Query gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 803 No_of_seqs 234 out of 2361 Neff 6.6 Searched_HMMs 23785 Date Mon May 30 13:03:19 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780814.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3nuh_B DNA gyrase subunit B; t 100.0 0 0 1088.7 33.7 411 392-803 1-420 (420) 2 1ei1_A DNA gyrase B, GYRB; ATP 100.0 0 0 956.1 28.2 390 7-399 1-391 (391) 3 1kij_A DNA gyrase subunit B; t 100.0 0 0 922.9 27.5 388 9-399 2-390 (390) 4 1s16_A Topoisomerase IV subuni 100.0 0 0 905.8 28.0 385 9-402 4-390 (390) 5 1zxm_A TOPO IIA ATPase, DNA to 100.0 0 0 809.7 18.5 361 16-394 7-395 (400) 6 3cwv_A DNA gyrase, B subunit, 100.0 0 0 802.6 22.2 348 17-386 6-362 (369) 7 1pvg_A DNA topoisomerase II; G 100.0 0 0 809.3 15.5 372 6-390 8-413 (418) 8 3k9f_C DNA topoisomerase 4 sub 100.0 0 0 685.4 16.2 238 397-799 20-261 (268) 9 2xkj_E Topoisomerase IV; type 100.0 0 0 680.8 15.8 256 380-802 2-258 (767) 10 3m4i_A DNA gyrase subunit B; G 100.0 0 0 664.1 16.2 234 413-803 8-242 (242) 11 2q2e_B Type 2 DNA topoisomeras 100.0 0 0 713.7 -41.3 579 7-789 5-611 (621) 12 3l4j_A DNA topoisomerase 2; to 100.0 0 0 574.3 14.8 226 407-798 3-240 (757) 13 2xcs_B DNA gyrase subunit B, D 100.0 0 0 563.2 10.4 198 405-799 1-198 (692) 14 3fv5_A DNA topoisomerase 4 sub 100.0 0 0 542.3 13.0 200 20-225 1-201 (201) 15 3g7e_A DNA gyrase subunit B; i 100.0 0 0 521.3 13.5 202 20-224 1-203 (203) 16 3g75_A DNA gyrase subunit B; a 100.0 0 0 479.1 11.9 182 20-226 1-184 (184) 17 1mu5_A Type II DNA topoisomera 99.5 5.9E-13 2.5E-17 118.0 16.4 182 16-213 9-209 (471) 18 3h4l_A DNA mismatch repair pro 99.5 4.8E-12 2E-16 111.0 19.6 160 38-214 23-196 (367) 19 1h7s_A PMS1 protein homolog 2; 99.4 1.1E-11 4.7E-16 108.1 12.2 192 1-215 1-207 (365) 20 3na3_A DNA mismatch repair pro 99.4 1.7E-10 7E-15 99.0 17.8 259 39-340 27-305 (348) 21 1b63_A MUTL; DNA mismatch repa 98.9 2.6E-08 1.1E-12 82.0 13.2 260 38-340 22-302 (333) 22 2zbk_B Type 2 DNA topoisomeras 98.8 6.9E-09 2.9E-13 86.5 6.5 116 15-143 7-135 (530) 23 2gqp_A Endoplasmin; GRP94, HSP 97.4 0.00097 4.1E-08 46.5 8.7 143 45-200 37-208 (236) 24 1uyl_A HSP 86, heat shock prot 97.3 0.0007 2.9E-08 47.6 7.2 143 46-200 46-211 (236) 25 2cg9_A ATP-dependent molecular 97.3 0.0015 6.4E-08 44.9 8.7 151 46-208 32-207 (677) 26 1y4s_A Chaperone protein HTPG; 97.2 0.0022 9.2E-08 43.7 8.8 152 45-210 32-212 (559) 27 1yc1_A HSP 86, heat shock prot 97.2 0.0011 4.4E-08 46.2 6.9 143 46-200 74-239 (264) 28 2wer_A ATP-dependent molecular 97.1 0.0014 5.7E-08 45.3 6.8 145 45-200 31-198 (220) 29 1qy5_A Endoplasmin; GRP94, NEC 97.1 0.001 4.4E-08 46.2 6.0 157 45-215 33-218 (269) 30 2o1u_A Endoplasmin; GRP94, HSP 97.1 0.00063 2.7E-08 47.9 4.8 155 46-214 51-234 (666) 31 3peh_A Endoplasmin homolog; st 97.0 0.0013 5.6E-08 45.4 6.2 154 46-215 52-233 (281) 32 2q8g_A [pyruvate dehydrogenase 96.8 0.00087 3.7E-08 46.8 3.5 60 510-590 241-302 (407) 33 1gkz_A [3-methyl-2-oxobutanoat 96.7 0.0026 1.1E-07 43.2 5.7 64 509-591 235-299 (388) 34 2ior_A Chaperone protein HTPG; 96.7 0.00028 1.2E-08 50.7 0.7 122 46-178 53-201 (235) 35 2btz_A Pyruvate dehydrogenase 96.7 0.0023 9.5E-08 43.6 5.3 64 509-592 228-292 (394) 36 3ied_A Heat shock protein; HSP 96.6 0.0093 3.9E-07 38.8 8.1 109 63-180 120-242 (272) 37 1y8o_A [pyruvate dehydrogenase 96.6 0.00092 3.9E-08 46.6 2.6 64 509-592 250-315 (419) 38 2e0a_A Pyruvate dehydrogenase 96.4 0.0037 1.6E-07 41.9 4.8 63 509-592 227-291 (394) 39 1bxd_A ENVZ(290-450), protein 96.2 0.0064 2.7E-07 40.1 5.3 95 38-150 45-147 (161) 40 2ioq_A Chaperone protein HTPG; 96.1 0.003 1.3E-07 42.7 3.2 151 46-208 33-210 (624) 41 1th8_A Anti-sigma F factor; SP 96.0 0.0046 1.9E-07 41.3 3.6 92 40-149 39-135 (145) 42 3ehg_A Sensor kinase (YOCF pro 95.7 0.018 7.4E-07 36.7 5.6 48 39-89 39-89 (128) 43 3a0y_A Sensor protein; ATP-LID 95.3 0.024 1E-06 35.6 5.2 74 38-131 45-121 (152) 44 1ysr_A Sensor-type histidine k 95.3 0.019 8.1E-07 36.4 4.5 86 28-134 37-125 (150) 45 3d36_A Sporulation kinase B; G 94.9 0.021 8.7E-07 36.2 3.9 76 38-132 121-199 (244) 46 3jz3_A Sensor protein QSEC; he 94.6 0.027 1.1E-06 35.2 3.9 79 39-135 116-194 (222) 47 1id0_A PHOQ histidine kinase; 94.6 0.045 1.9E-06 33.5 5.0 78 38-135 42-122 (152) 48 3a0r_A Sensor protein; four he 94.4 0.05 2.1E-06 33.2 4.8 11 511-521 243-253 (349) 49 2c2a_A Sensor histidine kinase 94.4 0.042 1.8E-06 33.8 4.3 85 38-134 136-224 (258) 50 1ixm_A SPO0B, protein (sporula 93.7 0.033 1.4E-06 34.6 2.8 46 40-86 112-160 (192) 51 3ehh_A Sensor kinase (YOCF pro 91.4 0.16 6.7E-06 29.3 3.7 45 40-87 130-177 (218) 52 1r62_A Nitrogen regulation pro 89.6 0.35 1.5E-05 26.6 4.2 77 38-132 46-134 (160) 53 1b3q_A Protein (chemotaxis pro 77.1 1 4.2E-05 23.1 2.0 47 40-86 106-165 (379) 54 2au3_A DNA primase; zinc ribbo 73.0 3.9 0.00017 18.5 6.3 52 496-568 286-338 (407) 55 3hqc_A Tensin-like C1 domain-c 65.2 5.5 0.00023 17.3 4.1 49 30-84 19-73 (157) 56 1wvh_A Tensin, tensin1; beta s 57.3 7.4 0.00031 16.3 4.5 50 30-85 7-62 (134) 57 2fcj_A Small toprim domain pro 48.4 5.5 0.00023 17.3 1.3 57 498-569 51-107 (119) 58 2zxr_A Single-stranded DNA spe 45.0 8.7 0.00037 15.8 1.9 28 363-390 284-311 (666) 59 1t6t_1 Putative protein; struc 38.9 2.2 9.2E-05 20.4 -1.9 49 496-571 61-109 (118) 60 3ggq_A Capsid protein; beta ba 36.8 10 0.00042 15.3 1.2 20 107-126 25-44 (149) 61 1l4i_A SFAE protein; periplasm 33.4 16 0.00069 13.7 1.8 20 66-85 9-31 (206) 62 1ux6_A Thrombospondin-1; extra 32.6 7.7 0.00032 16.2 0.0 10 75-84 158-167 (350) 63 3dxe_A Amyloid beta A4 protein 32.3 17 0.00072 13.5 3.5 61 23-89 6-72 (140) 64 1mw9_X DNA topoisomerase I; de 31.7 13 0.00055 14.4 1.1 14 291-304 161-174 (592) 65 2xg5_A PAPD, chaperone protein 31.7 16 0.00069 13.7 1.6 14 72-85 18-31 (218) 66 2co7_B SAFB chaperone, putativ 31.1 17 0.00072 13.5 1.6 10 72-81 30-39 (221) 67 3dcl_A TM1086; SAD, structural 30.0 19 0.00078 13.2 2.3 21 489-509 207-227 (284) 68 1klf_A FIMC chaperone, chapero 29.9 17 0.00073 13.5 1.5 13 72-84 18-30 (205) 69 3gfu_C Chaperone protein FAEE; 28.0 20 0.00084 13.0 1.6 20 66-85 9-31 (224) 70 1g73_A SMAC/diablo, second mit 27.2 17 0.00071 13.5 1.0 14 293-306 38-51 (162) 71 1o58_A O-acetylserine sulfhydr 26.1 9.1 0.00038 15.6 -0.5 14 115-128 70-83 (303) 72 1sp8_A 4-hydroxyphenylpyruvate 25.9 21 0.00089 12.8 1.3 15 739-753 392-406 (418) 73 1few_A Second mitochondria-der 25.3 20 0.00084 13.0 1.1 14 293-306 38-51 (184) 74 1x1q_A Tryptophan synthase bet 25.0 17 0.00072 13.5 0.7 13 357-369 189-201 (418) 75 2d99_A Muscle, general transcr 24.7 16 0.00069 13.7 0.6 66 33-100 1-70 (90) 76 1l6n_A GAG polyprotein; matrix 23.8 11 0.00046 15.0 -0.5 32 452-484 146-178 (289) 77 2gai_A DNA topoisomerase I; zi 23.5 20 0.00083 13.0 0.8 12 730-741 618-629 (633) 78 2dzq_A General transcription f 23.0 19 0.00079 13.2 0.6 66 33-100 1-70 (99) 79 3gty_S TF, 30S ribosomal prote 22.8 24 0.001 12.3 3.3 14 335-348 7-20 (149) 80 2dn5_A General transcription f 22.8 18 0.00078 13.3 0.5 66 33-100 1-70 (89) 81 3hag_A Capsid protein; jelly-r 22.7 23 0.00095 12.6 1.0 14 448-462 426-439 (504) 82 2ed2_A General transcription f 22.7 19 0.00078 13.2 0.5 66 33-100 1-70 (99) 83 2ea9_A JW2626, hypothetical pr 22.6 25 0.001 12.3 1.5 10 503-512 84-93 (105) 84 2dn4_A General transcription f 22.4 18 0.00076 13.3 0.4 66 33-100 1-70 (99) 85 2pp6_A Gifsy-2 prophage ATP-bi 21.6 26 0.0011 12.1 4.0 43 118-161 46-95 (102) 86 2bez_F E2 glycoprotein; coiled 21.5 15 0.00064 13.9 -0.1 13 118-130 8-20 (42) 87 1u1i_A INO1, MIPS, MYO-inosito 20.8 24 0.001 12.4 0.8 34 274-323 194-227 (392) 88 1yo8_A Thrombospondin-2; EGF, 20.7 18 0.00077 13.3 0.2 37 727-763 509-548 (634) 89 2dzr_A General transcription f 20.6 21 0.00087 12.9 0.4 66 33-100 1-70 (99) 90 1q60_A General transcription f 20.3 24 0.001 12.4 0.7 66 33-100 1-70 (99) No 1 >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Probab=100.00 E-value=0 Score=1088.68 Aligned_cols=411 Identities=46% Similarity=0.739 Sum_probs=389.7 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCC Q ss_conf 45532110011001246766766665555555217999825575432233465443023300562033443058766323 Q gi|254780814|r 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 (803) Q Consensus 392 a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n 471 (803) |+||||+||||++|++++|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+|+.++|++| T Consensus 1 ~~~ar~l~rrk~~l~~~~lpgkl~d~~~~~~~~~~l~~~egdsa~~~~~~~r~~~~~~~~pl~gk~ln~~~~~~~~~~~n 80 (420) T 3nuh_B 1 SNAAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSS 80 (420) T ss_dssp -----------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCC T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHCC T ss_conf 93578878410234568998620201148976557999757566777764348666688653886432402788788568 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEE Q ss_conf 66788887625787753321235673738998508888532899999999963077874895999438337887267179 Q gi|254780814|r 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 (803) Q Consensus 472 ~Ei~~l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~ 551 (803) +||.+|++|||||+|.++||+++||||||||||||||||+||||||||||||+||+||++|||||||||||+|++||+++ T Consensus 81 ~ei~~l~~~lg~~~~~~~~~~~~lry~~i~i~tdad~dg~hi~~ll~~~~~~~~~~l~~~g~~~~~~~p~~~~~~~k~~~ 160 (420) T 3nuh_B 81 QEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQ 160 (420) T ss_dssp HHHHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHCCCEEEEECCHHHEECCCCEE T ss_conf 99999999976688977677000554527997357877520588999999986767650780699847246323487107 Q ss_pred EEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHH Q ss_conf 98145789899985001100001457765435468999999999999999864344579999988742113511--2357 Q gi|254780814|r 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQE 629 (803) Q Consensus 552 YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~--~d~~ 629 (803) |++||.||++||++.|+++..+....++..++|++|.+++..+.++++++.+++++++..++++++..+.+... .++. T Consensus 161 y~~~~~~~~~~li~~g~e~~~L~~~~~g~~isg~eL~~ll~~~~~~~~ll~~l~rr~~~~~l~~l~~~~~l~~~~l~~~~ 240 (420) T 3nuh_B 161 YIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ 240 (420) T ss_dssp EECCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHH T ss_pred EEEEHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHH T ss_conf 88503678899997413574663155553246477888899999999999987542667789999853333244321179 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECC------CCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCC Q ss_conf 789999999988765310000110024------45670599999518530266466774164278999988887751145 Q gi|254780814|r 630 INVSLASKLANRLNFIAEKSEKSWHGS------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 (803) Q Consensus 630 ~~~~~~~~l~~~l~~~~~~~~~~~~~~------~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~ 703 (803) ....|.+.+...++...... ..|... .....+.+.+..+|+.....++..|+.+.+++.+..+...+...+.. T Consensus 241 ~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~d~e~~~~~~~i~~~~~Gv~~~~~I~~~f~~s~e~~~l~~~~~~~~~~~~~ 319 (420) T 3nuh_B 241 TVTRWVNALVSELNDKEQHG-SQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEE 319 (420) T ss_dssp HHHHHHHHHHHHHHHHCCSS-CEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTT T ss_pred HHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCEEEEEEEECCCCEEEECCHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999986553037-60589985346555221589998447322563398884476789999999987554124 Q ss_pred CEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCC Q ss_conf 50276558258739989999999986306762860377778895572230389613402123679889888786564189 Q gi|254780814|r 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 (803) Q Consensus 704 ~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD 783 (803) ++.+..+++.+++.+|.+++++|++.||||++||||||||||||||||||||||++|+||||+|+||++||+||++|||| T Consensus 320 ~~~~~~~~~~~~i~s~~ell~~v~~~gkKGlsIQRYKGLGEMNPeQLWETTMDP~~RtLLqV~IeDa~~AD~iFs~LMGD 399 (420) T 3nuh_B 320 DAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGD 399 (420) T ss_dssp SEEEEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSC T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCC T ss_conf 53012576452137689999999996078981234564777798898641528102617998513488999899872699 Q ss_pred CCCCHHHHHHHHHHHC-CCCC Q ss_conf 9876289988524412-3669 Q gi|254780814|r 784 EVEPRREFIQENSLPS-ALDI 803 (803) Q Consensus 784 ~VEPRReFIe~NAL~v-NLDI 803 (803) +|||||+|||+|||+| |||| T Consensus 400 ~VEPRR~FIe~NAl~V~NLDI 420 (420) T 3nuh_B 400 AVEPRRAFIEENALKAANIDI 420 (420) T ss_dssp C-------------------- T ss_pred CCHHHHHHHHHHHHHHHHCCC T ss_conf 957889999998403232599 No 2 >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=956.13 Aligned_cols=390 Identities=57% Similarity=0.931 Sum_probs=377.4 Q ss_pred CCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCC Q ss_conf 23678655123135420004587154327996325445656755578868607797579998389839999768445364 Q gi|254780814|r 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 (803) Q Consensus 7 ~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~ 86 (803) +++|||++|++|+||||||||||||||||+..+|||||+|||||||+||+++|||+.|+|+|+.||+|||+||||||||+ T Consensus 1 ~~~~d~~~i~~L~~lE~Vr~RP~mYiGs~~~~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dgsisV~ddGrGIPv~ 80 (391) T 1ei1_A 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG 80 (391) T ss_dssp CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS T ss_pred CCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCC T ss_conf 99789777846035227762998876468988722068888888432352149986799999279829999799867677 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC Q ss_conf 07778850012564250113232898604831167520377863264499999978959999988983646313873277 Q gi|254780814|r 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG 166 (803) Q Consensus 87 ~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~ 166 (803) +||++++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|+.|.|+|++|++..|++.++++ T Consensus 81 ~h~~~~~~~~Elif~~L~tg~nfd~~~~~~sgG~nGvGakl~NalS~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~- 159 (391) T 1ei1_A 81 IHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET- 159 (391) T ss_dssp BCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC- T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEEECCEECCCCEEECCC- T ss_conf 7666685100899999713677799874331688765427999961555999996998999998099397884050575- Q ss_pred CCCCEEEEEEECHHHH-HHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCC Q ss_conf 8887089998778885-421000899999999731146416999996358642101001268835776530035655688 Q gi|254780814|r 167 NDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 (803) Q Consensus 167 ~~~GT~I~F~PD~~iF-~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~ 245 (803) +++||+|+|+||+++| +...|++++|.+|++++|||+|||+|+|+|++.+ ++..|+|++||++|+++++.+..++++ T Consensus 160 ~~~gT~I~F~PD~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~i~~~d~~~~--~~~~~~~~~gl~~~~~~l~~~~~~~~~ 237 (391) T 1ei1_A 160 EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG--KEDHFHYEGGIKAFVEYLNKNKTPIHP 237 (391) T ss_dssp SCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC--CEEEECCCSHHHHHHHHHHHTSCBSSS T ss_pred CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC--CEEEEECCCCHHHHHHHHCCCCCCCCC T ss_conf 789758999979788178655669999999999855089977999960478--268887076499999986258876799 Q ss_pred CCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC Q ss_conf 52036420036999733453177541212222462166677210356888999999999862420001235761343057 Q gi|254780814|r 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 (803) Q Consensus 246 ~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Direg 325 (803) +++++..+.+++.||||++|+++|+++++||||+|+|++|||||+||+.+|+++|++|+++.++.|+.+.+++++|||++ T Consensus 238 ~~~~~~~~~~~~~veva~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~l~~~i~~~~~k~~~~k~~~~~~~~~~Ik~~ 317 (391) T 1ei1_A 238 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREG 317 (391) T ss_dssp CCEEEEEEETTEEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTT T ss_pred CCEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC T ss_conf 76899976578289999984488836899986322489997979999999999999998775440123456888899709 Q ss_pred CEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 21566652137633572100202611110321110268999987400357999877899988775545532110 Q gi|254780814|r 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 (803) Q Consensus 326 l~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~ 399 (803) |++||||+|+||+|+||||++|+|++++..|+..+.+.|..||++||..|+.|+++++++|+||++||||||+| T Consensus 318 l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~i~~a~ar~~a~karelt 391 (391) T 1ei1_A 318 LIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 391 (391) T ss_dssp EEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 49999998589967782017636974787889999999999999797999999999999999999998877049 No 3 >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=922.93 Aligned_cols=388 Identities=44% Similarity=0.747 Sum_probs=373.5 Q ss_pred CCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC Q ss_conf 67865512313542000458715432799632544565675557886860779757999838983999976844536407 Q gi|254780814|r 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88 (803) Q Consensus 9 ~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h 88 (803) +|+|++|++|+||||||+|||||||||+ ..|||||+|||||||+||+++|||+.|+|+|++||+|||+||||||||++| T Consensus 2 ~y~~~~i~~L~~le~Vr~RP~mYiGst~-~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg~isV~ddGrGIPv~~h 80 (390) T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTG-VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLM 80 (390) T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEE T ss_pred CCCHHHCEECCCCHHHHCCCCCEECCCC-CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEECCCC T ss_conf 6276879451461176539962655899-872217887666856667436999669999969985999988872664786 Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-C Q ss_conf 778850012564250113232898604831167520377863264499999978959999988983646313873277-8 Q gi|254780814|r 89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 (803) Q Consensus 89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~ 167 (803) |++++|+||||||+||||||||+++|++||||||||||||||||++|+|+|+|+|+.|+|+|++|++..+++.++.++ + T Consensus 81 ~~~~~~~~e~i~~~L~tg~nfd~~~~k~sgG~nGvGa~l~NalS~~f~v~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 160 (390) T 1kij_A 81 PEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRG 160 (390) T ss_dssp TTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECGGG T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEEEEEECCEEEEEEEECCCCCCCCEECCCCCCC T ss_conf 67797101999989845676578875302675764427652325203899980433799998488365772021667889 Q ss_pred CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCC Q ss_conf 88708999877888542100089999999973114641699999635864210100126883577653003565568852 Q gi|254780814|r 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 (803) Q Consensus 168 ~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~ 247 (803) ++||+|+|+||+++|++..|+++.|..|++++|||+|||++.+.|++.. +...|++++|+.+|+.+++.+.+++++.+ T Consensus 161 ~~gT~I~F~PD~~iF~~~~~~~~~i~~r~~~~a~l~~gl~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (390) T 1kij_A 161 KTGTRVTFKPDPEIFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG--KEEVFLDKGGVASFAKALAEGEDLLYEKP 238 (390) T ss_dssp CCEEEEEEEECHHHHTTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT--EEEEECCTTHHHHHHHHHTTTSCBSCSSC T ss_pred CCEEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CEEEEECCCCHHHHHHHHCCCCCCCCCCC T ss_conf 9807999995868745663338999888898875338846751016788--02322227626777675304776134421 Q ss_pred EEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCE Q ss_conf 03642003699973345317754121222246216667721035688899999999986242000123576134305721 Q gi|254780814|r 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 (803) Q Consensus 248 i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~ 327 (803) ++.....+.+.++++++|++++.+.++||||+|+|++|||||+||+.+|+++|++|+++.++.|+.+.+++++|||+||+ T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~i~k~i~~~~~k~~~~k~~~~~i~~~dIk~~l~ 318 (390) T 1kij_A 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLY 318 (390) T ss_dssp EEEEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEE T ss_pred CEECCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCEE T ss_conf 01023332035788630379876578988635887999746887999999999999987264344456788889972919 Q ss_pred EEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 566652137633572100202611110321110268999987400357999877899988775545532110 Q gi|254780814|r 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 (803) Q Consensus 328 ~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~ 399 (803) +||||+|+||+|+||||++|+|++++..++++++++|..||++||..|+.|+++++++|+||++||||||++ T Consensus 319 ~~Is~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~Ivek~l~~a~aR~~akk~re~v 390 (390) T 1kij_A 319 AVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 390 (390) T ss_dssp EEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999998789972682128516853788899999999999999797999999999999999999998523249 No 4 >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Probab=100.00 E-value=0 Score=905.83 Aligned_cols=385 Identities=36% Similarity=0.619 Sum_probs=361.6 Q ss_pred CCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCC Q ss_conf 67865512313542000458715432799632544565675557886860779757999838983999976844536407 Q gi|254780814|r 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH 88 (803) Q Consensus 9 ~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h 88 (803) +|+|++|++|+|||||||||||||||| |||||+||||||||||+++|||+.