BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] (803 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|260431693|ref|ZP_05785664.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415521|gb|EEX08780.1| DNA gyrase, B subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 805 Score = 978 bits (2528), Expect = 0.0, Method: Composition-based stats. Identities = 461/805 (57%), Positives = 592/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS++ Q N Y A+SI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEDAQANQEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHFARFERGETVEHLKVVGECGDRTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L+D+R E E +FY+GG++ FV YLDR Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILVDERPAERLETELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P M PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R+ALTR Sbjct: 241 KTPAMPEPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRAALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGM 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLAEWFEENPNEAKTIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELFLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+MLSSQEIG L+ Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +L+DYLINQ + + S I DL +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAALDDYLINQGIEGAVL-RLGSGEEIVGQDLARVVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAARLDQIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y +L+ I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEVYSLPATLVRRDRVQVIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLDLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|99079848|ref|YP_612002.1| DNA gyrase subunit B [Ruegeria sp. TM1040] gi|99036128|gb|ABF62740.1| DNA gyrase subunit B [Ruegeria sp. TM1040] Length = 805 Score = 972 bits (2512), Expect = 0.0, Method: Composition-based stats. Identities = 459/805 (57%), Positives = 593/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N Q + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSENEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TVT++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADRVTVTIHADSSVSVSDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLTVVGDCGDRTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I + D+R E E +FY+GG+ FV YLDR Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIVVADERPAERLESELFYEGGVNEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M +PI I+G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPVMDAPIYIKGEKDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INSYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ W EE+P AK +V K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MGEKLAEWFEENPNVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+MLSSQEIG L+ Sbjct: 421 KDPAKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLSSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +++DYLINQ + + D I+ DL +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAAMDDYLINQGVDGALLRLGDGSE-IAGQDLTRVVDEARRLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 L+ F ++ + +EQA I+G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 LLDAFPTHYPRHILEQAAIAGAFVPGAVDADLQGVADKVAARLDLIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y +L + I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGAPATLHRKDRQQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLDLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMIEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] gi|254040491|gb|ACT57287.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 803/803 (100%), Positives = 803/803 (100%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY Sbjct: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL Sbjct: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD Sbjct: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK Sbjct: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI Sbjct: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV Sbjct: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER Sbjct: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA Sbjct: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP Sbjct: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL Sbjct: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS Sbjct: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC Sbjct: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL Sbjct: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 Query: 781 MGDEVEPRREFIQENSLPSALDI 803 MGDEVEPRREFIQENSLPSALDI Sbjct: 781 MGDEVEPRREFIQENSLPSALDI 803 >gi|259417608|ref|ZP_05741527.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B] gi|259346514|gb|EEW58328.1| DNA gyrase, B subunit [Silicibacter sp. TrichCH4B] Length = 805 Score = 970 bits (2507), Expect = 0.0, Method: Composition-based stats. Identities = 459/805 (57%), Positives = 592/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N Q + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSENEQAPTEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TVT++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADRVTVTIHADSSVSVSDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTVKHLAVVGDCGDRTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I + D+R E E +FY+GG+ FV YLDR Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIVVTDERPAERLESELFYEGGVNEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M +PI I+G +D+I I++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPVMDAPIYIKGEKDDIGIEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ W EE+P AK +V K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MGEKLAEWFEENPHVAKQVVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++E+YLINQ + I D I+ DL +D+A ++++ Sbjct: 541 PLYKVSRGKSEVYLKDQAAMEEYLINQGVDGAILRLGDGSE-IAGQDLTRVVDEARRLNR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 L+ F ++ + +EQA I+G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 LLDAFPTHYPRHILEQAAIAGAFVPGAVDSDLQGVADKVATRLDLIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y L + I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGAPAVLHRKDRQQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLDLLKAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMIEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|254511739|ref|ZP_05123806.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11] gi|221535450|gb|EEE38438.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium KLH11] Length = 805 Score = 969 bits (2506), Expect = 0.0, Method: Composition-based stats. Identities = 461/805 (57%), Positives = 590/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS++ Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEDAQAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFEGGETAEHLKVVGECGDRTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS ++ +DTL+ RLREL+FLNS V+I LID+R E E +FY+GG++ FV YLDR Sbjct: 181 NTFSNLEYAFDTLEKRLRELAFLNSGVRIILIDERPAERLETELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P M PI I+G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPAMSDPIYIKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MNEKLAEWFEENPNEAKGIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+MLSSQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +L+DYLINQ + + + +I DL +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAALDDYLINQGVEGAVLKLGSGEEII-GQDLTRVVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAARLDLIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y T +LI I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEVYNTPATLIRRDRMQAIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLDLLRAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|260574430|ref|ZP_05842434.1| DNA gyrase, B subunit [Rhodobacter sp. SW2] gi|259023326|gb|EEW26618.1| DNA gyrase, B subunit [Rhodobacter sp. SW2] Length = 805 Score = 969 bits (2504), Expect = 0.0, Method: Composition-based stats. Identities = 458/805 (56%), Positives = 591/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + + +YDADSI++L+GL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEAAKTTPTYDADSIKVLRGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A ++V ++ DGS +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HATAVSVKIHADGSVSVRDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LR+ R G Y F++G L + G A GTEV FL S Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEYFAKFVHGDTVEHLRIVGDAPGQKGTEVRFLASL 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS D+ + TL++RLREL+FLNS V+I L D+R EP + + Y+GG+ FV YLDR Sbjct: 181 QTFSNLDYVFKTLENRLRELAFLNSGVKIVLEDERPAEPLKTELMYEGGVREFVRYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G R I++++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR Sbjct: 241 KSSIMADPIYIIGERAGITVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +K++K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 INNYAQSSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P AKIIV K+++A++ R+AAR+ARDLTRRK LD+ASLPGKLADC E Sbjct: 361 VNEKLAEWFEENPANAKIIVGKIIEAALAREAARKARDLTRRKTALDVASLPGKLADCQE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP KSELFLVEGDSAGGSAKQGRSR NQA+LPL+GKILNVERARFD+ML+SQEIGTLIT Sbjct: 421 RDPAKSELFLVEGDSAGGSAKQGRSRANQAVLPLKGKILNVERARFDRMLASQEIGTLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP +I G+LYI +P Sbjct: 481 ALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQVIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +LEDYL+ + + I+ DL I+ A + + Sbjct: 541 PLYKVARGKSEVYLKDQAALEDYLVQMGVDGAVLRLGT-GEDIAGADLARVIEGARQFRR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA ++G F+ + ++A +A RL+ +A + E+ W G I Sbjct: 600 VLEAFPTHYPRHILEQAALAGAFDPGRAESDLQAVADTVARRLDAVALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G+ + S ++ S + Y+T L+ + I G Sbjct: 660 DHGIRLSRILRGVEELRTLDGAVLRSGEARRLSQVSATTRDVYVTPARLVRKDREQLIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I + G KG+++QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D ++ADD+F+ Sbjct: 720 PIELLKAILAEGEKGLTLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAEADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804 >gi|254477019|ref|ZP_05090405.1| DNA gyrase, B subunit [Ruegeria sp. R11] gi|214031262|gb|EEB72097.1| DNA gyrase, B subunit [Ruegeria sp. R11] Length = 805 Score = 968 bits (2503), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +VSDNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADRVVVKIHADSSVSVSDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLTVVGDCGDQTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L D+R E +FY+GG++ FV YLDR Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKLTAELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M +P+ I G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPVMDAPVYITGEKDDIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ W EE+P EAK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VGEKLAEWFEENPNEAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +L++YLINQ + + S + DL +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAALDEYLINQGVEGAVLKLG-SGEELVGQDLTRVVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVPGAVDSNLQGVADKVAARLDAIALEYERGWSGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+N ++E Y T +L+ I G Sbjct: 660 DHGIRLSRILRGVEELRTLDGPMLRSGEARKTGSFTNSLQEIYGTTATLVRRDRAQTIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLGLLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|254465523|ref|ZP_05078934.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I] gi|206686431|gb|EDZ46913.1| DNA gyrase, B subunit [Rhodobacterales bacterium Y4I] Length = 805 Score = 967 bits (2500), Expect = 0.0, Method: Composition-based stats. Identities = 454/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R+G + F G L V G G+ TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTVKHLEVVGDCGDRTGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L D+R E ++Y+GG+ FV YLDRH Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKITAELYYEGGVREFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M +P+ I G +D I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPVMDAPVYIVGEKDYIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+MLSSQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLSSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +L+DYLINQ + + D I+ DL +D+A ++ + Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLINQGVDGALLKLGDGSE-IAGADLTRVVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDSDLQGVADKVATRLDAIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y L+ I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEIYGATAQLVRRDRSQLIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLGLLQAILEEGEKGLTLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|126738622|ref|ZP_01754327.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6] gi|126720421|gb|EBA17127.1| DNA gyrase subunit B [Roseobacter sp. SK209-2-6] Length = 805 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 590/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N Q+ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSENEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVKIHADSSVSVGDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAKHLEVVGDCGDRTGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L D+R E +FY GG++ FV YLDRH Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVRIILEDERPAEKLTAELFYDGGVKEFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M++P+ I G +D+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTPVMEAPVYIVGEKDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MGEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PL+ + RGKS Y+KD+ +L+DYLINQ + + + I+ DL +D+A ++ + Sbjct: 541 PLFKVARGKSEVYLKDQAALDDYLINQGVDGAVLKLGNGSE-IAGADLTRIVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDSDLQGVADKVAQRLDAIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y T LI I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQEIYGTTGQLIRRDRVQMIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLDLLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|153212956|ref|ZP_01948550.1| DNA gyrase, subunit B [Vibrio cholerae 1587] gi|124116182|gb|EAY35002.1| DNA gyrase, subunit B [Vibrio cholerae 1587] Length = 805 Score = 966 bits (2498), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + A +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWAQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|323493784|ref|ZP_08098902.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546] gi|323311918|gb|EGA65064.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546] Length = 805 Score = 966 bits (2496), Expect = 0.0, Method: Composition-based stats. Identities = 410/812 (50%), Positives = 550/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DKTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I LID+R E + ++GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L +S L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALSGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + + + + + + E D + L +LN E Sbjct: 594 LVDRMSRRYPRALVHELIYTPRLTAEQCHDAAAVEAWTKTLVEQLNAKEVGASQYSVEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S V GV + VL I S S +E + Sbjct: 654 QHAELGLSLPKVVVRTHGVTHEHVLSIDLINSKEYGKLATLSEALEGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFVDALEWLIKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|229530199|ref|ZP_04419588.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)] gi|229332332|gb|EEN97819.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)] Length = 805 Score = 965 bits (2494), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|254225547|ref|ZP_04919156.1| DNA gyrase, subunit B [Vibrio cholerae V51] gi|254291124|ref|ZP_04961921.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226] gi|125621867|gb|EAZ50192.1| DNA gyrase, subunit B [Vibrio cholerae V51] gi|150422969|gb|EDN14919.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226] Length = 805 Score = 965 bits (2494), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|260595833|ref|YP_003208404.1| DNA gyrase subunit B [Cronobacter turicensis z3032] gi|260215010|emb|CBA26674.1| DNA gyrase subunit B [Cronobacter turicensis z3032] Length = 804 Score = 964 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 558/806 (69%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVSDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I++ ++++G+ PL VTG TGT+V F PS + F+ Sbjct: 122 VVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDTE-QTGTQVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L+DKR + + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLVDKRDGK--QDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S I+ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANASAPAIAGEALEKLVSEYNGAQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + +++ + + E D+ S L LN + K + + + Sbjct: 599 RRYPRALLKELIYQPTLSEEMLADEANVTRWVSALITTLNENEQHGSVWKYDIRENAETH 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV ++L+ + + ++ + + + Sbjct: 659 RFEPVVRVRTHGVDTDYILDHEFVTGGEYRRLCTLGEKLRGLIEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|15640047|ref|NP_062599.1| DNA gyrase subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727887|ref|ZP_01680946.1| DNA gyrase, subunit B [Vibrio cholerae V52] gi|147673680|ref|YP_001218397.1| DNA gyrase subunit B [Vibrio cholerae O395] gi|153819850|ref|ZP_01972517.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457] gi|153821919|ref|ZP_01974586.1| DNA gyrase, subunit B [Vibrio cholerae B33] gi|227080252|ref|YP_002808803.1| DNA gyrase, subunit B [Vibrio cholerae M66-2] gi|229508300|ref|ZP_04397804.1| DNA gyrase subunit B [Vibrio cholerae BX 330286] gi|229508861|ref|ZP_04398352.1| DNA gyrase subunit B [Vibrio cholerae B33] gi|229517132|ref|ZP_04406578.1| DNA gyrase subunit B [Vibrio cholerae RC9] gi|229606574|ref|YP_002877222.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236] gi|254851580|ref|ZP_05240930.1| DNA gyrase subunit B [Vibrio cholerae MO10] gi|255746803|ref|ZP_05420749.1| DNA gyrase subunit B [Vibrio cholera CIRS 101] gi|262155882|ref|ZP_06029004.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1] gi|262167103|ref|ZP_06034818.1| DNA gyrase subunit B [Vibrio cholerae RC27] gi|298501200|ref|ZP_07010999.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757] gi|11386840|sp|Q9KVX3|GYRB_VIBCH RecName: Full=DNA gyrase subunit B gi|9654406|gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629831|gb|EAX62246.1| DNA gyrase, subunit B [Vibrio cholerae V52] gi|126509611|gb|EAZ72205.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457] gi|126520539|gb|EAZ77762.1| DNA gyrase, subunit B [Vibrio cholerae B33] gi|146315563|gb|ABQ20102.1| DNA gyrase, subunit B [Vibrio cholerae O395] gi|227008140|gb|ACP04352.1| DNA gyrase, subunit B [Vibrio cholerae M66-2] gi|227011982|gb|ACP08192.1| DNA gyrase, subunit B [Vibrio cholerae O395] gi|229346195|gb|EEO11167.1| DNA gyrase subunit B [Vibrio cholerae RC9] gi|229354136|gb|EEO19068.1| DNA gyrase subunit B [Vibrio cholerae B33] gi|229354573|gb|EEO19495.1| DNA gyrase subunit B [Vibrio cholerae BX 330286] gi|229369229|gb|ACQ59652.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236] gi|254847285|gb|EET25699.1| DNA gyrase subunit B [Vibrio cholerae MO10] gi|255735560|gb|EET90959.1| DNA gyrase subunit B [Vibrio cholera CIRS 101] gi|262024489|gb|EEY43175.1| DNA gyrase subunit B [Vibrio cholerae RC27] gi|262030334|gb|EEY48976.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1] gi|297540072|gb|EFH76134.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757] Length = 805 Score = 964 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGETE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|229520187|ref|ZP_04409614.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80] gi|229342781|gb|EEO07772.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80] Length = 805 Score = 964 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGFIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|153826434|ref|ZP_01979101.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2] gi|229515946|ref|ZP_04405403.1| DNA gyrase subunit B [Vibrio cholerae TMA 21] gi|149739820|gb|EDM54015.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2] gi|229347046|gb|EEO12008.1| DNA gyrase subunit B [Vibrio cholerae TMA 21] Length = 805 Score = 964 bits (2493), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I LID+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|254461194|ref|ZP_05074610.1| DNA gyrase, B subunit [Rhodobacterales bacterium HTCC2083] gi|206677783|gb|EDZ42270.1| DNA gyrase, B subunit [Rhodobacteraceae bacterium HTCC2083] Length = 805 Score = 964 bits (2492), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 589/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ QN+ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSETEQNNAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS+WL+LRI R+G + F +G L V G AG TGTEV FL S Sbjct: 121 LHGVGVSVVNALSNWLELRIWRDGKEHVARFEHGDTAEHLKVVGDAGERTGTEVRFLASL 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS ++ +DTL+ RLREL+FLNS V+I L D+R EP ++Y GG++ FV YLDR Sbjct: 181 DTFSNLEYVFDTLEKRLRELAFLNSGVRIILEDERPAEPLRTELYYDGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M P+ + G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSSIMPEPVYMIGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 301 INNYAASSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P EAKIIV K+++A+ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLAEWFEENPNEAKIIVGKIIEAAHAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFDKML+SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDKMLNSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +++YLI Q + + + I+ DLR +++A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAEMDEYLIEQGIDGAVL-RQGNGEEINGQDLRRIVNEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + A ++A RLN IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVPGVVDQDLQGTADRVAERLNLIALEYEQGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ +++ Y +LI I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQSLQDVYNLPATLIRKDRNQMIFG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VKI D ++ADDLF+ Sbjct: 720 PLDLLSAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKINDVAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDIVEPRREFIQQNALNVENLD 804 >gi|156936079|ref|YP_001439995.1| DNA gyrase subunit B [Cronobacter sakazakii ATCC BAA-894] gi|156534333|gb|ABU79159.1| hypothetical protein ESA_03973 [Cronobacter sakazakii ATCC BAA-894] Length = 804 Score = 964 bits (2492), Expect = 0.0, Method: Composition-based stats. Identities = 411/806 (50%), Positives = 558/806 (69%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVSDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I++ ++++G+ PL VTG + TGT+V F PS + F+ Sbjct: 122 VVNALSQKLELVIRREGKIHQQTYVHGVPQAPLAVTGDT-DQTGTQVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L+DKR + + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRDGK--QDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S I+ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPAIAGEALEKLVSEYNGAQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + +++ + + E+ D+ S L LN + K + + Sbjct: 599 RRYPRALLKELIYQPTLSEETLADEANVTRWVSALITTLNDNEQHGSVWKYDIRENAETR 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV +VL+ + + ++ + + + Sbjct: 659 RFEPVVRVRTHGVDTDYVLDHEFVTGGEYRRLCTLGEKLRGLIEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|153802491|ref|ZP_01957077.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3] gi|124121961|gb|EAY40704.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3] Length = 805 Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 554/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I LID+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|121587244|ref|ZP_01677017.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80] gi|121548490|gb|EAX58546.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80] Length = 805 Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEEAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|86139413|ref|ZP_01057982.1| DNA gyrase subunit B [Roseobacter sp. MED193] gi|85823916|gb|EAQ44122.1| DNA gyrase subunit B [Roseobacter sp. MED193] Length = 805 Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats. Identities = 458/805 (56%), Positives = 591/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSDN Q+ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L Sbjct: 1 MSDNEQSPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +V DNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVRVTIHADSSVSVYDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G L V G G+ TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L D+R E E +FY+GG++ FV YLDR Sbjct: 181 DTFSNLEYSFETLEKRLRELAFLNSGVKIILADERPAERLESELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M SP+ I G +D+I +++AM WND YHE+VL FTNNIPQ+DGGTHL+G R ALTR Sbjct: 241 KTPVMDSPVYITGEKDDIGVEVAMWWNDSYHESVLPFTNNIPQRDGGTHLAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLAEWFEENPNQAKQIVGKIVEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +L+DYLI+Q + S + DL +++A ++ + Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLIHQGVEGATLKLG-SGEELVGQDLTRVVEEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A ++A RL+ IA + EK W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADRVAARLDLIALEYEKGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y T L+ I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTKSLQEVYRTSGQLLRRDRAQAIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D ADDLF+ Sbjct: 720 PLDLLKAIMEEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVDDLVGADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|163738140|ref|ZP_02145556.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107] gi|163743742|ref|ZP_02151116.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10] gi|161383003|gb|EDQ07398.1| DNA gyrase subunit B [Phaeobacter gallaeciensis 2.10] gi|161388756|gb|EDQ13109.1| DNA gyrase, B subunit [Phaeobacter gallaeciensis BS107] Length = 805 Score = 963 bits (2490), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 592/805 (73%), Gaps = 4/805 (0%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSGNEQAPAEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +V+DNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADRVVVKIHADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R+G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS ++ ++TL+ RLREL+FLNS V+I LID+R E E+ +FY+GG++ FV YLDR Sbjct: 181 DTFSNLEYLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M++PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSPVMEAPIYITGDRDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P +AK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +L++YLINQ + + S + DL +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAALDEYLINQGVDGAVLKLG-SGEELVGQDLARVVDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADKVAQRLDLIALEYERGWRGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+N ++E Y +L+ I G Sbjct: 660 DHGIRLSRILRGVEELRTLDGPMLRSGEARKTGSFTNSLQETYGATATLVRRDRSQAIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADDLF+ Sbjct: 720 PLGLLKAILEEGEKGLALQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMVEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQKNALSVENLD 804 >gi|251793709|ref|YP_003008439.1| DNA gyrase subunit B [Aggregatibacter aphrophilus NJ8700] gi|247535106|gb|ACS98352.1| DNA gyrase, B subunit [Aggregatibacter aphrophilus NJ8700] Length = 806 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 415/810 (51%), Positives = 552/810 (68%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSTNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G PL V G N TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPKAPLAVIGET-NQTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YDTL RLRELSFLNS V I L+D+R+ + Y+GGI+AFV Y++R K Sbjct: 179 IFTNIEFEYDTLAKRLRELSFLNSGVSIRLVDERNGKE--DHFHYEGGIQAFVEYINRGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR + Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P + KIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQTYLLENPNDVKIIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ ++ + +L + + L N D L I KL Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVSEHAPAMQGLPLENLASDYLGIQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEK-----SEKSW 653 I + ++ +++ + N + Q+ + S A L L + Sbjct: 597 IARLSRYYPESLLKELIYQPALNVQFMQDESAVNSWAGSLVASLTAKETDGKHYSYRLQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 +G + ++++ G+ + L I ++ T ++ K Sbjct: 657 NGERHIHEVVLTVRTHGIDIDYFLNFPFITGNEYARLTALGAKLVGLLETNAYVMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T +D + R+G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA A Sbjct: 717 QAVTSFEQAIDWLMKESRRGLLIQRYKGLGEMNPEQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806 >gi|258622961|ref|ZP_05717976.1| DNA gyrase, subunit B [Vibrio mimicus VM573] gi|258626085|ref|ZP_05720936.1| DNA gyrase, subunit B [Vibrio mimicus VM603] gi|258581611|gb|EEW06509.1| DNA gyrase, subunit B [Vibrio mimicus VM603] gi|258584744|gb|EEW09478.1| DNA gyrase, subunit B [Vibrio mimicus VM573] Length = 805 Score = 962 bits (2487), Expect = 0.0, Method: Composition-based stats. Identities = 404/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N + +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V+ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKVQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + R+G+S+QRYKGLGEMN QLWETT++PDTR +++V I DA AD+LF+ Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|262172781|ref|ZP_06040459.1| DNA gyrase subunit B [Vibrio mimicus MB-451] gi|261893857|gb|EEY39843.1| DNA gyrase subunit B [Vibrio mimicus MB-451] Length = 805 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N + +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + R+G+S+QRYKGLGEMN QLWETT++PDTR +++V I DA AD+LF+ Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|261250636|ref|ZP_05943211.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891] gi|260939205|gb|EEX95192.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891] Length = 805 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 406/812 (50%), Positives = 549/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+ + ++ +G PL V G + TGT++ F PS + Sbjct: 116 HGVGVSVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVGDT-DKTGTQIRFWPSGE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L D+R E + ++GGI+AFV +L+ +K Sbjct: 175 TFTNTEFHYDILAKRLRELSFLNSGVSIMLKDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L +S L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNAALHVNPEAPALSGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + + + + + + E D + + +L +LN E Sbjct: 594 LVDRMSRRYPRALVHELIYTPRLTAEQCHDASLVDAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + VL I S S +E + Sbjct: 654 QHAELGLSLPKIVVRTHGVTHEHVLSIDLINSKEYGKLASLSEALEGLIEDGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSRFVEALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|262166787|ref|ZP_06034524.1| DNA gyrase subunit B [Vibrio mimicus VM223] gi|262026503|gb|EEY45171.1| DNA gyrase subunit B [Vibrio mimicus VM223] Length = 805 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIHRGGKIHSQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N + +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + R+G+S+QRYKGLGEMN QLWETT++PDTR +++V I DA AD+LF+ Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|261213260|ref|ZP_05927542.1| DNA gyrase subunit B [Vibrio sp. RC341] gi|262402079|ref|ZP_06078643.1| DNA gyrase subunit B [Vibrio sp. RC586] gi|260837534|gb|EEX64237.1| DNA gyrase subunit B [Vibrio sp. RC341] gi|262351725|gb|EEZ00857.1| DNA gyrase subunit B [Vibrio sp. RC586] Length = 805 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLSDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N + +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S ++ + I+ Sbjct: 660 VYLPKIQVRTHGVTHEYLLSADLINSKEYAKLAELSEALDGLIEAGAFIKRGERVQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + R+G+S+QRYKGLGEMN QLWETT++PDTR +++V I DA AD+LF+ Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|229524916|ref|ZP_04414321.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426] gi|229338497|gb|EEO03514.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426] Length = 805 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 553/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVI 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G I+ ++ +G+ PL V G TGT V F PS+ F+ + Sbjct: 122 VVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVGDTE-RTGTTVRFWPSAQTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++ Sbjct: 240 VFHFNQEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 300 KEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y + ++ ++ L + KL++ Sbjct: 540 KGKQEQYIKDEDAMNQYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + N E +D+ + +L +LN + + + +N Sbjct: 600 RRYPYAMLHELIYVPRINAELCADKAAVEAWTQRLVEQLNAKEVGASQYSVAIEHNVELN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ GV +++L I S S +E + I+ Sbjct: 660 VYLPKIQVRTHGVSHEYLLSADLINSKEYAKLADLSEALEGLIEAGAFIKRGERMQPISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALEWLIKESRRGLSIQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIETNALKVANLDV 805 >gi|153835131|ref|ZP_01987798.1| DNA gyrase, B subunit [Vibrio harveyi HY01] gi|148868403|gb|EDL67517.1| DNA gyrase, B subunit [Vibrio harveyi HY01] Length = 805 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L+D+R + ++GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESS 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + E D + +L +LN E Sbjct: 594 LADRMSRRYPSALVHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + L + S S ++ + Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ S L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|269962694|ref|ZP_06177039.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3] gi|269832617|gb|EEZ86731.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3] Length = 805 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L+D+R + ++GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + E D + +L +LN E Sbjct: 594 LADRMSRRYPSALVHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + L + S S ++ + Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ S L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|159045895|ref|YP_001534689.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12] gi|157913655|gb|ABV95088.1| DNA gyrase subunit B [Dinoroseobacter shibae DFL 12] Length = 805 Score = 961 bits (2483), Expect = 0.0, Method: Composition-based stats. Identities = 461/805 (57%), Positives = 588/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAETAQVAEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVKIHADSSVSVSDNGRGIPVGVHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R+G + F +G L V G AG+ TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHVARFEHGDTVKHLEVIGDAGDRTGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS D+++ TL++RLREL+FLNS V+I L D+R EP +FY+GG+ FV YLDR Sbjct: 181 GTFSNLDYSFKTLENRLRELAFLNSGVRIILEDERPAEPLRSELFYEGGVREFVRYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K M+ PI I G RD+I I++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR Sbjct: 241 KTSAMEEPIFITGERDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 INAYAQSSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L W EE+P +AK+IV K+++A++ R+AAR+AR+LTRRK +D+ASLPGKLADC E Sbjct: 361 VNEKLGEWFEENPAQAKVIVGKIIEAALAREAARKARELTRRKTAMDVASLPGKLADCQE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SELFLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+MLSSQEIGTLIT Sbjct: 421 KDPAHSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLSSQEIGTLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP +I G+LYI +P Sbjct: 481 ALGTGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPEIIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +LED+LI Q + + I+ DL +D A + + Sbjct: 541 PLYKVARGKSEVYLKDQAALEDHLIGQGIEGAVL-RLPGGEEIAGKDLARVVDAARQFKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F+ +A ++A RL+ +A + E+ W G I Sbjct: 600 ILDAFPTHYPRPILEQAALAGAFDPGKADADLQKVADQVAARLDLVAVEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + R+ RGV+E L+G+ + S ++ S + Y L+ ++ I G Sbjct: 660 DHGIRLSRVLRGVEEIRTLDGAVLRSGEARKLASVSTESRDVYQDPAKLVRKEREVSIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LL TI G KG S+QRYKGLGEMN QLWETTL+P+ R+LL+V+I D + ADD+F+ Sbjct: 720 PLALLSTILEEGEKGQSLQRYKGLGEMNPDQLWETTLDPEARTLLQVQIEDLADADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRR FIQ+N+L LD Sbjct: 780 KLMGDVVEPRRAFIQQNALSVENLD 804 >gi|1546916|emb|CAA69221.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 804 Score = 960 bits (2482), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 552/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|27364430|ref|NP_759958.1| DNA gyrase subunit B [Vibrio vulnificus CMCP6] gi|37678198|ref|NP_932807.1| DNA gyrase subunit B [Vibrio vulnificus YJ016] gi|320157813|ref|YP_004190192.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O] gi|27360549|gb|AAO09485.1| DNA gyrase, B subunit [Vibrio vulnificus CMCP6] gi|37196937|dbj|BAC92778.1| DNA gyrase, subunit B [Vibrio vulnificus YJ016] gi|319933125|gb|ADV87989.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O] Length = 805 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G+ + ++ +G+ D PL + G TGT V F PS++ F+ + Sbjct: 122 VVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIGDTE-KTGTTVRFWPSAETFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++ Sbjct: 240 VFHFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VESF+ D L+ Sbjct: 300 KEGYSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESFMADKLN 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAEHPSEAKTVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++ Y I+ +L ++ L + KL+ Sbjct: 540 KGKQEQYIKDEDAMNQYQISLALDNAALHVNPDAPALAGEALEKLVQQYNAAIKLVDRMS 599 Query: 606 PNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIA-----EKSEKSWHGSIN 658 + + I + + + Q + +L +LN E Sbjct: 600 RRYPRALIHELIYVPRLSETQFADQAAMAAWTEQLVTQLNAKEVGASQYSFEIEHDAERG 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + GV ++ L I S + ++ ++ + + Sbjct: 660 LFSPKIVVRTHGVMHEYPLSVDLINSKEYQKLAELADALDGLIEEGAYIQRGERTQPVNS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 S L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR ++RV I DA AD+LF+ Sbjct: 720 FASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMRVTIEDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+EN+L LD+ Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805 >gi|261867418|ref|YP_003255340.1| DNA gyrase subunit B [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412750|gb|ACX82121.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 806 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 408/810 (50%), Positives = 546/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSTNTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G PL V G TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YD L RLRELSFLNS V I LID+R+ + YKGGI+AFV Y++R K Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYKGGIQAFVEYINRGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR + Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P + KIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ ++ + +L +S + L+N + L + K+ Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNESAPGMQGVALQNLASEYLAVQKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653 I + ++ +++ + + S A L LN + Sbjct: 597 IARLTRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVATLNMKETDGRHYSYRLQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + N ++++ G+ + L ++ + ++ K Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFATGSEYTRLIALGEKLVDLLEGSAYVMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + ++ + R+G+ +QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 717 VAVGSFEQAIEWLMRESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806 >gi|170766845|ref|ZP_02901298.1| DNA gyrase, B subunit [Escherichia albertii TW07627] gi|170124283|gb|EDS93214.1| DNA gyrase, B subunit [Escherichia albertii TW07627] Length = 804 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + +++ + L + LN + K + + N Sbjct: 599 RRYPKALLKELIYQPTLAEADLSNEQTVTRWVNALVSELNDKEQHGSQWKFDVHANAEKN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|254507351|ref|ZP_05119487.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16] gi|219549811|gb|EED26800.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16] Length = 805 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 410/812 (50%), Positives = 548/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CQDIVVTIHEDNSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKQDHFMYEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L EHP EAKI+ K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVEHPTEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + + + + + + E D + +L +LN +E Sbjct: 594 LVDRMSRRYPRALVHEFIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYNAEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + VL + S S ++ + Sbjct: 654 QHAELGLSLPKIVVRTHGVTHEHVLSIDLVNSKEYGKLASLSEALDGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVASFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|156972780|ref|YP_001443687.1| DNA gyrase subunit B [Vibrio harveyi ATCC BAA-1116] gi|156524374|gb|ABU69460.1| hypothetical protein VIBHAR_00445 [Vibrio harveyi ATCC BAA-1116] Length = 805 Score = 959 bits (2480), Expect = 0.0, Method: Composition-based stats. Identities = 400/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L+D+R + ++GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNTGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + E D + +L +LN E Sbjct: 594 LADRMSRRYPSALVHELIYTPRLMAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + L + S S ++ + Sbjct: 654 QHEELGLNLPKIIVRTHGVTHDYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ S L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|331649525|ref|ZP_08350611.1| DNA gyrase, B subunit [Escherichia coli M605] gi|330908018|gb|EGH36537.1| DNA gyrase subunit B [Escherichia coli AA86] gi|331042023|gb|EGI14167.1| DNA gyrase, B subunit [Escherichia coli M605] Length = 804 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKALLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|83950587|ref|ZP_00959320.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM] gi|83838486|gb|EAP77782.1| DNA gyrase subunit B [Roseovarius nubinhibens ISM] Length = 805 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 586/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEAAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TVT++ D S +VSDNGRGIP DLH+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVTIHDDSSVSVSDNGRGIPVDLHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G A GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHVARFERGDTAEHLKVVGDANGRKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I L D+R EP E + Y GG++ FV YLDRH Sbjct: 181 DTFSNLEYSFETLERRLRELAFLNSGVRIILRDERPAEPLETELHYDGGVKEFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P++ PI I G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSPMIPEPIFITGERDEIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 INNYAQSSGIAKKEKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ W EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 MNEKLNEWFEENPNEAKMIVGKIIEAALAREAARKARELTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELFLVEGDSAGGSA+ GR R QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIDGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++EDYLI Q + + + I+ DL +++A + + Sbjct: 541 PLYKVSRGKSEVYLKDQAAMEDYLIEQGTDDAMLRLGTGEE-ITGRDLVRVVEEARQAKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +I+ F ++ + +EQA I+G F+ +A +A RL+ IA + E+ W G I Sbjct: 600 IIEAFPTHYPRNIVEQATIAGAFSEGRADADLQGVADAVAARLDLIALEYERGWTGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + R+ RGV+E L+G + S+ + +++ Y T +L+ I G Sbjct: 660 DHGIRLTRMLRGVEEVRTLDGPILRGGESRRIGQMTKVLQDVYRTQATLVRKDRVQAING 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD I G KG+S+QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D ++ADDLF+ Sbjct: 720 PLDLLDAILKEGEKGLSLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVNDVAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQEN+L LD Sbjct: 780 KLMGDVVEPRREFIQENALNVENLD 804 >gi|317046242|ref|YP_004113890.1| DNA gyrase subunit B [Pantoea sp. At-9b] gi|316947859|gb|ADU67334.1| DNA gyrase, B subunit [Pantoea sp. At-9b] Length = 802 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 405/804 (50%), Positives = 545/804 (67%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCSDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G +++ ++++G+ PL V G + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELTIRRDGKVHQQTYVHGVPQAPLAVVGDT-DATGTRVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLEDKRDDKK--DHYHYEGGIKAFVEYLNRNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S + L + + + ++IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLESLVANFNSTQRMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW-----HGSINNS 660 + + + + SD+ L L + N Sbjct: 599 RRYPLALLRALIYHPTLSDLSDEVAVQGWLDGLVAYLTEREAHGSTYVAQVQANREQNLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ I + ++ + + + Sbjct: 659 EPVLRVRTHGVDTDYPLDSEFIAGPEYRKICELGEQLRGLIEEDAFIERGERRQPVASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802 >gi|26250440|ref|NP_756480.1| DNA gyrase subunit B [Escherichia coli CFT073] gi|91213221|ref|YP_543207.1| DNA gyrase subunit B [Escherichia coli UTI89] gi|237703499|ref|ZP_04533980.1| subunit B [Escherichia sp. 3_2_53FAA] gi|26110870|gb|AAN83054.1|AE016769_169 DNA gyrase subunit B [Escherichia coli CFT073] gi|91074795|gb|ABE09676.1| DNA gyrase subunit B [Escherichia coli UTI89] gi|226902763|gb|EEH89022.1| subunit B [Escherichia sp. 3_2_53FAA] Length = 805 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 409/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I Sbjct: 1 MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 121 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTN 179 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 180 VTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + K +++ + D++ + L + LN + K + + Sbjct: 598 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 N + +V+ GV + L+ I + ++ + + + Sbjct: 658 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD L Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805 >gi|1617217|emb|CAA69665.1| subunit B of DNA gyrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 804 Score = 959 bits (2478), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS QE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSFQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|293390763|ref|ZP_06635097.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951297|gb|EFE01416.1| DNA gyrase, B subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 806 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSTNTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G PLVV G TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLVVIGETT-QTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YD L RLRELSFLNS V I LID+R+ + Y+GGI+AFV Y++R K Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYEGGIQAFVEYINRGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR + Sbjct: 237 TPIHPKSFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSAVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P + KIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ ++ + +L +S + L+N + L + K+ Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNESAPGMQGVALQNLASEYLAVQKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653 I + ++ +++ + + S A L LN + Sbjct: 597 IARLTRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVATLNMKETDGRHYSYRLQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + N ++++ G+ + L ++ ++ K Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFATGSEYTRLIALGEKLVGLLEDSAYVMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + ++ + R+G+ +QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 717 VAVGSFEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNIRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DQLFTTLMGDEVEPRRDFIESNALRANLDI 806 >gi|86355681|ref|YP_467573.1| DNA gyrase subunit B [Rhizobium etli CFN 42] gi|86279783|gb|ABC88846.1| DNA gyrase subunit B protein [Rhizobium etli CFN 42] Length = 811 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 523/806 (64%), Positives = 651/806 (80%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 DI+TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DIVTVTLNPDGSVTVTDNGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A + TGTEV+F+PSS+ Sbjct: 127 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDSTGTEVSFMPSSET 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + ++ M Y GG+EAFVSYLDR KK Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLADKRHSDIKQEEMRYDGGLEAFVSYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL+ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 PLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ W EEHP EAKI+V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + RGKS+QY+KDE++LE+YLI Q L + S V + DLR I DAL++ L+ Sbjct: 547 YKVARGKSVQYLKDEKALEEYLIAQGLEDAAL-RLGSGEVRTGQDLREVILDALRMRALL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + +++ +EQA I+G N E SDQ +LAS++A RL+ IAE++E+ W G + Sbjct: 606 DNLHSRYNRAVVEQAAIAGALNAELVSDQARAQALASEVAGRLDIIAEETERGWQGDLAT 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + ++R+ RGV+E VL+ + I S +++ + R++E Y T SL I+I+G Sbjct: 666 DGGLRLERMVRGVKEVVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+ Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811 >gi|312882232|ref|ZP_07741978.