HHsearch results for GI: 254780814 and protein with PDBid: 3cwv_A
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=100.00 E-value=0 Score=802.56 Aligned_cols=348 Identities=23% Similarity=0.395 Sum_probs=323.4
Q ss_pred ECCC--CCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 3135--42000458715432799632544565675557886860779757999838983999976844536407778850
Q gi|254780814|r 17 ILKG--LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94 (803)
Q Consensus 17 ~L~g--le~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~ 94 (803)
.|.| |||||||||||||||+ ++|||||||||||||||||+||||+.|+|+|++||+|||+||||||||++|
T Consensus 6 ~~~~~~lE~VrkRPgMYiGst~-~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg~IsV~dnGrGIPv~~~------ 78 (369)
T 3cwv_A 6 HLPGGIVENVRKRPGMYCGDVG-EYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENL------ 78 (369)
T ss_dssp ---CCHHHHHHHSTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCHHHH------
T ss_pred CCCCCCCCCHHCCCCCEECCCC-CCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCEEEEE------
T ss_conf 3788730100059987427899-986558998886532207644888779999999996999928999522077------
Q ss_pred EEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECC-----CCCCC
Q ss_conf 0125642501132328986048311675203778632644999999789599999889836463138732-----77888
Q gi|254780814|r 95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-----AGNDT 169 (803)
Q Consensus 95 ~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~-----~~~~~ 169 (803)
++|||||||+++.|+++||+||+| |||||||++|+|+|+|+|+.|.|+|++|++..+.+.+.. +..++
T Consensus 79 ------~~l~~g~~f~~~~~~~~gG~~Gg~-svvNalS~~~~Vev~r~~~~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~ 151 (369)
T 3cwv_A 79 ------VRVATGAGFLGRPPGDGWGWDSML-VVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER 151 (369)
T ss_dssp ------HHHHTTTTGGGSSCCCSTTTTSSH-HHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSE
T ss_pred ------EEEEECCCCCCCCCCCCCCCCCEE-EEEEEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCCCC
T ss_conf ------887410233687776653466539-9999982089999997997999988857254788351440352676689
Q ss_pred CEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEE
Q ss_conf 70899987788854210008999999997311464169999963586421010012688357765300356556885203
Q gi|254780814|r 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 (803)
Q Consensus 170 GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~i~ 249 (803)
||+|+|+||+++|++..|+++.+..|++++||||+||++.|.|++.+ +...|+|++|+++|++|++.+..++++++++
T Consensus 152 gT~i~F~pD~~iF~~~~~~~~~i~~~lr~~a~l~~gl~i~l~~~~~~--~~~~~~~~~g~~~fv~~l~~~~~~l~~~~~~ 229 (369)
T 3cwv_A 152 GVRVHFVPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRG--ERTLWHLPGGVAQWAHVLTEARPQLHPEPVV 229 (369)
T ss_dssp EEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--EEEEEECTTHHHHHHHHHHTTSCBSSSSCEE
T ss_pred CCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCEEEEECCC--CEEEEEECCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf 97899966635544226527888644200443069960002584079--4468973574788999875146623547789
Q ss_pred EEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEE
Q ss_conf 64200369997334531775412122224621666772103568889999999998624200012357613430572156
Q gi|254780814|r 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 (803)
Q Consensus 250 ~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~v 329 (803)
++++.+++.||||++|++++.++++||||+|+|++|||||+||++||+++|++|++ +.+.+++++||||||+||
T Consensus 230 ~~~~~~~~~vEval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~k------k~k~~i~~~dIregL~~v 303 (369)
T 3cwv_A 230 FDFTWDGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWARVAQGLTAI 303 (369)
T ss_dssp EEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEE
T ss_pred EEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHHCCCEEE
T ss_conf 99776655389999974888623786347874899988688699999999998743------111358788875287899
Q ss_pred EEEECC--CCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 665213--763357210020261111032111026899998740035799987789998
Q gi|254780814|r 330 LSIKMP--DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 (803)
Q Consensus 330 isvki~--nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~ 386 (803)
|||+++ ||+|+||||+||+||+|+++|++++.+.|..||++||..|+.|++|++.|.
T Consensus 304 isV~~~~~nP~FegQTKekL~~~~v~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 304 VAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp EEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 99987898998078474761698799999999999999999979899999999998666