|+|+|++||+|||+||||||||++| T Consensus 4 ~y~~~~i~~L~~lE~Vr~RP~mYiGs~----gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg~isV~dnGrGIPv~~h 79 (390) T 1s16_A 4 TYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 (390) T ss_dssp CCSGGGCEECCTTHHHHHCGGGTSCTT----STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC T ss_pred CCCHHHCEEECCCHHHHCCCCCEECCC----CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCCEEEEEECCCCEEECCC T ss_conf 638645846145237653896678999----8520786998746506742999679999918986999988995000456 Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-C Q ss_conf 778850012564250113232898604831167520377863264499999978959999988983646313873277-8 Q gi|254780814|r 89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 (803) Q Consensus 89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~ 167 (803) |++++|+||||||+||||||||+++|++||||||||||||||||+||+|+|+|+|++|.|+|++|++..+++.++.+. + T Consensus 80 ~~~~~~~~elif~~L~tg~nfd~~~~k~sgG~nGvGakl~NalS~~f~v~v~~~~~~~~q~f~~g~~~~~~~~i~~~~~~ 159 (390) T 1s16_A 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 (390) T ss_dssp TTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTT T ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCEEEEEECCCEEEEEEEECCEEEEEEECCCCCCCCCEEEECCCCC T ss_conf 56687713888987603676788774230675762458989624107999986467689996399745672176145778 Q ss_pred CCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCC Q ss_conf 88708999877888542100089999999973114641699999635864210100126883577653003565568852 Q gi|254780814|r 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 (803) Q Consensus 168 ~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~ 247 (803) ++||+|+|+||+++|++..|++++|..|++++|||+||+++.+.|++.. ....|+|++|+.+|+.+++.++.++++.+ T Consensus 160 ~~gT~ItF~PD~~~F~~~~~~~~~i~~~~k~~a~l~~gl~i~~~~~~~~--~~~~~~~~~Gi~~y~~~~~~~~~~~~~~~ 237 (390) T 1s16_A 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 (390) T ss_dssp CCEEEEEEEECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--EEEEECCSSCHHHHHHHHHTTSCCEEEEE T ss_pred CCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEEEECCCC--EEEEEEECCCHHHHHHHHHCCCCCCCCCC T ss_conf 9968999994868704423269999999987528868955788751687--06777604867677888725898655663 Q ss_pred EEEEEEEEEEEEEEEEEECC-CCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCC Q ss_conf 03642003699973345317-75412122224621666772103568889999999998624200012357613430572 Q gi|254780814|r 248 IRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 (803) Q Consensus 248 i~~~~~~~~~~veval~~~~-~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl 326 (803) ++.....++..|||+++|++ ++.+.++||||+|+|++|||||+||+.||+++|++|+++.++.|+ +.+++++|||+|| T Consensus 238 ~~~~~~~~~~~ve~~~~~~~~~~~~~~~SFvN~I~T~~GGtHv~~~~~~l~~~i~~~~~~~~~~kk-~~~i~~~di~~~l 316 (390) T 1s16_A 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRC 316 (390) T ss_dssp EEEEEECSSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCT-TCCCCHHHHHTTE T ss_pred EEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHCCE T ss_conf 587760677259999986143443034444343766899475230799999999999997174445-6747854653776 Q ss_pred EEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1566652137633572100202611110321110268999987400357999877899988775545532110011 Q gi|254780814|r 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 (803) Q Consensus 327 ~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~a~kar~~~rrK 402 (803) ++||||+|+||+|+||||++|+|++++..|+..++++|..||++||..|+.|+++++.+|++|. +++|+++||| T Consensus 317 ~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~~~~~l~~n~~~a~~I~~k~i~~a~~r~--~~~k~~~RkK 390 (390) T 1s16_A 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRKK 390 (390) T ss_dssp EEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--HHC------- T ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCC T ss_conf 9999998479960771117306976888899999999999999797999999999999999999--9767875379 No 5 >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Probab=100.00 E-value=0 Score=809.73 Aligned_cols=361 Identities=19% Similarity=0.294 Sum_probs=318.1 Q ss_pred EECCCCCHHCCCCCCEECCCCC---------------------CCHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC- Q ss_conf 2313542000458715432799---------------------6325445656755578868607-7975799983898- Q gi|254780814|r 16 QILKGLDAVKKRPSMYIGDTDG---------------------ESGLHHMIYEVLDNAIDESLEG-YADIITVTLNMDG- 72 (803) Q Consensus 16 ~~L~gle~vrkRP~mYiG~t~~---------------------~~Gl~hlv~EiidNsvDe~~~g-~~~~I~V~i~~dg- 72 (803) |+|++|||||+|||||||||+. ..||||||||||||||||++|| +|+.|+|+|+.|+ T Consensus 7 ~~l~~lEhVr~RPgMYIGst~~~~~~~~~~~~~~~~~~~~~~~~~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d~~ 86 (400) T 1zxm_A 7 QKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN 86 (400) T ss_dssp EECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT T ss_pred CCCCHHHHHHCCCCCEECCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECCCC T ss_conf 75775779863999702777767653045427664012012268700589989999655488655798479999977999 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEEC--CEEEEEEE Q ss_conf 3999976844536407778850012564250113232898604831167520377863264499999978--95999998 Q gi|254780814|r 73 SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSF 150 (803) Q Consensus 73 sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rd--gk~~~q~f 150 (803) +|||+||||||||++||++++|+||+|||+||||||||+++|++||||||||+|||||||+||+|+++++ ++.|.|.| T Consensus 87 sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~yk~sgGlhGVG~svvNalS~~~~Vev~~~~~~~~~~q~~ 166 (400) T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTW 166 (400) T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEE T ss_pred EEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCHHHHHHCCHHHEEEEEECCCEEEEEEEC T ss_conf 89999899653200215667321024677841315668986236346445252555110341145566302305677510 Q ss_pred ECCEECCCCEEECCCCCCCCEEEEEEECHHHHHHHHCCHHH---HHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCC Q ss_conf 89836463138732778887089998778885421000899---999999731146416999996358642101001268 Q gi|254780814|r 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT---LQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 (803) Q Consensus 151 ~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~---l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~ 227 (803) .+|+...++..++.+.+++||+|+|+||++||+...|++++ +.+|++++|+|++|++|.++|++. +.. T Consensus 167 ~~~~~~~~~~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~~~~l~~r~~~la~l~~~~~v~~~~~~~---------~~~ 237 (400) T 1zxm_A 167 MDNMGRAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKL---------PVK 237 (400) T ss_dssp ETTTTEECCCEEEECCSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEEC---------CCC T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCC T ss_conf 23566455444557789995799998574401445515899999887789862777741898157656---------566 Q ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHC Q ss_conf 83577653003565568852036420036999733453177541212222462166677210356888999999999862 Q gi|254780814|r 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 (803) Q Consensus 228 Gi~~fv~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~ 307 (803) |+.+|++....+..+....++.+..+..+..||+|++|++++.+++ ||||+|+|++|||||+||++||++++++|+++. T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~~i-SfvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~ 316 (400) T 1zxm_A 238 GFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKK 316 (400) T ss_dssp SHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCEEE-EEETTEECTTEEHHHHHHHHHHHHHHHHHHTTC T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-EEECCEECCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 7205224204332112476247876506852999998647665211-000340068997764368888998777788762 Q ss_pred CCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 42000123576134305721566652137633572100202611110321110268999987400357999877899988 Q gi|254780814|r 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 (803) Q Consensus 308 ~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ 387 (803) + +.+.+++++||||||++||||+|+||||+||||+||+|++++..+...+.++|..++.. ..|+++++..++ T Consensus 317 ~---k~~~~i~~~Diregl~~visv~i~~PqFegQTK~kL~s~~~~~~~~~~l~~~fi~~~~~-----~~i~e~l~~~~~ 388 (400) T 1zxm_A 317 N---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAIG-----CGIVESILNWVK 388 (400) T ss_dssp C-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTT-----C----------- T ss_pred C---CCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHH T ss_conf 5---46687899999749799999983899457821077148631251431368999999888-----799999999999 Q ss_pred HHHHHHH Q ss_conf 7755455 Q gi|254780814|r 388 VRDAARR 394 (803) Q Consensus 388 ar~~a~k 394 (803) +|++++. T Consensus 389 ~k~~~~l 395 (400) T 1zxm_A 389 FKAQVQL 395 (400) T ss_dssp ------- T ss_pred HHHHHHH T ss_conf 7588986 No 6 >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622} Probab=100.00 E-value=0 Score=802.56 Aligned_cols=348 Identities=23% Similarity=0.395 Sum_probs=323.4 Q ss_pred ECCC--CCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 3135--42000458715432799632544565675557886860779757999838983999976844536407778850 Q gi|254780814|r 17 ILKG--LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94 (803) Q Consensus 17 ~L~g--le~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~ 94 (803) .|.| |||||||||||||||+ ++|||||||||||||||||+||||+.|+|+|++||+|||+||||||||++| T Consensus 6 ~~~~~~lE~VrkRPgMYiGst~-~~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg~IsV~dnGrGIPv~~~------ 78 (369) T 3cwv_A 6 HLPGGIVENVRKRPGMYCGDVG-EYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENL------ 78 (369) T ss_dssp ---CCHHHHHHHSTHHHHSCSS-HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCHHHH------ T ss_pred CCCCCCCCCHHCCCCCEECCCC-CCCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCCCEEEEECCCCCEEEEE------ T ss_conf 3788730100059987427899-986558998886532207644888779999999996999928999522077------ Q ss_pred EEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECC-----CCCCC Q ss_conf 0125642501132328986048311675203778632644999999789599999889836463138732-----77888 Q gi|254780814|r 95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-----AGNDT 169 (803) Q Consensus 95 ~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~-----~~~~~ 169 (803) ++|||||||+++.|+++||+||+| |||||||++|+|+|+|+|+.|.|+|++|++..+.+.+.. +..++ T Consensus 79 ------~~l~~g~~f~~~~~~~~gG~~Gg~-svvNalS~~~~Vev~r~~~~~~~~f~~g~~~~~~~~~~~~k~~~~~~~~ 151 (369) T 3cwv_A 79 ------VRVATGAGFLGRPPGDGWGWDSML-VVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER 151 (369) T ss_dssp ------HHHHTTTTGGGSSCCCSTTTTSSH-HHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCCSSCCSE T ss_pred ------EEEEECCCCCCCCCCCCCCCCCEE-EEEEEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEECCCCCCC T ss_conf ------887410233687776653466539-9999982089999997997999988857254788351440352676689 Q ss_pred CEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCEE Q ss_conf 70899987788854210008999999997311464169999963586421010012688357765300356556885203 Q gi|254780814|r 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 (803) Q Consensus 170 GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~~l~~~~~~~~~~~i~ 249 (803) ||+|+|+||+++|++..|+++.+..|++++||||+||++.|.|++.+ +...|+|++|+++|++|++.+..++++++++ T Consensus 152 gT~i~F~pD~~iF~~~~~~~~~i~~~lr~~a~l~~gl~i~l~~~~~~--~~~~~~~~~g~~~fv~~l~~~~~~l~~~~~~ 229 (369) T 3cwv_A 152 GVRVHFVPDATIFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRG--ERTLWHLPGGVAQWAHVLTEARPQLHPEPVV 229 (369) T ss_dssp EEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT--EEEEEECTTHHHHHHHHHHTTSCBSSSSCEE T ss_pred CCEEEEECCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCEEEEECCC--CEEEEEECCCHHHHHHHHHCCCCCCCCCCEE T ss_conf 97899966635544226527888644200443069960002584079--4468973574788999875146623547789 Q ss_pred EEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEE Q ss_conf 64200369997334531775412122224621666772103568889999999998624200012357613430572156 Q gi|254780814|r 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 (803) Q Consensus 250 ~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~v 329 (803) ++++.+++.||||++|++++.++++||||+|+|++|||||+||++||+++|++|++ +.+.+++++||||||+|| T Consensus 230 ~~~~~~~~~vEval~~~~~~~~~~~SFVN~I~T~~GGTHv~g~~~~l~k~i~~~~k------k~k~~i~~~dIregL~~v 303 (369) T 3cwv_A 230 FDFTWDGLRVQCALQWCEDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWARVAQGLTAI 303 (369) T ss_dssp EEEEETTEEEEEEEEEBSSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEE T ss_pred EEEEEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHHCCCEEE T ss_conf 99776655389999974888623786347874899988688699999999998743------111358788875287899 Q ss_pred EEEECC--CCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 665213--763357210020261111032111026899998740035799987789998 Q gi|254780814|r 330 LSIKMP--DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 (803) Q Consensus 330 isvki~--nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~ 386 (803) |||+++ ||+|+||||+||+||+|+++|++++.+.|..||++||..|+.|++|++.|. T Consensus 304 isV~~~~~nP~FegQTKekL~~~~v~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369) T 3cwv_A 304 VAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369) T ss_dssp EEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC----- T ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC T ss_conf 99987898998078474761698799999999999999999979899999999998666 No 7 >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Probab=100.00 E-value=0 Score=809.34 Aligned_cols=372 Identities=22% Similarity=0.329 Sum_probs=307.1 Q ss_pred CCCCCCHHHCEECCCCCHHCCCCCCEECCCCCC----------------------CHHHHHHHHHHHHHHHHHHHCC-CC Q ss_conf 223678655123135420004587154327996----------------------3254456567555788686077-97 Q gi|254780814|r 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGE----------------------SGLHHMIYEVLDNAIDESLEGY-AD 62 (803) Q Consensus 6 ~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~----------------------~Gl~hlv~EiidNsvDe~~~g~-~~ 62 (803) .+..|.++.||+|++|||||||||||||||+.. .|||||||||||||+||+++|+ |+ T Consensus 8 ~~~~~~~~~y~~l~~lE~VrkRPgMYIGs~~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~l~~EildNavDe~~~g~~~~ 87 (418) T 1pvg_A 8 TEPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMK 87 (418) T ss_dssp ----CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCC T ss_pred CCCCCHHHCCCCCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCHHCCCCCCCCEEEEEEEEEEECHHHHHHCCCCCC T ss_conf 78876565140466310865399971246788983268863355400002243466002465689998024765168887 Q ss_pred EEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEE- Q ss_conf 5799983-89839999768445364077788500125642501132328986048311675203778632644999999- Q gi|254780814|r 63 IITVTLN-MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK- 140 (803) Q Consensus 63 ~I~V~i~-~dgsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~- 140 (803) .|+|+|| +||||||+||||||||++||++++|+||+|||+||||||||+++|++||||||||||||||||+||.|+|. T Consensus 88 ~I~V~i~~~dgsisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~yk~SGGlhGvGasvvNalS~~f~vev~~ 167 (418) T 1pvg_A 88 RIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETAD 167 (418) T ss_dssp EEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEE T ss_pred EEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHEEEE T ss_conf 79999967998899996990146104366786411578877403554457753040787552640227663565317676 Q ss_pred -ECCEEEEEEEECCEECCCCEEECC-CCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC Q ss_conf -789599999889836463138732-778887089998778885421000899999999731146416999996358642 Q gi|254780814|r 141 -REGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 (803) Q Consensus 141 -rdgk~~~q~f~~g~~~~~l~~~~~-~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~ 218 (803) |+|+.|.|+|++|++..+++.+.. ...++||+|+|+||++||+...|+++++..|++++|+|++++++.+.+.+.. T Consensus 168 ~r~gk~y~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD~~iF~~~~~~~d~l~~~~~~~~~L~~~l~~~~~~~~~~-- 245 (418) T 1pvg_A 168 LNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGK-- 245 (418) T ss_dssp TTTTEEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETTE-- T ss_pred CCCCEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-- T ss_conf 149879999994684113442010135689953999983856506611116899999999998718750899971687-- Q ss_pred CEEEECCCCCCHHHHHHHCCCCC-------CCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCEEHH Q ss_conf 10100126883577653003565-------56885203642003699973345317754121222246216667721035 Q gi|254780814|r 219 REITMFYKGGIEAFVSYLDRHKK-------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 (803) Q Consensus 219 ~~~~f~~~~Gi~~fv~~l~~~~~-------~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T~~GGtHv~g 291 (803) ....++|++|+..|+.+++.... +..++++.+..+..+..||||++|++.+.+++ ||||+|+|++|||||+| T Consensus 246 ~~~~~~~~~~i~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~~~~~~~~-SfvN~I~T~~GGTHv~g 324 (418) T 1pvg_A 246 SLKIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQI-SFVNSIATTMGGTHVNY 324 (418) T ss_dssp ECCCCSHHHHHHTTTTTC-----------------CCSCEEEEEETTEEEEEEECSSSCEEE-EEETTEECTTCBHHHHH T ss_pred CEEEECCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCEEEE-EEECCCCCCCCCCCHHH T ss_conf 14662036754640244333300025666665676306876403760899998615650588-73546147999680799 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHH Q ss_conf 68889999999998624200012357613430572156665213763357210020261111032111026899998740 Q gi|254780814|r 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 (803) Q Consensus 292 f~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n 371 (803) |++||+|+|++|+. |+.+.+++++|||+||++||||+|+||||+||||+||+|+..+-.....+.++ |+... T Consensus 325 ~~~al~~~i~~~~~-----k~~~~ki~~~dIregl~~vIsv~i~nPqF~gQTK~kL~s~~~~f~s~~~~~~~---~l~ki 396 (418) T 1pvg_A 325 ITDQIVKKISEILK-----KKKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLE---YINKI 396 (418) T ss_dssp HHHHHHHHHHHHHC-----C-----CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCHH---HHHHH T ss_pred HHHHHHHHHHHHHH-----HHCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH---HHHHH T ss_conf 99999999998864-----30346789999960929999998489848972027625951105787546299---99998 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 0357999877899988775 Q gi|254780814|r 372 PLEAKIIVKKVLDASMVRD 390 (803) Q Consensus 372 ~~~ak~i~~k~~~a~~ar~ 390 (803) .+ ..|++++++.+++|+ T Consensus 397 ~k--~~i~~~i~~~a~~k~ 413 (418) T 1pvg_A 397 MK--TDLATRMFEIADANE 413 (418) T ss_dssp TT--SHHHHHHHHHHHC-- T ss_pred HH--HHHHHHHHHHHHHHH T ss_conf 87--799999999998669 No 8 >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* Probab=100.00 E-value=0 Score=685.40 Aligned_cols=238 Identities=53% Similarity=0.878 Sum_probs=219.4 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHH Q ss_conf 11001100124676676666555555521799982557543223346544302330056203344305876632366788 Q gi|254780814|r 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 (803) Q Consensus 397 ~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~ 476 (803) ++.++|++++.++|||||+||+++++++|||||||||||+|||+|||||+|||||||||||||||+++.++|++|+||++ T Consensus 20 ~~~~~k~~~~~~~lpgKL~Dc~~k~~~~ceL~l~EGDSA~g~a~~grdr~~~gv~PLRGKiLNv~~~~~~ki~~N~Ei~~ 99 (268) T 3k9f_C 20 DDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINT 99 (268) T ss_dssp ----------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHH T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHCHHHHH T ss_conf 56533101335899852314478996654799977768751300326878789975388637354465989875888889 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECC----CEEE Q ss_conf 887625787753321235673738998508888532899999999963077874895999438337887267----1799 Q gi|254780814|r 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK----SLQY 552 (803) Q Consensus 477 l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K----~E~Y 552 (803) |++||||++|++ ||+++||||||||||||||||+||+||||||||+|||+||++|+||+++||||+|++|+ ...| T Consensus 100 L~~~LGl~~g~~-~d~~~LRYgkIiImTDADvDGsHI~~LLlnfF~~~wP~Li~~G~i~~~~tPl~kv~~g~~~~~~~~y 178 (268) T 3k9f_C 100 MIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAY 178 (268) T ss_dssp HHHHHCSCC--C-CCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEE T ss_pred HHHHHCCCCCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCEEEE T ss_conf 998744467887-8743376454899827998858899999999999749970289668953870899936887632677 Q ss_pred EECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 81457898999850011000014577654354689999999999999998643445799999887421135112357789 Q gi|254780814|r 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 (803) Q Consensus 553 ikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~ 632 (803) ..++.+++.+. T Consensus 179 ~~~~~~~~~~~--------------------------------------------------------------------- 189 (268) T 3k9f_C 179 AWTDGELEELR--------------------------------------------------------------------- 189 (268) T ss_dssp ECSHHHHHHHH--------------------------------------------------------------------- T ss_pred EECCCHHHHHH--------------------------------------------------------------------- T ss_conf 65021458999--------------------------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 99999998876531000011002445670599999518530266466774164278999988887751145502765582 Q gi|254780814|r 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 (803) Q Consensus 633 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 712 (803) T Consensus 190 -------------------------------------------------------------------------------- 189 (268) T 3k9f_C 190 -------------------------------------------------------------------------------- 189 (268) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred EEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 58739989999999986306762860377778895572230389613402123679889888786564189987628998 Q gi|254780814|r 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 (803) Q Consensus 713 ~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFI 792 (803) ....