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122] gi|309370076|gb|EFP97582.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122] Length = 805 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 404/812 (49%), Positives = 546/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDNSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R GNI+ ++ +G PL V G +TGTE+ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLGDT-QNTGTEIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I LID+R + ++GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREDDKS-DHFMFEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLAEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK +Y+KDE+++ DY + +L +S L + K Sbjct: 534 PLYKVKKGKQERYIKDEDAMNDYQFSLALENATLHVNAQAPAMSGEALEKLVKQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + + + + + S ++ + +L +LN E Sbjct: 594 LVDRMSRRYPRALMHELIYSPRLTANQCHSEDDVQTWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV ++ L S S + + Sbjct: 654 QHVELGLNLPKIIVRTHGVTHEYALSIDLFNSKEYAKLADLSEALNGLIEEDAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVASFVEALEWLMKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|329297784|ref|ZP_08255120.1| DNA gyrase subunit B [Plautia stali symbiont] Length = 802 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 410/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSNIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G ++ ++++G+ PL VTG + TGT V F PS D F+ Sbjct: 122 VVNALSQKLELIIRRDGKEHQQTYVHGVPQAPLAVTGDT-DATGTRVRFWPSHDTFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+R+KKP+ Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIRLEDKRDDKN--DHYHYEGGIKAFVEYLNRNKKPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ +N+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NVFYFCTEKDGIGVEVALQWNDGFQKNIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y I +L S + L + + + K+IK Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHTNASAPALGGEPLESLVAEYNSTQKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660 + V + SDQ + L LN + + Sbjct: 599 RRFPSALLRALVYHPTLSDLSDQTAVTAWLESLVAYLNEREAHGSSYVAQVRENREQQRF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ I + + + + + Sbjct: 659 EPVLRVRTHGVDTDYPLDSEFIDGAEYRKICALGAHLRGLIEEDAYIERGERRQPVASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIDWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802 >gi|209396545|ref|YP_002273225.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|217325601|ref|ZP_03441685.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|254038916|ref|ZP_04872968.1| conserved hypothetical protein [Escherichia sp. 1_1_43] gi|209157945|gb|ACI35378.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4115] gi|217321822|gb|EEC30246.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. TW14588] gi|226838881|gb|EEH70908.1| conserved hypothetical protein [Escherichia sp. 1_1_43] Length = 805 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 408/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I Sbjct: 1 MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 121 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTN 179 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 180 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + K +++ + D++ + L + LN + K + + Sbjct: 598 MERRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 N + +V+ GV + L+ I + ++ + + + Sbjct: 658 QNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD L Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805 >gi|320193755|gb|EFW68388.1| DNA gyrase subunit B [Escherichia coli WV_060327] Length = 804 Score = 958 bits (2477), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNAMQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|110644042|ref|YP_671772.1| DNA gyrase subunit B [Escherichia coli 536] gi|117625975|ref|YP_859298.1| DNA gyrase subunit B [Escherichia coli APEC O1] gi|191170615|ref|ZP_03032168.1| DNA gyrase, B subunit [Escherichia coli F11] gi|218560774|ref|YP_002393687.1| DNA gyrase subunit B [Escherichia coli S88] gi|218691987|ref|YP_002400199.1| DNA gyrase subunit B [Escherichia coli ED1a] gi|227883920|ref|ZP_04001725.1| DNA gyrase subunit B [Escherichia coli 83972] gi|300983650|ref|ZP_07176691.1| DNA gyrase, B subunit [Escherichia coli MS 200-1] gi|300984543|ref|ZP_07177033.1| DNA gyrase, B subunit [Escherichia coli MS 45-1] gi|301047517|ref|ZP_07194593.1| DNA gyrase, B subunit [Escherichia coli MS 185-1] gi|331660041|ref|ZP_08360979.1| DNA gyrase, B subunit [Escherichia coli TA206] gi|110345634|gb|ABG71871.1| DNA gyrase subunit B [Escherichia coli 536] gi|115515099|gb|ABJ03174.1| DNA gyrase subunit B [Escherichia coli APEC O1] gi|190909423|gb|EDV69009.1| DNA gyrase, B subunit [Escherichia coli F11] gi|218367543|emb|CAR05328.1| DNA gyrase, subunit B [Escherichia coli S88] gi|218429551|emb|CAR10515.2| DNA gyrase, subunit B [Escherichia coli ED1a] gi|227839198|gb|EEJ49664.1| DNA gyrase subunit B [Escherichia coli 83972] gi|294493517|gb|ADE92273.1| DNA gyrase, B subunit [Escherichia coli IHE3034] gi|300300577|gb|EFJ56962.1| DNA gyrase, B subunit [Escherichia coli MS 185-1] gi|300306873|gb|EFJ61393.1| DNA gyrase, B subunit [Escherichia coli MS 200-1] gi|300408376|gb|EFJ91914.1| DNA gyrase, B subunit [Escherichia coli MS 45-1] gi|307555839|gb|ADN48614.1| DNA gyrase subunit B [Escherichia coli ABU 83972] gi|307628775|gb|ADN73079.1| DNA gyrase subunit B [Escherichia coli UM146] gi|315285496|gb|EFU44941.1| DNA gyrase, B subunit [Escherichia coli MS 110-3] gi|315292857|gb|EFU52209.1| DNA gyrase, B subunit [Escherichia coli MS 153-1] gi|323949942|gb|EGB45826.1| hypothetical protein ERKG_03785 [Escherichia coli H252] gi|323955007|gb|EGB50785.1| hypothetical protein ERLG_03725 [Escherichia coli H263] gi|324012740|gb|EGB81959.1| DNA gyrase, B subunit [Escherichia coli MS 60-1] gi|331053256|gb|EGI25289.1| DNA gyrase, B subunit [Escherichia coli TA206] Length = 804 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|256021283|ref|ZP_05435148.1| DNA gyrase subunit B [Shigella sp. D9] gi|331670543|ref|ZP_08371382.1| DNA gyrase, B subunit [Escherichia coli TA271] gi|332282514|ref|ZP_08394927.1| DNA gyrase subunit B [Shigella sp. D9] gi|331062605|gb|EGI34525.1| DNA gyrase, B subunit [Escherichia coli TA271] gi|332104866|gb|EGJ08212.1| DNA gyrase subunit B [Shigella sp. D9] Length = 804 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVRTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|293413153|ref|ZP_06655819.1| hypothetical protein ECEG_04465 [Escherichia coli B354] gi|291468286|gb|EFF10781.1| hypothetical protein ECEG_04465 [Escherichia coli B354] Length = 804 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|170680955|ref|YP_001746027.1| DNA gyrase subunit B [Escherichia coli SMS-3-5] gi|170518673|gb|ACB16851.1| DNA gyrase, B subunit [Escherichia coli SMS-3-5] Length = 804 Score = 958 bits (2476), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + SD++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|331685423|ref|ZP_08386009.1| DNA gyrase, B subunit [Escherichia coli H299] gi|331077794|gb|EGI49006.1| DNA gyrase, B subunit [Escherichia coli H299] Length = 804 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|312967891|ref|ZP_07782103.1| DNA gyrase, B subunit [Escherichia coli 2362-75] gi|312287452|gb|EFR15360.1| DNA gyrase, B subunit [Escherichia coli 2362-75] Length = 804 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNNKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|315296897|gb|EFU56185.1| DNA gyrase, B subunit [Escherichia coli MS 16-3] Length = 804 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + SD++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|15833888|ref|NP_312661.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. Sakai] gi|30065007|ref|NP_839178.1| DNA gyrase subunit B [Shigella flexneri 2a str. 2457T] gi|49176395|ref|YP_026241.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|56480411|ref|NP_709501.2| DNA gyrase subunit B [Shigella flexneri 2a str. 301] gi|74314013|ref|YP_312432.1| DNA gyrase subunit B [Shigella sonnei Ss046] gi|89110314|ref|AP_004094.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. W3110] gi|110807611|ref|YP_691131.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401] gi|157155879|ref|YP_001465184.1| DNA gyrase subunit B [Escherichia coli E24377A] gi|157163179|ref|YP_001460497.1| DNA gyrase subunit B [Escherichia coli HS] gi|168748585|ref|ZP_02773607.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168753588|ref|ZP_02778595.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168759885|ref|ZP_02784892.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168766186|ref|ZP_02791193.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168772266|ref|ZP_02797273.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168779921|ref|ZP_02804928.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168785654|ref|ZP_02810661.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869] gi|168798734|ref|ZP_02823741.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508] gi|170018065|ref|YP_001723019.1| DNA gyrase subunit B [Escherichia coli ATCC 8739] gi|188496243|ref|ZP_03003513.1| DNA gyrase, B subunit [Escherichia coli 53638] gi|191165787|ref|ZP_03027625.1| DNA gyrase, B subunit [Escherichia coli B7A] gi|193063868|ref|ZP_03044955.1| DNA gyrase, B subunit [Escherichia coli E22] gi|193069227|ref|ZP_03050184.1| DNA gyrase, B subunit [Escherichia coli E110019] gi|194428131|ref|ZP_03060675.1| DNA gyrase, B subunit [Escherichia coli B171] gi|194435834|ref|ZP_03067937.1| DNA gyrase, B subunit [Escherichia coli 101-1] gi|195936320|ref|ZP_03081702.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC4024] gi|208808465|ref|ZP_03250802.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208812166|ref|ZP_03253495.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208821994|ref|ZP_03262314.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209921176|ref|YP_002295260.1| DNA gyrase subunit B [Escherichia coli SE11] gi|218556264|ref|YP_002389178.1| DNA gyrase subunit B [Escherichia coli IAI1] gi|218697421|ref|YP_002405088.1| DNA gyrase subunit B [Escherichia coli 55989] gi|238902789|ref|YP_002928585.1| DNA gyrase, subunit B [Escherichia coli BW2952] gi|253771439|ref|YP_003034270.1| DNA gyrase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163650|ref|YP_003046758.1| DNA gyrase subunit B [Escherichia coli B str. REL606] gi|254795702|ref|YP_003080539.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. TW14359] gi|256025570|ref|ZP_05439435.1| DNA gyrase subunit B [Escherichia sp. 4_1_40B] gi|260846516|ref|YP_003224294.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009] gi|260857890|ref|YP_003231781.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368] gi|260870430|ref|YP_003236832.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128] gi|261225852|ref|ZP_05940133.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK2000] gi|261258897|ref|ZP_05951430.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. FRIK966] gi|291285118|ref|YP_003501936.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615] gi|293417172|ref|ZP_06659799.1| hypothetical protein ECDG_04325 [Escherichia coli B185] gi|293464023|ref|ZP_06664437.1| hypothetical protein ECCG_04105 [Escherichia coli B088] gi|300815054|ref|ZP_07095279.1| DNA gyrase, B subunit [Escherichia coli MS 107-1] gi|300824316|ref|ZP_07104432.1| DNA gyrase, B subunit [Escherichia coli MS 119-7] gi|300903026|ref|ZP_07120968.1| DNA gyrase, B subunit [Escherichia coli MS 84-1] gi|300917471|ref|ZP_07134131.1| DNA gyrase, B subunit [Escherichia coli MS 115-1] gi|300925523|ref|ZP_07141398.1| DNA gyrase, B subunit [Escherichia coli MS 182-1] gi|300932330|ref|ZP_07147598.1| DNA gyrase, B subunit [Escherichia coli MS 187-1] gi|301020912|ref|ZP_07184967.1| DNA gyrase, B subunit [Escherichia coli MS 69-1] gi|301305955|ref|ZP_07212037.1| DNA gyrase, B subunit [Escherichia coli MS 124-1] gi|301325009|ref|ZP_07218559.1| DNA gyrase, B subunit [Escherichia coli MS 78-1] gi|301644371|ref|ZP_07244372.1| DNA gyrase, B subunit [Escherichia coli MS 146-1] gi|307140399|ref|ZP_07499755.1| DNA gyrase subunit B [Escherichia coli H736] gi|307313232|ref|ZP_07592857.1| DNA gyrase, B subunit [Escherichia coli W] gi|309795752|ref|ZP_07690167.1| DNA gyrase, B subunit [Escherichia coli MS 145-7] gi|312972009|ref|ZP_07786183.1| DNA gyrase, B subunit [Escherichia coli 1827-70] gi|331644423|ref|ZP_08345552.1| DNA gyrase, B subunit [Escherichia coli H736] gi|331655359|ref|ZP_08356358.1| DNA gyrase, B subunit [Escherichia coli M718] gi|331665349|ref|ZP_08366250.1| DNA gyrase, B subunit [Escherichia coli TA143] gi|331679797|ref|ZP_08380467.1| DNA gyrase, B subunit [Escherichia coli H591] gi|84028819|sp|P0AES7|GYRB_ECO57 RecName: Full=DNA gyrase subunit B gi|84028820|sp|P0AES6|GYRB_ECOLI RecName: Full=DNA gyrase subunit B gi|84028821|sp|P0AES8|GYRB_SHIFL RecName: Full=DNA gyrase subunit B gi|41646|emb|CAA27871.1| unnamed protein product [Escherichia coli K-12] gi|13364109|dbj|BAB38057.1| DNA gyrase subunit B GyrB [Escherichia coli O157:H7 str. Sakai] gi|30043268|gb|AAP18989.1| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 2457T] gi|48994957|gb|AAT48201.1| DNA gyrase, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|56383962|gb|AAN45208.2| DNA gyrase subunit B, type II topoisomerase [Shigella flexneri 2a str. 301] gi|73857490|gb|AAZ90197.1| DNA gyrase subunit B [Shigella sonnei Ss046] gi|85676345|dbj|BAE77595.1| DNA gyrase, subunit B [Escherichia coli str. K12 substr. W3110] gi|110617159|gb|ABF05826.1| DNA gyrase subunit B [Shigella flexneri 5 str. 8401] gi|157068859|gb|ABV08114.1| DNA gyrase, B subunit [Escherichia coli HS] gi|157077909|gb|ABV17617.1| DNA gyrase, B subunit [Escherichia coli E24377A] gi|169752993|gb|ACA75692.1| DNA gyrase, B subunit [Escherichia coli ATCC 8739] gi|187771557|gb|EDU35401.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188016891|gb|EDU55013.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4113] gi|188491442|gb|EDU66545.1| DNA gyrase, B subunit [Escherichia coli 53638] gi|189002544|gb|EDU71530.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189359308|gb|EDU77727.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189364475|gb|EDU82894.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189369611|gb|EDU88027.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189374237|gb|EDU92653.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC869] gi|189378801|gb|EDU97217.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC508] gi|190904111|gb|EDV63822.1| DNA gyrase, B subunit [Escherichia coli B7A] gi|192930583|gb|EDV83190.1| DNA gyrase, B subunit [Escherichia coli E22] gi|192957551|gb|EDV87997.1| DNA gyrase, B subunit [Escherichia coli E110019] gi|194413889|gb|EDX30167.1| DNA gyrase, B subunit [Escherichia coli B171] gi|194425377|gb|EDX41361.1| DNA gyrase, B subunit [Escherichia coli 101-1] gi|208728266|gb|EDZ77867.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208733443|gb|EDZ82130.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208742117|gb|EDZ89799.1| DNA gyrase, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209754140|gb|ACI75377.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754142|gb|ACI75378.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754144|gb|ACI75379.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209754146|gb|ACI75380.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|209914435|dbj|BAG79509.1| DNA gyrase subunit B [Escherichia coli SE11] gi|218354153|emb|CAV00752.1| DNA gyrase, subunit B [Escherichia coli 55989] gi|218363033|emb|CAR00672.1| DNA gyrase, subunit B [Escherichia coli IAI1] gi|222035413|emb|CAP78158.1| DNA gyrase subunit B [Escherichia coli LF82] gi|238860819|gb|ACR62817.1| DNA gyrase, subunit B [Escherichia coli BW2952] gi|242379238|emb|CAQ34043.1| DNA gyrase, subunit B, subunit of DNA gyrase [Escherichia coli BL21(DE3)] gi|253322483|gb|ACT27085.1| DNA gyrase, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975551|gb|ACT41222.1| DNA gyrase subunit B [Escherichia coli B str. REL606] gi|253979707|gb|ACT45377.1| DNA gyrase subunit B [Escherichia coli BL21(DE3)] gi|254595102|gb|ACT74463.1| DNA gyrase, subunit B [Escherichia coli O157:H7 str. TW14359] gi|257756539|dbj|BAI28041.1| DNA gyrase subunit B [Escherichia coli O26:H11 str. 11368] gi|257761663|dbj|BAI33160.1| DNA gyrase subunit B [Escherichia coli O103:H2 str. 12009] gi|257766786|dbj|BAI38281.1| DNA gyrase subunit B [Escherichia coli O111:H- str. 11128] gi|260447283|gb|ACX37705.1| DNA gyrase, B subunit [Escherichia coli DH1] gi|281603074|gb|ADA76058.1| DNA gyrase subunit B [Shigella flexneri 2002017] gi|290764991|gb|ADD58952.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. CB9615] gi|291321655|gb|EFE61091.1| hypothetical protein ECCG_04105 [Escherichia coli B088] gi|291431203|gb|EFF04196.1| hypothetical protein ECDG_04325 [Escherichia coli B185] gi|300398379|gb|EFJ81917.1| DNA gyrase, B subunit [Escherichia coli MS 69-1] gi|300404932|gb|EFJ88470.1| DNA gyrase, B subunit [Escherichia coli MS 84-1] gi|300415275|gb|EFJ98585.1| DNA gyrase, B subunit [Escherichia coli MS 115-1] gi|300418363|gb|EFK01674.1| DNA gyrase, B subunit [Escherichia coli MS 182-1] gi|300459916|gb|EFK23409.1| DNA gyrase, B subunit [Escherichia coli MS 187-1] gi|300523203|gb|EFK44272.1| DNA gyrase, B subunit [Escherichia coli MS 119-7] gi|300531946|gb|EFK53008.1| DNA gyrase, B subunit [Escherichia coli MS 107-1] gi|300838806|gb|EFK66566.1| DNA gyrase, B subunit [Escherichia coli MS 124-1] gi|300848103|gb|EFK75863.1| DNA gyrase, B subunit [Escherichia coli MS 78-1] gi|301077312|gb|EFK92118.1| DNA gyrase, B subunit [Escherichia coli MS 146-1] gi|306906915|gb|EFN37424.1| DNA gyrase, B subunit [Escherichia coli W] gi|308120631|gb|EFO57893.1| DNA gyrase, B subunit [Escherichia coli MS 145-7] gi|309704146|emb|CBJ03493.1| DNA gyrase subunit B [Escherichia coli ETEC H10407] gi|310334386|gb|EFQ00591.1| DNA gyrase, B subunit [Escherichia coli 1827-70] gi|312948266|gb|ADR29093.1| DNA gyrase subunit B [Escherichia coli O83:H1 str. NRG 857C] gi|313647707|gb|EFS12155.1| DNA gyrase, B subunit [Shigella flexneri 2a str. 2457T] gi|315063005|gb|ADT77332.1| DNA gyrase, subunit B [Escherichia coli W] gi|315138283|dbj|BAJ45442.1| DNA gyrase subunit B [Escherichia coli DH1] gi|315254614|gb|EFU34582.1| DNA gyrase, B subunit [Escherichia coli MS 85-1] gi|315618595|gb|EFU99181.1| DNA gyrase, B subunit [Escherichia coli 3431] gi|320191201|gb|EFW65851.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. EC1212] gi|320201273|gb|EFW75854.1| DNA gyrase subunit B [Escherichia coli EC4100B] gi|320639424|gb|EFX09039.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. G5101] gi|320655479|gb|EFX23414.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661105|gb|EFX28541.1| DNA gyrase subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320666231|gb|EFX33237.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323161049|gb|EFZ46968.1| DNA gyrase, B subunit [Escherichia coli E128010] gi|323164689|gb|EFZ50484.1| DNA gyrase, B subunit [Shigella sonnei 53G] gi|323173317|gb|EFZ58946.1| DNA gyrase, B subunit [Escherichia coli LT-68] gi|323177711|gb|EFZ63295.1| DNA gyrase, B subunit [Escherichia coli 1180] gi|323182494|gb|EFZ67898.1| DNA gyrase, B subunit [Escherichia coli 1357] gi|323189566|gb|EFZ74846.1| DNA gyrase, B subunit [Escherichia coli RN587/1] gi|323376401|gb|ADX48669.1| DNA gyrase, B subunit [Escherichia coli KO11] gi|323934950|gb|EGB31328.1| hypothetical protein ERCG_03773 [Escherichia coli E1520] gi|323939117|gb|EGB35331.1| hypothetical protein ERDG_04214 [Escherichia coli E482] gi|323944171|gb|EGB40251.1| hypothetical protein EREG_04262 [Escherichia coli H120] gi|323971176|gb|EGB66422.1| hypothetical protein ERHG_02793 [Escherichia coli TA007] gi|324018433|gb|EGB87652.1| DNA gyrase, B subunit [Escherichia coli MS 117-3] gi|324115949|gb|EGC09875.1| hypothetical protein ERBG_04036 [Escherichia coli E1167] gi|326337252|gb|EGD61087.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1044] gi|326341623|gb|EGD65412.1| DNA gyrase subunit B [Escherichia coli O157:H7 str. 1125] gi|331036717|gb|EGI08943.1| DNA gyrase, B subunit [Escherichia coli H736] gi|331047374|gb|EGI19452.1| DNA gyrase, B subunit [Escherichia coli M718] gi|331057859|gb|EGI29845.1| DNA gyrase, B subunit [Escherichia coli TA143] gi|331072969|gb|EGI44294.1| DNA gyrase, B subunit [Escherichia coli H591] gi|332345690|gb|AEE59024.1| DNA gyrase, B subunit GyrB [Escherichia coli UMNK88] gi|332750520|gb|EGJ80929.1| DNA gyrase, B subunit [Shigella flexneri K-671] gi|332750691|gb|EGJ81099.1| DNA gyrase, B subunit [Shigella flexneri 4343-70] gi|332751679|gb|EGJ82077.1| DNA gyrase, B subunit [Shigella flexneri 2747-71] gi|332764070|gb|EGJ94307.1| DNA gyrase, B subunit [Shigella flexneri 2930-71] gi|332996043|gb|EGK15670.1| DNA gyrase, B subunit [Shigella flexneri VA-6] gi|332997433|gb|EGK17049.1| DNA gyrase, B subunit [Shigella flexneri K-218] gi|332997865|gb|EGK17473.1| DNA gyrase, B subunit [Shigella flexneri K-272] gi|333013244|gb|EGK32617.1| DNA gyrase, B subunit [Shigella flexneri K-304] gi|333013660|gb|EGK33025.1| DNA gyrase, B subunit [Shigella flexneri K-227] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|218551229|ref|YP_002385021.1| DNA gyrase subunit B [Escherichia fergusonii ATCC 35469] gi|218358771|emb|CAQ91428.1| DNA gyrase, subunit B [Escherichia fergusonii ATCC 35469] gi|323965760|gb|EGB61211.1| hypothetical protein ERJG_02832 [Escherichia coli M863] gi|323975234|gb|EGB70338.1| hypothetical protein ERFG_03936 [Escherichia coli TW10509] gi|324111596|gb|EGC05577.1| hypothetical protein ERIG_03892 [Escherichia fergusonii B253] gi|325499506|gb|EGC97365.1| DNA gyrase subunit B [Escherichia fergusonii ECD227] gi|327250842|gb|EGE62544.1| DNA gyrase, B subunit [Escherichia coli STEC_7v] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|254486166|ref|ZP_05099371.1| DNA gyrase, B subunit [Roseobacter sp. GAI101] gi|214043035|gb|EEB83673.1| DNA gyrase, B subunit [Roseobacter sp. GAI101] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 454/805 (56%), Positives = 588/805 (73%), Gaps = 5/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD+ Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSDDKQIPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +VSDNGRGIP +H+ EG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVTIHEDNSVSVSDNGRGIPVGIHQGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G L V G + TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTEHLTVVGPT-DRTGTEVRFMAST 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS +++++TL+ RLREL+FLNS V+I L D+R EP +FY+GG++ FV YLDR Sbjct: 180 STFSNLEYSFETLEKRLRELAFLNSGVRIILTDERPAEPLRSELFYEGGVKEFVKYLDRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 240 KTSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INNYAQSSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L+ W EE+P EA+I+V K+++A+ R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 360 VSEKLAEWFEENPTEARIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG LYI +P Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++EDYLI Q + + + I+ DL +D A ++ + Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGIDGAVL-RQGNGEEITGQDLARVVDLARQMRR 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA I+G F +A K+A RLN IA + E+ W G I Sbjct: 599 VLEAFPTHYPRHILEQAAIAGAFVPGVVDADLQGVADKVAERLNLIALEWERGWQGRITQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + + RI RGV+E L+G + S +K F+ +++ Y L+ I G Sbjct: 659 DHGVRLARILRGVEEVRTLDGRMLRSGEAKRSGGFTQHLQDVYRMPAKLVRKDRSQMIYG 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD I + G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D ++ADDLF+ Sbjct: 719 PMDLLDAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMAEADDLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 779 KLMGDVVEPRREFIQQNALNVENLD 803 >gi|293407339|ref|ZP_06651261.1| gyrB [Escherichia coli FVEC1412] gi|298383080|ref|ZP_06992675.1| DNA gyrase subunit B [Escherichia coli FVEC1302] gi|300896028|ref|ZP_07114589.1| DNA gyrase, B subunit [Escherichia coli MS 198-1] gi|291425630|gb|EFE98666.1| gyrB [Escherichia coli FVEC1412] gi|298276916|gb|EFI18434.1| DNA gyrase subunit B [Escherichia coli FVEC1302] gi|300360088|gb|EFJ75958.1| DNA gyrase, B subunit [Escherichia coli MS 198-1] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|331675189|ref|ZP_08375942.1| DNA gyrase, B subunit [Escherichia coli TA280] gi|284923782|emb|CBG36880.1| DNA gyrase subunit B [Escherichia coli 042] gi|331067634|gb|EGI39036.1| DNA gyrase, B subunit [Escherichia coli TA280] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHANAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|300940884|ref|ZP_07155411.1| DNA gyrase, B subunit [Escherichia coli MS 21-1] gi|300454365|gb|EFK17858.1| DNA gyrase, B subunit [Escherichia coli MS 21-1] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + SD++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|83855146|ref|ZP_00948676.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1] gi|83941669|ref|ZP_00954131.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36] gi|83842989|gb|EAP82156.1| DNA gyrase subunit B [Sulfitobacter sp. NAS-14.1] gi|83847489|gb|EAP85364.1| DNA gyrase subunit B [Sulfitobacter sp. EE-36] Length = 804 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 459/805 (57%), Positives = 588/805 (73%), Gaps = 5/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSDTDQLPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVTIHDDSSVSVSDNGRGIPVGIHQEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G L V G TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTKHLEVVGPTE-RTGTEVRFMAST 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS D++++TL+ RLREL+FLNS V+I L D+R EP +FY+GG++ FV YLDR Sbjct: 180 ETFSNLDYSFETLEKRLRELAFLNSGVRIILTDERPAEPLRTELFYEGGVKEFVKYLDRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH +G R ALTR Sbjct: 240 KTSVMPEPIFISGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHTAGFRGALTRT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P AKI+V K+++A+ R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 360 VNEKLAEWFEENPQIAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG LYI +P Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIENGHLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++EDYLI Q + + + I+ DL +D A ++ + Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGIEGAMLKQG-NGEEITGQDLARVVDLARQMRR 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA I+G F + +A K+A RLN IA + E+ W G I Sbjct: 599 VLEAFPTHYPRHILEQAAIAGAFVPGAVDADLQGVADKVAERLNLIALEWERGWQGRITQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + + RI RGV+E L+G + S +K F+ +++ Y T L+ I G Sbjct: 659 DHGVRLARILRGVEEVRTLDGRMLRSGEAKRSGGFTEHLQDVYGTPAKLVRKDRSQLIHG 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I + G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++ADDLF+ Sbjct: 719 PMDLLEAILAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVADMAEADDLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803 >gi|323496930|ref|ZP_08101958.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326] gi|323318004|gb|EGA70987.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326] Length = 805 Score = 957 bits (2474), Expect = 0.0, Method: Composition-based stats. Identities = 409/812 (50%), Positives = 546/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDCSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIGET-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L D+R E + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EEDKNDHFMYEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L EHP EAK + K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVEHPAEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y ++ +L +S L + + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNASLHVNAEAPALSGEALESLVKQYNSGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + ++ + + + S E D + +L +LN E Sbjct: 594 LVDRMSRRYPRSLVHELIYSPRLTAEQCHDATAVEAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV F L S S ++ + Sbjct: 654 QHAELGLNLPKIIVRTHGVTHDFALSVDLFNSKEYGKLADLSEALDGLIEDGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|218707345|ref|YP_002414864.1| DNA gyrase subunit B [Escherichia coli UMN026] gi|218434442|emb|CAR15370.1| DNA gyrase, subunit B [Escherichia coli UMN026] Length = 804 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEN--HFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|82779228|ref|YP_405577.1| DNA gyrase subunit B [Shigella dysenteriae Sd197] gi|81243376|gb|ABB64086.1| DNA gyrase subunit B [Shigella dysenteriae Sd197] gi|281180753|dbj|BAI57083.1| DNA gyrase subunit B [Escherichia coli SE15] gi|324008035|gb|EGB77254.1| DNA gyrase, B subunit [Escherichia coli MS 57-2] Length = 804 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + SD++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|163802136|ref|ZP_02196031.1| DNA gyrase subunit B [Vibrio sp. AND4] gi|159173941|gb|EDP58751.1| DNA gyrase subunit B [Vibrio sp. AND4] Length = 805 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 403/812 (49%), Positives = 548/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V+D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVTDDGRGIPTEMHSEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+ + ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHTHTQTYHHGDPQAPLAVVGDT-DQTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L+D+R E + Y+GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLVDER-EEDKSDHFMYEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIVEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPAEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMTQYQVALALDNASLHVNAQAPALAGEALEKLVKQYNAGTK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + V + E D + +L +LN E Sbjct: 594 LADRMSRRYPSALVHEFVYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + L + S S ++ + Sbjct: 654 QHEELGLNLPKIIVRTHGVTHNYALSIDLLNSKEYAKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +T S L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVTSFASALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|215489039|ref|YP_002331470.1| DNA gyrase subunit B [Escherichia coli O127:H6 str. E2348/69] gi|215267111|emb|CAS11558.1| DNA gyrase, subunit B [Escherichia coli O127:H6 str. E2348/69] Length = 804 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHCQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNNKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|114762139|ref|ZP_01441607.1| DNA gyrase subunit B [Pelagibaca bermudensis HTCC2601] gi|114545163|gb|EAU48166.1| DNA gyrase subunit B [Roseovarius sp. HTCC2601] Length = 805 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 451/805 (56%), Positives = 584/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADFVRVKIHADNSVSVRDNGRGIPVDMHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F +G L V G A + GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFSHGETVEHLRVVGDAEGEQGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS DF + TL+ RLREL+FLNS V+I L D+R EP + Y+GG++ FV YLDR Sbjct: 181 ETFSNLDFEFATLEKRLRELAFLNSGVRIILEDERPAEPLHTELHYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+M PI + G +D I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KQPMMPEPIYMTGEKDGIGVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +T Y S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 LTRYATDSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EEHP EAK++V K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLTEWFEEHPNEAKMVVGKIVEAALAREAARKARELTRRKNPMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELF+VEGDSAGGSA+ GR R QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIDKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PL+ + RG+S YVKD+ +L+DYLI Q + + VI+ DL ID+A ++ + Sbjct: 541 PLFKVARGRSEVYVKDQAALDDYLIQQGVDGAHL-TLGNGEVITGQDLVRVIDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + + +A K+A RL+ IA + EK W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVESDLQGVADKVAERLDLIALEYEKGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++ Y T L + I G Sbjct: 660 DRGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQALQTVYATPAVLERKDRRQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D ++ADD+F+ Sbjct: 720 PLGLLEAILEEGEKGLSLQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDDMTEADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|148980121|ref|ZP_01815901.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3] gi|145961422|gb|EDK26728.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3] Length = 805 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 408/812 (50%), Positives = 543/812 (66%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CNDIIVTIHEDNSVSVRDDGRGIPTEIHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIGDT-DQTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F+YD L RLRELSFLNS V I LID+R E + ++GGI+AFV +L+ +K Sbjct: 175 TFSNVLFHYDILAKRLRELSFLNSGVSIKLIDER-EEDKSDHFMFEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P++Q R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK + K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKTVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNAALHVNPGAPALAGEALEKLVQQYNSGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L+ + + + + E D+ + +L +LN E Sbjct: 594 LVGRMSRRYPHALMHEMIYMPRLTAEQCHDESAVEAWGKQLVEQLNAKEVGASQYSLEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + L S S ++ + Sbjct: 654 KHEELGLSLPKIVVRTHGVTHEHALSVDLFNSKEYGKLASLSEALDGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQAVSNFVEALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVSNLDV 805 >gi|306815948|ref|ZP_07450086.1| DNA gyrase subunit B [Escherichia coli NC101] gi|305850344|gb|EFM50801.1| DNA gyrase subunit B [Escherichia coli NC101] Length = 804 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L+DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLLDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|242237464|ref|YP_002985645.1| DNA gyrase subunit B [Dickeya dadantii Ech703] gi|242129521|gb|ACS83823.1| DNA gyrase, B subunit [Dickeya dadantii Ech703] Length = 803 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 407/804 (50%), Positives = 543/804 (67%), Gaps = 9/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG ++ + +G PL V G A TGT V F PS + F+ Sbjct: 122 VVNALSEKLELVIRREGKLHRQEYKHGEPQAPLAVVGDAS-TTGTTVRFWPSLETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L D+R E + Y+GGI+AFV YL+R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDER-EENKADHFHYEGGIKAFVDYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E Sbjct: 240 QVFYFSAEKDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAEHSGVQKLIDRLE 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI---NNS 660 + K + V ++ L N L+ + Sbjct: 600 RRYPKALLNALVYQPALTEALLKDRAQVQQWIETLVNHLHEQEQHGSAYSFVIRDLPERH 659 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ + + + ++ + K + Sbjct: 660 EPVLRVRTHGVDSDYALDLAFVQGNEYRRINQLGEKLRGLIEDGAFIERGERKQPVASFE 719 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD+LF+ L Sbjct: 720 QALEWLTKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAMAADELFTTL 779 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 780 MGDAVEPRRAFIEENALKAANIDI 803 >gi|218702548|ref|YP_002410177.1| DNA gyrase subunit B [Escherichia coli IAI39] gi|218372534|emb|CAR20409.1| DNA gyrase, subunit B [Escherichia coli IAI39] Length = 804 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + SD++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNADQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|84501255|ref|ZP_00999460.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597] gi|84390546|gb|EAQ03034.1| DNA gyrase subunit B [Oceanicola batsensis HTCC2597] Length = 805 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 448/806 (55%), Positives = 587/806 (72%), Gaps = 4/806 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Q++ +YDADSI++LKGLDAV+KRP MYIGDTD SGLHHMIYE +DN IDE+L G Sbjct: 1 MAEPQQSAPAYDADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEAVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +V DNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADFVKVKIHADNSVSVRDNGRGIPVNMHAEEGISAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS WL+LRI R+G + + F + + PL V G A + GTEV FL S+ Sbjct: 121 LHGVGISVVNALSDWLELRIWRDGKEHYVRFEDSVTVEPLKVVGDADGEKGTEVRFLSST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS +++Y TL+ RLREL+FLNS V+I L D+R EP +FY+GG++ FV YLDR Sbjct: 181 QTFSNLNYDYATLEKRLRELAFLNSGVRIVLEDERPAEPLRTELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ +M PI ++G RD I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KQAMMSEPIHVEGERDGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +T Y +S +K++K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 LTRYATESGVAKREKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ W EE+P EAK+IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VGEKLAEWFEENPNEAKMIVGKIVEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+MLSSQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLSSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ +LEDYLI+Q + + I+ DL + +A + Sbjct: 541 PLYKVSRGKSEVYLKDQAALEDYLIDQGTEGALLRLGNGDE-IAGPDLVRVVTEARTARR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 + F ++ + +EQA I+G F +A +A RL+ IA + E+ W G Sbjct: 600 YLDSFPTHYPRHILEQAAIAGAFVAGQADADLQGVADNVAARLDQIALEYERGWQGRQTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + R+ RGV+E L+G ++ S ++ ++ ++E Y +L+ + I G Sbjct: 660 DKGIRLSRVLRGVEEVRTLDGPALRSGEARRLGSITSGLQEIYSQPATLVRRDRSLPIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G +G+ +QRYKGLGEMN QLWETTL+P+ R+LL+V++ D ++ADDLF+ Sbjct: 720 PLDLLQAILDEGERGLQLQRYKGLGEMNPEQLWETTLDPEARTLLQVRVEDMAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD VEPRREFIQ N+L LDI Sbjct: 780 KLMGDVVEPRREFIQANALNVENLDI 805 >gi|262392780|ref|YP_003284634.1| DNA gyrase subunit B [Vibrio sp. Ex25] gi|262336374|gb|ACY50169.1| DNA gyrase subunit B [Vibrio sp. Ex25] Length = 805 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 404/812 (49%), Positives = 549/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L+D+R + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDEE++ Y ++ +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + + E D + + +L +LN E Sbjct: 594 LAERMSRRYPSALVNELIYTPRLTPEQCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + + + S S ++ + Sbjct: 654 QHEELGLNLPKIVVRTHGVTHEHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + + LD + +G+S QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TMPVASFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|163745039|ref|ZP_02152399.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45] gi|161381857|gb|EDQ06266.1| DNA gyrase subunit B [Oceanibulbus indolifex HEL-45] Length = 804 Score = 956 bits (2472), Expect = 0.0, Method: Composition-based stats. Identities = 461/805 (57%), Positives = 591/805 (73%), Gaps = 5/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSDTAQTPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TVT++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVTVTIHEDSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G L V G + TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHIARFEGGFTTKHLEVLGDT-DRTGTEVRFMAST 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++ ++TL+ RLREL+FLNS V+I L D+R EP ++Y GG++ FV YLDRH Sbjct: 180 DTFSNREYIFETLEKRLRELAFLNSGVRIILTDERPVEPLRTELYYDGGVKEFVKYLDRH 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G RD+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 240 KTSVMPEPIFITGERDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INGYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P EAK IV K+++A+ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 360 VNEKLAEWFEENPAEAKQIVGKIVEAAQAREAARKARELTRRKSAMDVNFLAGKLKDCSE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI +G LYI +P Sbjct: 480 ALGTGIGRDEFNLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEHGHLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++EDYLI Q + + + IS DL +D A ++ + Sbjct: 540 PLYKVSRGKSEVYLKDQAAMEDYLIQQGVDGAML-RQGNGEEISGQDLTRVVDMARQLRR 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA I+G F +A K+A+RLN IA + E+ W G I Sbjct: 599 VLEAFPTHYPRHIVEQAAIAGAFVDGVVDSDLQGVADKVADRLNLIALEYERGWQGRITQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y +L+ I G Sbjct: 659 DHGIRLARILRGVEEVRTLDGRMMRSGEARKSGTFTKHLQEVYDQPATLVRKDRSQLIHG 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD IF+ G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+V++ D ++ADDLF+ Sbjct: 719 PMDLLDAIFAEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVRVEDMAEADDLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803 >gi|209754138|gb|ACI75376.1| DNA repair and genetic recombination protein RecF [Escherichia coli] gi|320644867|gb|EFX13903.1| DNA gyrase subunit B [Escherichia coli O157:H- str. 493-89] gi|320650131|gb|EFX18627.1| DNA gyrase subunit B [Escherichia coli O157:H- str. H 2687] Length = 804 Score = 956 bits (2471), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEVLEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|290547|gb|AAA62050.1| DNA gyrase, subunit B [Escherichia coli] Length = 804 Score = 955 bits (2470), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+A RRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAPRRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHXSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRXFIEENALKAANIDI 804 >gi|300956295|ref|ZP_07168597.1| DNA gyrase, B subunit [Escherichia coli MS 175-1] gi|300316882|gb|EFJ66666.1| DNA gyrase, B subunit [Escherichia coli MS 175-1] Length = 804 Score = 955 bits (2470), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLS QE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSYQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|311277336|ref|YP_003939567.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1] gi|308746531|gb|ADO46283.1| DNA gyrase, B subunit [Enterobacter cloacae SCF1] Length = 804 Score = 955 bits (2470), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQLYTHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHCNANAPALAGEPLERLVSEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + + ++ ++L + LN + K + + Sbjct: 599 RRYPRALLNALIYQPTLTESDLGSEQTATRWVNQLVSELNENEQHGSQWKFDIRENAEQQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV ++ + + + ++ + + + Sbjct: 659 QFEPVIRVRTHGVDTDYLFDHEFVTGGEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|91228345|ref|ZP_01262273.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01] gi|269965275|ref|ZP_06179396.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B] gi|91188105|gb|EAS74409.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01] gi|269830076|gb|EEZ84304.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B] Length = 805 Score = 955 bits (2470), Expect = 0.0, Method: Composition-based stats. Identities = 404/812 (49%), Positives = 549/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L+D+R + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDEE++ Y ++ +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + + E D + + +L +LN E Sbjct: 594 LAERMSRRYPSALVNELIYTPRLTPEQCHDASVVEAWTKQLIEQLNAKEVGASQYSYEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + + + S S ++ + Sbjct: 654 QHEELGLNLPKIVVRTHGVTHEHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + + LD + +G+S QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TMPVANFAEALDWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|149204288|ref|ZP_01881255.1| DNA gyrase subunit B [Roseovarius sp. TM1035] gi|149142173|gb|EDM30220.1| DNA gyrase subunit B [Roseovarius sp. TM1035] Length = 805 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 449/805 (55%), Positives = 572/805 (71%), Gaps = 4/805 (0%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEPAAAPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +VSDNGRGIP D+H+ EG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVTIHADSSVSVSDNGRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G A GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSEWLELRIWRNGKEHYARFEGGFTVESLRVVGDANGRKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS ++ ++TL+ RLREL+FLNS V+I L D+R EP +FY+GG++ FV YLDRH Sbjct: 181 ETFSNLEYIFETLEKRLRELAFLNSGVRIILTDERPTEPLRSELFYEGGVKEFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P M PI I G RD+I I++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR Sbjct: 241 KSPAMPDPIFITGERDDIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 INTYAQTSGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ W EE+P A++IV K+++A+ R+AAR+AR+LTRRK +D+ L GKL DCS Sbjct: 361 VGEKLAEWFEENPQVARVIVGKIIEAAHAREAARKARELTRRKNPMDVNFLAGKLKDCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELFLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRGTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDIKKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ LEDYLI Q ++ S I+ DL +++A + + Sbjct: 541 PLYKVMRGKSEVYLKDQGGLEDYLIAQGTTDAAL-RLGSGEEIAGPDLVRVVEEARQARR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 +++ F ++ + +EQA I+ F +A +A RL+ I+ + E+ W G Sbjct: 600 ILEAFPTHYPRHILEQAAIAEAFLPGRVDSDLQGVADTVAARLDMISNEYERGWQGRPTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + + R RGV+E L+G + ++ + + + Y +LI I G Sbjct: 660 DKGLRLSRTVRGVEEMRTLDGPVLRGGEARKLAQLTAPLRDIYRERATLIRKDRAQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD I G KG+S+QRYKGLGEMN +QLWETTL+P+ R+LL+VKI D ++ADDLF+ Sbjct: 720 PLDLLDAILKEGEKGLSLQRYKGLGEMNPNQLWETTLDPEARTLLQVKIDDVAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQDNALNVANLD 804 >gi|190889652|ref|YP_001976194.1| DNA gyrase, B subunit [Rhizobium etli CIAT 652] gi|190694931|gb|ACE89016.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652] gi|327191183|gb|EGE58226.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512] Length = 811 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 519/806 (64%), Positives = 652/806 (80%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 DI+TV+LN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DIVTVSLNPDGSVTVTDNGRGIPTDIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PL VTG A + TGTEV+F+PSS+ Sbjct: 127 GVGVSVVNALSVWLKLKIRRHGKIHEMSFTHGVADAPLKVTGDAPDATGTEVSFMPSSET 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + ++ M Y GG+EAFV+YLDR KK Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLSDKRHSDIKQEEMRYDGGLEAFVAYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL+ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 PLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +KK+K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYADNSGITKKEKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + LS W EEHP EAKI+V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + RGKS+QY+KDE++LE+YLI Q L + S V + DLR I DAL++ L+ Sbjct: 547 YKVARGKSVQYLKDEKALEEYLIGQGLEDAAL-RLGSGEVRTGQDLREVILDALRMRALL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + +++ +EQA I+G N E + +LAS++A+RL+ IAE++E+ W G + + Sbjct: 606 DNLHSRYNRAVVEQAAIAGALNAELVSDAARARALASEVASRLDIIAEETERGWQGDLTS 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + ++R+ RGV+E VL+ + I S +++ ++R++E Y T SL I+I+G Sbjct: 666 DGGLRLERMVRGVKEIVVLDMALIGSSDARHIDQLTSRLKEIYQTPPSLHRREGDIEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+ Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVADATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811 >gi|15804293|ref|NP_290332.1| DNA gyrase subunit B [Escherichia coli O157:H7 EDL933] gi|25292809|pir||D86054 hypothetical protein gyrB [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12518538|gb|AAG58896.1|AE005601_2 DNA gyrase subunit B, type II topoisomerase, ATPase activity [Escherichia coli O157:H7 str. EDL933] Length = 804 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K+ DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIXDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEG SAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGXSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|194431109|ref|ZP_03063402.1| DNA gyrase, B subunit [Shigella dysenteriae 1012] gi|194420564|gb|EDX36640.1| DNA gyrase, B subunit [Shigella dysenteriae 1012] gi|320180040|gb|EFW54982.1| DNA gyrase subunit B [Shigella boydii ATCC 9905] gi|332084055|gb|EGI89262.1| DNA gyrase, B subunit [Shigella dysenteriae 155-74] gi|332084889|gb|EGI90072.1| DNA gyrase, B subunit [Shigella boydii 5216-82] Length = 804 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLGHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|260774984|ref|ZP_05883884.