HHsearch results for GI: 254780814 and protein with PDBid: 3k9f_C
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C*
Probab=100.00 E-value=0 Score=685.40 Aligned_cols=238 Identities=53% Similarity=0.878 Sum_probs=219.4
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHH
Q ss_conf 11001100124676676666555555521799982557543223346544302330056203344305876632366788
Q gi|254780814|r 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 (803)
Q Consensus 397 ~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~ 476 (803)
++.++|++++.++|||||+||+++++++|||||||||||+|||+|||||+|||||||||||||||+++.++|++|+||++
T Consensus 20 ~~~~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~ 99 (268)
T 3k9f_C 20 DDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 99 (268)
T ss_dssp ----------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHH
T ss_conf 56533101335899852314478996654799977768751300326878789975388637354465989875888889
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC----CEEE
Q ss_conf 887625787753321235673738998508888532899999999963077874895999438337887267----1799
Q gi|254780814|r 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK----SLQY 552 (803)
Q Consensus 477 l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K----~E~Y 552 (803)
|++||||++|++ ||+++||||||||||||||||+||+||||||||+|||+||++|+||+++||||+|++|+ ...|
T Consensus 100 L~~~LGl~~g~~-~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y 178 (268)
T 3k9f_C 100 MIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAY 178 (268)
T ss_dssp HHHHHCSCC--C-CCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEE
T ss_pred HHHHHCCCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEE
T ss_conf 998744467887-8743376454899827998858899999999999749970289668953870899936887632677
Q ss_pred EECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 81457898999850011000014577654354689999999999999998643445799999887421135112357789
Q gi|254780814|r 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 (803)
Q Consensus 553 ikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~ 632 (803)
..++.+++.+.
T Consensus 179 ~~~~~~~~~~~--------------------------------------------------------------------- 189 (268)
T 3k9f_C 179 AWTDGELEELR--------------------------------------------------------------------- 189 (268)
T ss_dssp ECSHHHHHHHH---------------------------------------------------------------------
T ss_pred EECCCHHHHHH---------------------------------------------------------------------
T ss_conf 65021458999---------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999998876531000011002445670599999518530266466774164278999988887751145502765582
Q gi|254780814|r 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 (803)
Q Consensus 633 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 712 (803)
T Consensus 190 -------------------------------------------------------------------------------- 189 (268)
T 3k9f_C 190 -------------------------------------------------------------------------------- 189 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 58739989999999986306762860377778895572230389613402123679889888786564189987628998
Q gi|254780814|r 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 (803)
Q Consensus 713 ~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFI 792 (803)
....++.+||||||||||||+|+|||||||++|+|+||+++|+.+|+++|.+|||++|++||+||
T Consensus 190 ---------------~~~~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d~~~~~~~~~~l~gk~~d~RK~wi 254 (268)
T 3k9f_C 190 ---------------KQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWI 254 (268)
T ss_dssp ---------------HHSCTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHH
T ss_pred ---------------HHHCCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf ---------------97188862575787787999999998359524689997447478799999987599968999999
Q ss_pred HHHHHHC
Q ss_conf 8524412
Q gi|254780814|r 793 QENSLPS 799 (803)
Q Consensus 793 e~NAL~v 799 (803)
++||.-+
T Consensus 255 ~~n~~~~ 261 (268)
T 3k9f_C 255 EDNVKFT 261 (268)
T ss_dssp HHHCCCC
T ss_pred HHHCCHH
T ss_conf 9834302