++.+||||||||||||+|+|||||||++|+|+||+++|+.+|+++|.+|||++|++||+|| T Consensus 190 ---------------~~~~k~~~ikyyKGLGe~~~~E~ke~f~np~~r~l~~v~~~d~~~~~~~~~~l~gk~~d~RK~wi 254 (268) T 3k9f_C 190 ---------------KQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWI 254 (268) T ss_dssp ---------------HHSCTTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHH T ss_pred ---------------HHHCCCCEEEECCCCCCCCHHHHHHHHCCHHHEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf ---------------97188862575787787999999998359524689997447478799999987599968999999 Q ss_pred HHHHHHC Q ss_conf 8524412 Q gi|254780814|r 793 QENSLPS 799 (803) Q Consensus 793 e~NAL~v 799 (803) ++||.-+ T Consensus 255 ~~n~~~~ 261 (268) T 3k9f_C 255 EDNVKFT 261 (268) T ss_dssp HHHCCCC T ss_pred HHHCCHH T ss_conf 9834302 No 9 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=100.00 E-value=0 Score=680.81 Aligned_cols=256 Identities=42% Similarity=0.692 Sum_probs=230.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 77899988775545532110011001246766766665555555217999825575432233465443023300562033 Q gi|254780814|r 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 (803) Q Consensus 380 ~k~~~a~~ar~~a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilN 459 (803) +.+++.|++|. |+ +..++||+++..++|||||+||+++++++|||||||||||+|||++||||+||||||||||+|| T Consensus 2 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~p~kl~d~~~~~~~~~~l~l~EGdSA~g~~~~~rd~~~~~v~plrGK~lN 78 (767) T 2xkj_E 2 EMAISKAGRRL--KA-AKKVERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN 78 (767) T ss_dssp --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC T ss_pred HHHHHHHHHHH--HH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHH T ss_conf 57999999999--98-8752155556679998644010789966678999777787602001068786788653774031 Q ss_pred HHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC Q ss_conf 44305876632366788887625787753321235673738998508888532899999999963077874895999438 Q gi|254780814|r 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 (803) Q Consensus 460 v~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~p 539 (803) |++|+.++|++|+||++|++||||++|+ +|+++|||||||||||||||||||+||||||||+|||+||++||||+|+| T Consensus 79 v~~~~~~~~~~N~ei~~l~~~lGl~~~~--~~~~~lrYg~i~imtD~D~DG~hI~~Lll~ff~~~~p~L~~~g~~~~~~t 156 (767) T 2xkj_E 79 TWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 156 (767) T ss_dssp CTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECC T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHCCCCEEEEEC T ss_conf 3258888887269999999997899798--86212777847999789977037999999999987899754796589727 Q ss_pred CEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 33788726717998145789899985001100001457765435468999999999999999864344579999988742 Q gi|254780814|r 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 (803) Q Consensus 540 pl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~ 619 (803) |||||++||+..|+.|+.|+++++-+.. T Consensus 157 Pl~k~~~~~~~~~~~~~~e~~~~~~~~~---------------------------------------------------- 184 (767) T 2xkj_E 157 PLFRIDIGKDVHYALDDEELETILKNVK---------------------------------------------------- 184 (767) T ss_dssp CSEEEEETTEEEEESSHHHHHHHHHTCC---------------------------------------------------- T ss_pred CEEEEECCCEEEECCCHHHHHHHHHHHC---------------------------------------------------- T ss_conf 6799962986684477699999888723---------------------------------------------------- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHH Q ss_conf 11351123577899999999887653100001100244567059999951853026646677416427899998888775 Q gi|254780814|r 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 (803) Q Consensus 620 ~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~ 699 (803) T Consensus 185 -------------------------------------------------------------------------------- 184 (767) T 2xkj_E 185 -------------------------------------------------------------------------------- 184 (767) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HCCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHH- Q ss_conf 1145502765582587399899999999863067628603777788955722303896134021236798898887865- Q gi|254780814|r 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS- 778 (803) Q Consensus 700 ~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~- 778 (803) +.++.+||||||||||||+|||||||||++|+|.+|.++|+..+++.|. T Consensus 185 ------------------------------~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (767) T 2xkj_E 185 ------------------------------GNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDK 234 (767) T ss_dssp ------------------------------SSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHH T ss_pred ------------------------------CCCCCCCHHCCCCCCCCHHHHHHHCCCHHHEEEEECCCCCHHHHHHHHHH T ss_conf ------------------------------79763200013201024699999722843468862356530557999999 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 641899876289988524412366 Q gi|254780814|r 779 RLMGDEVEPRREFIQENSLPSALD 802 (803) Q Consensus 779 ~LMGD~VEPRReFIe~NAL~vNLD 802 (803) .+||+.+++||+||++++-.+.+| T Consensus 235 ~~~~~~~~~Rk~~l~~~~~~~~~d 258 (767) T 2xkj_E 235 LLAKKRAADRKQWLEQKGNLADIT 258 (767) T ss_dssp HHCGGGHHHHHHHHHHHGGGCC-- T ss_pred HHCCCCHHHHHHHHHHCCCCCCEE T ss_conf 865897077999998467412110 No 10 >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Probab=100.00 E-value=0 Score=664.10 Aligned_cols=234 Identities=53% Similarity=0.845 Sum_probs=212.8 Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 66665555555217999825575432233465443023300562033443058766323667888876257877533212 Q gi|254780814|r 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 (803) Q Consensus 413 KL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~~g~~~~~~ 492 (803) -|.||+++||++|||||||||||+|||+|||||+||||||||||+||||+++.++|++|+||++|++||||++|++ ||+ T Consensus 8 ~l~d~~~~~~~~~~L~l~EGDSA~g~a~~grd~~~~gv~PLrGK~lNv~~~~~~ki~~N~Ei~~l~~~lG~~~~~~-~d~ 86 (242) T 3m4i_A 8 HVDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDI 86 (242) T ss_dssp -------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCSGGG-CCG T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCC-CCC T ss_conf 4655567881222899977767401210324778667841589536152243878764268999999966787876-770 Q ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHH Q ss_conf 35673738998508888532899999999963077874895999438337887267179981457898999850011000 Q gi|254780814|r 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 (803) Q Consensus 493 ~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~ 572 (803) ++|||||||||||||+||+||+||||||||++||+||++|+|||++||||+|+.+|+..|.....+...+.++...+.. T Consensus 87 ~~LRYgkIiimtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~v~i~~~Pl~~vk~~k~~~~~~~~~~~~~~~~~~~~k~~- 165 (242) T 3m4i_A 87 GKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAG- 165 (242) T ss_dssp GGCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHT- T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHCCCEEEECCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHC- T ss_conf 0056461799837885522037789999985478999729768971884589970673387056688999999856630- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 01457765435468999999999999999864344579999988742113511235778999999998876531000011 Q gi|254780814|r 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 (803) Q Consensus 573 l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~ 652 (803) T Consensus 166 -------------------------------------------------------------------------------- 165 (242) T 3m4i_A 166 -------------------------------------------------------------------------------- 165 (242) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred EECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHHHHHHHHC Q ss_conf 00244567059999951853026646677416427899998888775114550276558258739989999999986306 Q gi|254780814|r 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 (803) Q Consensus 653 ~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkK 732 (803) ....+ T Consensus 166 ---------------------------------------------------------------------------~~~~k 170 (242) T 3m4i_A 166 ---------------------------------------------------------------------------KKINK 170 (242) T ss_dssp ---------------------------------------------------------------------------CCCCT T ss_pred ---------------------------------------------------------------------------CCCCC T ss_conf ---------------------------------------------------------------------------44466 Q ss_pred CCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CCCC Q ss_conf 7628603777788955722303896134021236798898887865641899876289988524412-3669 Q gi|254780814|r 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 (803) Q Consensus 733 G~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v-NLDI 803 (803) +.+||||||||||||+|||||||||++|+|.+|+++|+.+||++|++|||++|++||+||++||.+| |||| T Consensus 171 ~~~IkyyKGLGe~~~~Elke~~~np~~r~l~~v~~dd~~~ad~~f~~lmgk~ad~RK~wI~~~a~~v~~lDi 242 (242) T 3m4i_A 171 EDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV 242 (242) T ss_dssp TTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC--------------------- T ss_pred CCCEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 665210002022689999998449030468873168689999999998189957999999986150542789 No 11 >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Probab=100.00 E-value=0 Score=713.67 Aligned_cols=579 Identities=12% Similarity=0.073 Sum_probs=462.1 Q ss_pred CCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCCC----EEEEEECCC Q ss_conf 2367865512313542000458715432799632544565675557886-86077975799983898----399997684 Q gi|254780814|r 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNMDG----SCTVSDNGR 81 (803) Q Consensus 7 ~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe-~~~g~~~~I~V~i~~dg----sisV~dnGr 81 (803) -+.|=|+..+.++..|-..+.+.|.-.||. .+||||+|+|+||||+|+ +.+|||+.|.|+|+.|| +|+|.|||| T Consensus 5 ~~~~~~~~~~~~~~~ef~~~~~~~l~~~~~-~~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~ 83 (621) T 2q2e_B 5 IAEELAKKQKSISVAEFFEKNRQILGFDSA-PRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGP 83 (621) T ss_dssp ------CCCCCSCSHHHHHHSTTTSSCSSH-HHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECC T ss_conf 899998522217899999973767457886-2178998999997188689763999825999996899646999998489 Q ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCE-----EEEEEE--ECCEEEEEEEECCE Q ss_conf 45364077788500125642501132328986048311675203778632644-----999999--78959999988983 Q gi|254780814|r 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW-----LKLRIK--REGNIYEMSFINGI 154 (803) Q Consensus 82 GIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~-----~~v~v~--rdgk~~~q~f~~g~ 154 (803) |||++.|+ .+||+||+||||+ .|+.|||+||||+++||++|.+ ++|.+. ++++.|...|..+. T Consensus 84 Gm~~d~~~--------~~l~~l~~sgK~~--~~~~s~G~~GvG~~gv~~~S~~~va~~v~V~s~~~~~~~~~~~~~~~~~ 153 (621) T 2q2e_B 84 GIVREQIP--------KVFAKLLYGSRFH--ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINT 153 (621) T ss_dssp CCCGGGHH--------HHHSCCCCC--CC--CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCS T ss_pred CCCHHHHH--------HHHHEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCC T ss_conf 99989999--------9860846677876--6511799766567688887686428638999961798725999841566 Q ss_pred ECCCCEE-ECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHH Q ss_conf 6463138-732778887089998778885421000899999999731146416999996358642101001268835776 Q gi|254780814|r 155 LDNPLVV-TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 (803) Q Consensus 155 ~~~~l~~-~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv 233 (803) ....... ...+...+++.++++||...|....+..+.|.+|++++|++||+++|.|.+++.. .+.|+... T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lr~~a~~~~~~~i~~~~~~~~-----~~~~~~~~---- 224 (621) T 2q2e_B 154 STNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGN-----EEVFERAT---- 224 (621) T ss_dssp SSCSCCCCCEEECCCSCSSCCCEEEECSCCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTSC-----CEEEECCC---- T ss_pred CCCCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-----EEEEECCC---- T ss_conf 556773110365566444047974022343012268999999999985087856998648997-----06873455---- Q ss_pred HHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCC-CCCCCEEHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 5300356556885203642003699973345317754121222246216-667721035688899999999986242000 Q gi|254780814|r 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ-KDGGTHLSGLRSALTRQITSYVEKSFGSKK 312 (803) Q Consensus 234 ~~l~~~~~~~~~~~i~~~~~~~~~~veval~~~~~~~e~i~SfvN~I~T-~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk 312 (803) +.++ +. ..+|..+|++.+.+.+.+|++++.+ ..+|+|..+|+.+.++.++.|+...++.++ T Consensus 225 e~~~-------~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (621) T 2q2e_B 225 DKMP-------EP-----------AEEILPHPEGIELGTLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKAAGLDPE 286 (621) T ss_dssp CCCC-------CC-----------CCCCCCCSTTCCHHHHHHHHHHCC-----CTTSSSSCC--CHHHHHHHHTTTCCTT T ss_pred CCCC-------CC-----------CCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCC T ss_conf 4579-------86-----------61124088765289999998536777660168764020049999999976588855 Q ss_pred CC-CCCCHHHHHCCCEEEEEEECCCCCCCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12-35761343057215666521376335721002026111103211102689999874003579998778999887755 Q gi|254780814|r 313 DK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 (803) Q Consensus 313 ~k-~~~~~~Diregl~~visvki~nP~F~gQTK~kL~s~~v~~~v~~~v~~~l~~~l~~n~~~ak~i~~k~~~a~~ar~~ 391 (803) .+ ..+.++++++++.+++++++++|++++|++ +++...+..+...+...|..|+.++|..++.+.++...+.+++.+ T Consensus 287 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~e~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (621) T 2q2e_B 287 IDPHALGRHEARKLIEAFEKVKIMAPPTDCLSP--IGEDLIYRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGN 364 (621) T ss_dssp SCSSSCCSSSSTTTTHHHHTSCCSCCCSTTCCC--CCHHHHHHHHHHHSCCSEEECCBCCCEEETTEEEEEEEEEEESSS T ss_pred CCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHH T ss_conf 472328999998466115766624896435786--677999999999999999999865977553278999999997205 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCH-HHHHC Q ss_conf 45532110011001246766766665555555217999825575432233465443023300562033443058-76632 Q gi|254780814|r 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLS 470 (803) Q Consensus 392 a~kar~~~rrK~~~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~-~~i~~ 470 (803) +.|++...++|.+.....||++++||++++++.|+|+++|||||+|+++++|++.+|+++|+|||+||+.++.. +.+.- T Consensus 365 ~~k~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~l~~y~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~k~~~~~~~~~ 444 (621) T 2q2e_B 365 LPKEEKISIMRFANRVPLLYQQGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDAIADIPVI 444 (621) T ss_dssp SCSSSCCCEEEEETTBCCCSCCTTCHHHHHHHHSCCTTTTCCCCSSSSCCSSCCEEEEEECSSCCBSSSSSSSBCCCHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 43155156665442355554555555126511200445413465676776640101032443153778888730137889 Q ss_pred CHHHHHHHHHHCCCCCC---CCCCCCCCCCCCEEEEECCCCCCCCHHHHHHH-------HHHHHHHHHHHCCEEEEECCC Q ss_conf 36678888762578775---33212356737389985088885328999999-------999630778748959994383 Q gi|254780814|r 471 SQEIGTLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLT-------FFFRQMPSLIHNGFLYIIKPP 540 (803) Q Consensus 471 n~Ei~~l~~~lG~~~g~---~~~~~~~lrY~kiiimtDaD~DG~HI~~Lllt-------ff~~~~~~li~~g~~yia~pp 540 (803) +++|...+..+|.+++. +.++....+|.+++||+|+|.+|.||++||.+ +|+|+|+.|+..|++|+|+|| T Consensus 445 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~k~~~i~~~~~~~~~~~~~ll~~~~~~~~~~~~r~~~~l~~~~~v~~~~~~ 524 (621) T 2q2e_B 445 KEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPDINPVVAKIMGNLLVHRVIKNNGDG 524 (621) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTTSCSSSCCCSHHHHHHHTTCEEEEEEECCSSSC T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 99999999999886502132256688888756766554157899999986141256789999985454004358966688 Q ss_pred EEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 37887267179981457898999850011000014577654354689999999999999998643445799999887421 Q gi|254780814|r 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 (803) Q Consensus 541 l~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~ 620 (803) ||++.......+..++.. ... T Consensus 525 l~~~~~~~~~~~~~~~~~------------~~~----------------------------------------------- 545 (621) T 2q2e_B 525 TVDVAIKVKNFGTSAYSF------------RVH----------------------------------------------- 545 (621) T ss_dssp CEEEEEEECC----CCCE------------EEC----------------------------------------------- T ss_pred CCCEEEEEHHHHHHHHHH------------HHH----------------------------------------------- T ss_conf 764578623132167659------------999----------------------------------------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 13511235778999999998876531000011002445670599999518530266466774164278999988887751 Q gi|254780814|r 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 (803) Q Consensus 621 ~l~~~~d~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~ 700 (803) ... T Consensus 546 ------------------------------~~~----------------------------------------------- 548 (621) T 2q2e_B 546 ------------------------------EML----------------------------------------------- 548 (621) T ss_dssp ------------------------------CEE----------------------------------------------- T ss_pred ------------------------------HHH----------------------------------------------- T ss_conf ------------------------------852----------------------------------------------- Q ss_pred CCCCEEEEECCCEEEECCHHHHHHHHHHHHHCCCEEEECC-CCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHH-HHHH Q ss_conf 1455027655825873998999999998630676286037-7778895572230389613402123679889888-7865 Q gi|254780814|r 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK-GLGEMNASQLWETTLNPDTRSLLRVKITDASQAD-DLFS 778 (803) Q Consensus 701 ~~~~~~l~~~~~~~~i~s~~el~~~i~~~gkKG~sIQRYK-GLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad-~iF~ 778 (803) ....++ ..||++ |++||||+|||||||||++|+|+||+++|+.++| ..+. T Consensus 549 ---------------------------~~~~~~-~~~~~~~~~~e~~~~~lwettm~p~~r~~i~~~i~~~~~~~~~~~~ 600 (621) T 2q2e_B 549 ---------------------------PCKVSG-AKPEPKVVTMGNDYDYVWDISASAGSSKVLSYKIESASEEELQKLP 600 (621) T ss_dssp ---------------------------SCCC----CCCCCEEECSSSEEECEEECCCTTCEEEECCCCSSCGGGSCCCCC T ss_pred ---------------------------HHCCCC-CHHHCCCCCCCCCHHHHHHHCCCCCCCEEEEEEECCHHHCCHHHHH T ss_conf ---------------------------311443-2000133466788778877333867724899984670225244427 Q ss_pred HHCCCCCCCHH Q ss_conf 64189987628 Q gi|254780814|r 779 RLMGDEVEPRR 789 (803) Q Consensus 779 ~LMGD~VEPRR 789 (803) .||++.|+||. T Consensus 601 ~l~~~~v~~~~ 611 (621) T 2q2e_B 601 QLIVEGIEEEL 611 (621) T ss_dssp BBCC------- T ss_pred HHHHCCCCHHH T ss_conf 87748658656 No 12 >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Probab=100.00 E-value=0 Score=574.31 Aligned_cols=226 Identities=29% Similarity=0.439 Sum_probs=202.4 Q ss_pred CCCCCCCCCCCC---CCCCCCEEEEEEECCCC-----CCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHH Q ss_conf 467667666655---55555217999825575-----4322334654430233005620334430587663236678888 Q gi|254780814|r 407 IASLPGKLADCS---ERDPKKSELFLVEGDSA-----GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 (803) Q Consensus 407 ~~~lpgKL~Dc~---~k~~~~~eL~ivEGDSA-----ggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~ 478 (803) ..++| ||.||+ ++++++||||||||||| +|++++||| ||||||||||||||++|+.+||++|+||++|+ T Consensus 3 ~~~~p-kl~da~~ag~~~~~~~~L~l~EGdSA~~~~~~g~~~~~rd--~~g~~plrGK~lN~~~~~~~~~~~n~ei~~l~ 79 (757) T 3l4j_A 3 ITNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIK 79 (757) T ss_dssp CCSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCST--TEEEEEECSSCCCCTTCCHHHHHHCHHHHHHH T ss_pred CCCCC-CHHHHHHHCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCC--CEEEEECCCCEEECCCCCHHHHHHCHHHHHHH T ss_conf 67987-6555654079986451799965758522112765321664--37885337733001469888886159999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-CCEEEEECCCEEEEEE---CCCEEEEE Q ss_conf 7625787753321235673738998508888532899999999963077874-8959994383378872---67179981 Q gi|254780814|r 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH-NGFLYIIKPPLYGITR---GKSLQYVK 554 (803) Q Consensus 479 ~~lG~~~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~-~g~~yia~ppl~~~~~---~K~E~Yik 554 (803) +||||++|+++.|+++||||||||||||||||+||+||||||||+|||+|++ +||||+++||||||+. +|...++. T Consensus 80 ~~lG~~~~~~~~~~~~lrYg~i~imtD~D~DG~hI~~Ll~~~f~~~~p~L~~~~g~i~~~~tPl~~~~~~~~~~~~~~fy 159 (757) T 3l4j_A 80 KIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFY 159 (757) T ss_dssp HHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEES T ss_pred HHHCCCCCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEECCEEEEEECCCCCCEEECC T ss_conf 99778979887861127768589998788870379999999998868897355998999969829998068875011033 Q ss_pred CHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 45789899985001100001457765435468999999999999999864344579999988742113511235778999 Q gi|254780814|r 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 (803) Q Consensus 555 DD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~ 634 (803) +..|.+.+.