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450] gi|260609074|gb|EEX35233.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450] Length = 805 Score = 955 bits (2468), Expect = 0.0, Method: Composition-based stats. Identities = 406/812 (50%), Positives = 545/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDCSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIGET-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L+D+R E + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDER-EEDKSDHFMYEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKVFHFNAEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESV 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L EHP EAK + K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVEHPTEAKAVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDNASLHVNAEAPALAGEALEKLVQQYNSGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L++ + + + + + E D + +L +LN E Sbjct: 594 LVERMSRRYPHALMHELIYTPRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + + GV + L I S S + + Sbjct: 654 QHAELGLNLPKIVVRTHGVTHEHALSIDLINSKEYGKLADLSEALNGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQPVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPEQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|255261451|ref|ZP_05340793.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62] gi|255103786|gb|EET46460.1| DNA gyrase, B subunit [Thalassiobium sp. R2A62] Length = 805 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 588/805 (73%), Gaps = 4/805 (0%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSDN Q N Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSDNEQSNEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVAVTIHADHSVSVSDNGRGIPVGMHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LR+ R+ + F +G L V G A GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSVWLELRVWRDDKEHYAKFSHGETVEHLRVEGEAKGRKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++ L+ RLREL+FLNS V+I L D+R E E T+FY GG++ FV YLDR Sbjct: 181 DTFSNLEYSFEILERRLRELAFLNSGVKIILRDERPAEALETTLFYDGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +++ PI I G +D+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTAMIEDPIFIVGEKDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 301 INNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EE+P EA++IV K+++A++ R+AAR+AR+LTRRK LD+ L GKL DCSE Sbjct: 361 MNEKLSEWFEENPNEARLIVSKIIEAAVAREAARKARELTRRKTALDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFKIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RG+S Y+KD+ +L+DYLI+Q + + ++ DL +++A ++ + Sbjct: 541 PLYKVARGRSEVYLKDQAALDDYLIDQGIDGAVLKLASGAR-MTGADLLRVVNEARQLRR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + IEQA I+G F + +A +A RLN IA + E+ W G I Sbjct: 600 VLEAFPTHYPRHIIEQAAIAGAFEQGAVDRDLQGVADHVAERLNLIALEYERGWAGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + R+ RGV+E L+G + S ++ F+ ++E Y +L I G Sbjct: 660 DHGIRLARLLRGVEEVRTLDGPMLRSGEARRTGTFTESLQEVYGQPATLHRKDRSQMIMG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++ADDLF+ Sbjct: 720 PLDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVEDMAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|308047726|ref|YP_003911292.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799] gi|307629916|gb|ADN74218.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799] Length = 805 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 401/808 (49%), Positives = 547/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ DGS +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHADGSVSVQDDGRGIPVDMHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L ++R+G+I+E + G PL G + TGT + F PSS IFS Sbjct: 121 VSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVGDT-DKTGTTIRFWPSSQIFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V I L+D+R + Y+GGI AFV +L+++K P+ Sbjct: 180 TTFHYDILAKRLRELSFLNSGVSIRLVDERDAKE--DHYCYEGGIHAFVEFLNQNKTPVH 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y Sbjct: 238 QQVFHFTIEREDGIGVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP Sbjct: 358 LQDFLLENPGDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK +Y+KDE +L +YL + +L IS L ++ ++ +++ Sbjct: 538 VKKGKQERYIKDEAALTEYLTSLALDNASLHVNQDAPGISGEHLERLVNQYREVQDVVER 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEK-----SEKSWHGS 656 K+ + + V + S ++ +L + LN + + E Sbjct: 598 QSRRFPKSLLNKLVYVPGLSEGSLKDKAEITEWTERLVSELNELDLEGATYRYELQEESE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + GV+ ++L I S N I + + + + Sbjct: 658 RGLWLPKLVLRQHGVESNYLLTFDFINSSDYGRIVALGNAIGDLMEEGAYVRRGERTLPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L + + ++G+ +QRYKGLGEMN QLWETT++P+TR +LRV I DA AD L Sbjct: 718 DSFEKGLTWLMNESKRGLYIQRYKGLGEMNPDQLWETTMDPETRRMLRVTIEDAIGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENS-LPSALDI 803 F+ LMGD+VEPRR+FI++N+ L + LD+ Sbjct: 778 FTTLMGDQVEPRRDFIEKNALLVANLDV 805 >gi|323959764|gb|EGB55414.1| hypothetical protein ERGG_03715 [Escherichia coli H489] Length = 804 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FERALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|117619604|ref|YP_854532.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561011|gb|ABK37959.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 803 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 413/810 (50%), Positives = 535/810 (66%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V DNGRGIP D+H EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CSDIQVKIHSDGSVSVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R G++YE ++ G PL G + TGTEV F PS Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPT 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS F+Y+ L RLRELSFLNS V I L+D+R + RE Y+GGI+AFV YL+++K Sbjct: 176 IFSDTLFHYEILAKRLRELSFLNSGVSIRLLDER--DGREAHFCYEGGIKAFVEYLNQNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + Sbjct: 234 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY++K SKK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 294 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E+P +AKI+V K++DA+ R+AAR+AR+LTRRKG LDIA LPGKLADC E+ Sbjct: 354 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I G++YI +PP Sbjct: 474 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KDE++L Y +L +S I L ++ + L Sbjct: 534 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRSVSHL 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654 I + + Q + N S + ++ + LN I + + Sbjct: 594 ITRMSRRAPEAVLTQLIYQPELNEALLSSESDLLAWCQSMEAVLNESNHGIQYQMQVRHD 653 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 GV ++ L + S + I + Sbjct: 654 EERRLFVPHAVVRQHGVDREYPLSYDFLQSSEYRQLVSLGKEIANLIEEGGYIKRGEKVK 713 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + ++ + G++GI +QRYKGLGEMN QLWETT++P+ R +LRV I DA AD Sbjct: 714 PVASFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 773 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFS LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 QLFSTLMGDAVEPRRDFIETNALRVANLDV 803 >gi|300947540|ref|ZP_07161717.1| DNA gyrase, B subunit [Escherichia coli MS 116-1] gi|300452877|gb|EFK16497.1| DNA gyrase, B subunit [Escherichia coli MS 116-1] Length = 804 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAE IMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEGIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|82546037|ref|YP_409984.1| DNA gyrase subunit B [Shigella boydii Sb227] gi|187731654|ref|YP_001882467.1| DNA gyrase subunit B [Shigella boydii CDC 3083-94] gi|81247448|gb|ABB68156.1| DNA gyrase subunit B [Shigella boydii Sb227] gi|187428646|gb|ACD07920.1| DNA gyrase, B subunit [Shigella boydii CDC 3083-94] gi|320174827|gb|EFW49950.1| DNA gyrase subunit B [Shigella dysenteriae CDC 74-1112] gi|332089417|gb|EGI94521.1| DNA gyrase, B subunit [Shigella boydii 3594-74] Length = 804 Score = 954 bits (2467), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|161505634|ref|YP_001572746.1| DNA gyrase subunit B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866981|gb|ABX23604.1| hypothetical protein SARI_03810 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 804 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL +TG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQLYEHGVPQAPLAITGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGEALEKLVSEYNAAQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V +++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLTEADLSNEQTVTRWVNALITELNEKEQHGSQWKFDVYTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICQLGEKLRGLIEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|283836132|ref|ZP_06355873.1| hypothetical protein CIT292_10552 [Citrobacter youngae ATCC 29220] gi|291068320|gb|EFE06429.1| DNA gyrase, B subunit [Citrobacter youngae ATCC 29220] Length = 804 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 553/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG +++ ++++G+ PL VTG TGT+V F PS + F+ Sbjct: 122 VVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-VTGTQVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V +++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLPEADLANEQNVTRWVNALITELNEKEQHGSLWKFDVHHNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV +VL+ + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYVLDHEFVTGGEYHRICTLGEKLRGLIEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|28896788|ref|NP_796393.1| DNA gyrase subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|153839074|ref|ZP_01991741.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810] gi|260363487|ref|ZP_05776320.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030] gi|260876546|ref|ZP_05888901.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034] gi|260897307|ref|ZP_05905803.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466] gi|260901413|ref|ZP_05909808.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037] gi|29611941|sp|O51859|GYRB_VIBPA RecName: Full=DNA gyrase subunit B gi|28804996|dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633] gi|149747457|gb|EDM58411.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810] gi|308087831|gb|EFO37526.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466] gi|308090372|gb|EFO40067.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034] gi|308107191|gb|EFO44731.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037] gi|308113561|gb|EFO51101.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030] gi|328471241|gb|EGF42143.1| DNA gyrase subunit B [Vibrio parahaemolyticus 10329] Length = 805 Score = 954 bits (2466), Expect = 0.0, Method: Composition-based stats. Identities = 406/812 (50%), Positives = 550/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G+I+ ++ +G + PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDT-DKTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ-DHFMYEGGIQAFVQHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDEE++ Y ++ +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEEAMNQYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 L + + + + + + E D + +L +LN E Sbjct: 594 LADRMSRRYPRALVHELIYTSRLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSYEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + L + S S ++ + Sbjct: 654 LHAELGLSLPKIIVRTHGVTHEHALSVDFLNSKEYGKLADLSEVLDGLLEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ L+ + +G+S QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TLPVSSFAEALEWLVKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRHFIEENALKVANLDV 805 >gi|145297128|ref|YP_001139969.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida A449] gi|142849900|gb|ABO88221.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida A449] Length = 804 Score = 954 bits (2465), Expect = 0.0, Method: Composition-based stats. Identities = 410/810 (50%), Positives = 536/810 (66%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V DNGRGIP D+H+EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R G++YE ++ G PL G + + TGTEV F PS Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDSSSGTGTEVRFWPSPT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ ++Y+ L RLRELSFLNS V I L D+R + RE+ Y+GGI+AFV YL+++K Sbjct: 177 IFTDTLYHYEILAKRLRELSFLNSGVSIRLQDER--DGREVHFCYEGGIKAFVEYLNQNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + Sbjct: 235 TPIHPKVFHFSTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y++K SKK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NTYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +L E+P +AKI+V K++DA+ R+AAR+AR+LTRRKG LDIA LPGKLADC E+ Sbjct: 355 GEKLGEFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I G++YI +PP Sbjct: 475 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KDE++L Y +L +S I L ++ + L Sbjct: 535 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPPIGGEALERLVNQHRAVSHL 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654 I + Q + N + + ++ + LN I + + Sbjct: 595 ITRMSRRAPDAVLTQLIYQPELNETLLASESDLLAWCQGMEAVLNESNHGIQYQIQVRRD 654 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + GV ++ + + S + I + Sbjct: 655 EERSLFVPHAVVRQHGVDREYAISYDFLQSSEYRQLVSLGKEIANLIEDGGFIKRGEKVK 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 I +D + G++GI +QRYKGLGEMN QLWETT++P+ R +LRV I DA AD Sbjct: 715 PIANFVEAVDWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFS LMGD VEPRR+FI+ N+L LD+ Sbjct: 775 QLFSTLMGDAVEPRRDFIETNALRVANLDV 804 >gi|320185536|gb|EFW60302.1| DNA gyrase subunit B [Shigella flexneri CDC 796-83] Length = 804 Score = 954 bits (2465), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVYEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|59710619|ref|YP_203395.1| DNA gyrase subunit B [Vibrio fischeri ES114] gi|59478720|gb|AAW84507.1| DNA gyrase, subunit B [Vibrio fischeri ES114] Length = 805 Score = 954 bits (2465), Expect = 0.0, Method: Composition-based stats. Identities = 411/812 (50%), Positives = 551/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDNSVSVSDDGRGIPTAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G I++ + +G + PL V G + TGT++ F PS + Sbjct: 116 HGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F Y+ L RLRELSFLNS V I L D R E + Y+GGI+AFV +L+R+K Sbjct: 175 TFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 354 MGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 414 KDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ +Y I +L I+ L + + + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMAEYQIALALDNASLFTNADAPAIAGQALEDLVVQYNSVMK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS----- 652 LI + + + + V +G E D+ + LN + + Sbjct: 594 LIDRMSRRYPVSVLNRLVYTGRLTQEMCADEASAQAWTEAFVAELNATEVGASQYNAALL 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + N + GV+ ++VL + S + ++ Sbjct: 654 FDEEANAYQPKLVVRTHGVEHEYVLSIDLLNSKEYARIADLAEALDGLLEESAYAQRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K ++ L + R+G S+QRYKGLGEMN QLWETT++P++R +++V I DA Sbjct: 714 KQPVSSFEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+LF+ LMGD+VEPRR FI+EN+L LDI Sbjct: 774 ADELFTTLMGDQVEPRRNFIEENALRVSNLDI 805 >gi|237729021|ref|ZP_04559502.1| DNA gyrase subunit B [Citrobacter sp. 30_2] gi|226909643|gb|EEH95561.1| DNA gyrase subunit B [Citrobacter sp. 30_2] Length = 804 Score = 953 bits (2464), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 552/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG +++ ++++G+ PL VTG TGT+V F PS + F+ Sbjct: 122 VVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETE-LTGTQVRFWPSHETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D+ + S+L N LN S +N Sbjct: 599 RRFPKALLKELVYQPTLPEADLADEAKVTAWVSQLVNVLNENEMHGSTWNSFVRKDAELN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + LE + ++ + + + Sbjct: 659 LFEPVIRVRTHGVDTDYPLEHEFVTGGEYHRICTLGEKLRGLIEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLQKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|330447266|ref|ZP_08310916.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491457|dbj|GAA05413.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 805 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGS +VSD+GRGIPT+LH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDGSVSVSDDGRGIPTELHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS ++L IKR G+I++ + +G+ D PL V G ++TGT + F PS + F+ + Sbjct: 122 VVNALSEKVELTIKRGGHIHQQVYRHGVPDAPLAVIGDT-DETGTRIRFWPSEETFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L RLRELSFLNS V I L D+R E + Y+GGI+AFV +L+R+K P+ Sbjct: 181 FQYEILAKRLRELSFLNSGVSIKLNDER-EEGKHDHFMYEGGIQAFVEHLNRNKTPIHPK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 RD+ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R ALTR + S+++ Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK + K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLLENPADAKTVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E + Y +L D I+ L + KLI Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAITGAALETLVTQYNAGIKLIDRMS 599 Query: 606 PNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V E + + + L LN SE N Sbjct: 600 RRYPSLMLNEFVYQPRLTTEMMADEAKVEAWLAPLITALNAKQSGESLYSSEIIRDEENN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V GV +++L + S S ++ + K ++ Sbjct: 660 VFLPKVIVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALDGLLEDTAFVQRGERKQAVSS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +++V I DA AD+LF+ Sbjct: 720 FKDALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+EN+L LD+ Sbjct: 780 CLMGDQVEPRRNFIEENALKVANLDV 805 >gi|197250721|ref|YP_002148773.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214424|gb|ACH51821.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 804 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVNS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|16762490|ref|NP_458107.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16767120|ref|NP_462735.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143978|ref|NP_807320.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161616952|ref|YP_001590917.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548876|ref|ZP_02342635.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992428|ref|ZP_02573526.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233389|ref|ZP_02658447.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235474|ref|ZP_02660532.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242054|ref|ZP_02666986.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260381|ref|ZP_02682354.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464835|ref|ZP_02698727.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818305|ref|ZP_02830305.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442844|ref|YP_002043085.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449732|ref|YP_002047868.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472695|ref|ZP_03078679.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737072|ref|YP_002116779.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262274|ref|ZP_03162348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244047|ref|YP_002217785.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387101|ref|ZP_03213713.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928757|ref|ZP_03219956.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354578|ref|YP_002228379.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859061|ref|YP_002245712.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213424954|ref|ZP_03357704.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|224585634|ref|YP_002639433.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913088|ref|ZP_04656925.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826402|ref|ZP_06545514.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61225454|sp|P0A2I3|GYRB_SALTY RecName: Full=DNA gyrase subunit B gi|61225456|sp|P0A2I4|GYRB_SALTI RecName: Full=DNA gyrase subunit B gi|25292820|pir||AD0958 DNA gyrase chain B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16422408|gb|AAL22694.1| DNA gyrase, subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504795|emb|CAD03160.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi] gi|29139614|gb|AAO71180.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|149693011|emb|CAK55540.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693013|emb|CAK55541.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|161366316|gb|ABX70084.1| hypothetical protein SPAB_04773 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401507|gb|ACF61729.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408036|gb|ACF68255.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459059|gb|EDX47898.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712574|gb|ACF91795.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632426|gb|EDX50910.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240529|gb|EDY23149.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291517|gb|EDY30869.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938563|gb|ACH75896.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604199|gb|EDZ02744.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322190|gb|EDZ07388.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274359|emb|CAR39384.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325567|gb|EDZ13406.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329403|gb|EDZ16167.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332584|gb|EDZ19348.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338996|gb|EDZ25760.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344661|gb|EDZ31425.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350152|gb|EDZ36783.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710864|emb|CAR35228.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470162|gb|ACN47992.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248976|emb|CBG26833.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996120|gb|ACY91005.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160368|emb|CBW19893.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914965|dbj|BAJ38939.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088256|emb|CBY98018.1| DNA gyrase, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225553|gb|EFX50608.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617252|gb|EFY14157.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619060|gb|EFY15946.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625127|gb|EFY21955.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630178|gb|EFY26949.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634396|gb|EFY31130.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635281|gb|EFY31996.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642908|gb|EFY39491.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647625|gb|EFY44112.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650569|gb|EFY46976.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656405|gb|EFY52697.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661585|gb|EFY57808.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661666|gb|EFY57885.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668220|gb|EFY64378.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672851|gb|EFY68959.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674968|gb|EFY71054.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683658|gb|EFY79671.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687734|gb|EFY83703.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323132196|gb|ADX19626.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192051|gb|EFZ77286.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200533|gb|EFZ85611.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204959|gb|EFZ89944.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206702|gb|EFZ91659.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211774|gb|EFZ96607.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218636|gb|EGA03343.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220037|gb|EGA04507.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224807|gb|EGA09072.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232484|gb|EGA16586.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235259|gb|EGA19344.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241047|gb|EGA25084.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241403|gb|EGA25435.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248634|gb|EGA32564.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252067|gb|EGA35927.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258629|gb|EGA42292.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262340|gb|EGA45898.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268176|gb|EGA51652.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270590|gb|EGA54035.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625571|gb|EGE31916.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629714|gb|EGE36057.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990685|gb|AEF09668.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 804 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + +T Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|209551517|ref|YP_002283434.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537273|gb|ACI57208.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 811 Score = 952 bits (2462), Expect = 0.0, Method: Composition-based stats. Identities = 517/806 (64%), Positives = 656/806 (81%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 DI+TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R+G I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+D Sbjct: 127 GVGVSVVNALSVWLKLKIRRQGKIHEMSFTHGVADAPLKVTGEAPNETGTEVSFMPSTDT 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + ++ + Y GG+EAFV+YLDR KK Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L+ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 SLVDKPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ W EEHP EAKI+V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++RGKS+QY+KDE++LE+YLI+Q L + S V + DLR I DAL++ L+ Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDAALKLG-SGEVRTGQDLREVILDALRMRALL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + +++ IEQA I+G N E D+ +L S++A+RL+ IAE++E+ W G + + Sbjct: 606 DNLHSRYNRAAIEQAAIAGALNAERVSDRARAQALTSEVASRLDIIAEETERGWQGDLTS 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + ++R+ RGV+E VL+ + I S +++ ++R++E Y T SL ++I+G Sbjct: 666 DGGLRLERMVRGVKEIVVLDMALIGSSDARHIDQLTSRLKEIYQTPPSLHRREGDLEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD LF+ Sbjct: 726 PRALLDAIFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVPDATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811 >gi|254472258|ref|ZP_05085658.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062] gi|211958541|gb|EEA93741.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062] Length = 817 Score = 952 bits (2462), Expect = 0.0, Method: Composition-based stats. Identities = 474/799 (59%), Positives = 601/799 (75%), Gaps = 5/799 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L G+AD +TVTL Sbjct: 20 EYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALAGHADYVTVTL 79 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV+DNGRGIP D+H EEGISAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 80 NADGSVTVTDNGRGIPVDIHPEEGISAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVV 139 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ L LRI R + + F +G PL V G A +GTEVTF PS + F+ +F+ Sbjct: 140 NALSTTLDLRIYRNDKEHFIRFHHGESAGPLEVVGDAPGKSGTEVTFTPSPETFTKTEFD 199 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 YDTL+HRLREL+FLNS +I L D R EP ++Y+GG+EAFV YLDR K PL++ P+ Sbjct: 200 YDTLEHRLRELAFLNSGARIILTDNRGVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPV 259 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + +D I++++AM WN YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + S Sbjct: 260 TMMAEKDGITVEVAMWWNSSYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADTSG 319 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K++K S G+DCREG + VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ V + LS WL Sbjct: 320 LLKREKVSPTGEDCREGLSCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVGEALSTWL 379 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE+P AK IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERD K+ELF Sbjct: 380 EENPAPAKSIVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDASKAELF 439 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAKQGR R NQA+LPL+GKILNVERARFDKM+SSQEIGTLITALGTGIG + Sbjct: 440 IVEGDSAGGSAKQGRDRSNQAVLPLKGKILNVERARFDKMISSQEIGTLITALGTGIGNE 499 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F++ KLRYHKIIIMTDADVDGAHIRTLLLTF FRQMP LI NG++YI +PPLY +TRGK Sbjct: 500 EFNLEKLRYHKIIIMTDADVDGAHIRTLLLTFLFRQMPDLIENGYVYIAQPPLYKVTRGK 559 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 S QY+KDE + E+YLI L E + V DLR+ +++A ++ ++ + + Sbjct: 560 SEQYLKDEAAFEEYLIGSGLDETSLALA-NGEVRLGEDLRSVVEEAREVSDILNGLHSRY 618 Query: 609 DKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGS-INNSDILVK 665 DK +EQA I+G N + + E A+ +A RL+ +A++ E+ W G D++ Sbjct: 619 DKAVVEQAAIAGALNSDNLHNHEKAQEAAAYIARRLDILADEFERGWEGEATEEGDLIFS 678 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 R+ RGV+E ++ + + S ++ ++E Y SL+ ++I GP +LL+ Sbjct: 679 RVVRGVKEVTTIDAALLGSADARRLDSHFKHLDEVYHKAASLVRKDKSVEIRGPQALLEA 738 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 +++ GRKGISMQRYKGLGEMN QLWETTL+P+ RSLL+VKI +A ADD+F++LMGDEV Sbjct: 739 VYAQGRKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKIKEADAADDIFTKLMGDEV 798 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FIQ N+L LD+ Sbjct: 799 EPRRDFIQTNALSVANLDV 817 >gi|163733266|ref|ZP_02140710.1| DNA gyrase subunit B [Roseobacter litoralis Och 149] gi|161393801|gb|EDQ18126.1| DNA gyrase subunit B [Roseobacter litoralis Och 149] Length = 804 Score = 952 bits (2462), Expect = 0.0, Method: Composition-based stats. Identities = 455/805 (56%), Positives = 590/805 (73%), Gaps = 5/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N Q Y A+SI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSENEQAPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVTVKIHADSSISVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G + L V G + TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTVDHLKVVGDT-DRTGTEVRFMAST 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS +++++TL+ RLREL+FLNS V+I LID+R E +FY+GG++ FV YLDR Sbjct: 180 DTFSNLEYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSELFYEGGVKEFVKYLDRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 240 KSSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S ++K+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P EAKI+V K+++A+ R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 360 VNEKLAEWFEENPSEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G LYI +P Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIEQGHLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KDE ++E+YL+ Q + + +++ IS DL ++ A ++ + Sbjct: 540 PLYKVSRGKSEVYLKDEAAMEEYLVQQGIDGAMLRQGNNEE-ISGADLARVVELARQMRR 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + +A K+A RLN IA + E+ W G I Sbjct: 599 VLDAFPTHYPRHILEQAAIAGAFTPGAVDADLQGVADKVAARLNLIALEYERGWQGRITQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + + F+ ++E Y +L+ I G Sbjct: 659 DHGIRLARILRGVEEVRTLDGRILRGGEASRSGSFTEHLQEVYNLPATLVRKDRTQLIHG 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++ADDLF+ Sbjct: 719 PMDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDDMAEADDLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803 >gi|238917987|ref|YP_002931501.1| DNA gyrase subunit B [Edwardsiella ictaluri 93-146] gi|238867555|gb|ACR67266.1| DNA gyrase, B subunit, putative [Edwardsiella ictaluri 93-146] Length = 804 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 408/805 (50%), Positives = 548/805 (68%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G+++E + +G+ PL V G + TGT V F PS + FS Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDT-DLTGTRVRFWPSMETFSNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLCDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y ++ +L + ++ L + + + KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEYYQAQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658 + K + Q + + +Q + L LN + Sbjct: 599 RRYPKAVLNQLIYQPTLSDADLGNQAQVEQWINSLVATLNEKELHGSVYSARALENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + LV+ GV + + + + ++ + + + + Sbjct: 659 MFEPLVRVRTHGVDTDYGFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+ R +LRV I DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 LMGD VEPRR FI+EN+L + LD Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803 >gi|157144341|ref|YP_001451660.1| DNA gyrase subunit B [Citrobacter koseri ATCC BAA-895] gi|157081546|gb|ABV11224.1| hypothetical protein CKO_00045 [Citrobacter koseri ATCC BAA-895] Length = 804 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 404/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKIHRQIYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + D K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSDYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V +++ + L LN + K + + Sbjct: 599 RRFPKALLKELVYQPTLTEADLSNEQAVTRWVNALITELNEKEQHGSQWKFDVRENAEQQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + + Sbjct: 659 QFEPIVRVRTHGVDTDYPLDHEFVTGGEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|254439392|ref|ZP_05052886.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307] gi|198254838|gb|EDY79152.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307] Length = 805 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 451/805 (56%), Positives = 582/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+D Q Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MTDEQQKPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ DGS +VSDNGRGIP +H+ EG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVNVKIHDDGSVSVSDNGRGIPVGIHEGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS +L+LRI R G + F G L V G+ TGTEV FL S Sbjct: 121 LHGVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLEVVADCGDRTGTEVRFLASL 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS ++F ++TL+ RLREL+FLNS V+I L D+R E ++Y GG++ FV YLDR Sbjct: 181 DTFSNREFYFETLEKRLRELAFLNSGVRIILTDERPAEHLVSELYYDGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ PI + G RD I +++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR Sbjct: 241 KTSILPEPIYVIGERDEIVVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +K++K S GDD REG T VLSIK+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 INNYAQSSGIAKREKISFTGDDAREGLTCVLSIKVPDPKFSSQTKDKLVSSEVRPAVENI 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EE+P AKI+V K+++A+ R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 361 MNEKLSEWFEENPQIAKIVVSKIVEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KD+ ++ DYL Q + + + I DLR +D+A ++ + Sbjct: 541 PLYKVSRGKSEVYLKDQAAMNDYLTEQGVEGAML-RQGNGEEIGGADLRRVVDEAGRLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHILEQAAIAGAFVAGAVDADLQGVADKVAKRLDLIAHEWERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +S I + RI RGV+E L+G + S ++ F+ +++ Y T +LI I G Sbjct: 660 DSGIRLARILRGVEEVRTLDGPMMRSGEARKSGTFTQHLQDVYNTPATLIRKDRVQNIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL + G +G+S+QRYKGLGEMN SQLWETTL+PD R+LL+VK+ D ++ADDLF+ Sbjct: 720 PLDLLKAVLEEGERGLSLQRYKGLGEMNPSQLWETTLDPDARTLLQVKVEDVAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804 >gi|110677620|ref|YP_680627.1| DNA gyrase subunit B [Roseobacter denitrificans OCh 114] gi|109453736|gb|ABG29941.1| DNA gyrase, B subunit [Roseobacter denitrificans OCh 114] Length = 804 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 456/805 (56%), Positives = 589/805 (73%), Gaps = 5/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N Q Y A+SI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSENDQTPEEYGANSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADAVTVKIHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI REG + F G L V G + TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWREGKEHVARFEGGFTTRHLEVVGDT-DRTGTEVRFMAST 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS D++++TL+ RLREL+FLNS V+I LID+R E +FY+GG++ FV YLDR Sbjct: 180 ETFSNLDYSFETLEKRLRELAFLNSGVRIILIDERPAEELRSDLFYEGGVKEFVKYLDRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +M PI I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 240 KSSVMPEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S ++K+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INNYAQSSGIARKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P EAKI+V K+++A+ R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 360 VNEKLAEWFEENPAEAKIVVGKIIEAAHAREAARKARDLTRRKTAMDVNFLAGKLKDCSE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R+ QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 420 KDPSKTEVFLVEGDSAGGSAQTGRDRQTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G LYI +P Sbjct: 480 ALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQLIEQGHLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS Y+KDE ++E+YLI Q + + +++ IS DL ++ A ++ + Sbjct: 540 PLYKVSRGKSEVYLKDEAAMEEYLIQQGIDGAMLRQGNNEE-ISGADLARVVELARQMRR 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + +A K+A RLN IA + E+ W G I Sbjct: 599 VLDAFPTHYPRHILEQAAIAGAFTPGAVDADLQGVADKVAARLNLIALEYERGWQGRITQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + + F+ ++E Y +L+ I G Sbjct: 659 DHGIRLARILRGVEEVRTLDGRILRGGEASRSGSFTEHLQEVYNLPATLVRKDRTQLIHG 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++ADDLF+ Sbjct: 719 PMDLLNAILQEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVDDMAEADDLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 779 KLMGDVVEPRREFIQQNALSVENLD 803 >gi|56415708|ref|YP_152783.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364636|ref|YP_002144273.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129965|gb|AAV79471.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096113|emb|CAR61709.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 804 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I I++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGIEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + +T Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|261341641|ref|ZP_05969499.1| hypothetical protein ENTCAN_08109 [Enterobacter cancerogenus ATCC 35316] gi|288315998|gb|EFC54936.1| DNA gyrase, B subunit [Enterobacter cancerogenus ATCC 35316] Length = 803 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 549/806 (68%), Gaps = 13/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQVYTHGVPQAPLAVTGDT-DKTGTLVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIRAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNAAQKMIVRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658 + KT ++ V D++ + L + LN E+ W + Sbjct: 599 RRYPKTLLKALVYQPTLTEADLSDEQTVSRWVNSLVSELNE-NEQHGSMWKCDVQQNADQ 657 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + LE + + ++ + + + Sbjct: 658 QFEPVIRVRTHGVDTDYPLEHEFVTGPEYRRLCTLGEKLRGLIEDDAFIERGERRQPVAS 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 718 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 777 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803 >gi|149912808|ref|ZP_01901342.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b] gi|149813214|gb|EDM73040.1| DNA gyrase, B subunit [Roseobacter sp. AzwK-3b] Length = 805 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 449/805 (55%), Positives = 578/805 (71%), Gaps = 4/805 (0%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEAVPSPDEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +VSDNGRGIP ++H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADAVNVTIHADSSISVSDNGRGIPVEIHEEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LR+ R G + F G L V G A GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSEWLELRVWRNGKEHYARFEGGDTVEHLRVVGDANGRKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS ++++DTL+ RLREL+FLNS V+I L D+R EP + Y GG++ FV YLDRH Sbjct: 181 ETFSNLEYSFDTLEKRLRELAFLNSGVRIILRDERPAEPLVTELHYDGGVQEFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ PI I G +D + +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KTSMIAEPISINGEKDGVGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y ++S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 301 IQKYAQESGIAKREKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ W EE+P EAK IV K+++A+M R+AAR+ARDLTRRK +D+ L GKL DCSE Sbjct: 361 VYEKLTEWFEENPNEAKQIVGKIIEAAMAREAARKARDLTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELFLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTELFLVEGDSAGGSAQTGRDRSTQAVLPLRGKILNVERARFDRMLGSQEIGNLVV 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI NG+LYI +P Sbjct: 481 ALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIENGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KDE +LEDYLI Q + + S I DL +++A + + Sbjct: 541 PLYKVMRGKSEVYLKDEPALEDYLIQQGTDDAML-RLGSGEEIVGQDLVRIVEEARQTKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA I+ F +A +A RL+ IA + E+ W G + Sbjct: 600 ILEAFPTHYPRHILEQASITEAFMPGRADADLQGVADAIAKRLDLIALEYERGWQGRVTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ I + R RGV+E L G + ++ + + E Y L+ + I G Sbjct: 660 DNGIRLTRSLRGVEEIRTLNGPILRGGEARRLGQLTASLREIYEFPAKLVRKDREQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+VKI D ++ADDLF+ Sbjct: 720 PLDLLDAILKEGEKGLTLQRYKGLGEMNPGQLWETTLDPDARTLLQVKIDDVAEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALNVENLD 804 >gi|269137362|ref|YP_003294062.1| DNA gyrase subunit B [Edwardsiella tarda EIB202] gi|267983022|gb|ACY82851.1| DNA gyrase subunit B [Edwardsiella tarda EIB202] gi|304557463|gb|ADM40127.1| DNA gyrase subunit B [Edwardsiella tarda FL6-60] Length = 804 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 408/805 (50%), Positives = 549/805 (68%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G+++E + +G+ PL V G TGT V F PS + FS Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDTE-QTGTRVRFWPSMETFSNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y ++ +L + ++ L + + ++ KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEHYQVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658 + K + Q + + +Q + L LN + + Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLGNQAQVEQWINSLVATLNEKEQHGSVYSARVLENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + LV+ GV + + + + ++ + + + + Sbjct: 659 MFEPLVRVRTHGVDTDYAFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+ R +LRV I DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 LMGD VEPRR FI+EN+L + LD Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803 >gi|271498582|ref|YP_003331607.1| DNA gyrase subunit B [Dickeya dadantii Ech586] gi|270342137|gb|ACZ74902.1| DNA gyrase, B subunit [Dickeya dadantii Ech586] Length = 803 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 405/805 (50%), Positives = 545/805 (67%), Gaps = 11/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG ++ + +G PL V G A + TGT V F PS + F+ Sbjct: 122 VVNALSEKLELVIRREGKLHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL+R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDEREA-NKADHFHYEGGIKAFVEYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIALALDGATLHTNAHAPALAGEPLEKLVAGHYGVQKLIDRME 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NN 659 + + + + + S + + +++EK + S Sbjct: 600 RRYPRALLNALIYQPSLTEAMLNSQAEA-QSWMEALIQYLSEKEQHGSTYSFILRHVNER 658 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +++ GV + L+ + ++ + K + Sbjct: 659 HEPVLRIRTHGVDTDYALDLMFAQGNEYRKINQLGEKLRGLIEDGAFVERGERKQPVASF 718 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD+LF+ Sbjct: 719 EQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTT 778 Query: 780 LMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 LMGDAVEPRRAFIEENALKAANIDI 803 >gi|62182323|ref|YP_218740.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129956|gb|AAX67659.1| DNA gyrase, subunit B (type II topoisomerase) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716814|gb|EFZ08385.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 804 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVMDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D++ + L LN + K + + N Sbjct: 599 RRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + +T Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|114319170|ref|YP_740853.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1] gi|114225564|gb|ABI55363.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1] Length = 805 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 408/811 (50%), Positives = 545/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ SYD+DSI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN++DE+L GY Sbjct: 1 MTEQT---SYDSDSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+DNGRGIP D+H EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEIQVTIHGDNSVTVADNGRGIPVDIHTEEGCSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R G ++ + G+ PL V G +TGT +TFLPS + Sbjct: 118 HGVGVSVVNALSERLRLVIQRNGKVHTQEYRMGVPVEPLKVVGET-QETGTRLTFLPSRE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 +F+ +NYD L R RELSFLN V+I+L D+R+ + Y GGI+AFV +L+R+K Sbjct: 177 VFTQTQYNYDILAKRFRELSFLNPGVRIALKDERTEKE--DVFEYAGGIKAFVEHLNRNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + + G R+++ +D+AM+WND Y EN+ CFTNNIPQ+DGGTHLSG R+ALTR + Sbjct: 235 DPLHPTVFYLAGMRESVGVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLSGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E +KK K + GDD REG T+V+S+K PDP+FSSQTK+KLVSSE++ +VE + Sbjct: 295 NQYLEAQGYAKKLKVTPTGDDIREGLTAVVSVKAPDPKFSSQTKDKLVSSEIKGIVEGVL 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P EAK I +K++DAS R+AAR+AR++TRRKGVLD+A LPGKLADC E+ Sbjct: 355 AEAFNDFLYENPAEAKAIAEKIIDASRAREAARKAREMTRRKGVLDVAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKML+S E+GTLITA Sbjct: 415 DPAQSEIYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLASVEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM L+ G +YI +PP Sbjct: 475 LGCGIGKDEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK YVKDE L +YL+ +L++ + IS L L+ L Sbjct: 535 LYKVKRGKQEHYVKDEAELTEYLLQIALADASLHSQEGAPPISGEALGRLARRYLEAMDL 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKS-----EKSW 653 + D T + + + + + L R N +KS + Sbjct: 595 VDHMRRRWDPTLLSEMTALAPVSEQDFADGAAMTRWFETLVERANAQQDKSVTYTLDLQL 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + V + G+ + + S + + + ++ + + + Sbjct: 655 GTEGGFKEARVIKRMHGILYPYTFNSAFFLSAEYETLKRLAEQLHGLFGDGGFIQRGERR 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++D + R+G S+QRYKGLGEMN QLWETT+NPDTR LLRV I DA + Sbjct: 715 KPVATLQEVVDWLMDEARRGQSIQRYKGLGEMNPDQLWETTMNPDTRRLLRVTIEDAVAS 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD+VEPRR+FI++N+L LDI Sbjct: 775 DEIFTTLMGDQVEPRRDFIEQNALTVANLDI 805 >gi|238897209|ref|YP_002921957.1| DNA gyrase subunit B [Klebsiella pneumoniae NTUH-K2044] gi|238549539|dbj|BAH65890.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 805 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 406/808 (50%), Positives = 552/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I Sbjct: 1 MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+R+ +++ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 121 VSVVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTN 179 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 180 VTEFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y Sbjct: 238 HPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E+++ Y I+ +L + ++ L + + K+I Sbjct: 538 VKKGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 K +++ + D++ + L + LN + K + + Sbjct: 598 MERRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + + + +++ GV + L+ I + ++ + + + Sbjct: 658 LQHFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD L Sbjct: 718 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805 >gi|293393724|ref|ZP_06638032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera DSM 4582] gi|291423768|gb|EFE96989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Serratia odorifera DSM 4582] Length = 804 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 401/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ +G PL V G TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYSHGEPQTPLKVVGETE-QTGTTVRFWPSYQTFTNQT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLKDKRDDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 TVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L Sbjct: 299 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAMS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y I +L ++ L + + + KLI Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANAHAPALAGEPLEKLVAEHYSVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + + DQ + L N LN + + Sbjct: 599 RRYPRALLNNLIYQPTLAEDDLGDQAKVQAWIESLVNLLNEKEQHGSSYGYVMIENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ I + ++ + + + Sbjct: 659 MFEPTLRIRTHGVDTDYPLDFDFIHGGEYRKICQLGEKLRGLIEDDAFIERGERRQPVDS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDSVEPRRAFIEENALKAANIDI 804 >gi|146276064|ref|YP_001166223.