HHsearch results for GI: 254780814 and protein with PDBid: 1zxm_A

>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00  E-value=0  Score=809.73  Aligned_cols=361  Identities=19%  Similarity=0.294  Sum_probs=318.1

Q ss_pred             EECCCCCHHCCCCCCEECCCCC---------------------CCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC-
Q ss_conf             2313542000458715432799---------------------6325445656755578868607-7975799983898-
Q gi|254780814|r   16 QILKGLDAVKKRPSMYIGDTDG---------------------ESGLHHMIYEVLDNAIDESLEG-YADIITVTLNMDG-   72 (803)
Q Consensus        16 ~~L~gle~vrkRP~mYiG~t~~---------------------~~Gl~hlv~EiidNsvDe~~~g-~~~~I~V~i~~dg-   72 (803)
                      |+|++|||||+|||||||||+.                     ..||||||||||||||||++|| +|+.|+|+|+.|+ 
T Consensus         7 ~~l~~lEhVr~RPgMYIGst~~~~~~~~~~~~~~~~~~~~~~~~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~~   86 (400)
T 1zxm_A            7 QKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN   86 (400)
T ss_dssp             EECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT
T ss_pred             CCCCHHHHHHCCCCCEECCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             75775779863999702777767653045427664012012268700589989999655488655798479999977999


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEEC--CEEEEEEE
Q ss_conf             3999976844536407778850012564250113232898604831167520377863264499999978--95999998
Q gi|254780814|r   73 SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSF  150 (803)
Q Consensus        73 sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rd--gk~~~q~f  150 (803)
                      +|||+||||||||++||++++|+||+|||+||||||||+++|++||||||||+|||||||+||+|+++++  ++.|.|.|
T Consensus        87 sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~yk~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q~~  166 (400)
T 1zxm_A           87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTW  166 (400)
T ss_dssp             EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEEEC
T ss_conf             89999899653200215667321024677841315668986236346445252555110341145566302305677510


Q ss_pred             ECCEECCCCEEECCCCCCCCEEEEEEECHHHHHHHHCCHHH---HHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCC
Q ss_conf             89836463138732778887089998778885421000899---999999731146416999996358642101001268
Q gi|254780814|r  151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG  227 (803)
Q Consensus       151 ~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~---l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~  227 (803)
                      .+|+...++..++.+.+++||+|+|+||++||+...|++++   +.+|++++|+|++|++|.++|++.         +..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~~~~l~~r~~~la~l~~~~~v~~~~~~~---------~~~  237 (400)
T 1zxm_A          167 MDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL---------PVK  237 (400)
T ss_dssp             ETTTTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEEC---------CCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCC
T ss_conf             23566455444557789995799998574401445515899999887789862777741898157656---------566


Q ss_pred             CCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHC
Q ss_conf             83577653003565568852036420036999733453177541212222462166677210356888999999999862
Q gi|254780814|r  228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS  307 (803)
Q Consensus       228 Gi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~  307 (803)
                      |+.+|++....+..+....++.+..+..+..||+|++|++++.+++ ||||+|+|++|||||+||++||++++++|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~~i-SfvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~  316 (400)
T 1zxm_A          238 GFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKK  316 (400)
T ss_dssp             SHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCEEE-EEETTEECTTEEHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-EEECCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7205224204332112476247876506852999998647665211-000340068997764368888998777788762


Q ss_pred             CCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42000123576134305721566652137633572100202611110321110268999987400357999877899988
Q gi|254780814|r  308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM  387 (803)
Q Consensus       308 ~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~  387 (803)
                      +   +.+.+++++||||||++||||+|+||||+||||+||+|++++..+...+.++|..++..     ..|+++++..++
T Consensus       317 ~---k~~~~i~~~Diregl~~visv~i~~PqFegQTK~kL~s~~~~~~~~~~l~~~fi~~~~~-----~~i~e~l~~~~~  388 (400)
T 1zxm_A          317 N---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIG-----CGIVESILNWVK  388 (400)
T ss_dssp             C-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTT-----C-----------
T ss_pred             C---CCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             5---46687899999749799999983899457821077148631251431368999999888-----799999999999


Q ss_pred             HHHHHHH
Q ss_conf             7755455
Q gi|254780814|r  388 VRDAARR  394 (803)
Q Consensus       388 ar~~a~k  394 (803)
                      +|++++.
T Consensus       389 ~k~~~~l  395 (400)
T 1zxm_A          389 FKAQVQL  395 (400)
T ss_dssp             -------
T ss_pred             HHHHHHH
T ss_conf             7588986