-.. T Consensus 160 ~~~e~~~~~~~~-------------------------------------------------------------------- 171 (757) T 3l4j_A 160 NMPDYEKWREEE-------------------------------------------------------------------- 171 (757) T ss_dssp SHHHHHHHHHHT-------------------------------------------------------------------- T ss_pred CHHHHHHHHHHH-------------------------------------------------------------------- T ss_conf 254999987651-------------------------------------------------------------------- Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEE Q ss_conf 99999887653100001100244567059999951853026646677416427899998888775114550276558258 Q gi|254780814|r 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 (803) Q Consensus 635 ~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 714 (803) T Consensus 172 -------------------------------------------------------------------------------- 171 (757) T 3l4j_A 172 -------------------------------------------------------------------------------- 171 (757) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 73998999999998630676286037777889557223038961340212367988988878656418998762899885 Q gi|254780814|r 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 (803) Q Consensus 715 ~i~s~~el~~~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~ 794 (803) ..+++..||||||||||||+|||||||||++|++.+++++|+ .++.++..+||+.+++||+||++ T Consensus 172 --------------~~~~~~~i~yyKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~F~k~~~~~RK~wL~~ 236 (757) T 3l4j_A 172 --------------SHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-DKDYIDLAFSKKKADDRKEWLRQ 236 (757) T ss_dssp --------------GGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTT-HHHHHHHHHCTTCHHHHHHHHHH T ss_pred --------------CCCCCCCCEEECCCCCCCHHHHHHEECCCCCCEEEEEECCCH-HHHHHHHHHHCCCCHHHHHHHHC T ss_conf --------------677643200104767676011244001554336999964615-78899999721353058999742 Q ss_pred HHHH Q ss_conf 2441 Q gi|254780814|r 795 NSLP 798 (803) Q Consensus 795 NAL~ 798 (803) +--. T Consensus 237 ~~~~ 240 (757) T 3l4j_A 237 YEPG 240 (757) T ss_dssp CCTT T ss_pred CCCC T ss_conf 6654 No 13 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Probab=100.00 E-value=0 Score=563.21 Aligned_cols=198 Identities=67% Similarity=1.112 Sum_probs=192.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHCCHHHHHHHHHHCCC Q ss_conf 12467667666655555552179998255754322334654430233005620334430587663236678888762578 Q gi|254780814|r 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 (803) Q Consensus 405 ~~~~~lpgKL~Dc~~k~~~~~eL~ivEGDSAggsak~gRdr~~qai~PLrGKilNv~~a~~~~i~~n~Ei~~l~~~lG~~ 484 (803) |+.++|||||+||+++++++|||||||||||+|+|++||||.||||||||||+||||+|+.+||++|+||++|++||||+ T Consensus 1 ~~~~~~p~KL~d~~t~~~~~ctLiltEGDSA~g~~~~grd~~~~gvfpLrGK~lNv~~~~~~~i~~N~Ei~~i~~ilGl~ 80 (692) T 2xcs_B 1 MDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG 80 (692) T ss_dssp --------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSC T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 98678997401017899666689997763550100001687867887537841203369888987579999999997899 Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHH Q ss_conf 77533212356737389985088885328999999999630778748959994383378872671799814578989998 Q gi|254780814|r 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 (803) Q Consensus 485 ~g~~~~~~~~lrY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll 564 (803) +|++ ||+++|||||||||||||+|||||++|||||||+|||+|+++||||+++|| T Consensus 81 ~~~~-yd~~~lRYg~i~imtDqD~DG~hIkgLlin~f~~~~p~L~~~g~~~~~~tP------------------------ 135 (692) T 2xcs_B 81 IGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP------------------------ 135 (692) T ss_dssp CGGG-CCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCC------------------------ T ss_pred CCCC-CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHCCEEEEEECC------------------------ T ss_conf 8997-776667768589998799883079999999999868897852956899897------------------------ Q ss_pred HHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 50011000014577654354689999999999999998643445799999887421135112357789999999988765 Q gi|254780814|r 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 (803) Q Consensus 565 ~~gl~~~~l~~~~~~~~l~ge~L~~li~~~~~~~~~l~~l~~~~~~~lle~l~~~~~l~~~~d~~~~~~~~~~l~~~l~~ 644 (803) T Consensus 136 -------------------------------------------------------------------------------- 135 (692) T 2xcs_B 136 -------------------------------------------------------------------------------- 135 (692) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHHHCCCCEECCCCCCCEEEEEEECCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHH Q ss_conf 31000011002445670599999518530266466774164278999988887751145502765582587399899999 Q gi|254780814|r 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 (803) Q Consensus 645 ~~~~~~~~~~~~~~~~~i~~~~~~~Gv~~~~~l~~~~~~s~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~i~s~~el~~ 724 (803) T Consensus 136 -------------------------------------------------------------------------------- 135 (692) T 2xcs_B 136 -------------------------------------------------------------------------------- 135 (692) T ss_dssp -------------------------------------------------------------------------------- T ss_pred -------------------------------------------------------------------------------- T ss_conf -------------------------------------------------------------------------------- Q ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCHHHCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC Q ss_conf 999863067628603777788955722303896134021236798898887865641899876289988524412 Q gi|254780814|r 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 (803) Q Consensus 725 ~i~~~gkKG~sIQRYKGLGEMNPeQLWETTMDP~tRtLLqV~IeDa~~Ad~iF~~LMGD~VEPRReFIe~NAL~v 799 (803) |||||||||+|.|+|+|||||++|.+.+|++.|+.+|++.|..|||+.+++||+|+.++|... T Consensus 136 ------------~~~k~~~~~~~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~ 198 (692) T 2xcs_B 136 ------------TGYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA 198 (692) T ss_dssp ------------SSCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCC T ss_pred ------------EEEECCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHH T ss_conf ------------534416657878999870485653589999467652789999983754236676654223011 No 14 >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Probab=100.00 E-value=0 Score=542.31 Aligned_cols=200 Identities=44% Similarity=0.767 Sum_probs=191.1 Q ss_pred CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 54200045871543279963254456567555788686077975799983898399997684453640777885001256 Q gi|254780814|r 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99 (803) Q Consensus 20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i 99 (803) |||||||||||||||| |||||+||||||||||+++|||+.|.|+++.||||||+||||||||++||++++|+||+| T Consensus 1 glE~Vr~RPgMYiGs~----gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~sitV~d~GrGIPv~~h~~~~~~~~e~i 76 (201) T 3fv5_A 1 GLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELI 76 (201) T ss_dssp CCHHHHHCGGGTSCTT----STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHH T ss_pred CCHHHHCCCCCEECCC----CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCCEEEEECCCCEEEEECCCCCCCEEEEE T ss_conf 9567621897268998----877078688881354875489837999991898099999789646858677897145999 Q ss_pred EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCC-CCCCEEEEEEEC Q ss_conf 4250113232898604831167520377863264499999978959999988983646313873277-888708999877 Q gi|254780814|r 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPS 178 (803) Q Consensus 100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~-~~~GT~I~F~PD 178 (803) ||+||||||||+++|++||||||||+|||||||++|+|+|+|+|++|+|+|++|++..+++.++.+. +++||+|+|+|| T Consensus 77 ~t~l~ag~~fd~~~~k~sgG~~GvG~~~vNalS~~~~v~v~r~g~~~~q~f~~g~~~~~~~~i~~~~~~~~gT~I~F~PD 156 (201) T 3fv5_A 77 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 156 (201) T ss_dssp HHCC---------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEEC T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEEEECC T ss_conf 99970357678876411377576052344765161699994189899999839930676348741467898499999788 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECC Q ss_conf 88854210008999999997311464169999963586421010012 Q gi|254780814|r 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 (803) Q Consensus 179 ~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~ 225 (803) +++|++..|++++|.+|++++|||||||+|+|+|||.++ +.+||| T Consensus 157 ~~iF~~~~~~~d~l~~rl~~~A~L~~Gl~i~~~Der~~~--~~~f~y 201 (201) T 3fv5_A 157 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCY 201 (201) T ss_dssp GGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTE--EEEECC T ss_pred HHHCCCCEECHHHHHHHHHHHHCCCCCCEEEEEECCCCC--EEEEEC T ss_conf 432375589799999999999604799789999847896--888889 No 15 >3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A* Probab=100.00 E-value=0 Score=521.27 Aligned_cols=202 Identities=61% Similarity=0.944 Sum_probs=192.0 Q ss_pred CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 54200045871543279963254456567555788686077975799983898399997684453640777885001256 Q gi|254780814|r 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99 (803) Q Consensus 20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i 99 (803) ||||||||||||||||+..+|||||+|||||||+||+++|+|+.|.|+++.||+|||+||||||||++||++++|+||+| T Consensus 1 glEhVr~RP~mYiGs~~~~~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg~isV~ddG~GIPv~~h~~~~~~~~eli 80 (203) T 3g7e_A 1 GLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVI 80 (203) T ss_dssp CHHHHHHSGGGTTCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSCCTTTCCCHHHHH T ss_pred CCHHHHCCCCCEECCCCCCCCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE T ss_conf 95567408988881378887274899988883445631599976899996799799998997745644576698220689 Q ss_pred EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEEECH Q ss_conf 42501132328986048311675203778632644999999789599999889836463138732778887089998778 Q gi|254780814|r 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 (803) Q Consensus 100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~ 179 (803) ||+||||+|||+++|++|||+||||+|||||||+||+|+++|+|+.|.|+|++|++..|++.++++ +++||+|+|+||+ T Consensus 81 f~~l~tg~nyd~~~~~~~gG~nG~G~kl~N~~S~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~-~~~gT~V~F~PD~ 159 (203) T 3g7e_A 81 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET-EKTGTMVRFWPSL 159 (203) T ss_dssp HHSTTCCSEECTTCCEESCCCCSSCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEECT T ss_pred EEEEEECCCCCCCCCEECCCCCCCCCEEEEEEEEEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCEEEEEEECC T ss_conf 989840477888861311675786728989862189999998999999998499298882352576-8998899999793 Q ss_pred HHHHH-HHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEC Q ss_conf 88542-1000899999999731146416999996358642101001 Q gi|254780814|r 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 (803) Q Consensus 180 ~iF~~-~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~ 224 (803) ++|.. ..|++++|.+|++++|||||||+|+|+|||.+ ++..|| T Consensus 160 ~~F~~~~~~~~~~l~~r~~~~A~l~~gl~v~~nder~~--~e~~fh 203 (203) T 3g7e_A 160 ETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG--KEDHFH 203 (203) T ss_dssp TTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC--CEEEEC T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC--CCEEEC T ss_conf 10267541479999999999813589858999964789--733529 No 16 >3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A* Probab=100.00 E-value=0 Score=479.10 Aligned_cols=182 Identities=47% Similarity=0.801 Sum_probs=172.0 Q ss_pred CCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 54200045871543279963254456567555788686077975799983898399997684453640777885001256 Q gi|254780814|r 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99 (803) Q Consensus 20 gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i 99 (803) ||||||||||||||||+ .+|||||+|||||||||||++|||+.|.|++++||||||+||||||||++||++++|++|+| T Consensus 1 glE~Vr~RPgMYiGst~-~~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~si~V~D~GRGIPvd~h~~~~~~~~e~i 79 (184) T 3g75_A 1 GLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVI 79 (184) T ss_dssp CTTTTTTCHHHHTSCSS-HHHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGCEEEEECSSCCCCCBCTTTSCBHHHHH T ss_pred CCHHHHHCCCCEECCCC-CCCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHEE T ss_conf 95677208997766699-85222331011135665875597754599996899699999357751110245797513188 Q ss_pred EEEECCCCCCCCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEEECH Q ss_conf 42501132328986048311675203778632644999999789599999889836463138732778887089998778 Q gi|254780814|r 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 (803) Q Consensus 100 ~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~ 179 (803) || +|||||||+||+|+|+|||+.|.|+|++|++..+++.++++ +++||+|+|+||+ T Consensus 80 ~t-----------------------~svvNALS~~l~v~v~rdgk~~~q~f~~G~~~~~l~~~~~~-~~~GT~I~F~PD~ 135 (184) T 3g75_A 80 LT-----------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTT-DKTGTVIRFKADG 135 (184) T ss_dssp HT-----------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC-SCCEEEEEEEECT T ss_pred EE-----------------------EEEEEECCCEEEEEEEECCEEEEEEECCCEECCCCEECCCC-CCCCCEEEEECCC T ss_conf 76-----------------------89947168849999998999999996798799873365776-7997599998990 Q ss_pred HHHH-HHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCEEEECCC Q ss_conf 8854-2100089999999973114641699999635864-210100126 Q gi|254780814|r 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-PREITMFYK 226 (803) Q Consensus 180 ~iF~-~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~-~~~~~f~~~ 226 (803) ++|. ...|++++|.+|++++|||||||+|.|+|+|.+. .++.+|||+ T Consensus 136 ~iF~~~~~~~~~~l~~rl~~~A~Ln~Gl~i~l~d~r~~~~~~~~~f~ye 184 (184) T 3g75_A 136 EIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYE 184 (184) T ss_dssp TTSCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTEEEEEEECCC T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEECC T ss_conf 3135665258999999999973168987999997268988651777539 No 17 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Probab=99.54 E-value=5.9e-13 Score=118.01 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=125.0 Q ss_pred EECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECC--CC----EEEEEECCCCCCCCCC Q ss_conf 23135420004587154327996325445656755578868-60779757999838--98----3999976844536407 Q gi|254780814|r 16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES-LEGYADIITVTLNM--DG----SCTVSDNGRGIPTDLH 88 (803) Q Consensus 16 ~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~-~~g~~~~I~V~i~~--dg----sisV~dnGrGIPv~~h 88 (803) +.++-.|--.+-..| .|-.+..+.|++.|.|+||||+|.. -+|.+..|.|+|.. ++ .|+|.|||.|||.+.. T Consensus 9 ~~~s~~eff~~N~~i-~gf~~~~~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~~e~i 87 (471) T 1mu5_A 9 TSLSPAEFFKRNPEL-AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV 87 (471) T ss_dssp --CCHHHHHHHCGGG-TTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGH T ss_pred HHCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCHHHH T ss_conf 645999998863564-2778702169999999999999978855998716999997368886899999962899999999 Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCC-----EEEEEEEECC--EEEEEEEEC----CEECC Q ss_conf 778850012564250113232898604831167520377863264-----4999999789--599999889----83646 Q gi|254780814|r 89 KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS-----WLKLRIKREG--NIYEMSFIN----GILDN 157 (803) Q Consensus 89 ~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS~-----~~~v~v~rdg--k~~~q~f~~----g~~~~ 157 (803) ..||+.+++|+||... -++|..|+|++.+..+|. .++|+....+ +.|...+.- +.+.. T Consensus 88 --------~~iF~r~~~~sk~~~~---~~~G~~GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~~~~~~l~id~~kn~p~i 156 (471) T 1mu5_A 88 --------PNAFGRVLYSSKYVNR---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPII 156 (471) T ss_dssp --------HHHHHCCCCC-CCCCS---CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEE T ss_pred --------HHHHHHHCCCCCCCCC---CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCC T ss_conf --------9986502625676650---36896213489999999973794699999448997379987322135677656 Q ss_pred C-CEEECCCCCCCCEEEEEEECHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEC Q ss_conf 3-1387327788870899987788854210008999999997311464169999963 Q gi|254780814|r 158 P-LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 (803) Q Consensus 158 ~-l~~~~~~~~~~GT~I~F~PD~~iF~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~De 213 (803) . ...+......+||.|++..+...... ...+...++..|..||-++|+|.+. T Consensus 157 ~~~~~~~~~~~~~Gt~v~l~~~~~~~~~----~~~i~eyl~rtAi~nPha~i~~~~p 209 (471) T 1mu5_A 157 VERGSVENTRGFHGTSVAISIPGDWPKA----KSRIYEYIKRTYIITPYAEFIFKDP 209 (471) T ss_dssp EEEEEEECCTTCCEEEEEEEEECCHHHH----HHHHHHHHHHHHHHCTTCEEEEECT T ss_pred CCCEEEECCCCCCCEEEEEEECCHHHHH----HHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 7870660576667716998503017777----7789999988764088718999869 No 18 >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Probab=99.52 E-value=4.8e-12 Score=110.97 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=112.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCC Q ss_conf 63254456567555788686077975799983898--399997684453640777885001256425011323---2898 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK---FNQK 112 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~k---fd~~ 112 (803) ...+...|.|+|+||+| || |+.|.|.|...| +|.|.|||.|||.+-- ++++.. |+-+| |+|- T Consensus 23 I~~p~svvkELveNsiD---A~-At~I~v~i~~~g~~~i~V~DnG~Gi~~~d~--------~~~~~r-~~TSK~~~~~dl 89 (367) T 3h4l_A 23 ITDLTTAVKELVDNSID---AN-ANQIEIIFKDYGLESIECSDNGDGIDPSNY--------EFLALK-HYTSKIAKFQDV 89 (367) T ss_dssp CCSHHHHHHHHHHHHHH---TT-CSEEEEEEETTTTSEEEEEECSCCCCGGGT--------TTTTCC-EEC--------- T ss_pred ECCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHHHH-CCCCCCCCCCCC T ss_conf 46889999999977764---89-598999998798469999989998897899--------876542-058755532233 Q ss_pred CCEEECCCCCCEEEEEEECCCEEEEEEE-ECCEEEEEEEECCEECCCCEEECCCCCCCCEEEEEE----ECHHH---H-H Q ss_conf 6048311675203778632644999999-789599999889836463138732778887089998----77888---5-4 Q gi|254780814|r 113 SYKVSGGLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL----PSSDI---F-S 183 (803) Q Consensus 113 ~yk~sgGlhGvG~s~vNalS~~~~v~v~-rdgk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~----PD~~i---F-~ 183 (803) ..--|.|..|.+.+...+.|+ +++..+ ++...+...|..+......+ .+....||+|+.. .-|.+ | . T Consensus 90 ~~~~t~GfRGeAL~sI~~vs~-l~I~S~~~~~~~~~~~~~~~g~~~~~~---~~~~~~GTtV~V~dLF~n~PvRrk~~~k 165 (367) T 3h4l_A 90 AKVQTLGFRGEALSSLCGIAK-LSVITTTSPPKADKLEYDMVGHITSKT---TTSRNKGTTVLVSQLFHNLPVRQKEFSK 165 (367) T ss_dssp CCCCEEEETTHHHHHHHHSSE-EEEEEESSTTCEEEEEECTTCCEEEEE---EECCSSEEEEEEESTTTTCHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHHHCC-EEEEEEECCCCCCEEEEEECCCCCCCC---CCCCCCCCCEEEECCCCCCHHHHHHHHC T ss_conf 112466644078998875256-479985058763349998337522235---4345666634632030587677887650 Q ss_pred HHHCCHHHHHHHHHHHHCCCCEEEEEEEECC Q ss_conf 2100089999999973114641699999635 Q gi|254780814|r 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 (803) Q Consensus 184 ~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der 214 (803) ...-.+..+.+.++.+|..+|++++.+.+.. T Consensus 166 ~~~~e~~~I~~~v~~yAL~~p~V~F~l~~~~ 196 (367) T 3h4l_A 166 TFKRQFTKCLTVIQGYAIINAAIKFSVWNIT 196 (367) T ss_dssp THHHHHHHHHHHHHHHHHHCTTCEEEEEEEC T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 1026777778898644324797069998633 No 19 >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Probab=99.36 E-value=1.1e-11 Score=108.07 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=128.9 Q ss_pred CCCCCCCCCCCHHHCEECCCCCHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEE Q ss_conf 987642236786551231354200045871543279963254456567555788686077975799983898--399997 Q gi|254780814|r 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSD 78 (803) Q Consensus 1 m~~~~~~~~Y~~~~i~~L~gle~vrkRP~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~d 78 (803) |-.......=.+.+|+.|..--.-+.+-|-.| +-+...|.|+|+||+| || |+.|.|.++.+| +|+|.| T Consensus 1 ~~~~~~~~~~~~~~I~~L~~~~~~~i~s~~vi------~~~~svvkELieNSiD---A~-At~I~I~v~~~g~~~I~V~D 70 (365) T 1h7s_A 1 MERAESSSTEPAKAIKPIDRKSVHQICSGQVV------LSLSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSD 70 (365) T ss_dssp ----------------------------CEEE------CCHHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEE T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHCCCCEE------CCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEE T ss_conf 99888899999877761998999882897734------6888999999977872---89-88899999879843899998 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCCCCEEECCCCCCEEEEEEECCCEEEEEEEE-CCE-EEEEEEECC Q ss_conf 684453640777885001256425011323---289860483116752037786326449999997-895-999998898 Q gi|254780814|r 79 NGRGIPTDLHKEEGISAAEVIMTRLHAGGK---FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR-EGN-IYEMSFING 153 (803) Q Consensus 79 nGrGIPv~~h~~~~~~~~E~i~t~L~ag~k---fd~~~yk~sgGlhGvG~s~vNalS~~~~v~v~r-dgk-~~~q~f~~g 153 (803) ||.|||-+-- +++... |+.+| |++-....|.|.+|.+.+...+.|. +++.+++ ++. .|...|.++ T Consensus 71 nG~Gi~~~dl--------~~~~~~-~~tsk~~~~~d~~~~~t~GfRGeaL~si~~~s~-~~i~S~~~~~~~~~~~~~~~~ 140 (365) T 1h7s_A 71 NGCGVEEENF--------EGLTLK-HHTSKIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHN 140 (365) T ss_dssp CSCCCCGGGS--------GGGGC-----------CCTTCSEEESSSSSHHHHHHHHSE-EEEEEECTTCSSCEEEEECTT T ss_pred CCCCCCHHHH--------HHHHHH-HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC-EEEEEECCCCCHHEEEEEECC T ss_conf 9987598998--------645420-236776623365334557742278888886245-158884389743349998246 Q ss_pred EECCCCEEECCCCCCCCEEEEEE----ECHH---HH-HHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCC Q ss_conf 36463138732778887089998----7788---85-421000899999999731146416999996358 Q gi|254780814|r 154 ILDNPLVVTGSAGNDTGTEVTFL----PSSD---IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215 (803) Q Consensus 154 ~~~~~l~~~~~~~~~~GT~I~F~----PD~~---iF-~~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~ 215 (803) .... ..++.+...||+|+.. .-|. .| ......+..+.+.++.+|..+|+++|.|.