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025] gi|145554305|gb|ABP68918.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17025] Length = 811 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 452/812 (55%), Positives = 584/812 (71%), Gaps = 12/812 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A +TV ++ D S +V DNGRGIP D+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF---- 175 LHGVGVSVVNALS WL+LRI R G + F NG L V A + GTEV F Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGKEHYARFENGETVEHLRVVRDAPGEKGTEVRFLAAA 180 Query: 176 ---LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 P FS D+++ TL++RLREL+FLNS V+I L D+R EP +FY+GG+ F Sbjct: 181 KTNRPDGT-FSNLDYSFKTLENRLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREF 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YLDR K P+M PI I G R I +++AM WND YHE VL FTNNIPQ+DGGTHL+G Sbjct: 240 VRYLDRSKSPVMPEPIFITGERGGIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHLAGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR IT Y + S ++++K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 300 RGALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VE+ VN+ L+ W EE+P AK IV K+++A++ R+AAR+AR++TRRK +D+ASLPG Sbjct: 360 RPAVENLVNEKLAEWFEENPAAAKGIVGKIVEAALAREAARKAREMTRRKTAMDVASLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+ Sbjct: 420 KLADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I G Sbjct: 480 TVGTLITALGAGIGRDEFDIGKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 FLYI +PPLY + RGKS Y+KD+ +L+DYLI Q + I + I+ DL I+ Sbjct: 540 FLYIAQPPLYKVARGKSEVYLKDQAALDDYLIQQGIEGAILRLATGEE-IAGQDLLRVIE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 A + ++++ F ++ + +EQA +SG F+ + +A ++A RL+ A + E+ Sbjct: 599 GARQFRRVLEGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERG 658 Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 W G I + I + R+ RGV+E L+G+ + S ++ S + + Y L+ Sbjct: 659 WKGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKD 718 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + I GP +LL + + G KG+S+QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D + Sbjct: 719 REQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVEDLA 778 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +ADD+F++LMGD VEPRREFIQ+N+L LD Sbjct: 779 EADDIFTKLMGDVVEPRREFIQQNALNVENLD 810 >gi|197334084|ref|YP_002154784.1| DNA gyrase, B subunit [Vibrio fischeri MJ11] gi|197315574|gb|ACH65021.1| DNA gyrase, B subunit [Vibrio fischeri MJ11] Length = 805 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 411/812 (50%), Positives = 552/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIIVTIHEDNSVSVSDDGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G I++ + +G + PL V G + TGT++ F PS + Sbjct: 116 HGVGVSVVNALSEKVELTIHRAGEIHQQVYHHGEPEAPLAVIGKT-DTTGTKIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F Y+ L RLRELSFLNS V I L D R E + Y+GGI+AFV +L+R+K Sbjct: 175 TFTNVVFVYEILAKRLRELSFLNSGVSIKLQDMR-EEDKADHFMYEGGIQAFVQHLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q R++ IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 354 MGEKLSEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 414 KDPGLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ +Y I +L I+ L + + + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMAEYQIALALDNASLFTNADAPAIAGQALEDLVVQYNSVMK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS----- 652 LI + + + + V +G E D+ + LN + + Sbjct: 594 LIDRMSRRYPVSVLNRLVYTGRLTQEMCADEASAQAWTEAFVAELNANEVGASQYNAALL 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + N + GV+ ++VL + S + ++ Sbjct: 654 FDEEANAYQPKLVVRTHGVEHEYVLSIDLLNSKEYARIADLAEALDGLLEEGAYAQRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K ++ L + R+G S+QRYKGLGEMN QLWETT++P++R +++V I DA Sbjct: 714 KQPVSSFEDALAWLTKESRRGFSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+LF+ LMGD+VEPRR FI+EN+L LDI Sbjct: 774 ADELFTTLMGDQVEPRRNFIEENALRVSNLDI 805 >gi|288932896|ref|YP_003436955.1| DNA gyrase subunit beta [Klebsiella variicola At-22] gi|288887625|gb|ADC55943.1| DNA gyrase, B subunit [Klebsiella variicola At-22] Length = 804 Score = 950 bits (2457), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ +++ +++G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ + D++ + L + LN + K + +G + Sbjct: 599 RRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENGELQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + ++ + + + Sbjct: 659 QFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|149191879|ref|ZP_01870113.1| DNA gyrase subunit B [Vibrio shilonii AK1] gi|148834271|gb|EDL51274.1| DNA gyrase subunit B [Vibrio shilonii AK1] Length = 805 Score = 950 bits (2457), Expect = 0.0, Method: Composition-based stats. Identities = 409/812 (50%), Positives = 552/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CNDIIVTIHEDNSVSVSDDGRGIPTEMHPEEQVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G + PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLTVIGDT-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I LIDKR E + ++GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFMFEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P++Q RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAKTATSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAKI+ K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLVENPGEAKIVCTKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y ++ +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAALHVNSEAPALAGEALEKLVQQYNAAVK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKS 652 + + + + + E D + + +L +LN E Sbjct: 594 TVDRMSRRYPHAMVGEFMYVPRLTAEQCHDAAAVEAWSKQLVEQLNNKEVGASQYSFEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + + V GV + V+ + S + S ++ + Sbjct: 654 QHAELGVNLPKVVVRTHGVTHEHVISVDLLNSKEYRQLADTSEALDGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++T L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQEVTNFVDALEWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADQLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|152972606|ref|YP_001337752.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330005216|ref|ZP_08305175.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3] gi|150957455|gb|ABR79485.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328536348|gb|EGF62710.1| DNA gyrase, B subunit [Klebsiella sp. MS 92-3] Length = 804 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ +++ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ + D++ + L + LN + K + + + Sbjct: 599 RRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + +++ GV + L+ I + ++ + + + Sbjct: 659 HFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886] gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886] Length = 805 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 398/806 (49%), Positives = 551/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGS +V D+GRGIP D+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDGSVSVKDDGRGIPVDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L+L I R G++++ + G+ + PL V G ++TGT + F PS + FS Sbjct: 122 VVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIGDT-DETGTRIRFWPSDETFSDTT 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I LID+R E + Y+GGI AFV +L+R+K P+ + Sbjct: 181 FHYDILAKRLRELSFLNSGVSIKLIDER-EENKHDHFMYEGGIRAFVEHLNRNKTPIHPT 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + R++ +S++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++ Sbjct: 240 VFHFEHEREDGVSVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNNFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P ++KI+ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLIENPQDSKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E++E Y ++ +L ++ L + + KLIK Sbjct: 540 KGKQEQYIKDDEAMEQYQVSIALENASLYVNQDAPALNGLALEELVKQYNGVMKLIKRMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V + + + + L LN + ++E + Sbjct: 600 RRYPHAMLNELVYQPRLSVDTLKSESDVRAWIDTLVAVLNKNSTGESQYRAEVKFDEEHQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + GV ++++ + S S + + K + Sbjct: 660 AYQPELIVRTHGVDHEYLISYDLLNSKEYGRIADLSEALNGLLDDTAYIQRGERKQPVKS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + +G++ QRYKGLGEMN QLWETT++P++R ++RV I DA AD+LF+ Sbjct: 720 FADALAWLIKESNRGLTRQRYKGLGEMNPDQLWETTMDPESRRMMRVTIQDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI++N+L LD+ Sbjct: 780 TLMGDHVEPRRAFIEDNALKVANLDV 805 >gi|251787656|ref|YP_003002377.1| DNA gyrase subunit B [Dickeya zeae Ech1591] gi|247536277|gb|ACT04898.1| DNA gyrase, B subunit [Dickeya zeae Ech1591] Length = 803 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 412/810 (50%), Positives = 546/810 (67%), Gaps = 21/810 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G PL V G A + TGT V F PS + F+ Sbjct: 122 VVNALSEKLELVIRREGKIHRQEYKHGEPQAPLGVIGDA-DATGTTVRFWPSLETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL+R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDEREA-NKADHFHYEGGIKAFVEYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAGHYGVQKLIDRME 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI------ 657 + + + + Q S L LN EK HGS Sbjct: 600 RRYPRALLNALIYQPSLTETMLNSQAEAQSWMEALIQYLN------EKEQHGSTYSFILR 653 Query: 658 ---NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + +++ GV + L+ + + + ++ + K Sbjct: 654 QVNERHEPVLRVRTHGVDSDYALDLAFVQGNEYRKINGLGEKLRGLIEDGAFVERGERKQ 713 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD Sbjct: 714 PVVSFEQALDWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAAD 773 Query: 775 DLFSRLMGDEVEPRREFIQENSLP-SALDI 803 +LF+ LMGD VEPRR FI+EN+L + +DI Sbjct: 774 ELFTTLMGDAVEPRRAFIEENALKAANIDI 803 >gi|221640845|ref|YP_002527107.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131] gi|221161626|gb|ACM02606.1| DNA gyrase subunit B [Rhodobacter sphaeroides KD131] Length = 811 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 453/811 (55%), Positives = 585/811 (72%), Gaps = 10/811 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A +TV ++ D S +V DNGRGIP D+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F NG L V A + GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASA 180 Query: 180 DI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FS D+++ TL+ RLREL+FLNS V+I L D+R EP +FY+GG+ FV Sbjct: 181 KTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFV 240 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLDR K P+M PI I G R I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR 300 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR IT Y + S ++++K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR Sbjct: 301 GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VE+ VN+ L+ W EE+P AK IV K+++A++ R+AAR+AR++TRRK +D+ASLPGK Sbjct: 361 PAVENLVNEKLAEWFEENPATAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASLPGK 420 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+ Sbjct: 421 LADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSET 480 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I GF Sbjct: 481 VGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGF 540 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI +PPLY + RGKS Y+KD+ +L+DYLI+Q + I + I+ DL I+ Sbjct: 541 LYIAQPPLYKVARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEE-IAGQDLLRVIEG 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 A + +++ F ++ + +EQA +SG F+ + +A ++A RL+ A + E+ W Sbjct: 600 ARQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERGW 659 Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G I + I + R+ RGV+E L+G+ + S ++ S + + Y L+ Sbjct: 660 KGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKDR 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I GP +LL + + G KG+S+QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D ++ Sbjct: 720 EQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAE 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 ADD+F++LMGD VEPRREFIQ+N+L LD Sbjct: 780 ADDIFTKLMGDVVEPRREFIQQNALNVENLD 810 >gi|260429429|ref|ZP_05783406.1| DNA gyrase, B subunit [Citreicella sp. SE45] gi|260420052|gb|EEX13305.1| DNA gyrase, B subunit [Citreicella sp. SE45] Length = 805 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 455/805 (56%), Positives = 584/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEPAGAPQEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADFVRVKIHADNSVSVRDNGRGIPVDMHHEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F +G L V G A + GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETTEHLRVVGEAPGEKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS DF++ TL+ RLREL+FLNS V+I L D+R EP I + Y GG++ FV YLDR Sbjct: 181 GTFSNLDFDFHTLEKRLRELAFLNSGVRIILEDERPAEPLRIELHYDGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+M PI + G +D I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R ALTR Sbjct: 241 KQPMMPDPIYMTGEKDGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +T Y S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 LTRYATDSGIAKREKVNFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EEHP EAKIIV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLTEWFEEHPNEAKIIVGKIVEAALAREAARKARELTRRKNPMDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+ELF+VEGDSAGGSA+ GR R QAILPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTELFIVEGDSAGGSAQTGRDRGTQAILPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKII+MTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS YVKD+ +L+ YLI+Q + S VI DLR ID+A ++ + Sbjct: 541 PLYKVSRGKSEVYVKDQAALDAYLIDQGIDGAHL-TLGSGEVIVGQDLRRIIDEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A ++A RL+ IA + EK W G I Sbjct: 600 VLDAFPTHYPRHILEQAAVAGAFVPGAVDADLQGVADRVAQRLDLIAVEYEKGWTGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++ Y T +L + I G Sbjct: 660 DRGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTQALQAIYSTASTLERKDRRQAIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D ++ADD+F+ Sbjct: 720 PLGLLEGILEEGEKGLALQRYKGLGEMNPGQLWETTLDPDARTLLQVRVDDLTEADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|296100375|ref|YP_003610521.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054834|gb|ADF59572.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 803 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 550/806 (68%), Gaps = 13/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ + PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYQHGVPEAPLAVTGDTE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L+E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 DYLQENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y I +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658 + K +++ + +++ + L + LN E+ W + Sbjct: 599 RRYPKALLKELIYQPTLTEADLSNEQAVTRWVNALVSELNEK-EQHGSQWKFDVQQNAAQ 657 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + LE + + ++ + + + Sbjct: 658 QFEPIIRVRTHGVDTDYPLEHEFVTGPEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 777 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803 >gi|146309671|ref|YP_001174745.1| DNA gyrase subunit B [Enterobacter sp. 638] gi|145316547|gb|ABP58694.1| DNA gyrase subunit B [Enterobacter sp. 638] Length = 804 Score = 950 bits (2456), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 545/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHGDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I REG + + +G+ PL VTG TGT V F PS + FS Sbjct: 122 VVNALSQKLELVIYREGKAHHQVYSHGVPQAPLAVTGDTE-KTGTTVRFWPSHETFSNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGAHLVGFRTAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP +S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPARS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGASLHANAFAPALAGEPLEKLVSEYNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 +T ++ V D++ ++L LN + K + + ++ Sbjct: 599 RRFPRTLLKALVYQPTLTEADLSDEQTVTRWINQLITDLNENEQHGSMWKFDVRENAELH 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + + Sbjct: 659 QFEPIVRVRTHGVDTDYPLDHEFVTGGEYRRLCTLGEKLRGLIEDDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+ +QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLYIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|77464924|ref|YP_354428.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1] gi|126460793|ref|YP_001041907.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|332559823|ref|ZP_08414145.1| DNA gyrase subunit B [Rhodobacter sphaeroides WS8N] gi|77389342|gb|ABA80527.1| DNA gyrase subunit B [Rhodobacter sphaeroides 2.4.1] gi|126102457|gb|ABN75135.1| DNA gyrase subunit B [Rhodobacter sphaeroides ATCC 17029] gi|332277535|gb|EGJ22850.1| DNA gyrase subunit B [Rhodobacter sphaeroides WS8N] Length = 811 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 453/811 (55%), Positives = 585/811 (72%), Gaps = 10/811 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A +TV ++ D S +V DNGRGIP D+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F NG L V A + GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRNGREHFARFENGETVEHLRVVRDAPGEKGTEVRFLASA 180 Query: 180 DI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FS D+++ TL+ RLREL+FLNS V+I L D+R EP +FY+GG+ FV Sbjct: 181 KTNRPDGTFSNLDYSFKTLEARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFV 240 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLDR K P+M PI I G R I +++AM WND YHE VL FTNNIPQ+DGGTHL+G R Sbjct: 241 RYLDRSKSPVMPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR 300 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR IT Y + S ++++K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR Sbjct: 301 GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VE+ VN+ L+ W EE+P AK IV K+++A++ R+AAR+AR++TRRK +D+ASLPGK Sbjct: 361 PAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAARKAREMTRRKTAMDVASLPGK 420 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS+ Sbjct: 421 LADCQEKDPALSELFIVEGDSAGGSAKQGRARKNQAVLPLRGKILNVERARFDRMLSSET 480 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +GTLITALG GIG+D FDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP++I GF Sbjct: 481 VGTLITALGAGIGRDEFDIAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGF 540 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI +PPLY + RGKS Y+KD+ +L+DYLI+Q + I + I+ DL I+ Sbjct: 541 LYIAQPPLYKVARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEE-IAGQDLLRVIEG 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 A + +++ F ++ + +EQA +SG F+ + +A ++A RL+ A + E+ W Sbjct: 600 ARQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDLTAAEYERGW 659 Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G I + I + R+ RGV+E L+G+ + S ++ S + + Y L+ Sbjct: 660 KGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQVSGQTRDVYAPGARLVRKDR 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I GP +LL + + G KG+S+QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D ++ Sbjct: 720 EQPIHGPIALLKAVLAEGEKGLSLQRYKGLGEMNPEQLWETTLDPEARTLLQVKVDDLAE 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 ADD+F++LMGD VEPRREFIQ+N+L LD Sbjct: 780 ADDIFTKLMGDVVEPRREFIQQNALNVENLD 810 >gi|262040463|ref|ZP_06013706.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042216|gb|EEW43244.1| DNA gyrase subunit B [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 804 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ +++ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKVHKQMYEHGVPQAPLAVTGET-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILVKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ + D++ + L + LN + K + + + Sbjct: 599 RRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + +++ GV + L+ I + ++ + + + Sbjct: 659 HFEPVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|332288569|ref|YP_004419421.1| DNA gyrase subunit B [Gallibacterium anatis UMN179] gi|330431465|gb|AEC16524.1| DNA gyrase subunit B [Gallibacterium anatis UMN179] Length = 806 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 552/810 (68%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSNQT-SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CKDIIVTIHEDNSVSVQDDGRGIPVGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+REG+++E + G PL V G + + TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRREGHVHEQFYRLGEPQAPLAVIGES-DKTGTTVRFWPSPS 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F Y+ L RLRELSFLNS V I LID R+ R Y+GGI+AFV YL+++K Sbjct: 179 IFSDTEFQYEVLSKRLRELSFLNSGVSIRLIDLRT--NRSDHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + Sbjct: 237 NPIHSKPFYLNTEKDGIGVEVALQWNDGFQENLYCFTNNIPQRDGGTHLAGFRAAMTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EK +KK K ++ GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+SVVES V Sbjct: 297 NNYMEKEGYNKKSKVAMAGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVKSVVESAV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +L E+P +AKIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 GERLQEYLLENPNDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFD+MLSSQE+ LITA Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDRMLSSQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++ Y + +L + + L N + + +++K+ Sbjct: 537 LYKVKKGKQEQYIKDDDAMTQYELAIALDGAALYVNPTAPAMQGLPLENLVAEYNRVNKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLA-----NRLNFIAEKSEKSW 653 I + + + + +E S L L+ ++ + Sbjct: 597 INRVSRRYPAAILRELIYQDDLTPALMQQEEAVKSWVDALVATLARKELHGTHYSAKVQY 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + + ++ G+ L+ I +++ + + Sbjct: 657 NAERHLYEPVITVRTHGIDTDHALDFHFIEGSEYALLLKLGHQLRNLLEEGAYVTRGERR 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ +D + R+G+S+QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 717 LNVSSFEQAIDWLVKESRRGLSVQRYKGLGEMNPEQLWETTMDPEARRMLKVSIRDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D +F+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DQIFTTLMGDEVEPRRDFIETNALHANLDI 806 >gi|202078776|gb|ACH96434.1| DNA gyrase subunit B [Edwardsiella tarda] Length = 804 Score = 950 bits (2455), Expect = 0.0, Method: Composition-based stats. Identities = 407/805 (50%), Positives = 548/805 (68%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G+++E + +G+ PL V G TGT V F PS + FS Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYRHGVPAAPLKVVGDTE-QTGTRVRFWPSMETFSNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 299 NEGYTKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +A I+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAYIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y ++ +L + ++ L + + ++ KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQMSIALDGAALHINAAAPALAGEPLEKLVAEHYQVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658 + K + Q + + +Q + L LN + + Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLGNQAQVEQWINSLVATLNEKEQHGSVYSARVLENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + LV+ GV + + + + ++ + + + + Sbjct: 659 MFEPLVRVRTHGVDTDYAFDFDFVHGAEYRRICALGEKLRDLLEESAFVERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+ R +LRV I DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 LMGD VEPRR FI+EN+L + LD Sbjct: 779 TLMGDAVEPRRAFIEENALKASNLD 803 >gi|89069843|ref|ZP_01157178.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516] gi|89044644|gb|EAR50760.1| DNA gyrase subunit B [Oceanicola granulosus HTCC2516] Length = 805 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 442/805 (54%), Positives = 587/805 (72%), Gaps = 4/805 (0%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MAEPERIPEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +VSDNGRGIP D+H+ EG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVHVKIHADSSVSVSDNGRGIPVDIHQGEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LR+ R G + F +G L V G A +GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSVWLELRVWRNGKEHVARFEHGETVEHLKVVGDAHGRSGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS D+++ TL+ RLREL+FLNS V+I L D R EP + +FY+GG++ FV YLDR Sbjct: 181 DTFSNLDYDFHTLEKRLRELAFLNSGVRIILEDDRPAEPLHVELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ PI ++G RD+I++++AM WND Y+E VL FTNNIPQ+DGGTH++G R+ALTR Sbjct: 241 KSAMLPEPIHVEGMRDDITVEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRAALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +T Y +S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 301 VTKYATESGIAKREKVNFTGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L+ W EE+P +AK+IV K+++A+ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VSEKLAEWFEENPGQAKMIVSKIVEAAQAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP ++E+FLVEGDSAGGSA+ GR R QA+LPL+GKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPTQTEVFLVEGDSAGGSAQTGRDRRTQAVLPLKGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI NG +YI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQLIENGHIYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RG+S Y+KD+ ++++YLI Q + + I DL+ +++A ++ + Sbjct: 541 PLYKVSRGRSEVYLKDQAAMDEYLIEQGVDGAALRLGTGEE-IVGQDLKRVVEEARQLRR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 +++ F ++ + +EQA I+G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLEAFPTHYPRHILEQAAIAGAFVSGEVERDLQGVADKVAARLDLIALEYERGWQGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y T +L I G Sbjct: 660 DKGIRLARILRGVEEVRTLDGPMLRSGEARRSGSFTQSLQEVYGTAATLYRKDRSQVIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G +G+++QRYKGLGEMN QLWETTL+PD R+ L+VKI D ++ADDLF+ Sbjct: 720 PLGLLQAILEEGERGLTLQRYKGLGEMNPEQLWETTLDPDARTFLQVKIDDVTEADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|206576571|ref|YP_002235889.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342] gi|206565629|gb|ACI07405.1| DNA gyrase, B subunit [Klebsiella pneumoniae 342] Length = 804 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ +++ +++G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANAPALAGEPLEKLVAEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ + D++ + L + LN + K + + + Sbjct: 599 RRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENSELQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + ++ + + + Sbjct: 659 QFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|241206955|ref|YP_002978051.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860845|gb|ACS58512.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 811 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 517/806 (64%), Positives = 652/806 (80%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 DI+TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+ Sbjct: 127 GVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFMPSTGT 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + ++ + Y GG+EAFV+YLDR KK Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L+ P+ I G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 SLVDKPVAIHGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + LS W EEHP EAKI+V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALSTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++RGKS+QY+KDE++LE+YLI+Q L + S V + DLR I DAL++ L+ Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDASL-RLGSGEVRAGQDLREVILDALRMRALL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + ++++ +EQA I+G N E SD ++LA+++A RL+ IAE++E+ W G + Sbjct: 606 DNLHSRYNRSAVEQAAIAGALNAELASDPARALALANEVAGRLDIIAEETERGWRGDVTT 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + ++R+ RGV+E VL+ + I S +++ + R++E Y T SL I+I+G Sbjct: 666 DGGLRLERMVRGVRELVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+ Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQEN+L LDI Sbjct: 786 RLMGDEVEPRREFIQENALSVANLDI 811 >gi|116249778|ref|YP_765616.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841] gi|115254426|emb|CAK05500.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 811 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 516/806 (64%), Positives = 653/806 (81%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TENGVSTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 DI+TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DIVTVTLNPDGSVTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R I+EMSF +G+ D PL VTG A N+TGTEV+F+PS+D Sbjct: 127 GVGVSVVNALSVWLKLKIRRHDKIHEMSFTHGVADAPLKVTGDAPNETGTEVSFMPSTDT 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + ++ + Y GG+EAFV+YLDR KK Sbjct: 187 FTMTEFDYGTLEHRLRELAFLNSGVRILLTDKRHSDIKQEELRYDGGLEAFVAYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L+ P+ I G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 SLVDKPVAIHGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQVV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +K++K ++ G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYADSSGITKREKVTLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ W EEHP EAKI+V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALNTWFEEHPSEAKILVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PTKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++RGKS+QY+KDE++LE+YLI+Q L + S V + DLR I DAL++ L+ Sbjct: 547 YKVSRGKSVQYLKDEKALEEYLISQGLEDASL-RLGSGEVRAGQDLREVILDALRMRALL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + ++++ +EQA I+G N E SD ++LA+++A RL+ IAE++E+ W G + Sbjct: 606 DNLHSRYNRSAVEQAAIAGALNAELASDPARALALANEVAGRLDIIAEETERGWRGDVTT 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + ++R+ RGV+E VL+ + I S +++ + R++E Y T SL I+I+G Sbjct: 666 DGGLRLERMVRGVRELVVLDMALIGSSDARHIDQLTARLKEIYQTPPSLHRREGDIEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+ Sbjct: 726 PRALLDAIFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811 >gi|56695080|ref|YP_165427.1| DNA gyrase subunit B [Ruegeria pomeroyi DSS-3] gi|56676817|gb|AAV93483.1| DNA gyrase, B subunit [Ruegeria pomeroyi DSS-3] Length = 805 Score = 949 bits (2454), Expect = 0.0, Method: Composition-based stats. Identities = 449/805 (55%), Positives = 585/805 (72%), Gaps = 4/805 (0%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MSEIEQPGNEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TV ++ D S +V+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADHVTVKIHADSSVSVADNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F G L V G G+ TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRHGKEHVARFERGDTVEHLRVVGECGDRTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS D+ ++TL+ RLREL+FLNS V+I LID+R E E +FY+GG+ FV YLDR Sbjct: 181 TTFSNLDYVFETLEKRLRELAFLNSGVRIILIDERPAERIETELFYEGGVREFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+M +PI +G RD+I +++AM WND YHE VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSPVMPAPIYFKGERDDIGVEIAMWWNDSYHETVLPFTNNIPQRDGGTHVAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y + S +K++K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 301 INNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L+ W EE+P AK IV K+++A++ R+AAR+AR+LTRRK +D+ L GKL DCSE Sbjct: 361 VNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +L+DYLI+Q + + + I DL +++A ++ + Sbjct: 541 PLYKVARGKSEVYLKDQAALDDYLIHQGVEGAVLKLG-NGEEIVGQDLTRVVEEARQLKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F + +A K+A RL+ IA + E+ W G I Sbjct: 600 VLDAFPTHYPRHIMEQAAVAGAFVAGAVDADLQGVADKVAARLDLIALEYERGWLGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F+ ++E Y L+ I G Sbjct: 660 DHGIRLARILRGVEEVRTLDGPMLRSGEARKTGSFTRSLQEIYTQPAMLVRRDRTQAIHG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P +LL I G KG+++QRYKGLGEMN QLWETTL+PD R+LL+V++ D +ADD+F+ Sbjct: 720 PLTLLKAILDEGEKGLTLQRYKGLGEMNPEQLWETTLDPDARTLLQVRVNDMVEADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDSVEPRREFIQQNALSVENLD 804 >gi|325577000|ref|ZP_08147571.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus parainfluenzae ATCC 33392] gi|325160958|gb|EGC73077.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus parainfluenzae ATCC 33392] Length = 808 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 398/811 (49%), Positives = 538/811 (66%), Gaps = 11/811 (1%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G Sbjct: 1 MSETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGG Sbjct: 61 YCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS L+L I+R+G+++E + G PL V G TGT V F PS Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQGPLTVIGET-QTTGTTVRFWPSP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++ Sbjct: 180 EIFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE--DHFHYEGGIQAFVEYLNKN 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KNPIHPKPFYFSAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRS 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E KK+K S GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 298 LNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESA 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 358 MNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 418 KDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 478 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK +Y+KD + + Y + +L + ++ + + + K Sbjct: 538 PLYKVKKGKQERYIKDNDEMVQYELMLALDSAALHISANAPAMNDLVFEKLVGEYNNVQK 597 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KS 652 LI + + ++ V + ++ + A+ L ++ Sbjct: 598 LITRLSRYYPEPLLQGLVYQPQLTVDLMRNESAVENWANAFVAYLTEKETEAHLYSARTQ 657 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ + ++ G+ + + + F ++ + Sbjct: 658 FNSERQVYEAVITVRKHGIDTDYFINFDFVTGNEFAKISTFGQQVNGLLEEGAYVTRGEK 717 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ + R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I DA Sbjct: 718 TQPVQSFEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAVA 777 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 778 ADQLFTTLMGDEVEPRREFIEMNALRANLDV 808 >gi|295095337|emb|CBK84427.1| DNA gyrase subunit B [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 803 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 551/806 (68%), Gaps = 13/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ D PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYQHGVPDAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDNKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y I +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHANSSAPALAGEPLERLVSEFNATQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI-----N 658 + K +++ + +++ + L + LN E+ W + Sbjct: 599 RRYPKALLKELIYQPTLTEADLSNEQTVTRWVNTLVSELNEK-EQHGSQWKFDVQQNAEQ 657 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + LE + + ++ + + + Sbjct: 658 QFEPIVRVRTHGVDTDYPLEHEFVTGPEYRRICTLGEKLRGLIEDDAFIERGERRQPVAS 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 718 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFT 777 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803 >gi|315635217|ref|ZP_07890494.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter segnis ATCC 33393] gi|315475963|gb|EFU66718.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aggregatibacter segnis ATCC 33393] Length = 806 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 546/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSTTTPE-TYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIVVTIHSDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G PL V G TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQFYSLGDPQAPLAVIGETT-QTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YD L RLRELSFLNS V I LID+R+ + Y+GGI+AFV Y++R K Sbjct: 179 IFTNIEFEYDILAKRLRELSFLNSGVSIRLIDERTDKQ--DHFHYEGGIQAFVEYINRGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDGY EN+ CFTNNIPQ+DGGTHL+G R A+TR + Sbjct: 237 TPIHPKPFYFSAEKDGIGVEIALQWNDGYAENIYCFTNNIPQRDGGTHLAGFRGAMTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMENEGYTKKSKVATSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKSSVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P + KIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQTYLLENPNDVKIIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ ++ + +L ++ + L+N + L + K+ Sbjct: 537 LYKVKKGKQEQYIKDDEAMAEFELAIALENAALYVNENAPGMQGVALQNLASEYLAVQKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSW 653 + ++ +++ + + S A L LN + Sbjct: 597 TTRLSRYYPESVLKELIYQPALTTALMQQESAVNSWADSLVASLNGKETDGRHYSYRLQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + N ++++ G+ + L + ++ ++ K Sbjct: 657 NAERNLYEVVLTVRTHGIDTDYFLNFQFVTGNEYARLIALGEKLVGLLEENAYVMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +T ++ + R+G+ +QRYKGLGEMN QLWETT++P+TR +L+V I DA A Sbjct: 717 VAVTSFEQAIEWLMKESRRGLMIQRYKGLGEMNPEQLWETTMDPNTRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LDI Sbjct: 777 DQLFTTLMGDEVEPRREFIESNALRANLDI 806 >gi|301155295|emb|CBW14761.1| DNA gyrase, subunit B [Haemophilus parainfluenzae T3T1] Length = 808 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 398/811 (49%), Positives = 538/811 (66%), Gaps = 11/811 (1%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G Sbjct: 1 MSETPVTENAYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGG Sbjct: 61 YCSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS L+L I+R+G++YE + G PL + G TGT V F PS Sbjct: 121 LHGVGVSVVNALSDKLQLTIRRQGHVYEQFYHLGEPQGPLTIIGET-QATGTTVRFWPSP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++ Sbjct: 180 EIFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGTE--DHFHYEGGIQAFVEYLNKN 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KNPIHPKPFYFSAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRS 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E KK+K S GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 298 LNNYMESEGLLKKEKVSTSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESA 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 358 MNERMQEYLLENPADAKIIVNQIITAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 418 KDPALSELYLVEGDSAGGSAKSGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 478 ALGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK +Y+KD + + Y + +L + ++ + + + K Sbjct: 538 PLYKVKKGKQERYIKDNDEMVQYELMLALDGAALHISANAPAMNDLVFEKLVSEYNNVQK 597 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KS 652 LI + + ++ V + ++ + A+ L ++ Sbjct: 598 LITRLSRYYPEPLLQGLVYQPQLTVDLMRNESAVENWANAFVAYLTEKETEAHLYSARTQ 657 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ + ++ G+ + + + F ++ + Sbjct: 658 FNSERQVYEAVITVRKHGIDTDYFINFDFVTGNEFAKITAFGQQVNGLLEEGAYVTRGEK 717 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ + R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I DA Sbjct: 718 TQPVQSFEQAVEWLMKESRRGLEIQRYKGLGEMNAEQLWETTMDPNARRMLKVSIKDAVA 777 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 778 ADQLFTTLMGDEVEPRREFIEMNALRANLDV 808 >gi|283787601|ref|YP_003367466.1| DNA gyrase subunit B [Citrobacter rodentium ICC168] gi|282951055|emb|CBG90733.1| DNA gyrase subunit B [Citrobacter rodentium ICC168] Length = 804 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ I+ +++G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKIHRQIYVHGVPQAPLAVTGDT-DKTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLKDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S +S L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGEALEKLVSEYNAAQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 K +++ V D++ + L LN K + + N Sbjct: 599 RRFPKALLKELVYQPTLVEADLADEQKVTRWVNALITELNEKERHGSMWKFDIQHNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ + + ++ + + + Sbjct: 659 LYEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|121998014|ref|YP_001002801.1| DNA gyrase subunit B [Halorhodospira halophila SL1] gi|121589419|gb|ABM61999.1| DNA gyrase subunit B [Halorhodospira halophila SL1] Length = 807 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 408/812 (50%), Positives = 536/812 (66%), Gaps = 14/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I YD++SIQ+L+GLDAV+KRP MYIGDTD +GLHHM++EVLDN+IDE+L G+ Sbjct: 1 MTTEI-TPQYDSESIQVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITVTL+ D S TV+DNGRGIP D+H EEG+ AA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSEITVTLHADHSVTVTDNGRGIPVDIHAEEGVPAAQVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+REG ++ + +G L V G TGT +TF PS Sbjct: 120 HGVGVSVVNALSERLRLVIEREGKVHVQEYADGAPVTSLKVVGETE-QTGTRITFKPSEA 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +NYD L R RELSFLN V++ L D+R+ + Y GGI AFV +L+R+K Sbjct: 179 IFTEVQYNYDILAKRFRELSFLNPGVRVVLKDERTEKE--DVFEYTGGIRAFVEHLNRNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + + RD + +D+AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 TPLHPTVFYVTAWRDGVGVDVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRGALTRTV 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E KK K + G+D REG T+V+S+K PDP+FSSQTK+KLVSSEV+ +VES + Sbjct: 297 NGYLEAEGYLKKLKSTPSGEDVREGLTAVVSVKAPDPKFSSQTKDKLVSSEVKGIVESLL 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ L +L EHP EA+ I ++V+ AS R+AAR+AR++TRRK LDIA LPGKLADC ER Sbjct: 357 SESLQTFLAEHPPEARAIAERVIQASRAREAARKAREMTRRKDALDIAGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP KSE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPAKSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM L+ G +YI +PP Sbjct: 477 LGCGIGRDDFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMRELVERGNVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RGK YVKDE L +YL+ +L IS L + +L Sbjct: 537 LYKIKRGKQEHYVKDERELTEYLLELALDGSALHPGGGAPPISGEALGRLARRYYEAMEL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 I+ D +EQ + D + + +L ++ A + + ++ Sbjct: 597 IEHVSRRWDSAILEQMTTLAPRTEDDITDAQAMQAWFDQLVQQVEA-ATDASMRYRVTVQ 655 Query: 659 NS------DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + +V R G+ +++ S + ++ ++ ++ Sbjct: 656 RGPDGGFQEAIVTRRRHGLDQEYRFNPQFFLSAEYDTLKALASLLDGLLHEGAEVVRGER 715 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T ++ + ++G ++QRYKGLGEMN QLWETT+NP+TR LLRV I DA Sbjct: 716 RRPVTSLREAVEWLMEEAKRGQTIQRYKGLGEMNPDQLWETTMNPETRRLLRVTIDDAVA 775 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 776 ADEIFTTLMGDHVEPRRDFIERNALAVSNLDV 807 >gi|253686413|ref|YP_003015603.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251752991|gb|ACT11067.1| DNA gyrase, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 805 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 546/806 (67%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS LKL I R+G ++E ++ +G+ PL VTG N TGT V F PS + F+ Sbjct: 122 VVNALSEKLKLVIHRDGKLHEQTYKHGVPQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I LID+R + + Y GGI+AFV YL+R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++ G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + + E + A L N LN Sbjct: 600 RRFPRALLNRLIYQPTLSEADLNERENVQAWAESLVNSLNESELHGSTYSFVIHHDEERG 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L + + ++ + + + Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGSEYRKLNQLGEKLRGLIEEDAYIERGERRQPVAS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD+LF+ Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPNSRRMLRVTVKDAIAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805 >gi|304398065|ref|ZP_07379940.1| DNA gyrase, B subunit [Pantoea sp. aB] gi|304354351|gb|EFM18723.1| DNA gyrase, B subunit [Pantoea sp. aB] Length = 802 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 407/804 (50%), Positives = 549/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L+L I+REG +++ +++G+ +PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELTIRREGKVHQQVYVHGVPQSPLAVTGET-DITGTRVRFWPSHETFTNVR 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F YD L RLRELSFLNS V I L DKR + Y+GGI AFV YL+++K P+ Sbjct: 181 DFEYDILAKRLRELSFLNSGVSIRLEDKRDGKN--DHFHYEGGIRAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S + L + D K+IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLETLVSDFNSTQKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660 + + + + S++ + + L + L + + N Sbjct: 599 RRYPMAMLRAMIYHDTLSDLSNEAEVTTWLNGLVSYLTEREAHGSTYLAQVRENRETNLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + LE I + +++ + + + Sbjct: 659 EPVLRVRTHGVDTDYPLEADFIQGPEYRKICALGSQLRGLLEEDAYIERGERRQPVASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 ++ + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIGADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802 >gi|152977818|ref|YP_001343447.1| DNA gyrase subunit B [Actinobacillus succinogenes 130Z] gi|150839541|gb|ABR73512.1| DNA gyrase, B subunit [Actinobacillus succinogenes 130Z] Length = 811 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 417/815 (51%), Positives = 562/815 (68%), Gaps = 16/815 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSENTAE-NYGAGSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CKDIIVTIHEDNSISVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G PL + G + TGT V F PSS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLKIIGDSE-KTGTTVHFWPSSA 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ F YD L+ RLRELSFLNS V I L D+R + Y+GGI+AFV +L+++K Sbjct: 179 IFTKTVFEYDILKKRLRELSFLNSGVSIKLFDERDGKN--DHFHYEGGIQAFVEFLNQNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q P ++ I +++A++WND Y+EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 TPIHQKPFYFTMEKEGIGVEVALQWNDSYNENIYCFTNNIPQRDGGTHLAGFRGALTRTL 296 Query: 301 TSYVEKS-----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +Y++KS S KDK GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+ Sbjct: 297 NAYMDKSGLNKKGKSDKDKVDTSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKGA 356 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES +N+ L +LEE+P +AKII K+++A+ R+AAR+AR++TRRKGVLDIA LPGKLA Sbjct: 357 VESAMNERLQEYLEENPNDAKIIATKIVEAARAREAARKAREMTRRKGVLDIAGLPGKLA 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+G Sbjct: 417 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVG 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALG GIG+D ++ KLRYHKIIIMTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 477 TLITALGCGIGRDEYNPEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVY 536 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + +GK QY+KD+ES+ Y + +L + ++ ++ L N + + Sbjct: 537 IAQPPLYKVKKGKQEQYLKDDESMTQYELAIALEDAALYVNENAPAMNGLMLENLVSEFN 596 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-- 651 + ++I + + + ++ + ++ + A+ L L S Sbjct: 597 GVQQMIARLHRRYPEILLKSLIYYPELTTSILEDQSAVENWANSLVKILEEQDTDSNHYR 656 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 ++G N DI++ A G+ ++L+ + S +I+ + Sbjct: 657 IRTQFNGERNMYDIVLTVRAHGIDTNYLLDFNFAHSNEYARVVNLGKKIDGLLEDTAYIQ 716 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K I+G ++ + + R+G+++QRYKGLGEMN QLWETT++P+ R +L+V I Sbjct: 717 RGETKKPISGFEEGINWLVAQSRRGLTVQRYKGLGEMNPEQLWETTMDPEARHMLQVTIK 776 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +AD LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DAVEADQLFTTLMGDEVEPRRDFIETNALRANLDI 811 >gi|322830737|ref|YP_004210764.1| DNA gyrase, B subunit [Rahnella sp. Y9602] gi|321165938|gb|ADW71637.1| DNA gyrase, B subunit [Rahnella sp. Y9602] Length = 804 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 398/806 (49%), Positives = 549/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIQV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQ 185 VVNALS L+L I+REG ++ ++++G +PL V G + TGT V F PS + Sbjct: 122 VVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIGDT-DVTGTTVRFWPSFNTFTNHT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L+DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVAIRLLDKRDGKN--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G RSA+TR + +Y++ Sbjct: 239 TVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRSAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 DYLMENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ ++ ++ L + + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIAMDGATLHANAHAPALAGEPLEKLVAEHHSVQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + + +DQ + L RLN + + Sbjct: 599 RRYPRALLNNLIYQPTLPGSDLTDQAKVQTWIESLVARLNEKEQHGSSYSAIVRENREHQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + ++ + + +T Sbjct: 659 LFEPVLRIRTHGVDTDYDLDADFIQGGEYRKICALGEQLRGLIEEDAFIERGERRQPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P+ R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPEQRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|330827704|ref|YP_004390656.1| DNA gyrase subunit B [Aeromonas veronii B565] gi|328802840|gb|AEB48039.1| DNA gyrase subunit B [Aeromonas veronii B565] Length = 803 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 412/810 (50%), Positives = 535/810 (66%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSENT----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V DNGRGIP D+H+EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CSDILVKIHSDGSVSVRDNGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R G++YE ++ G PL G + TGTEV F PS Sbjct: 117 HGVGVSVVNALSDKLLLTIRRNGHVYEQTYHLGEPQAPLKQIGDST-GTGTEVRFWPSPA 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS F+Y+ L RLRELSFLNS V I L D+R + RE Y+GGI+AFV YL+++K Sbjct: 176 IFSDTLFHYEILAKRLRELSFLNSGVSIRLQDER--DGREAHFCYEGGIKAFVEYLNQNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +D I +++AM+WND Y E V CFTNNIPQ+DGGTHL G R+ALTR + Sbjct: 234 TPIHPKVFHFTTEQDGIGVEVAMQWNDAYQEGVYCFTNNIPQRDGGTHLVGFRTALTRTL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY++K SKK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 294 NSYMDKEDYSKKAKSAASGDDVREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQAM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E+P +AKI+V K++DA+ R+AAR+AR+LTRRKG LDIA LPGKLADC E+ Sbjct: 354 GEKLADFLLENPGDAKIVVNKIIDAARAREAARKARELTRRKGALDIAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP +I G++YI +PP Sbjct: 474 LGCGIGRDEYNPDKLRYHNIIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KDE++L Y +L +S I L ++ + L Sbjct: 534 LYKVKKGKQEQYLKDEDALLQYQTAMALDGATLHVNESAPAIGGEALERLVNQHRSVSHL 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNF----IAEKSEKSWH 654 I + + Q + N + + + + LN I + + Sbjct: 594 ITRMSRRAPEAVLTQLIYQPELNEALLNSESDLLVWCQGMEAVLNESNHGIQYQIQVRRD 653 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + GV ++ L + S + I + Sbjct: 654 EERSLYVPHAVVRQHGVDREYPLSYDFLQSGEYRQLVSLGKEIANLIEEGGFIKRGEKVK 713 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + ++ + G++GI +QRYKGLGEMN QLWETT++P+ R +LRV I DA AD Sbjct: 714 PVANFVEAVEWLMGEGKRGIYIQRYKGLGEMNPDQLWETTMDPEARRMLRVTIDDAVGAD 773 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFS LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 QLFSTLMGDAVEPRRDFIETNALRVANLDV 803 >gi|315178623|gb|ADT85537.1| DNA gyrase, subunit B [Vibrio furnissii NCTC 11218] Length = 805 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 555/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + L I R G ++ ++ +G+ + PL V G + +GT V F PS++ F+ + Sbjct: 122 VVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L RLRELSFLNS V I L+D+R + ++ Y+GGI+AFV++L+R+K P+ + Sbjct: 181 FHYEILAKRLRELSFLNSGVSIKLVDER-EDNKQDHFMYEGGIQAFVNHLNRNKTPIHEK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++ Sbjct: 240 VFHFNSEREDGISVEVAMQWNDGFQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ Sbjct: 300 KECYTKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLN 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P EAKI+ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 DFLAENPSEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDEE++ Y I ++ ++ L + KLI+ Sbjct: 540 KGKQEQYIKDEEAMNQYQIALAMDNAELHVNADAPALAGAPLEKLVQQYNAAIKLIERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + I + + E D+ + +L ++LN + + + N Sbjct: 600 RRYPHSLIHEFIYMPRMTAEKCQDEAGAQAWTQQLIDQLNAKEVGASQYSFTLEHNAEHN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +K GV +++L + S S + + + Sbjct: 660 VYSPRIKVRTHGVTHEYLLSVDLLNSKEYGKLAELSEAMHGLIEDGAYIKRGERTQPVAS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD+LF+ Sbjct: 720 FAAALDWLIKESRRGLSVQRYKGLGEMNPDQLWETTMDPETRRMMQVTIDDAVGADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LD+ Sbjct: 780 TLMGDQVEPRRAFIENNALKVANLDV 805 >gi|22127978|ref|NP_671401.1| DNA gyrase subunit B [Yersinia pestis KIM 10] gi|45443725|ref|NP_995264.