HHsearch results for GI: 254780814 and protein with PDBid: 3h4l_A
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.8e-12 Score=110.97 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCC
Q ss_conf 63254456567555788686077975799983898--399997684453640777885001256425011323---2898
Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK---FNQK 112 (803)
Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~k---fd~~ 112 (803)
...+...|.|+|+||+| || |+.|.|.|...| +|.|.|||.|||.+-- ++++.. |+-+| |+|-
T Consensus 23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~d~--------~~~~~r-~~TSK~~~~~dl 89 (367)
T 3h4l_A 23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPSNY--------EFLALK-HYTSKIAKFQDV 89 (367)
T ss_dssp CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGGGT--------TTTTCC-EEC---------
T ss_pred ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHHHH-CCCCCCCCCCCC
T ss_conf 46889999999977764---89-598999998798469999989998897899--------876542-058755532233
Q ss_pred CCEEECCCCCCEEEEEEECCCEEEEEEE-ECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEE----ECHHH---H-H
Q ss_conf 6048311675203778632644999999-789599999889836463138732778887089998----77888---5-4
Q gi|254780814|r 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL----PSSDI---F-S 183 (803)
Q Consensus 113 ~yk~sgGlhGvG~s~vNalS~~~~v~v~-rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~----PD~~i---F-~ 183 (803)
..--|.|..|.+.+...+.|+ +++..+ ++...+...|..+......+ .+....||+|+.. .-|.+ | .
T Consensus 90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GTtV~V~dLF~n~PvRrk~~~k 165 (367)
T 3h4l_A 90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSKT---TTSRNKGTTVLVSQLFHNLPVRQKEFSK 165 (367)
T ss_dssp CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEEE---EECCSSEEEEEEESTTTTCHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCCC---CCCCCCCCCEEEECCCCCCHHHHHHHHC
T ss_conf 112466644078998875256-479985058763349998337522235---4345666634632030587677887650
Q ss_pred HHHCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 2100089999999973114641699999635
Q gi|254780814|r 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 (803)
Q Consensus 184 ~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der 214 (803)
...-.+..+.+.++.+|..+|++++.+.+..
T Consensus 166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~~~ 196 (367)
T 3h4l_A 166 TFKRQFTKCLTVIQGYAIINAAIKFSVWNIT 196 (367)
T ss_dssp THHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 1026777778898644324797069998633