+... T Consensus 141 ~~~~---~~~~~~~~~GTtV~v~~lF~n~PvRrk~~~k~~~~e~~~i~~~v~~~Al~~p~V~f~l~~~~~ 207 (365) T 1h7s_A 141 GKII---QKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLG 207 (365) T ss_dssp SCEE---EEEECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECT T ss_pred CCCC---CCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 6532---235644678758999613357722433213520589999999876552227964799997367 No 20 >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Probab=99.35 E-value=1.7e-10 Score=98.99 Aligned_cols=259 Identities=15% Similarity=0.185 Sum_probs=147.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC---CCC Q ss_conf 3254456567555788686077975799983898--39999768445364077788500125642501132328---986 Q gi|254780814|r 39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN---QKS 113 (803) Q Consensus 39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd---~~~ 113 (803) ..+...|.|+|+||+| || |+.|.|.|+.+| +|.|.|||.|||-+-.+ + .+.-|+-+|.. +-. T Consensus 27 ~~~~s~vkELieNsiD---A~-At~I~i~i~~~g~~~I~V~DnG~Gi~~~dl~--------~-~~~~~~tSK~~~~~dl~ 93 (348) T 3na3_A 27 QRPANAIKEMIENCLD---AK-STSIQVIVKEGGLKLIQIQDNGTGIRKEDLD--------I-VCERFTTSKLQSFEDLA 93 (348) T ss_dssp CSHHHHHHHHHHHHHH---TT-CSEEEEEEEGGGTSEEEEEECSCCCCGGGGG--------T-TTSTTCCSSCCCC---- T ss_pred CCHHHHHHHHHHHHHC---CC-CCEEEEEEECCCEEEEEEEECCCCCCHHHHH--------H-HHHCCCCCCCCCHHHHH T ss_conf 5889999999865544---89-9889999998987899999899888989999--------9-97524576778755422 Q ss_pred CEEECCCCCCEEEEEEECCCEEEEEEEEC--CEEEEEEEECCEECCCCEEECCCCCCCCEEEEE------EECHHHH-HH Q ss_conf 04831167520377863264499999978--959999988983646313873277888708999------8778885-42 Q gi|254780814|r 114 YKVSGGLHGVGVSVVNALSSWLKLRIKRE--GNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF------LPSSDIF-SV 184 (803) Q Consensus 114 yk~sgGlhGvG~s~vNalS~~~~v~v~rd--gk~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F------~PD~~iF-~~ 184 (803) -.-|.|..|.+.+....+|. +++..+.. ...|...|.+|....+.... ....||+|+. .|=...| .. T Consensus 94 ~~~t~GfRGeAL~sI~~~s~-~~I~Sr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~GTtV~V~nLF~n~PvRrk~lk~ 169 (348) T 3na3_A 94 SISTYGFRGEALASISHVAH-VTITTKTADGKCAYRASYSDGKLKAPPKPC---AGNQGTQITVEDLFYNIATRRKALKN 169 (348) T ss_dssp -----CCTTCHHHHHHHSSE-EEEEEECTTCSSEEEEEEETTEESSCCEEE---CCCSEEEEEEESTTTTCHHHHHTSCC T ss_pred HCCCCCCCHHHHHHHHHHCC-EEEEEECCCCCCCCEEEEECCCCEEECCCC---CCCCCCEEEECCCCCCCCHHHHHCCC T ss_conf 10266632899999985177-499961256764617998068623404423---46776579870022675255531258 Q ss_pred HHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEC--CCCCCHHHHHHHCCCCCCCCCC--CEEEEEEEEEEEEE Q ss_conf 1000899999999731146416999996358642101001--2688357765300356556885--20364200369997 Q gi|254780814|r 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF--YKGGIEAFVSYLDRHKKPLMQS--PIRIQGSRDNISID 260 (803) Q Consensus 185 ~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~--~~~Gi~~fv~~l~~~~~~~~~~--~i~~~~~~~~~~ve 260 (803) .......+.+.+..+|..+|.+.+.|.... +. ...+. ....+.+-+..+-+.. +... ++.+..+...+.++ T Consensus 170 ~~~e~~~i~~~i~~~AL~~p~I~F~l~~~g--k~-~~~~~~~~~~~~~~~i~~v~G~~--~~~~~~~~~~~~~~~~~~i~ 244 (348) T 3na3_A 170 PSEEYGKILEVVGRYSVHNAGISFSVKKQG--ET-VADVRTLPNASTVDNIRSIFGNA--VSRELIEIGCEDKTLAFKMN 244 (348) T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEETT--CS-SCSEECCTTCCHHHHHHHHHCHH--HHTTEEEEEEEEGGGTEEEE T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECC--EE-EEEEECCCCCCHHHHHHHHHCHH--HHHHCCCCCCCCCCCCEEEE T ss_conf 189999999999998625999649999999--99-99986599978999999874736--56510343333466531230 Q ss_pred EEEEECC--CCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCC Q ss_conf 3345317--75412122224621666772103568889999999998624200012357613430572156665213763 Q gi|254780814|r 261 LAMRWND--GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 (803) Q Consensus 261 val~~~~--~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~nP~ 338 (803) ..+.-.+ .-....+-|||+-+-...+ |.++|++-.... +.+.. .=.+++++.+|.-. T Consensus 245 g~is~p~~~~~~~~q~~fVN~R~V~~~~---------l~~aI~~~y~~~-l~~~~-----------~P~~vL~i~~p~~~ 303 (348) T 3na3_A 245 GYISNANYSVKKCIFLLFINHRLVESTS---------LRKAIETVYAAY-LPKNT-----------HPFLYLSLEISPQN 303 (348) T ss_dssp EEEECSSCCBSSCEEEEEETTEECCCTT---------HHHHHHHHHHTT-SCTTC-----------BCEEEEEEECC--- T ss_pred CCCCCCCCCCCCCCEEEEECCCEECCHH---------HHHHHHHHHHHH-CCCCC-----------CEEEEEEEEECCHH T ss_conf 3426865466776179999187325679---------999999999975-75898-----------62999999947133 Q ss_pred CC Q ss_conf 35 Q gi|254780814|r 339 FS 340 (803) Q Consensus 339 F~ 340 (803) .| T Consensus 304 iD 305 (348) T 3na3_A 304 VD 305 (348) T ss_dssp -- T ss_pred EE T ss_conf 77 No 21 >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Probab=98.94 E-value=2.6e-08 Score=81.98 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=141.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC-- Q ss_conf 63254456567555788686077975799983898--39999768445364077788500125642501132328986-- Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-- 113 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~-- 113 (803) .+.+...|-|+|+||+|- .|+.|.|.++..| .|.|.|||.|||.+-. .+ ++.-|+-+|...-+ T Consensus 22 I~~~~~~vkELveNSiDA----~At~I~I~v~~~g~~~I~V~DnG~GI~~~dl--------~~-~~~r~~TSK~~~~~dl 88 (333) T 1b63_A 22 VERPASVVKELVENSLDA----GATRIDIDIERGGAKLIRIRDNGCGIKKDEL--------AL-ALARHATSKIASLDDL 88 (333) T ss_dssp CSSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGH--------HH-HHSTTCCSSCCSHHHH T ss_pred ECCHHHHHHHHHHHHCCC----CCCEEEEEEECCCEEEEEEEECCCCCCHHHH--------HH-HHHHHCCCCCCCHHHH T ss_conf 547899999998630278----9898999998797659999989967687688--------88-7664105778997885 Q ss_pred -CEEECCCCCCEEEEEEECCCEEEEEEEECC--EEEEEEEECCEECCCCEEECCCCCCCCEEEEEE----ECHHHHH--- Q ss_conf -048311675203778632644999999789--599999889836463138732778887089998----7788854--- Q gi|254780814|r 114 -YKVSGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL----PSSDIFS--- 183 (803) Q Consensus 114 -yk~sgGlhGvG~s~vNalS~~~~v~v~rdg--k~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~----PD~~iF~--- 183 (803) --.|=|-.|-..+....+| .+++++++.+ .-|...+..+....+. .++....||+|+-. .-|.+-. T Consensus 89 ~~~~t~GFRGEAL~Si~~vs-~l~I~sr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~GTtV~V~~LF~n~PvRrk~l~ 164 (333) T 1b63_A 89 EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTV---KPAAHPVGTTLEVLDLFYNTPARRKFLR 164 (333) T ss_dssp HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEE---EEECCCSEEEEEEESTTTTCHHHHHTCC T ss_pred HHHHHCCCCHHHHHHHHHHC-CCEEEEECCCCCCEEEEEEECCCCCCCE---EECCCCCCCEEEECHHHCCCHHHHHHCC T ss_conf 56652275507999999850-8544334289884499999547764440---2536899968996043273857775258 Q ss_pred HHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCHHHHH---HHCCCCCCCCCCCEEEEEEEEEEEEE Q ss_conf 210008999999997311464169999963586421010012688357765---30035655688520364200369997 Q gi|254780814|r 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS---YLDRHKKPLMQSPIRIQGSRDNISID 260 (803) Q Consensus 184 ~~~~~~d~l~~R~~~~A~Ln~gl~i~l~Der~~~~~~~~f~~~~Gi~~fv~---~l~~~~~~~~~~~i~~~~~~~~~~ve 260 (803) ...-.+..+.+.+...|..+|.+.+.+..+. +. ...+....+..++.. .+-.. ......+.+..+.+.+.++ T Consensus 165 ~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~~--k~-~~~~~~~~~~~~~~~~i~~v~g~--~~~~~~~~~~~~~~~~~i~ 239 (333) T 1b63_A 165 TEKTEFNHIDEIIRRIALARFDVTINLSHNG--KI-VRQYRAVPEGGQKERRLGAICGT--AFLEQALAIEWQHGDLTLR 239 (333) T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCEEEEEETT--EE-EEEECCCCTTCCTHHHHHHHHCH--HHHHHEEEEEEEETTEEEE T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEEEEECC--CC-EEEEECCCCCCCHHHHHHHHCCH--HHHHHEEEEEECCCCCEEE T ss_conf 8488899999999873326884799999788--31-15663368985288777653120--4333124432002552253 Q ss_pred EEEEEC----CCCCCEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEEEECCC Q ss_conf 334531----7754121222246216667721035688899999999986242000123576134305721566652137 Q gi|254780814|r 261 LAMRWN----DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 (803) Q Consensus 261 val~~~----~~~~e~i~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Diregl~~visvki~n 336 (803) .-+.-. -......+-|||+-+-.. ..|.++|++-.... +.+.. .=.+++++.+|. T Consensus 240 G~is~p~~~~~~~~~~q~~fVN~R~v~~---------~~l~~aI~~~y~~~-~~~~~-----------~P~~vL~i~~p~ 298 (333) T 1b63_A 240 GWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACEDK-LGADQ-----------QPAFVLYLEIDP 298 (333) T ss_dssp EEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHHH-SSSCC-----------CCCEEEEEECCG T ss_pred EEECCCCCCCCCCCCEEEEEECCCCCCC---------HHHHHHHHHHHHHH-CCCCC-----------CEEEEEEEEECC T ss_conf 3543864232434653699966851146---------89999999998854-65888-----------808999999371 Q ss_pred CCCC Q ss_conf 6335 Q gi|254780814|r 337 PRFS 340 (803) Q Consensus 337 P~F~ 340 (803) -..| T Consensus 299 ~~iD 302 (333) T 1b63_A 299 HQVD 302 (333) T ss_dssp GGEE T ss_pred HHEE T ss_conf 4264 No 22 >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Probab=98.81 E-value=6.9e-09 Score=86.45 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=82.0 Q ss_pred CEECCCCCHHCCCCCCEEC-CCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEEEEEECCC---C---EEEEEECCCCCCCC Q ss_conf 1231354200045871543-2799632544565675557886-8607797579998389---8---39999768445364 Q gi|254780814|r 15 IQILKGLDAVKKRPSMYIG-DTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNMD---G---SCTVSDNGRGIPTD 86 (803) Q Consensus 15 i~~L~gle~vrkRP~mYiG-~t~~~~Gl~hlv~EiidNsvDe-~~~g~~~~I~V~i~~d---g---sisV~dnGrGIPv~ 86 (803) ++.++..|=-.+-|.+ +| ++ ..++|++.|.|+|+||+|. +-.++|..|.|+|+.+ + +|+|.|||.|||.+ T Consensus 7 ~~~~~~~~f~~~~~~~-~~~~~-~~~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms~e 84 (530) T 2zbk_B 7 FTSLSPAEFFKRNPEL-AGFPN-PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530) T ss_dssp -------CGGGTCCGG-GTCSS-HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG T ss_pred HHHCCHHHHHHHHHHH-HCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCHH T ss_conf 3435989997862787-45785-465699999999999998887258988359999983489957899999628989999 Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECC-----CEEEEEEEECC Q ss_conf 0777885001256425011323289860483116752037786326-----44999999789 Q gi|254780814|r 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALS-----SWLKLRIKREG 143 (803) Q Consensus 87 ~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sgGlhGvG~s~vNalS-----~~~~v~v~rdg 143 (803) -. +.+|+..+++++.+...| .|.+|+|.+.+..|| ....|++...+ T Consensus 85 ~l--------~~~f~~f~~s~~~~~~~~---~G~~GlGl~~~~~~s~~~~g~~v~v~S~~~~ 135 (530) T 2zbk_B 85 EV--------PNAFGRVLYSSKYVNRQT---RGMYGLGVKAAVLYSQMHQDKPIEIETSPVN 135 (530) T ss_dssp GS--------HHHHTSCCCSCCCCCSCC---SCSSSSHHHHHHHHHHHHCCCCEEEEEECTT T ss_pred HH--------HHHHHHHCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 99--------998642034776453244---7865445899999999805975999994589 No 23 >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A* Probab=97.39 E-value=0.00097 Score=46.47 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=76.7 Q ss_pred HHHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEEC-CC Q ss_conf 656755578868-------60-------7797579998389-8399997684453640777885001256--42501-13 Q gi|254780814|r 45 IYEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTRLH-AG 106 (803) Q Consensus 45 v~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~L~-ag 106 (803) +=|+|.||+|-. +. ..--.|.|..+++ ..++|.|||-|+--+ |++ |++.- +| T Consensus 37 LRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~----------el~~~lgtIa~Sg 106 (236) T 2gqp_A 37 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTRE----------ELVKNLGTIAKSG 106 (236) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHH----------HHHHHHHCC---- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHHHCC T ss_conf 999987899999999999664941004677716999765888889998455221599----------9988767666214 Q ss_pred CC-CCCCCC-------EE--ECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEE Q ss_conf 23-289860-------48--3116752037786326449999997895-9999988983646313873277888708999 Q gi|254780814|r 107 GK-FNQKSY-------KV--SGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 (803) Q Consensus 107 ~k-fd~~~y-------k~--sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F 175 (803) .+ |...-. .- --|+-|||.--+=..+.+.+|+.++.+. .|. -+++|.....+.........+||+|+. T Consensus 107 t~~f~~~~~~~~~~~~~~~~lIGqFGVGFyS~FmVAd~V~V~sr~~~~~~~~-W~s~g~~~~~i~~~~~~~~~~GT~I~L 185 (236) T 2gqp_A 107 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHI-WESDSNEFSVIADPRGNTLGRGTTITL 185 (236) T ss_dssp -----------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEE-EEESSSCEEEEECTTCSCSSSEEEEEE T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEEEEEECEEEEEEECCCCCCCE-EEECCCCCEEEECCCCCCCCCCEEEEE T ss_conf 2888876553200345311135325723057673305599998216787745-994588717973135777899849999 Q ss_pred EECHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 8778885421000899999999731 Q gi|254780814|r 176 LPSSDIFSVQDFNYDTLQHRLRELS 200 (803) Q Consensus 176 ~PD~~iF~~~~~~~d~l~~R~~~~A 200 (803) .+-++-= .-++...|...++..+ T Consensus 186 ~lk~~~~--e~l~~~~l~~li~kys 208 (236) T 2gqp_A 186 VLKEEAS--DYLELDTIKNLVKKYS 208 (236) T ss_dssp EECGGGG--GGGCHHHHHHHHHHHH T ss_pred EECCCCH--HHCCHHHHHHHHHHHH T ss_conf 9888774--5579999999999986 No 24 >1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ... Probab=97.31 E-value=0.0007 Score=47.57 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=79.4 Q ss_pred HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC- Q ss_conf 56755578868-------60-------7797579998389-83999976844536407778850012564250-11323- Q gi|254780814|r 46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK- 108 (803) Q Consensus 46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k- 108 (803) -|+|.||+|-. +. +.--.|.|..+.+ +.++|.|||-|+--+.-.. . +++. ++|.+ T Consensus 46 RELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~~-------~-LgtIa~Sgt~~ 117 (236) T 1uyl_A 46 RELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLIN-------N-LGTIAKSGTKA 117 (236) T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT-------G-GGSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH-------H-HHHHHHCCCHH T ss_conf 999867999999999997459400156777379999869887899996897757899998-------7-22343036199 Q ss_pred C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEECHHHHH Q ss_conf 2----89860483116752037786326449999997895-999998898364631387327788870899987788854 Q gi|254780814|r 109 F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 (803) Q Consensus 109 f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~ 183 (803) | ++....---|..|||.--+=..+.+.+|..++.+. .|.-. ..|...............+||+|+-.+..+- T Consensus 118 f~~~~~~~~d~~~IGqFGVGFyS~FmVad~V~V~Tk~~~~~~~~w~-s~g~g~~~i~~~~~~~~~~GT~I~L~lk~d~-- 194 (236) T 1uyl_A 118 FMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWE-SSAGGSFTVRTDTGEPMGRGTKVILHLKEDQ-- 194 (236) T ss_dssp HHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEE-ECSTTEEEEEECCSSCCSSEEEEEEEECGGG-- T ss_pred HHHHHHHCCCCCHHHHCCCCEEEECCCCCEEEEEECCCCCCCCEEE-ECCCCCEEEEEECCCCCCCCCEEEEEECCCH-- T ss_conf 9987550156122211152135402346768999746987643078-1378873798504555676617999847776-- Q ss_pred HHHC-CHHHHHHHHHHHH Q ss_conf 2100-0899999999731 Q gi|254780814|r 184 VQDF-NYDTLQHRLRELS 200 (803) Q Consensus 184 ~~~~-~~d~l~~R~~~~A 200 (803) .+| +...|...++..+ T Consensus 195 -~efl~~~~i~~iikkys 211 (236) T 1uyl_A 195 -TEYLEERRIKEIVKKHS 211 (236) T ss_dssp -GGGGSHHHHHHHHHHHC T ss_pred -HHHHCHHHHHHHHHHHH T ss_conf -88719899999999986 No 25 >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Probab=97.29 E-value=0.0015 Score=44.94 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=82.5 Q ss_pred HHHHHHHHHHH--H-----H-----CCC--CEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEE-CCCCC Q ss_conf 56755578868--6-----0-----779--7579998389-839999768445364-07778850012564250-11323 Q gi|254780814|r 46 YEVLDNAIDES--L-----E-----GYA--DIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRL-HAGGK 108 (803) Q Consensus 46 ~EiidNsvDe~--~-----~-----g~~--~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L-~ag~k 108 (803) =|+|.||+|-. + . +.. -.|.|+.+++ ++++|.|||-|+--+ +|.. +++. ++|.+ T Consensus 32 RELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~D~GiGMt~~e~~~~---------lgtIa~Sgt~ 102 (677) T 2cg9_A 32 RELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINN---------LGTIAKSGTK 102 (677) T ss_dssp HHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHGG---------GSSSSSCTTH T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHH---------HHHHHHHHHH T ss_conf 9888629999999998853691211678860699997588898999951888899999998---------7777114259 Q ss_pred -C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEE-CCCCCCCCEEEEEEECHHH Q ss_conf -2----89860483116752037786326449999997895-999998898364631387-3277888708999877888 Q gi|254780814|r 109 -F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDI 181 (803) Q Consensus 109 -f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~-~~~~~~~GT~I~F~PD~~i 181 (803) | ...+..---|.-|||.--+=..+.+.+|.++..+. .|.- +.+|......... ......+||+|+..|..+- T Consensus 103 ~f~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~t~~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~GT~I~L~lk~~~ 181 (677) T 2cg9_A 103 AFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIW-ESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQ 181 (677) T ss_dssp HHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEE-EECSSSEEEEEECCSSCCCSSEEEEEEEECTTG T ss_pred HHHHHHHCCCCCCHHCCCCCCCEEEEEEECEEEEEEECCCCCCCEE-EEECCCCEEEEEECCCCCCCCCEEEEEEECCCH T ss_conf 9999854578601230476101467886163799970688887279-996389707984034556777248999937877 Q ss_pred HHHHHCCHHHHHHHHHHHH-CCCCEEEE Q ss_conf 5421000899999999731-14641699 Q gi|254780814|r 182 FSVQDFNYDTLQHRLRELS-FLNSSVQI 208 (803) Q Consensus 182 F~~~~~~~d~l~~R~~~~A-~Ln~gl~i 208 (803) =+ -++.+.|..-++..+ |+.--+.+ T Consensus 182 ~e--~~~~~~l~~ii~kys~fi~~PI~l 207 (677) T 2cg9_A 182 LE--YLEEKRIKEVIKRHSEFVAYPIQL 207 (677) T ss_dssp GG--GGCHHHHHHHHHHHSTTCSSCEEE T ss_pred HH--HHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 87--750889999999843577766698 No 26 >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Probab=97.20 E-value=0.0022 Score=43.72 Aligned_cols=152 Identities=24% Similarity=0.285 Sum_probs=82.5 Q ss_pred HHHHHHHHHHHH-------H-------HCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEE-ECCC Q ss_conf 656755578868-------6-------07797579998389-8399997684453640777885001256--425-0113 Q gi|254780814|r 45 IYEVLDNAIDES-------L-------EGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTR-LHAG 106 (803) Q Consensus 45 v~EiidNsvDe~-------~-------~g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~-L~ag 106 (803) +-|.|.||+|-. + ++.--.|.|+++++ ++++|.|||-|+--+ |++ +++ -++| T Consensus 32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~----------el~~~lgtIa~Sg 101 (559) T 1y4s_A 32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRD----------EVIDHLGTIAKSG 101 (559) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHH----------HHHHHHSCCSCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHEEHH T ss_conf 888887299999999998614931007898827999973889989999628889999----------9998511325351 Q ss_pred CC-C------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE--EEEEEEE-CCEECCCCEEECCCCCCCCEEEEEE Q ss_conf 23-2------89860483116752037786326449999997895--9999988-9836463138732778887089998 Q gi|254780814|r 107 GK-F------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN--IYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFL 176 (803) Q Consensus 107 ~k-f------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk--~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~ 176 (803) ++ | +...-.---|.-|||.--+=..+...+|.+++-|. ...-.|+ .|.....+.. .....+||+|+.. T Consensus 102 t~~f~~~~~~~~~~~~~~iGqFGvGfyS~FmVa~~V~V~tr~~~~~~~~~~~w~~~g~~~~~~~~--~~~~~~GT~I~L~ 179 (559) T 1y4s_A 102 TKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD--ITKEDRGTEITLH 179 (559) T ss_dssp CCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEE--ECCCSCEEEEEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEECC--CCCCCCCEEEEEE T ss_conf 89999984531255445455321001245544667999972278777743799977986258446--7777787478740 Q ss_pred ECHHHHHHHHCCHHHHHHHHHHHH-CCCCEEEEEE Q ss_conf 778885421000899999999731-1464169999 Q gi|254780814|r 177 PSSDIFSVQDFNYDTLQHRLRELS-FLNSSVQISL 210 (803) Q Consensus 177 PD~~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i~l 210 (803) +-.+-=+ -.+.+.|.+-++..+ |+.--+.+.- T Consensus 180 lk~~~~e--fl~~~~l~~li~kys~fi~~PI~l~~ 212 (559) T 1y4s_A 180 LREGEDE--FLDDWRVRSIISKYSDHIALPVEIEK 212 (559) T ss_dssp ECTTCGG--GSCHHHHHHHHHHHHTTCSSCEEEEE T ss_pred ECCCHHH--HHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 0554676--63178999999860404466637544 No 27 >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Probab=97.17 E-value=0.0011 Score=46.20 Aligned_cols=143 Identities=18% Similarity=0.205 Sum_probs=79.4 Q ss_pred HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC- Q ss_conf 56755578868-------60-------7797579998389-83999976844536407778850012564250-11323- Q gi|254780814|r 46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK- 108 (803) Q Consensus 46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k- 108 (803) -|+|.||+|-. +. +..-.|.|..+.+ ++++|.|||-|+--+.-. --|++. .+|.+ T Consensus 74 RELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~--------~~lgtIa~Sg~~~ 145 (264) T 1yc1_A 74 RELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI--------NNLGTIAKSGTKA 145 (264) T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------HHHHSCTTSCHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHH--------HHCCCHHCCCCHH T ss_conf 88885799999999998653952246798736999876888889999689877799999--------7616500146388 Q ss_pred C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEECHHHHH Q ss_conf 2----89860483116752037786326449999997895-999998898364631387327788870899987788854 Q gi|254780814|r 109 F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 (803) Q Consensus 109 f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD~~iF~ 183 (803) | ......---|.-|||.-.+=..+.+.+|.++..+. .+.-.|..+. .............+||+|+..+..