Query         gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 803
No_of_seqs    234 out of 2361
Neff          6.6 
Searched_HMMs 23785
Date          Mon May 30 13:03:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780814.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3nuh_B DNA gyrase subunit B; t 100.0       0       0 1088.7  33.7  411  392-803     1-420 (420)
  2 1ei1_A DNA gyrase B, GYRB; ATP 100.0       0       0  956.1  28.2  390    7-399     1-391 (391)
  3 1kij_A DNA gyrase subunit B; t 100.0       0       0  922.9  27.5  388    9-399     2-390 (390)
  4 1s16_A Topoisomerase IV subuni 100.0       0       0  905.8  28.0  385    9-402     4-390 (390)
  5 1zxm_A TOPO IIA ATPase, DNA to 100.0       0       0  809.7  18.5  361   16-394     7-395 (400)
  6 3cwv_A DNA gyrase, B subunit,  100.0       0       0  802.6  22.2  348   17-386     6-362 (369)
  7 1pvg_A DNA topoisomerase II; G 100.0       0       0  809.3  15.5  372    6-390     8-413 (418)
  8 3k9f_C DNA topoisomerase 4 sub 100.0       0       0  685.4  16.2  238  397-799    20-261 (268)
  9 2xkj_E Topoisomerase IV; type  100.0       0       0  680.8  15.8  256  380-802     2-258 (767)
 10 3m4i_A DNA gyrase subunit B; G 100.0       0       0  664.1  16.2  234  413-803     8-242 (242)
 11 2q2e_B Type 2 DNA topoisomeras 100.0       0       0  713.7 -41.3  579    7-789     5-611 (621)
 12 3l4j_A DNA topoisomerase 2; to 100.0       0       0  574.3  14.8  226  407-798     3-240 (757)
 13 2xcs_B DNA gyrase subunit B, D 100.0       0       0  563.2  10.4  198  405-799     1-198 (692)
 14 3fv5_A DNA topoisomerase 4 sub 100.0       0       0  542.3  13.0  200   20-225     1-201 (201)
 15 3g7e_A DNA gyrase subunit B; i 100.0       0       0  521.3  13.5  202   20-224     1-203 (203)
 16 3g75_A DNA gyrase subunit B; a 100.0       0       0  479.1  11.9  182   20-226     1-184 (184)
 17 1mu5_A Type II DNA topoisomera  99.5 5.9E-13 2.5E-17  118.0  16.4  182   16-213     9-209 (471)
 18 3h4l_A DNA mismatch repair pro  99.5 4.8E-12   2E-16  111.0  19.6  160   38-214    23-196 (367)
 19 1h7s_A PMS1 protein homolog 2;  99.4 1.1E-11 4.7E-16  108.1  12.2  192    1-215     1-207 (365)
 20 3na3_A DNA mismatch repair pro  99.4 1.7E-10   7E-15   99.0  17.8  259   39-340    27-305 (348)
 21 1b63_A MUTL; DNA mismatch repa  98.9 2.6E-08 1.1E-12   82.0  13.2  260   38-340    22-302 (333)
 22 2zbk_B Type 2 DNA topoisomeras  98.8 6.9E-09 2.9E-13   86.5   6.5  116   15-143     7-135 (530)
 23 2gqp_A Endoplasmin; GRP94, HSP  97.4 0.00097 4.1E-08   46.5   8.7  143   45-200    37-208 (236)
 24 1uyl_A HSP 86, heat shock prot  97.3  0.0007 2.9E-08   47.6   7.2  143   46-200    46-211 (236)
 25 2cg9_A ATP-dependent molecular  97.3  0.0015 6.4E-08   44.9   8.7  151   46-208    32-207 (677)
 26 1y4s_A Chaperone protein HTPG;  97.2  0.0022 9.2E-08   43.7   8.8  152   45-210    32-212 (559)
 27 1yc1_A HSP 86, heat shock prot  97.2  0.0011 4.4E-08   46.2   6.9  143   46-200    74-239 (264)
 28 2wer_A ATP-dependent molecular  97.1  0.0014 5.7E-08   45.3   6.8  145   45-200    31-198 (220)
 29 1qy5_A Endoplasmin; GRP94, NEC  97.1   0.001 4.4E-08   46.2   6.0  157   45-215    33-218 (269)
 30 2o1u_A Endoplasmin; GRP94, HSP  97.1 0.00063 2.7E-08   47.9   4.8  155   46-214    51-234 (666)
 31 3peh_A Endoplasmin homolog; st  97.0  0.0013 5.6E-08   45.4   6.2  154   46-215    52-233 (281)
 32 2q8g_A [pyruvate dehydrogenase  96.8 0.00087 3.7E-08   46.8   3.5   60  510-590   241-302 (407)
 33 1gkz_A [3-methyl-2-oxobutanoat  96.7  0.0026 1.1E-07   43.2   5.7   64  509-591   235-299 (388)
 34 2ior_A Chaperone protein HTPG;  96.7 0.00028 1.2E-08   50.7   0.7  122   46-178    53-201 (235)
 35 2btz_A Pyruvate dehydrogenase   96.7  0.0023 9.5E-08   43.6   5.3   64  509-592   228-292 (394)
 36 3ied_A Heat shock protein; HSP  96.6  0.0093 3.9E-07   38.8   8.1  109   63-180   120-242 (272)
 37 1y8o_A [pyruvate dehydrogenase  96.6 0.00092 3.9E-08   46.6   2.6   64  509-592   250-315 (419)
 38 2e0a_A Pyruvate dehydrogenase   96.4  0.0037 1.6E-07   41.9   4.8   63  509-592   227-291 (394)
 39 1bxd_A ENVZ(290-450), protein   96.2  0.0064 2.7E-07   40.1   5.3   95   38-150    45-147 (161)
 40 2ioq_A Chaperone protein HTPG;  96.1   0.003 1.3E-07   42.7   3.2  151   46-208    33-210 (624)
 41 1th8_A Anti-sigma F factor; SP  96.0  0.0046 1.9E-07   41.3   3.6   92   40-149    39-135 (145)
 42 3ehg_A Sensor kinase (YOCF pro  95.7   0.018 7.4E-07   36.7   5.6   48   39-89     39-89  (128)
 43 3a0y_A Sensor protein; ATP-LID  95.3   0.024   1E-06   35.6   5.2   74   38-131    45-121 (152)
 44 1ysr_A Sensor-type histidine k  95.3   0.019 8.1E-07   36.4   4.5   86   28-134    37-125 (150)
 45 3d36_A Sporulation kinase B; G  94.9   0.021 8.7E-07   36.2   3.9   76   38-132   121-199 (244)
 46 3jz3_A Sensor protein QSEC; he  94.6   0.027 1.1E-06   35.2   3.9   79   39-135   116-194 (222)
 47 1id0_A PHOQ histidine kinase;   94.6   0.045 1.9E-06   33.5   5.0   78   38-135    42-122 (152)
 48 3a0r_A Sensor protein; four he  94.4    0.05 2.1E-06   33.2   4.8   11  511-521   243-253 (349)
 49 2c2a_A Sensor histidine kinase  94.4   0.042 1.8E-06   33.8   4.3   85   38-134   136-224 (258)
 50 1ixm_A SPO0B, protein (sporula  93.7   0.033 1.4E-06   34.6   2.8   46   40-86    112-160 (192)
 51 3ehh_A Sensor kinase (YOCF pro  91.4    0.16 6.7E-06   29.3   3.7   45   40-87    130-177 (218)
 52 1r62_A Nitrogen regulation pro  89.6    0.35 1.5E-05   26.6   4.2   77   38-132    46-134 (160)
 53 1b3q_A Protein (chemotaxis pro  77.1       1 4.2E-05   23.1   2.0   47   40-86    106-165 (379)
 54 2au3_A DNA primase; zinc ribbo  73.0     3.9 0.00017   18.5   6.3   52  496-568   286-338 (407)
 55 3hqc_A Tensin-like C1 domain-c  65.2     5.5 0.00023   17.3   4.1   49   30-84     19-73  (157)
 56 1wvh_A Tensin, tensin1; beta s  57.3     7.4 0.00031   16.3   4.5   50   30-85      7-62  (134)
 57 2fcj_A Small toprim domain pro  48.4     5.5 0.00023   17.3   1.3   57  498-569    51-107 (119)
 58 2zxr_A Single-stranded DNA spe  45.0     8.7 0.00037   15.8   1.9   28  363-390   284-311 (666)
 59 1t6t_1 Putative protein; struc  38.9     2.2 9.2E-05   20.4  -1.9   49  496-571    61-109 (118)
 60 3ggq_A Capsid protein; beta ba  36.8      10 0.00042   15.3   1.2   20  107-126    25-44  (149)
 61 1l4i_A SFAE protein; periplasm  33.4      16 0.00069   13.7   1.8   20   66-85      9-31  (206)
 62 1ux6_A Thrombospondin-1; extra  32.6     7.7 0.00032   16.2   0.0   10   75-84    158-167 (350)
 63 3dxe_A Amyloid beta A4 protein  32.3      17 0.00072   13.5   3.5   61   23-89      6-72  (140)
 64 1mw9_X DNA topoisomerase I; de  31.7      13 0.00055   14.4   1.1   14  291-304   161-174 (592)
 65 2xg5_A PAPD, chaperone protein  31.7      16 0.00069   13.7   1.6   14   72-85     18-31  (218)
 66 2co7_B SAFB chaperone, putativ  31.1      17 0.00072   13.5   1.6   10   72-81     30-39  (221)
 67 3dcl_A TM1086; SAD, structural  30.0      19 0.00078   13.2   2.3   21  489-509   207-227 (284)
 68 1klf_A FIMC chaperone, chapero  29.9      17 0.00073   13.5   1.5   13   72-84     18-30  (205)
 69 3gfu_C Chaperone protein FAEE;  28.0      20 0.00084   13.0   1.6   20   66-85      9-31  (224)
 70 1g73_A SMAC/diablo, second mit  27.2      17 0.00071   13.5   1.0   14  293-306    38-51  (162)
 71 1o58_A O-acetylserine sulfhydr  26.1     9.1 0.00038   15.6  -0.5   14  115-128    70-83  (303)
 72 1sp8_A 4-hydroxyphenylpyruvate  25.9      21 0.00089   12.8   1.3   15  739-753   392-406 (418)
 73 1few_A Second mitochondria-der  25.3      20 0.00084   13.0   1.1   14  293-306    38-51  (184)
 74 1x1q_A Tryptophan synthase bet  25.0      17 0.00072   13.5   0.7   13  357-369   189-201 (418)
 75 2d99_A Muscle, general transcr  24.7      16 0.00069   13.7   0.6   66   33-100     1-70  (90)
 76 1l6n_A GAG polyprotein; matrix  23.8      11 0.00046   15.0  -0.5   32  452-484   146-178 (289)
 77 2gai_A DNA topoisomerase I; zi  23.5      20 0.00083   13.0   0.8   12  730-741   618-629 (633)
 78 2dzq_A General transcription f  23.0      19 0.00079   13.2   0.6   66   33-100     1-70  (99)
 79 3gty_S TF, 30S ribosomal prote  22.8      24   0.001   12.3   3.3   14  335-348     7-20  (149)
 80 2dn5_A General transcription f  22.8      18 0.00078   13.3   0.5   66   33-100     1-70  (89)
 81 3hag_A Capsid protein; jelly-r  22.7      23 0.00095   12.6   1.0   14  448-462   426-439 (504)
 82 2ed2_A General transcription f  22.7      19 0.00078   13.2   0.5   66   33-100     1-70  (99)
 83 2ea9_A JW2626, hypothetical pr  22.6      25   0.001   12.3   1.5   10  503-512    84-93  (105)
 84 2dn4_A General transcription f  22.4      18 0.00076   13.3   0.4   66   33-100     1-70  (99)
 85 2pp6_A Gifsy-2 prophage ATP-bi  21.6      26  0.0011   12.1   4.0   43  118-161    46-95  (102)
 86 2bez_F E2 glycoprotein; coiled  21.5      15 0.00064   13.9  -0.1   13  118-130     8-20  (42)
 87 1u1i_A INO1, MIPS, MYO-inosito  20.8      24   0.001   12.4   0.8   34  274-323   194-227 (392)
 88 1yo8_A Thrombospondin-2; EGF,   20.7      18 0.00077   13.3   0.2   37  727-763   509-548 (634)
 89 2dzr_A General transcription f  20.6      21 0.00087   12.9   0.4   66   33-100     1-70  (99)
 90 1q60_A General transcription f  20.3      24   0.001   12.4   0.7   66   33-100     1-70  (99)

No 1  
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00  E-value=0  Score=1088.68  Aligned_cols=411  Identities=46%  Similarity=0.739  Sum_probs=389.7

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCC
Q ss_conf             45532110011001246766766665555555217999825575432233465443023300562033443058766323
Q gi|254780814|r  392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS  471 (803)
Q Consensus       392 a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n  471 (803)
                      |+||||+||||++|++++|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+|+.++|++|
T Consensus         1 ~~~ar~l~rrk~~l~~~~lpgkl~d~~~~~~~~~~l~~~egdsa~~~~~~~r~~~~~~~~pl~gk~ln~~~~~~~~~~~n   80 (420)
T 3nuh_B            1 SNAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS   80 (420)
T ss_dssp             -----------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCC
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHCC
T ss_conf             93578878410234568998620201148976557999757566777764348666688653886432402788788568


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEE
Q ss_conf             66788887625787753321235673738998508888532899999999963077874895999438337887267179
Q gi|254780814|r  472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ  551 (803)
Q Consensus       472 ~Ei~~l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~  551 (803)
                      +||.+|++|||||+|.++||+++||||||||||||||||+||||||||||||+||+||++|||||||||||+|++||+++
T Consensus        81 ~ei~~l~~~lg~~~~~~~~~~~~lry~~i~i~tdad~dg~hi~~ll~~~~~~~~~~l~~~g~~~~~~~p~~~~~~~k~~~  160 (420)
T 3nuh_B           81 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ  160 (420)
T ss_dssp             HHHHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEECCHHHEECCCCEE
T ss_conf             99999999976688977677000554527997357877520588999999986767650780699847246323487107


Q ss_pred             EEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHH
Q ss_conf             98145789899985001100001457765435468999999999999999864344579999988742113511--2357
Q gi|254780814|r  552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQE  629 (803)
Q Consensus       552 YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~--~d~~  629 (803)
                      |++||.||++||++.|+++..+....++..++|++|.+++..+.++++++.+++++++..++++++..+.+...  .++.
T Consensus       161 y~~~~~~~~~~li~~g~e~~~L~~~~~g~~isg~eL~~ll~~~~~~~~ll~~l~rr~~~~~l~~l~~~~~l~~~~l~~~~  240 (420)
T 3nuh_B          161 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ  240 (420)
T ss_dssp             EECCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHH
T ss_pred             EEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHH
T ss_conf             88503678899997413574663155553246477888899999999999987542667789999853333244321179


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEECC------CCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             789999999988765310000110024------45670599999518530266466774164278999988887751145
Q gi|254780814|r  630 INVSLASKLANRLNFIAEKSEKSWHGS------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT  703 (803)
Q Consensus       630 ~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~  703 (803)
                      ....|.+.+...++...... ..|...      .....+.+.+..+|+.....++..|+.+.+++.+..+...+...+..
T Consensus       241 ~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~d~e~~~~~~~i~~~~~Gv~~~~~I~~~f~~s~e~~~l~~~~~~~~~~~~~  319 (420)
T 3nuh_B          241 TVTRWVNALVSELNDKEQHG-SQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE  319 (420)
T ss_dssp             HHHHHHHHHHHHHHHHCCSS-CEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCEEEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999986553037-60589985346555221589998447322563398884476789999999987554124


Q ss_pred             CEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCC
Q ss_conf             50276558258739989999999986306762860377778895572230389613402123679889888786564189
Q gi|254780814|r  704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD  783 (803)
Q Consensus       704 ~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD  783 (803)
                      ++.+..+++.+++.+|.+++++|++.||||++||||||||||||||||||||||++|+||||+|+||++||+||++||||
T Consensus       320 ~~~~~~~~~~~~i~s~~ell~~v~~~gkKGlsIQRYKGLGEMNPeQLWETTMDP~~RtLLqV~IeDa~~AD~iFs~LMGD  399 (420)
T 3nuh_B          320 DAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGD  399 (420)
T ss_dssp             SEEEEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCC
T ss_conf             53012576452137689999999996078981234564777798898641528102617998513488999899872699


Q ss_pred             CCCCHHHHHHHHHHHC-CCCC
Q ss_conf             9876289988524412-3669
Q gi|254780814|r  784 EVEPRREFIQENSLPS-ALDI  803 (803)
Q Consensus       784 ~VEPRReFIe~NAL~v-NLDI  803 (803)
                      +|||||+|||+|||+| ||||
T Consensus       400 ~VEPRR~FIe~NAl~V~NLDI  420 (420)
T 3nuh_B          400 AVEPRRAFIEENALKAANIDI  420 (420)
T ss_dssp             C--------------------
T ss_pred             CCHHHHHHHHHHHHHHHHCCC
T ss_conf             957889999998403232599


No 2  
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=956.13  Aligned_cols=390  Identities=57%  Similarity=0.931  Sum_probs=377.4

Q ss_pred             CCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf             23678655123135420004587154327996325445656755578868607797579998389839999768445364
Q gi|254780814|r    7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD   86 (803)
Q Consensus         7 ~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~   86 (803)
                      +++|||++|++|+||||||||||||||||+..+|||||+|||||||+||+++|||+.|+|+|+.||+|||+||||||||+
T Consensus         1 ~~~~d~~~i~~L~~lE~Vr~RP~mYiGs~~~~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dgsisV~ddGrGIPv~   80 (391)
T 1ei1_A            1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG   80 (391)
T ss_dssp             CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS
T ss_pred             CCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf             99789777846035227762998876468988722068888888432352149986799999279829999799867677


Q ss_pred             CCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC
Q ss_conf             07778850012564250113232898604831167520377863264499999978959999988983646313873277
Q gi|254780814|r   87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG  166 (803)
Q Consensus        87 ~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~  166 (803)
                      +||++++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|+.|.|+|++|++..|++.++++ 
T Consensus        81 ~h~~~~~~~~Elif~~L~tg~nfd~~~~~~sgG~nGvGakl~NalS~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~-  159 (391)
T 1ei1_A           81 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-  159 (391)
T ss_dssp             BCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-
T ss_pred             CCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEEECCEECCCCEEECCC-
T ss_conf             7666685100899999713677799874331688765427999961555999996998999998099397884050575-


Q ss_pred             CCCCEEEEEEECHHHH-HHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             8887089998778885-421000899999999731146416999996358642101001268835776530035655688
Q gi|254780814|r  167 NDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ  245 (803)
Q Consensus       167 ~~~GT~I~F~PD~~iF-~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~  245 (803)
                      +++||+|+|+||+++| +...|++++|.+|++++|||+|||+|+|+|++.+  ++..|+|++||++|+++++.+..++++
T Consensus       160 ~~~gT~I~F~PD~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~i~~~d~~~~--~~~~~~~~~gl~~~~~~l~~~~~~~~~  237 (391)
T 1ei1_A          160 EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP  237 (391)
T ss_dssp             SCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC--CEEEECCCSHHHHHHHHHHHTSCBSSS
T ss_pred             CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC--CEEEEECCCCHHHHHHHHCCCCCCCCC
T ss_conf             789758999979788178655669999999999855089977999960478--268887076499999986258876799


Q ss_pred             CCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
Q ss_conf             52036420036999733453177541212222462166677210356888999999999862420001235761343057
Q gi|254780814|r  246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG  325 (803)
Q Consensus       246 ~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Direg  325 (803)
                      +++++..+.+++.||||++|+++|+++++||||+|+|++|||||+||+.+|+++|++|+++.++.|+.+.+++++|||++
T Consensus       238 ~~~~~~~~~~~~~veva~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~l~~~i~~~~~k~~~~k~~~~~~~~~~Ik~~  317 (391)
T 1ei1_A          238 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG  317 (391)
T ss_dssp             CCEEEEEEETTEEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTT
T ss_pred             CCEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
T ss_conf             76899976578289999984488836899986322489997979999999999999998775440123456888899709


Q ss_pred             CEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             21566652137633572100202611110321110268999987400357999877899988775545532110
Q gi|254780814|r  326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT  399 (803)
Q Consensus       326 l~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~  399 (803)
                      |++||||+|+||+|+||||++|+|++++..|+..+.+.|..||++||..|+.|+++++++|+||++||||||+|
T Consensus       318 l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~i~~a~ar~~a~karelt  391 (391)
T 1ei1_A          318 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT  391 (391)
T ss_dssp             EEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             49999998589967782017636974787889999999999999797999999999999999999998877049


No 3  
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=922.93  Aligned_cols=388  Identities=44%  Similarity=0.747  Sum_probs=373.5

Q ss_pred             CCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf             67865512313542000458715432799632544565675557886860779757999838983999976844536407
Q gi|254780814|r    9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH   88 (803)
Q Consensus         9 ~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h   88 (803)
                      +|+|++|++|+||||||+|||||||||+ ..|||||+|||||||+||+++|||+.|+|+|++||+|||+||||||||++|
T Consensus         2 ~y~~~~i~~L~~le~Vr~RP~mYiGst~-~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg~isV~ddGrGIPv~~h   80 (390)
T 1kij_A            2 SYDASAIRVLKGLEGVRHRPAMYIGGTG-VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLM   80 (390)
T ss_dssp             -----CCEECCTTHHHHHCTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred             CCCHHHCEECCCCHHHHCCCCCEECCCC-CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEECCCC
T ss_conf             6276879451461176539962655899-872217887666856667436999669999969985999988872664786


Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-C
Q ss_conf             778850012564250113232898604831167520377863264499999978959999988983646313873277-8
Q gi|254780814|r   89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N  167 (803)
Q Consensus        89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~  167 (803)
                      |++++|+||||||+||||||||+++|++||||||||||||||||++|+|+|+|+|+.|+|+|++|++..+++.++.++ +
T Consensus        81 ~~~~~~~~e~i~~~L~tg~nfd~~~~k~sgG~nGvGa~l~NalS~~f~v~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  160 (390)
T 1kij_A           81 PEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRG  160 (390)
T ss_dssp             TTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGG
T ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEEEEEECCEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf             67797101999989845676578875302675764427652325203899980433799998488365772021667889