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001] gi|21961123|gb|AAM87652.1|AE014012_9 DNA gyrase subunit B, type II topoisomerase [Yersinia pestis KIM 10] gi|45438595|gb|AAS64141.1| DNA gyrase subunit B [Yersinia pestis biovar Microtus str. 91001] Length = 805 Score = 948 bits (2450), Expect = 0.0, Method: Composition-based stats. Identities = 400/808 (49%), Positives = 548/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I Sbjct: 1 MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 LVTIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALS L+L I+REG ++E ++ G+ PL V G TGT V F PS F + Sbjct: 121 VSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTN 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 180 NTEFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY Sbjct: 238 HPKVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ Sbjct: 298 MDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY Sbjct: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD++++E Y + +L ++ L + + + K I Sbjct: 538 VKKGKQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFI-----AEKSEKSWHGS 656 + + + + E ++E+ L LN + S + Sbjct: 598 MERRYPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +++ GV + L+ I + + +++ + ++ + Sbjct: 658 RQLFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD L Sbjct: 718 SSFEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALRAANIDI 805 >gi|291615640|ref|YP_003518382.1| GyrB [Pantoea ananatis LMG 20103] gi|291150670|gb|ADD75254.1| GyrB [Pantoea ananatis LMG 20103] Length = 803 Score = 947 bits (2449), Expect = 0.0, Method: Composition-based stats. Identities = 404/806 (50%), Positives = 549/806 (68%), Gaps = 10/806 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I Sbjct: 1 MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG +++ +++G+ + PL VTG + TGT + F PS D F+ Sbjct: 121 VSVVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTN 179 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF YD L RLRELSFLNS V I L + + R Y+GGI AFV YL+++K P+ Sbjct: 180 VTDFEYDILAKRLRELSFLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y Sbjct: 238 HPTVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LAEYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG Sbjct: 418 LSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E++ Y I +L S + L + + K+IK Sbjct: 538 VKKGKQEQYIKDDEAMLQYQIAIALDGTSLHTTASAPALGGEPLETLVAEFNSTQKMIKR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSIN 658 + + + + S++ S + L + L + + N Sbjct: 598 MERRYPMAMLRALIYHDTLSDISNEAQVTSWINGLVSYLTAREAHGSTYLAQVRENREQN 657 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ + + ++ + + ++ Sbjct: 658 VFEPVLRVRTHGVDTDYPLDAEFLQGGEYRKICALGGKLRGLLEEDAYIERGERRQPVSS 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ Sbjct: 718 FEQAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFT 777 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 778 TLMGDAVEPRRAFIEENALKAANIDI 803 >gi|270264122|ref|ZP_06192389.1| DNA gyrase subunit B [Serratia odorifera 4Rx13] gi|270041771|gb|EFA14868.1| DNA gyrase subunit B [Serratia odorifera 4Rx13] Length = 804 Score = 947 bits (2449), Expect = 0.0, Method: Composition-based stats. Identities = 401/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 VIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G PL V G + TGT V F PS + F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNNV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 DYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I ++ + ++ L + + + KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIAMDGATLHTNANAPALAGEPLEKLVAEHYSVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + + N DQ L LN + S + Sbjct: 599 RRYPRALLNNLIYQPTLNESDLSDQGKVQVWIESLVKLLNDNEQHGSSYDSVIFENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ + ++ + + + Sbjct: 659 MFEPVLRIRTHGVDTDYPLDFEFFHGGEYRKICQLGEKLRGLIEEDAFIERGERRQPVDS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|89074699|ref|ZP_01161157.1| DNA gyrase subunit B [Photobacterium sp. SKA34] gi|89049463|gb|EAR55024.1| DNA gyrase subunit B [Photobacterium sp. SKA34] Length = 805 Score = 947 bits (2449), Expect = 0.0, Method: Composition-based stats. Identities = 408/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGS +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDGSVSVSDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS ++L I+R G+ Y+ + +G+ D PL V G TGT + F PS D F+ + Sbjct: 122 VVNALSEKVELTIQRAGHTYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L RLRELSFLNS V I+L D+R E +E Y+GGI AFV +L+R+K P+ Sbjct: 181 FHYEILAKRLRELSFLNSGVSINLSDER-EEGKEDHFMYEGGIRAFVEHLNRNKTPIHPK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 RD+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + S+++ Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK + K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E + Y +L D ++ L + + KLI+ Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAMTGTALESLVTQYNAGMKLIERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V + E E + + L LN E N Sbjct: 600 RRYPSLMLNEFVYQPRLSTEMMAEEAQVEAWLTPLIAALNAKQSGESQYSFEIIRDEENN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V GV +++L + S S + + K ++ Sbjct: 660 VYLPKVVVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALNGLLDDTAFVQRGERKQAVSS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +++V I DA AD+LF+ Sbjct: 720 FKVALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI++N+L LD+ Sbjct: 780 CLMGDQVEPRRNFIEDNALKVANLDV 805 >gi|126730159|ref|ZP_01745971.1| DNA gyrase subunit B [Sagittula stellata E-37] gi|126709539|gb|EBA08593.1| DNA gyrase subunit B [Sagittula stellata E-37] Length = 807 Score = 947 bits (2449), Expect = 0.0, Method: Composition-based stats. Identities = 451/805 (56%), Positives = 581/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L Sbjct: 3 MSDQPSEAYEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 62 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ D S +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 63 HADYVHVKIHADSSVSVRDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 122 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R G + F +G L V G A + GTEV FL S+ Sbjct: 123 LHGVGVSVVNALSVWLELRIWRNGKEHYAKFEHGETSEHLRVVGDAEGEQGTEVRFLAST 182 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS D+++ TL+ RLREL+FLNS V+I L D R EP I + Y+GG+ FV YLDR Sbjct: 183 DTFSNLDYDFHTLEKRLRELAFLNSGVRIILDDDRPAEPLHIELHYEGGVREFVKYLDRS 242 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ +M PI ++G +D I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTRQ Sbjct: 243 KQAVMPDPIYMEGEKDGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRQ 302 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y ++S +K++K + GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 303 LQKYAQESGIAKREKINFTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 362 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L W EE+P EAK I K+++A+M R+AAR+AR+LTRRK +D++ KL DCSE Sbjct: 363 MNEKLGEWFEENPNEAKQITGKIIEAAMAREAARKARELTRRKTAMDVSFNAAKLKDCSE 422 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D K+ELFLVEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 423 KDASKTELFLVEGDSAGGSAQTGRDRRTQAILPLRGKILNVERARFDRMLGSQEIGNLVM 482 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 483 ALGTGIGRDEFNISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ +LEDYLI Q + F + VI DL +++A ++ + Sbjct: 543 PLYKVARGKSEVYLKDQTALEDYLIQQGIENAQL-FQGNGEVIVGQDLVRVVEEARQLKR 601 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA I+G F + +A K+A RL+ +A + E+ W G I Sbjct: 602 VLDAFPTHYPRHILEQAAIAGAFVPGAVDSDLQGVADKVAARLDLVALEYERGWIGRITQ 661 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + + RI RGV+E L+G + S ++ + ++ Y + +L + I G Sbjct: 662 DKGVRLARILRGVEEVRTLDGPMLRSGEARRTGTLTESLQAVYGSPATLERKDRRQLIHG 721 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I G KG+S+QRYKGLGEMN QLWETTL+P+ R+LL+V I D ++ADDLF+ Sbjct: 722 PLELLKAILEEGEKGLSLQRYKGLGEMNPDQLWETTLDPNARTLLQVTIDDMTEADDLFT 781 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRR+FIQ+N+L LD Sbjct: 782 KLMGDVVEPRRDFIQQNALSVENLD 806 >gi|90581121|ref|ZP_01236920.1| DNA gyrase subunit B [Vibrio angustum S14] gi|90437642|gb|EAS62834.1| DNA gyrase subunit B [Vibrio angustum S14] Length = 805 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 550/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I V Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGS +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKV GGLHGVGVS Sbjct: 62 TIHEDGSVSVSDDGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVPGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS ++L I+R G+IY+ + +G+ D PL V G TGT + F PS D F+ + Sbjct: 122 VVNALSEKVELTIQRAGHIYQQVYRHGVPDAPLAVIGDTE-KTGTRIRFWPSEDTFTNIE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L RLRELSFLNS V I+L D+R E +E Y+GGI AFV +L+R+K P+ Sbjct: 181 FHYDILAKRLRELSFLNSGVSINLSDER-EEGKEDHFMYEGGIRAFVEHLNRNKTPIHPK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 RD+ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + S+++ Sbjct: 240 VFHFDSERDDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNSFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L+ Sbjct: 300 KEGYSKKAKAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMNEKLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK + K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLLENPSDAKTVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPAVS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E + Y +L D ++ L + + KLI+ Sbjct: 540 KGKQEQYIKDDEDMNQYQTTLALDNASLFANDGAPAMTGTALESLVTQYNAGIKLIERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V + E E + + L LN E N Sbjct: 600 RRYPSLMLNEFVYQPRLSTEMMAEEAQVEAWLTPLIAALNAKQSGESQYSFEVIRDEENN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V GV +++L + S S + + K ++ Sbjct: 660 VYLPKVVVRTHGVDHEYLLSFDLLNSKEYAKIADLSEALNGLLDDTAFVQRGERKQAVSS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +++V I DA AD+LF+ Sbjct: 720 FKGALEWLNKESRRGLSLQRYKGLGEMNPEQLWETTMDPESRRMMQVTINDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+EN+L LD+ Sbjct: 780 CLMGDQVEPRRNFIEENALKVANLDV 805 >gi|86147178|ref|ZP_01065494.1| DNA gyrase subunit B [Vibrio sp. MED222] gi|218708101|ref|YP_002415722.1| DNA gyrase subunit B [Vibrio splendidus LGP32] gi|85835062|gb|EAQ53204.1| DNA gyrase subunit B [Vibrio sp. MED222] gi|218321120|emb|CAV17070.1| DNA gyrase subunit B [Vibrio splendidus LGP32] Length = 805 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 415/812 (51%), Positives = 552/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CNDIIVTIHEDSSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIGDT-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I LIDKR E + Y+GGI+AFV +L+ +K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P++Q RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R+ALTR Sbjct: 234 TPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEST 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAKI+ K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y ++ +L + L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAELHVNPEAPAFAGEGLEKLVQQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS-----EKS 652 L+ + + + + + E D + + +L +LN + E Sbjct: 594 LVDRMSRRYPRALVHELIYVPRLTAEQCHDDAVVEAWGKQLVEQLNGKEAGASQYSLEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + VL I S S ++ + Sbjct: 654 KHEELGLSVPKIVVRTHGVTHEHVLSIDLINSKEFGKLADLSEALDGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQEVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADLLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|294638324|ref|ZP_06716577.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685] gi|291088577|gb|EFE21138.1| DNA gyrase, B subunit [Edwardsiella tarda ATCC 23685] Length = 804 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 408/805 (50%), Positives = 547/805 (67%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G+++E + +G+ PL + G TGT V F PS FS Sbjct: 122 VVNALSEKLELVIRRDGHVHEQIYHHGVPAAPLKMVGDTE-QTGTRVRFWPSMQTFSNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKRND--REDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 +KK+K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ Sbjct: 299 SEGYTKKNKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L + ++ L + + ++ KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGAALHTNAAAPALAGEPLEKLVAEHYQVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS-----WHGSIN 658 + K + Q + + DQ L LN + + Sbjct: 599 RRYPKAVLNQLIYQPTLSEADLSDQAAVEQWIGTLVTTLNEKEQHGSVYSVQIVENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + V+ GV ++ + + + +++ + + + Sbjct: 659 MFEPAVRVRTHGVDTDYLFDFDFVHGAEYRRICTLGDKLRGLVEESAFVERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+ R +LRV I DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPEGRRMLRVTIKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALD 802 LMGD VEPRR FI+EN+L + LD Sbjct: 779 TLMGDAVEPRRAFIEENALKAANLD 803 >gi|51598224|ref|YP_072415.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108810130|ref|YP_654046.1| DNA gyrase subunit B [Yersinia pestis Antiqua] gi|108814112|ref|YP_649879.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|145597328|ref|YP_001161403.1| DNA gyrase subunit B [Yersinia pestis Pestoides F] gi|150260971|ref|ZP_01917699.1| DNA gyrase subunit B [Yersinia pestis CA88-4125] gi|153947743|ref|YP_001403092.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 31758] gi|162420836|ref|YP_001608445.1| DNA gyrase subunit B [Yersinia pestis Angola] gi|165926159|ref|ZP_02221991.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165936896|ref|ZP_02225462.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009503|ref|ZP_02230401.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213310|ref|ZP_02239345.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401541|ref|ZP_02307035.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422871|ref|ZP_02314624.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425446|ref|ZP_02317199.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022266|ref|YP_001718771.1| DNA gyrase subunit B [Yersinia pseudotuberculosis YPIII] gi|186893348|ref|YP_001870460.1| DNA gyrase subunit B [Yersinia pseudotuberculosis PB1/+] gi|218931071|ref|YP_002348946.1| DNA gyrase subunit B [Yersinia pestis CO92] gi|229839801|ref|ZP_04459960.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841886|ref|ZP_04462042.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229896763|ref|ZP_04511926.1| DNA gyrase subunit B [Yersinia pestis Pestoides A] gi|229904651|ref|ZP_04519762.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|270488362|ref|ZP_06205436.1| DNA gyrase, B subunit [Yersinia pestis KIM D27] gi|294505622|ref|YP_003569684.1| DNA gyrase subunit B [Yersinia pestis Z176003] gi|51591506|emb|CAH23178.1| DNA gyrase subunit B [Yersinia pseudotuberculosis IP 32953] gi|108777760|gb|ABG20279.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|108782043|gb|ABG16101.1| DNA gyrase subunit B [Yersinia pestis Antiqua] gi|115349682|emb|CAL22663.1| DNA gyrase subunit B [Yersinia pestis CO92] gi|145209024|gb|ABP38431.1| DNA gyrase subunit B [Yersinia pestis Pestoides F] gi|149290379|gb|EDM40456.1| DNA gyrase subunit B [Yersinia pestis CA88-4125] gi|152959238|gb|ABS46699.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis IP 31758] gi|162353651|gb|ABX87599.1| DNA gyrase, B subunit [Yersinia pestis Angola] gi|165915138|gb|EDR33749.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922019|gb|EDR39196.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991425|gb|EDR43726.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205608|gb|EDR50088.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958263|gb|EDR55284.1| DNA gyrase, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048923|gb|EDR60331.1| DNA gyrase, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055460|gb|EDR65253.1| DNA gyrase, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748800|gb|ACA66318.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis YPIII] gi|186696374|gb|ACC87003.1| DNA gyrase, B subunit [Yersinia pseudotuberculosis PB1/+] gi|229678769|gb|EEO74874.1| DNA gyrase subunit B [Yersinia pestis Nepal516] gi|229691225|gb|EEO83278.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. India 195] gi|229696167|gb|EEO86214.1| DNA gyrase subunit B [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700201|gb|EEO88237.1| DNA gyrase subunit B [Yersinia pestis Pestoides A] gi|262363786|gb|ACY60507.1| DNA gyrase subunit B [Yersinia pestis D106004] gi|262367723|gb|ACY64280.1| DNA gyrase subunit B [Yersinia pestis D182038] gi|270336866|gb|EFA47643.1| DNA gyrase, B subunit [Yersinia pestis KIM D27] gi|294356081|gb|ADE66422.1| DNA gyrase subunit B [Yersinia pestis Z176003] gi|320017424|gb|ADW00996.1| DNA gyrase subunit B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 804 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 400/806 (49%), Positives = 547/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGETE-QTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L ++ L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHTNAHAPALAGEPLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFI-----AEKSEKSWHGSIN 658 + + + + E ++E+ L LN + S + Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLGNKEVVTQWIDSLVVLLNEKEHHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEDGAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|301169283|emb|CBW28880.1| DNA gyrase, subunit B [Haemophilus influenzae 10810] Length = 806 Score = 947 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLSRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|300719138|ref|YP_003743941.1| DNA gyrase subunit B [Erwinia billingiae Eb661] gi|299064974|emb|CAX62094.1| DNA gyrase subunit B [Erwinia billingiae Eb661] Length = 802 Score = 947 bits (2447), Expect = 0.0, Method: Composition-based stats. Identities = 401/804 (49%), Positives = 543/804 (67%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG ++ +++G+ PL VTG + TGT V F PS F+ Sbjct: 122 VVNALSEKLELTIRREGKVHNQIYVHGVPQAPLHVTGET-DLTGTRVRFWPSHQTFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF Y+ L RLRELSFLNS V I L + + R+ Y+GGI+AFV YL+++K P+ Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIKL--EDKRDARQDHYHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + +Y++ Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y I +L + L + + K+IK Sbjct: 539 KGKQEQYIKDDDAMDQYQIAIALDGATLHTNAEAPALGGAPLETLVSEFNSTRKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660 + + + + S+Q S L LN + + + Sbjct: 599 RRYPVALLNSLIYHSTLSDLSEQATVQSWIDGLIVMLNEKEQHGSSYSGLVRENLEQHIF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +V+ GV + L+ + + ++ + + I Sbjct: 659 EPIVRIRTHGVDTDYPLDNEFVSGGEYRKICALGEKLRGLIEEDAFIERGERRQPIESFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+++QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ L Sbjct: 719 QAMDWLVKESRRGLTVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAIAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802 >gi|119383170|ref|YP_914226.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222] gi|119372937|gb|ABL68530.1| DNA gyrase subunit B [Paracoccus denitrificans PD1222] Length = 812 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 452/813 (55%), Positives = 584/813 (71%), Gaps = 11/813 (1%) Query: 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ Q S Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+ EV+DN IDE+L G Sbjct: 1 MTEPAPQTSDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVTEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + V ++ DGS +V DNGRGIP D+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADFVRVKIHADGSVSVRDNGRGIPVDMHPTEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178 LHGVGVSVVNALS WL+LRI R G + F NG L V G A + GTEV FL S Sbjct: 121 LHGVGVSVVNALSDWLELRIWRGGKEHYARFENGDTVEHLRVVGDAEPGEKGTEVRFLAS 180 Query: 179 SD------IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 S F ++++Y L++RLREL+FLNS V+I L D+R EP ++Y+GG+ F Sbjct: 181 SKEDRPDGTFLNREYSYKVLENRLRELAFLNSGVRIILEDERPAEPLRTELYYEGGVREF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V ++DR K P+M PI I G R+ I I++AM WND YHE VL FTNNIPQ+DGGTHL+G Sbjct: 241 VKFIDRSKTPVMPEPIFITGERNGIGIEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR I +Y + S ++K+K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RGALTRVINNYAQSSGAARKEKVDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VE + + L+ W EE+P EAK I+ K+++A++ R+AAR+AR+LTRRK +D+ASLPG Sbjct: 361 RPAVEGLIGEKLAEWFEENPAEAKSILGKIIEAALAREAARKARELTRRKTAMDVASLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC E+DP SELF+VEGDSAGGSAKQGRSR+NQA+LPLRGKILNVERARFD+MLSS Sbjct: 421 KLADCQEKDPALSELFIVEGDSAGGSAKQGRSRQNQAVLPLRGKILNVERARFDRMLSSD 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 +IGTLITALGTGIG+D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 481 QIGTLITALGTGIGRDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEAG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LYI +PPLY ++RG+S Y+KDE +LEDYLI Q + + ++ DL ++ Sbjct: 541 HLYIAQPPLYKVSRGRSEVYLKDEAALEDYLIEQGVDGASL-RLGNGETLTGADLARVVE 599 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +A + ++++ + ++ EQA I+G +A+ +A RL+ IAE+ E+ Sbjct: 600 EARVVRRILRAYPTHYPPHITEQAAIAGALVQGRVDADAQGVANAVAQRLDMIAEEYERG 659 Query: 653 WHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 W G ++ I + R+ RGV+E L+G + S S+ ++ + + Y LI Sbjct: 660 WTGRPTQDAGIRLTRLLRGVEESRTLDGPMLRSAESRRLGAMTDALRDVYGQTAQLIRKD 719 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 I I GP SLL IF G KG+S+QRYKGLGEMN QLWETTL+P R++L+V++ D Sbjct: 720 RGIPIHGPMSLLQAIFLEGEKGLSLQRYKGLGEMNPEQLWETTLDPAARTMLQVRVEDLG 779 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +ADD+F++LMGD VEPRR+FIQ+N+L LDI Sbjct: 780 EADDIFTKLMGDVVEPRRDFIQQNALSVENLDI 812 >gi|2160009|dbj|BAA20341.1| DNA gyrase subunit B [Escherichia coli] Length = 804 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQG +R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGGNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P+ +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPERCRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|148827759|ref|YP_001292512.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] gi|148719001|gb|ABR00129.1| DNA gyrase subunit B [Haemophilus influenzae PittGG] Length = 806 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLSRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|157368284|ref|YP_001476273.1| DNA gyrase subunit B [Serratia proteamaculans 568] gi|157320048|gb|ABV39145.1| DNA gyrase, B subunit [Serratia proteamaculans 568] Length = 804 Score = 946 bits (2445), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G PL V G + TGT V F PS + F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGET-DQTGTTVRFWPSYETFTNNV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 DYLMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ ++ S ++ L + + + KLI Sbjct: 539 KGKQEQYIKDDEAMDQYQISIAMDGATLHTNASAPALAGEPLEKLVAEHYSVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + + DQ + L LN + S + Sbjct: 599 RRYPRALLNNLIYQPTLAEGDLSDQAKVKTWIDSLVKLLNDKEQHGSSYDSVIFENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + ++ + + + Sbjct: 659 MFEPVLRIRTHGVDTDYALDFDFIHGGEYRKICVLGEKLRGLIEEDAFIERGERRQPVES 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|260581013|ref|ZP_05848836.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW] gi|260092372|gb|EEW76312.1| DNA gyrase, B subunit [Haemophilus influenzae RdAW] Length = 806 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISTNAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLNRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|115499633|dbj|BAF33490.1| DNA gyrase subunit B [Listonella anguillarum] Length = 804 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 404/811 (49%), Positives = 547/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPTDLH+EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDSSVSVSDDGRGIPTDLHEEEQVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G+ PL V G + TGT + F PS++ Sbjct: 116 HGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVGET-DKTGTTLRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L D+R E ++ Y+GGI+AFV +L+R+K Sbjct: 175 TFTNIEFHYDILAKRLRELSFLNSGVSIKLFDER-EEDKKDHFRYEGGIKAFVGHLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGG HL+G R ALTR Sbjct: 234 TPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGAHLAGFRGALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++++K SKK + + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNTFMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLAEFLAENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y + +L ++ L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVALALDGASLHVNPQAPRLAGEALETLVKQYNVAIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA----EKSEKSW 653 L++ + I + + + D + + +L +LN E Sbjct: 594 LVERMSRRYPYALIHEFIYMPRIIVDQCADSAVVEAWGKQLVEQLNAKEVGATYSIETEH 653 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + + GV Q +L + S S + + Sbjct: 654 NADLGIYQPKIVVRTHGVTHQHLLSADLLNSKEYSKLADLSEALYGLVEEGAYIQRGERI 713 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +L+V I DA A Sbjct: 714 QPVDNFVDALNWLIKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMLQVTIEDAVGA 773 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D+LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 DELFTTLMGDQVEPRRAFIEENALKVANLDV 804 >gi|238797842|ref|ZP_04641334.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969] gi|238718258|gb|EEQ10082.1| DNA gyrase subunit B [Yersinia mollaretii ATCC 43969] Length = 804 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 550/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS + F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL ++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFVEYLSKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E+Y ++ +L ++ L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEEYQMSLALDGAALHINAHAPALAGEPLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E ++E+ L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLLEEDLSNKEVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEDAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|239993753|ref|ZP_04714277.1| DNA gyrase subunit B [Alteromonas macleodii ATCC 27126] Length = 806 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 414/812 (50%), Positives = 555/812 (68%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MS---AENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITV ++ DGS +VSD+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEITVLIHSDGSVSVSDDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS LKLRI+R G +E + +G+ PL VTG + TGT + F PSSD Sbjct: 118 HGVGVSVVNALSSRLKLRIRRGGKAHEQEYHHGVPQAPLAVTGDT-DKTGTMIRFWPSSD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ ++YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL+ K Sbjct: 177 TFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIKAFVEYLNEKK 234 Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TPVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 295 LNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESA 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ +L E+P E+KII K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 355 MNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +P Sbjct: 475 ALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+++L +YL + ++ D IS L N + ++K Sbjct: 535 PLYKVKKGKQEQYLKDDDALTNYLTSIAIDGASLHTSDEDPGISGVGLENLVKQYQSVEK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNFIAE-KSEKS 652 +I + + + + + N E + + +L R N A + E Sbjct: 595 MIARMKRLMPASILYRMLYTPTLNLEDLKDESALEHVAKHFVEQLTERENDGATYRYEIR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ I + G+ +++++ I S + + + I + + Sbjct: 655 TDAELSEYYITIIMRMHGIDYEYIIDHEFIESSEYQRLKELNLAINDMMGKDAYIQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + + L+ + + ++G +QRYKGLGEMN QLWETT++P++R +L+V I DA Sbjct: 715 RQPVESFKEALEWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIG 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 775 CDQLFTTLMGDQVEPRREFIEANALKVENLDV 806 >gi|327395906|dbj|BAK13328.1| DNA gyrase subunit B GyrB [Pantoea ananatis AJ13355] Length = 802 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 404/804 (50%), Positives = 548/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG +++ +++G+ + PL VTG + TGT + F PS D F+ Sbjct: 122 VVNALSQKLELTIRREGKVHQQIYLHGVPEAPLAVTGDT-DATGTRIRFWPSHDTFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF YD L RLRELSFLNS V I L + + R Y+GGI AFV YL+++K P+ Sbjct: 181 DFEYDILAKRLRELSFLNSGVSIRL--EDKRDARNDHFHYEGGIRAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E++ Y I +L S + L + + K+IK Sbjct: 539 KGKQEQYIKDDEAMLQYQIAIALDGTSLHTTVSAPALGGEPLETLVAEFNSTQKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660 + + + + S++ S + L + L + + N Sbjct: 599 RRYPMAMLRALIYHDTLSDISNEAQVTSWINGLVSYLTAREAHGSTYLAQVRENREQNVF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ + + ++ + + ++ Sbjct: 659 EPVLRVRTHGVDTDYPLDAEFLQGGEYRKICALGGKLRGLLEEDAYIERGERRQPVSSFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIDWLEKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAIAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802 >gi|308188762|ref|YP_003932893.1| DNA gyrase subunit B [Pantoea vagans C9-1] gi|308059272|gb|ADO11444.1| DNA gyrase subunit B [Pantoea vagans C9-1] Length = 802 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 404/804 (50%), Positives = 550/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L+L I+REG +++ +++G+ + PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELTIRREGKVHQQIYVHGVPEAPLAVTGDT-DITGTRVRFWPSYETFTNVR 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 DFEYEILAKRLRELSFLNSGVSIRLEDKRDGKT--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 TVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S + L + D K+IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNASAPALGGEPLETLVSDFNSTQKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSINNS 660 + + + + S++ + + L + L + + +N Sbjct: 599 RRYPMAMLRAMIYHDTLSDLSNEAEVTTWLNGLVSYLTEREAHGSTYLAQVRENRELNLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + LE + + ++ + + + Sbjct: 659 EPVLRVRTHGVDTDYPLEAEFVQGPEYRKICALGGKLRGLLEEDAYIERGERRQPVASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 ++ + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIKDAIGADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALKAANIDI 802 >gi|123444339|ref|YP_001008304.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122091300|emb|CAL14186.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 804 Score = 945 bits (2443), Expect = 0.0, Method: Composition-based stats. Identities = 400/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINADAPPLVGEHLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E D+E L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLSDKEAVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|256821232|ref|YP_003145195.1| DNA gyrase subunit B [Kangiella koreensis DSM 16069] gi|256794771|gb|ACV25427.1| DNA gyrase, B subunit [Kangiella koreensis DSM 16069] Length = 808 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 409/814 (50%), Positives = 549/814 (67%), Gaps = 17/814 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CTDIYVTIHSDNSVSVRDNGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+R G YE +++G+ PL V G A TGTE+ F PS Sbjct: 118 HGVGVSVVNALSEELKLTIRRAGKRYEQIYVHGVPQAPLEVVGDAE-TTGTEIRFKPSDK 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +++YD L RLRELSFLNS V I L D+RS + Y+GGI+AFV YL+ K Sbjct: 177 TFTNTEYHYDILAKRLRELSFLNSGVGIRLADERSGKQ--DHFMYEGGIKAFVEYLNSKK 234 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ + R+ +++++AM+WNDG+ E++ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 235 TPIHEKVFHFTHEREEDGVTVEVAMQWNDGFQESIFCFTNNIPQRDGGTHLAGFRAALTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +++E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 GLNNFMENEGYNKKGKVNTTGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVEQ 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC Sbjct: 355 AMGEHLKDFLLENPGEAKSVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLI Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG++ FD +K RYH+IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI + Sbjct: 475 TALGCGIGREEFDADKTRYHRIIIMTDADVDGAHIRTLLLTFFYRQVPQLIERGYIYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK QY+KD+++LE+YL +L+ IS L +++ + Sbjct: 535 PPLYKVKKGKQEQYLKDDDALENYLTQTALNNTELYISKDAPAISGEGLERLVNEYRDVQ 594 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHG- 655 I+ + + + + + LA +LN + ++ Sbjct: 595 TTIRRLAQLYPSNILNSMIYHPTLKTDDLKSEPKVKEWMDTLAVKLNKDQKSGAVRFNFN 654 Query: 656 -----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + + GV+ +++L S K + ++E + Sbjct: 655 VRKDNELEHYLPHFVMFHHGVESEYLLSTEFFASGDYKKISLLGEKLETLIEEGAFVKRG 714 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 +I LD + S R+G ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 EKIQEIESFKEALDWLMSEARRGQAIQRYKGLGEMNPGQLWETTMDPAGRRMLQVTIEDA 774 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 775 VAADQLFTTLMGDQVEPRREFIENNALSVSNLDV 808 >gi|145635346|ref|ZP_01791048.1| DNA gyrase subunit B [Haemophilus influenzae PittAA] gi|145267352|gb|EDK07354.1| DNA gyrase subunit B [Haemophilus influenzae PittAA] Length = 806 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 544/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLSRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRNFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|145628949|ref|ZP_01784749.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21] gi|144979419|gb|EDJ89105.1| DNA gyrase subunit B [Haemophilus influenzae 22.1-21] Length = 806 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|332163518|ref|YP_004300095.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318608022|emb|CBY29520.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667748|gb|ADZ44392.1| DNA gyrase subunit B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861742|emb|CBX71916.1| DNA gyrase subunit B [Yersinia enterocolitica W22703] Length = 804 Score = 945 bits (2442), Expect = 0.0, Method: Composition-based stats. Identities = 400/806 (49%), Positives = 544/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINAEAPPLVGEHLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E D+E L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLKEEDLSDKEAVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|85057982|ref|YP_453684.1| DNA gyrase subunit B [Sodalis glossinidius str. 'morsitans'] gi|84778502|dbj|BAE73279.1| DNA gyrase subunit B GyrB [Sodalis glossinidius str. 'morsitans'] Length = 804 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 KIHEDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS-DIFSVQ 185 VVNALS L+L IKREG +++ ++ G+ +PL V G + TGT V F PS + Sbjct: 122 VVNALSEKLELMIKREGKVHQQTYHAGVPQSPLEVVGET-DQTGTTVRFWPSFVTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIRLRDKRNDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGG HL+G R+A+TR + SY++ Sbjct: 239 NVFYFSTEKDGIGVEIALQWNDGFQENIYCFTNNIPQRDGGAHLAGFRAAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNERLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIELGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I ++ ++ L N + + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIALAMDGATLHANAHAPALAGEPLENLVAEHYAVQKMIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + S Q+ S + L LN + + + Sbjct: 599 RRFPRVLLNHLIYQPALTEVQLSKQDQVTSWIASLVQALNDNEKHGSSYSYKVQENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + L++ GV ++L+ I + + + + + +T Sbjct: 659 LFEPLLRVRTHGVDTDYLLDYDFIHGGEYRKLATLGETLGDLIEADAYIERGERRQPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++PD+R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|119773158|ref|YP_925898.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella amazonensis SB2B] gi|119765658|gb|ABL98228.1| DNA gyrase subunit B [Shewanella amazonensis SB2B] Length = 805 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 399/812 (49%), Positives = 546/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSENT----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 IT+T+++DGS +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CSEITITIHVDGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + +G+ D P+ V G A TGTEV F PS + Sbjct: 117 HGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKVVGDAT-KTGTEVRFWPSEE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K Sbjct: 176 TFSDTLFHFDILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVEYLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 234 TPVNKDIFHFAQEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRN 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +KK+K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 294 LNNYMEAEGYNKKNKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E Sbjct: 354 MGEKLGDYLLENPGDAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYDPDKTRYHYIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+ +L ++L +L +S L ++ +++ Sbjct: 534 PLYKVKKGKHEQYLKDDPALTEFLTTGALDGASIHPSQGAPGMSGEPLEKLVNQYREVEG 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652 +I + + ++ + V + + DQ + L + Sbjct: 594 IIARLDLRYPEVLTDRMLYHPVLSNDILADQAKVQAWCDAFVADLVERESSGVLYNAVAE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G+ +++ S + +N ++ + Sbjct: 654 HDPERQVYVPKVTLRRHGIDHEYLFSYDFFQSSDYRKMGALANALDGLIEEGGYVQRGEK 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +T LD + ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA Sbjct: 714 VKPVTSFIEALDWLVGESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 774 ADQLFTCLMGDQVEPRRDFIEANALNVANLDV 805 >gi|229846657|ref|ZP_04466765.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1] gi|229810750|gb|EEP46468.1| DNA gyrase subunit B [Haemophilus influenzae 7P49H1] Length = 806 Score = 944 bits (2441), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 544/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G PL V G+ TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNTE-TTGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLN V I LIDKR + E Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNFGVSIRLIDKR--DGAEDHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKGVLDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLSRHYPAPVLKGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|270158399|ref|ZP_06187056.1| DNA gyrase B subunit [Legionella longbeachae D-4968] gi|289163357|ref|YP_003453495.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella longbeachae NSW150] gi|269990424|gb|EEZ96678.1| DNA gyrase B subunit [Legionella longbeachae D-4968] gi|288856530|emb|CBJ10325.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella longbeachae NSW150] Length = 805 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 412/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+++I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E + NG+ D P+ TG A TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSEELHLTVRRHGKIHEQRYRNGVPDAPMAETGDAT-TTGTQIWFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+RS R+ T Y+GGI+AFV +L+++K Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIKAFVEHLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +M + ++NI ++L+M+WND Y E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 235 NVIMPIVFSMTAEKENIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T++LS+K+PDP+FSSQTK+KLVSSEV+SVVES V Sbjct: 295 NNYIESEGYAKKAKVSPTGDDAREGLTAILSVKVPDPKFSSQTKDKLVSSEVKSVVESSV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P AK IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 AEKFNDFLLENPSSAKAIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG D +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ P LI G++YI +PP Sbjct: 475 LGCGIGPDEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L +YL +L I+ L + + +K+ Sbjct: 535 LYKVKRGKQEQYVKDDEALFEYLTQSALDGAAFFPTKDAPSIASKALEELVLQFRRAEKI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWH---- 654 IK + + +++ + + E +E + +L + L + K+E+ Sbjct: 595 IKRYKRRYPTDILKRIAYLPILHIEDLDQEEKVANWCKQLHSSLQQVGSKTEQYDVDVHM 654 Query: 655 -GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G + + S K ++ + + Sbjct: 655 LPDTNQFLPRIIVTQHGAKNPIPINAEFFNSKDYKELVSLGAKLASLIEEGAYIKRGDKE 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + LD + ++G ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 LAVESFEQALDWLMEEAKRGQTIQRYKGLGEMNPEQLWETTMDPTVRRMLQVNIEDAVAA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +F+ LMGD VEPRREFI+ N+L + +D+ Sbjct: 775 DAIFTTLMGDNVEPRREFIEFNALEAENIDV 805 >gi|148825154|ref|YP_001289907.1| DNA gyrase subunit B [Haemophilus influenzae PittEE] gi|89892398|gb|ABD78983.1| HI0567-like protein [Haemophilus influenzae] gi|148715314|gb|ABQ97524.1| DNA gyrase subunit B [Haemophilus influenzae PittEE] Length = 806 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 404/810 (49%), Positives = 545/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G PL V G+ TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQAPLTVIGNTE-TTGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR + E Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKR--DGAEDHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKGVLDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLSRHYPAPVLKGLIYQSPISVEMMKDESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRTFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|238783051|ref|ZP_04627078.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970] gi|238716052|gb|EEQ08037.1| DNA gyrase subunit B [Yersinia bercovieri ATCC 43970] Length = 804 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS + F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DLTGTTVRFWPSFETFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL ++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIKAFVEYLSKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y ++ +L ++ L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMSLALDGAALHINAHAPALAGEPLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + E ++E+ L LN + + Sbjct: 599 RRFPRALLNNLIYQPTLLEEDLSNKEVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEDAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|84394122|ref|ZP_00992856.1| DNA gyrase subunit B [Vibrio splendidus 12B01] gi|84375268|gb|EAP92181.1| DNA gyrase subunit B [Vibrio splendidus 12B01] Length = 805 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 415/812 (51%), Positives = 549/812 (67%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +VSD+GRGIPT+LH EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CNDIIVTIHEDSSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + L I R G I+ ++ +G PL V G + TGTE+ F PS + Sbjct: 116 HGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVGDT-DKTGTEIRFWPSEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I LIDKR E + Y+GGI+AFV +L+ +K Sbjct: 175 TFNNIEFHYDILAKRLRELSFLNSGVSIKLIDKR-EEDKMDHFEYEGGIQAFVEHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P++Q R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGG HL+G R ALTR Sbjct: 234 TPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGAHLAGFRGALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTSTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEST 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAKI+ K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPGEAKIVCSKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDE+++ Y ++ +L + L + K Sbjct: 534 PLYKVKKGKQEQYIKDEDAMNQYQVSLALDNAELHVNPEAPAFTGEGLEKLVHQYNAGIK 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS-----EKS 652 L+ + + I + + E D+ + +L +LN + E Sbjct: 594 LVDRMSRRYPRALIHELIYVPRLTAEQCHDEAAVEAWGKQLVEQLNGKEAGASQYSLEVE 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + S + GV + VL I S S ++ + Sbjct: 654 KHEELGLSVPKIVVRTHGVTHEHVLSIDLINSKEFGKLADLSEALDGLIEEGAYIKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L+ + R+G+S+QRYKGLGEMN QLWETT++P+TR +++V I DA Sbjct: 714 TQAVSSFVEALNWLVKESRRGLSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVG 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+EN+L LD+ Sbjct: 774 ADLLFTTLMGDQVEPRRNFIEENALKVANLDV 805 >gi|238750286|ref|ZP_04611788.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380] gi|238711519|gb|EEQ03735.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380] Length = 804 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 401/806 (49%), Positives = 546/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLRDKRNDKE--DHFHYEGGIKAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + +S L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINEHAPALSGEPLERLVTEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E ++E+ L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLQEEELSNKEVVTQWIESLVALLNEKEQHGSSYSAVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ +T Sbjct: 659 LFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVTS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+ R +LRV + DA AD LF+ Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|253987487|ref|YP_003038843.1| DNA gyrase subunit B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778937|emb|CAQ82097.1| DNA gyrase subunit B [Photorhabdus asymbiotica] Length = 805 Score = 944 bits (2440), Expect = 0.0, Method: Composition-based stats. Identities = 397/808 (49%), Positives = 552/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ + + Sbjct: 1 MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCNEV 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IVTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALS L+L I+R+G ++E ++ G+ +PL + G TGT V F PS D F + Sbjct: 121 VSVVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKIVGETE-QTGTRVRFWPSMDTFRN 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F +D L RLRELSFLNS V I LIDKR+ Y+GGI+AFV +L+++K P+ Sbjct: 180 NTEFQHDILAKRLRELSFLNSGVSIRLIDKRTNTE--DHFHYEGGIKAFVEFLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY Sbjct: 238 HPNVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ Sbjct: 298 MDKEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LVEYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E++++Y ++ +L D + L + + + K+IK Sbjct: 538 VKKGKQEQYIKDDEAMDEYQLSIALDGASLYTSDHTPALRGEPLEKLVTEFNGVKKIIKR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEK-----SEKSWHGS 656 + + + + E +D+ L RLN + + + Sbjct: 598 MERLYPASLLNNLIYHPKLTEEALTDETKVQEWIETLVTRLNDREQNGSSYSYQLHENRE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +++ GV + L+ + + +++ + + + Sbjct: 658 RQMFEPILRVRTHGVDTDYPLDFDFVHGGEYHRITLLGDKLSNLIEENAYIERGERRQPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + L+ + R+G+S+QRYKGLGEMN QLWETT+NP+TR ++RV + DA D L Sbjct: 718 SDFEQALEWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAANIDI 805 >gi|238754008|ref|ZP_04615367.