+- T Consensus 146 f~~~~~~~~d~~~IGqFGVGFyS~FMVAdkV~V~Trs~~~~~~~w~s~~~g-~~~~~~~~~~~~~~GT~I~L~Lk~d~-- 222 (264) T 1yc1_A 146 FMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGG-SFTVRTDTGEPMGRGTKVILHLKEDQ-- 222 (264) T ss_dssp HHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTT-EEEEEECCSSCCSSEEEEEEEECGGG-- T ss_pred HHHHHHHCCCCCEECCCCCCEEEECCCCCEEEEEECCCCCCCCEEEEEECC-CEEEEECCCCCCCCCCEEEEEECCCH-- T ss_conf 898754025644000015221220234775799975899864437864068-72799677788999948999968872-- Q ss_pred HHHC-CHHHHHHHHHHHH Q ss_conf 2100-0899999999731 Q gi|254780814|r 184 VQDF-NYDTLQHRLRELS 200 (803) Q Consensus 184 ~~~~-~~d~l~~R~~~~A 200 (803) .+| +.+.|...++..+ T Consensus 223 -~Efle~~rl~~lIkkYS 239 (264) T 1yc1_A 223 -TEYLEERRIKEIVKKHS 239 (264) T ss_dssp -GGGGSHHHHHHHHHHHT T ss_pred -HHHCCHHHHHHHHHHHH T ss_conf -78669989999999876 No 28 >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A Probab=97.09 E-value=0.0014 Score=45.32 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=79.2 Q ss_pred HHHHHHHHHHHH-------H-------HCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC Q ss_conf 656755578868-------6-------07797579998389-83999976844536407778850012564250-11323 Q gi|254780814|r 45 IYEVLDNAIDES-------L-------EGYADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK 108 (803) Q Consensus 45 v~EiidNsvDe~-------~-------~g~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k 108 (803) +-|+|.||+|-. + .+.--.|.|..+++ +.++|.|||-|+--+.-. --|++. .+|.+ T Consensus 31 lRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el~--------~~L~ti~~S~t~ 102 (220) T 2wer_A 31 LREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELI--------NNLGTIAKSGTK 102 (220) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHH--------HHTTTSCCTTHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCEEEEECCCCEECHHHHH--------HHHHHHHCCCCH T ss_conf 878886799999999998645950112578845899853888779996187311389987--------654434033437 Q ss_pred -C----CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEE-CCCCCCCCEEEEEEECHHH Q ss_conf -2----89860483116752037786326449999997895-999998898364631387-3277888708999877888 Q gi|254780814|r 109 -F----NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVT-GSAGNDTGTEVTFLPSSDI 181 (803) Q Consensus 109 -f----d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~-~~~~~~~GT~I~F~PD~~i 181 (803) | ..+...---|.-|||.--+=..+.+.+|..++.+. .|.-++ +|........- ......+||+|+..+..+- T Consensus 103 ~~~~~~~~~~~~~~IGqFGIGfyS~FmVad~V~V~Tr~~~~~~~~W~~-~~dg~~~i~~~~~~~~~~~GT~I~L~lk~d~ 181 (220) T 2wer_A 103 AFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWES-NAGGSFTVTLDEVNERIGRGTILRLFLKDDQ 181 (220) T ss_dssp HHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEE-CSSSEEEEEECSSSCCCSSEEEEEEEECTTC T ss_pred HHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCEEEEE-CCCCCEEEEEECCCCCCCCCEEEEEEECCCH T ss_conf 777530136541303531004778886317699998359986305785-1799769998114776798779999968448 Q ss_pred HHHHHCCHHHHHHHHHHHH Q ss_conf 5421000899999999731 Q gi|254780814|r 182 FSVQDFNYDTLQHRLRELS 200 (803) Q Consensus 182 F~~~~~~~d~l~~R~~~~A 200 (803) -. -++...|.+.++..+ T Consensus 182 ~e--~l~~~~l~~likkys 198 (220) T 2wer_A 182 LE--YLEEKRIKEVIKRHS 198 (220) T ss_dssp GG--GGCHHHHHHHHHHHC T ss_pred HH--HCCHHHHHHHHHHHH T ss_conf 87--659889999999987 No 29 >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Probab=97.06 E-value=0.001 Score=46.21 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=83.6 Q ss_pred HHHHHHHHHHHH-------HH------CC-CCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCCCC Q ss_conf 656755578868-------60------77-97579998389-83999976844536407778850012564250-11323 Q gi|254780814|r 45 IYEVLDNAIDES-------LE------GY-ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL-HAGGK 108 (803) Q Consensus 45 v~EiidNsvDe~-------~~------g~-~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L-~ag~k 108 (803) +=|+|.||+|-. +. +. --.|.|..+++ +.++|.|||-|+--+.- .--|++. .+|.+ T Consensus 33 lRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~el--------~~~LgtIa~Sgt~ 104 (269) T 1qy5_A 33 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKSGTS 104 (269) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHSCCSHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHH--------HHHHHHHHCCCHH T ss_conf 88898769999999999855495223688883588412688748999827633359999--------9887766310179 Q ss_pred -C---------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEECCCCCCCCEEEEEEE Q ss_conf -2---------89860483116752037786326449999997895-999998898364631387327788870899987 Q gi|254780814|r 109 -F---------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 (803) Q Consensus 109 -f---------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~P 177 (803) | +...-.---|+-|||.-.+=..+.+..|..+..+. .|.- .++|.....+.........+||+|+..+ T Consensus 105 ~f~~~~~~~~~~~~~~~~~iGqFGvGfyS~FmVAd~V~V~sr~~~~~~~~W-~s~g~~~~~~~~~~~~~~~rGT~I~L~L 183 (269) T 1qy5_A 105 EFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIW-ESDSNEFSVIADPRGNTLGRGTTITLVL 183 (269) T ss_dssp HHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEE-EECSSCEEEEECTTCSCSSSEEEEEEEE T ss_pred HHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEEEEEEEEEEEECCCCCCCEE-EECCCCCEEEECCCCCCCCCCEEEEEEE T ss_conf 999863421234431022353257421788986248999971488877679-9579971786156677668864999998 Q ss_pred CHHHHHHHHC-CHHHHHHHHHHHH-CCCCEEEEEEEECCC Q ss_conf 7888542100-0899999999731-146416999996358 Q gi|254780814|r 178 SSDIFSVQDF-NYDTLQHRLRELS-FLNSSVQISLIDKRS 215 (803) Q Consensus 178 D~~iF~~~~~-~~d~l~~R~~~~A-~Ln~gl~i~l~Der~ 215 (803) ..+- ..| +...|...++..+ |+. ..|.+.+++. T Consensus 184 k~d~---~efl~~~~l~~ii~kys~fi~--~PI~l~~~k~ 218 (269) T 1qy5_A 184 KEEA---SDYLELDTIKNLVKKYSQFIN--FPIYVWSSKT 218 (269) T ss_dssp CGGG---GGGGSHHHHHHHHHTTCTTCS--SCEEEEEECC T ss_pred CCCH---HHHCCHHHHHHHHHHHHHCCC--CCEEEEEEEC T ss_conf 7714---553699999999998851768--6879944513 No 30 >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Probab=97.05 E-value=0.00063 Score=47.93 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=84.5 Q ss_pred HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEECCCCC- Q ss_conf 56755578868-------60-------7797579998389-839999768445364-0777885001256425011323- Q gi|254780814|r 46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRLHAGGK- 108 (803) Q Consensus 46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L~ag~k- 108 (803) =|+|.||+|-. +. +.--.|.|+++++ ++++|.|||-|+--+ ++. -+=|.-++|++ T Consensus 51 RELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~DnGIGMt~~El~~--------~LgtIa~Sgt~~ 122 (666) T 2o1u_A 51 RELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVK--------NLGTIAKSGTSE 122 (666) T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HTTC-------- T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH T ss_conf 989874999999999986358200278888469998659899899995388889999998--------723230132899 Q ss_pred C---------CCCCCEEECCCCCCEEEEEEECCCEEEEEEEECC-EEEEEEEE-CCEECCCCEEECCCCCCCCEEEEEEE Q ss_conf 2---------8986048311675203778632644999999789-59999988-98364631387327788870899987 Q gi|254780814|r 109 F---------NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG-NIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLP 177 (803) Q Consensus 109 f---------d~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdg-k~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~P 177 (803) | +...-.---|.-|||.=-+=..|.+.+|.++..+ ..|. |. +|...............+||+|+-.| T Consensus 123 fl~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~V~trs~~~~~~~--W~s~g~~~~~~~~~~~~~~~~GT~I~L~l 200 (666) T 2o1u_A 123 FLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHI--WESDSNEFSVIADPRGNTLGRGTTITLVL 200 (666) T ss_dssp -----------------------CTTGGGGGTEEEEEEEEECTTSCCEE--EEESSSCCEEEECTTCCSSSSEEEEEEEE T ss_pred HHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCE--EEECCCCCEEECCCCCCCCCCCEEEEEEE T ss_conf 9999874210123103334057745113427867999998548877505--89358983574566556668973899970 Q ss_pred CHHHHHHHHCCHHHHHHHHHHHH-CCCCEEEEEEEECC Q ss_conf 78885421000899999999731-14641699999635 Q gi|254780814|r 178 SSDIFSVQDFNYDTLQHRLRELS-FLNSSVQISLIDKR 214 (803) Q Consensus 178 D~~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i~l~Der 214 (803) ..+-=+ -++...|.+-++..+ |+. ..|.+.+++ T Consensus 201 k~~~~e--~l~~~~i~~li~kYs~fi~--~PI~l~~~~ 234 (666) T 2o1u_A 201 KEEASD--YLELDTIKNLVKKYSQFIN--FPIYVWSSK 234 (666) T ss_dssp CTTTTT--SSSTTHHHHHHHHHSTTCC--SCEEEEECC T ss_pred CCCHHH--HCCHHHHHHHHHHHCCCCC--CCEEEECCC T ss_conf 550143--4119999999997413677--776983044 No 31 >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Probab=97.01 E-value=0.0013 Score=45.38 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=84.3 Q ss_pred HHHHHHHHHHH-------HH-----CC--CCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEE-CCCC Q ss_conf 56755578868-------60-----77--97579998389-8399997684453640777885001256--4250-1132 Q gi|254780814|r 46 YEVLDNAIDES-------LE-----GY--ADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVI--MTRL-HAGG 107 (803) Q Consensus 46 ~EiidNsvDe~-------~~-----g~--~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i--~t~L-~ag~ 107 (803) =|+|.||.|-. +. +. .-.|.|..+++ +.++|.|||-|+--+ |++ |++. .+|. T Consensus 52 RELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~~~~l~I~DnGIGMt~~----------el~~~LgtIa~Sgt 121 (281) T 3peh_A 52 RELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKV----------DLINNLGTIAKSGT 121 (281) T ss_dssp HHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHH----------HHHHHHHHHHHSCH T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHH----------HHHHHHHHHCCCCH T ss_conf 77886799999999999736921117887626998873999989999798156789----------99977533134343 Q ss_pred C-CC-----CCCCEEECCCCCCEEEEEEECCCEEEEEEEECCE-EEEEEEECCEECCCCEEEC-CCCCCCCEEEEEEECH Q ss_conf 3-28-----9860483116752037786326449999997895-9999988983646313873-2778887089998778 Q gi|254780814|r 108 K-FN-----QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN-IYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSS 179 (803) Q Consensus 108 k-fd-----~~~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk-~~~q~f~~g~~~~~l~~~~-~~~~~~GT~I~F~PD~ 179 (803) + |. .+...---|.-|||.-.+=..|.+..|.+++.+. .|.-.+.. ...-.+.... .....+||+|+..+.. T Consensus 122 ~~f~~~~~~~~~d~~lIGqFGVGFySaFmVAdkV~V~Tk~~~~~~~~w~s~~-~g~yti~~~~~~~~~~rGT~I~L~Lk~ 200 (281) T 3peh_A 122 SNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTA-DAKFTIYKDPRGATLKRGTRISLHLKE 200 (281) T ss_dssp HHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEET-TSCEEEEECTTCSTTSSEEEEEEEECG T ss_pred HHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCEEEEEECCCCCCCEEEEEEC-CCCCEEEECCCCCCCCCCEEEEEEECC T ss_conf 8888764412552334432031226776406779999547997620899978-998678643556556776389998566 Q ss_pred HHHHHHH-CCHHHHHHHHHHHH-CCCCEEEEEEEECCC Q ss_conf 8854210-00899999999731-146416999996358 Q gi|254780814|r 180 DIFSVQD-FNYDTLQHRLRELS-FLNSSVQISLIDKRS 215 (803) Q Consensus 180 ~iF~~~~-~~~d~l~~R~~~~A-~Ln~gl~i~l~Der~ 215 (803) +- .. ++...|...++..+ |+. ..|.+.+++. T Consensus 201 d~---~efl~~~~l~~likkys~fi~--~PI~l~~e~~ 233 (281) T 3peh_A 201 DA---TNLLNDKKLMDLISKYSQFIQ--FPIYLLHENV 233 (281) T ss_dssp GG---GGGGSHHHHHHHHHHHTTTCC--SCEEEEEEEE T ss_pred HH---HHHHCHHHHHHHHHHHCCCCC--CCEEEEEECC T ss_conf 06---766199999999998414767--6769701125 No 32 >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Probab=96.75 E-value=0.00087 Score=46.84 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=32.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE--EECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH Q ss_conf 53289999999996307787489599943833788--7267179981457898999850011000014577654354689 Q gi|254780814|r 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 (803) Q Consensus 510 G~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~--~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L 587 (803) =+|+.-.|++++-.=|+--++...-.-..||. +| ..++ +...+...+.|..|..+.+ T Consensus 241 p~~L~~il~nLLkNA~ratve~~~~~~~~p~I-~V~i~~~~--------------------~~v~I~IsD~G~GI~~e~l 299 (407) T 2q8g_A 241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPI-QVHVTLGN--------------------EDLTVKMSDRGGGVPLRKI 299 (407) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCE-EEEEEECS--------------------SEEEEEEEECSCCCCHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEEEEECC--------------------CEEEEEEEECCCCCCHHHH T ss_conf 99999999999999999988337668998738-99998478--------------------4799999989989798999 Q ss_pred HHH Q ss_conf 999 Q gi|254780814|r 588 RNF 590 (803) Q Consensus 588 ~~l 590 (803) .++ T Consensus 300 ~~I 302 (407) T 2q8g_A 300 DRL 302 (407) T ss_dssp GGG T ss_pred HHH T ss_conf 877 No 33 >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Probab=96.72 E-value=0.0026 Score=43.19 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=28.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEE-EECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH Q ss_conf 853289999999996307787489599-9438337887267179981457898999850011000014577654354689 Q gi|254780814|r 509 DGAHIRTLLLTFFFRQMPSLIHNGFLY-IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 (803) Q Consensus 509 DG~HI~~Llltff~~~~~~li~~g~~y-ia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L 587 (803) |=.|+.-.|++++--=+.-..+.+--. ...||. .|.... +-+...+...+.|..|..+.+ T Consensus 235 dp~~L~~il~NLL~NAikat~e~~~~~~~~~p~I-~v~i~~------------------~~~~v~I~I~D~G~GIp~e~l 295 (388) T 1gkz_A 235 IPMPLDYILPELLKNAMRATMESHLDTPYNVPDV-VITIAN------------------NDVDLIIRISDRGGGIAHKDL 295 (388) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCE-EEEEEE------------------CSSEEEEEEECCSCCCCTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE-EEEEEE------------------CCCEEEEEEEECCCCCCHHHH T ss_conf 8899999999999999999771675557778847-999971------------------588699999869998799999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780814|r 588 RNFI 591 (803) Q Consensus 588 ~~li 591 (803) .++. T Consensus 296 ~~IF 299 (388) T 1gkz_A 296 DRVM 299 (388) T ss_dssp TTTT T ss_pred HHHC T ss_conf 8762 No 34 >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Probab=96.70 E-value=0.00028 Score=50.67 Aligned_cols=122 Identities=24% Similarity=0.285 Sum_probs=70.2 Q ss_pred HHHHHHHHHHH-----HH--------C-CCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCC-- Q ss_conf 56755578868-----60--------7-797579998389-8399997684453640777885001256425011323-- Q gi|254780814|r 46 YEVLDNAIDES-----LE--------G-YADIITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK-- 108 (803) Q Consensus 46 ~EiidNsvDe~-----~~--------g-~~~~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~k-- 108 (803) -|+|.||+|-. ++ + .--.|.|+++++ .+++|.|||-|+.-+.-.+ -|++.-.+|. T Consensus 53 RELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~~el~~--------~l~tia~S~~~~ 124 (235) T 2ior_A 53 RELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSGTKS 124 (235) T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHHHH--------HHTTCCCTTHHH T ss_pred EEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH T ss_conf 108765999999999987159501058877436888648998899997773324788666--------650220232388 Q ss_pred CC-----CC-CCEEECCCCCCEEEEEEECCCEEEEEEEECCE----EEEEEEECCEECCCCEEECCCCCCCCEEEEEEEC Q ss_conf 28-----98-60483116752037786326449999997895----9999988983646313873277888708999877 Q gi|254780814|r 109 FN-----QK-SYKVSGGLHGVGVSVVNALSSWLKLRIKREGN----IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 (803) Q Consensus 109 fd-----~~-~yk~sgGlhGvG~s~vNalS~~~~v~v~rdgk----~~~q~f~~g~~~~~l~~~~~~~~~~GT~I~F~PD 178 (803) |- +. .-.---|.-|||.-.+=..+.+.+|..++.+. .|.-++ .|... ......+...+||+|+..+- T Consensus 125 f~~~~~~~~~~~~~~IGqFGIGf~S~FmVad~V~V~Trs~~~~~~~~~~w~~-~g~~~--~~i~~~~~~~~GT~I~L~Lk 201 (235) T 2ior_A 125 FLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWES-AGEGE--YTVADITKEDRGTEITLHLR 201 (235) T ss_dssp HHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEE-CSSSE--EEEEEECCCSCEEEEEEEEC T ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEE-CCCCE--EEECCCCCCCCCCEEEEEEC T ss_conf 9875331133441100234500255533067699984466867661135774-58860--55067888999888999989 No 35 >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Probab=96.70 E-value=0.0023 Score=43.62 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=36.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEE-EEEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHHH Q ss_conf 8532899999999963077874895999438337-887267179981457898999850011000014577654354689 Q gi|254780814|r 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY-GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 (803) Q Consensus 509 DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~-~~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~L 587 (803) |-+|++-.|++++--=+.-.++.+..-...||.- .+..+. +...+...+.|..|..+.+ T Consensus 228 dp~~L~qIl~NLl~NAikat~e~~~~~~~~~~I~V~i~~~~--------------------~~v~I~V~D~G~GI~~e~l 287 (394) T 2btz_A 228 VPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGE--------------------EDLSIKMSDRGGGVPLRKI 287 (394) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC--------------------CEEEEEEEECCCCCCHHHH T ss_conf 79999999999999999987620356888870799998579--------------------7899999889999898999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780814|r 588 RNFID 592 (803) Q Consensus 588 ~~li~ 592 (803) .++.+ T Consensus 288 ~~IF~ 292 (394) T 2btz_A 288 ERLFS 292 (394) T ss_dssp HHHTC T ss_pred HHHCC T ss_conf 98738 No 36 >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7} Probab=96.63 E-value=0.0093 Score=38.85 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=61.7 Q ss_pred EEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCC------CC-CCCEEECCCCCCEEEEEEECCCE Q ss_conf 579998389-83999976844536407778850012564250113232------89-86048311675203778632644 Q gi|254780814|r 63 IITVTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF------NQ-KSYKVSGGLHGVGVSVVNALSSW 134 (803) Q Consensus 63 ~I~V~i~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kf------d~-~~yk~sgGlhGvG~s~vNalS~~ 134 (803) .|+|+.+++ +.++|.|||-|+--+.-.. -+-|.-++|.+- +. .... --|.-|||.-.+=..+.+ T Consensus 120 ~I~I~~Dk~~~tltI~DnGIGMt~~el~~-------~LgTIa~Sgt~~F~~~l~~~~~~~~-lIGqFGVGFySaFmVAdk 191 (272) T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELIN-------NLGTIAQSGTAKFLKQIEEGKADSN-LIGQFGVGFYSSFLVSNR 191 (272) T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHHH-------HTTCSCCHHHHHHHHHHHTTSSCTT-CGGGSCCGGGGGGGTEEE T ss_pred EEEEEECCCCCEEEEEECCEEECHHHHHH-------HHCCCCCCCHHHHHHHHHCCCCCCC-HHCCCCCCEEEEEEECCE T ss_conf 49988758789899994332342899987-------7355564653999986421444322-012357541788876068 Q ss_pred EEEEEEECCEEEEEEEECCEECCCCEEEC------CCCCCCCEEEEEEECHH Q ss_conf 99999978959999988983646313873------27788870899987788 Q gi|254780814|r 135 LKLRIKREGNIYEMSFINGILDNPLVVTG------SAGNDTGTEVTFLPSSD 180 (803) Q Consensus 135 ~~v~v~rdgk~~~q~f~~g~~~~~l~~~~------~~~~~~GT~I~F~PD~~ 180 (803) .+|.++.+...|.-+. +|...-.+.... .....+||+|+..+..+ T Consensus 192 V~V~Tk~~~~~~~W~S-~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~Lked 242 (272) T 3ied_A 192 VEVYTKKEDQIYRWSS-DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEE 242 (272) T ss_dssp EEEEEESSSCEEEEEE-CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGG T ss_pred EEEEECCCCCEEEEEE-CCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCC T ss_conf 9999757884168875-59985688644334555567799970899998977 No 37 >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Probab=96.57 E-value=0.00092 Score=46.65 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=34.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCE-EEEECCCEEE-EEECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHH Q ss_conf 8532899999999963077874895-9994383378-8726717998145789899985001100001457765435468 Q gi|254780814|r 509 DGAHIRTLLLTFFFRQMPSLIHNGF-LYIIKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 (803) Q Consensus 509 DG~HI~~Llltff~~~~~~li~~g~-~yia~ppl~~-~~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~ 586 (803) |-+|+.-.|.+++--=+.--++.+. .-...||.-- |..++ ++..+...+.|..|..+. T Consensus 250 dp~~L~qIL~NLL~NAikat~e~~~~~~~~~P~I~V~i~~~~--------------------~~v~I~IsD~G~GI~~e~ 309 (419) T 1y8o_A 250 VPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGK--------------------EDLSIKISDLGGGVPLRK 309 (419) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECS--------------------SEEEEEEEECSCCCCHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC--------------------CEEEEEEEECCCCCCHHH T ss_conf 799999999999998999888652346788870799998569--------------------689999987999989899 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780814|r 587 LRNFID 592 (803) Q Consensus 587 L~~li~ 592 (803) +.++.+ T Consensus 310 ~~~IF~ 315 (419) T 1y8o_A 310 IDRLFN 315 (419) T ss_dssp HGGGGC T ss_pred HHHHCC T ss_conf 987707 No 38 >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Probab=96.38 E-value=0.0037 Score=41.93 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=36.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEE--EECCCEEEEECHHHHHHHHHHHCCCCHHCCCCCCCCCCCHHH Q ss_conf 853289999999996307787489599943833788--726717998145789899985001100001457765435468 Q gi|254780814|r 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 (803) Q Consensus 509 DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~--~~~K~E~YikDD~EL~~~Ll~~gl~~~~l~~~~~~~~l~ge~ 586 (803) |-+|++-.|++++--=+.-.++.+.-....||. +| ..++ ++..+...+.|..|..+. T Consensus 227 dp~~L~~il~NLl~NAikat~e~~~~~~~~~~I-~v~v~~~~--------------------~~v~I~VsD~G~GI~~e~ 285 (394) T 2e0a_A 227 VPSHLHHMLFELFKNAMRATVEHQENQPSLTPI-EVIVVLGK--------------------EDLTIKISDRGGGVPLRI 285 (394) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCE-EEEEEECS--------------------SEEEEEEEECSCCCCGGG T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE-EEEEECCC--------------------CEEEEEEEECCCCCCHHH T ss_conf 899999999999999999998638778988728-99996279--------------------979999996699989899 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780814|r 587 LRNFID 592 (803) Q Consensus 587 L~~li~ 592 (803) +.