Q ss_pred             CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             88708999877888542100089999999973114641699999635864210100126883577653003565568852
Q gi|254780814|r  168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP  247 (803)
Q Consensus       168 ~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~  247 (803)
                      ++||+|+|+||+++|++..|+++.|..|++++|||+|||++.+.|++..  +...|++++|+.+|+.+++.+.+++++.+
T Consensus       161 ~~gT~I~F~PD~~iF~~~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  238 (390)
T 1kij_A          161 KTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG--KEEVFLDKGGVASFAKALAEGEDLLYEKP  238 (390)
T ss_dssp             CCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT--EEEEECCTTHHHHHHHHHTTTSCBSCSSC
T ss_pred             CCEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CEEEEECCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             9807999995868745663338999888898875338846751016788--02322227626777675304776134421


Q ss_pred             EEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCE
Q ss_conf             03642003699973345317754121222246216667721035688899999999986242000123576134305721
Q gi|254780814|r  248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT  327 (803)
Q Consensus       248 i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~  327 (803)
                      ++.....+.+.++++++|++++.+.++||||+|+|++|||||+||+.+|+++|++|+++.++.|+.+.+++++|||+||+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~i~k~i~~~~~k~~~~k~~~~~i~~~dIk~~l~  318 (390)
T 1kij_A          239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLY  318 (390)
T ss_dssp             EEEEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEE
T ss_pred             CEECCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCEE
T ss_conf             01023332035788630379876578988635887999746887999999999999987264344456788889972919


Q ss_pred             EEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             566652137633572100202611110321110268999987400357999877899988775545532110
Q gi|254780814|r  328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT  399 (803)
Q Consensus       328 ~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~  399 (803)
                      +||||+|+||+|+||||++|+|++++..++++++++|..||++||..|+.|+++++++|+||++||||||++
T Consensus       319 ~~Is~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~Ivek~l~~a~aR~~akk~re~v  390 (390)
T 1kij_A          319 AVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV  390 (390)
T ss_dssp             EEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999998789972682128516853788899999999999999797999999999999999999998523249


No 4  
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00  E-value=0  Score=905.83  Aligned_cols=385  Identities=36%  Similarity=0.619  Sum_probs=361.6

Q ss_pred             CCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC
Q ss_conf             67865512313542000458715432799632544565675557886860779757999838983999976844536407
Q gi|254780814|r    9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH   88 (803)
Q Consensus         9 ~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h   88 (803)
                      +|+|++|++|+||||||||||||||||    |||||+||||||||||+++|||+.|+|+|++||+|||+||||||||++|
T Consensus         4 ~y~~~~i~~L~~lE~Vr~RP~mYiGs~----gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~~h   79 (390)
T 1s16_A            4 TYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH   79 (390)
T ss_dssp             CCSGGGCEECCTTHHHHHCGGGTSCTT----STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred             CCCHHHCEEECCCHHHHCCCCCEECCC----CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEECCC
T ss_conf             638645846145237653896678999----8520786998746506742999679999918986999988995000456


Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-C
Q ss_conf             778850012564250113232898604831167520377863264499999978959999988983646313873277-8
Q gi|254780814|r   89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N  167 (803)
Q Consensus        89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~  167 (803)
                      |++++|+||||||+||||||||+++|++||||||||||||||||+||+|+|+|+|++|.|+|++|++..+++.++.+. +
T Consensus        80 ~~~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~~~~  159 (390)
T 1s16_A           80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKR  159 (390)
T ss_dssp             TTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECCCCC
T ss_conf             56687713888987603676788774230675762458989624107999986467689996399745672176145778


Q ss_pred             CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf             88708999877888542100089999999973114641699999635864210100126883577653003565568852
Q gi|254780814|r  168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP  247 (803)
Q Consensus       168 ~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~  247 (803)
                      ++||+|+|+||+++|++..|++++|..|++++|||+||+++.+.|++..  ....|+|++|+.+|+.+++.++.++++.+
T Consensus       160 ~~gT~ItF~PD~~~F~~~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~~--~~~~~~~~~Gi~~y~~~~~~~~~~~~~~~  237 (390)
T 1s16_A          160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEKP  237 (390)
T ss_dssp             CCEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--EEEEECCSSCHHHHHHHHHTTSCCEEEEE
T ss_pred             CCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEEEECCCC--EEEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf             9968999994868704423269999999987528868955788751687--06777604867677888725898655663


Q ss_pred             EEEEEEEEEEEEEEEEEECC-CCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCC
Q ss_conf             03642003699973345317-75412122224621666772103568889999999998624200012357613430572
Q gi|254780814|r  248 IRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF  326 (803)
Q Consensus       248 i~~~~~~~~~~veval~~~~-~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl  326 (803)
                      ++.....++..|||+++|++ ++.+.++||||+|+|++|||||+||+.||+++|++|+++.++.|+ +.+++++|||+||
T Consensus       238 ~~~~~~~~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk-~~~i~~~di~~~l  316 (390)
T 1s16_A          238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRC  316 (390)
T ss_dssp             EEEEEECSSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCT-TCCCCHHHHHTTE
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHCCE
T ss_conf             587760677259999986143443034444343766899475230799999999999997174445-6747854653776


Q ss_pred             EEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             1566652137633572100202611110321110268999987400357999877899988775545532110011
Q gi|254780814|r  327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK  402 (803)
Q Consensus       327 ~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~rrK  402 (803)
                      ++||||+|+||+|+||||++|+|++++..|+..++++|..||++||..|+.|+++++.+|++|.  +++|+++|||
T Consensus       317 ~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~--~~~k~~~RkK  390 (390)
T 1s16_A          317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRKK  390 (390)
T ss_dssp             EEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--HHC-------
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCC
T ss_conf             9999998479960771117306976888899999999999999797999999999999999999--9767875379


No 5  
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00  E-value=0  Score=809.73  Aligned_cols=361  Identities=19%  Similarity=0.294  Sum_probs=318.1

Q ss_pred             EECCCCCHHCCCCCCEECCCCC---------------------CCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC-
Q ss_conf             2313542000458715432799---------------------6325445656755578868607-7975799983898-
Q gi|254780814|r   16 QILKGLDAVKKRPSMYIGDTDG---------------------ESGLHHMIYEVLDNAIDESLEG-YADIITVTLNMDG-   72 (803)
Q Consensus        16 ~~L~gle~vrkRP~mYiG~t~~---------------------~~Gl~hlv~EiidNsvDe~~~g-~~~~I~V~i~~dg-   72 (803)
                      |+|++|||||+|||||||||+.                     ..||||||||||||||||++|| +|+.|+|+|+.|+ 
T Consensus         7 ~~l~~lEhVr~RPgMYIGst~~~~~~~~~~~~~~~~~~~~~~~~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~~   86 (400)
T 1zxm_A            7 QKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN   86 (400)
T ss_dssp             EECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT
T ss_pred             CCCCHHHHHHCCCCCEECCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             75775779863999702777767653045427664012012268700589989999655488655798479999977999


Q ss_pred             EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEEC--CEEEEEEE
Q ss_conf             3999976844536407778850012564250113232898604831167520377863264499999978--95999998
Q gi|254780814|r   73 SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSF  150 (803)
Q Consensus        73 sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rd--gk~~~q~f  150 (803)
                      +|||+||||||||++||++++|+||+|||+||||||||+++|++||||||||+|||||||+||+|+++++  ++.|.|.|
T Consensus        87 sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~yk~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q~~  166 (400)
T 1zxm_A           87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTW  166 (400)
T ss_dssp             EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEEEC
T ss_conf             89999899653200215667321024677841315668986236346445252555110341145566302305677510


Q ss_pred             ECCEECCCCEEECCCCCCCCEEEEEEECHHHHHHHHCCHHH---HHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCC
Q ss_conf             89836463138732778887089998778885421000899---999999731146416999996358642101001268
Q gi|254780814|r  151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG  227 (803)
Q Consensus       151 ~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~---l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~  227 (803)
                      .+|+...++..++.+.+++||+|+|+||++||+...|++++   +.+|++++|+|++|++|.++|++.         +..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~~~~l~~r~~~la~l~~~~~v~~~~~~~---------~~~  237 (400)
T 1zxm_A          167 MDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL---------PVK  237 (400)
T ss_dssp             ETTTTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEEC---------CCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCC
T ss_conf             23566455444557789995799998574401445515899999887789862777741898157656---------566


Q ss_pred             CCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHC
Q ss_conf             83577653003565568852036420036999733453177541212222462166677210356888999999999862
Q gi|254780814|r  228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS  307 (803)
Q Consensus       228 Gi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~  307 (803)
                      |+.+|++....+..+....++.+..+..+..||+|++|++++.+++ ||||+|+|++|||||+||++||++++++|+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~~i-SfvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~  316 (400)
T 1zxm_A          238 GFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKK  316 (400)
T ss_dssp             SHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCEEE-EEETTEECTTEEHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-EEECCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7205224204332112476247876506852999998647665211-000340068997764368888998777788762


Q ss_pred             CCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42000123576134305721566652137633572100202611110321110268999987400357999877899988
Q gi|254780814|r  308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM  387 (803)
Q Consensus       308 ~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~  387 (803)
                      +   +.+.+++++||||||++||||+|+||||+||||+||+|++++..+...+.++|..++..     ..|+++++..++
T Consensus       317 ~---k~~~~i~~~Diregl~~visv~i~~PqFegQTK~kL~s~~~~~~~~~~l~~~fi~~~~~-----~~i~e~l~~~~~  388 (400)
T 1zxm_A          317 N---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIG-----CGIVESILNWVK  388 (400)
T ss_dssp             C-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTT-----C-----------
T ss_pred             C---CCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf             5---46687899999749799999983899457821077148631251431368999999888-----799999999999


Q ss_pred             HHHHHHH
Q ss_conf             7755455
Q gi|254780814|r  388 VRDAARR  394 (803)
Q Consensus       388 ar~~a~k  394 (803)
                      +|++++.
T Consensus       389 ~k~~~~l  395 (400)
T 1zxm_A          389 FKAQVQL  395 (400)
T ss_dssp             -------
T ss_pred             HHHHHHH
T ss_conf             7588986


No 6  
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=100.00  E-value=0  Score=802.56  Aligned_cols=348  Identities=23%  Similarity=0.395  Sum_probs=323.4

Q ss_pred             ECCC--CCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             3135--42000458715432799632544565675557886860779757999838983999976844536407778850
Q gi|254780814|r   17 ILKG--LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS   94 (803)
Q Consensus        17 ~L~g--le~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~   94 (803)
                      .|.|  |||||||||||||||+ ++|||||||||||||||||+||||+.|+|+|++||+|||+||||||||++|      
T Consensus         6 ~~~~~~lE~VrkRPgMYiGst~-~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg~IsV~dnGrGIPv~~~------   78 (369)
T 3cwv_A            6 HLPGGIVENVRKRPGMYCGDVG-EYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENL------   78 (369)
T ss_dssp             ---CCHHHHHHHSTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCHHHH------
T ss_pred             CCCCCCCCCHHCCCCCEECCCC-CCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCEEEEE------
T ss_conf             3788730100059987427899-986558998886532207644888779999999996999928999522077------


Q ss_pred             EEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECC-----CCCCC
Q ss_conf             0125642501132328986048311675203778632644999999789599999889836463138732-----77888
Q gi|254780814|r   95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-----AGNDT  169 (803)
Q Consensus        95 ~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~-----~~~~~  169 (803)
                            ++|||||||+++.|+++||+||+| |||||||++|+|+|+|+|+.|.|+|++|++..+.+.+..     +..++
T Consensus        79 ------~~l~~g~~f~~~~~~~~gG~~Gg~-svvNalS~~~~Vev~r~~~~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~  151 (369)
T 3cwv_A           79 ------VRVATGAGFLGRPPGDGWGWDSML-VVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER  151 (369)
T ss_dssp             ------HHHHTTTTGGGSSCCCSTTTTSSH-HHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSE
T ss_pred             ------EEEEECCCCCCCCCCCCCCCCCEE-EEEEEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCCCC
T ss_conf             ------887410233687776653466539-9999982089999997997999988857254788351440352676689


Q ss_pred             CEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEE
Q ss_conf             70899987788854210008999999997311464169999963586421010012688357765300356556885203
Q gi|254780814|r  170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR  249 (803)
Q Consensus       170 GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~i~  249 (803)
                      ||+|+|+||+++|++..|+++.+..|++++||||+||++.|.|++.+  +...|+|++|+++|++|++.+..++++++++
T Consensus       152 gT~i~F~pD~~iF~~~~~~~~~i~~~lr~~a~l~~gl~i~l~~~~~~--~~~~~~~~~g~~~fv~~l~~~~~~l~~~~~~  229 (369)
T 3cwv_A          152 GVRVHFVPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRG--ERTLWHLPGGVAQWAHVLTEARPQLHPEPVV  229 (369)
T ss_dssp             EEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--EEEEEECTTHHHHHHHHHHTTSCBSSSSCEE
T ss_pred             CCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCEEEEECCC--CEEEEEECCCHHHHHHHHHCCCCCCCCCCEE
T ss_conf             97899966635544226527888644200443069960002584079--4468973574788999875146623547789


Q ss_pred             EEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEE
Q ss_conf             64200369997334531775412122224621666772103568889999999998624200012357613430572156
Q gi|254780814|r  250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV  329 (803)
Q Consensus       250 ~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~v  329 (803)
                      ++++.+++.||||++|++++.++++||||+|+|++|||||+||++||+++|++|++      +.+.+++++||||||+||
T Consensus       230 ~~~~~~~~~vEval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~k------k~k~~i~~~dIregL~~v  303 (369)
T 3cwv_A          230 FDFTWDGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWARVAQGLTAI  303 (369)
T ss_dssp             EEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEE
T ss_pred             EEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHHCCCEEE
T ss_conf             99776655389999974888623786347874899988688699999999998743------111358788875287899


Q ss_pred             EEEECC--CCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             665213--763357210020261111032111026899998740035799987789998
Q gi|254780814|r  330 LSIKMP--DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS  386 (803)
Q Consensus       330 isvki~--nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~  386 (803)
                      |||+++  ||+|+||||+||+||+|+++|++++.+.|..||++||..|+.|++|++.|.
T Consensus       304 isV~~~~~nP~FegQTKekL~~~~v~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~  362 (369)
T 3cwv_A          304 VAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE  362 (369)
T ss_dssp             EEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred             EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf             99987898998078474761698799999999999999999979899999999998666


No 7  
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00  E-value=0  Score=809.34  Aligned_cols=372  Identities=22%  Similarity=0.329  Sum_probs=307.1

Q ss_pred             CCCCCCHHHCEECCCCCHHCCCCCCEECCCCCC----------------------CHHHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf             223678655123135420004587154327996----------------------3254456567555788686077-97
Q gi|254780814|r    6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVLDNAIDESLEGY-AD   62 (803)
Q Consensus         6 ~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~----------------------~Gl~hlv~EiidNsvDe~~~g~-~~   62 (803)
                      .+..|.++.||+|++|||||||||||||||+..                      .|||||||||||||+||+++|+ |+
T Consensus         8 ~~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~   87 (418)
T 1pvg_A            8 TEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMK   87 (418)
T ss_dssp             ----CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCC
T ss_conf             78876565140466310865399971246788983268863355400002243466002465689998024765168887


Q ss_pred             EEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEE-
Q ss_conf             5799983-89839999768445364077788500125642501132328986048311675203778632644999999-
Q gi|254780814|r   63 IITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK-  140 (803)
Q Consensus        63 ~I~V~i~-~dgsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~-  140 (803)
                      .|+|+|| +||||||+||||||||++||++++|+||+|||+||||||||+++|++||||||||||||||||+||.|+|. 
T Consensus        88 ~I~V~i~~~dgsisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~  167 (418)
T 1pvg_A           88 RIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD  167 (418)
T ss_dssp             EEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE
T ss_conf             79999967998899996990146104366786411578877403554457753040787552640227663565317676


Q ss_pred             -ECCEEEEEEEECCEECCCCEEECC-CCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf             -789599999889836463138732-778887089998778885421000899999999731146416999996358642
Q gi|254780814|r  141 -REGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP  218 (803)
Q Consensus       141 -rdgk~~~q~f~~g~~~~~l~~~~~-~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~  218 (803)
                       |+|+.|.|+|++|++..+++.+.. ...++||+|+|+||++||+...|+++++..|++++|+|++++++.+.+.+..  
T Consensus       168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~--  245 (418)
T 1pvg_A          168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGK--  245 (418)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE--
T ss_pred             CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--
T ss_conf             149879999994684113442010135689953999983856506611116899999999998718750899971687--


Q ss_pred             CEEEECCCCCCHHHHHHHCCCCC-------CCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHH
Q ss_conf             10100126883577653003565-------56885203642003699973345317754121222246216667721035
Q gi|254780814|r  219 REITMFYKGGIEAFVSYLDRHKK-------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG  291 (803)
Q Consensus       219 ~~~~f~~~~Gi~~fv~~l~~~~~-------~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~g  291 (803)
                      ....++|++|+..|+.+++....       +..++++.+..+..+..||||++|++.+.+++ ||||+|+|++|||||+|
T Consensus       246 ~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~~~~~~~~-SfvN~I~T~~GGTHv~g  324 (418)
T 1pvg_A          246 SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQI-SFVNSIATTMGGTHVNY  324 (418)
T ss_dssp             ECCCCSHHHHHHTTTTTC-----------------CCSCEEEEEETTEEEEEEECSSSCEEE-EEETTEECTTCBHHHHH
T ss_pred             CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEE-EEECCCCCCCCCCCHHH
T ss_conf             14662036754640244333300025666665676306876403760899998615650588-73546147999680799


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHH
Q ss_conf             68889999999998624200012357613430572156665213763357210020261111032111026899998740
Q gi|254780814|r  292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH  371 (803)
Q Consensus       292 f~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n  371 (803)
                      |++||+|+|++|+.     |+.+.+++++|||+||++||||+|+||||+||||+||+|+..+-.....+.++   |+...
T Consensus       325 ~~~al~~~i~~~~~-----k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~~---~l~ki  396 (418)
T 1pvg_A          325 ITDQIVKKISEILK-----KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLE---YINKI  396 (418)
T ss_dssp             HHHHHHHHHHHHHC-----C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCHH---HHHHH
T ss_pred             HHHHHHHHHHHHHH-----HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---HHHHH
T ss_conf             99999999998864-----30346789999960929999998489848972027625951105787546299---99998


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             0357999877899988775
Q gi|254780814|r  372 PLEAKIIVKKVLDASMVRD  390 (803)
Q Consensus       372 ~~~ak~i~~k~~~a~~ar~  390 (803)
                      .+  ..|++++++.+++|+
T Consensus       397 ~k--~~i~~~i~~~a~~k~  413 (418)
T 1pvg_A          397 MK--TDLATRMFEIADANE  413 (418)
T ss_dssp             TT--SHHHHHHHHHHHC--
T ss_pred             HH--HHHHHHHHHHHHHHH
T ss_conf             87--799999999998669


No 8  
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C*
Probab=100.00  E-value=0  Score=685.40  Aligned_cols=238  Identities=53%  Similarity=0.878  Sum_probs=219.4

Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHH
Q ss_conf             11001100124676676666555555521799982557543223346544302330056203344305876632366788
Q gi|254780814|r  397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT  476 (803)
Q Consensus       397 ~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~  476 (803)
                      ++.++|++++.++|||||+||+++++++|||||||||||+|||+|||||+|||||||||||||||+++.++|++|+||++
T Consensus        20 ~~~~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~   99 (268)
T 3k9f_C           20 DDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT   99 (268)
T ss_dssp             ----------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHH
T ss_conf             56533101335899852314478996654799977768751300326878789975388637354465989875888889


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC----CEEE
Q ss_conf             887625787753321235673738998508888532899999999963077874895999438337887267----1799
Q gi|254780814|r  477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK----SLQY  552 (803)
Q Consensus       477 l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K----~E~Y  552 (803)
                      |++||||++|++ ||+++||||||||||||||||+||+||||||||+|||+||++|+||+++||||+|++|+    ...|
T Consensus       100 L~~~LGl~~g~~-~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y  178 (268)
T 3k9f_C          100 MIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAY  178 (268)
T ss_dssp             HHHHHCSCC--C-CCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEE
T ss_pred             HHHHHCCCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEE
T ss_conf             998744467887-8743376454899827998858899999999999749970289668953870899936887632677


Q ss_pred             EECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             81457898999850011000014577654354689999999999999998643445799999887421135112357789
Q gi|254780814|r  553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV  632 (803)
Q Consensus       553 ikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~  632 (803)
                      ..++.+++.+.                                                                     
T Consensus       179 ~~~~~~~~~~~---------------------------------------------------------------------  189 (268)
T 3k9f_C          179 AWTDGELEELR---------------------------------------------------------------------  189 (268)
T ss_dssp             ECSHHHHHHHH---------------------------------------------------------------------
T ss_pred             EECCCHHHHHH---------------------------------------------------------------------
T ss_conf             65021458999---------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             99999998876531000011002445670599999518530266466774164278999988887751145502765582
Q gi|254780814|r  633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD  712 (803)
Q Consensus       633 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~  712 (803)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (268)
T 3k9f_C          190 --------------------------------------------------------------------------------  189 (268)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             58739989999999986306762860377778895572230389613402123679889888786564189987628998
Q gi|254780814|r  713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI  792 (803)
Q Consensus       713 ~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFI  792 (803)
                                     ....++.+||||||||||||+|+|||||||++|+|+||+++|+.+|+++|.+|||++|++||+||
T Consensus       190 ---------------~~~~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d~~~~~~~~~~l~gk~~d~RK~wi  254 (268)
T 3k9f_C          190 ---------------KQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWI  254 (268)
T ss_dssp             ---------------HHSCTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             ---------------HHHCCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             ---------------97188862575787787999999998359524689997447478799999987599968999999


Q ss_pred             HHHHHHC
Q ss_conf             8524412
Q gi|254780814|r  793 QENSLPS  799 (803)
Q Consensus       793 e~NAL~v  799 (803)
                      ++||.-+
T Consensus       255 ~~n~~~~  261 (268)
T 3k9f_C          255 EDNVKFT  261 (268)
T ss_dssp             HHHCCCC
T ss_pred             HHHCCHH
T ss_conf             9834302


No 9  
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00  E-value=0  Score=680.81  Aligned_cols=256  Identities=42%  Similarity=0.692  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             77899988775545532110011001246766766665555555217999825575432233465443023300562033
Q gi|254780814|r  380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN  459 (803)
Q Consensus       380 ~k~~~a~~ar~~a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilN  459 (803)
                      +.+++.|++|.  |+ +..++||+++..++|||||+||+++++++|||||||||||+|||++||||+||||||||||+||
T Consensus         2 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~p~kl~d~~~~~~~~~~l~l~EGdSA~g~~~~~rd~~~~~v~plrGK~lN   78 (767)
T 2xkj_E            2 EMAISKAGRRL--KA-AKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN   78 (767)
T ss_dssp             --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC
T ss_pred             HHHHHHHHHHH--HH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf             57999999999--98-8752155556679998644010789966678999777787602001068786788653774031