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473] gi|238707760|gb|EEQ00119.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473] Length = 804 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 400/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL + G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMVGET-DQTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y ++ +L +S L + + + K IK Sbjct: 539 KGKQEQYIKDDDAMEQYQMSLALDGAALHINPEAPALSGERLEALVAEHYSVQKTIKRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + + + ++E+ L LN + S + Sbjct: 599 RRYPRALLNNLIYQPTLLEDDLGNKEVVQQWIDSLVTLLNEKEQHGSSYSSIVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + ++ + ++ + Sbjct: 659 MFEPILRIRTHGVDTDYDLDFDFIHGGEYRKICLLGEKLRGLIEEGAFVERGERRLAVDS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|46143431|ref|ZP_00135256.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|165976237|ref|YP_001651830.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150147|ref|YP_001968672.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251321|ref|ZP_07337499.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252819|ref|ZP_07338978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245683|ref|ZP_07527769.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247805|ref|ZP_07529841.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250051|ref|ZP_07532015.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252443|ref|ZP_07534339.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254650|ref|ZP_07536479.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256870|ref|ZP_07538648.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259097|ref|ZP_07540827.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261303|ref|ZP_07542978.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263484|ref|ZP_07545099.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876338|gb|ABY69386.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915278|gb|ACE61530.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648249|gb|EFL78446.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649863|gb|EFL80041.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853385|gb|EFM85604.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855607|gb|EFM87774.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857911|gb|EFM90003.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860035|gb|EFM92052.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862395|gb|EFM94360.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864604|gb|EFM96509.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866764|gb|EFM98622.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869034|gb|EFN00836.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871127|gb|EFN02856.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 810 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 414/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +T++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CKDIIITIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL V G + TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSLD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I LID+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ LS +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L + I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEGAPALSGVALESLISQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650 KL + + + + S + E Q + + +L +SE Sbjct: 598 QKLFDRLSRRYPVALLNELIYSPALSAEFAKVQAKVTAWNEQFVAKLMEKETGGSFYRSE 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I S N + + ++ Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNELNDLLSPSAYVMRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + +++ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810 >gi|319775512|ref|YP_004138000.1| DNA gyrase subunit B [Haemophilus influenzae F3047] gi|319897917|ref|YP_004136114.1| DNA gyrase, subunit b [Haemophilus influenzae F3031] gi|329122446|ref|ZP_08251033.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus aegyptius ATCC 11116] gi|317433423|emb|CBY81804.1| DNA gyrase, subunit B [Haemophilus influenzae F3031] gi|317450103|emb|CBY86317.1| DNA gyrase, subunit B [Haemophilus influenzae F3047] gi|327473728|gb|EGF19147.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Haemophilus aegyptius ATCC 11116] Length = 806 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|145638524|ref|ZP_01794133.1| DNA gyrase subunit B [Haemophilus influenzae PittII] gi|145272119|gb|EDK12027.1| DNA gyrase subunit B [Haemophilus influenzae PittII] gi|309750028|gb|ADO80012.1| DNA gyrase subunit B [Haemophilus influenzae R2866] Length = 806 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DYFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|283480416|emb|CAY76332.1| DNA gyrase subunit B [Erwinia pyrifoliae DSM 12163] Length = 803 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 548/806 (67%), Gaps = 10/806 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I Sbjct: 1 MMSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 LVTIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG +++ +++G+ L VTG + TGT V F PS F+ Sbjct: 121 VSVVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTN 179 Query: 185 Q-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 180 VVEFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y Sbjct: 238 HPNVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNEL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS +L EHP +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LSEYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG Sbjct: 418 LSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY Sbjct: 478 GIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E+++ Y I +L S + L + + + K+IK Sbjct: 538 VKKGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + + + + L LN + + ++ Sbjct: 598 MERRYPVALLNALIYHATLSDVTAEAPVQNWLDGLVKYLNDNDQHGSSYSGVVRENRELH 657 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ + + ++ + + I Sbjct: 658 LFEPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIAS 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ Sbjct: 718 FEQAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFT 777 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 778 TLMGDAVEPRRAFIEENALRAANIDI 803 >gi|332139414|ref|YP_004425152.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype'] gi|327549436|gb|AEA96154.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype'] Length = 806 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 414/812 (50%), Positives = 551/812 (67%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MS---AENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +VSD+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEIVVQIHSDGSVSVSDDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS LKLRI+R G +E + +G+ PL VTG + TGT + F PSSD Sbjct: 118 HGVGVSVVNALSSRLKLRIRRGGKAHEQEYQHGVPQAPLAVTGDT-DKTGTMIRFWPSSD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ ++YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL++ K Sbjct: 177 TFTDTLYHYDILAKRLRELSFLNSGVSIRLKDERDGKE--DHFMYEGGIKAFVEYLNQKK 234 Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + Q D I++++AM+WND + ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TAVHQKVFHFSSEQEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 295 LNNYMEKEGLNKKAKTNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVRPAVESA 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ +L E+P E+KII K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 355 MNEKLAEFLLENPAESKIIAGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +P Sbjct: 475 ALGCGIGRDEYDPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+++L +YL ++ D IS L N + ++K Sbjct: 535 PLYKVKKGKQEQYLKDDDALTNYLTGIAIDGASLHTSDEDPGISGVGLENLVKQYQSVEK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNFIAE-KSEKS 652 +I + + + + N E + + +L R N A + E Sbjct: 595 MIARMKRKMPSAILYRMLYTPTLNLEDLKDESALEHVAKHFVEQLTERENDGATYRYEIR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ I + G+ +++++ I S + + + I + + Sbjct: 655 TDAELSEYYITIIMRMHGIDYEYIIDHEFIESSEYQRLKELNLAINDMMSVDAYIKRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + LD + + ++G +QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 715 KQPVESFKEALDWLMNEAKRGQYIQRYKGLGEMNPEQLWETTMDPEGRRMLQVTIEDAIG 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 775 CDQLFTTLMGDQVEPRREFIEANALKVENLDV 806 >gi|317494670|ref|ZP_07953082.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917272|gb|EFV38619.1| DNA gyrase, subunit B [Enterobacteriaceae bacterium 9_2_54FAA] Length = 804 Score = 944 bits (2439), Expect = 0.0, Method: Composition-based stats. Identities = 410/805 (50%), Positives = 552/805 (68%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT LH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ +G+ PL V G TGT V F PS + F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYAHGVPQFPLKVVGDTE-TTGTTVRFWPSMETFSNHT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLRDKR--DNREDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + SY+E Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L+E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLQENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPAHS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+++++ Y ++ +L +S L + + ++ KLI Sbjct: 539 KGKQEQYIKDDDAMDQYQLSIALDGAELHINADAPAMSNEHLEKLVTEHYQVQKLIGRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEKSWHGSIN 658 + K + Q + DQ L N LN + + + Sbjct: 599 RRYPKALLNQLIYHPTLVEADLSDQAKVQQWIESLVNTLNEKEVHGSTYSAIVTENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ I + + + ++ + IT Sbjct: 659 MFEPSLRIRTHGVDTDYPLDFDFIHGAEYRRICNLGGTLRDMIEDGAFVMRGERRQPITS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEQALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPQSRRMLRVTVKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALD 802 LMGD VEPRR FI+EN+L + LD Sbjct: 779 TLMGDAVEPRRAFIEENALRAANLD 803 >gi|145637927|ref|ZP_01793569.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] gi|145268867|gb|EDK08828.1| DNA gyrase subunit B [Haemophilus influenzae PittHH] Length = 806 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 543/810 (67%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSENH--FHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQVVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|68249167|ref|YP_248279.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP] gi|229845696|ref|ZP_04465819.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] gi|68057366|gb|AAX87619.1| DNA gyrase subunit B [Haemophilus influenzae 86-028NP] gi|229811382|gb|EEP47088.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1] Length = 806 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ + Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVTRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|145633477|ref|ZP_01789206.1| DNA gyrase subunit B [Haemophilus influenzae 3655] gi|144985846|gb|EDJ92454.1| DNA gyrase subunit B [Haemophilus influenzae 3655] Length = 806 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DYFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ + Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVTRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|309972282|gb|ADO95483.1| DNA gyrase subunit B [Haemophilus influenzae R2846] Length = 806 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPTPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|238765067|ref|ZP_04626002.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638] gi|238696684|gb|EEP89466.1| DNA gyrase subunit B [Yersinia kristensenii ATCC 33638] Length = 804 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 543/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+REG ++E ++ G+ PL V G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVGET-DQTGTTVRFWPSFQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ RE Y+GGI AFV YL ++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYLSKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+ Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMG 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + L + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINADAPPLVGEHLEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E D+E+ L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLQEEDLTDKEVVTQWIDSLVVMLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ I + + +++ + ++ ++ Sbjct: 659 LFEPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIDDGAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEEALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|260582729|ref|ZP_05850516.1| DNA gyrase, B subunit [Haemophilus influenzae NT127] gi|260094179|gb|EEW78080.1| DNA gyrase, B subunit [Haemophilus influenzae NT127] Length = 806 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGAASIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISANAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E + + +L ++ + + Sbjct: 597 IGRLNRHYPVPVLQGLIYQSPISVEMMKNESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|292490133|ref|YP_003533028.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430] gi|292901137|ref|YP_003540506.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946] gi|291200985|emb|CBJ48124.1| DNA gyrase subunit B [Erwinia amylovora ATCC 49946] gi|291555575|emb|CBA24167.1| DNA gyrase subunit B [Erwinia amylovora CFBP1430] gi|312174326|emb|CBX82579.1| DNA gyrase subunit B [Erwinia amylovora ATCC BAA-2158] Length = 802 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 407/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VVNALS L+L I+REG +++ +++G+ L VTG + TGT V F PS F+ Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S + L + + + K+IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNS 660 + + + + + Q + L LN + + ++ Sbjct: 599 RRYPMALLNALIYHATLSDLTAQAPVNTWLDGLVTYLNENDQHGSSYNGVVRENRELHLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ I + ++ + + I Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFILGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802 >gi|227113113|ref|ZP_03826769.1| DNA gyrase subunit B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 805 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 547/806 (67%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L L I R+G ++E ++ +G+ PL VTG N TGT V F PS + F+ Sbjct: 122 VVNALSEKLTLVIHRDGKLHEQTYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I LID+R + + Y GGI+AFV YL+R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++ G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + K+I Sbjct: 540 KGKQEQYIKDDEAMDQYQIALALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKMIGRME 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + F+ + + ++E + A L + LN + Sbjct: 600 RRFPRVFLNRLIYQPTLAEADLGEREKVQAWAESLVSSLNENEIHGSTYSFVIHHDEERS 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L + + ++ + + + Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGSEYRKLNQLGEKLRGLIEEDAYIERGERRQPVAS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD+LF+ Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805 >gi|238898809|ref|YP_002924491.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466569|gb|ACQ68343.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 804 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 551/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDESL GY ITV Sbjct: 2 SNTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLAGYCKKITV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 IIHEDNSVSVEDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS-SDIFSVQ 185 VVNALS L+L I REG+I++ +++ G PL V G TGT V F PS + Sbjct: 122 VVNALSEKLELTISREGSIHQQTYVMGEPQAPLKVMGKTE-LTGTRVRFWPSLKTFTNQT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ + Y+GGI+AFV+YL+++K P+ Sbjct: 181 EFQYDILAKRLRELSFLNSGVFICLEDKRNDQE--KHFHYEGGIQAFVTYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+E Sbjct: 239 KVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRAAMTRTMNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGFSKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKTIVNKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+S+E+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASEEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDAD+DG+HIRTLLLTFF+RQMP LI G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADIDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y ++ +L +S L + + K + Sbjct: 539 KGKQEQYIKDDDAMEKYQMSLALEGVKFHTHPQAPALSGASLEKLVHQHYSVQKTLNRME 598 Query: 606 PNHDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + Q + D E + + L ++LN + + + Sbjct: 599 RRYPRALLNQMIYQPTLQEGDLKDSEKLQAWMTLLVDKLNEKETQGSHYIFVLNKNTENE 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 D ++K GV ++L+ I S + + +++ + L K I Sbjct: 659 IYDPVLKIRTHGVDTDYLLDLHFIQSSEYQKICHWGDQLRDLLEPGAFLQRGEKKTCINS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P+TR +L+V+I DA AD LF+ Sbjct: 719 FEEALDWLMKESRRGLAIQRYKGLGEMNPGQLWETTMDPETRRMLQVRIKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRNFIEENALKAANIDI 804 >gi|15963765|ref|NP_384118.1| DNA gyrase subunit B [Sinorhizobium meliloti 1021] gi|307302568|ref|ZP_07582325.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C] gi|307316101|ref|ZP_07595545.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83] gi|15072940|emb|CAC41399.1| Probable DNA gyrase subunit B [Sinorhizobium meliloti 1021] gi|306897941|gb|EFN28683.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83] gi|306903238|gb|EFN33828.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C] Length = 811 Score = 943 bits (2438), Expect = 0.0, Method: Composition-based stats. Identities = 525/812 (64%), Positives = 644/812 (79%), Gaps = 10/812 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTDISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ADI+TVTLN DGS TV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADIVTVTLNPDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS LKL+I+R G I+EMSF +G+ D PL VTG AG +TGTEVTF Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRAGKIHEMSFTHGVADGPLKVTGDAGGETGTEVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS FS +F + TL+HRLREL+FLNS V+I L DKR + R M Y GG+EAFV+Y Sbjct: 181 TPSEQTFSNIEFEFGTLEHRLRELAFLNSGVRIVLTDKRHSDIRREEMMYDGGLEAFVAY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+Q P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A Sbjct: 241 LDRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQITSY + S +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ LS WLEEHP +AKI+V KV++A+ R+AAR+AR+LTRRKG LDI+SLPGKLA Sbjct: 361 VESLVNEALSVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + RGKS+QY+KDE++LEDYLI+ L E S V DLR I+DAL Sbjct: 541 IAQPPLYKVARGKSVQYLKDEKALEDYLISMGLEEASLELA-SGEVRVGQDLREVINDAL 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEKSW 653 ++ L++ + ++++ +EQA I+G N E + E + +A+++A RL+ IAE++E+ W Sbjct: 600 RLRSLMEGLHSRYNRSVVEQAAIAGALNVELNGERDEYQLIAAEVARRLDVIAEETERGW 659 Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ + ++R+ RGV+E VL+ + I S +++ R++E Y L Sbjct: 660 EAAVTAEGGLKLERMVRGVKEAAVLDMALIGSSDARHIDQLKARLKEVYGAPPVLRRRDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+TDA+ Sbjct: 720 TQEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFSRLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811 >gi|259910292|ref|YP_002650648.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96] gi|224965914|emb|CAX57447.1| DNA gyrase subunit B [Erwinia pyrifoliae Ep1/96] gi|310765871|gb|ADP10821.1| DNA gyrase subunit B [Erwinia sp. Ejp617] Length = 802 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 405/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VVNALS L+L I+REG +++ +++G+ L VTG + TGT V F PS F+ Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKN--DHYHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NVFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L S + L + + + K+IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANASAPALGGKPLEDLVSEFNSTRKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660 + + + + + + + L LN + + ++ Sbjct: 599 RRYPVALLNALIYHATLSDVTAEAPVQNWLDGLVKYLNDNDQHGSSYSGVVRENRELHLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ + + ++ + + I Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +D + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIDWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802 >gi|307942709|ref|ZP_07658054.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4] gi|307773505|gb|EFO32721.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4] Length = 817 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 481/805 (59%), Positives = 606/805 (75%), Gaps = 5/805 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D Q + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+AD Sbjct: 14 DPNQGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 73 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +TV LN DGS TV+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 74 HVTVCLNADGSVTVADNGRGIPTDVHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L+LRI R + M F +G PL V G A GT+VTFLPS + F Sbjct: 134 VGVSVVNALSTKLELRIWRNDQEHHMEFAHGEAVAPLKVVGPANGQKGTQVTFLPSPETF 193 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +F++ TL+HRLREL+FLNS V+I L DKR E R ++Y+GG+EAFV YLDR K P Sbjct: 194 TKTEFDFGTLEHRLRELAFLNSGVRIILTDKRGVEERAEELYYEGGLEAFVRYLDRAKHP 253 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L+++PI I +D I+++ AM WND YHE VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Sbjct: 254 LIETPITISTEKDGITVEAAMWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRAALTRQVTG 313 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E + KK+K SV GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES ++ Sbjct: 314 YAESTGLLKKEKVSVTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESQMSQ 373 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS W EE+P AK +V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERD Sbjct: 374 ALSEWFEENPAPAKAVVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDA 433 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG Sbjct: 434 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 493 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG++ F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP L+ NG++YI +PPLY Sbjct: 494 TGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELVENGYIYIAQPPLY 553 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TRGKS QY+KD+ +LE+YLI+ + + + V + DLR I+ A + + Sbjct: 554 KVTRGKSEQYLKDQAALENYLISGGVEDASL-TLANGEVRTSEDLRQVIETAQSLTNIFD 612 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSI-NN 659 + + + +EQA I+G N + ++ A+ +A RL+ +A++ E+ W G + Sbjct: 613 GLHSRYSRDVVEQAAIAGALNPDILEDRTKATEAAAYVARRLDILADEFERGWEGEAQED 672 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ KR RGV+E +++ + + S ++ + ++E Y L +I GP Sbjct: 673 GSLVFKRTVRGVEEAAIIDPALLSSADARRLDSQATHLQEIYGKAAVLRRRDTSTEIRGP 732 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +LL IF+ G+KGISMQRYKGLGEMN QLWETTL+P+ RSLL+VK+ +A ADD+F++ Sbjct: 733 RALLQQIFAFGQKGISMQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 792 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGDEV+PRREFIQ+N+L LDI Sbjct: 793 LMGDEVDPRREFIQDNALNVANLDI 817 >gi|227823871|ref|YP_002827844.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234] gi|227342873|gb|ACP27091.1| DNA gyrase, subunit B [Sinorhizobium fredii NGR234] Length = 811 Score = 943 bits (2437), Expect = 0.0, Method: Composition-based stats. Identities = 523/812 (64%), Positives = 646/812 (79%), Gaps = 10/812 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTDISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ADI+TVTLN DGSCTV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADIVTVTLNPDGSCTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS LKL+I+R G ++EMSF +G+ D PL VTG AG++TGTEVTF Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRAGKVHEMSFTHGVADGPLTVTGDAGSETGTEVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS FS +F++ TL+HRLREL+FLNS V+I L DKR + R M Y GG+EAFV+Y Sbjct: 181 LPSEQTFSKTEFDFATLEHRLRELAFLNSGVRIVLTDKRHSDIRRDEMMYDGGLEAFVAY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+ P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A Sbjct: 241 LDRAKKPLVHKPVSIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQITSY + S +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITSYADTSGITKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ L+ WLEE+P +AKI+V KV++A+ R+AAR+AR+LTRRKG LDI+SLPGKLA Sbjct: 361 VESLVNEALNVWLEENPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +TRGKS QY+KDE++LEDYLI L E S V + D R I+DAL Sbjct: 541 IAQPPLYKVTRGKSAQYLKDEKALEDYLITMGLEEASL-TLGSGEVRAGQDFREVINDAL 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ L+ + +++ +EQA I+G N E S Q+ +A+++A RL+ IAE++E+ W Sbjct: 600 RLRSLMDGLHSRYNRAIVEQAAIAGALNTELNSHQDDYQKVAAEVARRLDVIAEETERGW 659 Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 GS+ + ++R+ RGV+E VL+ + I S +++ + +++E Y L Sbjct: 660 VGSVTAEGGLKLERMVRGVKEVAVLDMALIGSSDARHIDQLTAKLKEVYAAPPVLRRRDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK++DA+ Sbjct: 720 THEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVSDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFSRLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811 >gi|37524036|ref|NP_927380.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783459|emb|CAE12299.1| DNA gyrase subunit B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 804 Score = 942 bits (2436), Expect = 0.0, Method: Composition-based stats. Identities = 397/806 (49%), Positives = 548/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ + V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSEVIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E ++ G+ +PL V G TGT V F PS D F Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYHLGVPQSPLKVVGETE-QTGTRVRFWPSMDTFRDNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F +D L RLRELSFLNS V I LIDKR+ E Y+GGI+AFV +L+++K P+ Sbjct: 181 EFQHDILAKRLRELSFLNSGVSIRLIDKRT--NIEDHFHYEGGIKAFVEFLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYNKKSKVSATGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKTVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E++++Y ++ +L + + L + + + K+IK Sbjct: 539 KGKQEQYIKDDEAMDEYQLSIALDGASLYTNEHVPALRGEPLEKLVTEFNGVQKIIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEK-----SEKSWHGSIN 658 + + + + E+ + L RLN + + Sbjct: 599 RLYPLSLLNSLIYHPNLTEETLSDKAKVEEWIEMLVTRLNDSEQNGSSYSYRLHENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV ++L+ + + +++ + + ++ Sbjct: 659 MYEPVLCVRTHGVDTDYLLDFDFVHGGEYHRITLLGDKLRNLIEEDAYIERGERRQPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT+NP+TR ++RV + DA D LF+ Sbjct: 719 FEQALNWLTKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|118590457|ref|ZP_01547859.1| DNA gyrase subunit B [Stappia aggregata IAM 12614] gi|118436920|gb|EAV43559.1| DNA gyrase subunit B [Stappia aggregata IAM 12614] Length = 817 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 488/805 (60%), Positives = 608/805 (75%), Gaps = 5/805 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+AD Sbjct: 14 ETNGGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 73 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +TVTLN DGS TVSDNGRGIPTDLH EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 74 HVTVTLNPDGSVTVSDNGRGIPTDLHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L+LRI R G + M+F +G PL V G A GTEVTFLPS D F Sbjct: 134 VGVSVVNALSTKLELRIWRNGQEHSMTFAHGDAVAPLKVVGPANGRKGTEVTFLPSPDTF 193 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +F++ TL+HRLREL+FLNS V+I L DKR E R +FY+GG+EAFV YLDR K P Sbjct: 194 TKTEFDFSTLEHRLRELAFLNSGVRIILTDKRGVEDRVEELFYEGGLEAFVRYLDRAKHP 253 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L+++PI ++ RD I+++ AM WND YHE+VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Sbjct: 254 LIEAPINMRAERDGITVEAAMWWNDSYHEHVLCFTNNIPQRDGGTHLAGFRAALTRQVTG 313 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E + KK+K ++ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ ++ Sbjct: 314 YAESTGLMKKEKVNLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLISQ 373 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEE+P AK IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERD Sbjct: 374 ILSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDA 433 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG Sbjct: 434 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 493 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG++ F++ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI NG++YI +PPLY Sbjct: 494 TGIGKEEFNVEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPQLIENGYIYIAQPPLY 553 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + RG+S QY+KD+++LEDYLI Q L E + V + DLR + A I + Sbjct: 554 KVKRGQSEQYLKDQKALEDYLIGQGLDEASL-TLANGEVRTGQDLRAVAETARTISDIFD 612 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGS-INN 659 + +++ +EQA I+G E + A+ +A R++ +A++ E+ W G ++ Sbjct: 613 GLHSRYNRDVVEQAAIAGALTPEILDDQGKAEEAATYIARRMDILADEFERGWVGEARDD 672 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ KR RGVQE ++ + + S ++ + + E Y L +I GP Sbjct: 673 GSLVFKRTVRGVQEVATIDAALLGSSDARRLAAHAGHLNEIYGKAAVLRRKDISTEIRGP 732 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +LL I++ G+KGIS+QRYKGLGEMN QLWETTL+P+ RSLL+VK+ +A ADD+F++ Sbjct: 733 RALLTQIYAAGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 792 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGDEVEPRREFIQEN+L LDI Sbjct: 793 LMGDEVEPRREFIQENALAVANLDI 817 >gi|150398412|ref|YP_001328879.1| DNA gyrase subunit B [Sinorhizobium medicae WSM419] gi|150029927|gb|ABR62044.1| DNA gyrase, B subunit [Sinorhizobium medicae WSM419] Length = 811 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 519/812 (63%), Positives = 642/812 (79%), Gaps = 10/812 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTEISETEAGAIAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV+DNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNPDGSVTVTDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS LKL+I+R G I+EMSF +G+ D PL VTG AG+DTGTEVTF Sbjct: 121 VSGGLHGVGVSVVNALSVSLKLKIRRSGKIHEMSFTHGVADGPLKVTGDAGSDTGTEVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS FS +F + L+HRLREL+FLNS V+I L DKR + R + Y GG+EAFV+Y Sbjct: 181 TPSEQTFSNIEFEFARLEHRLRELAFLNSGVRIVLTDKRHSDIRREELMYDGGLEAFVAY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+Q P+ I+G +D I++++AM WND YHEN+LCFTNNIPQ+DGGTH++G R+A Sbjct: 241 LDRAKKPLVQKPVSIRGEKDGITVEVAMWWNDSYHENMLCFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQITSY + S +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITSYADSSGVTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ L WLEEHP +AKI+V KV++A+ R+AAR+AR+LTRRKG LDI+SLPGKLA Sbjct: 361 VESLVNEALGVWLEEHPSDAKILVGKVVEAAAAREAARKARELTRRKGALDISSLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSELFLVEGDSAGGSAKQGRSRE+QAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRESQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGPDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + RGKS+QY+KDE++LEDYLIN L E S V + DLR I+DAL Sbjct: 541 IAQPPLYKVARGKSVQYLKDEKALEDYLINMGLEEASLELA-SGEVRAGQDLREVINDAL 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSW 653 ++ L+ + ++++ +EQA I+G N E + + N +A+++A RL+ IAE++E+ W Sbjct: 600 RLRSLMDGLHSRYNRSVVEQAAIAGALNVELNGQRNEYQQIAAEVARRLDVIAEETERGW 659 Query: 654 HGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + + ++R+ RGV+E VL+ + I S +++ +R++E Y L Sbjct: 660 AAEVTAEGGLKLERMVRGVKEAAVLDMALIGSSDARHIDQLKSRLKEVYGAPPMLRRRDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +I+GP +LLD IF+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ Sbjct: 720 TQEISGPRALLDAIFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFSRLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811 >gi|126208297|ref|YP_001053522.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae L20] gi|126097089|gb|ABN73917.1| DNA gyrase subunit B [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 810 Score = 942 bits (2435), Expect = 0.0, Method: Composition-based stats. Identities = 414/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +T++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CKDIIITIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL V G + TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTVIGDT-DKTGTMVRFWPSLD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I LID+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ LS +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALSEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L + I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEGAPALSGVALESLISQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650 KL + + + + S + E Q + + +L +SE Sbjct: 598 QKLFDRLSRCYPVALLNELIYSPALSAEFAKVQAKVTAWNEQFVAKLMEKETGGSFYRSE 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I S N + + ++ Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNELNDLLSPSAYVMRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + +++ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810 >gi|323137236|ref|ZP_08072315.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242] gi|322397594|gb|EFY00117.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242] Length = 810 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 472/812 (58%), Positives = 610/812 (75%), Gaps = 11/812 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+N +N + Y A+SI++L+GLDAV+KRP MYIGDTD +GLHHM+YEV+DNAIDE+L Sbjct: 1 MSENEKNVDPAEYGAESIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A +TVTLN DGSC+V+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHATRVTVTLNADGSCSVTDNGRGIPTDIHPEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGTE 172 GGLHGVGVSVVNALS WLKLRI R G + M F NG L + G A GTE Sbjct: 121 GGLHGVGVSVVNALSVWLKLRIWRNGKEHAMEFANGDAVTKLAIVGDAPIEDGKPKRGTE 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 VTFLPS+ F++ +F+Y T++HRLREL+FLNS V+I L D R E + +FY+GG+EAF Sbjct: 181 VTFLPSTATFTMVEFDYATIEHRLRELAFLNSGVRIVLTDARHAEVKREELFYEGGLEAF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +LDR K PL+ +PI + G RD+IS+++A+ WND YHENVL FTNNIPQ+DGGTHL+G Sbjct: 241 VRWLDRAKSPLISAPILVNGKRDHISVEVALWWNDSYHENVLAFTNNIPQRDGGTHLAGF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALTRQIT Y + S +K++K + GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RAALTRQITGYADSSGLTKREKVDLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VE+ +N+ L WLEEHP EAK IV KV++A+ R+AAR+AR+LTRRKG LD+A+LPG Sbjct: 361 RPAVENVMNEILGQWLEEHPAEAKNIVSKVVEAAAAREAARKARELTRRKGALDVANLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP KSELF+VEGDSAGG+AKQGR R QA+LPLRGKILNVERARFDKMLSS+ Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGTAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSE 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 +IGTLITALGTG+G+D F+ +KLRYHKIIIMTDADVDGAHIRTL+LTFF+RQMP LI G Sbjct: 481 QIGTLITALGTGVGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPELIERG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 ++I + PLY +T+GKS QY+KDE +LEDYLI+ L + + DLR ++ Sbjct: 541 HVFIAQAPLYKVTKGKSTQYLKDERALEDYLIDSLLDGAVLR--TGSEDRAGADLRKVLE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 DA ++ + +D+ +EQA ++G + LA ++A RL+ IAE++E+ Sbjct: 599 DARAFRTVMASLHSRYDRHVVEQAAMAGALAPHGENGEADRLAQEVARRLDAIAEETERG 658 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 W G + KR RGV + +L+ + + S ++ + + + + +LI GD Sbjct: 659 WTGEPREGGYVFKRTLRGVTQAVILDAAMLNSSEARKLHERAESLRDVFSAPATLIRRGD 718 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++GP +L + + IGRKG+++QRYKGLGEMNA QLWETTL+ + RSLL+VK+ +A++ Sbjct: 719 EAPLSGPIALYEAMNQIGRKGLTIQRYKGLGEMNAEQLWETTLDREARSLLQVKVKEAAE 778 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ADD+F +LMGD VEPRREFIQEN+L LD+ Sbjct: 779 ADDIFVKLMGDVVEPRREFIQENALSVANLDV 810 >gi|261819374|ref|YP_003257480.1| DNA gyrase subunit B [Pectobacterium wasabiae WPP163] gi|261603387|gb|ACX85873.1| DNA gyrase, B subunit [Pectobacterium wasabiae WPP163] Length = 805 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 544/806 (67%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS LKL I R+G ++E + +G+ PL VTG N TGT V F PS + F+ Sbjct: 122 VVNALSEKLKLVIHRDGKLHEQIYKHGVAQAPLAVTGET-NRTGTTVRFWPSHETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I LID+R + + Y GGI+AFV YL+R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDER-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLMNEKLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++ G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + F+ + + E + A L + LN Sbjct: 600 RRFPRAFLNRLIYQPTLLEADLSERENVQAWAESLVSGLNANEVHGSTYSFVIHHDEERG 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L + + ++ + + + Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGGEYRKLNQLGEKLRGLIEENAYIERGERRQPVAS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT++P +R +LRV + DA AD+LF+ Sbjct: 720 FEQALEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805 >gi|33152675|ref|NP_874028.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP] gi|33148899|gb|AAP96417.1| DNA gyrase subunit B [Haemophilus ducreyi 35000HP] Length = 810 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 409/813 (50%), Positives = 552/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CQDIIVTIHSDNSISVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL + G+ + TGT V F PS Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLTIIGNT-DKTGTSVRFWPSLA 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I LID+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDEREGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLATEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVVKKVDANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L+ +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGAGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMLQYEIDIALEGAGLYVSEGAPALSGLALEKLISQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFI-----AEKSE 650 KL + + T + + + S + E ++ + +L N LN + + Sbjct: 598 QKLFERLVRRYPMTILNELIYSTALSVELAKQQLKITAWTEQLVNTLNTKEVNGSSYQVS 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + ++ + I S ++ + ++ Sbjct: 658 VYFNSERQIYEPQIVVTTHGMDTTYRIDFNFITSNEYGLIVKLGEQLNDLLADSAYVVRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + ++ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V I+DA Sbjct: 718 ERRQAVSTFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNISDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYANLDI 810 >gi|188535559|ref|YP_001909356.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99] gi|188030601|emb|CAO98496.1| DNA gyrase subunit B [Erwinia tasmaniensis Et1/99] Length = 802 Score = 942 bits (2434), Expect = 0.0, Method: Composition-based stats. Identities = 406/804 (50%), Positives = 547/804 (68%), Gaps = 10/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VVNALS L+L I+REG +++ +++G+ L VTG + TGT V F PS F+ Sbjct: 122 VVNALSEKLELTIRREGKVHQQVYVHGVPQAALNVTGET-DLTGTRVRFWPSHQTFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIKLEDKRDGKT--DHYHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NAFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLEHPGDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L DS + L + + + K+IK Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHANDSAPALGGKPLEDLVSEFNSTRKMIKRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-----KSWHGSINNS 660 + + + S Q + L LN + + ++ Sbjct: 599 RRYPMALLNALIYHATLGDVSAQAPVQNWLDGLVTYLNDNDQHGSSYSGMVRENRELHLF 658 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ + + ++ + + I Sbjct: 659 EPVLRVRTHGVDTDYPLDNEFVLGGEYRKICALGEQLRGLIEEDAYIERGERRQPIASFE 718 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 ++ + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV I DA AD LF+ L Sbjct: 719 QAIEWLGKESRRGLSVQRYKGLGEMNPEQLWETTMDPDSRRMLRVTIKDAVAADQLFTTL 778 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 779 MGDAVEPRRAFIEENALRAANIDI 802 >gi|90413729|ref|ZP_01221717.1| DNA gyrase subunit B [Photobacterium profundum 3TCK] gi|90325198|gb|EAS41695.1| DNA gyrase subunit B [Photobacterium profundum 3TCK] Length = 805 Score = 941 bits (2433), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 551/806 (68%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPTD+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS ++L I R G+I+ + +G+ D PL G + TGT + F PS D F+ Sbjct: 122 VVNALSEKVELTIYRHGSIHHQIYHHGVPDKPLEAIGET-DKTGTRIRFWPSEDTFTNVV 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L RLRELSFLNS V I LID+R E ++ Y+GGI+AFV +L+R+K P+ Sbjct: 181 FHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIKAFVEHLNRNKTPIHSK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ IS+++AM+WNDG+ E + CFTNNIPQ+DGG+HL+G R ALTR + ++++ Sbjct: 240 VFHFDFEREDGISVEVAMQWNDGFQEGIYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ VES +N+ LS Sbjct: 300 KEGYSKKEKTSTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKPAVESAMNEKLS 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+ K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLLENPSDAKIVCSKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E ++ Y ++ +L + I+ L + KLI+ Sbjct: 540 KGKQEQYIKDDEDMDQYQVSLALDNASLFATEGAPAITGLALEELVKQYNAGMKLIERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + + D+ + A+ L LN + N Sbjct: 600 RRYPLLMLNEFAYQPRLSIDMLSDETAIEAWATPLVAALNEKQSGESQYSFAIQRDEENN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 S V GV+ + L + S S + + K+ ++ Sbjct: 660 VSLPQVIVRTHGVEYDYTLSYDLLNSREYSKLADLSEALNGLLEDNAYVQRGERKLSVSS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD+LF+ Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+EN+L LD+ Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805 >gi|320539857|ref|ZP_08039516.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson] gi|320030043|gb|EFW12063.1| DNA gyrase, subunit B [Serratia symbiotica str. Tucson] Length = 804 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 409/806 (50%), Positives = 547/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S +V D+GRGIPT LH EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 AIHADNSVSVQDDGRGIPTGLHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG ++E ++ +G PL V G + TGT V F PS F+ Sbjct: 122 VVNALSEKLELVIRREGKVHEQTYGHGEPQAPLKVVGET-DQTGTMVRFWPSYQTFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR+ RE Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLKDKRTD--REDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY+E Sbjct: 239 NVFYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ERDP S Sbjct: 359 DYLMENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLVGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G+++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ YLI+ ++ S ++ L + + + KLI Sbjct: 539 KGKQEQYIKDDEAMDQYLISIAMDGASLHINASAPPLAGEQLEKLVAEYYSVQKLIDRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN---- 659 + + + + + DQ LA LN + + N Sbjct: 599 RRYPRALLNRLIYQPTLGEGDLSDQTKVKEWIGSLAQLLNDKEQHGSNYDFVTFENRERQ 658 Query: 660 -SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ I + ++ + + Sbjct: 659 MFEPALRIRTHGVDTDYQLDFDFIHGGEYRKICQLGEKLRGLIEEGAFIERGERCQPVDS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +L+ + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV I DA AD LF+ Sbjct: 719 FEQVLEWLVKESRRGLSVQRYKGLGEMNPDQLWETTMDPESRRMLRVTIKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRVFIEENALKAANIDI 804 >gi|15603341|ref|NP_246415.1| DNA gyrase subunit B [Pasteurella multocida subsp. multocida str. Pm70] gi|12721859|gb|AAK03560.1| GyrB [Pasteurella multocida subsp. multocida str. Pm70] Length = 806 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 409/810 (50%), Positives = 551/810 (68%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSNNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ITVT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 AKDITVTIHTDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G PL G + TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPQAPLAAIGET-DQTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YD L RLRELSFLNS V I L DKR+ R+ Y+GGI+AFV YL+R+K Sbjct: 179 IFNNIEFEYDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAFVEYLNRNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q P +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHQKPFYFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y++ +KK K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMDNEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESVM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P +AKIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 477 LGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ Y + +L ++ +S L + + + + K+ Sbjct: 537 LYKVKKGKQEQYIKDDEAMVQYEVALALENAALYVNENAPAMSGLALESLVSEYNAVQKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRL-----NFIAEKSEKSW 653 I + + +++ + E Q+ + + L ++L N + Sbjct: 597 IGRLTRYYPEVVLKELIYHPELTSELMADQKEVENWIATLVDKLVAKESNGNHYSYRTVF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + + ++ G+ + L ++ ++ K Sbjct: 657 NSERHLHEAVLTVRTHGIDTDYFLNFQFATGSEYARIVKLGKQLTGLIEEGAYIMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++++ ++ + R+G+ +QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 717 LEVSSFEQAIEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LDI Sbjct: 777 DLLFTTLMGDEVEPRREFIESNALHANLDI 806 >gi|16272510|ref|NP_438724.1| DNA gyrase subunit B [Haemophilus influenzae Rd KW20] gi|1170145|sp|P43701|GYRB_HAEIN RecName: Full=DNA gyrase subunit B gi|1573554|gb|AAC22225.1| DNA gyrase, subunit B (gyrB) [Haemophilus influenzae Rd KW20] Length = 806 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+G GIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGGGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PP Sbjct: 477 LGCGIGRDEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD + +E Y + +L + ++ + + + KL Sbjct: 537 LYKVKKGKQERYIKDADEMEQYELTLALDGAELHISTNAPAMNALVFEKLVAEYNSVQKL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-----SW 653 I ++ ++ + + E +E + +L ++ + + Sbjct: 597 IGRLNRHYPAPVLQGLIYQSPISIEMMKEESAVENWGKSFVEQLTAKETEAHQYSVRTQF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ G+ + L + + ++ +I Sbjct: 657 NAERQVYEAVITVRKHGIDTDYFLNFDFVHGNEYAKIVSLNKQLNGLLEEGAYVIRGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + ++ + RKG+ +QRYKGLGEMNA QLWETT++P++R +L+V I DA A Sbjct: 717 QPVRSFEQAVEWLVKESRKGLEVQRYKGLGEMNADQLWETTMDPNSRRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LD+ Sbjct: 777 DQLFTTLMGDEVEPRREFIELNALRANLDV 806 >gi|222147027|ref|YP_002547984.1| DNA gyrase subunit B [Agrobacterium vitis S4] gi|221734017|gb|ACM34980.1| DNA gyrase subunit B [Agrobacterium vitis S4] Length = 811 Score = 940 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 511/812 (62%), Positives = 638/812 (78%), Gaps = 10/812 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ N +++Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTETTDEANAASTAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ADI+TVTLN DGS TV+DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADIVTVTLNADGSVTVTDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L ++I+R G ++EMSF +G+ D PL VTG +GTE+TF Sbjct: 121 VSGGLHGVGVSVVNALSVKLSMKIRRHGKVHEMSFTHGVADAPLAVTGDYQGRSGTEITF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS++ F+ +F+Y TL+HRLREL+FLNS V+I L DKR + R+ M Y GG+EAFV Y Sbjct: 181 LPSTETFTQVEFDYGTLEHRLRELAFLNSGVRILLTDKRKSDIRQEEMLYDGGLEAFVRY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+ +P+ I+G +D I++++AM WND YHENVLCFTNNIPQ+DGGTH++G R A Sbjct: 241 LDRSKKPLVSNPVAIRGEKDGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQITSY + S +KK+K ++ G+DCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITSYADSSGITKKEKVTLQGEDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ LS W EEHP EAKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA Sbjct: 361 VESLVNEALSTWFEEHPTEAKILVGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRERQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +TRGKS+QY+KDE++LE+YLI L + S V + DLR + DAL Sbjct: 541 IAQPPLYKVTRGKSIQYLKDEKALEEYLIGMGLDDASLKLG-SGEVRAGQDLREVVQDAL 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ LI + +++ +EQA + G N E +++E A+++A RL+ IAE++E+ W Sbjct: 600 RLRSLIDGLHSRYNRNVVEQAAVVGALNHELTANRERAEQTAAEVAKRLDLIAEETERGW 659 Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G + + +R+ RGV+E L+ + I S +++ + R+ + Y L Sbjct: 660 EGFVTEEGGLRFERMVRGVKEVAALDVALIGSADARHIDQLATRLNDIYGQPPVLTRKDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I+GP +LLD +FS GRKG+SMQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ Sbjct: 720 QQTISGPRNLLDAVFSFGRKGLSMQRYKGLGEMNAEQLWETTLDPNVRSLLQVRVNDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFSRLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADSLFSRLMGDEVEPRRDFIQENALNVANLDI 811 >gi|163757528|ref|ZP_02164617.