++.+ T Consensus 286 l~~IF~ 291 (394) T 2e0a_A 286 IDRLFS 291 (394) T ss_dssp HHHHTS T ss_pred HHHHCC T ss_conf 987616 No 39 >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Probab=96.25 E-value=0.0064 Score=40.11 Aligned_cols=95 Identities=18% Similarity=0.318 Sum_probs=57.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC Q ss_conf 6325445656755578868607797579998389-8--399997684453640777885001256425011323289860 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y 114 (803) ..-|.+++.-+|+||+.-. ...|.|.+..+ + .|+|+|||.|||-+.. +-||.....+. . + T Consensus 45 ~~~l~~vl~NLi~NAik~~----~~~I~i~~~~~~~~~~i~V~D~G~GI~~e~~--------~~iF~~F~r~~---~-~- 107 (161) T 1bxd_A 45 PLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR--------KHLFQPFVRGD---S-A- 107 (161) T ss_dssp HHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGG--------GCSSCCCCCCS---C-C- T ss_pred HHHHHHHHHHHHHHHHHHC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHH--------HHHHCCCEECC---C-C- T ss_conf 9999999999999999747----9859999999669899999986755599999--------88658835887---8-8- Q ss_pred EEECCCCCCEEEEEEECCC----EEEEEEEEC-CEEEEEEE Q ss_conf 4831167520377863264----499999978-95999998 Q gi|254780814|r 115 KVSGGLHGVGVSVVNALSS----WLKLRIKRE-GNIYEMSF 150 (803) Q Consensus 115 k~sgGlhGvG~s~vNalS~----~~~v~v~rd-gk~~~q~f 150 (803) +.++| .|+|.+.|..+-+ .+.|+...+ |-.+...| T Consensus 108 ~~~~G-~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~l 147 (161) T 1bxd_A 108 RTISG-TGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147 (161) T ss_dssp CCCCC-CSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEE T ss_pred CCCCC-CCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE T ss_conf 86888-66079999999998799899997399918999999 No 40 >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Probab=96.14 E-value=0.003 Score=42.68 Aligned_cols=151 Identities=22% Similarity=0.248 Sum_probs=83.8 Q ss_pred HHHHHHHHHHH-------HH-------CCCCEEEEEECCC-CEEEEEECCCCCCCC-CCCCCCCCEEEEEEEEECCCCC- Q ss_conf 56755578868-------60-------7797579998389-839999768445364-0777885001256425011323- Q gi|254780814|r 46 YEVLDNAIDES-------LE-------GYADIITVTLNMD-GSCTVSDNGRGIPTD-LHKEEGISAAEVIMTRLHAGGK- 108 (803) Q Consensus 46 ~EiidNsvDe~-------~~-------g~~~~I~V~i~~d-gsisV~dnGrGIPv~-~h~~~~~~~~E~i~t~L~ag~k- 108 (803) =|+|.||+|-. +. +.--.|.|+++++ ++++|.|||=|+--+ +|. .+=|.-++|.+ T Consensus 33 RELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~i~DnGiGMt~~el~~--------~LgtIa~Sgt~~ 104 (624) T 2ioq_A 33 RELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVID--------HLGTIAKSGTKS 104 (624) T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHH--------HHHHHCC----- T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHH--------HHHHHHHHHHHH T ss_conf 999872999999999987159131078888469999759889899995388889999998--------766760241799 Q ss_pred CC-----CCCCEE-ECCCCCCEEEEEEECCCEEEEEEEECC--EEEEEEEE-CCEECCCCEEECCCCCCCCEEEEEEECH Q ss_conf 28-----986048-311675203778632644999999789--59999988-9836463138732778887089998778 Q gi|254780814|r 109 FN-----QKSYKV-SGGLHGVGVSVVNALSSWLKLRIKREG--NIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSS 179 (803) Q Consensus 109 fd-----~~~yk~-sgGlhGvG~s~vNalS~~~~v~v~rdg--k~~~q~f~-~g~~~~~l~~~~~~~~~~GT~I~F~PD~ 179 (803) |- +..... --|.-|||.=-+=..+.+.+|.++.-| ....-.|+ +|...-.+.. .+...+||+|+..|.+ T Consensus 105 f~~~~~~~~~~~~~~IGqFGvGfyS~FmVad~V~v~srs~~~~~~~~~~w~~~g~~~~~i~~--~~~~~~GT~I~L~lk~ 182 (624) T 2ioq_A 105 FLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVAD--ITKEDRGTEITLHLRE 182 (624) T ss_dssp ----------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCCEEEE--ECCSSSEEEEEEEECT T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEECC--CCCCCCCCEEEEEECC T ss_conf 99986641024434354232120001333787999972268877641799957987136446--7767875069973165 Q ss_pred HHHHHHHCCHHHHHHHHHHHH-CCCCEEEE Q ss_conf 885421000899999999731-14641699 Q gi|254780814|r 180 DIFSVQDFNYDTLQHRLRELS-FLNSSVQI 208 (803) Q Consensus 180 ~iF~~~~~~~d~l~~R~~~~A-~Ln~gl~i 208 (803) +-= .-++.+.|.+.++..+ |+.--+.+ T Consensus 183 d~~--e~l~~~~i~~li~kYs~fi~~PI~l 210 (624) T 2ioq_A 183 GED--EFLDDWRVRSIISKYSDHIALPVEI 210 (624) T ss_dssp TCG--GGGCHHHHHHHHHHHHTTCSSCEEE T ss_pred CHH--HHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 067--6642999999898526577877487 No 41 >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Probab=96.01 E-value=0.0046 Score=41.25 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=55.9 Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCE Q ss_conf 25445656755578868607-797579998389-8--3999976844536407778850012564250113232898604 Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLEG-YADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 (803) Q Consensus 40 Gl~hlv~EiidNsvDe~~~g-~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk 115 (803) -+.-.|.|++.|||.-+..+ -...|.|++..+ + .|+|+|||+|||-.. .+|--+ |. .+ T Consensus 39 di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~~~~----------~~~~~~-----~~---~~ 100 (145) T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIE----------EARQPL-----FT---TK 100 (145) T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCSCHH----------HHTCCC------------ T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHH----------HCCCCC-----CC---CC T ss_conf 9999999999999884348999908999999937899999996478958577----------537877-----54---46 Q ss_pred EECCCCCCEEEEEEECCCEEEEEEEEC-CEEEEEE Q ss_conf 831167520377863264499999978-9599999 Q gi|254780814|r 116 VSGGLHGVGVSVVNALSSWLKLRIKRE-GNIYEMS 149 (803) Q Consensus 116 ~sgGlhGvG~s~vNalS~~~~v~v~rd-gk~~~q~ 149 (803) ...+..|.|..++..+...+.++...+ |....++ T Consensus 101 ~~~~~~GlGL~ii~~l~d~i~i~s~~~~Gt~v~l~ 135 (145) T 1th8_A 101 PELERSGMGFTIMENFMDEVIVESEVNKGTTVYLK 135 (145) T ss_dssp ---CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEE T ss_pred CCCCCCCHHHHHHHHHCCEEEEEECCCCCEEEEEE T ss_conf 79995736899999969999999839996999999 No 42 >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Probab=95.72 E-value=0.018 Score=36.68 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=36.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCC Q ss_conf 325445656755578868607797579998389-8--39999768445364077 Q gi|254780814|r 39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHK 89 (803) Q Consensus 39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~ 89 (803) .-|.+++.|.+.|++--+ .++.|.|.+..+ + .++|.|||.|+|-+... T Consensus 39 ~~l~~ii~E~ltNa~kHa---~a~~v~v~l~~~~~~~~l~V~DnG~g~~~~~~~ 89 (128) T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEENSF 89 (128) T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSSCC T ss_pred HHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCCCCCC T ss_conf 999999999999999847---996799999987999999999799454345578 No 43 >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Probab=95.34 E-value=0.024 Score=35.65 Aligned_cols=74 Identities=22% Similarity=0.395 Sum_probs=49.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC Q ss_conf 63254456567555788686077975799983898---399997684453640777885001256425011323289860 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG---SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg---sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y 114 (803) ..-+.+++.-+++||++-.- ....|.|+...++ .|+|+|+|.|||-+..+ -||....++ | T Consensus 45 ~~~l~qvl~NLi~NAi~~~~--~~~~I~i~~~~~~~~v~i~V~D~G~Gi~~e~~~--------~iFe~F~t~-k------ 107 (152) T 3a0y_A 45 RTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFTT-K------ 107 (152) T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTT--------GGGSTTCCC-C------ T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCEEEEEEECCCCCCCHHHHH--------HCCCCCEEC-C------ T ss_conf 99999999999999999814--997799999965988999997089998999998--------716995188-9------ Q ss_pred EEECCCCCCEEEEEEEC Q ss_conf 48311675203778632 Q gi|254780814|r 115 KVSGGLHGVGVSVVNAL 131 (803) Q Consensus 115 k~sgGlhGvG~s~vNal 131 (803) ++| .|+|.++|.-+ T Consensus 108 --~~G-tGLGL~i~k~i 121 (152) T 3a0y_A 108 --TQG-TGLGLSICRKI 121 (152) T ss_dssp ----C-CCCSHHHHHHH T ss_pred --CCC-CCHHHHHHHHH T ss_conf --895-06799999999 No 44 >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Probab=95.25 E-value=0.019 Score=36.41 Aligned_cols=86 Identities=21% Similarity=0.462 Sum_probs=52.4 Q ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEC Q ss_conf 87154327996325445656755578868607797579998389-8--39999768445364077788500125642501 Q gi|254780814|r 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLH 104 (803) Q Consensus 28 P~mYiG~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ 104 (803) +.+..| | ..-|++++.-+|+||+.-. -...|.|....+ + .|+|.|||.|||-+.. +-||.... T Consensus 37 ~~~v~~--d-~~~l~~vl~NLl~NAiky~---~~~~I~i~~~~~~~~v~i~V~D~G~GI~~~~~--------~~iF~~F~ 102 (150) T 1ysr_A 37 TCIIVG--L-PAGLRLAVDNAIANAVKHG---GATLVQLSAVSSRAGVEIAIDDNGSGVPEGER--------QVVFERFS 102 (150) T ss_dssp CCEEEE--C-HHHHHHHHHHHHHHHHHTT---CCSEEEEEEEEETTEEEEEEEESSSCCCGGGH--------HHHHTSCC T ss_pred CCEEEE--C-HHHHHHHHHHHHHHHHHHC---CCCEEEEEEEEECCEEEEEEEECCCCCCHHHH--------HHHCCCCC T ss_conf 968998--9-9999999999999999748---99789999998099999999984879798999--------98557634 Q ss_pred CCCCCCCCCCEEECCCCCCEEEEEEECCCE Q ss_conf 132328986048311675203778632644 Q gi|254780814|r 105 AGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134 (803) Q Consensus 105 ag~kfd~~~yk~sgGlhGvG~s~vNalS~~ 134 (803) .+. .. + .+| +|+|.++|..+-+. T Consensus 103 r~~---~~--~-~~G-~GLGL~i~k~i~~~ 125 (150) T 1ysr_A 103 RGS---TA--S-HSG-SGLGLALVAQQAQL 125 (150) T ss_dssp ------------------CCCHHHHHHHHH T ss_pred CCC---CC--C-CCC-CCHHHHHHHHHHHH T ss_conf 179---99--9-896-07799999999998 No 45 >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Probab=94.94 E-value=0.021 Score=36.17 Aligned_cols=76 Identities=21% Similarity=0.389 Sum_probs=46.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC Q ss_conf 6325445656755578868607797579998389-8--399997684453640777885001256425011323289860 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y 114 (803) ..-|.+++.-+|+||++-.-. ...|.|.+..+ + .|+|.|||.|||-+..+ -||.-..++ +. T Consensus 121 ~~~l~qvl~NLl~NAik~~~~--~~~i~i~~~~~~~~v~i~V~D~G~GI~~e~~~--------~iFepF~~t-----k~- 184 (244) T 3d36_A 121 REKFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLE--------RLGEPYFTT-----KG- 184 (244) T ss_dssp HHHHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHHHH--------HTTSTTCCS-----SG- T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCEEEEEEEEECCEEEEEEEECCCCCCHHHHH--------HHCCCCCCC-----CC- T ss_conf 999999999999999986768--97689999960888999999868898989999--------866998658-----99- Q ss_pred EEECCCCCCEEEEEEECC Q ss_conf 483116752037786326 Q gi|254780814|r 115 KVSGGLHGVGVSVVNALS 132 (803) Q Consensus 115 k~sgGlhGvG~s~vNalS 132 (803) ++| .|.|.++|.-+- T Consensus 185 --~~G-tGLGL~i~k~iv 199 (244) T 3d36_A 185 --VKG-TGLGMMVVYRII 199 (244) T ss_dssp --GGC-CSCHHHHHHHHH T ss_pred --CCC-CCHHHHHHHHHH T ss_conf --996-476899999999 No 46 >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Probab=94.62 E-value=0.027 Score=35.23 Aligned_cols=79 Identities=29% Similarity=0.425 Sum_probs=47.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEC Q ss_conf 32544565675557886860779757999838983999976844536407778850012564250113232898604831 Q gi|254780814|r 39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 (803) Q Consensus 39 ~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~yk~sg 118 (803) .-|.+++.-+|+||+.-+ ..+..|.|++..+ .++|+|||.|||-+.. +-||-....+. + +.+. T Consensus 116 ~~l~~vl~NLl~NAikys--~~~~~I~i~~~~~-~~~v~D~G~GI~~e~~--------~~iFe~F~r~~---~---~~~~ 178 (222) T 3jz3_A 116 LLLSLLVRNLLDNAVRYS--PQGSVVDVTLNAD-NFIVRDNGPGVTPEAL--------ARIGERFYRPP---G---QTAT 178 (222) T ss_dssp HHHHHHHHHHHHHHHHTC--CTTCEEEEEECSS-EEEEECSCC------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHC--CCCCEEEEEEEEE-EEEECCCCCCCCHHHH--------HHHCCCCCCCC---C---CCCC T ss_conf 999999999999999868--9996799999742-4998358999899999--------98617974189---9---9999 Q ss_pred CCCCCEEEEEEECCCEE Q ss_conf 16752037786326449 Q gi|254780814|r 119 GLHGVGVSVVNALSSWL 135 (803) Q Consensus 119 GlhGvG~s~vNalS~~~ 135 (803) | .|+|.++|.-+-+.. T Consensus 179 G-~GLGL~Ivk~iv~~h 194 (222) T 3jz3_A 179 G-SGLGLSIVQRIAKLH 194 (222) T ss_dssp ----CTHHHHHHHHHHT T ss_pred C-CCHHHHHHHHHHHHC T ss_conf 5-267899999999983 No 47 >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Probab=94.62 E-value=0.045 Score=33.51 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=47.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC--CCC-EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC Q ss_conf 63254456567555788686077975799983--898-399997684453640777885001256425011323289860 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLN--MDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~--~dg-sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~y 114 (803) ..-|.+++.-+|+||+.-+- ..|.|.+. .+. .|+|.|||.|||-+..+ -||.....+ +.. T Consensus 42 ~~~l~~vl~NLl~NAiky~~----~~i~I~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~iF~~F~r~---~~~-- 104 (152) T 1id0_A 42 QNDFVEVMGNVLDNACKYCL----EFVEISARQTDEHLYIVVEDDGPGIPLSKRE--------VIFDRGQRV---DTL-- 104 (152) T ss_dssp HHHHHHHHHHHHHHHHHHCS----SEEEEEEEECSSCEEEEEEESSSCCCGGGTT--------GGGSCCCCT---TCC-- T ss_pred HHHHHHHHHHHHHHHHHHCC----CCEEEEEEEECCEEEEEEEECCCCCCHHHHH--------HHCCCCCCC---CCC-- T ss_conf 99999999999999999779----9889999997999999999889998989999--------872897048---999-- Q ss_pred EEECCCCCCEEEEEEECCCEE Q ss_conf 483116752037786326449 Q gi|254780814|r 115 KVSGGLHGVGVSVVNALSSWL 135 (803) Q Consensus 115 k~sgGlhGvG~s~vNalS~~~ 135 (803) ..| .|+|.++|..+-+.. T Consensus 105 --~~G-~GLGL~i~k~iv~~h 122 (152) T 1id0_A 105 --RPG-QGVGLAVAREITEQY 122 (152) T ss_dssp --CTT-CCSCHHHHHHHHHHT T ss_pred --CCC-CCHHHHHHHHHHHHC T ss_conf --897-147999999999985 No 48 >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} Probab=94.41 E-value=0.05 Score=33.16 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=5.4 Q ss_pred CCHHHHHHHHH Q ss_conf 32899999999 Q gi|254780814|r 511 AHIRTLLLTFF 521 (803) Q Consensus 511 ~HI~~Llltff 521 (803) ..++..|.|++ T Consensus 243 ~~l~qvl~NLl 253 (349) T 3a0r_A 243 TRIKQVLINLV 253 (349) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 89999999999 No 49 >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Probab=94.36 E-value=0.042 Score=33.76 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=52.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCC-C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC Q ss_conf 63254456567555788686077-97579998389-8--39999768445364077788500125642501132328986 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGY-ADIITVTLNMD-G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~-~~~I~V~i~~d-g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~ag~kfd~~~ 113 (803) ..-|++++.-+|+||+.-.-.|- ...|.|....+ + .|+|.|+|.|||-+.. +-||.....+.+- .. T Consensus 136 ~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D~G~GI~~e~~--------~~iF~~F~r~~~~--~~ 205 (258) T 2c2a_A 136 PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK--------DRIFEQFYRVDSS--LT 205 (258) T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT--------TGGGSTTCCCC------ T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHH--------HHHCCCCCCCCCC--CC T ss_conf 9999999999999999855358982489999960599899999982898898999--------9874598828888--88 Q ss_pred CEEECCCCCCEEEEEEECCCE Q ss_conf 048311675203778632644 Q gi|254780814|r 114 YKVSGGLHGVGVSVVNALSSW 134 (803) Q Consensus 114 yk~sgGlhGvG~s~vNalS~~ 134 (803) .+ .+| .|+|.++|.-+-+. T Consensus 206 ~~-~~G-~GLGL~i~k~iv~~ 224 (258) T 2c2a_A 206 YE-VPG-TGLGLAITKEIVEL 224 (258) T ss_dssp -------CCCTHHHHHHHHHH T ss_pred CC-CCC-CCHHHHHHHHHHHH T ss_conf 99-994-04899999999998 No 50 >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Probab=93.71 E-value=0.033 Score=34.59 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---EEEEEECCCCCCCC Q ss_conf 254456567555788686077975799983898---39999768445364 Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDG---SCTVSDNGRGIPTD 86 (803) Q Consensus 40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~dg---sisV~dnGrGIPv~ 86 (803) -+.+.+..+++||++..- .....|.|.+..++ .|+|.|||+|||-+ T Consensus 112 ~l~~il~nli~NAi~~~~-~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~ 160 (192) T 1ixm_A 112 KLMRKLFHLFDQAVSRES-ENHLTVSLQTDHPDRQLILYLDFHGAFADPS 160 (192) T ss_dssp HHHHHHHHHHHHHBCTTS-CCEEEEEEECCCSSSSCEEEEEEESCBSCGG T ss_pred HHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCEEEEEEEECCCCCCHH T ss_conf 999999999999887427-8986699999967999999999768856889 No 51 >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Probab=91.39 E-value=0.16 Score=29.29 Aligned_cols=45 Identities=24% Similarity=0.161 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CEEEEEECCCCCCCCC Q ss_conf 25445656755578868607797579998389---8399997684453640 Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMD---GSCTVSDNGRGIPTDL 87 (803) Q Consensus 40 Gl~hlv~EiidNsvDe~~~g~~~~I~V~i~~d---gsisV~dnGrGIPv~~ 87 (803) .+..++.|.+.|++..+. +..|.|.+..+ -.++|.|||.|+|.+. T Consensus 130 ~l~~il~ell~Na~kh~~---~~~v~i~~~~~~~~~~i~v~Dng~g~~~~~ 177 (218) T 3ehh_A 130 ILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218) T ss_dssp HHHHHHHHHHHHHHHHTC---CSEEEEEEEEETTEEEEEEEESSCCCC--- T ss_pred HHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCEEEEECCCCCCCCCCCC T ss_conf 999999999971121145---505898741432034322147987667778 No 52 >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3 Probab=89.63 E-value=0.35 Score=26.62 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCC-------EEEEEECCC---C--EEEEEECCCCCCCCCCCCCCCCEEEEEEEEECC Q ss_conf 6325445656755578868607797-------579998389---8--399997684453640777885001256425011 Q gi|254780814|r 38 ESGLHHMIYEVLDNAIDESLEGYAD-------IITVTLNMD---G--SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA 105 (803) Q Consensus 38 ~~Gl~hlv~EiidNsvDe~~~g~~~-------~I~V~i~~d---g--sisV~dnGrGIPv~~h~~~~~~~~E~i~t~L~a 105 (803) ..-|.++++-++.||++-.-.+... ...+.+..+ . .|+|.|||.|||-+..+ -+|.-..+ T Consensus 46 ~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~pf~t 117 (160) T 1r62_A 46 PDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQD--------TLFYPMVS 117 (160) T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------------- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCEEEEEECCCCCCCCHHHHH--------HHCCCCEE T ss_conf 9999999999999999850368961688641023034302356846899978788977989999--------72787220 Q ss_pred CCCCCCCCCEEECCCCCCEEEEEEECC Q ss_conf 323289860483116752037786326 Q gi|254780814|r 106 GGKFNQKSYKVSGGLHGVGVSVVNALS 132 (803) Q Consensus 106 g~kfd~~~yk~sgGlhGvG~s~vNalS 132 (803) .| .+| .|.|.++|.-+- T Consensus 118 -~k--------~~G-~GLGL~i~~~iv 134 (160) T 1r62_A 118 -GR--------EGG-TGLGLSIARNLI 134 (160) T ss_dssp ----------------CHHHHHHHHHH T ss_pred -CC--------CCC-CCCCHHHHHHHH T ss_conf -48--------899-866199999999 No 53 >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* Probab=77.08 E-value=1 Score=23.09 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=28.0 Q ss_pred HHHHHHHHHHHHHHHHHHH--------CC--CCEEEEEECCC-C--EEEEEECCCCCCCC Q ss_conf 2544565675557886860--------77--97579998389-8--39999768445364 Q gi|254780814|r 40 GLHHMIYEVLDNAIDESLE--------GY--ADIITVTLNMD-G--SCTVSDNGRGIPTD 86 (803) Q Consensus 40 Gl~hlv~EiidNsvDe~~~--------g~--~~~I~V~i~~d-g--sisV~dnGrGIPv~ 86 (803) -|...+-.++.||+|-... |- ...|.+....+ + .+++.|||+||+.. T Consensus 106 ~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~ 165 (379) T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKE 165 (379) T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCC T ss_conf 999999999877776434786289886403555303799974987999994068776643 No 54 >2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} Probab=72.98 E-value=3.9 Score=18.47 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=34.2 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC-EEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCC Q ss_conf 7373899850888853289999999996307787489-599943833788726717998145789899985001 Q gi|254780814|r 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG-FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 (803) Q Consensus 496 rY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g-~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl 568 (803) ...+|+|+-|.|.-|-. .-.|....|.+.| .++++.+| +..+.++||.+.|. T Consensus 286 ~~~~vvl~~D~D~AG~~-------A~~k~~~~l~~~g~~v~vv~lP--------------~gkDpdd~l~~~g~ 338 (407) T 2au3_A 286 FTKKVYILYDGDDAGRK-------AMKSAIPLLLSAGVEVYPVYLP--------------EGYDPDEFIKEFGK 338 (407) T ss_dssp TCSEEEEECCSSHHHHH-------HHHHHHHHHHHTTCEEEEECCC--------------TTCCHHHHHHHHCH T ss_pred CCCEEEEECCCCHHHHH-------HHHHHHHHHHHCCCEEEEEECC--------------CCCCHHHHHHHCCH T ss_conf 16715884588699999-------9999999987517604899798--------------99895999987399 No 55 >3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, structural genomics, PSI-2; 1.80A {Homo sapiens} PDB: 2dkq_A Probab=65.23 E-value=5.5 Score=17.32 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=29.9 Q ss_pred CEECCCC--CCCHHHHHHHHHHHHHHHHHHHCC----CCEEEEEECCCCEEEEEECCCCCC Q ss_conf 1543279--963254456567555788686077----975799983898399997684453 Q gi|254780814|r 30 MYIGDTD--GESGLHHMIYEVLDNAIDESLEGY----ADIITVTLNMDGSCTVSDNGRGIP 84 (803) Q Consensus 30 mYiG~t~--~~~Gl~hlv~EiidNsvDe~~~g~----~~~I~V~i~~dgsisV~dnGrGIP 84 (803) +|+||++ ..+|. +++..||...++.. ...+.+.|..+ .|+|.