Q ss_pred             HHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
Q ss_conf             44305876632366788887625787753321235673738998508888532899999999963077874895999438
Q gi|254780814|r  460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP  539 (803)
Q Consensus       460 v~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~p  539 (803)
                      |++|+.++|++|+||++|++||||++|+  +|+++|||||||||||||||||||+||||||||+|||+||++||||+|+|
T Consensus        79 v~~~~~~~~~~N~ei~~l~~~lGl~~~~--~~~~~lrYg~i~imtD~D~DG~hI~~Lll~ff~~~~p~L~~~g~~~~~~t  156 (767)
T 2xkj_E           79 TWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP  156 (767)
T ss_dssp             CTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECC
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEEC
T ss_conf             3258888887269999999997899798--86212777847999789977037999999999987899754796589727


Q ss_pred             CEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33788726717998145789899985001100001457765435468999999999999999864344579999988742
Q gi|254780814|r  540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS  619 (803)
Q Consensus       540 pl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~  619 (803)
                      |||||++||+..|+.|+.|+++++-+..                                                    
T Consensus       157 Pl~k~~~~~~~~~~~~~~e~~~~~~~~~----------------------------------------------------  184 (767)
T 2xkj_E          157 PLFRIDIGKDVHYALDDEELETILKNVK----------------------------------------------------  184 (767)
T ss_dssp             CSEEEEETTEEEEESSHHHHHHHHHTCC----------------------------------------------------
T ss_pred             CEEEEECCCEEEECCCHHHHHHHHHHHC----------------------------------------------------
T ss_conf             6799962986684477699999888723----------------------------------------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             11351123577899999999887653100001100244567059999951853026646677416427899998888775
Q gi|254780814|r  620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE  699 (803)
Q Consensus       620 ~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~  699 (803)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (767)
T 2xkj_E          185 --------------------------------------------------------------------------------  184 (767)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HCCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHH-
Q ss_conf             1145502765582587399899999999863067628603777788955722303896134021236798898887865-
Q gi|254780814|r  700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS-  778 (803)
Q Consensus       700 ~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~-  778 (803)
                                                    +.++.+||||||||||||+|||||||||++|+|.+|.++|+..+++.|. 
T Consensus       185 ------------------------------~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~  234 (767)
T 2xkj_E          185 ------------------------------GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDK  234 (767)
T ss_dssp             ------------------------------SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHH
T ss_pred             ------------------------------CCCCCCCHHCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCHHHHHHHHHH
T ss_conf             ------------------------------79763200013201024699999722843468862356530557999999


Q ss_pred             HHCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             641899876289988524412366
Q gi|254780814|r  779 RLMGDEVEPRREFIQENSLPSALD  802 (803)
Q Consensus       779 ~LMGD~VEPRReFIe~NAL~vNLD  802 (803)
                      .+||+.+++||+||++++-.+.+|
T Consensus       235 ~~~~~~~~~Rk~~l~~~~~~~~~d  258 (767)
T 2xkj_E          235 LLAKKRAADRKQWLEQKGNLADIT  258 (767)
T ss_dssp             HHCGGGHHHHHHHHHHHGGGCC--
T ss_pred             HHCCCCHHHHHHHHHHCCCCCCEE
T ss_conf             865897077999998467412110


No 10 
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00  E-value=0  Score=664.10  Aligned_cols=234  Identities=53%  Similarity=0.845  Sum_probs=212.8

Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             66665555555217999825575432233465443023300562033443058766323667888876257877533212
Q gi|254780814|r  413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI  492 (803)
Q Consensus       413 KL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~  492 (803)
                      -|.||+++||++|||||||||||+|||+|||||+||||||||||+||||+++.++|++|+||++|++||||++|++ ||+
T Consensus         8 ~l~d~~~~~~~~~~L~l~EGDSA~g~a~~grd~~~~gv~PLrGK~lNv~~~~~~ki~~N~Ei~~l~~~lG~~~~~~-~d~   86 (242)
T 3m4i_A            8 HVDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDI   86 (242)
T ss_dssp             -------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGG-CCG
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCC-CCC
T ss_conf             4655567881222899977767401210324778667841589536152243878764268999999966787876-770


Q ss_pred             CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHH
Q ss_conf             35673738998508888532899999999963077874895999438337887267179981457898999850011000
Q gi|254780814|r  493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI  572 (803)
Q Consensus       493 ~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~  572 (803)
                      ++|||||||||||||+||+||+||||||||++||+||++|+|||++||||+|+.+|+..|.....+...+.++...+.. 
T Consensus        87 ~~LRYgkIiimtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~v~i~~~Pl~~vk~~k~~~~~~~~~~~~~~~~~~~~k~~-  165 (242)
T 3m4i_A           87 GKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAG-  165 (242)
T ss_dssp             GGCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHT-
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHC-
T ss_conf             0056461799837885522037789999985478999729768971884589970673387056688999999856630-


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             01457765435468999999999999999864344579999988742113511235778999999998876531000011
Q gi|254780814|r  573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS  652 (803)
Q Consensus       573 l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~  652 (803)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (242)
T 3m4i_A          166 --------------------------------------------------------------------------------  165 (242)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHHHHHHHHC
Q ss_conf             00244567059999951853026646677416427899998888775114550276558258739989999999986306
Q gi|254780814|r  653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK  732 (803)
Q Consensus       653 ~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkK  732 (803)
                                                                                                 ....+
T Consensus       166 ---------------------------------------------------------------------------~~~~k  170 (242)
T 3m4i_A          166 ---------------------------------------------------------------------------KKINK  170 (242)
T ss_dssp             ---------------------------------------------------------------------------CCCCT
T ss_pred             ---------------------------------------------------------------------------CCCCC
T ss_conf             ---------------------------------------------------------------------------44466


Q ss_pred             CCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CCCC
Q ss_conf             7628603777788955722303896134021236798898887865641899876289988524412-3669
Q gi|254780814|r  733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI  803 (803)
Q Consensus       733 G~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v-NLDI  803 (803)
                      +.+||||||||||||+|||||||||++|+|.+|+++|+.+||++|++|||++|++||+||++||.+| ||||
T Consensus       171 ~~~IkyyKGLGe~~~~Elke~~~np~~r~l~~v~~dd~~~ad~~f~~lmgk~ad~RK~wI~~~a~~v~~lDi  242 (242)
T 3m4i_A          171 EDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV  242 (242)
T ss_dssp             TTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC---------------------
T ss_pred             CCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             665210002022689999998449030468873168689999999998189957999999986150542789


No 11 
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00  E-value=0  Score=713.67  Aligned_cols=579  Identities=12%  Similarity=0.073  Sum_probs=462.1

Q ss_pred             CCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCCC----EEEEEECCC
Q ss_conf             2367865512313542000458715432799632544565675557886-86077975799983898----399997684
Q gi|254780814|r    7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNMDG----SCTVSDNGR   81 (803)
Q Consensus         7 ~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe-~~~g~~~~I~V~i~~dg----sisV~dnGr   81 (803)
                      -+.|=|+..+.++..|-..+.+.|.-.||. .+||||+|+|+||||+|+ +.+|||+.|.|+|+.||    +|+|.||||
T Consensus         5 ~~~~~~~~~~~~~~~ef~~~~~~~l~~~~~-~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~   83 (621)
T 2q2e_B            5 IAEELAKKQKSISVAEFFEKNRQILGFDSA-PRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGP   83 (621)
T ss_dssp             ------CCCCCSCSHHHHHHSTTTSSCSSH-HHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf             899998522217899999973767457886-2178998999997188689763999825999996899646999998489


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCE-----EEEEEE--ECCEEEEEEEECCE
Q ss_conf             45364077788500125642501132328986048311675203778632644-----999999--78959999988983
Q gi|254780814|r   82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW-----LKLRIK--REGNIYEMSFINGI  154 (803)
Q Consensus        82 GIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~-----~~v~v~--rdgk~~~q~f~~g~  154 (803)
                      |||++.|+        .+||+||+||||+  .|+.|||+||||+++||++|.+     ++|.+.  ++++.|...|..+.
T Consensus        84 Gm~~d~~~--------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~  153 (621)
T 2q2e_B           84 GIVREQIP--------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINT  153 (621)
T ss_dssp             CCCGGGHH--------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCS
T ss_pred             CCCHHHHH--------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC
T ss_conf             99989999--------9860846677876--6511799766567688887686428638999961798725999841566


Q ss_pred             ECCCCEE-ECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHH
Q ss_conf             6463138-732778887089998778885421000899999999731146416999996358642101001268835776
Q gi|254780814|r  155 LDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV  233 (803)
Q Consensus       155 ~~~~l~~-~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv  233 (803)
                      ....... ...+...+++.++++||...|....+..+.|.+|++++|++||+++|.|.+++..     .+.|+...    
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~-----~~~~~~~~----  224 (621)
T 2q2e_B          154 STNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGN-----EEVFERAT----  224 (621)
T ss_dssp             SSCSCCCCCEEECCCSCSSCCCEEEECSCCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC-----CEEEECCC----
T ss_pred             CCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----EEEEECCC----
T ss_conf             556773110365566444047974022343012268999999999985087856998648997-----06873455----


Q ss_pred             HHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCC-CCCCCEEHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             5300356556885203642003699973345317754121222246216-667721035688899999999986242000
Q gi|254780814|r  234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ-KDGGTHLSGLRSALTRQITSYVEKSFGSKK  312 (803)
Q Consensus       234 ~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T-~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk  312 (803)
                      +.++       +.           ..+|..+|++.+.+.+.+|++++.+ ..+|+|..+|+.+.++.++.|+...++.++
T Consensus       225 e~~~-------~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (621)
T 2q2e_B          225 DKMP-------EP-----------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAGLDPE  286 (621)
T ss_dssp             CCCC-------CC-----------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHTTTCCTT
T ss_pred             CCCC-------CC-----------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf             4579-------86-----------61124088765289999998536777660168764020049999999976588855


Q ss_pred             CC-CCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12-35761343057215666521376335721002026111103211102689999874003579998778999887755
Q gi|254780814|r  313 DK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA  391 (803)
Q Consensus       313 ~k-~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~  391 (803)
                      .+ ..+.++++++++.+++++++++|++++|++  +++...+..+...+...|..|+.++|..++.+.++...+.+++.+
T Consensus       287 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (621)
T 2q2e_B          287 IDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGN  364 (621)
T ss_dssp             SCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEEEEESSS
T ss_pred             CCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHH
T ss_conf             472328999998466115766624896435786--677999999999999999999865977553278999999997205


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCH-HHHHC
Q ss_conf             45532110011001246766766665555555217999825575432233465443023300562033443058-76632
Q gi|254780814|r  392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLS  470 (803)
Q Consensus       392 a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~-~~i~~  470 (803)
                      +.|++...++|.+.....||++++||++++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++.. +.+.-
T Consensus       365 ~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~  444 (621)
T 2q2e_B          365 LPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPVI  444 (621)
T ss_dssp             SCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSBCCCHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             43155156665442355554555555126511200445413465676776640101032443153778888730137889


Q ss_pred             CHHHHHHHHHHCCCCCC---CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH-------HHHHHHHHHHHCCEEEEECCC
Q ss_conf             36678888762578775---33212356737389985088885328999999-------999630778748959994383
Q gi|254780814|r  471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLT-------FFFRQMPSLIHNGFLYIIKPP  540 (803)
Q Consensus       471 n~Ei~~l~~~lG~~~g~---~~~~~~~lrY~kiiimtDaD~DG~HI~~Lllt-------ff~~~~~~li~~g~~yia~pp  540 (803)
                      +++|...+..+|.+++.   +.++....+|.+++||+|+|.+|.||++||.+       +|+|+|+.|+..|++|+|+||
T Consensus       445 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v~~~~~~  524 (621)
T 2q2e_B          445 KEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDG  524 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             99999999999886502132256688888756766554157899999986141256789999985454004358966688


Q ss_pred             EEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             37887267179981457898999850011000014577654354689999999999999998643445799999887421
Q gi|254780814|r  541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG  620 (803)
Q Consensus       541 l~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~  620 (803)
                      ||++.......+..++..            ...                                               
T Consensus       525 l~~~~~~~~~~~~~~~~~------------~~~-----------------------------------------------  545 (621)
T 2q2e_B          525 TVDVAIKVKNFGTSAYSF------------RVH-----------------------------------------------  545 (621)
T ss_dssp             CEEEEEEECC----CCCE------------EEC-----------------------------------------------
T ss_pred             CCCEEEEEHHHHHHHHHH------------HHH-----------------------------------------------
T ss_conf             764578623132167659------------999-----------------------------------------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             13511235778999999998876531000011002445670599999518530266466774164278999988887751
Q gi|254780814|r  621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN  700 (803)
Q Consensus       621 ~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~  700 (803)
                                                    ...                                               
T Consensus       546 ------------------------------~~~-----------------------------------------------  548 (621)
T 2q2e_B          546 ------------------------------EML-----------------------------------------------  548 (621)
T ss_dssp             ------------------------------CEE-----------------------------------------------
T ss_pred             ------------------------------HHH-----------------------------------------------
T ss_conf             ------------------------------852-----------------------------------------------


Q ss_pred             CCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECC-CCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHH-HHHH
Q ss_conf             1455027655825873998999999998630676286037-7778895572230389613402123679889888-7865
Q gi|254780814|r  701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK-GLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-DLFS  778 (803)
Q Consensus       701 ~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYK-GLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad-~iF~  778 (803)
                                                 ....++ ..||++ |++||||+|||||||||++|+|+||+++|+.++| ..+.
T Consensus       549 ---------------------------~~~~~~-~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~~~~~~  600 (621)
T 2q2e_B          549 ---------------------------PCKVSG-AKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLP  600 (621)
T ss_dssp             ---------------------------SCCC----CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGSCCCCC
T ss_pred             ---------------------------HHCCCC-CHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCCHHHHH
T ss_conf             ---------------------------311443-2000133466788778877333867724899984670225244427


Q ss_pred             HHCCCCCCCHH
Q ss_conf             64189987628
Q gi|254780814|r  779 RLMGDEVEPRR  789 (803)
Q Consensus       779 ~LMGD~VEPRR  789 (803)
                      .||++.|+||.
T Consensus       601 ~l~~~~v~~~~  611 (621)
T 2q2e_B          601 QLIVEGIEEEL  611 (621)
T ss_dssp             BBCC-------
T ss_pred             HHHHCCCCHHH
T ss_conf             87748658656


No 12 
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00  E-value=0  Score=574.31  Aligned_cols=226  Identities=29%  Similarity=0.439  Sum_probs=202.4

Q ss_pred             CCCCCCCCCCCC---CCCCCCEEEEEEECCCC-----CCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHH
Q ss_conf             467667666655---55555217999825575-----4322334654430233005620334430587663236678888
Q gi|254780814|r  407 IASLPGKLADCS---ERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI  478 (803)
Q Consensus       407 ~~~lpgKL~Dc~---~k~~~~~eL~ivEGDSA-----ggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~  478 (803)
                      ..++| ||.||+   ++++++|||||||||||     +|++++|||  ||||||||||||||++|+.+||++|+||++|+
T Consensus         3 ~~~~p-kl~da~~ag~~~~~~~~L~l~EGdSA~~~~~~g~~~~~rd--~~g~~plrGK~lN~~~~~~~~~~~n~ei~~l~   79 (757)
T 3l4j_A            3 ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIK   79 (757)
T ss_dssp             CCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCST--TEEEEEECSSCCCCTTCCHHHHHHCHHHHHHH
T ss_pred             CCCCC-CHHHHHHHCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCC--CEEEEECCCCEEECCCCCHHHHHHCHHHHHHH
T ss_conf             67987-6555654079986451799965758522112765321664--37885337733001469888886159999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCEEEEEE---CCCEEEEE
Q ss_conf             7625787753321235673738998508888532899999999963077874-8959994383378872---67179981
Q gi|254780814|r  479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR---GKSLQYVK  554 (803)
Q Consensus       479 ~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~-~g~~yia~ppl~~~~~---~K~E~Yik  554 (803)
                      +||||++|+++.|+++||||||||||||||||+||+||||||||+|||+|++ +||||+++||||||+.   +|...++.
T Consensus        80 ~~lG~~~~~~~~~~~~lrYg~i~imtD~D~DG~hI~~Ll~~~f~~~~p~L~~~~g~i~~~~tPl~~~~~~~~~~~~~~fy  159 (757)
T 3l4j_A           80 KIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFY  159 (757)
T ss_dssp             HHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEES
T ss_pred             HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCEEEEEECCCCCCEEECC
T ss_conf             99778979887861127768589998788870379999999998868897355998999969829998068875011033


Q ss_pred             CHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             45789899985001100001457765435468999999999999999864344579999988742113511235778999
Q gi|254780814|r  555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL  634 (803)
Q Consensus       555 DD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~  634 (803)
                      +..|.+.+.-..                                                                    
T Consensus       160 ~~~e~~~~~~~~--------------------------------------------------------------------  171 (757)
T 3l4j_A          160 NMPDYEKWREEE--------------------------------------------------------------------  171 (757)
T ss_dssp             SHHHHHHHHHHT--------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHH--------------------------------------------------------------------
T ss_conf             254999987651--------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEE
Q ss_conf             99999887653100001100244567059999951853026646677416427899998888775114550276558258
Q gi|254780814|r  635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI  714 (803)
Q Consensus       635 ~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  714 (803)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (757)
T 3l4j_A          172 --------------------------------------------------------------------------------  171 (757)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             EECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             73998999999998630676286037777889557223038961340212367988988878656418998762899885
Q gi|254780814|r  715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE  794 (803)
Q Consensus       715 ~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~  794 (803)
                                    ..+++..||||||||||||+|||||||||++|++.+++++|+ .++.++..+||+.+++||+||++
T Consensus       172 --------------~~~~~~~i~yyKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~F~k~~~~~RK~wL~~  236 (757)
T 3l4j_A          172 --------------SHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-DKDYIDLAFSKKKADDRKEWLRQ  236 (757)
T ss_dssp             --------------GGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTT-HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             --------------CCCCCCCCEEECCCCCCCHHHHHHEECCCCCCEEEEEECCCH-HHHHHHHHHHCCCCHHHHHHHHC
T ss_conf             --------------677643200104767676011244001554336999964615-78899999721353058999742


Q ss_pred             HHHH
Q ss_conf             2441
Q gi|254780814|r  795 NSLP  798 (803)
Q Consensus       795 NAL~  798 (803)
                      +--.
T Consensus       237 ~~~~  240 (757)
T 3l4j_A          237 YEPG  240 (757)
T ss_dssp             CCTT
T ss_pred             CCCC
T ss_conf             6654


No 13 
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00  E-value=0  Score=563.21  Aligned_cols=198  Identities=67%  Similarity=1.112  Sum_probs=192.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCC
Q ss_conf             12467667666655555552179998255754322334654430233005620334430587663236678888762578
Q gi|254780814|r  405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG  484 (803)
Q Consensus       405 ~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~  484 (803)
                      |+.++|||||+||+++++++|||||||||||+|+|++||||.||||||||||+||||+|+.+||++|+||++|++||||+
T Consensus         1 ~~~~~~p~KL~d~~t~~~~~ctLiltEGDSA~g~~~~grd~~~~gvfpLrGK~lNv~~~~~~~i~~N~Ei~~i~~ilGl~   80 (692)
T 2xcs_B            1 MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG   80 (692)
T ss_dssp             --------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             98678997401017899666689997763550100001687867887537841203369888987579999999997899


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHH
Q ss_conf             77533212356737389985088885328999999999630778748959994383378872671799814578989998
Q gi|254780814|r  485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI  564 (803)
Q Consensus       485 ~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll  564 (803)
                      +|++ ||+++|||||||||||||+|||||++|||||||+|||+|+++||||+++||                        
T Consensus        81 ~~~~-yd~~~lRYg~i~imtDqD~DG~hIkgLlin~f~~~~p~L~~~g~~~~~~tP------------------------  135 (692)
T 2xcs_B           81 IGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP------------------------  135 (692)
T ss_dssp             CGGG-CCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCC------------------------
T ss_pred             CCCC-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECC------------------------
T ss_conf             8997-776667768589998799883079999999999868897852956899897------------------------


Q ss_pred             HHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             50011000014577654354689999999999999998643445799999887421135112357789999999988765
Q gi|254780814|r  565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF  644 (803)
Q Consensus       565 ~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~  644 (803)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (692)
T 2xcs_B          136 --------------------------------------------------------------------------------  135 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHH
Q ss_conf             31000011002445670599999518530266466774164278999988887751145502765582587399899999
Q gi|254780814|r  645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD  724 (803)
Q Consensus       645 ~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~  724 (803)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (692)
T 2xcs_B          136 --------------------------------------------------------------------------------  135 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             999863067628603777788955722303896134021236798898887865641899876289988524412
Q gi|254780814|r  725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS  799 (803)
Q Consensus       725 ~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v  799 (803)
                                  |||||||||+|.|+|+|||||++|.+.+|++.|+.+|++.|..|||+.+++||+|+.++|...
T Consensus       136 ------------~~~k~~~~~~~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~  198 (692)
T 2xcs_B          136 ------------TGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA  198 (692)
T ss_dssp             ------------SSCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCC
T ss_pred             ------------EEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHH
T ss_conf             ------------534416657878999870485653589999467652789999983754236676654223011


No 14 
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00  E-value=0  Score=542.31  Aligned_cols=200  Identities=44%  Similarity=0.767  Sum_probs=191.1

Q ss_pred             CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             54200045871543279963254456567555788686077975799983898399997684453640777885001256
Q gi|254780814|r   20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI   99 (803)
Q Consensus        20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i   99 (803)
                      ||||||||||||||||    |||||+||||||||||+++|||+.|.|+++.||||||+||||||||++||++++|+||+|
T Consensus         1 glE~Vr~RPgMYiGs~----gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~sitV~d~GrGIPv~~h~~~~~~~~e~i   76 (201)
T 3fv5_A            1 GLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELI   76 (201)
T ss_dssp             CCHHHHHCGGGTSCTT----STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHH
T ss_pred             CCHHHHCCCCCEECCC----CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCEEEEE
T ss_conf             9567621897268998----877078688881354875489837999991898099999789646858677897145999