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43] gi|162285030|gb|EDQ35312.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43] Length = 811 Score = 940 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 508/806 (63%), Positives = 640/806 (79%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TDPTVEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D +TVTLN DGS TV+DNGRGIPTD+H+ EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DRVTVTLNPDGSVTVTDNGRGIPTDMHQGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL ++R+G I+E+ F +G+ D PL V G G++TGTEVTF+PSS+ Sbjct: 127 GVGVSVVNALSVWLKLVVRRKGKIHEIRFTHGVADAPLQVLGDCGDETGTEVTFMPSSET 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ DF++ TL+HRLREL+FLNS V+I L D+R + +E+ ++Y+GG+EAFV YLDR KK Sbjct: 187 FTMIDFDFGTLEHRLRELAFLNSGVRILLADRRHSDAKELELYYEGGLEAFVRYLDRSKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL+ P+ + G +D I+++LAM WND YHENVLCFTNNIPQ+DGGTH++G R+ALTRQ+ Sbjct: 247 PLVNDPVTLIGEKDGITVELAMWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAALTRQMV 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + S +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN Sbjct: 307 SYADVSGMTKKEKVSLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 LS+WLEEHP EAK +V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 STLSSWLEEHPTEAKTLVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PAKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPVLIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++RGKS QY+KDE+++E+YL++ L E V + DL++ I DAL++ L+ Sbjct: 547 YKVSRGKSSQYLKDEKAMEEYLVSSGLEEAALELST-GEVRTGADLKDTITDALRMRMLL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHG-SIN 658 + + +D T +EQA I+G N E D + +A+++A RL+ ++E+SE+ W G + Sbjct: 606 ESLHSRYDHTVVEQAAIAGALNPERTTDPASSDDMAAEVARRLDMVSEESERGWTGAATE 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 N + +R+ RGV+E L+ I S ++ + ++ + Y L ++I+G Sbjct: 666 NGGLRFERMVRGVKESVHLDAGLIGSQDARMIDQMNAKLRDVYTEPPVLRRKEGGLQISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LLD +FS+GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA AD LFS Sbjct: 726 PRELLDAVFSVGRKGLALQRYKGLGEMNAEQLWETTLDPNARSLLQVRVNDAVDADSLFS 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALSVANLDI 811 >gi|50123356|ref|YP_052523.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043] gi|49613882|emb|CAG77334.1| DNA gyrase subunit B [Pectobacterium atrosepticum SCRI1043] Length = 805 Score = 940 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 548/806 (67%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I + Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VVNALS LKL I REG ++E ++ +G+ PL VTG + TGT V F PS + FS Sbjct: 122 VVNALSEKLKLVIHREGKLHEQTYKHGVAQAPLAVTGET-DRTGTTVRFWPSHETFSNVL 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I LID R + + Y GGI+AFV YL+R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDDR-EKDKADHYHYDGGIKAFVDYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 NVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNTYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VES VN+ L Sbjct: 300 KEGYSKKSKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESLVNEKLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPSDAKIVVGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P ++ G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPEIVERGHVYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAQAPALAGEPLEKLVSEHYAVQKLIGRME 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + + ++E + A L + LN + Sbjct: 600 RRFPRPLLNRLIYQPTLSEADLSEREKVQAWAESLISGLNANEVHGSTYSFVVHHDEERS 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L + + + ++ + + + Sbjct: 660 VFEPALRVRTHGVDTDYPLGAGFVAGGEYRKLNLLGEKLRGLIEEDAFIERGERRQPVAS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD+LF+ Sbjct: 720 FEQALEWLVKESRRGLTVQRYKGLGEMNPDQLWETTMDPTSRRMLRVTVKDAIAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 780 TLMGDAVEPRRAFIEENALKAMNIDI 805 >gi|220933197|ref|YP_002512096.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219994507|gb|ACL71109.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 807 Score = 940 bits (2431), Expect = 0.0, Method: Composition-based stats. Identities = 416/810 (51%), Positives = 557/810 (68%), Gaps = 10/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Q +YD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MTDPQQAKTYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ DGS +V D+GRGIP D+H EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CNKIQVIIHSDGSVSVQDDGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I R ++ + G+ D PL G TGT V F PS++ Sbjct: 121 HGVGVSVVNALSEWLELTIFRNSRVHRQVYRLGVPDAPLAEVGDTE-LTGTRVHFRPSTE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLRELSFLNS V+I L D+RS + Y+GGI AFV +L+R+K Sbjct: 180 IFSDTEFHYDILSKRLRELSFLNSGVRIQLSDERSGKE--DVFEYQGGIRAFVEHLNRNK 237 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL Q+ I RD+I++++A++WND Y EN+ CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 238 TPLHQNVIYCVADRDDITVEVALQWNDSYQENIFCFTNNIPQRDGGTHMAGFRAALTRGL 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E KK K + GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV++VVE + Sbjct: 298 NQYMEAEGILKKQKVATTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVEGVL 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L ++L E+P +AK+I K++DA+ RDAARRAR++TRRKG LD+A LPGKLADC E+ Sbjct: 358 YDHLQSFLLENPGDAKVITAKIIDAARARDAARRAREMTRRKGALDVAGLPGKLADCQEK 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SELFLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 418 DPALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 477 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 478 LGCGIGKDEFNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPVLIERGHVYIAQPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QYVKDE L + L+ +L + + +S L + + + Sbjct: 538 LYKVKKGKQEQYVKDELELNNLLLQMALEDARLMIHPEAPPVSGEALEDLARRYIGVMGA 597 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658 ++ HD+ +E+ + S + + + + L L A + + ++ Sbjct: 598 VERLSRRHDRDLLERMIFSTPMDPARIEDPQAIRAWFDGLVEGLRSDAAGAARYTVDAVP 657 Query: 659 NS----DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + ++ V R+ G ++ S + R + R++ ++ + Sbjct: 658 DGEGGTEVRVTRLIHGAEQVERFGRDFFASPEYRAIRDLAERLDGLLDQGAAVHRGERRQ 717 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 ++ ++D + R+G+++QRYKGLGEMN QLWETT+N +TR LL+VKI DA +AD Sbjct: 718 PVSNFRQVMDWLLGEARRGLNVQRYKGLGEMNPEQLWETTMNAETRRLLQVKIEDAVRAD 777 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++F+ LMGD+VEPRREFI+ N+L + +DI Sbjct: 778 EVFTTLMGDQVEPRREFIEANALTASNIDI 807 >gi|238793146|ref|ZP_04636774.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909] gi|238727519|gb|EEQ19045.1| DNA gyrase subunit B [Yersinia intermedia ATCC 29909] Length = 804 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 397/806 (49%), Positives = 541/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+R+G ++E ++ G+ PL + G + TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGET-DLTGTTVRFWPSFQTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR+ RE Y+GGI AFV YL ++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDKRND--REDHFHYEGGIRAFVEYLSKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHVNPDAPPLVGEHFEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + + E + V L LN + + Sbjct: 599 RRYPRALLNNLIYQPTLKEEDLSDKAVVTQWIDSLVVLLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ + + + ++ + ++ ++ Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFVHGGEYRKICLLGEKLRGLIEDGAFVERGERRVSVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAVAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|52426304|ref|YP_089441.1| DNA gyrase subunit B [Mannheimia succiniciproducens MBEL55E] gi|52308356|gb|AAU38856.1| GyrB protein [Mannheimia succiniciproducens MBEL55E] Length = 811 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 408/815 (50%), Positives = 548/815 (67%), Gaps = 16/815 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N Q +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSENTQE-NYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CKDIIVTIHEDNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G++YE + G + L G + TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVYEQFYSLGEPNEQLKNIGET-DKTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS F Y+ L+ RLRELSFLNS V I L D+R + Y+GGI+AFV YL+++K Sbjct: 179 IFSNTVFEYEILKKRLRELSFLNSGVSIKLFDER--DGANDHFHYEGGIQAFVEYLNQNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + P ++ I +++A++WNDGY+EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 TTIHPKPFYFSIEKEGIGVEVALQWNDGYNENIYCFTNNIPQRDGGTHLAGFRGALTRTL 296 Query: 301 TSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 SY++K+ + KDK GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+ Sbjct: 297 NSYMDKAGLNKKGKNDKDKVETSGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVKGA 356 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES +N+ L +LEE+P +AKII K++DA+ R+AAR+AR++TRRKG LDIA LPGKLA Sbjct: 357 VESAMNERLQEYLEENPNDAKIIATKIVDAARAREAARKAREMTRRKGALDIAGLPGKLA 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+G Sbjct: 417 DCQERDPAFSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVG 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALG GIG+D ++ +K+RYHK+IIMTDADVDG+HIRTLLLTFF+RQMP +I G++Y Sbjct: 477 TLITALGCGIGRDEYNPDKMRYHKVIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVY 536 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + +GK QY+KDE ++ Y + +L + + ++ L + D Sbjct: 537 IAQPPLYKVKKGKQEQYIKDEPAMTQYELAIALEDAALYVNANAPAMTGLPLEKLVADYN 596 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEK-- 651 ++I+ + + + +++ + E ++ L L + Sbjct: 597 NTHQMIERLHRRYPEALLKELIYYPQLTTELMKDTGATEEWTKNLIAVLTEKDTQGNSYS 656 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + +DI++ GV + L N+++ + Sbjct: 657 FRLQYDTERQVNDIILTVRTHGVDTNYTLNYQFATGNEYARIVKLGNQLKGLLEDGAYVT 716 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K++I+ ++ RKG+++QRYKGLGEMN QLWETT++PD R +L+V I Sbjct: 717 RGNGKLEISSFEQAIEWFVKESRKGLTVQRYKGLGEMNPEQLWETTMDPDARHMLKVTIK 776 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA AD LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 DAVAADQLFTTLMGDEVEPRRDFIESNALRANLDI 811 >gi|114769640|ref|ZP_01447250.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255] gi|114549345|gb|EAU52227.1| DNA gyrase subunit B [alpha proteobacterium HTCC2255] Length = 805 Score = 940 bits (2429), Expect = 0.0, Method: Composition-based stats. Identities = 446/805 (55%), Positives = 580/805 (72%), Gaps = 4/805 (0%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD I++ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L Sbjct: 1 MSDDQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD ++VT++ D S +V DNGRG+P +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADFVSVTIHADESVSVRDNGRGVPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+L+I R+G I+ F +G L + G A +TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS +++ + TL++RLREL+FLNS V+I L D+R E E T+ Y GG++ FV +LDR Sbjct: 181 ETFSNREYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETTLLYDGGVKEFVKFLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +++ PI I G +D+I+++ AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSSVIEDPIYIIGEKDDITVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EE+P AK IV K+++A++ R+AAR+AR+LTRRK SLPGKLADC + Sbjct: 361 MNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPGKLADCQQ 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+F+VEGDSAGGSAKQGRSRENQA+LPLRGKILN+ERARFDKML+S++I LIT Sbjct: 421 KDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSEQITNLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHK++IMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ SLED+L Q + ++ DL ID+A + Sbjct: 541 PLYKVARGKSEVYLKDQVSLEDFLAEQGIEGATL-TLGGGSAMAGPDLARVIDEARQSRT 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 ++ F ++ +EQA I+G N + + A +A RL+ ++ + E+ W G Sbjct: 600 ILNAFPTHYSHHILEQAAIAGALNIDQVLSNPQAAADAVATRLDLVSTEYERGWSGRPTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + RI RGV+E L+G + S ++ +N ++E Y I Sbjct: 660 DDGLRFSRILRGVEEVQTLDGKCLKSNEARKLSSMTNSLQEVYSEPSKFTRKEKTTTINA 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ + S G KG+S+QRYKGLGEMN QLWETTL+P+ R L+VK+ D + ADDLF+ Sbjct: 720 PSDLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVEDLADADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|307133244|ref|YP_003885260.1| DNA gyrase subunit B [Dickeya dadantii 3937] gi|306530773|gb|ADN00704.1| DNA gyrase subunit B [Dickeya dadantii 3937] Length = 803 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 407/804 (50%), Positives = 544/804 (67%), Gaps = 9/804 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G PL VTG A T V F PS + F+ Sbjct: 122 VVNALSEKLELVIRREGKIHRQEYRHGEPQAPLSVTGDADTTG-TTVRFWPSLETFTNVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L D+R E + Y+GGI+AFV YL+R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDER-EENKADHFHYEGGIKAFVEYLNRNKTPIHP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 240 QVFYFSAEKDDIGVEIAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VES +ND L Sbjct: 300 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESLMNDRLV 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 360 DYLMENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVFIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I +L ++ L + + + KLI Sbjct: 540 KGKQEQYIKDDEAMDQYQIMLALDGATLHTNAHAPALAGEPLEKLVAEHYGVQKLIDRME 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKS---WHGSINNS 660 + + + + DQ L + LN + S Sbjct: 600 RRYPRALLNALLYQPTLTEAMLNDQAQAQQWIDSLIHYLNEKEQHGSTYSFLLRQSNERH 659 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +++ GV + L+ + + + ++ + K + Sbjct: 660 EPVLRVRTHGVDSDYALDLAFVQGNEYRKINGLGEKLRGLIEDDAFVERGERKQPVASFE 719 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD+LF+ L Sbjct: 720 QALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADELFTTL 779 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD VEPRR FI+EN+L + +DI Sbjct: 780 MGDAVEPRRAFIEENALKAANIDI 803 >gi|222084213|ref|YP_002542739.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84] gi|221721661|gb|ACM24817.1| DNA gyrase, B subunit [Agrobacterium radiobacter K84] Length = 811 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 517/806 (64%), Positives = 644/806 (79%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N N+ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA Sbjct: 7 TENDGNAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGGYA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D++TVTLN DGS TV+DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 DLVTVTLNPDGSVTVTDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R+G I EMSF +G+ D PL VTG AG++TGTEV+F+PSS+ Sbjct: 127 GVGVSVVNALSVWLKLKIRRQGKINEMSFTHGVADAPLKVTGDAGSETGTEVSFMPSSET 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+Y TL+HRLREL+FLNS V+I L DKR + R+ M Y GG+EAFV YLDR KK Sbjct: 187 FTMTEFDYSTLEHRLRELAFLNSGVRILLTDKRHSDVRQEEMLYDGGLEAFVKYLDRAKK 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL+ P+ I+ +D I++++AM WN+ YHENVLCFTNNIPQ+DGGTH++G R ALTRQIT Sbjct: 247 PLVDKPVSIRSEKDGITVEVAMWWNESYHENVLCFTNNIPQRDGGTHMAGFRGALTRQIT 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY E S +K++K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN Sbjct: 307 SYGESSGITKREKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L WLEEHP +AK++V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADCSERD Sbjct: 367 EALGTWLEEHPADAKVLVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCSERD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL Sbjct: 427 PAKSEVFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 487 GTGIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPDLIERGHLYIAQPPL 546 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS+QYVKDE++ E+YLI Q L + V + DLR I DAL++ L+ Sbjct: 547 YKVTRGKSVQYVKDEKAFEEYLIGQGLDDASLKLGT-GEVRAGEDLRELIFDALRLRTLL 605 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 + + +++ +EQA I+G N E SD L + +A RL+ IAE++E+ W G++ + Sbjct: 606 GNLHSRYNRAVVEQAAIAGALNAELVSDPARAEGLVNDVARRLDIIAEETERGWTGAVTS 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +R+ RGV+E VL+ + I S ++ +R+++ Y L + +I+G Sbjct: 666 EGGLRFERMVRGVKEVVVLDMALIGSQDARLIDQVGSRLKDVYDQPPKLARRDGETEISG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+T+F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ RSLL+V++ DA+ AD LF+ Sbjct: 726 PGMLLETVFAAGRKGLTMQRYKGLGEMNAEQLWETTLDPNARSLLQVRVPDATDADGLFA 785 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRREFIQ+N+L LDI Sbjct: 786 RLMGDEVEPRREFIQDNALNVANLDI 811 >gi|54307248|ref|YP_128268.1| DNA gyrase subunit B [Photobacterium profundum SS9] gi|46911668|emb|CAG18466.1| Putative DNA gyrase, subunit B [Photobacterium profundum SS9] Length = 805 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 547/806 (67%), Gaps = 11/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I + Sbjct: 2 SNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIII 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +VSD+GRGIPTD+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHEDNSVSVSDDGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS ++L I R G I+ + +G+ D PL G + TGT + F PS F+ Sbjct: 122 VVNALSEKVELTIYRHGFIHHQIYRHGVPDKPLETIGET-DKTGTLLRFWPSEGTFTNVV 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L RLRELSFLNS V I LID+R E ++ Y+GGI AFV++L+R+K P+ Sbjct: 181 FHYEILAKRLRELSFLNSGVSIRLIDER-EEGKQDHFMYEGGIRAFVAHLNRNKTPIHAK 239 Query: 247 PIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 R++ I +++AM+WNDG+ EN+ CFTNNIPQ+DGG+HL+G R ALTR + ++++ Sbjct: 240 VFHFDFEREDGIVVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLAGFRGALTRTLNTFMD 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS Sbjct: 300 KEGYSKKEKTSTCGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESVMGEKLS 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+ K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP S Sbjct: 360 EFLLENPSDAKIVCGKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GI Sbjct: 420 ELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + Sbjct: 480 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E ++ Y ++ +L + I+ L + KLI+ Sbjct: 540 KGKQEQYIKDDEDMDQYQVSLALDNASLFATEGAPAITGLALEELVKQYNAGMKLIERMS 599 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + E D+ + A++L LN + N Sbjct: 600 RRYPLLMLNEFAYQPRLSIEMLSDETAIEAWATQLVAALNEKQSGESQYRFAIQRDEEKN 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 V GV+ + L + S S + K I+ Sbjct: 660 VFLPQVIVRTHGVEYDYTLSYDLLNSKEYSKLADLSEAFNGLIEDNAYVQRGERKQSISS 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD+LF+ Sbjct: 720 FKEGLDWLIKESRRGVYLQRYKGLGEMNPEQLWETTMDPESRRMLQVTINDAVAADELFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+EN+L LD+ Sbjct: 780 TLMGDQVEPRRNFIEENALKVANLDV 805 >gi|121601805|ref|YP_989593.1| DNA gyrase subunit B [Bartonella bacilliformis KC583] gi|120613982|gb|ABM44583.1| DNA gyrase, B subunit [Bartonella bacilliformis KC583] Length = 809 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 489/810 (60%), Positives = 618/810 (76%), Gaps = 8/810 (0%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETTSPTSGDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GYA ++ VTL+ DGSC+V DNGRGIPTD+H E +SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYATLVNVTLHADGSCSVCDNGRGIPTDIHPTEHVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRIKR+G I+EMSF +G+ D PL V G G ++GTE++FLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADAPLKVVGQCGTESGTEISFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F++ F+++TL+ RLREL+FLNS V I L+++ + R + ++Y+GG+ F+ Y+D Sbjct: 181 SPETFTMVKFDFETLERRLRELAFLNSGVHILLVNQHHADVRSVELYYEGGLIEFIKYID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + KKPL+ +PI I +D IS+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKKPLIDAPIYITSEKDGISVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLSAWLEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGKS QY+K+E + ED+LI+ L E S V + DLR F+ DA + Sbjct: 541 QPPLYKVSRGKSSQYIKNEAAFEDFLIDSGLEETTLELS-SGEVCAGIDLRQFVQDARLL 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +D+ +EQA I+G FN E+ E +A +A RL+ IA+ E+ W G Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGAFNFEAFATPETAQKIADTIAKRLDLIADDMERGWSG 659 Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + + +R+ RGV++ L+ I S ++ + +++ Y L Sbjct: 660 QYTSDGSLCFERVLRGVKDVITLDAGFINSADARQIGHIAKNLKDIYRDPPLLRRKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I GP SLL++IF G+KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VKI DA+ AD Sbjct: 720 RIFGPTSLLESIFINGKKGITLQRYKGLGEMNADQLWETTLDPDARSLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFS+LMGDEVEPRR FIQ+N+L LDI Sbjct: 780 SLFSQLMGDEVEPRRIFIQKNALNVANLDI 809 >gi|260913523|ref|ZP_05920001.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis ATCC 43325] gi|260632463|gb|EEX50636.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella dagmatis ATCC 43325] Length = 806 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 414/810 (51%), Positives = 551/810 (68%), Gaps = 11/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +Y A+SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSNNTPE-NYGANSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ITVT++ D S +V D+GRGIP D+H EEGISAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 AKDITVTIHTDNSVSVQDDGRGIPVDIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++E + G + PL G + TGT V F PS Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGKVHEQIYHLGEPEAPLAAIGET-DQTGTSVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F YD L RLRELSFLNS V I L DKR+ R+ Y+GGI+AFV YL+R+K Sbjct: 179 IFNNIEFEYDILAKRLRELSFLNSGVSIKLFDKRND--RQDHFHYEGGIQAFVEYLNRNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q P +D I ++++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHQKPFYFSTEKDGIGVEVSMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NNYMENEGHNKKSKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESVM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P +AKIIV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC ER Sbjct: 357 NEYLQQYLLENPSDAKIIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 477 LGCGIGRDEYNPEKLRYHSIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHVYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++ Y + +L + ++ L N + + + K+ Sbjct: 537 LYKVKKGKQEQYIKDDEAMVQYEVALALENAALYVNANAPAMNGLALENLVSEYNAVHKM 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRL-----NFIAEKSEKSW 653 I ++ +T +++ + E + + A L +L N + Sbjct: 597 IGRLTRHYPETVLKELIYHPELTTELMAQESAVDIWAKSLVEKLVAKESNGNHYSYRTVF 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + + ++ G+ + L ++ ++ K Sbjct: 657 NSERHLYEAVLTVRTHGIDTDYFLNFQFATGSEYGRIMKLGKQLFGLIEEGAYIMRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++IT ++ + R+G+ +QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 717 LEITSFEQAVEWLVKESRRGLMVQRYKGLGEMNPEQLWETTMDPNARRMLKVSIKDAVAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D LF+ LMGDEVEPRREFI+ N+L + LDI Sbjct: 777 DQLFTTLMGDEVEPRREFIESNALHANLDI 806 >gi|300721093|ref|YP_003710361.1| DNA gyrase subunit B [Xenorhabdus nematophila ATCC 19061] gi|297627578|emb|CBJ88097.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus nematophila ATCC 19061] Length = 804 Score = 939 bits (2428), Expect = 0.0, Method: Composition-based stats. Identities = 407/806 (50%), Positives = 546/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E ++ +G+ +PL + G TGT V F PS D F Sbjct: 122 VVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTE-QTGTTVRFWPSMDTFKINT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L+DKR+ E YKGGI+AFV +L R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDLFHYKGGIKAFVEFLSRNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y ++ +L + L N + + KLI Sbjct: 539 KGKQEQYIKDDDAMEAYQMSIALDGAALYTNPHAPGLKGEALENLVTEFNTTQKLIHRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + + +DQ S L RLN + + Sbjct: 599 RLYPLALLNSLIYHPKLTEDALNDQTKVEEWVSALTIRLNDKEQHGSTYSYHIHENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ I + + I + + I+ Sbjct: 659 VFEPVLCIRTHGVDTNYSLDFDFIHGGEYRRITKLGDLIGNLIDEDAYIERGERRQAISS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT+NP+TR ++RV + DA D LF+ Sbjct: 719 FEHALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|220925683|ref|YP_002500985.1| DNA gyrase subunit B [Methylobacterium nodulans ORS 2060] gi|219950290|gb|ACL60682.1| DNA gyrase, B subunit [Methylobacterium nodulans ORS 2060] Length = 808 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 477/809 (58%), Positives = 608/809 (75%), Gaps = 7/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ ++ +Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MAEPARDLTTDTYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A ++TVTLN DGSCTVSDNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHATLVTVTLNPDGSCTVSDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+WL+LRI R G+ + M F +G PL V G AG GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGHEHAMEFRHGDAVAPLAVVGPAGEKRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + FS+ +F+Y TL+ RLREL+FLNS V+I L D R E + + Y+GG+EAFV YLD Sbjct: 181 SPETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLD 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K PL+ P+ ++ RD I +++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALT Sbjct: 241 RTKTPLVAKPVVVRAERDGIGVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQIT Y E S +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE Sbjct: 301 RQITGYAESSGIAKKEKVTLSGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + +N+GLS WLEEHP EAK IV KV +A+ R+AAR+AR+LTRRKG LDIASLPGKLADC Sbjct: 361 NVLNEGLSNWLEEHPSEAKTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP K E+ LVEGDSAGGSAKQGR R QA+LPLRGKILNVERARFDKMLSSQEIGTL Sbjct: 421 QERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++G+S Y+KDE +LEDYLI+ + L+ +D+A + Sbjct: 541 QPPLYKASKGRSAIYLKDERALEDYLIDGGIEGASLRLAT-GVAFGGAQLKALVDEARSV 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG 655 ++ + +D+T +EQA I+G ++ +A ++A RLN IA++ E+ W G Sbjct: 600 RHILHGLHTRYDRTVVEQAAIAGALRPAVAEDPSHAEVVADEIAKRLNAIADEIERGWEG 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + ++ R RGV++ VL+ + I S ++ ++ + + Y +L G++I Sbjct: 660 EAKDGGYVLSRTLRGVRQVAVLDEALISSQEARRLDERTDALRQIYDAPATLQRKGEEIV 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + GP +L +T+ ++GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ D + ADD Sbjct: 720 LHGPVALFETMMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVKDTTDADD 779 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 LFVKLMGDVVEPRREFIQENALNVANLDV 808 >gi|297184292|gb|ADI20409.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b subunit [uncultured alpha proteobacterium EB080_L43F08] Length = 805 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 447/805 (55%), Positives = 580/805 (72%), Gaps = 4/805 (0%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD I++ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L Sbjct: 1 MSDDQIKSEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAK 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD ++VT++ D S +V DNGRG+P +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADFVSVTIHADESVSVRDNGRGVPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+L+I R+G I+ F +G L + G A +TGTEV F+ S+ Sbjct: 121 LHGVGVSVVNALSDWLELKIWRDGKIHIARFEHGDTVKHLEIIGDANGETGTEVRFMAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS +++ + TL++RLREL+FLNS V+I L D+R E E T+ Y GG++ FV +LDR Sbjct: 181 ETFSNREYVFKTLENRLRELAFLNSGVKIILRDERPTEHLETTLLYDGGVKEFVKFLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +++ PI I G +D+I+++ AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSSVIEDPIYIIGEKDDITVECAMWWNDSYHENVLPFTNNIPQRDGGTHIAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y S +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES Sbjct: 301 INNYAASSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EE+P AK IV K+++A++ R+AAR+AR+LTRRK SLPGKLADC + Sbjct: 361 MNEKLSEWFEENPAHAKEIVTKIVEAALAREAARKARELTRRKTAFGGTSLPGKLADCQQ 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+F+VEGDSAGGSAKQGRSRENQA+LPLRGKILN+ERARFDKML+S++I LIT Sbjct: 421 KDPSLSEIFIVEGDSAGGSAKQGRSRENQAVLPLRGKILNIERARFDKMLTSEQITNLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+KLRYHK++IMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFDISKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGKS Y+KD+ SLED+L Q + ++ DL ID+A + Sbjct: 541 PLYKVARGKSEVYLKDQVSLEDFLAEQGIEGARL-TLGGGSAMAGPDLARVIDEARQSRT 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 ++ F ++ +EQA I+G N + S A +A RL+ ++ + E+ W G Sbjct: 600 ILNAFPTHYSHHILEQAAIAGALNIDQVLSNPQSAADAVATRLDLVSTEYERGWSGRPTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + RI RGV+E L+G + S ++ +N ++E Y I Sbjct: 660 DDGLRFSRILRGVEEVQTLDGKCLKSNEARKLSSMTNSLQEVYSEPSKFTRKEKTTTINA 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL+ + S G KG+S+QRYKGLGEMN QLWETTL+P+ R L+VK+ D + ADDLF+ Sbjct: 720 PSDLLNIVNSEGEKGLSLQRYKGLGEMNPGQLWETTLDPEARIFLQVKVEDLADADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ+N+L LD Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLD 804 >gi|319406439|emb|CBI80079.1| DNA gyrase subunit B [Bartonella sp. 1-1C] Length = 809 Score = 939 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 488/810 (60%), Positives = 615/810 (75%), Gaps = 8/810 (0%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETTSPVCDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GYA ++ VTL+ DGSC+V DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D PL + +++GTE+TFLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADFPLKIVDDCDSESGTEITFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 SS+ F++ +F+++TL+ RLREL+FLNS + I L D+R + + + + Y+GG+ FV ++D Sbjct: 181 SSETFTMVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVELHYEGGLIEFVKHID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + KK L+ +PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKKALIDNPIYITNEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLSAWLEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGKS QY+K+E + E++LI+ L E V++ DLR +DA + Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGLEETTLELST-GEVLAGADLRKLAEDARML 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +D+ +EQA I+G+FN E + E A +ANRL+ IA+ E+ W G Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFNSESFTTPEKAQQTADNVANRLDLIADDMERGWTG 659 Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + +RI RGV+E L+ I S ++ + + E Y L Sbjct: 660 ICAPEGGLYFERILRGVKEVITLDAGLINSADARQIDRIAQNLIEVYSPPPLLHRKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I GP SLL++IF G+KG+++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ AD Sbjct: 720 RIFGPISLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809 >gi|148358143|ref|YP_001249350.1| DNA gyrase subunit B [Legionella pneumophila str. Corby] gi|148279916|gb|ABQ54004.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Corby] Length = 805 Score = 938 bits (2425), Expect = 0.0, Method: Composition-based stats. Identities = 408/811 (50%), Positives = 551/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+++I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDESL GY Sbjct: 1 MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G +YE + +G+ ++P+ TG + N TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGES-NSTGTQIWFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+R+ + T Y+GGI+AFV +L+++K Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VES V Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P AK IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ L+ G++YI +PP Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L DYL +L IS L + +++K+ Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEAPPISAKSLEELVQHFRRVEKI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHG--- 655 IK + + +++ + + E ++ S +L L + K+E+ Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLSKIESWCRQLHLSLQQVDSKTEQYKVDIQK 654 Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G++ ++ S K +++ + Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + +L+ + +KG ++QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD VEPRR+FI+ N+L + +DI Sbjct: 775 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 805 >gi|290473098|ref|YP_003465959.1| DNA gyrase subunit B (type II topoisomerase) [Xenorhabdus bovienii SS-2004] gi|289172392|emb|CBJ79159.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus bovienii SS-2004] Length = 804 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 545/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHTDNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E ++ +G+ PL G TGT V F PS D F Sbjct: 122 VVNALSEKLELIIRRDGKVHEQTYQHGVPQAPLKTVGDTE-QTGTTVRFWPSMDTFKLNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L+DKR+ E Y+GGI+AFV +L R+K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLVDKRT--NAEDHFHYEGGIKAFVEFLSRNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I ++++M+WNDG+ EN+ CFTNNIPQ+DGG HL G R+A+TR + SY++ Sbjct: 239 NVFYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGAHLVGFRAAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K + GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYNKKSKINATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETQMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y ++ +L + L + + +K+IK Sbjct: 539 KGKQEQYIKDDDAMEAYQMSIALDGASLYTNQYAPALKGEALEKLVTEFNASNKIIKRME 598 Query: 606 PNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEK-----SEKSWHGSIN 658 + + + + + +DQ S LA LN + + + Sbjct: 599 RLYPQALLNNLIYHPTLTEDALNDQAKVEEWVSTLAISLNDKEQNGSTYSYQIHENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ I + I + + ++ Sbjct: 659 IYEPVLCIRTHGVDTNYNLDFDFIHGGEYRRITKLGELIGNLIEEGAYIERGERRQLVSN 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+S+QRYKGLGEMN QLWETT+NP+TR ++RV + DA D LF+ Sbjct: 719 FEQALEWLTKESRRGLSIQRYKGLGEMNPDQLWETTMNPETRRMMRVTVKDAIATDLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|254360771|ref|ZP_04976919.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia haemolytica PHL213] gi|261492363|ref|ZP_05988924.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|153091341|gb|EDN73315.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mannheimia haemolytica PHL213] gi|261311967|gb|EEY13109.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 810 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 413/813 (50%), Positives = 551/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL + G+ TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTE-KTGTSVRFWPSLD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I LID+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ LS +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D +++ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L N I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLIAQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSE 650 KLI+ + + + + S + E +Q + + + L + Sbjct: 598 QKLIERLSRRYPTLLLNELIYSKPLSVEFAKNQANMTAWSEQFVATLMAKEVGGSFYRIN 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I N + + ++ Sbjct: 658 TLFNEERQIYEPEIIVTTHGMDSTYRLDYNFINGNEYARIVALGNELNDLLSDSAYVVRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + +I+ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIETNALYAQLDI 810 >gi|54295987|ref|YP_122356.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Paris] gi|53749772|emb|CAH11152.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Paris] Length = 805 Score = 938 bits (2424), Expect = 0.0, Method: Composition-based stats. Identities = 407/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+++I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDESL GY Sbjct: 1 MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G +YE + +G+ ++P+ TG A N TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+R+ + T Y+GGI+AFV +L+++K Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VES V Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P +K IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 AEKFNDFLLENPTASKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ L+ G++YI +PP Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L DYL +L IS L + +++K+ Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEAPPISAKSLEELVQHFRRVEKI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655 IK + + +++ + + E + +L L + K+E+ Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDIQK 654 Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G++ ++ S K +++ + Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + +L+ + +KG ++QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD VEPRR+FI+ N+L + +DI Sbjct: 775 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 805 >gi|290511692|ref|ZP_06551060.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55] gi|289775482|gb|EFD83482.1| DNA gyrase, B subunit [Klebsiella sp. 1_1_55] Length = 806 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 406/808 (50%), Positives = 550/808 (68%), Gaps = 14/808 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+ +++ +++G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDNKVHKQIYVHGVPQAPLAVTGET-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYDILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDDALKIDKLIKD 603 +GK QY+KD+E+++ Y I +L + ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQIAIALDGATLHTNANANAPALAGEPLEKLVAEFNATQKMIGR 598 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 K +++ + D++ + L + LN + K + + Sbjct: 599 MERRFPKAMLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDVRENSE 658 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + + +++ GV + L+ I + ++ + + + Sbjct: 659 LQQFEPIIRVRTHGVDTDYPLDNEFIMGPEYRRICTLGEKLRGLMEEDAYIERGERRQPV 718 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + R+G+S+QRYKGLGEMN QLWETT++PD+R +LRV + DA AD L Sbjct: 719 ASFEQALDWLVKESRRGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQL 778 Query: 777 FSRLMGDEVEPRREFIQENSLP-SALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 779 FTTLMGDAVEPRRAFIEENALKAANIDI 806 >gi|319403524|emb|CBI77105.1| DNA gyrase subunit B [Bartonella rochalimae ATCC BAA-1498] Length = 809 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 485/810 (59%), Positives = 615/810 (75%), Gaps = 8/810 (0%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETTSPACGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GYA ++ VTL+ DGSC+V DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+PL + +++GTE+TFLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSPLKIVDDCDSESGTEITFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 SS+ F++ +F+++TL+ RLREL+FLNS + I L D+R + + + + Y+GG+ FV ++D Sbjct: 181 SSETFTMVEFDFETLERRLRELAFLNSGIHIILTDQRHADVQSVELHYEGGLIEFVKHID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + KK L+ +PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKKALIDNPIYITNQKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLS+WLEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSSWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGKS QY+K+E + E++LI+ L E V++ DLR +DA + Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGLEETTLELAT-GEVLAGADLRKLAEDARML 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +D+ +EQA I+G+F + + E A +ANRL+ IA+ E+ W G Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFGSKAFTTPEKAQQTADNVANRLDLIADDMERGWTG 659 Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + +RI RGV+E L+ I S ++ + + E Y L Sbjct: 660 ICAPEGGLYFERILRGVKEVITLDAGLINSADARQIDRIAQNLIEVYSPPPLLHRKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I GP SLL++IF G+KG+++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ AD Sbjct: 720 RIFGPISLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLNPDARTLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809 >gi|238759587|ref|ZP_04620749.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236] gi|238702246|gb|EEP94801.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236] Length = 804 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 393/806 (48%), Positives = 538/806 (66%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I+R+G ++E ++ G+ PL + G TGT V F PS F + Sbjct: 122 VVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMVGETE-LTGTTVRFWPSFQTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L D R+ + Y+GGI AFV YL+++K P+ Sbjct: 181 EFQYEILAKRLRELSFLNSGVSIKLKDNRNDKE--DHFHYEGGIRAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KVFYFSTMKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++E Y + +L + + + + K I Sbjct: 539 KGKQEQYIKDDDAMEQYQMTLALDGAALHINAEAPPLVGEHFEKLVAEHYSVQKTIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSE-----KSWHGSIN 658 + + + E + V L LN + + Sbjct: 599 RRFPRALLNNLIYQPTLKEEDLSDKEVVMQWIDSLVALLNEKEQHGSSYSSVVRENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ GV + L+ + + + +++ + ++ ++ Sbjct: 659 LFEPILRIRTHGVDTDYDLDFDFVHGGEYRKICLLGDKLRGLIEEGAFVERGERRVPVSS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT++P +R +LRV + DA AD LF+ Sbjct: 719 FEDALEWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALRAANIDI 804 >gi|163867345|ref|YP_001608539.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476] gi|161016986|emb|CAK00544.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476] Length = 816 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 484/806 (60%), Positives = 608/806 (75%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 12 TSPTKGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ++ VTL+ DGSC+V DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 72 TLVNVTLHADGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WLKL+I+R G I+E+SF +G+ D PL V G ++GTE+ FLPSS+ Sbjct: 132 GVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVVGDCDQESGTEIRFLPSSET 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ +F+++TL+ RLREL+FLNS V I L+D+R + + + + Y+GG+ FV Y+D+ KK Sbjct: 192 FTMVEFDFETLERRLRELAFLNSGVHILLVDERHADIKAVELHYEGGLIEFVKYIDQSKK 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L+ +PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSALTRQI Sbjct: 252 ALLDTPIYIASEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSALTRQIN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE+ VN Sbjct: 312 GYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVENLVN 371 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 +GLS WLEEHP EAK+++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC ERD Sbjct: 372 EGLSTWLEEHPNEAKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLADCQERD 431 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS IGTLITAL Sbjct: 432 PAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGTLITAL 491 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPL Sbjct: 492 GTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPL 551 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++RGKS QY+K+E + E++LI+ L E V + DL DA +L+ Sbjct: 552 YKVSRGKSSQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLYQLAKDARVFRQLL 610 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 + +D+ +EQA I G FN E+ QE +A + +RLN IA+ E+ W G I Sbjct: 611 NGLHTRYDRNVVEQAAIVGAFNPEAFATQEKAQKIAEAVEHRLNLIADDMEQGWSGQYIE 670 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + +RI RGV++ L+ I S ++ S + Y L L +I G Sbjct: 671 DGSLCFERILRGVKDVITLDAGLINSADARQIDRISQNFSDLYHPPLLLRRKDKTERIFG 730 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTL+P+ RSLL+VKI DA+ AD LFS Sbjct: 731 PMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPNARSLLQVKINDATDADSLFS 790 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 RLMGDEVEPRR FIQ+N+L LDI Sbjct: 791 RLMGDEVEPRRIFIQDNALSVANLDI 816 >gi|261346739|ref|ZP_05974383.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541] gi|282565139|gb|EFB70674.1| DNA gyrase, B subunit [Providencia rustigianii DSM 4541] Length = 804 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 544/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E + +G PL V G + TGT V F PS D F + Sbjct: 122 VVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGIT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I LIDKR + Y GGI+AFV YL R+K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYDGGIKAFVEYLSRNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 S +D I +++AM+WNDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E Sbjct: 239 SVFYFSTEKDGIGVEVAMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK K S GDD REG +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYQKKTKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 RGK QY+KD+E+++DYLI+ +L + L + + ++I+ Sbjct: 539 RGKQEQYIKDDEAMDDYLISIALDGAELHLSADAPAMKGEQLEKLVIEYNAAHRIIRRLE 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + V ++ ++ AS L RL + + Sbjct: 599 RIYPPALLNSLVYQSTLTEDALKDKAQVEEWASTLVKRLEENEQAGSSYSYIIHENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ + + + I + + I Sbjct: 659 LFEPTIRIRTHGVDSDYNLDFDFVHGSEYRRITELGDIIGGLIEEGAYIQRGERRQNIDN 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+++QRYKGLGEMN QLWETT+NPDTR ++RV + DA D LF+ Sbjct: 719 FEQALDWLSRESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAIATDQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|127510939|ref|YP_001092136.1| DNA gyrase, B subunit [Shewanella loihica PV-4] gi|126636234|gb|ABO21877.1| DNA gyrase subunit B [Shewanella loihica PV-4] Length = 805 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 400/812 (49%), Positives = 542/812 (66%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN----SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + + +T++ DGS +V D+GRGIP +H EEG+SAA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CNDVIITIHADGSVSVKDDGRGIPVAIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+R+G +YE + G D P+ G A +TGTE+ F PS++ Sbjct: 117 HGVGVSVVNALSEKLKLTIRRDGKLYEQFYTMGEPDAPIAEIGDAT-NTGTEIRFWPSAE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I LID+R + Y+GGI AFV YL+ +K Sbjct: 176 TFSDTLFHFDILAKRVRELSFLNSGVGIRLIDERDNKD--EFFKYEGGISAFVDYLNLNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPVNKEIFHFVQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRN 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY++K +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 294 LNSYMDKEGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L +L E+P EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E Sbjct: 354 MGEKLGDYLLENPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G+++I +P Sbjct: 474 ALGCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVFIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+ +L +YL N +L +S L + +++ Sbjct: 534 PLYKVKKGKQEQYLKDDPALTEYLTNLALDGGEIHPSQDAPAMSGAPLEKLVYQYREVEA 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652 + E+ + + + D+ L +E Sbjct: 594 IFDRLEQRFPIMLTERMLYQPGLSNDILADEAKVKQWCDNYVAALTEAESGGFIFSAEAF 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G+ ++ + S + + +E + Sbjct: 654 LDPERQVYLPKVTVRKHGIDTHYLFSYDFLQSSDYQRMTALAEALEGLIEEGGYVKRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +I+ LD + + ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA Sbjct: 714 MKEISSFVDALDWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLKVTIEDAIA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 774 ADQLFTCLMGDQVEPRRDFIESNALNVANLDV 805 >gi|319407911|emb|CBI81565.1| DNA gyrase subunit B [Bartonella schoenbuchensis R1] Length = 809 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 489/810 (60%), Positives = 611/810 (75%), Gaps = 8/810 (0%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD NS Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETTSSSNSEYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A ++ VTL+ DGSC+V DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+L+IKR G I+EMSF G+ D+PL + G ++GTE++FLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLQIKRNGKIHEMSFTRGVADSPLKIVGDCDTESGTEISFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 SS+IF+ F+++TL+ RLREL+FLNS V I L D+R + + + + Y GG+ FV Y+D Sbjct: 181 SSEIFTKTKFDFETLERRLRELAFLNSGVHILLTDQRHADVQSVKLHYDGGLIEFVKYID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + KK L+ +PI I +D +S+++A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKKVLIDNPIYITNEKDGMSVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGITKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLSAWLEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGKS QY+K+E + E++LI+ L + + + DLR + DA + Sbjct: 541 QPPLYKVSRGKSFQYIKNETAFEEFLIDAGLEDTALELST-GEIRTGADLRQLVQDACLL 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +D+ +EQA I+GVFN E+ E + +RL+ IA+ E+ W G Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGVFNSEAFATPEKTQKTIDNVVHRLDLIADDMERGWSG 659 Query: 656 -SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 S + + +RI RGV+E VL+ I S ++ + E Y L Sbjct: 660 YSTPDGGLCFERILRGVKEAVVLDTGLINSADARQIDRVCQNLTEIYNPPTLLRRKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 I GP SLL++IF G+KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VKI DA+ AD Sbjct: 720 HIFGPMSLLESIFVNGKKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFSRLMGDEVEPRR FIQ N+L LDI Sbjct: 780 SLFSRLMGDEVEPRRVFIQNNALSVANLDI 809 >gi|84684515|ref|ZP_01012416.1| DNA gyrase subunit B [Maritimibacter alkaliphilus HTCC2654] gi|84667494|gb|EAQ13963.