|++++-. T Consensus 19 ~YLGSv~V~~~~G~-----~vi~~Ai~~l~~~~~~~k~~~V~L~VS~~-GIkv~D~~~~~~ 73 (157) T 3hqc_A 19 LYLTSVETESLTGP-----QAVARASSAALSCSPRPTPAVVHFKVSAQ-GITLTDNQRKLF 73 (157) T ss_dssp EEEEEEECTTCCHH-----HHHHHHHHHHHHCC---CCEEEEEEEETT-EEEEEEEETTEE T ss_pred EEEEEEEECCCCCH-----HHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCCCE T ss_conf 98737991799988-----99999999999728899994899999638-299997898857 No 56 >1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A Probab=57.30 E-value=7.4 Score=16.32 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=29.7 Q ss_pred CEECCCC--CCCHHHHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCEEEEEECCCCCCC Q ss_conf 1543279--9632544565675557886860779----757999838983999976844536 Q gi|254780814|r 30 MYIGDTD--GESGLHHMIYEVLDNAIDESLEGYA----DIITVTLNMDGSCTVSDNGRGIPT 85 (803) Q Consensus 30 mYiG~t~--~~~Gl~hlv~EiidNsvDe~~~g~~----~~I~V~i~~dgsisV~dnGrGIPv 85 (803) +|+||+. ..+|. +++..||+..++... ..+.++|..+ .|+|.|+-++-.+ T Consensus 7 ~YLGs~~V~~~~G~-----~~i~~Av~~l~~~~~~~k~~~V~l~Vs~~-GIki~d~~~~~~~ 62 (134) T 1wvh_A 7 LFINSVEMESLTGP-----QAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKLFF 62 (134) T ss_dssp EEEEEEEEETCCHH-----HHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCSSC T ss_pred EEEEEEEECCCCCH-----HHHHHHHHHHHHCCCCCCCEEEEEEEECC-EEEEEECCCCCEE T ss_conf 98625993798898-----99999999999618899984999999269-6899946888468 No 57 >2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A* Probab=48.39 E-value=5.5 Score=17.33 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=34.0 Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCC Q ss_conf 738998508888532899999999963077874895999438337887267179981457898999850011 Q gi|254780814|r 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 (803) Q Consensus 498 ~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~ 569 (803) -.|||++|.|.-|--++.-|...| | +.-++|| ||.|+= .=--.++.+...|...+++ T Consensus 51 ~~Iil~~D~D~aG~k~~~~l~~~L----~---~a~~~~i--~~~~~~------v~~~p~~~~~~~l~~~~~~ 107 (119) T 2fcj_A 51 YDVYLLADADEAGEKLRRQFRRMF----P---EAEHLYI--DRAYRE------VAAAPIWHLAQVLLRARFD 107 (119) T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC----T---TSEEECC--CTTTCS------TTTSCHHHHHHHHHHTTCC T ss_pred CEEEEECCCCHHHHHHHHHHHHHC----C---CCCEEEE--CCCCCC------HHHCCHHHHHHHHHHCCCH T ss_conf 869997389779999999999867----7---5638986--677634------3119989999999986860 No 58 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=44.98 E-value=8.7 Score=15.79 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999987400357999877899988775 Q gi|254780814|r 363 GLSAWLEEHPLEAKIIVKKVLDASMVRD 390 (803) Q Consensus 363 ~l~~~l~~n~~~ak~i~~k~~~a~~ar~ 390 (803) .+...+.+++..|..+.+++....+.|. T Consensus 284 av~LLls~d~~~a~~la~~L~~lN~~Rk 311 (666) T 2zxr_A 284 ALRLLLTDDAAEAQALVGELHRLNARRQ 311 (666) T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 4455513788999999999988899999 No 59 >1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1 Probab=38.94 E-value=2.2 Score=20.43 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=31.5 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEECCCEEEEECHHHHHHHHHHHCCCCH Q ss_conf 7373899850888853289999999996307787489599943833788726717998145789899985001100 Q gi|254780814|r 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 (803) Q Consensus 496 rY~kiiimtDaD~DG~HI~~Llltff~~~~~~li~~g~~yia~ppl~~~~~~K~E~YikDD~EL~~~Ll~~gl~~~ 571 (803) ++.+||||+|.|.-|.-.+.=+... |...|.. + +.+.+++|-+.+.... T Consensus 61 ~~~~Vil~~D~D~aG~~~~~k~~~~-------L~~~g~~---------v-----------~~d~~~~l~~~g~~~i 109 (118) T 1t6t_1 61 KWEKVILLFDLDTHGERINQKMKEL-------LSSQGFL---------V-----------DENFRNFLKKWNIIHI 109 (118) T ss_dssp TCSEEEECCCSSHHHHHHHHHHHHH-------HHHTTCE---------E-----------ECHHHHHHHHTTCCCG T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH-------HHHCCCC---------C-----------CCCHHHHHHHCCHHHH T ss_conf 4893899867888899999999999-------9987791---------3-----------7599999988196999 No 60 >3ggq_A Capsid protein; beta barrel, cytoplasm, RNA-binding, virion; 2.00A {Hepatitis e virus genotype 1} Probab=36.76 E-value=10 Score=15.34 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=9.9 Q ss_pred CCCCCCCCEEECCCCCCEEE Q ss_conf 23289860483116752037 Q gi|254780814|r 107 GKFNQKSYKVSGGLHGVGVS 126 (803) Q Consensus 107 ~kfd~~~yk~sgGlhGvG~s 126 (803) .-|+...|.-|-|--+++.. T Consensus 25 AEy~Qs~~~~s~~p~y~s~t 44 (149) T 3ggq_A 25 AEYDQSTYGSSTGPVYVSDS 44 (149) T ss_dssp CEEESSSSSBTTBCEEEESE T ss_pred HCCCCCCCCCCCCCCEEEEE T ss_conf 10561001455677245015 No 61 >1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Probab=33.43 E-value=16 Score=13.66 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=11.6 Q ss_pred EEECCC---CEEEEEECCCCCCC Q ss_conf 998389---83999976844536 Q gi|254780814|r 66 VTLNMD---GSCTVSDNGRGIPT 85 (803) Q Consensus 66 V~i~~d---gsisV~dnGrGIPv 85 (803) |.++.+ .+++|.|+|.-.|+ T Consensus 9 vI~~~~~~~~si~i~N~~~~~p~ 31 (206) T 1l4i_A 9 VIYPEGQKQVQLAVTNNDDKSSY 31 (206) T ss_dssp EEEETTCSEEEEEEEECCTTCEE T ss_pred EEEECCCCEEEEEEEECCCCCCE T ss_conf 99938996789999939999638 No 62 >1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1 Probab=32.60 E-value=7.7 Score=16.21 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=4.6 Q ss_pred EEEECCCCCC Q ss_conf 9997684453 Q gi|254780814|r 75 TVSDNGRGIP 84 (803) Q Consensus 75 sV~dnGrGIP 84 (803) .|.++|+-|= T Consensus 158 ~v~~~G~ei~ 167 (350) T 1ux6_A 158 VVRHQGKELV 167 (350) T ss_dssp EC-----CEE T ss_pred EEECCCCEEE T ss_conf 7843885678 No 63 >3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A Probab=32.34 E-value=17 Score=13.52 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=30.9 Q ss_pred HHCCCCCCEECCC--CCCCHHHHHHHHHHHHHHHHHHH----CCCCEEEEEECCCCEEEEEECCCCCCCCCCC Q ss_conf 0004587154327--99632544565675557886860----7797579998389839999768445364077 Q gi|254780814|r 23 AVKKRPSMYIGDT--DGESGLHHMIYEVLDNAIDESLE----GYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 (803) Q Consensus 23 ~vrkRP~mYiG~t--~~~~Gl~hlv~EiidNsvDe~~~----g~~~~I~V~i~~dgsisV~dnGrGIPv~~h~ 89 (803) .+..=+..|+|++ ++..|. +++..||+.-.. .....+.+.|..+ .|.|.|...+-++..|| T Consensus 6 ~~~~f~v~YLG~~~v~~~~G~-----~~v~~ai~~l~~~~~~~~~~~V~l~Vs~~-gv~v~d~~t~~~l~~~~ 72 (140) T 3dxe_A 6 LVQKFQVYYLGNVPVAKPVGV-----DVINGALESVLSSSSREQWTPSHVSVAPA-TLTILHQQTEAVLGECR 72 (140) T ss_dssp ----CEEEEEEEEEESCSCCH-----HHHHHHHHHHHHTCCGGGCEEEEEEECSS-EEEEEETTTCCEEEEEE T ss_pred CCEEEEEEEEEEEEECCCCCH-----HHHHHHHHHHHHHCCCCCCCEEEEEEECC-EEEEEECCCCEEEEEEE T ss_conf 635999999899993887886-----99999999998635678985599999389-89999679977999985 No 64 >1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A* Probab=31.70 E-value=13 Score=14.42 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=5.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 56888999999999 Q gi|254780814|r 291 GLRSALTRQITSYV 304 (803) Q Consensus 291 gf~~al~~~i~~y~ 304 (803) -+.++.+|.+-++. T Consensus 161 ~~~a~~aR~~~D~l 174 (592) T 1mw9_X 161 RVNAQQARRFMDRV 174 (592) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 89999999997187 No 65 >2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex, inhibit; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 1n0l_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Probab=31.69 E-value=16 Score=13.65 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=10.3 Q ss_pred CEEEEEECCCCCCC Q ss_conf 83999976844536 Q gi|254780814|r 72 GSCTVSDNGRGIPT 85 (803) Q Consensus 72 gsisV~dnGrGIPv 85 (803) .+++|.|+|.-.|+ T Consensus 18 ~s~~v~N~~~~~p~ 31 (218) T 2xg5_A 18 MTLDISNDNKQLPY 31 (218) T ss_dssp EEEEEEECCSSSCE T ss_pred EEEEEEECCCCCCE T ss_conf 89999949998658 No 66 >2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Probab=31.05 E-value=17 Score=13.48 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=6.1 Q ss_pred CEEEEEECCC Q ss_conf 8399997684 Q gi|254780814|r 72 GSCTVSDNGR 81 (803) Q Consensus 72 gsisV~dnGr 81 (803) -+++|.|+|. T Consensus 30 ~sl~l~N~~~ 39 (221) T 2co7_B 30 ATLSVSNPQN 39 (221) T ss_dssp EEEEEECCSS T ss_pred EEEEEEECCC T ss_conf 8999995999 No 67 >3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A Probab=29.97 E-value=19 Score=13.24 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.2 Q ss_pred CCCCCCCCCCCEEEEECCCCC Q ss_conf 321235673738998508888 Q gi|254780814|r 489 SFDINKLRYHKIIIMTDADVD 509 (803) Q Consensus 489 ~~~~~~lrY~kiiimtDaD~D 509 (803) .+-+++||.|-++-..|+|.- T Consensus 207 e~gld~LR~GD~VaI~d~D~~ 227 (284) T 3dcl_A 207 DLGVADLKLGDIVAIQDHDNS 227 (284) T ss_dssp GGTSSCCBTTBEEEEEEEECS T ss_pred HHCCCCCCCCCEEEEECCCCC T ss_conf 928773021579999416776 No 68 >1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Probab=29.94 E-value=17 Score=13.46 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=7.6 Q ss_pred CEEEEEECCCCCC Q ss_conf 8399997684453 Q gi|254780814|r 72 GSCTVSDNGRGIP 84 (803) Q Consensus 72 gsisV~dnGrGIP 84 (803) .+++|.|+|.--| T Consensus 18 ~s~~v~N~~~~~p 30 (205) T 1klf_A 18 VQLAVTNNDENST 30 (205) T ss_dssp EEEEEEECCSSCC T ss_pred EEEEEEECCCCCC T ss_conf 8999992999963 No 69 >3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Probab=27.99 E-value=20 Score=13.00 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=11.3 Q ss_pred EEECCC---CEEEEEECCCCCCC Q ss_conf 998389---83999976844536 Q gi|254780814|r 66 VTLNMD---GSCTVSDNGRGIPT 85 (803) Q Consensus 66 V~i~~d---gsisV~dnGrGIPv 85 (803) |.++.+ .+++|.|+|.-.|+ T Consensus 9 vIy~~~~~~~si~l~N~~~~~~~ 31 (224) T 3gfu_C 9 YIFRGDKDALTITVTNNDKERTF 31 (224) T ss_dssp EEEETTSSCEEEEEEECCSSCCE T ss_pred EEECCCCCEEEEEEECCCCCCEE T ss_conf 99858996789999929998338 No 70 >1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1 Probab=27.18 E-value=17 Score=13.53 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88899999999986 Q gi|254780814|r 293 RSALTRQITSYVEK 306 (803) Q Consensus 293 ~~al~~~i~~y~~~ 306 (803) -.||..++++|.+. T Consensus 38 T~ALIda~t~Y~Ka 51 (162) T 1g73_A 38 TYALIEAITEYTKA 51 (162) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 71 >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Probab=26.14 E-value=9.1 Score=15.64 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=7.6 Q ss_pred EEECCCCCCEEEEE Q ss_conf 48311675203778 Q gi|254780814|r 115 KVSGGLHGVGVSVV 128 (803) Q Consensus 115 k~sgGlhGvG~s~v 128 (803) -.|+|=||.++... T Consensus 70 ~aSsGN~g~a~A~~ 83 (303) T 1o58_A 70 EPTSGNMGIAIAMI 83 (303) T ss_dssp EECSSHHHHHHHHH T ss_pred EECCCCHHHHHHHH T ss_conf 80899514799999 No 72 >1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3 Probab=25.85 E-value=21 Score=12.80 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.8 Q ss_pred CCCCCCCCHHHHHHC Q ss_conf 377778895572230 Q gi|254780814|r 739 YKGLGEMNASQLWET 753 (803) Q Consensus 739 YKGLGEMNPeQLWET 753 (803) |+|-||.|=.-|||- T Consensus 392 ~~GfG~gN~~aLf~a 406 (418) T 1sp8_A 392 CGGFGKGNFSQLFKS 406 (418) T ss_dssp TTCSSGGGHHHHHHH T ss_pred CCCCCHHHHHHHHHH T ss_conf 884661189999999 No 73 >1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1 Probab=25.34 E-value=20 Score=13.00 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88899999999986 Q gi|254780814|r 293 RSALTRQITSYVEK 306 (803) Q Consensus 293 ~~al~~~i~~y~~~ 306 (803) -.||..++++|.+. T Consensus 38 T~ALIda~t~Y~Ka 51 (184) T 1few_A 38 TYALIEAITEYTKA 51 (184) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 74 >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} Probab=25.05 E-value=17 Score=13.52 Aligned_cols=13 Identities=15% Similarity=0.657 Sum_probs=6.5 Q ss_pred HCCCHHHHHHHHH Q ss_conf 1110268999987 Q gi|254780814|r 357 ESFVNDGLSAWLE 369 (803) Q Consensus 357 ~~~v~~~l~~~l~ 369 (803) .+.+.+.+..|.. T Consensus 189 ~da~~ea~~~~~~ 201 (418) T 1x1q_A 189 KDATNEAIRDWIT 201 (418) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8999999999985 No 75 >2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens} Probab=24.73 E-value=16 Score=13.66 Aligned_cols=66 Identities=29% Similarity=0.390 Sum_probs=40.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-...+.|-. ..| +++.|.-==.|||.---...++..+|-|+ T Consensus 1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL 70 (90) T 2d99_A 1 GS-SGSSGLRKMVEEVFDVLYSEAL-GRASVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALMAIL 70 (90) T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCSSCCSCCTTTSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7408899999999999999983-8998502787997569760898608999857897646789999999 No 76 >1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1 Probab=23.77 E-value=11 Score=14.99 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=13.4 Q ss_pred ECCCCCCCHHHCCHH-HHHCCHHHHHHHHHHCCC Q ss_conf 005620334430587-663236678888762578 Q gi|254780814|r 452 PLRGKILNVERARFD-KMLSSQEIGTLITALGTG 484 (803) Q Consensus 452 PLrGKilNv~~a~~~-~i~~n~Ei~~l~~~lG~~ 484 (803) ||-=..||.|=--.. |-+ +-|+.-+++||--| T Consensus 146 ~lSPRTLnAWVKvvEeK~f-spEvipmFsALSeg 178 (289) T 1l6n_A 146 AISPRTLNAWVKVVEEKAF-SPEVIPMFSALSEG 178 (289) T ss_dssp CCCHHHHHHHHHHHHHHSS-STTTHHHHHHHTTT T ss_pred CCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHCCC T ss_conf 8997309999999972278-83788889997189 No 77 >2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* Probab=23.54 E-value=20 Score=13.01 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=4.6 Q ss_pred HHCCCEEEECCC Q ss_conf 306762860377 Q gi|254780814|r 730 GRKGISMQRYKG 741 (803) Q Consensus 730 gkKG~sIQRYKG 741 (803) |+..+..-|+|| T Consensus 618 ~~~~~~~k~~k~ 629 (633) T 2gai_A 618 GKGNLSEKRRKG 629 (633) T ss_dssp ------------ T ss_pred CCCCCCCCCCCC T ss_conf 877765135679 No 78 >2dzq_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-066, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=23.01 E-value=19 Score=13.21 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=35.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-...+.|-. ..+ +++.|.-==.|||.---...+++.+|-|+ T Consensus 1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL 70 (99) T 2dzq_A 1 GS-SGSSGLRKQVELLFNTRYAKAI-GISEPVKVPYSKFLMHPEELFVVGLPEGISLRRPNCFGIAKLRKIL 70 (99) T ss_dssp CT-TSCCTHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCSCCTTTSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7408899999999999999983-8998402786996569760898628999857897645789999999 No 79 >3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} Probab=22.84 E-value=24 Score=12.32 Aligned_cols=14 Identities=43% Similarity=0.752 Sum_probs=5.3 Q ss_pred CCCCCCCCCHHHHC Q ss_conf 37633572100202 Q gi|254780814|r 335 PDPRFSSQTKEKLV 348 (803) Q Consensus 335 ~nP~F~gQTK~kL~ 348 (803) |+|.|.++.=++|. T Consensus 7 pd~~~~~~lv~k~i 20 (149) T 3gty_S 7 PDPVFGDVLVAKLI 20 (149) T ss_dssp CCSSSCCHHHHHHH T ss_pred CCCCCCCHHHHHHH T ss_conf 98665878999999 No 80 >2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.76 E-value=18 Score=13.25 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=41.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-...+.|-. ..+ +++.|.-==.|||.---.+.+++.+|-|+ T Consensus 1 gs-sgsSgLRk~Ve~lF~~ky~eAL-G~~~~V~VPY~~~~~~P~~v~V~GLP~gIpFR~P~~ygi~~Le~IL 70 (89) T 2dn5_A 1 GS-SGSSGLREQVKELFNEKYGEAL-GLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYDIHRLEKIL 70 (89) T ss_dssp CC-CSCCCHHHHHHHHHHHHHHHHT-TCSSCCCCCHHHHHHCTTSEEEESCCTTCCCCCSSSCCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7407889999999999999982-8998502776997469760898628999857897645779999999 No 81 >3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A 2ztn_A Probab=22.72 E-value=23 Score=12.57 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=9.9 Q ss_pred EEEEECCCCCCCHHH Q ss_conf 023300562033443 Q gi|254780814|r 448 QAILPLRGKILNVER 462 (803) Q Consensus 448 qai~PLrGKilNv~~ 462 (803) ..+||||||+- +|. T Consensus 426 ~~~lp~~gk~s-~w~ 439 (504) T 3hag_A 426 FFVLPLRGKLS-FWE 439 (504) T ss_dssp EECEEBSSCCE-EEE T ss_pred EEEEECCCCCC-HHH T ss_conf 99843378642-411 No 82 >2ed2_A General transcription factor II-I; unknown function, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=22.67 E-value=19 Score=13.22 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=36.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-..-+.|-. ..+ +++.|.-==.|||.---...+++.+|-|+ T Consensus 1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL 70 (99) T 2ed2_A 1 GS-SGSSGLRKMVDQLFCKKFAEAL-GSTEAKAVPYQKFEAHPNDLYVEGLPENIPFRSPSWYGIPRLEKII 70 (99) T ss_dssp CC-SCCCSHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCCCCTTTSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7408899999999999999982-8998501686996569760898618999857897645789999999 No 83 >2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A Probab=22.63 E-value=25 Score=12.29 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=4.5 Q ss_pred EECCCCCCCC Q ss_conf 8508888532 Q gi|254780814|r 503 MTDADVDGAH 512 (803) Q Consensus 503 mtDaD~DG~H 512 (803) -+.||.=||| T Consensus 84 tCeADtlGS~ 93 (105) T 2ea9_A 84 TCEADTLGSC 93 (105) T ss_dssp EEEEECTTCS T ss_pred EEECCCCCCC T ss_conf 8874678775 No 84 >2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=22.45 E-value=18 Score=13.32 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=35.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-...+.|-. ..+ +++.|.-==.|||.---...+++.+|-|+ T Consensus 1 gs-sgsSgLRk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLP~gI~FR~P~~ygi~~Le~IL 70 (99) T 2dn4_A 1 GS-SGSSGLRKQVEELFERKYAQAI-KAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERIL 70 (99) T ss_dssp CC-CCSSCHHHHHHHHHHHHHHHHT-TCCSCCCCCHHHHHHTTTTEEEESCCTTCCSSCTTTSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7408899999999999999983-8998402786996569760898628999857897645789999999 No 85 >2pp6_A Gifsy-2 prophage ATP-binding sugar transporter- like protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2 Probab=21.63 E-value=26 Score=12.14 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=28.5 Q ss_pred CCCCCCEEEEEEECCCEEEE----EEEECCEEEEE---EEECCEECCCCEE Q ss_conf 11675203778632644999----99978959999---9889836463138 Q gi|254780814|r 118 GGLHGVGVSVVNALSSWLKL----RIKREGNIYEM---SFINGILDNPLVV 161 (803) Q Consensus 118 gGlhGvG~s~vNalS~~~~v----~v~rdgk~~~q---~f~~g~~~~~l~~ 161 (803) |.+||-|.+||-+ |.-+.= .|..+|+.|.. .+.||++.--+++ T Consensus 46 g~l~G~~~sLvvF-SsgYkPrr~D~Vv~~Gk~y~Vtr~~~~NGK~~i~lE~ 95 (102) T 2pp6_A 46 GPVEGNGKNVVVF-SGNVIPRRGDRVVLRGSEFTVTRIRRFNGKPQLTLEE 95 (102) T ss_dssp ------CEEEEEC-CSSCCCCTTCEEEETTEEEEEEEEEEETTEEEEEEEE T ss_pred CCCCCCCEEEEEE-CCCCCCCCCCEEEECCCEEEEEEEEEECCCEEEEEEE T ss_conf 7755770699996-6885468898789748689998898558968999973 No 86 >2bez_F E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 Probab=21.55 E-value=15 Score=13.89 Aligned_cols=13 Identities=46% Similarity=0.808 Sum_probs=5.3 Q ss_pred CCCCCCEEEEEEE Q ss_conf 1167520377863 Q gi|254780814|r 118 GGLHGVGVSVVNA 130 (803) Q Consensus 118 gGlhGvG~s~vNa 130 (803) ||++|..|||||+ T Consensus 8 ~~~~~inasvv~i 20 (42) T 2bez_F 8 GDISGINASVVNI 20 (42) T ss_dssp CCCTTCCCCCCCC T ss_pred CCCCCCCHHHHHH T ss_conf 5425653678649 No 87 >1u1i_A INO1, MIPS, MYO-inositol-1-phosphate synthase; NAD cofactor, metal IONS, isomerase; HET: NAD; 1.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.2.1.3 d.81.1.3 Probab=20.77 E-value=24 Score=12.35 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=21.3 Q ss_pred EEEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH Q ss_conf 22224621666772103568889999999998624200012357613430 Q gi|254780814|r 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 (803) Q Consensus 274 ~SfvN~I~T~~GGtHv~gf~~al~~~i~~y~~~~~~~Kk~k~~~~~~Dir 323 (803) .+|||++|+. ++-+-++ .+.++ +..+-+.|+|++ T Consensus 194 ~~fVN~~P~~--~a~~Pal--------~ela~------~~gvpi~GdD~K 227 (392) T 1u1i_A 194 LPYANFTPSP--GSAIPAL--------KELAE------KKGVPHAGNDGK 227 (392) T ss_dssp CCEEECSSSC--TTCSHHH--------HHHHH------TTTCEEEESSBC T ss_pred CCEECCCCCC--CCCCHHH--------HHHHH------HCCCCEECCCCC T ss_conf 9765356741--5788899--------99998------549977667766 No 88 >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell adhesion; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Probab=20.69 E-value=18 Score=13.26 Aligned_cols=37 Identities=30% Similarity=0.472 Sum_probs=26.0 Q ss_pred HHHHHCCCEEEEC---CCCCCCCHHHHHHCCCCHHHCEEE Q ss_conf 9863067628603---777788955722303896134021 Q gi|254780814|r 727 FSIGRKGISMQRY---KGLGEMNASQLWETTLNPDTRSLL 763 (803) Q Consensus 727 ~~~gkKG~sIQRY---KGLGEMNPeQLWETTMDP~tRtLL 763 (803) +..|.+|++|... -|-|||-...||-|.=-+..-+|| T Consensus 509 ~~~~~~g~~~~~v~~~~g~~~~~~~~~w~~~~~~~~~~~~ 548 (634) T 1yo8_A 509 RAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTL 548 (634) T ss_dssp CCEECSEEEEEEEECSSCTTHHHHHHHHSSSCBTTTEEEE T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCHHHHH T ss_conf 0136663389987368786276543132027852010000 No 89 >2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=20.56 E-value=21 Score=12.88 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=34.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-...+.|-. ..+ +++.|.-==.|||.---...+++.+|-|+ T Consensus 1 gs-sgsSgLrk~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~Le~IL 70 (99) T 2dzr_A 1 GS-SGSSGLREQVQDLFNKKYGEAL-GIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERIL 70 (99) T ss_dssp CC-CCCCSHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCSSSEEEESCCTTCCSSCGGGSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7407899999999999999981-8998401786996569760898628999857897646889999999 No 90 >1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1 Probab=20.26 E-value=24 Score=12.37 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=34.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEE Q ss_conf 327996325445656755578868607797579998---389-83999976844536407778850012564 Q gi|254780814|r 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL---NMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 (803) Q Consensus 33 G~t~~~~Gl~hlv~EiidNsvDe~~~g~~~~I~V~i---~~d-gsisV~dnGrGIPv~~h~~~~~~~~E~i~ 100 (803) || ++..||+..|.|+..-..-||+ |-..-+.|-. ..+ +++.|.-==.|||.---...+++.+|-|+ T Consensus 1 gs-sgsSgLR~~VeelF~~ky~eAL-G~~~~V~VPY~k~~~~P~~v~V~GLPegI~FR~P~~ygi~~LekIL 70 (99) T 1q60_A 1 GS-SGSSGLKQKVENLFNEKCGEAL-GLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLEKIL 70 (99) T ss_dssp CC-CCCSHHHHHHHHHHHHHHHHHH-TCSSCCCCCHHHHHHCTTTEEEESCCTTCCSCCTTTSCHHHHHHHH T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98-7408899999999999999983-8998503786997569761898618999857897646789999999 Done!