Q ss_pred             EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-CCCCEEEEEEEC
Q ss_conf             4250113232898604831167520377863264499999978959999988983646313873277-888708999877
Q gi|254780814|r  100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPS  178 (803)
Q Consensus       100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~~~GT~I~F~PD  178 (803)
                      ||+||||||||+++|++||||||||+|||||||++|+|+|+|+|++|+|+|++|++..+++.++.+. +++||+|+|+||
T Consensus        77 ~t~l~ag~~fd~~~~k~sgG~~GvG~~~vNalS~~~~v~v~r~g~~~~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD  156 (201)
T 3fv5_A           77 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD  156 (201)
T ss_dssp             HHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEECC
T ss_conf             99970357678876411377576052344765161699994189899999839930676348741467898499999788


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECC
Q ss_conf             88854210008999999997311464169999963586421010012
Q gi|254780814|r  179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY  225 (803)
Q Consensus       179 ~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~  225 (803)
                      +++|++..|++++|.+|++++|||||||+|+|+|||.++  +.+|||
T Consensus       157 ~~iF~~~~~~~d~l~~rl~~~A~L~~Gl~i~~~Der~~~--~~~f~y  201 (201)
T 3fv5_A          157 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCY  201 (201)
T ss_dssp             GGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTE--EEEECC
T ss_pred             HHHCCCCEECHHHHHHHHHHHHCCCCCCEEEEEECCCCC--EEEEEC
T ss_conf             432375589799999999999604799789999847896--888889


No 15 
>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A*
Probab=100.00  E-value=0  Score=521.27  Aligned_cols=202  Identities=61%  Similarity=0.944  Sum_probs=192.0

Q ss_pred             CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             54200045871543279963254456567555788686077975799983898399997684453640777885001256
Q gi|254780814|r   20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI   99 (803)
Q Consensus        20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i   99 (803)
                      ||||||||||||||||+..+|||||+|||||||+||+++|+|+.|.|+++.||+|||+||||||||++||++++|+||+|
T Consensus         1 glEhVr~RP~mYiGs~~~~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg~isV~ddG~GIPv~~h~~~~~~~~eli   80 (203)
T 3g7e_A            1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI   80 (203)
T ss_dssp             CHHHHHHSGGGTTCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSCCTTTCCCHHHHH
T ss_pred             CCHHHHCCCCCEECCCCCCCCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
T ss_conf             95567408988881378887274899988883445631599976899996799799998997745644576698220689


Q ss_pred             EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEEECH
Q ss_conf             42501132328986048311675203778632644999999789599999889836463138732778887089998778
Q gi|254780814|r  100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS  179 (803)
Q Consensus       100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~  179 (803)
                      ||+||||+|||+++|++|||+||||+|||||||+||+|+++|+|+.|.|+|++|++..|++.++++ +++||+|+|+||+
T Consensus        81 f~~l~tg~nyd~~~~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~-~~~gT~V~F~PD~  159 (203)
T 3g7e_A           81 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSL  159 (203)
T ss_dssp             HHSTTCCSEECTTCCEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEECT
T ss_pred             EEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCEEEEEEECC
T ss_conf             989840477888861311675786728989862189999998999999998499298882352576-8998899999793


Q ss_pred             HHHHH-HHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEC
Q ss_conf             88542-1000899999999731146416999996358642101001
Q gi|254780814|r  180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF  224 (803)
Q Consensus       180 ~iF~~-~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~  224 (803)
                      ++|.. ..|++++|.+|++++|||||||+|+|+|||.+  ++..||
T Consensus       160 ~~F~~~~~~~~~~l~~r~~~~A~l~~gl~v~~nder~~--~e~~fh  203 (203)
T 3g7e_A          160 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFH  203 (203)
T ss_dssp             TTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC--CEEEEC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC--CCEEEC
T ss_conf             10267541479999999999813589858999964789--733529


No 16 
>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A*
Probab=100.00  E-value=0  Score=479.10  Aligned_cols=182  Identities=47%  Similarity=0.801  Sum_probs=172.0

Q ss_pred             CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf             54200045871543279963254456567555788686077975799983898399997684453640777885001256
Q gi|254780814|r   20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI   99 (803)
Q Consensus        20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i   99 (803)
                      ||||||||||||||||+ .+|||||+|||||||||||++|||+.|.|++++||||||+||||||||++||++++|++|+|
T Consensus         1 glE~Vr~RPgMYiGst~-~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~si~V~D~GRGIPvd~h~~~~~~~~e~i   79 (184)
T 3g75_A            1 GLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVI   79 (184)
T ss_dssp             CTTTTTTCHHHHTSCSS-HHHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGCEEEEECSSCCCCCBCTTTSCBHHHHH
T ss_pred             CCHHHHHCCCCEECCCC-CCCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHEE
T ss_conf             95677208997766699-85222331011135665875597754599996899699999357751110245797513188


Q ss_pred             EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEEECH
Q ss_conf             42501132328986048311675203778632644999999789599999889836463138732778887089998778
Q gi|254780814|r  100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS  179 (803)
Q Consensus       100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~  179 (803)
                      ||                       +|||||||+||+|+|+|||+.|.|+|++|++..+++.++++ +++||+|+|+||+
T Consensus        80 ~t-----------------------~svvNALS~~l~v~v~rdgk~~~q~f~~G~~~~~l~~~~~~-~~~GT~I~F~PD~  135 (184)
T 3g75_A           80 LT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTT-DKTGTVIRFKADG  135 (184)
T ss_dssp             HT-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEECT
T ss_pred             EE-----------------------EEEEEECCCEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCCEEEEECCC
T ss_conf             76-----------------------89947168849999998999999996798799873365776-7997599998990


Q ss_pred             HHHH-HHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCEEEECCC
Q ss_conf             8854-2100089999999973114641699999635864-210100126
Q gi|254780814|r  180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-PREITMFYK  226 (803)
Q Consensus       180 ~iF~-~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~-~~~~~f~~~  226 (803)
                      ++|. ...|++++|.+|++++|||||||+|.|+|+|.+. .++.+|||+
T Consensus       136 ~iF~~~~~~~~~~l~~rl~~~A~Ln~Gl~i~l~d~r~~~~~~~~~f~ye  184 (184)
T 3g75_A          136 EIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYE  184 (184)
T ss_dssp             TTSCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTEEEEEEECCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEECC
T ss_conf             3135665258999999999973168987999997268988651777539


No 17 
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.54  E-value=5.9e-13  Score=118.01  Aligned_cols=182  Identities=18%  Similarity=0.261  Sum_probs=125.0

Q ss_pred             EECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC--CC----EEEEEECCCCCCCCCC
Q ss_conf             23135420004587154327996325445656755578868-60779757999838--98----3999976844536407
Q gi|254780814|r   16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM--DG----SCTVSDNGRGIPTDLH   88 (803)
Q Consensus        16 ~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~--dg----sisV~dnGrGIPv~~h   88 (803)
                      +.++-.|--.+-..| .|-.+..+.|++.|.|+||||+|.. -+|.+..|.|+|..  ++    .|+|.|||.|||.+..
T Consensus         9 ~~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i   87 (471)
T 1mu5_A            9 TSLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV   87 (471)
T ss_dssp             --CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH
T ss_pred             HHCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH
T ss_conf             645999998863564-2778702169999999999999978855998716999997368886899999962899999999


Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCC-----EEEEEEEECC--EEEEEEEEC----CEECC
Q ss_conf             778850012564250113232898604831167520377863264-----4999999789--599999889----83646
Q gi|254780814|r   89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS-----WLKLRIKREG--NIYEMSFIN----GILDN  157 (803)
Q Consensus        89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~-----~~~v~v~rdg--k~~~q~f~~----g~~~~  157 (803)
                              ..||+.+++|+||...   -++|..|+|++.+..+|.     .++|+....+  +.|...+.-    +.+..
T Consensus        88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i  156 (471)
T 1mu5_A           88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII  156 (471)
T ss_dssp             --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE
T ss_pred             --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC
T ss_conf             --------9986502625676650---36896213489999999973794699999448997379987322135677656


Q ss_pred             C-CEEECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             3-1387327788870899987788854210008999999997311464169999963
Q gi|254780814|r  158 P-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK  213 (803)
Q Consensus       158 ~-l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De  213 (803)
                      . ...+......+||.|++..+......    ...+...++..|..||-++|+|.+.
T Consensus       157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~~----~~~i~eyl~rtAi~nPha~i~~~~p  209 (471)
T 1mu5_A          157 VERGSVENTRGFHGTSVAISIPGDWPKA----KSRIYEYIKRTYIITPYAEFIFKDP  209 (471)
T ss_dssp             EEEEEEECCTTCCEEEEEEEEECCHHHH----HHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred             CCCEEEECCCCCCCEEEEEEECCHHHHH----HHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             7870660576667716998503017777----7789999988764088718999869


No 18 
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.52  E-value=4.8e-12  Score=110.97  Aligned_cols=160  Identities=19%  Similarity=0.245  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCC
Q ss_conf             63254456567555788686077975799983898--399997684453640777885001256425011323---2898
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK---FNQK  112 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~k---fd~~  112 (803)
                      ...+...|.|+|+||+|   || |+.|.|.|...|  +|.|.|||.|||.+--        ++++.. |+-+|   |+|-
T Consensus        23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~d~--------~~~~~r-~~TSK~~~~~dl   89 (367)
T 3h4l_A           23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPSNY--------EFLALK-HYTSKIAKFQDV   89 (367)
T ss_dssp             CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGGGT--------TTTTCC-EEC---------
T ss_pred             ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHHHH-CCCCCCCCCCCC
T ss_conf             46889999999977764---89-598999998798469999989998897899--------876542-058755532233


Q ss_pred             CCEEECCCCCCEEEEEEECCCEEEEEEE-ECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEE----ECHHH---H-H
Q ss_conf             6048311675203778632644999999-789599999889836463138732778887089998----77888---5-4
Q gi|254780814|r  113 SYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL----PSSDI---F-S  183 (803)
Q Consensus       113 ~yk~sgGlhGvG~s~vNalS~~~~v~v~-rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~----PD~~i---F-~  183 (803)
                      ..--|.|..|.+.+...+.|+ +++..+ ++...+...|..+......+   .+....||+|+..    .-|.+   | .
T Consensus        90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GTtV~V~dLF~n~PvRrk~~~k  165 (367)
T 3h4l_A           90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSKT---TTSRNKGTTVLVSQLFHNLPVRQKEFSK  165 (367)
T ss_dssp             CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEEE---EECCSSEEEEEEESTTTTCHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCCC---CCCCCCCCCEEEECCCCCCHHHHHHHHC
T ss_conf             112466644078998875256-479985058763349998337522235---4345666634632030587677887650


Q ss_pred             HHHCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf             2100089999999973114641699999635
Q gi|254780814|r  184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR  214 (803)
Q Consensus       184 ~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der  214 (803)
                      ...-.+..+.+.++.+|..+|++++.+.+..
T Consensus       166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~~~  196 (367)
T 3h4l_A          166 TFKRQFTKCLTVIQGYAIINAAIKFSVWNIT  196 (367)
T ss_dssp             THHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             1026777778898644324797069998633


No 19 
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.36  E-value=1.1e-11  Score=108.07  Aligned_cols=192  Identities=19%  Similarity=0.224  Sum_probs=128.9

Q ss_pred             CCCCCCCCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEE
Q ss_conf             987642236786551231354200045871543279963254456567555788686077975799983898--399997
Q gi|254780814|r    1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSD   78 (803)
Q Consensus         1 m~~~~~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~d   78 (803)
                      |-.......=.+.+|+.|..--.-+.+-|-.|      +-+...|.|+|+||+|   || |+.|.|.++.+|  +|+|.|
T Consensus         1 ~~~~~~~~~~~~~~I~~L~~~~~~~i~s~~vi------~~~~svvkELieNSiD---A~-At~I~I~v~~~g~~~I~V~D   70 (365)
T 1h7s_A            1 MERAESSSTEPAKAIKPIDRKSVHQICSGQVV------LSLSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSD   70 (365)
T ss_dssp             ----------------------------CEEE------CCHHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEECCHHHHHHHCCCCEE------CCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEE
T ss_conf             99888899999877761998999882897734------6888999999977872---89-88899999879843899998


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCCCCEEECCCCCCEEEEEEECCCEEEEEEEE-CCE-EEEEEEECC
Q ss_conf             684453640777885001256425011323---289860483116752037786326449999997-895-999998898
Q gi|254780814|r   79 NGRGIPTDLHKEEGISAAEVIMTRLHAGGK---FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGN-IYEMSFING  153 (803)
Q Consensus        79 nGrGIPv~~h~~~~~~~~E~i~t~L~ag~k---fd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~r-dgk-~~~q~f~~g  153 (803)
                      ||.|||-+--        +++... |+.+|   |++-....|.|.+|.+.+...+.|. +++.+++ ++. .|...|.++
T Consensus        71 nG~Gi~~~dl--------~~~~~~-~~tsk~~~~~d~~~~~t~GfRGeaL~si~~~s~-~~i~S~~~~~~~~~~~~~~~~  140 (365)
T 1h7s_A           71 NGCGVEEENF--------EGLTLK-HHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHN  140 (365)
T ss_dssp             CSCCCCGGGS--------GGGGC-----------CCTTCSEEESSSSSHHHHHHHHSE-EEEEEECTTCSSCEEEEECTT
T ss_pred             CCCCCCHHHH--------HHHHHH-HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEECCCCCHHEEEEEECC
T ss_conf             9987598998--------645420-236776623365334557742278888886245-158884389743349998246


Q ss_pred             EECCCCEEECCCCCCCCEEEEEE----ECHH---HH-HHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf             36463138732778887089998----7788---85-421000899999999731146416999996358
Q gi|254780814|r  154 ILDNPLVVTGSAGNDTGTEVTFL----PSSD---IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS  215 (803)
Q Consensus       154 ~~~~~l~~~~~~~~~~GT~I~F~----PD~~---iF-~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~  215 (803)
                      ....   ..++.+...||+|+..    .-|.   .| ......+..+.+.++.+|..+|+++|.|.+...
T Consensus       141 ~~~~---~~~~~~~~~GTtV~v~~lF~n~PvRrk~~~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~~~  207 (365)
T 1h7s_A          141 GKII---QKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLG  207 (365)
T ss_dssp             SCEE---EEEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECT
T ss_pred             CCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             6532---235644678758999613357722433213520589999999876552227964799997367


No 20 
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.35  E-value=1.7e-10  Score=98.99  Aligned_cols=259  Identities=15%  Similarity=0.185  Sum_probs=147.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC---CCC
Q ss_conf             3254456567555788686077975799983898--39999768445364077788500125642501132328---986
Q gi|254780814|r   39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN---QKS  113 (803)
Q Consensus        39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd---~~~  113 (803)
                      ..+...|.|+|+||+|   || |+.|.|.|+.+|  +|.|.|||.|||-+-.+        + .+.-|+-+|..   +-.
T Consensus        27 ~~~~s~vkELieNsiD---A~-At~I~i~i~~~g~~~I~V~DnG~Gi~~~dl~--------~-~~~~~~tSK~~~~~dl~   93 (348)
T 3na3_A           27 QRPANAIKEMIENCLD---AK-STSIQVIVKEGGLKLIQIQDNGTGIRKEDLD--------I-VCERFTTSKLQSFEDLA   93 (348)
T ss_dssp             CSHHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEECSCCCCGGGGG--------T-TTSTTCCSSCCCC----
T ss_pred             CCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHHH--------H-HHHCCCCCCCCCHHHHH
T ss_conf             5889999999865544---89-9889999998987899999899888989999--------9-97524576778755422


Q ss_pred             CEEECCCCCCEEEEEEECCCEEEEEEEEC--CEEEEEEEECCEECCCCEEECCCCCCCCEEEEE------EECHHHH-HH
Q ss_conf             04831167520377863264499999978--959999988983646313873277888708999------8778885-42
Q gi|254780814|r  114 YKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF------LPSSDIF-SV  184 (803)
Q Consensus       114 yk~sgGlhGvG~s~vNalS~~~~v~v~rd--gk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F------~PD~~iF-~~  184 (803)
                      -.-|.|..|.+.+....+|. +++..+..  ...|...|.+|....+....   ....||+|+.      .|=...| ..
T Consensus        94 ~~~t~GfRGeAL~sI~~~s~-~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~GTtV~V~nLF~n~PvRrk~lk~  169 (348)
T 3na3_A           94 SISTYGFRGEALASISHVAH-VTITTKTADGKCAYRASYSDGKLKAPPKPC---AGNQGTQITVEDLFYNIATRRKALKN  169 (348)
T ss_dssp             -----CCTTCHHHHHHHSSE-EEEEEECTTCSSEEEEEEETTEESSCCEEE---CCCSEEEEEEESTTTTCHHHHHTSCC
T ss_pred             HCCCCCCCHHHHHHHHHHCC-EEEEEECCCCCCCCEEEEECCCCEEECCCC---CCCCCCEEEECCCCCCCCHHHHHCCC
T ss_conf             10266632899999985177-499961256764617998068623404423---46776579870022675255531258


Q ss_pred             HHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEC--CCCCCHHHHHHHCCCCCCCCCC--CEEEEEEEEEEEEE
Q ss_conf             1000899999999731146416999996358642101001--2688357765300356556885--20364200369997
Q gi|254780814|r  185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQS--PIRIQGSRDNISID  260 (803)
Q Consensus       185 ~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~--~~~Gi~~fv~~l~~~~~~~~~~--~i~~~~~~~~~~ve  260 (803)
                      .......+.+.+..+|..+|.+.+.|....  +. ...+.  ....+.+-+..+-+..  +...  ++.+..+...+.++
T Consensus       170 ~~~e~~~i~~~i~~~AL~~p~I~F~l~~~g--k~-~~~~~~~~~~~~~~~i~~v~G~~--~~~~~~~~~~~~~~~~~~i~  244 (348)
T 3na3_A          170 PSEEYGKILEVVGRYSVHNAGISFSVKKQG--ET-VADVRTLPNASTVDNIRSIFGNA--VSRELIEIGCEDKTLAFKMN  244 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEEEETT--CS-SCSEECCTTCCHHHHHHHHHCHH--HHTTEEEEEEEEGGGTEEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEECC--EE-EEEEECCCCCCHHHHHHHHHCHH--HHHHCCCCCCCCCCCCEEEE
T ss_conf             189999999999998625999649999999--99-99986599978999999874736--56510343333466531230


Q ss_pred             EEEEECC--CCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCC
Q ss_conf             3345317--75412122224621666772103568889999999998624200012357613430572156665213763
Q gi|254780814|r  261 LAMRWND--GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR  338 (803)
Q Consensus       261 val~~~~--~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~nP~  338 (803)
                      ..+.-.+  .-....+-|||+-+-...+         |.++|++-.... +.+..           .=.+++++.+|.-.
T Consensus       245 g~is~p~~~~~~~~q~~fVN~R~V~~~~---------l~~aI~~~y~~~-l~~~~-----------~P~~vL~i~~p~~~  303 (348)
T 3na3_A          245 GYISNANYSVKKCIFLLFINHRLVESTS---------LRKAIETVYAAY-LPKNT-----------HPFLYLSLEISPQN  303 (348)
T ss_dssp             EEEECSSCCBSSCEEEEEETTEECCCTT---------HHHHHHHHHHTT-SCTTC-----------BCEEEEEEECC---
T ss_pred             CCCCCCCCCCCCCCEEEEECCCEECCHH---------HHHHHHHHHHHH-CCCCC-----------CEEEEEEEEECCHH
T ss_conf             3426865466776179999187325679---------999999999975-75898-----------62999999947133


Q ss_pred             CC
Q ss_conf             35
Q gi|254780814|r  339 FS  340 (803)
Q Consensus       339 F~  340 (803)
                      .|
T Consensus       304 iD  305 (348)
T 3na3_A          304 VD  305 (348)
T ss_dssp             --
T ss_pred             EE
T ss_conf             77


No 21 
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.94  E-value=2.6e-08  Score=81.98  Aligned_cols=260  Identities=15%  Similarity=0.180  Sum_probs=141.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC--
Q ss_conf             63254456567555788686077975799983898--39999768445364077788500125642501132328986--
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--  113 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~--  113 (803)
                      .+.+...|-|+|+||+|-    .|+.|.|.++..|  .|.|.|||.|||.+-.        .+ ++.-|+-+|...-+  
T Consensus        22 I~~~~~~vkELveNSiDA----~At~I~I~v~~~g~~~I~V~DnG~GI~~~dl--------~~-~~~r~~TSK~~~~~dl   88 (333)
T 1b63_A           22 VERPASVVKELVENSLDA----GATRIDIDIERGGAKLIRIRDNGCGIKKDEL--------AL-ALARHATSKIASLDDL   88 (333)
T ss_dssp             CSSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGH--------HH-HHSTTCCSSCCSHHHH
T ss_pred             ECCHHHHHHHHHHHHCCC----CCCEEEEEEECCCEEEEEEEECCCCCCHHHH--------HH-HHHHHCCCCCCCHHHH
T ss_conf             547899999998630278----9898999998797659999989967687688--------88-7664105778997885


Q ss_pred             -CEEECCCCCCEEEEEEECCCEEEEEEEECC--EEEEEEEECCEECCCCEEECCCCCCCCEEEEEE----ECHHHHH---
Q ss_conf             -048311675203778632644999999789--599999889836463138732778887089998----7788854---
Q gi|254780814|r  114 -YKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL----PSSDIFS---  183 (803)
Q Consensus       114 -yk~sgGlhGvG~s~vNalS~~~~v~v~rdg--k~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~----PD~~iF~---  183 (803)
                       --.|=|-.|-..+....+| .+++++++.+  .-|...+..+....+.   .++....||+|+-.    .-|.+-.   
T Consensus        89 ~~~~t~GFRGEAL~Si~~vs-~l~I~sr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~GTtV~V~~LF~n~PvRrk~l~  164 (333)
T 1b63_A           89 EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTV---KPAAHPVGTTLEVLDLFYNTPARRKFLR  164 (333)
T ss_dssp             HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEE---EEECCCSEEEEEEESTTTTCHHHHHTCC
T ss_pred             HHHHHCCCCHHHHHHHHHHC-CCEEEEECCCCCCEEEEEEECCCCCCCE---EECCCCCCCEEEECHHHCCCHHHHHHCC
T ss_conf             56652275507999999850-8544334289884499999547764440---2536899968996043273857775258


Q ss_pred             HHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHH---HHCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             210008999999997311464169999963586421010012688357765---30035655688520364200369997
Q gi|254780814|r  184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS---YLDRHKKPLMQSPIRIQGSRDNISID  260 (803)
Q Consensus       184 ~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~---~l~~~~~~~~~~~i~~~~~~~~~~ve  260 (803)
                      ...-.+..+.+.+...|..+|.+.+.+..+.  +. ...+....+..++..   .+-..  ......+.+..+.+.+.++
T Consensus       165 ~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~~--k~-~~~~~~~~~~~~~~~~i~~v~g~--~~~~~~~~~~~~~~~~~i~  239 (333)
T 1b63_A          165 TEKTEFNHIDEIIRRIALARFDVTINLSHNG--KI-VRQYRAVPEGGQKERRLGAICGT--AFLEQALAIEWQHGDLTLR  239 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTCEEEEEETT--EE-EEEECCCCTTCCTHHHHHHHHCH--HHHHHEEEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CC-EEEEECCCCCCCHHHHHHHHCCH--HHHHHEEEEEECCCCCEEE
T ss_conf             8488899999999873326884799999788--31-15663368985288777653120--4333124432002552253


Q ss_pred             EEEEEC----CCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCC
Q ss_conf             334531----7754121222246216667721035688899999999986242000123576134305721566652137
Q gi|254780814|r  261 LAMRWN----DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD  336 (803)
Q Consensus       261 val~~~----~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~n  336 (803)
                      .-+.-.    -......+-|||+-+-..         ..|.++|++-.... +.+..           .=.+++++.+|.
T Consensus       240 G~is~p~~~~~~~~~~q~~fVN~R~v~~---------~~l~~aI~~~y~~~-~~~~~-----------~P~~vL~i~~p~  298 (333)
T 1b63_A          240 GWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACEDK-LGADQ-----------QPAFVLYLEIDP  298 (333)
T ss_dssp             EEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHHH-SSSCC-----------CCCEEEEEECCG
T ss_pred             EEECCCCCCCCCCCCEEEEEECCCCCCC---------HHHHHHHHHHHHHH-CCCCC-----------CEEEEEEEEECC
T ss_conf             3543864232434653699966851146---------89999999998854-65888-----------808999999371


Q ss_pred             CCCC
Q ss_conf             6335
Q gi|254780814|r  337 PRFS  340 (803)
Q Consensus       337 P~F~  340 (803)
                      -..|
T Consensus       299 ~~iD  302 (333)
T 1b63_A          299 HQVD  302 (333)
T ss_dssp             GGEE
T ss_pred             HHEE
T ss_conf             4264


No 22 
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.81  E-value=6.9e-09  Score=86.45  Aligned_cols=116  Identities=22%  Similarity=0.366  Sum_probs=82.0

Q ss_pred             CEECCCCCHHCCCCCCEEC-CCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCC---C---EEEEEECCCCCCCC
Q ss_conf             1231354200045871543-2799632544565675557886-8607797579998389---8---39999768445364
Q gi|254780814|r   15 IQILKGLDAVKKRPSMYIG-DTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNMD---G---SCTVSDNGRGIPTD   86 (803)
Q Consensus        15 i~~L~gle~vrkRP~mYiG-~t~~~~Gl~hlv~EiidNsvDe-~~~g~~~~I~V~i~~d---g---sisV~dnGrGIPv~   86 (803)
                      ++.++..|=-.+-|.+ +| ++ ..++|++.|.|+|+||+|. +-.++|..|.|+|+.+   +   +|+|.|||.|||.+
T Consensus         7 ~~~~~~~~f~~~~~~~-~~~~~-~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e   84 (530)
T 2zbk_B            7 FTSLSPAEFFKRNPEL-AGFPN-PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ   84 (530)
T ss_dssp             -------CGGGTCCGG-GTCSS-HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred             HHHCCHHHHHHHHHHH-HCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHH
T ss_conf             3435989997862787-45785-465699999999999998887258988359999983489957899999628989999


Q ss_pred             CCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECC-----CEEEEEEEECC
Q ss_conf             0777885001256425011323289860483116752037786326-----44999999789
Q gi|254780814|r   87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS-----SWLKLRIKREG  143 (803)
Q Consensus        87 ~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS-----~~~~v~v~rdg  143 (803)
                      -.        +.+|+..+++++.+...|   .|.+|+|.+.+..||     ....|++...+
T Consensus        85 ~l--------~~~f~~f~~s~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~  135 (530)
T 2zbk_B           85 EV--------PNAFGRVLYSSKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVN  135 (530)
T ss_dssp             GS--------HHHHTSCCCSCCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred             HH--------HHHHHHHCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             99--------998642034776453244---7865445899999999805975999994589


No 23 
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A*
Probab=97.39  E-value=0.00097  Score=46.47  Aligned_cols=143  Identities=17%  Similarity=0.209  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEEC-CC
Q ss_conf             656755578868-------60-------7797579998389-8399997684453640777885001256--42501-13
Q gi|254780814|r   45 IYEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTRLH-AG  106 (803)
Q Consensus        45 v~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~L~-ag  106 (803)
                      +=|+|.||+|-.       +.       ..--.|.|..+++ ..++|.|||-|+--+          |++  |++.- +|
T Consensus        37 LRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~----------el~~~lgtIa~Sg  106 (236)
T 2gqp_A           37 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTRE----------ELVKNLGTIAKSG  106 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHH----------HHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHHHCC
T ss_conf             999987899999999999664941004677716999765888889998455221599----------9988767666214


Q ss_pred             CC-CCCCCC-------EE--ECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEE
Q ss_conf             23-289860-------48--3116752037786326449999997895-9999988983646313873277888708999
Q gi|254780814|r  107 GK-FNQKSY-------KV--SGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTF  175 (803)
Q Consensus       107 ~k-fd~~~y-------k~--sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F  175 (803)
                      .+ |...-.       .-  --|+-|||.--+=..+.+.+|+.++.+. .|. -+++|.....+.........+||+|+.
T Consensus       107 t~~f~~~~~~~~~~~~~~~~lIGqFGVGFyS~FmVAd~V~V~sr~~~~~~~~-W~s~g~~~~~i~~~~~~~~~~GT~I~L  185 (236)
T 2gqp_A          107 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHI-WESDSNEFSVIADPRGNTLGRGTTITL  185 (236)
T ss_dssp             -----------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEE-EEESSSCEEEEECTTCSCSSSEEEEEE
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECEEEEEEECCCCCCCE-EEECCCCCEEEECCCCCCCCCCEEEEE
T ss_conf             2888876553200345311135325723057673305599998216787745-994588717973135777899849999


Q ss_pred             EECHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             8778885421000899999999731
Q gi|254780814|r  176 LPSSDIFSVQDFNYDTLQHRLRELS  200 (803)
Q Consensus       176 ~PD~~iF~~~~~~~d~l~~R~~~~A  200 (803)
                      .+-++-=  .-++...|...++..+
T Consensus       186 ~lk~~~~--e~l~~~~l~~li~kys  208 (236)
T 2gqp_A          186 VLKEEAS--DYLELDTIKNLVKKYS  208 (236)
T ss_dssp             EECGGGG--GGGCHHHHHHHHHHHH
T ss_pred             EECCCCH--HHCCHHHHHHHHHHHH
T ss_conf             9888774--5579999999999986


No 24 
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=97.31  E-value=0.0007  Score=47.57  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC-
Q ss_conf             56755578868-------60-------7797579998389-83999976844536407778850012564250-11323-
Q gi|254780814|r   46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK-  108 (803)
Q Consensus        46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k-  108 (803)
                      -|+|.||+|-.       +.       +.--.|.|..+.+ +.++|.|||-|+--+.-..       . +++. ++|.+ 
T Consensus        46 RELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~~-------~-LgtIa~Sgt~~  117 (236)
T 1uyl_A           46 RELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN-------N-LGTIAKSGTKA  117 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT-------G-GGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH-------H-HHHHHHCCCHH
T ss_conf             999867999999999997459400156777379999869887899996897757899998-------7-22343036199


Q ss_pred             C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEECHHHHH
Q ss_conf             2----89860483116752037786326449999997895-999998898364631387327788870899987788854
Q gi|254780814|r  109 F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS  183 (803)
Q Consensus       109 f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~  183 (803)
                      |    ++....---|..|||.--+=..+.+.+|..++.+. .|.-. ..|...............+||+|+-.+..+-  
T Consensus       118 f~~~~~~~~d~~~IGqFGVGFyS~FmVad~V~V~Tk~~~~~~~~w~-s~g~g~~~i~~~~~~~~~~GT~I~L~lk~d~--  194 (236)
T 1uyl_A          118 FMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWE-SSAGGSFTVRTDTGEPMGRGTKVILHLKEDQ--  194 (236)
T ss_dssp             HHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEE-ECSTTEEEEEECCSSCCSSEEEEEEEECGGG--
T ss_pred             HHHHHHHCCCCCHHHHCCCCEEEECCCCCEEEEEECCCCCCCCEEE-ECCCCCEEEEEECCCCCCCCCEEEEEECCCH--
T ss_conf             9987550156122211152135402346768999746987643078-1378873798504555676617999847776--


Q ss_pred             HHHC-CHHHHHHHHHHHH
Q ss_conf             2100-0899999999731
Q gi|254780814|r  184 VQDF-NYDTLQHRLRELS  200 (803)
Q Consensus       184 ~~~~-~~d~l~~R~~~~A  200 (803)
                       .+| +...|...++..+
T Consensus       195 -~efl~~~~i~~iikkys  211 (236)
T 1uyl_A          195 -TEYLEERRIKEIVKKHS  211 (236)
T ss_dssp             -GGGGSHHHHHHHHHHHC
T ss_pred             -HHHHCHHHHHHHHHHHH
T ss_conf             -88719899999999986


No 25 
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.29  E-value=0.0015  Score=44.94  Aligned_cols=151  Identities=17%  Similarity=0.225  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHH--H-----H-----CCC--CEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEE-CCCCC
Q ss_conf             56755578868--6-----0-----779--7579998389-839999768445364-07778850012564250-11323
Q gi|254780814|r   46 YEVLDNAIDES--L-----E-----GYA--DIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRL-HAGGK  108 (803)
Q Consensus        46 ~EiidNsvDe~--~-----~-----g~~--~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L-~ag~k  108 (803)
                      =|+|.||+|-.  +     .     +..  -.|.|+.+++ ++++|.|||-|+--+ +|..         +++. ++|.+
T Consensus        32 RELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~D~GiGMt~~e~~~~---------lgtIa~Sgt~  102 (677)
T 2cg9_A           32 RELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINN---------LGTIAKSGTK  102 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHGG---------GSSSSSCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHH---------HHHHHHHHHH
T ss_conf             9888629999999998853691211678860699997588898999951888899999998---------7777114259


Q ss_pred             -C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEE-CCCCCCCCEEEEEEECHHH
Q ss_conf             -2----89860483116752037786326449999997895-999998898364631387-3277888708999877888
Q gi|254780814|r  109 -F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDI  181 (803)
Q Consensus       109 -f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~-~~~~~~~GT~I~F~PD~~i  181 (803)
                       |    ...+..---|.-|||.--+=..+.+.+|.++..+. .|.- +.+|......... ......+||+|+..|..+-
T Consensus       103 ~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~GT~I~L~lk~~~  181 (677)
T 2cg9_A          103 AFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIW-ESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQ  181 (677)
T ss_dssp             HHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEE-EECSSSEEEEEECCSSCCCSSEEEEEEEECTTG
T ss_pred             HHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEECCCCCCCEE-EEECCCCEEEEEECCCCCCCCCEEEEEEECCCH
T ss_conf             9999854578601230476101467886163799970688887279-996389707984034556777248999937877


Q ss_pred             HHHHHCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf             5421000899999999731-14641699
Q gi|254780814|r  182 FSVQDFNYDTLQHRLRELS-FLNSSVQI  208 (803)
Q Consensus       182 F~~~~~~~d~l~~R~~~~A-~Ln~gl~i  208 (803)
                      =+  -++.+.|..-++..+ |+.--+.+
T Consensus       182 ~e--~~~~~~l~~ii~kys~fi~~PI~l  207 (677)
T 2cg9_A          182 LE--YLEEKRIKEVIKRHSEFVAYPIQL  207 (677)
T ss_dssp             GG--GGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred             HH--HHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             87--750889999999843577766698


No 26 
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.20  E-value=0.0022  Score=43.72  Aligned_cols=152  Identities=24%  Similarity=0.285  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHH-------H-------HCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEE-ECCC
Q ss_conf             656755578868-------6-------07797579998389-8399997684453640777885001256--425-0113
Q gi|254780814|r   45 IYEVLDNAIDES-------L-------EGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTR-LHAG  106 (803)
Q Consensus        45 v~EiidNsvDe~-------~-------~g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~-L~ag  106 (803)
                      +-|.|.||+|-.       +       ++.--.|.|+++++ ++++|.|||-|+--+          |++  +++ -++|
T Consensus        32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~----------el~~~lgtIa~Sg  101 (559)
T 1y4s_A           32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRD----------EVIDHLGTIAKSG  101 (559)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHH----------HHHHHHSCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHEEHH
T ss_conf             888887299999999998614931007898827999973889989999628889999----------9998511325351


Q ss_pred             CC-C------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE--EEEEEEE-CCEECCCCEEECCCCCCCCEEEEEE
Q ss_conf             23-2------89860483116752037786326449999997895--9999988-9836463138732778887089998
Q gi|254780814|r  107 GK-F------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN--IYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFL  176 (803)
Q Consensus       107 ~k-f------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk--~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~  176 (803)
                      ++ |      +...-.---|.-|||.--+=..+...+|.+++-|.  ...-.|+ .|.....+..  .....+||+|+..
T Consensus       102 t~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa~~V~V~tr~~~~~~~~~~~w~~~g~~~~~~~~--~~~~~~GT~I~L~  179 (559)
T 1y4s_A          102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD--ITKEDRGTEITLH  179 (559)
T ss_dssp             CCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEE--ECCCSCEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEECC--CCCCCCCEEEEEE
T ss_conf             89999984531255445455321001245544667999972278777743799977986258446--7777787478740


Q ss_pred             ECHHHHHHHHCCHHHHHHHHHHHH-CCCCEEEEEE
Q ss_conf             778885421000899999999731-1464169999
Q gi|254780814|r  177 PSSDIFSVQDFNYDTLQHRLRELS-FLNSSVQISL  210 (803)
Q Consensus       177 PD~~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i~l  210 (803)
                      +-.+-=+  -.+.+.|.+-++..+ |+.--+.+.-
T Consensus       180 lk~~~~e--fl~~~~l~~li~kys~fi~~PI~l~~  212 (559)
T 1y4s_A          180 LREGEDE--FLDDWRVRSIISKYSDHIALPVEIEK  212 (559)
T ss_dssp             ECTTCGG--GSCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             ECCCHHH--HHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             0554676--63178999999860404466637544


No 27 
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.17  E-value=0.0011  Score=46.20  Aligned_cols=143  Identities=18%  Similarity=0.205  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC-
Q ss_conf             56755578868-------60-------7797579998389-83999976844536407778850012564250-11323-
Q gi|254780814|r   46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK-  108 (803)
Q Consensus        46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k-  108 (803)
                      -|+|.||+|-.       +.       +..-.|.|..+.+ ++++|.|||-|+--+.-.        --|++. .+|.+ 
T Consensus        74 RELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~--------~~lgtIa~Sg~~~  145 (264)
T 1yc1_A           74 RELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI--------NNLGTIAKSGTKA  145 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------HHHHSCTTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH--------HHCCCHHCCCCHH
T ss_conf             88885799999999998653952246798736999876888889999689877799999--------7616500146388


Q ss_pred             C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEECHHHHH
Q ss_conf             2----89860483116752037786326449999997895-999998898364631387327788870899987788854
Q gi|254780814|r  109 F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS  183 (803)
Q Consensus       109 f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~  183 (803)
                      |    ......---|.-|||.-.+=..+.+.+|.++..+. .+.-.|..+. .............+||+|+..+..+-  
T Consensus       146 f~~~~~~~~d~~~IGqFGVGFyS~FMVAdkV~V~Trs~~~~~~~w~s~~~g-~~~~~~~~~~~~~~GT~I~L~Lk~d~--  222 (264)
T 1yc1_A          146 FMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG-SFTVRTDTGEPMGRGTKVILHLKEDQ--  222 (264)
T ss_dssp             HHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTT-EEEEEECCSSCCSSEEEEEEEECGGG--
T ss_pred             HHHHHHHCCCCCEECCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECC-CEEEEECCCCCCCCCCEEEEEECCCH--
T ss_conf             898754025644000015221220234775799975899864437864068-72799677788999948999968872--


Q ss_pred             HHHC-CHHHHHHHHHHHH
Q ss_conf             2100-0899999999731
Q gi|254780814|r  184 VQDF-NYDTLQHRLRELS  200 (803)
Q Consensus       184 ~~~~-~~d~l~~R~~~~A  200 (803)
                       .+| +.+.|...++..+
T Consensus       223 -~Efle~~rl~~lIkkYS  239 (264)
T 1yc1_A          223 -TEYLEERRIKEIVKKHS  239 (264)
T ss_dssp             -GGGGSHHHHHHHHHHHT
T ss_pred             -HHHCCHHHHHHHHHHHH
T ss_conf             -78669989999999876


No 28 
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A
Probab=97.09  E-value=0.0014  Score=45.32  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHH-------H-------HCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC
Q ss_conf             656755578868-------6-------07797579998389-83999976844536407778850012564250-11323
Q gi|254780814|r   45 IYEVLDNAIDES-------L-------EGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK  108 (803)
Q Consensus        45 v~EiidNsvDe~-------~-------~g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k  108 (803)
                      +-|+|.||+|-.       +       .+.--.|.|..+++ +.++|.|||-|+--+.-.        --|++. .+|.+
T Consensus        31 lRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~--------~~L~ti~~S~t~  102 (220)
T 2wer_A           31 LREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI--------NNLGTIAKSGTK  102 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH--------HHTTTSCCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCEEEEECCCCEECHHHHH--------HHHHHHHCCCCH
T ss_conf             878886799999999998645950112578845899853888779996187311389987--------654434033437


Q ss_pred             -C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEE-CCCCCCCCEEEEEEECHHH
Q ss_conf             -2----89860483116752037786326449999997895-999998898364631387-3277888708999877888
Q gi|254780814|r  109 -F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDI  181 (803)
Q Consensus       109 -f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~-~~~~~~~GT~I~F~PD~~i  181 (803)
                       |    ..+...---|.-|||.--+=..+.+.+|..++.+. .|.-++ +|........- ......+||+|+..+..+-
T Consensus       103 ~~~~~~~~~~~~~~IGqFGIGfyS~FmVad~V~V~Tr~~~~~~~~W~~-~~dg~~~i~~~~~~~~~~~GT~I~L~lk~d~  181 (220)
T 2wer_A          103 AFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWES-NAGGSFTVTLDEVNERIGRGTILRLFLKDDQ  181 (220)
T ss_dssp             HHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEE-CSSSEEEEEECSSSCCCSSEEEEEEEECTTC
T ss_pred             HHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEE-CCCCCEEEEEECCCCCCCCCEEEEEEECCCH
T ss_conf             777530136541303531004778886317699998359986305785-1799769998114776798779999968448


Q ss_pred             HHHHHCCHHHHHHHHHHHH
Q ss_conf             5421000899999999731
Q gi|254780814|r  182 FSVQDFNYDTLQHRLRELS  200 (803)
Q Consensus       182 F~~~~~~~d~l~~R~~~~A  200 (803)
                      -.  -++...|.+.++..+
T Consensus       182 ~e--~l~~~~l~~likkys  198 (220)
T 2wer_A          182 LE--YLEEKRIKEVIKRHS  198 (220)
T ss_dssp             GG--GGCHHHHHHHHHHHC
T ss_pred             HH--HCCHHHHHHHHHHHH
T ss_conf             87--659889999999987


No 29 
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.06  E-value=0.001  Score=46.21  Aligned_cols=157  Identities=18%  Similarity=0.250  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHH-------HH------CC-CCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC
Q ss_conf             656755578868-------60------77-97579998389-83999976844536407778850012564250-11323
Q gi|254780814|r   45 IYEVLDNAIDES-------LE------GY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK  108 (803)
Q Consensus        45 v~EiidNsvDe~-------~~------g~-~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k  108 (803)
                      +=|+|.||+|-.       +.      +. --.|.|..+++ +.++|.|||-|+--+.-        .--|++. .+|.+
T Consensus        33 lRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el--------~~~LgtIa~Sgt~  104 (269)
T 1qy5_A           33 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKSGTS  104 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHSCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHH--------HHHHHHHHCCCHH
T ss_conf             88898769999999999855495223688883588412688748999827633359999--------9887766310179


Q ss_pred             -C---------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEE
Q ss_conf             -2---------89860483116752037786326449999997895-999998898364631387327788870899987
Q gi|254780814|r  109 -F---------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP  177 (803)
Q Consensus       109 -f---------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~P  177 (803)
                       |         +...-.---|+-|||.-.+=..+.+..|..+..+. .|.- .++|.....+.........+||+|+..+
T Consensus       105 ~f~~~~~~~~~~~~~~~~~iGqFGvGfyS~FmVAd~V~V~sr~~~~~~~~W-~s~g~~~~~~~~~~~~~~~rGT~I~L~L  183 (269)
T 1qy5_A          105 EFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIW-ESDSNEFSVIADPRGNTLGRGTTITLVL  183 (269)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEE-EECSSCEEEEECTTCSCSSSEEEEEEEE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCEE-EECCCCCEEEECCCCCCCCCCEEEEEEE
T ss_conf             999863421234431022353257421788986248999971488877679-9579971786156677668864999998


Q ss_pred             CHHHHHHHHC-CHHHHHHHHHHHH-CCCCEEEEEEEECCC
Q ss_conf             7888542100-0899999999731-146416999996358
Q gi|254780814|r  178 SSDIFSVQDF-NYDTLQHRLRELS-FLNSSVQISLIDKRS  215 (803)
Q Consensus       178 D~~iF~~~~~-~~d~l~~R~~~~A-~Ln~gl~i~l~Der~  215 (803)
                      ..+-   ..| +...|...++..+ |+.  ..|.+.+++.
T Consensus       184 k~d~---~efl~~~~l~~ii~kys~fi~--~PI~l~~~k~  218 (269)
T 1qy5_A          184 KEEA---SDYLELDTIKNLVKKYSQFIN--FPIYVWSSKT  218 (269)
T ss_dssp             CGGG---GGGGSHHHHHHHHHTTCTTCS--SCEEEEEECC
T ss_pred             CCCH---HHHCCHHHHHHHHHHHHHCCC--CCEEEEEEEC
T ss_conf             7714---553699999999998851768--6879944513


No 30 
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.05  E-value=0.00063  Score=47.93  Aligned_cols=155  Identities=19%  Similarity=0.230  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEECCCCC-
Q ss_conf             56755578868-------60-------7797579998389-839999768445364-0777885001256425011323-
Q gi|254780814|r   46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRLHAGGK-  108 (803)
Q Consensus        46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L~ag~k-  108 (803)
                      =|+|.||+|-.       +.       +.--.|.|+++++ ++++|.|||-|+--+ ++.        -+=|.-++|++ 
T Consensus        51 RELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~DnGIGMt~~El~~--------~LgtIa~Sgt~~  122 (666)
T 2o1u_A           51 RELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKSGTSE  122 (666)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH
T ss_conf             989874999999999986358200278888469998659899899995388889999998--------723230132899


Q ss_pred             C---------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECC-EEEEEEEE-CCEECCCCEEECCCCCCCCEEEEEEE
Q ss_conf             2---------8986048311675203778632644999999789-59999988-98364631387327788870899987
Q gi|254780814|r  109 F---------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG-NIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLP  177 (803)
Q Consensus       109 f---------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdg-k~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~P  177 (803)
                      |         +...-.---|.-|||.=-+=..|.+.+|.++..+ ..|.  |. +|...............+||+|+-.|
T Consensus       123 fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~--W~s~g~~~~~~~~~~~~~~~~GT~I~L~l  200 (666)
T 2o1u_A          123 FLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHI--WESDSNEFSVIADPRGNTLGRGTTITLVL  200 (666)
T ss_dssp             -----------------------CTTGGGGGTEEEEEEEEECTTSCCEE--EEESSSCCEEEECTTCCSSSSEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCE--EEECCCCCEEECCCCCCCCCCCEEEEEEE
T ss_conf             9999874210123103334057745113427867999998548877505--89358983574566556668973899970


Q ss_pred             CHHHHHHHHCCHHHHHHHHHHHH-CCCCEEEEEEEECC
Q ss_conf             78885421000899999999731-14641699999635
Q gi|254780814|r  178 SSDIFSVQDFNYDTLQHRLRELS-FLNSSVQISLIDKR  214 (803)
Q Consensus       178 D~~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i~l~Der  214 (803)
                      ..+-=+  -++...|.+-++..+ |+.  ..|.+.+++
T Consensus       201 k~~~~e--~l~~~~i~~li~kYs~fi~--~PI~l~~~~  234 (666)
T 2o1u_A          201 KEEASD--YLELDTIKNLVKKYSQFIN--FPIYVWSSK  234 (666)
T ss_dssp             CTTTTT--SSSTTHHHHHHHHHSTTCC--SCEEEEECC
T ss_pred             CCCHHH--HCCHHHHHHHHHHHCCCCC--CCEEEECCC
T ss_conf             550143--4119999999997413677--776983044


No 31 
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.01  E-value=0.0013  Score=45.38  Aligned_cols=154  Identities=19%  Similarity=0.255  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHH-------HH-----CC--CCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEE-CCCC
Q ss_conf             56755578868-------60-----77--97579998389-8399997684453640777885001256--4250-1132
Q gi|254780814|r   46 YEVLDNAIDES-------LE-----GY--ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTRL-HAGG  107 (803)
Q Consensus        46 ~EiidNsvDe~-------~~-----g~--~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~L-~ag~  107 (803)
                      =|+|.||.|-.       +.     +.  .-.|.|..+++ +.++|.|||-|+--+          |++  |++. .+|.
T Consensus        52 RELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~~~~l~I~DnGIGMt~~----------el~~~LgtIa~Sgt  121 (281)
T 3peh_A           52 RELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKV----------DLINNLGTIAKSGT  121 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHH----------HHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHCCCCH
T ss_conf             77886799999999999736921117887626998873999989999798156789----------99977533134343


Q ss_pred             C-CC-----CCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEEC-CCCCCCCEEEEEEECH
Q ss_conf             3-28-----9860483116752037786326449999997895-9999988983646313873-2778887089998778
Q gi|254780814|r  108 K-FN-----QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSS  179 (803)
Q Consensus       108 k-fd-----~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~-~~~~~~GT~I~F~PD~  179 (803)
                      + |.     .+...---|.-|||.-.+=..|.+..|.+++.+. .|.-.+.. ...-.+.... .....+||+|+..+..
T Consensus       122 ~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAdkV~V~Tk~~~~~~~~w~s~~-~g~yti~~~~~~~~~~rGT~I~L~Lk~  200 (281)
T 3peh_A          122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTA-DAKFTIYKDPRGATLKRGTRISLHLKE  200 (281)
T ss_dssp             HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEET-TSCEEEEECTTCSTTSSEEEEEEEECG
T ss_pred             HHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEEC-CCCCEEEECCCCCCCCCCEEEEEEECC
T ss_conf             8888764412552334432031226776406779999547997620899978-998678643556556776389998566


Q ss_pred             HHHHHHH-CCHHHHHHHHHHHH-CCCCEEEEEEEECCC
Q ss_conf             8854210-00899999999731-146416999996358
Q gi|254780814|r  180 DIFSVQD-FNYDTLQHRLRELS-FLNSSVQISLIDKRS  215 (803)
Q Consensus       180 ~iF~~~~-~~~d~l~~R~~~~A-~Ln~gl~i~l~Der~  215 (803)
                      +-   .. ++...|...++..+ |+.  ..|.+.+++.
T Consensus       201 d~---~efl~~~~l~~likkys~fi~--~PI~l~~e~~  233 (281)
T 3peh_A          201 DA---TNLLNDKKLMDLISKYSQFIQ--FPIYLLHENV  233 (281)
T ss_dssp             GG---GGGGSHHHHHHHHHHHTTTCC--SCEEEEEEEE
T ss_pred             HH---HHHHCHHHHHHHHHHHCCCCC--CCEEEEEECC
T ss_conf             06---766199999999998414767--6769701125


No 32 
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.75  E-value=0.00087  Score=46.84  Aligned_cols=60  Identities=15%  Similarity=0.293  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE--EECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH
Q ss_conf             53289999999996307787489599943833788--7267179981457898999850011000014577654354689
Q gi|254780814|r  510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL  587 (803)
Q Consensus       510 G~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~--~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L  587 (803)
                      =+|+.-.|++++-.=|+--++...-.-..||. +|  ..++                    +...+...+.|..|..+.+
T Consensus       241 p~~L~~il~nLLkNA~ratve~~~~~~~~p~I-~V~i~~~~--------------------~~v~I~IsD~G~GI~~e~l  299 (407)
T 2q8g_A          241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPI-QVHVTLGN--------------------EDLTVKMSDRGGGVPLRKI  299 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCE-EEEEEECS--------------------SEEEEEEEECSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEEEEECC--------------------CEEEEEEEECCCCCCHHHH
T ss_conf             99999999999999999988337668998738-99998478--------------------4799999989989798999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780814|r  588 RNF  590 (803)
Q Consensus       588 ~~l  590 (803)
                      .++
T Consensus       300 ~~I  302 (407)
T 2q8g_A          300 DRL  302 (407)
T ss_dssp             GGG
T ss_pred             HHH
T ss_conf             877


No 33 
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.72  E-value=0.0026  Score=43.19  Aligned_cols=64  Identities=17%  Similarity=0.140  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCEEE-EECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH
Q ss_conf             853289999999996307787489599-9438337887267179981457898999850011000014577654354689
Q gi|254780814|r  509 DGAHIRTLLLTFFFRQMPSLIHNGFLY-IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL  587 (803)
Q Consensus       509 DG~HI~~Llltff~~~~~~li~~g~~y-ia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L  587 (803)
                      |=.|+.-.|++++--=+.-..+.+--. ...||. .|....                  +-+...+...+.|..|..+.+
T Consensus       235 dp~~L~~il~NLL~NAikat~e~~~~~~~~~p~I-~v~i~~------------------~~~~v~I~I~D~G~GIp~e~l  295 (388)
T 1gkz_A          235 IPMPLDYILPELLKNAMRATMESHLDTPYNVPDV-VITIAN------------------NDVDLIIRISDRGGGIAHKDL  295 (388)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCE-EEEEEE------------------CSSEEEEEEECCSCCCCTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEE------------------CCCEEEEEEEECCCCCCHHHH
T ss_conf             8899999999999999999771675557778847-999971------------------588699999869998799999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780814|r  588 RNFI  591 (803)
Q Consensus       588 ~~li  591 (803)
                      .++.
T Consensus       296 ~~IF  299 (388)
T 1gkz_A          296 DRVM  299 (388)
T ss_dssp             TTTT
T ss_pred             HHHC
T ss_conf             8762


No 34 
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.70  E-value=0.00028  Score=50.67  Aligned_cols=122  Identities=24%  Similarity=0.285  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHH-----HH--------C-CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC--
Q ss_conf             56755578868-----60--------7-797579998389-8399997684453640777885001256425011323--
Q gi|254780814|r   46 YEVLDNAIDES-----LE--------G-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK--  108 (803)
Q Consensus        46 ~EiidNsvDe~-----~~--------g-~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~k--  108 (803)
                      -|+|.||+|-.     ++        + .--.|.|+++++ .+++|.|||-|+.-+.-.+        -|++.-.+|.  
T Consensus        53 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tia~S~~~~  124 (235)
T 2ior_A           53 RELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSGTKS  124 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHTTCCCTTHHH
T ss_pred             EEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH
T ss_conf             108765999999999987159501058877436888648998899997773324788666--------650220232388


Q ss_pred             CC-----CC-CCEEECCCCCCEEEEEEECCCEEEEEEEECCE----EEEEEEECCEECCCCEEECCCCCCCCEEEEEEEC
Q ss_conf             28-----98-60483116752037786326449999997895----9999988983646313873277888708999877
Q gi|254780814|r  109 FN-----QK-SYKVSGGLHGVGVSVVNALSSWLKLRIKREGN----IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS  178 (803)
Q Consensus       109 fd-----~~-~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk----~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD  178 (803)
                      |-     +. .-.---|.-|||.-.+=..+.+.+|..++.+.    .|.-++ .|...  ......+...+||+|+..+-
T Consensus       125 f~~~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Trs~~~~~~~~~~w~~-~g~~~--~~i~~~~~~~~GT~I~L~Lk  201 (235)
T 2ior_A          125 FLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWES-AGEGE--YTVADITKEDRGTEITLHLR  201 (235)
T ss_dssp             HHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEE-CSSSE--EEEEEECCCSCEEEEEEEEC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEE-CCCCE--EEECCCCCCCCCCEEEEEEC
T ss_conf             9875331133441100234500255533067699984466867661135774-58860--55067888999888999989


No 35 
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=96.70  E-value=0.0023  Score=43.62  Aligned_cols=64  Identities=16%  Similarity=0.281  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEE-EEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH
Q ss_conf             8532899999999963077874895999438337-887267179981457898999850011000014577654354689
Q gi|254780814|r  509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY-GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL  587 (803)
Q Consensus       509 DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~-~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L  587 (803)
                      |-+|++-.|++++--=+.-.++.+..-...||.- .+..+.                    +...+...+.|..|..+.+
T Consensus       228 dp~~L~qIl~NLl~NAikat~e~~~~~~~~~~I~V~i~~~~--------------------~~v~I~V~D~G~GI~~e~l  287 (394)
T 2btz_A          228 VPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGE--------------------EDLSIKMSDRGGGVPLRKI  287 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHH
T ss_conf             79999999999999999987620356888870799998579--------------------7899999889999898999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780814|r  588 RNFID  592 (803)
Q Consensus       588 ~~li~  592 (803)
                      .++.+
T Consensus       288 ~~IF~  292 (394)
T 2btz_A          288 ERLFS  292 (394)
T ss_dssp             HHHTC
T ss_pred             HHHCC
T ss_conf             98738


No 36 
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7}
Probab=96.63  E-value=0.0093  Score=38.85  Aligned_cols=109  Identities=19%  Similarity=0.196  Sum_probs=61.7

Q ss_pred             EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC------CC-CCCEEECCCCCCEEEEEEECCCE
Q ss_conf             579998389-83999976844536407778850012564250113232------89-86048311675203778632644
Q gi|254780814|r   63 IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF------NQ-KSYKVSGGLHGVGVSVVNALSSW  134 (803)
Q Consensus        63 ~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kf------d~-~~yk~sgGlhGvG~s~vNalS~~  134 (803)
                      .|+|+.+++ +.++|.|||-|+--+.-..       -+-|.-++|.+-      +. .... --|.-|||.-.+=..+.+
T Consensus       120 ~I~I~~Dk~~~tltI~DnGIGMt~~el~~-------~LgTIa~Sgt~~F~~~l~~~~~~~~-lIGqFGVGFySaFmVAdk  191 (272)
T 3ied_A          120 IIKIKPDKEKKTLTITDNGIGMDKSELIN-------NLGTIAQSGTAKFLKQIEEGKADSN-LIGQFGVGFYSSFLVSNR  191 (272)
T ss_dssp             CEEEEEETTTTEEEEEECSCCCCHHHHHH-------HTTCSCCHHHHHHHHHHHTTSSCTT-CGGGSCCGGGGGGGTEEE
T ss_pred             EEEEEECCCCCEEEEEECCEEECHHHHHH-------HHCCCCCCCHHHHHHHHHCCCCCCC-HHCCCCCCEEEEEEECCE
T ss_conf             49988758789899994332342899987-------7355564653999986421444322-012357541788876068


Q ss_pred             EEEEEEECCEEEEEEEECCEECCCCEEEC------CCCCCCCEEEEEEECHH
Q ss_conf             99999978959999988983646313873------27788870899987788
Q gi|254780814|r  135 LKLRIKREGNIYEMSFINGILDNPLVVTG------SAGNDTGTEVTFLPSSD  180 (803)
Q Consensus       135 ~~v~v~rdgk~~~q~f~~g~~~~~l~~~~------~~~~~~GT~I~F~PD~~  180 (803)
                      .+|.++.+...|.-+. +|...-.+....      .....+||+|+..+..+
T Consensus       192 V~V~Tk~~~~~~~W~S-~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~Lked  242 (272)
T 3ied_A          192 VEVYTKKEDQIYRWSS-DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEE  242 (272)
T ss_dssp             EEEEEESSSCEEEEEE-CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGG
T ss_pred             EEEEECCCCCEEEEEE-CCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             9999757884168875-59985688644334555567799970899998977


No 37 
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.57  E-value=0.00092  Score=46.65  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCE-EEEECCCEEE-EEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHH
Q ss_conf             8532899999999963077874895-9994383378-8726717998145789899985001100001457765435468
Q gi|254780814|r  509 DGAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND  586 (803)
Q Consensus       509 DG~HI~~Llltff~~~~~~li~~g~-~yia~ppl~~-~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~  586 (803)
                      |-+|+.-.|.+++--=+.--++.+. .-...||.-- |..++                    ++..+...+.|..|..+.
T Consensus       250 dp~~L~qIL~NLL~NAikat~e~~~~~~~~~P~I~V~i~~~~--------------------~~v~I~IsD~G~GI~~e~  309 (419)
T 1y8o_A          250 VPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGK--------------------EDLSIKISDLGGGVPLRK  309 (419)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC--------------------CEEEEEEEECCCCCCHHH
T ss_conf             799999999999998999888652346788870799998569--------------------689999987999989899


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780814|r  587 LRNFID  592 (803)
Q Consensus       587 L~~li~  592 (803)
                      +.++.+
T Consensus       310 ~~~IF~  315 (419)
T 1y8o_A          310 IDRLFN  315 (419)
T ss_dssp             HGGGGC
T ss_pred             HHHHCC
T ss_conf             987707


No 38 
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.38  E-value=0.0037  Score=41.93  Aligned_cols=63  Identities=14%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE--EECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHH
Q ss_conf             853289999999996307787489599943833788--726717998145789899985001100001457765435468
Q gi|254780814|r  509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND  586 (803)
Q Consensus       509 DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~--~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~  586 (803)
                      |-+|++-.|++++--=+.-.++.+.-....||. +|  ..++                    ++..+...+.|..|..+.
T Consensus       227 dp~~L~~il~NLl~NAikat~e~~~~~~~~~~I-~v~v~~~~--------------------~~v~I~VsD~G~GI~~e~  285 (394)
T 2e0a_A          227 VPSHLHHMLFELFKNAMRATVEHQENQPSLTPI-EVIVVLGK--------------------EDLTIKISDRGGGVPLRI  285 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCE-EEEEEECS--------------------SEEEEEEEECSCCCCGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEEEECCC--------------------CEEEEEEEECCCCCCHHH
T ss_conf             899999999999999999998638778988728-99996279--------------------979999996699989899


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780814|r  587 LRNFID  592 (803)
Q Consensus       587 L~~li~  592 (803)
                      +.++.+
T Consensus       286 l~~IF~  291 (394)
T 2e0a_A          286 IDRLFS  291 (394)
T ss_dssp             HHHHTS
T ss_pred             HHHHCC
T ss_conf             987616


No 39 
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.25  E-value=0.0064  Score=40.11  Aligned_cols=95  Identities=18%  Similarity=0.318  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf             6325445656755578868607797579998389-8--399997684453640777885001256425011323289860
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY  114 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y  114 (803)
                      ..-|.+++.-+|+||+.-.    ...|.|.+..+ +  .|+|+|||.|||-+..        +-||.....+.   . + 
T Consensus        45 ~~~l~~vl~NLi~NAik~~----~~~I~i~~~~~~~~~~i~V~D~G~GI~~e~~--------~~iF~~F~r~~---~-~-  107 (161)
T 1bxd_A           45 PLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR--------KHLFQPFVRGD---S-A-  107 (161)
T ss_dssp             HHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGG--------GCSSCCCCCCS---C-C-
T ss_pred             HHHHHHHHHHHHHHHHHHC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHH--------HHHHCCCEECC---C-C-
T ss_conf             9999999999999999747----9859999999669899999986755599999--------88658835887---8-8-


Q ss_pred             EEECCCCCCEEEEEEECCC----EEEEEEEEC-CEEEEEEE
Q ss_conf             4831167520377863264----499999978-95999998
Q gi|254780814|r  115 KVSGGLHGVGVSVVNALSS----WLKLRIKRE-GNIYEMSF  150 (803)
Q Consensus       115 k~sgGlhGvG~s~vNalS~----~~~v~v~rd-gk~~~q~f  150 (803)
                      +.++| .|+|.+.|..+-+    .+.|+...+ |-.+...|
T Consensus       108 ~~~~G-~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~l  147 (161)
T 1bxd_A          108 RTISG-TGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL  147 (161)
T ss_dssp             CCCCC-CSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEE
T ss_pred             CCCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE
T ss_conf             86888-66079999999998799899997399918999999


No 40 
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=96.14  E-value=0.003  Score=42.68  Aligned_cols=151  Identities=22%  Similarity=0.248  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEECCCCC-
Q ss_conf             56755578868-------60-------7797579998389-839999768445364-0777885001256425011323-
Q gi|254780814|r   46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRLHAGGK-  108 (803)
Q Consensus        46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L~ag~k-  108 (803)
                      =|+|.||+|-.       +.       +.--.|.|+++++ ++++|.|||=|+--+ +|.        .+=|.-++|.+ 
T Consensus        33 RELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~i~DnGiGMt~~el~~--------~LgtIa~Sgt~~  104 (624)
T 2ioq_A           33 RELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSGTKS  104 (624)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH
T ss_conf             999872999999999987159131078888469999759889899995388889999998--------766760241799


Q ss_pred             CC-----CCCCEE-ECCCCCCEEEEEEECCCEEEEEEEECC--EEEEEEEE-CCEECCCCEEECCCCCCCCEEEEEEECH
Q ss_conf             28-----986048-311675203778632644999999789--59999988-9836463138732778887089998778
Q gi|254780814|r  109 FN-----QKSYKV-SGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSS  179 (803)
Q Consensus       109 fd-----~~~yk~-sgGlhGvG~s~vNalS~~~~v~v~rdg--k~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~PD~  179 (803)
                      |-     +..... --|.-|||.=-+=..+.+.+|.++.-|  ....-.|+ +|...-.+..  .+...+||+|+..|.+
T Consensus       105 f~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~srs~~~~~~~~~~w~~~g~~~~~i~~--~~~~~~GT~I~L~lk~  182 (624)
T 2ioq_A          105 FLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD--ITKEDRGTEITLHLRE  182 (624)
T ss_dssp             ----------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEE--ECCSSSEEEEEEEECT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECC--CCCCCCCCEEEEEECC
T ss_conf             99986641024434354232120001333787999972268877641799957987136446--7767875069973165


Q ss_pred             HHHHHHHCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf             885421000899999999731-14641699
Q gi|254780814|r  180 DIFSVQDFNYDTLQHRLRELS-FLNSSVQI  208 (803)
Q Consensus       180 ~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i  208 (803)
                      +-=  .-++.+.|.+.++..+ |+.--+.+
T Consensus       183 d~~--e~l~~~~i~~li~kYs~fi~~PI~l  210 (624)
T 2ioq_A          183 GED--EFLDDWRVRSIISKYSDHIALPVEI  210 (624)
T ss_dssp             TCG--GGGCHHHHHHHHHHHHTTCSSCEEE
T ss_pred             CHH--HHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             067--6642999999898526577877487


No 41 
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=96.01  E-value=0.0046  Score=41.25  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCE
Q ss_conf             25445656755578868607-797579998389-8--3999976844536407778850012564250113232898604
Q gi|254780814|r   40 GLHHMIYEVLDNAIDESLEG-YADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK  115 (803)
Q Consensus        40 Gl~hlv~EiidNsvDe~~~g-~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk  115 (803)
                      -+.-.|.|++.|||.-+..+ -...|.|++..+ +  .|+|+|||+|||-..          .+|--+     |.   .+
T Consensus        39 di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~~~~----------~~~~~~-----~~---~~  100 (145)
T 1th8_A           39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIE----------EARQPL-----FT---TK  100 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSCHH----------HHTCCC------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHH----------HCCCCC-----CC---CC
T ss_conf             9999999999999884348999908999999937899999996478958577----------537877-----54---46


Q ss_pred             EECCCCCCEEEEEEECCCEEEEEEEEC-CEEEEEE
Q ss_conf             831167520377863264499999978-9599999
Q gi|254780814|r  116 VSGGLHGVGVSVVNALSSWLKLRIKRE-GNIYEMS  149 (803)
Q Consensus       116 ~sgGlhGvG~s~vNalS~~~~v~v~rd-gk~~~q~  149 (803)
                      ...+..|.|..++..+...+.++...+ |....++
T Consensus       101 ~~~~~~GlGL~ii~~l~d~i~i~s~~~~Gt~v~l~  135 (145)
T 1th8_A          101 PELERSGMGFTIMENFMDEVIVESEVNKGTTVYLK  135 (145)
T ss_dssp             ---CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE
T ss_conf             79995736899999969999999839996999999


No 42 
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=95.72  E-value=0.018  Score=36.68  Aligned_cols=48  Identities=23%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCC
Q ss_conf             325445656755578868607797579998389-8--39999768445364077
Q gi|254780814|r   39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHK   89 (803)
Q Consensus        39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~   89 (803)
                      .-|.+++.|.+.|++--+   .++.|.|.+..+ +  .++|.|||.|+|-+...
T Consensus        39 ~~l~~ii~E~ltNa~kHa---~a~~v~v~l~~~~~~~~l~V~DnG~g~~~~~~~   89 (128)
T 3ehg_A           39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEENSF   89 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCCCCCC
T ss_conf             999999999999999847---996799999987999999999799454345578


No 43 
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=95.34  E-value=0.024  Score=35.65  Aligned_cols=74  Identities=22%  Similarity=0.395  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf             63254456567555788686077975799983898---399997684453640777885001256425011323289860
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG---SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY  114 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg---sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y  114 (803)
                      ..-+.+++.-+++||++-.-  ....|.|+...++   .|+|+|+|.|||-+..+        -||....++ |      
T Consensus        45 ~~~l~qvl~NLi~NAi~~~~--~~~~I~i~~~~~~~~v~i~V~D~G~Gi~~e~~~--------~iFe~F~t~-k------  107 (152)
T 3a0y_A           45 RTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFTT-K------  107 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTT--------GGGSTTCCC-C------
T ss_pred             HHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH--------HCCCCCEEC-C------
T ss_conf             99999999999999999814--997799999965988999997089998999998--------716995188-9------


Q ss_pred             EEECCCCCCEEEEEEEC
Q ss_conf             48311675203778632
Q gi|254780814|r  115 KVSGGLHGVGVSVVNAL  131 (803)
Q Consensus       115 k~sgGlhGvG~s~vNal  131 (803)
                        ++| .|+|.++|.-+
T Consensus       108 --~~G-tGLGL~i~k~i  121 (152)
T 3a0y_A          108 --TQG-TGLGLSICRKI  121 (152)
T ss_dssp             ----C-CCCSHHHHHHH
T ss_pred             --CCC-CCHHHHHHHHH
T ss_conf             --895-06799999999


No 44 
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=95.25  E-value=0.019  Score=36.41  Aligned_cols=86  Identities=21%  Similarity=0.462  Sum_probs=52.4

Q ss_pred             CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             87154327996325445656755578868607797579998389-8--39999768445364077788500125642501
Q gi|254780814|r   28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH  104 (803)
Q Consensus        28 P~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~  104 (803)
                      +.+..|  | ..-|++++.-+|+||+.-.   -...|.|....+ +  .|+|.|||.|||-+..        +-||....
T Consensus        37 ~~~v~~--d-~~~l~~vl~NLl~NAiky~---~~~~I~i~~~~~~~~v~i~V~D~G~GI~~~~~--------~~iF~~F~  102 (150)
T 1ysr_A           37 TCIIVG--L-PAGLRLAVDNAIANAVKHG---GATLVQLSAVSSRAGVEIAIDDNGSGVPEGER--------QVVFERFS  102 (150)
T ss_dssp             CCEEEE--C-HHHHHHHHHHHHHHHHHTT---CCSEEEEEEEEETTEEEEEEEESSSCCCGGGH--------HHHHTSCC
T ss_pred             CCEEEE--C-HHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHH--------HHHCCCCC
T ss_conf             968998--9-9999999999999999748---99789999998099999999984879798999--------98557634


Q ss_pred             CCCCCCCCCCEEECCCCCCEEEEEEECCCE
Q ss_conf             132328986048311675203778632644
Q gi|254780814|r  105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSW  134 (803)
Q Consensus       105 ag~kfd~~~yk~sgGlhGvG~s~vNalS~~  134 (803)
                      .+.   ..  + .+| +|+|.++|..+-+.
T Consensus       103 r~~---~~--~-~~G-~GLGL~i~k~i~~~  125 (150)
T 1ysr_A          103 RGS---TA--S-HSG-SGLGLALVAQQAQL  125 (150)
T ss_dssp             ------------------CCCHHHHHHHHH
T ss_pred             CCC---CC--C-CCC-CCHHHHHHHHHHHH
T ss_conf             179---99--9-896-07799999999998


No 45 
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=94.94  E-value=0.021  Score=36.17  Aligned_cols=76  Identities=21%  Similarity=0.389  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf             6325445656755578868607797579998389-8--399997684453640777885001256425011323289860
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY  114 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y  114 (803)
                      ..-|.+++.-+|+||++-.-.  ...|.|.+..+ +  .|+|.|||.|||-+..+        -||.-..++     +. 
T Consensus       121 ~~~l~qvl~NLl~NAik~~~~--~~~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~--------~iFepF~~t-----k~-  184 (244)
T 3d36_A          121 REKFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLE--------RLGEPYFTT-----KG-  184 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHHHH--------HTTSTTCCS-----SG-
T ss_pred             HHHHHHHHHHHHHHHHHHCCC--CCEEEEEEEEECCEEEEEEEECCCCCCHHHHH--------HHCCCCCCC-----CC-
T ss_conf             999999999999999986768--97689999960888999999868898989999--------866998658-----99-


Q ss_pred             EEECCCCCCEEEEEEECC
Q ss_conf             483116752037786326
Q gi|254780814|r  115 KVSGGLHGVGVSVVNALS  132 (803)
Q Consensus       115 k~sgGlhGvG~s~vNalS  132 (803)
                        ++| .|.|.++|.-+-
T Consensus       185 --~~G-tGLGL~i~k~iv  199 (244)
T 3d36_A          185 --VKG-TGLGMMVVYRII  199 (244)
T ss_dssp             --GGC-CSCHHHHHHHHH
T ss_pred             --CCC-CCHHHHHHHHHH
T ss_conf             --996-476899999999


No 46 
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=94.62  E-value=0.027  Score=35.23  Aligned_cols=79  Identities=29%  Similarity=0.425  Sum_probs=47.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEC
Q ss_conf             32544565675557886860779757999838983999976844536407778850012564250113232898604831
Q gi|254780814|r   39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG  118 (803)
Q Consensus        39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sg  118 (803)
                      .-|.+++.-+|+||+.-+  ..+..|.|++..+ .++|+|||.|||-+..        +-||-....+.   +   +.+.
T Consensus       116 ~~l~~vl~NLl~NAikys--~~~~~I~i~~~~~-~~~v~D~G~GI~~e~~--------~~iFe~F~r~~---~---~~~~  178 (222)
T 3jz3_A          116 LLLSLLVRNLLDNAVRYS--PQGSVVDVTLNAD-NFIVRDNGPGVTPEAL--------ARIGERFYRPP---G---QTAT  178 (222)
T ss_dssp             HHHHHHHHHHHHHHHHTC--CTTCEEEEEECSS-EEEEECSCC-------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEE-EEEECCCCCCCCHHHH--------HHHCCCCCCCC---C---CCCC
T ss_conf             999999999999999868--9996799999742-4998358999899999--------98617974189---9---9999


Q ss_pred             CCCCCEEEEEEECCCEE
Q ss_conf             16752037786326449
Q gi|254780814|r  119 GLHGVGVSVVNALSSWL  135 (803)
Q Consensus       119 GlhGvG~s~vNalS~~~  135 (803)
                      | .|+|.++|.-+-+..
T Consensus       179 G-~GLGL~Ivk~iv~~h  194 (222)
T 3jz3_A          179 G-SGLGLSIVQRIAKLH  194 (222)
T ss_dssp             ----CTHHHHHHHHHHT
T ss_pred             C-CCHHHHHHHHHHHHC
T ss_conf             5-267899999999983


No 47 
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=94.62  E-value=0.045  Score=33.51  Aligned_cols=78  Identities=26%  Similarity=0.428  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCC-EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf             63254456567555788686077975799983--898-399997684453640777885001256425011323289860
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLN--MDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY  114 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~--~dg-sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y  114 (803)
                      ..-|.+++.-+|+||+.-+-    ..|.|.+.  .+. .|+|.|||.|||-+..+        -||.....+   +..  
T Consensus        42 ~~~l~~vl~NLl~NAiky~~----~~i~I~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~iF~~F~r~---~~~--  104 (152)
T 1id0_A           42 QNDFVEVMGNVLDNACKYCL----EFVEISARQTDEHLYIVVEDDGPGIPLSKRE--------VIFDRGQRV---DTL--  104 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHCS----SEEEEEEEECSSCEEEEEEESSSCCCGGGTT--------GGGSCCCCT---TCC--
T ss_pred             HHHHHHHHHHHHHHHHHHCC----CCEEEEEEEECCEEEEEEEECCCCCCHHHHH--------HHCCCCCCC---CCC--
T ss_conf             99999999999999999779----9889999997999999999889998989999--------872897048---999--


Q ss_pred             EEECCCCCCEEEEEEECCCEE
Q ss_conf             483116752037786326449
Q gi|254780814|r  115 KVSGGLHGVGVSVVNALSSWL  135 (803)
Q Consensus       115 k~sgGlhGvG~s~vNalS~~~  135 (803)
                        ..| .|+|.++|..+-+..
T Consensus       105 --~~G-~GLGL~i~k~iv~~h  122 (152)
T 1id0_A          105 --RPG-QGVGLAVAREITEQY  122 (152)
T ss_dssp             --CTT-CCSCHHHHHHHHHHT
T ss_pred             --CCC-CCHHHHHHHHHHHHC
T ss_conf             --897-147999999999985


No 48 
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=94.41  E-value=0.05  Score=33.16  Aligned_cols=11  Identities=18%  Similarity=0.579  Sum_probs=5.4

Q ss_pred             CCHHHHHHHHH
Q ss_conf             32899999999
Q gi|254780814|r  511 AHIRTLLLTFF  521 (803)
Q Consensus       511 ~HI~~Llltff  521 (803)
                      ..++..|.|++
T Consensus       243 ~~l~qvl~NLl  253 (349)
T 3a0r_A          243 TRIKQVLINLV  253 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             89999999999


No 49 
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=94.36  E-value=0.042  Score=33.76  Aligned_cols=85  Identities=21%  Similarity=0.416  Sum_probs=52.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf             63254456567555788686077-97579998389-8--39999768445364077788500125642501132328986
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS  113 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~-~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~  113 (803)
                      ..-|++++.-+|+||+.-.-.|- ...|.|....+ +  .|+|.|+|.|||-+..        +-||.....+.+-  ..
T Consensus       136 ~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D~G~GI~~e~~--------~~iF~~F~r~~~~--~~  205 (258)
T 2c2a_A          136 PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK--------DRIFEQFYRVDSS--LT  205 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT--------TGGGSTTCCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC--CC
T ss_conf             9999999999999999855358982489999960599899999982898898999--------9874598828888--88


Q ss_pred             CEEECCCCCCEEEEEEECCCE
Q ss_conf             048311675203778632644
Q gi|254780814|r  114 YKVSGGLHGVGVSVVNALSSW  134 (803)
Q Consensus       114 yk~sgGlhGvG~s~vNalS~~  134 (803)
                      .+ .+| .|+|.++|.-+-+.
T Consensus       206 ~~-~~G-~GLGL~i~k~iv~~  224 (258)
T 2c2a_A          206 YE-VPG-TGLGLAITKEIVEL  224 (258)
T ss_dssp             -------CCCTHHHHHHHHHH
T ss_pred             CC-CCC-CCHHHHHHHHHHHH
T ss_conf             99-994-04899999999998


No 50 
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=93.71  E-value=0.033  Score=34.59  Aligned_cols=46  Identities=9%  Similarity=0.106  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---EEEEEECCCCCCCC
Q ss_conf             254456567555788686077975799983898---39999768445364
Q gi|254780814|r   40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDG---SCTVSDNGRGIPTD   86 (803)
Q Consensus        40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg---sisV~dnGrGIPv~   86 (803)
                      -+.+.+..+++||++..- .....|.|.+..++   .|+|.|||+|||-+
T Consensus       112 ~l~~il~nli~NAi~~~~-~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~  160 (192)
T 1ixm_A          112 KLMRKLFHLFDQAVSRES-ENHLTVSLQTDHPDRQLILYLDFHGAFADPS  160 (192)
T ss_dssp             HHHHHHHHHHHHHBCTTS-CCEEEEEEECCCSSSSCEEEEEEESCBSCGG
T ss_pred             HHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCEEEEEEEECCCCCCHH
T ss_conf             999999999999887427-8986699999967999999999768856889


No 51 
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=91.39  E-value=0.16  Score=29.29  Aligned_cols=45  Identities=24%  Similarity=0.161  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CEEEEEECCCCCCCCC
Q ss_conf             25445656755578868607797579998389---8399997684453640
Q gi|254780814|r   40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMD---GSCTVSDNGRGIPTDL   87 (803)
Q Consensus        40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d---gsisV~dnGrGIPv~~   87 (803)
                      .+..++.|.+.|++..+.   +..|.|.+..+   -.++|.|||.|+|.+.
T Consensus       130 ~l~~il~ell~Na~kh~~---~~~v~i~~~~~~~~~~i~v~Dng~g~~~~~  177 (218)
T 3ehh_A          130 ILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEEN  177 (218)
T ss_dssp             HHHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred             HHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCEEEEECCCCCCCCCCCC
T ss_conf             999999999971121145---505898741432034322147987667778


No 52 
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=89.63  E-value=0.35  Score=26.62  Aligned_cols=77  Identities=25%  Similarity=0.478  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCC-------EEEEEECCC---C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf             6325445656755578868607797-------579998389---8--399997684453640777885001256425011
Q gi|254780814|r   38 ESGLHHMIYEVLDNAIDESLEGYAD-------IITVTLNMD---G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA  105 (803)
Q Consensus        38 ~~Gl~hlv~EiidNsvDe~~~g~~~-------~I~V~i~~d---g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~a  105 (803)
                      ..-|.++++-++.||++-.-.+...       ...+.+..+   .  .|+|.|||.|||-+..+        -+|.-..+
T Consensus        46 ~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~pf~t  117 (160)
T 1r62_A           46 PDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQD--------TLFYPMVS  117 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCHHHHH--------HHCCCCEE
T ss_conf             9999999999999999850368961688641023034302356846899978788977989999--------72787220


Q ss_pred             CCCCCCCCCEEECCCCCCEEEEEEECC
Q ss_conf             323289860483116752037786326
Q gi|254780814|r  106 GGKFNQKSYKVSGGLHGVGVSVVNALS  132 (803)
Q Consensus       106 g~kfd~~~yk~sgGlhGvG~s~vNalS  132 (803)
                       .|        .+| .|.|.++|.-+-
T Consensus       118 -~k--------~~G-~GLGL~i~~~iv  134 (160)
T 1r62_A          118 -GR--------EGG-TGLGLSIARNLI  134 (160)
T ss_dssp             ----------------CHHHHHHHHHH
T ss_pred             -CC--------CCC-CCCCHHHHHHHH
T ss_conf             -48--------899-866199999999


No 53 
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=77.08  E-value=1  Score=23.09  Aligned_cols=47  Identities=28%  Similarity=0.507  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH--------CC--CCEEEEEECCC-C--EEEEEECCCCCCCC
Q ss_conf             2544565675557886860--------77--97579998389-8--39999768445364
Q gi|254780814|r   40 GLHHMIYEVLDNAIDESLE--------GY--ADIITVTLNMD-G--SCTVSDNGRGIPTD   86 (803)
Q Consensus        40 Gl~hlv~EiidNsvDe~~~--------g~--~~~I~V~i~~d-g--sisV~dnGrGIPv~   86 (803)
                      -|...+-.++.||+|-...        |-  ...|.+....+ +  .+++.|||+||+..
T Consensus       106 ~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~  165 (379)
T 1b3q_A          106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKE  165 (379)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf             999999999877776434786289886403555303799974987999994068776643


No 54 
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=72.98  E-value=3.9  Score=18.47  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC-EEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCC
Q ss_conf             7373899850888853289999999996307787489-599943833788726717998145789899985001
Q gi|254780814|r  496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG-FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL  568 (803)
Q Consensus       496 rY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g-~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl  568 (803)
                      ...+|+|+-|.|.-|-.       .-.|....|.+.| .++++.+|              +..+.++||.+.|.
T Consensus       286 ~~~~vvl~~D~D~AG~~-------A~~k~~~~l~~~g~~v~vv~lP--------------~gkDpdd~l~~~g~  338 (407)
T 2au3_A          286 FTKKVYILYDGDDAGRK-------AMKSAIPLLLSAGVEVYPVYLP--------------EGYDPDEFIKEFGK  338 (407)
T ss_dssp             TCSEEEEECCSSHHHHH-------HHHHHHHHHHHTTCEEEEECCC--------------TTCCHHHHHHHHCH
T ss_pred             CCCEEEEECCCCHHHHH-------HHHHHHHHHHHCCCEEEEEECC--------------CCCCHHHHHHHCCH
T ss_conf             16715884588699999-------9999999987517604899798--------------99895999987399


No 55 
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, structural genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A
Probab=65.23  E-value=5.5  Score=17.32  Aligned_cols=49  Identities=16%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             CEECCCC--CCCHHHHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCEEEEEECCCCCC
Q ss_conf             1543279--963254456567555788686077----975799983898399997684453
Q gi|254780814|r   30 MYIGDTD--GESGLHHMIYEVLDNAIDESLEGY----ADIITVTLNMDGSCTVSDNGRGIP   84 (803)
Q Consensus        30 mYiG~t~--~~~Gl~hlv~EiidNsvDe~~~g~----~~~I~V~i~~dgsisV~dnGrGIP   84 (803)
                      +|+||++  ..+|.     +++..||...++..    ...+.+.|..+ .|+|.|++++-.
T Consensus        19 ~YLGSv~V~~~~G~-----~vi~~Ai~~l~~~~~~~k~~~V~L~VS~~-GIkv~D~~~~~~   73 (157)
T 3hqc_A           19 LYLTSVETESLTGP-----QAVARASSAALSCSPRPTPAVVHFKVSAQ-GITLTDNQRKLF   73 (157)
T ss_dssp             EEEEEEECTTCCHH-----HHHHHHHHHHHHCC---CCEEEEEEEETT-EEEEEEEETTEE
T ss_pred             EEEEEEEECCCCCH-----HHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCCCE
T ss_conf             98737991799988-----99999999999728899994899999638-299997898857


No 56 
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=57.30  E-value=7.4  Score=16.32  Aligned_cols=50  Identities=20%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             CEECCCC--CCCHHHHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCEEEEEECCCCCCC
Q ss_conf             1543279--9632544565675557886860779----757999838983999976844536
Q gi|254780814|r   30 MYIGDTD--GESGLHHMIYEVLDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPT   85 (803)
Q Consensus        30 mYiG~t~--~~~Gl~hlv~EiidNsvDe~~~g~~----~~I~V~i~~dgsisV~dnGrGIPv   85 (803)
                      +|+||+.  ..+|.     +++..||+..++...    ..+.++|..+ .|+|.|+-++-.+
T Consensus         7 ~YLGs~~V~~~~G~-----~~i~~Av~~l~~~~~~~k~~~V~l~Vs~~-GIki~d~~~~~~~   62 (134)
T 1wvh_A            7 LFINSVEMESLTGP-----QAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKLFF   62 (134)
T ss_dssp             EEEEEEEEETCCHH-----HHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCSSC
T ss_pred             EEEEEEEECCCCCH-----HHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEECCCCCEE
T ss_conf             98625993798898-----99999999999618899984999999269-6899946888468


No 57 
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=48.39  E-value=5.5  Score=17.33  Aligned_cols=57  Identities=23%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCC
Q ss_conf             738998508888532899999999963077874895999438337887267179981457898999850011
Q gi|254780814|r  498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS  569 (803)
Q Consensus       498 ~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~  569 (803)
                      -.|||++|.|.-|--++.-|...|    |   +.-++||  ||.|+=      .=--.++.+...|...+++
T Consensus        51 ~~Iil~~D~D~aG~k~~~~l~~~L----~---~a~~~~i--~~~~~~------v~~~p~~~~~~~l~~~~~~  107 (119)
T 2fcj_A           51 YDVYLLADADEAGEKLRRQFRRMF----P---EAEHLYI--DRAYRE------VAAAPIWHLAQVLLRARFD  107 (119)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHC----T---TSEEECC--CTTTCS------TTTSCHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHC----C---CCCEEEE--CCCCCC------HHHCCHHHHHHHHHHCCCH
T ss_conf             869997389779999999999867----7---5638986--677634------3119989999999986860


No 58 
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=44.98  E-value=8.7  Score=15.79  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999987400357999877899988775
Q gi|254780814|r  363 GLSAWLEEHPLEAKIIVKKVLDASMVRD  390 (803)
Q Consensus       363 ~l~~~l~~n~~~ak~i~~k~~~a~~ar~  390 (803)
                      .+...+.+++..|..+.+++....+.|.
T Consensus       284 av~LLls~d~~~a~~la~~L~~lN~~Rk  311 (666)
T 2zxr_A          284 ALRLLLTDDAAEAQALVGELHRLNARRQ  311 (666)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             4455513788999999999988899999


No 59 
>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1
Probab=38.94  E-value=2.2  Score=20.43  Aligned_cols=49  Identities=24%  Similarity=0.554  Sum_probs=31.5

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCH
Q ss_conf             7373899850888853289999999996307787489599943833788726717998145789899985001100
Q gi|254780814|r  496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE  571 (803)
Q Consensus       496 rY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~  571 (803)
                      ++.+||||+|.|.-|.-.+.=+...       |...|..         +           +.+.+++|-+.+....
T Consensus        61 ~~~~Vil~~D~D~aG~~~~~k~~~~-------L~~~g~~---------v-----------~~d~~~~l~~~g~~~i  109 (118)
T 1t6t_1           61 KWEKVILLFDLDTHGERINQKMKEL-------LSSQGFL---------V-----------DENFRNFLKKWNIIHI  109 (118)
T ss_dssp             TCSEEEECCCSSHHHHHHHHHHHHH-------HHHTTCE---------E-----------ECHHHHHHHHTTCCCG
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHH-------HHHCCCC---------C-----------CCCHHHHHHHCCHHHH
T ss_conf             4893899867888899999999999-------9987791---------3-----------7599999988196999


No 60 
>3ggq_A Capsid protein; beta barrel, cytoplasm, RNA-binding, virion; 2.00A {Hepatitis e virus genotype 1}
Probab=36.76  E-value=10  Score=15.34  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=9.9

Q ss_pred             CCCCCCCCEEECCCCCCEEE
Q ss_conf             23289860483116752037
Q gi|254780814|r  107 GKFNQKSYKVSGGLHGVGVS  126 (803)
Q Consensus       107 ~kfd~~~yk~sgGlhGvG~s  126 (803)
                      .-|+...|.-|-|--+++..
T Consensus        25 AEy~Qs~~~~s~~p~y~s~t   44 (149)
T 3ggq_A           25 AEYDQSTYGSSTGPVYVSDS   44 (149)
T ss_dssp             CEEESSSSSBTTBCEEEESE
T ss_pred             HCCCCCCCCCCCCCCEEEEE
T ss_conf             10561001455677245015


No 61 
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=33.43  E-value=16  Score=13.66  Aligned_cols=20  Identities=15%  Similarity=0.041  Sum_probs=11.6

Q ss_pred             EEECCC---CEEEEEECCCCCCC
Q ss_conf             998389---83999976844536
Q gi|254780814|r   66 VTLNMD---GSCTVSDNGRGIPT   85 (803)
Q Consensus        66 V~i~~d---gsisV~dnGrGIPv   85 (803)
                      |.++.+   .+++|.|+|.-.|+
T Consensus         9 vI~~~~~~~~si~i~N~~~~~p~   31 (206)
T 1l4i_A            9 VIYPEGQKQVQLAVTNNDDKSSY   31 (206)
T ss_dssp             EEEETTCSEEEEEEEECCTTCEE
T ss_pred             EEEECCCCEEEEEEEECCCCCCE
T ss_conf             99938996789999939999638


No 62 
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1
Probab=32.60  E-value=7.7  Score=16.21  Aligned_cols=10  Identities=20%  Similarity=0.461  Sum_probs=4.6

Q ss_pred             EEEECCCCCC
Q ss_conf             9997684453
Q gi|254780814|r   75 TVSDNGRGIP   84 (803)
Q Consensus        75 sV~dnGrGIP   84 (803)
                      .|.++|+-|=
T Consensus       158 ~v~~~G~ei~  167 (350)
T 1ux6_A          158 VVRHQGKELV  167 (350)
T ss_dssp             EC-----CEE
T ss_pred             EEECCCCEEE
T ss_conf             7843885678


No 63 
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Probab=32.34  E-value=17  Score=13.52  Aligned_cols=61  Identities=16%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             HHCCCCCCEECCC--CCCCHHHHHHHHHHHHHHHHHHH----CCCCEEEEEECCCCEEEEEECCCCCCCCCCC
Q ss_conf             0004587154327--99632544565675557886860----7797579998389839999768445364077
Q gi|254780814|r   23 AVKKRPSMYIGDT--DGESGLHHMIYEVLDNAIDESLE----GYADIITVTLNMDGSCTVSDNGRGIPTDLHK   89 (803)
Q Consensus        23 ~vrkRP~mYiG~t--~~~~Gl~hlv~EiidNsvDe~~~----g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~   89 (803)
                      .+..=+..|+|++  ++..|.     +++..||+.-..    .....+.+.|..+ .|.|.|...+-++..||
T Consensus         6 ~~~~f~v~YLG~~~v~~~~G~-----~~v~~ai~~l~~~~~~~~~~~V~l~Vs~~-gv~v~d~~t~~~l~~~~   72 (140)
T 3dxe_A            6 LVQKFQVYYLGNVPVAKPVGV-----DVINGALESVLSSSSREQWTPSHVSVAPA-TLTILHQQTEAVLGECR   72 (140)
T ss_dssp             ----CEEEEEEEEEESCSCCH-----HHHHHHHHHHHHTCCGGGCEEEEEEECSS-EEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEEEEEEEECCCCCH-----HHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCCEEEEEEE
T ss_conf             635999999899993887886-----99999999998635678985599999389-89999679977999985


No 64 
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=31.70  E-value=13  Score=14.42  Aligned_cols=14  Identities=14%  Similarity=0.233  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             56888999999999
Q gi|254780814|r  291 GLRSALTRQITSYV  304 (803)
Q Consensus       291 gf~~al~~~i~~y~  304 (803)
                      -+.++.+|.+-++.
T Consensus       161 ~~~a~~aR~~~D~l  174 (592)
T 1mw9_X          161 RVNAQQARRFMDRV  174 (592)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             89999999997187


No 65 
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex, inhibit; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 1n0l_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=31.69  E-value=16  Score=13.65  Aligned_cols=14  Identities=14%  Similarity=0.401  Sum_probs=10.3

Q ss_pred             CEEEEEECCCCCCC
Q ss_conf             83999976844536
Q gi|254780814|r   72 GSCTVSDNGRGIPT   85 (803)
Q Consensus        72 gsisV~dnGrGIPv   85 (803)
                      .+++|.|+|.-.|+
T Consensus        18 ~s~~v~N~~~~~p~   31 (218)
T 2xg5_A           18 MTLDISNDNKQLPY   31 (218)
T ss_dssp             EEEEEEECCSSSCE
T ss_pred             EEEEEEECCCCCCE
T ss_conf             89999949998658


No 66 
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=31.05  E-value=17  Score=13.48  Aligned_cols=10  Identities=20%  Similarity=0.275  Sum_probs=6.1

Q ss_pred             CEEEEEECCC
Q ss_conf             8399997684
Q gi|254780814|r   72 GSCTVSDNGR   81 (803)
Q Consensus        72 gsisV~dnGr   81 (803)
                      -+++|.|+|.
T Consensus        30 ~sl~l~N~~~   39 (221)
T 2co7_B           30 ATLSVSNPQN   39 (221)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEECCC
T ss_conf             8999995999


No 67 
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=29.97  E-value=19  Score=13.24  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCCEEEEECCCCC
Q ss_conf             321235673738998508888
Q gi|254780814|r  489 SFDINKLRYHKIIIMTDADVD  509 (803)
Q Consensus       489 ~~~~~~lrY~kiiimtDaD~D  509 (803)
                      .+-+++||.|-++-..|+|.-
T Consensus       207 e~gld~LR~GD~VaI~d~D~~  227 (284)
T 3dcl_A          207 DLGVADLKLGDIVAIQDHDNS  227 (284)
T ss_dssp             GGTSSCCBTTBEEEEEEEECS
T ss_pred             HHCCCCCCCCCEEEEECCCCC
T ss_conf             928773021579999416776


No 68 
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=29.94  E-value=17  Score=13.46  Aligned_cols=13  Identities=15%  Similarity=0.158  Sum_probs=7.6

Q ss_pred             CEEEEEECCCCCC
Q ss_conf             8399997684453
Q gi|254780814|r   72 GSCTVSDNGRGIP   84 (803)
Q Consensus        72 gsisV~dnGrGIP   84 (803)
                      .+++|.|+|.--|
T Consensus        18 ~s~~v~N~~~~~p   30 (205)
T 1klf_A           18 VQLAVTNNDENST   30 (205)
T ss_dssp             EEEEEEECCSSCC
T ss_pred             EEEEEEECCCCCC
T ss_conf             8999992999963


No 69 
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=27.99  E-value=20  Score=13.00  Aligned_cols=20  Identities=20%  Similarity=0.147  Sum_probs=11.3

Q ss_pred             EEECCC---CEEEEEECCCCCCC
Q ss_conf             998389---83999976844536
Q gi|254780814|r   66 VTLNMD---GSCTVSDNGRGIPT   85 (803)
Q Consensus        66 V~i~~d---gsisV~dnGrGIPv   85 (803)
                      |.++.+   .+++|.|+|.-.|+
T Consensus         9 vIy~~~~~~~si~l~N~~~~~~~   31 (224)
T 3gfu_C            9 YIFRGDKDALTITVTNNDKERTF   31 (224)
T ss_dssp             EEEETTSSCEEEEEEECCSSCCE
T ss_pred             EEECCCCCEEEEEEECCCCCCEE
T ss_conf             99858996789999929998338


No 70 
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=27.18  E-value=17  Score=13.53  Aligned_cols=14  Identities=36%  Similarity=0.458  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             88899999999986
Q gi|254780814|r  293 RSALTRQITSYVEK  306 (803)
Q Consensus       293 ~~al~~~i~~y~~~  306 (803)
                      -.||..++++|.+.
T Consensus        38 T~ALIda~t~Y~Ka   51 (162)
T 1g73_A           38 TYALIEAITEYTKA   51 (162)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 71 
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=26.14  E-value=9.1  Score=15.64  Aligned_cols=14  Identities=14%  Similarity=0.541  Sum_probs=7.6

Q ss_pred             EEECCCCCCEEEEE
Q ss_conf             48311675203778
Q gi|254780814|r  115 KVSGGLHGVGVSVV  128 (803)
Q Consensus       115 k~sgGlhGvG~s~v  128 (803)
                      -.|+|=||.++...
T Consensus        70 ~aSsGN~g~a~A~~   83 (303)
T 1o58_A           70 EPTSGNMGIAIAMI   83 (303)
T ss_dssp             EECSSHHHHHHHHH
T ss_pred             EECCCCHHHHHHHH
T ss_conf             80899514799999


No 72 
>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3
Probab=25.85  E-value=21  Score=12.80  Aligned_cols=15  Identities=40%  Similarity=0.623  Sum_probs=13.8

Q ss_pred             CCCCCCCCHHHHHHC
Q ss_conf             377778895572230
Q gi|254780814|r  739 YKGLGEMNASQLWET  753 (803)
Q Consensus       739 YKGLGEMNPeQLWET  753 (803)
                      |+|-||.|=.-|||-
T Consensus       392 ~~GfG~gN~~aLf~a  406 (418)
T 1sp8_A          392 CGGFGKGNFSQLFKS  406 (418)
T ss_dssp             TTCSSGGGHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
T ss_conf             884661189999999


No 73 
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=25.34  E-value=20  Score=13.00  Aligned_cols=14  Identities=36%  Similarity=0.458  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             88899999999986
Q gi|254780814|r  293 RSALTRQITSYVEK  306 (803)
Q Consensus       293 ~~al~~~i~~y~~~  306 (803)
                      -.||..++++|.+.
T Consensus        38 T~ALIda~t~Y~Ka   51 (184)
T 1few_A           38 TYALIEAITEYTKA   51 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 74 
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8}
Probab=25.05  E-value=17  Score=13.52  Aligned_cols=13  Identities=15%  Similarity=0.657  Sum_probs=6.5

Q ss_pred             HCCCHHHHHHHHH
Q ss_conf             1110268999987
Q gi|254780814|r  357 ESFVNDGLSAWLE  369 (803)
Q Consensus       357 ~~~v~~~l~~~l~  369 (803)
                      .+.+.+.+..|..
T Consensus       189 ~da~~ea~~~~~~  201 (418)
T 1x1q_A          189 KDATNEAIRDWIT  201 (418)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8999999999985


No 75 
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.73  E-value=16  Score=13.66  Aligned_cols=66  Identities=29%  Similarity=0.390  Sum_probs=40.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-...+.|-.   ..| +++.|.-==.|||.---...++..+|-|+
T Consensus         1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL   70 (90)
T 2d99_A            1 GS-SGSSGLRKMVEEVFDVLYSEAL-GRASVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAIL   70 (90)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCSSCCSCCTTTSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7408899999999999999983-8998502787997569760898608999857897646789999999


No 76 
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=23.77  E-value=11  Score=14.99  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=13.4

Q ss_pred             ECCCCCCCHHHCCHH-HHHCCHHHHHHHHHHCCC
Q ss_conf             005620334430587-663236678888762578
Q gi|254780814|r  452 PLRGKILNVERARFD-KMLSSQEIGTLITALGTG  484 (803)
Q Consensus       452 PLrGKilNv~~a~~~-~i~~n~Ei~~l~~~lG~~  484 (803)
                      ||-=..||.|=--.. |-+ +-|+.-+++||--|
T Consensus       146 ~lSPRTLnAWVKvvEeK~f-spEvipmFsALSeg  178 (289)
T 1l6n_A          146 AISPRTLNAWVKVVEEKAF-SPEVIPMFSALSEG  178 (289)
T ss_dssp             CCCHHHHHHHHHHHHHHSS-STTTHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHCCC
T ss_conf             8997309999999972278-83788889997189


No 77 
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A*
Probab=23.54  E-value=20  Score=13.01  Aligned_cols=12  Identities=42%  Similarity=0.717  Sum_probs=4.6

Q ss_pred             HHCCCEEEECCC
Q ss_conf             306762860377
Q gi|254780814|r  730 GRKGISMQRYKG  741 (803)
Q Consensus       730 gkKG~sIQRYKG  741 (803)
                      |+..+..-|+||
T Consensus       618 ~~~~~~~k~~k~  629 (633)
T 2gai_A          618 GKGNLSEKRRKG  629 (633)
T ss_dssp             ------------
T ss_pred             CCCCCCCCCCCC
T ss_conf             877765135679


No 78 
>2dzq_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-066, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.01  E-value=19  Score=13.21  Aligned_cols=66  Identities=21%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-...+.|-.   ..+ +++.|.-==.|||.---...+++.+|-|+
T Consensus         1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL   70 (99)
T 2dzq_A            1 GS-SGSSGLRKQVELLFNTRYAKAI-GISEPVKVPYSKFLMHPEELFVVGLPEGISLRRPNCFGIAKLRKIL   70 (99)
T ss_dssp             CT-TSCCTHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCSCCTTTSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7408899999999999999983-8998402786996569760898628999857897645789999999


No 79 
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima}
Probab=22.84  E-value=24  Score=12.32  Aligned_cols=14  Identities=43%  Similarity=0.752  Sum_probs=5.3

Q ss_pred             CCCCCCCCCHHHHC
Q ss_conf             37633572100202
Q gi|254780814|r  335 PDPRFSSQTKEKLV  348 (803)
Q Consensus       335 ~nP~F~gQTK~kL~  348 (803)
                      |+|.|.++.=++|.
T Consensus         7 pd~~~~~~lv~k~i   20 (149)
T 3gty_S            7 PDPVFGDVLVAKLI   20 (149)
T ss_dssp             CCSSSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHH
T ss_conf             98665878999999


No 80 
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.76  E-value=18  Score=13.25  Aligned_cols=66  Identities=24%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-...+.|-.   ..+ +++.|.-==.|||.---.+.+++.+|-|+
T Consensus         1 gs-sgsSgLRk~Ve~lF~~ky~eAL-G~~~~V~VPY~~~~~~P~~v~V~GLP~gIpFR~P~~ygi~~Le~IL   70 (89)
T 2dn5_A            1 GS-SGSSGLREQVKELFNEKYGEAL-GLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYDIHRLEKIL   70 (89)
T ss_dssp             CC-CSCCCHHHHHHHHHHHHHHHHT-TCSSCCCCCHHHHHHCTTSEEEESCCTTCCCCCSSSCCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7407889999999999999982-8998502776997469760898628999857897645779999999


No 81 
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A 2ztn_A
Probab=22.72  E-value=23  Score=12.57  Aligned_cols=14  Identities=43%  Similarity=0.601  Sum_probs=9.9

Q ss_pred             EEEEECCCCCCCHHH
Q ss_conf             023300562033443
Q gi|254780814|r  448 QAILPLRGKILNVER  462 (803)
Q Consensus       448 qai~PLrGKilNv~~  462 (803)
                      ..+||||||+- +|.
T Consensus       426 ~~~lp~~gk~s-~w~  439 (504)
T 3hag_A          426 FFVLPLRGKLS-FWE  439 (504)
T ss_dssp             EECEEBSSCCE-EEE
T ss_pred             EEEEECCCCCC-HHH
T ss_conf             99843378642-411


No 82 
>2ed2_A General transcription factor II-I; unknown function, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67  E-value=19  Score=13.22  Aligned_cols=66  Identities=26%  Similarity=0.349  Sum_probs=36.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-..-+.|-.   ..+ +++.|.-==.|||.---...+++.+|-|+
T Consensus         1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL   70 (99)
T 2ed2_A            1 GS-SGSSGLRKMVDQLFCKKFAEAL-GSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLEKII   70 (99)
T ss_dssp             CC-SCCCSHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCCCCTTTSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7408899999999999999982-8998501686996569760898618999857897645789999999


No 83 
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=22.63  E-value=25  Score=12.29  Aligned_cols=10  Identities=30%  Similarity=0.371  Sum_probs=4.5

Q ss_pred             EECCCCCCCC
Q ss_conf             8508888532
Q gi|254780814|r  503 MTDADVDGAH  512 (803)
Q Consensus       503 mtDaD~DG~H  512 (803)
                      -+.||.=|||
T Consensus        84 tCeADtlGS~   93 (105)
T 2ea9_A           84 TCEADTLGSC   93 (105)
T ss_dssp             EEEEECTTCS
T ss_pred             EEECCCCCCC
T ss_conf             8874678775


No 84 
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.45  E-value=18  Score=13.32  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=35.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-...+.|-.   ..+ +++.|.-==.|||.---...+++.+|-|+
T Consensus         1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLP~gI~FR~P~~ygi~~Le~IL   70 (99)
T 2dn4_A            1 GS-SGSSGLRKQVEELFERKYAQAI-KAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERIL   70 (99)
T ss_dssp             CC-CCSSCHHHHHHHHHHHHHHHHT-TCCSCCCCCHHHHHHTTTTEEEESCCTTCCSSCTTTSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7408899999999999999983-8998402786996569760898628999857897645789999999


No 85 
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=21.63  E-value=26  Score=12.14  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=28.5

Q ss_pred             CCCCCCEEEEEEECCCEEEE----EEEECCEEEEE---EEECCEECCCCEE
Q ss_conf             11675203778632644999----99978959999---9889836463138
Q gi|254780814|r  118 GGLHGVGVSVVNALSSWLKL----RIKREGNIYEM---SFINGILDNPLVV  161 (803)
Q Consensus       118 gGlhGvG~s~vNalS~~~~v----~v~rdgk~~~q---~f~~g~~~~~l~~  161 (803)
                      |.+||-|.+||-+ |.-+.=    .|..+|+.|..   .+.||++.--+++
T Consensus        46 g~l~G~~~sLvvF-SsgYkPrr~D~Vv~~Gk~y~Vtr~~~~NGK~~i~lE~   95 (102)
T 2pp6_A           46 GPVEGNGKNVVVF-SGNVIPRRGDRVVLRGSEFTVTRIRRFNGKPQLTLEE   95 (102)
T ss_dssp             ------CEEEEEC-CSSCCCCTTCEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCEEEEEE-CCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEE
T ss_conf             7755770699996-6885468898789748689998898558968999973


No 86 
>2bez_F E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1
Probab=21.55  E-value=15  Score=13.89  Aligned_cols=13  Identities=46%  Similarity=0.808  Sum_probs=5.3

Q ss_pred             CCCCCCEEEEEEE
Q ss_conf             1167520377863
Q gi|254780814|r  118 GGLHGVGVSVVNA  130 (803)
Q Consensus       118 gGlhGvG~s~vNa  130 (803)
                      ||++|..|||||+
T Consensus         8 ~~~~~inasvv~i   20 (42)
T 2bez_F            8 GDISGINASVVNI   20 (42)
T ss_dssp             CCCTTCCCCCCCC
T ss_pred             CCCCCCCHHHHHH
T ss_conf             5425653678649


No 87 
>1u1i_A INO1, MIPS, MYO-inositol-1-phosphate synthase; NAD cofactor, metal IONS, isomerase; HET: NAD; 1.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.2.1.3 d.81.1.3
Probab=20.77  E-value=24  Score=12.35  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             EEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             22224621666772103568889999999998624200012357613430
Q gi|254780814|r  274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR  323 (803)
Q Consensus       274 ~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Dir  323 (803)
                      .+|||++|+.  ++-+-++        .+.++      +..+-+.|+|++
T Consensus       194 ~~fVN~~P~~--~a~~Pal--------~ela~------~~gvpi~GdD~K  227 (392)
T 1u1i_A          194 LPYANFTPSP--GSAIPAL--------KELAE------KKGVPHAGNDGK  227 (392)
T ss_dssp             CCEEECSSSC--TTCSHHH--------HHHHH------TTTCEEEESSBC
T ss_pred             CCEECCCCCC--CCCCHHH--------HHHHH------HCCCCEECCCCC
T ss_conf             9765356741--5788899--------99998------549977667766


No 88 
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell adhesion; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=20.69  E-value=18  Score=13.26  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=26.0

Q ss_pred             HHHHHCCCEEEEC---CCCCCCCHHHHHHCCCCHHHCEEE
Q ss_conf             9863067628603---777788955722303896134021
Q gi|254780814|r  727 FSIGRKGISMQRY---KGLGEMNASQLWETTLNPDTRSLL  763 (803)
Q Consensus       727 ~~~gkKG~sIQRY---KGLGEMNPeQLWETTMDP~tRtLL  763 (803)
                      +..|.+|++|...   -|-|||-...||-|.=-+..-+||
T Consensus       509 ~~~~~~g~~~~~v~~~~g~~~~~~~~~w~~~~~~~~~~~~  548 (634)
T 1yo8_A          509 RAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTL  548 (634)
T ss_dssp             CCEECSEEEEEEEECSSCTTHHHHHHHHSSSCBTTTEEEE
T ss_pred             CCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             0136663389987368786276543132027852010000


No 89 
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56  E-value=21  Score=12.88  Aligned_cols=66  Identities=26%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-...+.|-.   ..+ +++.|.-==.|||.---...+++.+|-|+
T Consensus         1 gs-sgsSgLrk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL   70 (99)
T 2dzr_A            1 GS-SGSSGLREQVQDLFNKKYGEAL-GIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERIL   70 (99)
T ss_dssp             CC-CCCCSHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCSSSEEEESCCTTCCSSCGGGSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7407899999999999999981-8998401786996569760898628999857897646889999999


No 90 
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=20.26  E-value=24  Score=12.37  Aligned_cols=66  Identities=24%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             327996325445656755578868607797579998---389-83999976844536407778850012564
Q gi|254780814|r   33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM  100 (803)
Q Consensus        33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~  100 (803)
                      || ++..||+..|.|+..-..-||+ |-..-+.|-.   ..+ +++.|.-==.|||.---...+++.+|-|+
T Consensus         1 gs-sgsSgLR~~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~LekIL   70 (99)
T 1q60_A            1 GS-SGSSGLKQKVENLFNEKCGEAL-GLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLEKIL   70 (99)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCSCCTTTSCHHHHHHHH
T ss_pred             CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98-7408899999999999999983-8998503786997569761898618999857897646789999999


Done!