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2654] Length = 805 Score = 937 bits (2423), Expect = 0.0, Method: Composition-based stats. Identities = 462/806 (57%), Positives = 593/806 (73%), Gaps = 4/806 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+D+ QN+ Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MADDAQNNSEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD +TVT++ D S +V DNGRGIP +H EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADYVTVTVHADSSVSVYDNGRGIPVGMHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R+G + F G L V G A TGTEV FL S+ Sbjct: 121 LHGVGVSVVNALSDWLELRIWRDGKEHIARFERGDTAKHLEVVGDANGKTGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D FS ++++ TL+ RLREL+FLNS V+I L D+R EP E + Y+GG++ FV YLDRH Sbjct: 181 DTFSNLEYSFKTLETRLRELAFLNSGVRIILKDERPAEPLETELHYEGGVKEFVKYLDRH 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+++ PI I G RD I I++AM WND Y+E VL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KQPMIEEPIFITGERDGIGIEVAMWWNDSYNEMVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 301 MNLYANSSGLAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EEHP EAK+IV K+++A++ R+AAR+AR+LTR+K D+ASLPGKLADC E Sbjct: 361 MNERLSDWFEEHPNEAKMIVGKIIEAALAREAARKARELTRKKATHDVASLPGKLADCQE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K ELF+VEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+ML S+ +GTLIT Sbjct: 421 KDPSKRELFIVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSETVGTLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP +I G+LYI +P Sbjct: 481 ALGTGIGRDEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIDGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RG+S Y+KD +LEDYLI Q + + + I+ DL I+ A + Sbjct: 541 PLYKVSRGRSEVYIKDVPALEDYLIQQGIEGAVL-RLKTGEEIAGPDLARIIEGARSFKR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-N 658 ++ F ++ + +EQA ++G F+ + ++A ++A RL+ +A + EK W+G I Sbjct: 600 ILDAFPTHYPRNILEQAALAGAFDPGAADSDLQAVADRVAERLDQVAVEYEKGWNGRITQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G+ + S ++ S Y SL+ +I G Sbjct: 660 DHGIRLSRILRGVEEIRTLDGAVLRSGEARRLSQVSEETRGYYQDPSSLVRKDRDQEIYG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL I + G KG+++QRYKGLGEMN QLWETTL+P+ R+LL+VK+ D + ADDLF+ Sbjct: 720 PTDLLQAILAEGEKGLTLQRYKGLGEMNPDQLWETTLDPEARTLLQVKVDDLADADDLFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD VEPRREFIQ+N+L LDI Sbjct: 780 KLMGDVVEPRREFIQQNALSVENLDI 805 >gi|304414285|ref|ZP_07395653.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1] gi|304283499|gb|EFL91895.1| DNA gyrase B subunit [Candidatus Regiella insecticola LSR1] Length = 804 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 402/806 (49%), Positives = 542/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNIYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++MD S +V D+GRGIPT LH+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVG+S Sbjct: 62 KIHMDNSVSVQDDGRGIPTGLHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS-SDIFSVQ 185 VVNALS L+L I REG I+E +++ G PL + G TGT V F PS + Sbjct: 122 VVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTGTRVRFWPSLQTFTNNT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS + I L D+R + Y+GGI AFV YL+++K P+ Sbjct: 181 EFQYDPLAKRLRELSFLNSGISIKLHDERDNKE--DHFHYEGGIRAFVEYLNKNKNPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL G R+A+TR + SY++ Sbjct: 239 KIFYFSTIKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+ LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E++E Y I+ +L ++ L I + + K+I Sbjct: 539 KGKQEQYIKDDEAMEQYQISLALDGAALHTNAYAPALAGQALEKLITEHYAVQKIIARME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + + E+ ++E L LN ++ + Sbjct: 599 RRYPRALLNHLIYQPNLLQETLANKETVQQWIDSLVILLNQNEQQGSHYSAIVRENTERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + L++ GV + L+ I S + ++ + G ++ + Sbjct: 659 LFEPLLRTRTHGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLEQDAFVERGGRRLAVDS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + LD + R+G+++QRYKGLGEMN QLWETT++P R +LRV + DA AD LF+ Sbjct: 719 FEAALDWLVKESRRGLTIQRYKGLGEMNPDQLWETTMDPANRRMLRVMVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|315122037|ref|YP_004062526.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495439|gb|ADR52038.1| DNA gyrase subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 802 Score = 937 bits (2421), Expect = 0.0, Method: Composition-based stats. Identities = 695/803 (86%), Positives = 743/803 (92%), Gaps = 1/803 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++NIQNSSY ADSIQILKGLDAVKKRPSMYIGDTD SGLHHM+YEVLDNAIDE+LEGY Sbjct: 1 MNNNIQNSSYSADSIQILKGLDAVKKRPSMYIGDTDDGSGLHHMVYEVLDNAIDEALEGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ADII VTLNMDGSCTVSDNGRGIPTD+HKEEGISA EVIMTRLHAGGKF+Q SYKVSGGL Sbjct: 61 ADIINVTLNMDGSCTVSDNGRGIPTDIHKEEGISATEVIMTRLHAGGKFDQNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSSWLKLRIKREG IYEMSFINGI+D+PLVV G AG DTGTE+TFLP+SD Sbjct: 121 HGVGVSVVNALSSWLKLRIKREGKIYEMSFINGIVDSPLVVVGDAGKDTGTEITFLPNSD 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS+ DF+ D L+HRLRELSFLNS V ISL+DKR +PREI +FY+GGIEAFV YLDRHK Sbjct: 181 IFSIHDFDCDVLKHRLRELSFLNSGVHISLVDKRCSDPREIKLFYEGGIEAFVCYLDRHK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KPL+Q+PIRIQG RD IS+DLAMRWNDGYHENVLCFTNNIPQKDGGTHL+GLRSALTRQI Sbjct: 241 KPLIQNPIRIQGMRDEISVDLAMRWNDGYHENVLCFTNNIPQKDGGTHLAGLRSALTRQI 300 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 TSYVEKSFGSKKDKRSV+GDDCREGFTSVLSIK+ DPRFSSQTKEKLVSSEVRSVVE V Sbjct: 301 TSYVEKSFGSKKDKRSVVGDDCREGFTSVLSIKISDPRFSSQTKEKLVSSEVRSVVEGLV 360 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 DGLS+WLEEHP EAKIIVKKVL+ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER Sbjct: 361 TDGLSSWLEEHPSEAKIIVKKVLEASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA Sbjct: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIGQDSFDI KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI NGFLYIIKPP Sbjct: 481 LGTGIGQDSFDIKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIQNGFLYIIKPP 540 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LYGITRGKSLQYVKDEESLEDYLINQ+LSEEIE I+ NDLR+FIDDALKIDKL Sbjct: 541 LYGITRGKSLQYVKDEESLEDYLINQALSEEIE-LSFGSTKITGNDLRSFIDDALKIDKL 599 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 IK FYP++DK FIEQ VISG+FNCE+ Q+IN LASKLANRLN IAEKSE +++ Sbjct: 600 IKSFYPSYDKIFIEQVVISGIFNCENTQQINEDLASKLANRLNLIAEKSEVWSGSIVDSG 659 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 +ILVKR+ RGVQEQF+L GSSIF+FGS+YKRIFS RIEENYLTI LICNG+KIKI GPC Sbjct: 660 NILVKRVVRGVQEQFILNGSSIFAFGSRYKRIFSKRIEENYLTISHLICNGNKIKIVGPC 719 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 SLLDTIFSIGRKG+SMQRYKGLGEMNASQLW+TTLNP+ RSLLRVKITDASQADD+FSRL Sbjct: 720 SLLDTIFSIGRKGVSMQRYKGLGEMNASQLWDTTLNPEARSLLRVKITDASQADDVFSRL 779 Query: 781 MGDEVEPRREFIQENSLPSALDI 803 MGDEVEPRREFIQENSL + +DI Sbjct: 780 MGDEVEPRREFIQENSLSATIDI 802 >gi|77358986|ref|YP_338561.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis TAC125] gi|76873897|emb|CAI85118.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas haloplanktis TAC125] Length = 808 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 416/815 (51%), Positives = 555/815 (68%), Gaps = 19/815 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+++DGS +V DNGRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CDDIFVTIHLDGSVSVRDNGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+REG ++E ++ +G+ D PL V G A + TGTE+ F PS Sbjct: 116 HGVGVSVVNALSEKLKLTIRREGKLHEQTYSHGVPDAPLAVIGDA-DTTGTELRFWPSDQ 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ DF+YD L RLRELSFLNS V I L D+R E + Y+GGI AFV YL+R+K Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIRAFVEYLNRNK 233 Query: 241 KPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ + D I ++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPIHKGVFHFTHTREEDGIVVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTR 293 Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 + +Y+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V Sbjct: 294 TLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 353 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + + + +L EHP +AKI+V K++DAS R+AAR+AR++TRRKG +D+A LPGKLAD Sbjct: 354 EQAMAEKFTEFLLEHPTDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLAD 413 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG GIG+D ++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G++YI Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +GK +Y+KD+ +L +YL +L+ I L + D Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVEYLTTLALNNATLYTSTDASGIEGEALEKIVHDYQN 593 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKS 649 K+I+ T + + + E D+ ++ +L + L + ++ Sbjct: 594 TVKVIERLKRKFPNTVMNRLIYQSELKKEDLSDEAKVIAWTKELVDDLIDRDEDATIFQA 653 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 N +VK GV + VL I S + + I + Sbjct: 654 ATEHDTERNLYYPVVKIRQHGVDKAHVLHYDFIASRDYQRIAVTGVNIANIITEGAYIQR 713 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L+ + + ++G+ +QRYKGLGEMN SQLWETT++PD R +L+V + D Sbjct: 714 GEKTQPVDNFVDALEWLIAESKRGLYIQRYKGLGEMNPSQLWETTMDPDARRMLQVTVED 773 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 A AD LF+ LMGD+VEPRREFI++N+L LD+ Sbjct: 774 AVAADQLFATLMGDQVEPRREFIEQNALRVVNLDV 808 >gi|85711018|ref|ZP_01042079.1| DNA gyrase subunit B [Idiomarina baltica OS145] gi|85695422|gb|EAQ33359.1| DNA gyrase subunit B [Idiomarina baltica OS145] Length = 806 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 406/813 (49%), Positives = 548/813 (67%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN +Y + SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN----NYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V ++ DGS +V D+GRGIP DLH+EEG+SAA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CTGVDVRIHSDGSVSVRDDGRGIPVDLHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+R+G++YE ++ G + + G + TGTE+ F PS+ Sbjct: 117 HGVGVSVVNALSDKLKLTIRRQGHVYEQTYHLGEPETDVQQIGDT-DQTGTELRFWPSAS 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLRELSFLNS V I L D+R + R+ Y+GGI AFV+YL++ K Sbjct: 176 IFSDTEFHYDILAKRLRELSFLNSGVAIRLSDER--DDRKDEFKYEGGISAFVTYLNKAK 233 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ +P R+ IS++++M+WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIHPNPFHFTSEREEDGISVEVSMQWNDSFQENIYCYTNNIPQRDGGTHLAGFRAALTR 293 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTKEKLVSSEV+S VE Sbjct: 294 TLNSYMEKEGFTKKTKTAATGDDAREGLTAVISVKVPDPKFSSQTKEKLVSSEVKSAVEQ 353 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +N+ L+ +L E+P ++K+IV K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC Sbjct: 354 AMNERLADFLLENPQDSKLIVNKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLI Sbjct: 414 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLI 473 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D +D +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI + Sbjct: 474 TAMGCGIGRDEYDPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQ 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK Y+KD+ +L YL + +L I L N ++ Sbjct: 534 PPLYKVKKGKQETYIKDDPALIRYLTSLALDNASLHPTAEAPGIGGEHLENLVNGYQLAQ 593 Query: 599 KLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKS-----EK 651 + IK + F+++ + + D+ A +L + L S Sbjct: 594 ETIKRLSRRIPEKFLQRLFYAPRLTDDALRDKAYMEEWAQQLNDDLTAREVDSATYTISL 653 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + GV + L + S + I + Sbjct: 654 HEDAERKMWLPTTRIRQHGVDTDYPLNYEFLMSKDYEQIVTVGKEIHALVEEGGYVTRGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + ++ ++ + S ++G+ +QRYKGLGEMN QLWETT++P+TR +L+V I DA Sbjct: 714 KRQPVSHFVEAVEWLISESKRGLYVQRYKGLGEMNPEQLWETTMDPETRRMLQVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFS LMGD+VEPRR FI+ N+L LD+ Sbjct: 774 GADQLFSTLMGDDVEPRRNFIESNALKVANLDV 806 >gi|54292968|ref|YP_125383.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Lens] gi|53752800|emb|CAH14234.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella pneumophila str. Lens] Length = 805 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 408/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+++I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDESL GY Sbjct: 1 MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G +YE + +G+ ++P+ TG A N TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+R+ + T Y+GGI+AFV +L+++K Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 235 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VES V Sbjct: 295 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P AK IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 415 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ L+ G++YI +PP Sbjct: 475 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L DYL +L IS L + +++K+ Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEVPPISAKSLEELVQHFRRVEKI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655 IK + + +++ + + E + +L L + K+E+ Sbjct: 595 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDIQK 654 Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G++ ++ S K +++ + Sbjct: 655 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + +L+ + +KG ++QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 715 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD VEPRR+FI+ N+L + +DI Sbjct: 775 DEIFTTLMGDNVEPRRDFIESNALDAENIDI 805 >gi|319898232|ref|YP_004158325.1| DNA gyrase subunit B [Bartonella clarridgeiae 73] gi|319402196|emb|CBI75727.1| DNA gyrase subunit B [Bartonella clarridgeiae 73] Length = 809 Score = 936 bits (2420), Expect = 0.0, Method: Composition-based stats. Identities = 485/810 (59%), Positives = 613/810 (75%), Gaps = 8/810 (0%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETISPMCGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GYA ++ VTL+ DGSC+V DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+ L + G +++GTE+TFLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRNGKIHEMSFTHGVADSALKIVGDCDSESGTEITFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 SS+ F++ +FN++TL+ RLREL+FLNS + I L D+R + + + + YKGG+ FV ++D Sbjct: 181 SSETFTMVEFNFETLERRLRELAFLNSGIHILLTDQRRADVQSVELHYKGGLVEFVKHID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + K+ L+ +PI I +D IS+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKRALIDNPIYIANEKDGISVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLSAWLEEHP EAKI + KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSAWLEEHPNEAKIFISKVVEAAAAREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGKS QY+K+E + E++LI+ E V + DLR +DA + Sbjct: 541 QPPLYKVSRGKSFQYIKNEAAFEEFLIDAGSEETTLELST-GEVFAGTDLRKLAEDARML 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +++ +EQA I+G+F+ E + E A +ANRLN IA+ E+ W G Sbjct: 600 RQLLNGLHTRYNRNIVEQAAIAGIFSSEAFTTPEKAQKTADNVANRLNLIADDMERGWSG 659 Query: 656 -SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + +RI RGV+E +L+ I S ++ + + E Y L Sbjct: 660 IFTPEGGLCFERILRGVKEVIILDAGLINSADARQIDRIAQNLIEVYSPPPLLHHKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I GP LL++IF G+KG+++QRYKGLGEMNA QLWETTL+PD R+LL+VKI DA+ AD Sbjct: 720 RIFGPIGLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 SLFSRLMGDEVEPRRAFIQDNALSVANLDI 809 >gi|52840260|ref|YP_094059.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627371|gb|AAU26112.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 806 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 408/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+++I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDESL GY Sbjct: 2 MS---VDASYDSNNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 59 CKEIFVTIHSDESITVKDDGRGIPVDIHKEEGKSAAEVIMTVLHAGGKFDDNSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G +YE + +G+ ++P+ TG A N TGT++ F PS++ Sbjct: 119 HGVGVSVVNALSEELHLLVRRHGKVYEQHYRHGVPESPIAETGEA-NSTGTQIWFKPSAE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+R+ + T Y+GGI+AFV +L+++K Sbjct: 178 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERTQKK--DTFHYEGGIKAFVEHLNKNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + +D I I+LAM+WNDGY E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 236 TPVHPVVFSMTSEKDGIVIELAMQWNDGYQETIFCFTNNIPQRDGGTHMAGFRAALTRTL 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VES V Sbjct: 296 NNYIENEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPAVESCV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E+P AK IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 356 AEKFNDFLLENPTAAKSIVAKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 416 DPSLSELYLVEGDSAGGSAKQARDRKFQAILPLKGKILNVEKARFDKMLSSQEVATLITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + +D +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ L+ G++YI +PP Sbjct: 476 LGCGIGPEEYDPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L DYL +L IS L + +++K+ Sbjct: 536 LYKVKRGKQEQYVKDDEALFDYLTQCALDGATFYPAKEVPPISAKSLEELVQHFRRVEKI 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHG--- 655 IK + + +++ + + E + +L L + K+E+ Sbjct: 596 IKRYKRRYPSDILKRVAYMPMLHQEDFNNLPKIENWCRQLHLSLQQVDSKTEQYKVDTQK 655 Query: 656 --SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G++ ++ S K +++ + Sbjct: 656 LTEGNQYTPKITVYQHGLENDIPMQVEFFLSKDYKEMVDLGHKLSNLIEEGAYIQRGDKS 715 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + +L+ + +KG ++QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 716 LPVENFEQVLNWLMDEAKKGQTIQRYKGLGEMNPEQLWETTMDPEVRRMLQVSIEDAVAA 775 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD VEPRR+FI+ N+L + +DI Sbjct: 776 DEIFTTLMGDNVEPRRDFIETNALDAENIDI 806 >gi|268593491|ref|ZP_06127712.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131] gi|291310913|gb|EFE51366.1| DNA gyrase, B subunit [Providencia rettgeri DSM 1131] Length = 804 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 405/806 (50%), Positives = 545/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSISVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E + +G PL V G + TGT V F PS D F V Sbjct: 122 VVNALSEKLELVIRRDGKVHEQIYKHGEPQGPLTVVGET-DQTGTRVRFWPSMDTFKGVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I L+DKR + Y+GGI+AFV YL R+K P+ Sbjct: 181 EFEYDVLAKRLRELSFLNSGVSIKLVDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 S +D I ++++M+WNDG+ ENV CFTNNIPQ+DGGTHL+G R+A+TR + +Y+E Sbjct: 239 SVFYFSTEKDGIGVEVSMQWNDGFQENVYCFTNNIPQRDGGTHLAGFRAAMTRTLNNYME 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK K + GDD REG +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ L Sbjct: 299 KEGYQKKSKVNATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETMMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHIFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 RGK QY+KD+++++DYLI+ +L + +L + + ++I+ Sbjct: 539 RGKQEQYIKDDDAMDDYLISIALDGAELHLSAEAPAMKGEELEKLVVEYNAAHRIIRRLE 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V + + E A L RL + + + Sbjct: 599 RLYPQALLNSLVYQSTLTEDDLKVSEKVEEWAKTLVKRLEDNEQFGSTYSYTINENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ + + + I + + I+ Sbjct: 659 LFEPTIRIRTHGVDTDYNLDFDFVHGSEYRRITHLGDLISGLIEEGAYIKRGERRQDISN 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + R+G+ +QRYKGLGEMN QLWETT+NP+TR ++RV + DA D LF+ Sbjct: 719 FEEALAWLTRESRRGLYVQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|183597169|ref|ZP_02958662.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827] gi|188023483|gb|EDU61523.1| hypothetical protein PROSTU_00412 [Providencia stuartii ATCC 25827] Length = 804 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 406/806 (50%), Positives = 543/806 (67%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I + Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIVI 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I+R+G ++E ++ +G PL V G + TGT V F PS D F V Sbjct: 122 VVNALSEKLELTIRRDGKVHEQTYCHGEPQGPLTVVGET-DQTGTRVRFWPSLDTFKGVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I LIDKR + Y+GGI+AFV YL R+K P+ Sbjct: 181 EFEYDVLAKRLRELSFLNSGVSIRLIDKRDGKE--DHFHYEGGIKAFVEYLSRNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 S +D I +++AM+WNDG+ ENV C+TNNIPQ+DGGTHL+G R+++TR + +Y++ Sbjct: 239 SVFYFSTEKDGIGVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASMTRTLNNYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK K S GDD REG +V+S+K+PDP+FSSQTKEKLVSSEV++ VE+ +N+ Sbjct: 299 KEGYQKKAKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETMMNERFV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++++YLI+ +L + +L + + K+I+ Sbjct: 539 KGKQEQYIKDDDAMDEYLISIALDGAALHLSADAPAMKGEELEKLVVEYNAAHKIIRRLE 598 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + + + V E E L RL + + Sbjct: 599 RLYPQALLNSLVYHSTLTEEALKSSEQVEEWTKGLVQRLEDNEQLGSTYSYTIKENRERQ 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++ GV + L+ + + + I + + + I Sbjct: 659 LFEPTIRIRTHGVDTDYNLDFDFVHGSEYRRITHLGDMIADLIEEGAYIERGERRQNIKN 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + R+G+S+QRYKGLGEMN QLWETT+NPDTR ++RV + DA D LF+ Sbjct: 719 FEEALAWLSRESRRGLSVQRYKGLGEMNPEQLWETTMNPDTRRMMRVTVKDAIATDLLFT 778 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAANIDI 804 >gi|261494473|ref|ZP_05990959.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309857|gb|EEY11074.1| DNA gyrase subunit B [Mannheimia haemolytica serotype A2 str. OVINE] Length = 810 Score = 936 bits (2419), Expect = 0.0, Method: Composition-based stats. Identities = 413/813 (50%), Positives = 550/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL + G+ TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLAIIGNTE-KTGTSVRFWPSLD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I LID+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I +++++ WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLTTEKDGIGVEISLLWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ LS +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALSDYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D +++ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGTGIGRDDYNLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L N I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLYVSEDAPALSGVALENLIAQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSE 650 KLI+ + + + + S + E +Q + + + L + Sbjct: 598 QKLIERLSRRYPTLLLNELIYSKPLSVEFAKNQANMTAWSEQFVATLMAKEVGGSFYRIN 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I N + + ++ Sbjct: 658 TLFNEERQIYEPEIIVTTHGMDSTYRLDYNFINGNEYARIVALGNELNDLLSDSAYVVRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + +I+ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERRQEISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIETNALYAQLDI 810 >gi|157959834|ref|YP_001499868.1| DNA gyrase subunit B [Shewanella pealeana ATCC 700345] gi|157844834|gb|ABV85333.1| DNA gyrase, B subunit [Shewanella pealeana ATCC 700345] Length = 813 Score = 935 bits (2417), Expect = 0.0, Method: Composition-based stats. Identities = 396/810 (48%), Positives = 547/810 (67%), Gaps = 12/810 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N+ +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + Sbjct: 7 NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +T++ DGS +V D+GRGIP +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHG Sbjct: 67 DVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L++ I+R+G +YE + +G+ D P+ G A TGTE+ F PS++ F Sbjct: 127 VGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEAT-KTGTEIRFWPSTETF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + F++D L R+RELSFLNS V I L+D+R + R+ Y+GGI AFV YL+ +K P Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTP 243 Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 244 VNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y+E+ +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + Sbjct: 304 NYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L +L EHP EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+D Sbjct: 364 EQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL Sbjct: 424 PGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D ++ +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL Sbjct: 484 GCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPL 543 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD+ +L +YL Q+L +S L ++ +++ +I Sbjct: 544 YKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVEAII 603 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-------EKSWH 654 + + + E + A + I +++ E Sbjct: 604 ARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWADVFVADLIDKETGGILYSAEPVLD 663 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + G+ ++ S + + I + Sbjct: 664 PERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGERTK 723 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +T LD + + ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD Sbjct: 724 DVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGAD 783 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 784 QLFTCLMGDQVEPRRDFIEANALNVANLDV 813 >gi|119471661|ref|ZP_01614046.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales bacterium TW-7] gi|119445440|gb|EAW26727.1| DNA gyrase, subunit B (type II topoisomerase) [Alteromonadales bacterium TW-7] Length = 808 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 410/815 (50%), Positives = 557/815 (68%), Gaps = 19/815 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+++DGS +V DNGRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CDDIFVTIHLDGSVSVRDNGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL ++REG ++E + G+ D PL V G + TGTE+ F PS++ Sbjct: 116 HGVGVSVVNALSEKLKLTVRREGKLHEQFYTMGVPDAPLAVIGDSE-TTGTELRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ DF+YD L RLRELSFLNS V I L D+R E + Y+GGI+AFV Y++R+K Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILNDER-EENKSDHFKYEGGIQAFVEYINRNK 233 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ + R IS++++M+WND Y EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPIHKGVFHFTHERVEDGISVEVSMQWNDAYQENIYCFTNNIPQRDGGTHLAGFRSALTR 293 Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 + +++EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V Sbjct: 294 TLNNFMEKEGFNKKAKTTSNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAV 353 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + + + +L E+P++AKI+V K++DAS R+AAR+AR++TRRKG +D+A LPGKLAD Sbjct: 354 EQAMAEKFTEFLLENPVDAKIVVGKIIDASRAREAARKAREMTRRKGAMDLAGLPGKLAD 413 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG GIG+D ++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G++YI Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +GK +Y+KD+ +L +YL + +L+ + L + D Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVEYLTSLALNNAALYTSADASALEGEALEKIVHDYQN 593 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKS 649 K+I+ + T +E+ + E D+ ++ +L + L + + Sbjct: 594 TVKVIERLKRKYPNTVMERLIYQSELTKEDLADEAKVIAWTKELVDDLVDRDEDATIFNA 653 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + N +V GV + VL I S + + I + Sbjct: 654 ATKYDAERNLYYPVVNIRQHGVDKSHVLSYDFITSRDYQRIAVTGVNIANIITEGAYIQR 713 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L+ + + ++GI +QRYKGLGEMN +QLWETT++PD R +L+V I D Sbjct: 714 GEKTKPVDNFVDALEWLITESKRGIYIQRYKGLGEMNPNQLWETTMDPDARRMLQVTIED 773 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 A AD LF+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 774 AVGADQLFATLMGDQVEPRRDFIETNALRVVNLDV 808 >gi|294675561|ref|YP_003576176.1| DNA gyrase subunit B [Rhodobacter capsulatus SB 1003] gi|294474381|gb|ADE83769.1| DNA gyrase, B subunit [Rhodobacter capsulatus SB 1003] Length = 816 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 447/816 (54%), Positives = 581/816 (71%), Gaps = 15/816 (1%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ +N Y A+SI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G Sbjct: 1 MTETPKNKAEYGAESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-----KSY 114 +A+ + V ++ D S +V DNGRGIP D+H EEG+SAAEVIMT+LHAGGKFN +Y Sbjct: 61 HANYVAVKIHADSSVSVRDNGRGIPVDIHPEEGVSAAEVIMTQLHAGGKFNNTDEGGNAY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS WL+L++ R +Y F G + G A + GTEV Sbjct: 121 KVSGGLHGVGVSVVNALSDWLELKVWRNDKVYFARFEKGDCVVHVHEIGEAPGEKGTEVR 180 Query: 175 FLPSSDI------FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 F+ S+ FS D+ + TL+ RLREL+FLNS V+I L D+R EP + Y+GG Sbjct: 181 FMASAKTTDPEGTFSNLDYVFKTLETRLRELAFLNSGVRIILEDERPAEPLRSELHYEGG 240 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 + FV YLDR K +M PI + G I +++AM WND YHE VL FTNNIPQ+DGGTH Sbjct: 241 VREFVKYLDRSKTAVMPDPIYMVGEVRGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTH 300 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 L+G R ALTR IT Y + S +K++K GDD REG T VLS+K+PDP+FSSQTK+KLV Sbjct: 301 LAGFRGALTRTITKYAQDSGIAKREKIDFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLV 360 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 SSEVR VE+ VN+ L+ W EEHP EAK IV K+++A++ R+AAR+AR+LTRRK +D+A Sbjct: 361 SSEVRPAVENLVNEKLAEWFEEHPTEAKGIVGKIIEAALAREAARKARELTRRKTAMDVA 420 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADC E+DP SE+FLVEGDSAGGSAKQGR R+NQA+LPLRGKILNVERARFD+M Sbjct: 421 SLPGKLADCQEKDPALSEVFLVEGDSAGGSAKQGRERKNQAVLPLRGKILNVERARFDRM 480 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 LSS +IGTLITALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP L Sbjct: 481 LSSDQIGTLITALGTGIGRDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPEL 540 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 I +G+LYI +PPLY + RGKS Y+KD+ +LEDYL++Q + I D +I DL Sbjct: 541 IEHGYLYIAQPPLYKVARGKSEVYLKDQAALEDYLVHQGVEGAILRLGDGTDII-GADLT 599 Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 +++A ++ ++++ F ++ + +EQA I+G +A +L+ RL+ IA + Sbjct: 600 RLVEEARQVRRILQAFPTHYPQRILEQAAIAGALLPGRIDADAQGVADELSARLDLIALE 659 Query: 649 SEKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 E+ W G + + + RI RGV+E L+G + S ++ F+ ++E+Y L Sbjct: 660 YERGWMGRPTQDHGLRMSRILRGVEEVRTLDGPVLRSGEARRLSQFTTSLQESYRAPARL 719 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I + I GP LL I G KG+++QRYKGLGEMN QLWETTL+P R+LL+V++ Sbjct: 720 IRKDREQFIHGPLDLLTAILQEGEKGLTLQRYKGLGEMNPEQLWETTLDPAARTLLQVRV 779 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D ++A+D+FS+LMGD VEPRREFIQ+N+L LD Sbjct: 780 DDVAEAEDIFSKLMGDVVEPRREFIQQNALSVENLD 815 >gi|319404951|emb|CBI78553.1| DNA gyrase subunit B [Bartonella sp. AR 15-3] Length = 809 Score = 935 bits (2416), Expect = 0.0, Method: Composition-based stats. Identities = 486/810 (60%), Positives = 618/810 (76%), Gaps = 8/810 (0%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MSDETTSPMCGDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GYA ++ VTL+ DGSC+V DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYATLVNVTLHADGSCSVHDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRIKR+G I+EMSF +G+ D+ L + G+ +++GTE+TFLP Sbjct: 121 GGLHGVGVSVVNALSVWLRLRIKRDGKIHEMSFTHGVADSALKIIGNCDSESGTEITFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 SS+ F++ +FN++TL+ RLREL+FLNS + I L D+R + + + + Y+GG+ FV Y+D Sbjct: 181 SSETFTMVEFNFETLERRLRELAFLNSGIHILLTDQRRADVQSVELHYEGGLIEFVKYID 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + KK L+ +PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALT Sbjct: 241 QSKKALIDNPIYITNEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRSALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQI Y E S +KK+K S+ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +VE Sbjct: 301 RQINGYAESSGIAKKEKVSLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + VN+GLSAWLEEHP EAKI++ KV++A+ VR+AAR+AR+LTRRKG LDI SLPGKLADC Sbjct: 361 NLVNEGLSAWLEEHPNEAKILISKVVEAAAVREAARKARELTRRKGALDITSLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS+ IGTL Sbjct: 421 QERDPTKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGT IG+D F +K+RYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI Sbjct: 481 ITALGTSIGKDEFSPDKVRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++RGK QY+K+E + E++LI+ L E + + DLR +DA + Sbjct: 541 QPPLYKVSRGKFSQYIKNEAAFEEFLIDSGLEETTLELST-GEIFAGTDLRKLAEDARML 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +L+ + +D+ +EQA I+G+F+ E + E +A +ANRL+ IA+ E+ W G Sbjct: 600 RQLLNGLHTRYDRNIVEQAAIAGIFSFEAFTTPEKAQEIADNVANRLDLIADDMERGWKG 659 Query: 656 S-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + +RI RGV+E L+ I S ++ + + E Y L Sbjct: 660 ICTPEGGLYFERILRGVKEIITLDAGLINSSDARQIDRIAQNLIEVYSFPPLLHRKDKSE 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I GP LL++IF G+KG+++QRYKGLGEMNA QLWETTL+PD R+LL+VKI DA+ AD Sbjct: 720 RIFGPIGLLESIFKNGKKGLTLQRYKGLGEMNADQLWETTLDPDARTLLQVKINDATDAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 SLFSRLMGDEVEPRRSFIQDNALSVANLDI 809 >gi|167621945|ref|YP_001672239.1| DNA gyrase subunit B [Shewanella halifaxensis HAW-EB4] gi|167351967|gb|ABZ74580.1| DNA gyrase, B subunit [Shewanella halifaxensis HAW-EB4] Length = 813 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 397/810 (49%), Positives = 546/810 (67%), Gaps = 12/810 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N+ +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + Sbjct: 7 NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +T++ DGS +V D+GRGIP +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHG Sbjct: 67 DVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L++ I+R+G +YE + +G+ D P+ G A TGTE+ F PS++ F Sbjct: 127 VGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEAT-KTGTEIRFWPSTETF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + F++D L R+RELSFLNS V I L+D+R + R+ Y+GGI AFV YL+ +K P Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTP 243 Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 244 VNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y+E+ +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + Sbjct: 304 NYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L +L EHP EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+D Sbjct: 364 EQLGDYLMEHPNEAKMIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL Sbjct: 424 PGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D ++ +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL Sbjct: 484 GCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPL 543 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD+ +L +YL Q+L +S L ++ +++ +I Sbjct: 544 YKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVESVI 603 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-------EKSWH 654 + + + E + A + I ++S E Sbjct: 604 ARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWTDVFVADLIDKESGGILYSAEPVLD 663 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + G+ ++ S + I + Sbjct: 664 PERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGAEINGMVEASGYVQRGERTK 723 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +T LD + + ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD Sbjct: 724 DVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGAD 783 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 784 QLFTCLMGDQVEPRRDFIEANALNVANLDV 813 >gi|113968350|ref|YP_732143.1| DNA gyrase subunit B [Shewanella sp. MR-4] gi|113883034|gb|ABI37086.1| DNA gyrase subunit B [Shewanella sp. MR-4] Length = 805 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG ++E + +G+ D P+ V G A TGTE+ F PS + FS Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + + + + N E D+ + L + E Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + +E + ++ Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGDRVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805 >gi|114045517|ref|YP_736067.1| DNA gyrase subunit B [Shewanella sp. MR-7] gi|113886959|gb|ABI41010.1| DNA gyrase subunit B [Shewanella sp. MR-7] Length = 805 Score = 934 bits (2415), Expect = 0.0, Method: Composition-based stats. Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG ++E + +G+ D P+ V G A TGTE+ F PS + FS Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + + + + N E D+ + L + E Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + +E + ++ Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGERVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805 >gi|24371611|ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1] gi|24345361|gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1] Length = 805 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 395/808 (48%), Positives = 541/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+R+G ++E + +G+ D P+ G A TGTE+ F PS FS Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEQTFSN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y Sbjct: 238 KDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + + + + + + D+ + L + E Sbjct: 598 LEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVELENSGVLYSGEPVLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + +E + ++ Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEGLIEVGGYVQRGDRVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD S ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805 >gi|240849719|ref|YP_002971107.1| DNA gyrase subunit B [Bartonella grahamii as4aup] gi|240266842|gb|ACS50430.1| DNA gyrase subunit B [Bartonella grahamii as4aup] Length = 810 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 487/811 (60%), Positives = 613/811 (75%), Gaps = 9/811 (1%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD I Q+ Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+ Sbjct: 1 MSDEITSAAQSDDYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A ++ VTL+ DGSC+V DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKV Sbjct: 61 LAGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS WLKL+I+R G I+E+SF +G+ D PL V G ++GTE+ FL Sbjct: 121 SGGLHGVGVSVVNALSVWLKLQIRRNGKIHEISFTHGVADAPLKVIGDCDKESGTEIRFL 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R + + + + Y+GG+ FV Y+ Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVYILLVDERHADTKSVELHYEGGLTEFVKYI 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D+ KK L+ +PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL Sbjct: 241 DQSKKALLDNPIYIASEKDGMSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLIGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRQINGYAESSGIAKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ VN+GLS WLEEHP EAK+++ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLAD Sbjct: 361 ENLVNEGLSVWLEEHPHEAKLLISKVVEAATAREAARKARELTRRKGALDITSLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS IGT Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY ++RGKS QY+K+E + E++LI+ L E V + DL DA Sbjct: 541 AQPPLYKVSRGKSSQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLYQLAKDARI 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654 + +L+ + +D+ +EQA I G FN E QE +A +A+RLN IA+ E+ W Sbjct: 600 LRQLLDGLHTRYDRNIVEQAAIVGAFNLEVFATQEKAQKIADTIAHRLNLIADDMEQGWS 659 Query: 655 GSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 G + ++ +RI RGV++ L+ I S ++ S + Y + L Sbjct: 660 GQYTADGNLCFERILRGVKDVVTLDVGLINSTDARQIDRISQNFIDIYHPPVLLRRKDKT 719 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +I GP SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTL+P+ RSLL+VKI DA+ A Sbjct: 720 ERIFGPMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLDPNARSLLQVKINDATDA 779 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 DSLFSRLMGDEVEPRRIFIQDNALSVANLDI 810 >gi|219870586|ref|YP_002474961.1| DNA gyrase subunit B [Haemophilus parasuis SH0165] gi|219690790|gb|ACL32013.1| DNA gyrase subunit B [Haemophilus parasuis SH0165] Length = 810 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 407/813 (50%), Positives = 541/813 (66%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CNDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL V G TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETE-KTGTTVRFWPSYD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I L+D+R+ + Y+GGI A+V YL+ Sbjct: 180 IFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE--EHFKYEGGIRAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I I+++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KNVIHPTPFYLSTEKDGIGIEISMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVE--KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y+E + K GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR+ +E Sbjct: 298 LKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRNPLE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L +L E+P +A+ IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI G++YI Sbjct: 478 ITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D +E Y + +L D ++ L I + + Sbjct: 538 QPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLYVSDKAPALNGLALEKLIAEYNDV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKS-----E 650 KL + + + + + E + + +K+ L E Sbjct: 598 QKLFERLARRYPTALLNELIYQPALTTEFVKNETEVTAWNNKIVEILTAKETSGSTYVAE 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + V G+ + L+ + I S ++ + + Sbjct: 658 VFYNAERHIYEPQVIVTTHGISTTYCLDFNFITSNEYTRITKLGEQVSDLLEPTAYVQRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + I +D + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERQQSIESVAEAIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVTITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFTTLMGDEVEPRRDFIENNALYANLDI 810 >gi|167856132|ref|ZP_02478872.1| DNA gyrase subunit B [Haemophilus parasuis 29755] gi|167852728|gb|EDS24002.1| DNA gyrase subunit B [Haemophilus parasuis 29755] Length = 810 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 407/813 (50%), Positives = 542/813 (66%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEQNQPNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CNDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G D PL V G TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGDPDAPLAVIGETE-KTGTTVRFWPSYD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I L+D+R+ + Y+GGI A+V YL+ Sbjct: 180 IFKNKTEFEYAILSKRLRELSFLNSGVSIRLVDERNDKE--EHFKYEGGIRAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D+I I+++M+WND ++ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KNVIHPTPFYLSTEKDDIGIEISMQWNDSFNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVE--KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y+E + K GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR+ +E Sbjct: 298 LKNYMETGAKLKKEDAKIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRNPLE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L +L E+P +A+ IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 358 SSMNEALQEYLLENPNDAQNIVTKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI G++YI Sbjct: 478 ITALGAGIGRDEYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D +E Y + +L D ++ L I + + Sbjct: 538 QPPLYKVKKGKQEKYIQDNTEMEQYELALALDGASLYVSDKAPALNGLALEKLIAEYNDV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKS-----E 650 KL + + + + + E + + +K+ L E Sbjct: 598 QKLFERLARRYPTALLNELIYQPALTTEFVKNETEVTAWNNKIVEILTAKETSGSTYVAE 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + V G+ + L+ + I S ++ + + Sbjct: 658 VFYNAERHIYEPQVIVTTHGISTTYCLDFNFITSNEYTRITKLGEQVSDLLEPTAYVQRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + I +D + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERQQSIESVAEAIDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVTITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFTTLMGDEVEPRRDFIENNALYANLDI 810 >gi|212632928|ref|YP_002309453.1| DNA gyrase subunit B [Shewanella piezotolerans WP3] gi|212554412|gb|ACJ26866.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3] Length = 805 Score = 934 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 397/808 (49%), Positives = 537/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T++ DGS +V+D+GRGIP ++H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHADGSVSVTDDGRGIPVEIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+R+G +YE + G + P+ G A TGT + F PS + FS Sbjct: 121 VSVVNALSHKLQLTIRRDGKVYEQFYTMGEPNEPIKPVGEAT-STGTVIRFWPSEETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++D L R+RELSFLNS V I L+D+R + R+ Y+GGI AFV YL+ +K P+ Sbjct: 180 VLFHFDILAKRVRELSFLNSGVGIRLVDER--DNRDEFFKYEGGISAFVDYLNVNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y Sbjct: 238 KEVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E+ +KK K GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 298 MEREGFNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L EHP EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 478 GIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+ +L +YL Q+L +S L ++ +++ +I+ Sbjct: 538 VKKGKQEQYLKDDPALTEYLTTQALDNANVYPAQGAPGMSGLPLERLVNQYREVEAIIER 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINV-------SLASKLANRLNFIAEKSEKSWHGS 656 + + + E + +A+ I +E Sbjct: 598 LEQRYPTNITDLMLYHPALTNEMLSDEAQVKVWSDTFVAALAEKETGGILYSAEPVLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ F+ S I + + Sbjct: 658 RQVYLPKITIRKHGIDTHFLFTYDFFQSNDYATIVNLGAEINGLIEDTGYVQRGERTKDV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + LD + S ++G +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 SSFVEALDWLMSESKRGQYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRRDFIESNALNVANLDV 805 >gi|332991512|gb|AEF01567.1| DNA gyrase subunit B [Alteromonas sp. SN2] Length = 806 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 414/812 (50%), Positives = 556/812 (68%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEQ---NNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEIVVQIHTDGSVSVYDDGRGIPTAVHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS LKLRI+REG +E + +G+ PL V G + TGT V F PSSD Sbjct: 118 HGVGVSVVNALSSKLKLRIRREGKTHEQEYQHGVPQAPLAVIGET-DKTGTSVRFWPSSD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F+YD L RLRELSFLNS + I L D+R + Y+GGI+AFV YL++ K Sbjct: 177 TFTNTLFHYDILAKRLRELSFLNSGISIRLKDERDGKE--DHFMYEGGIKAFVEYLNQKK 234 Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q D IS++++M+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TPVHQKVFHFTHEQEDGISVEVSMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VES Sbjct: 295 LNNYMEKEGMNKKAKTNTSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKTAVESA 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ +L E+P E++II K++DA+ RDAAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 355 MNEKLAEFLLENPAESRIIAGKIIDAARARDAARKAREMTRRKGALDLAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +P Sbjct: 475 ALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+++L YL + ++ D IS L + +K Sbjct: 535 PLYKVKKGKQEQYLKDDDALTAYLTSIAIDGSSLHTSDDDPGISGVALEQLVTLYQSAEK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQE------INVSLASKLANRLNFIAE-KSEKS 652 +I + + + + + N E ++ + ++L R N A + E Sbjct: 595 MITRMKRLMPSSILYRMIYTPTLNLEDLKDESTLANVAEHFVAQLTERENDGATYRYEIR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ I + G+ ++V+ I S + + + I + + Sbjct: 655 RDIELSEFYITIIMRMHGIDYEYVIGHDFIESTEYQRLKELNLAINDMMSANAFIQRGDR 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K+ + LD + S ++G +QRYKGLGEMN SQLWETT++P+ R +L+VKI DA Sbjct: 715 KMPVESFKEALDWLMSEAKRGQYIQRYKGLGEMNPSQLWETTMDPEGRRMLQVKIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LF+ LMGD+VEPRR FI+ N+L LD+ Sbjct: 775 CDQLFTTLMGDQVEPRRNFIEANALRVENLDV 806 >gi|56459116|ref|YP_154397.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR] gi|56178126|gb|AAV80848.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR] Length = 805 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 399/808 (49%), Positives = 548/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ ++Y + SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MEENNYGSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ DGS +V D+GRGIP D+H+EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 MVTIHSDGSVSVKDDGRGIPVDIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS L+L I+R+G +YE ++ G D+ + G + TGTE+ F PS + F+ Sbjct: 121 ISVVNALSEKLQLTIRRQGQVYEQTYHMGEPDSDVKPVGDT-DTTGTELRFWPSHETFTD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+YD L RLRELSFLNS V I L D+R + RE Y+GGI AFV+YL+++K P+ Sbjct: 180 TEFHYDILAKRLRELSFLNSGVGIRLRDER--DDREDLFKYEGGIAAFVNYLNKNKTPIH 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I ++++M+WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+ Sbjct: 238 EKAFYFTTQREDGIGVEVSMQWNDSFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNSH 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +EK +KK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ Sbjct: 298 MEKEGYNKKSKTSATGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMNEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P EAK+I+ K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+DP Sbjct: 358 LADYLLENPGEAKLIINKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+GTLITA+G Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSVEVGTLITAMGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +PPLY Sbjct: 478 GIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK Y+KD+ +L YL + +L ++ IS L N ++ + IK Sbjct: 538 VKKGKQEVYIKDDPALIRYLTSLALDNASLHVNETAPGISGEKLENLVNGYQMAQENIKR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRL-----NFIAEKSEKSWHGS 656 + F+++ + E ++ + L + L N Sbjct: 598 LSRRMPERFLQRLFYAPRLTDERLKDKDYMEKWVKTLNDDLTAREINSATYTVSLHEDTE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 GV + L + S + I+ ++ K + Sbjct: 658 RKMWLPSTTIRQHGVDTDYPLNYEFLMSKDYEQIVTLGEEIDSLVEPDGYVLRGEKKQPV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 T ++ + ++G+ +QRYKGLGEMN QLWETT++PDTR +L+V I DA AD L Sbjct: 718 THFVEAVEWLIGESKRGLYVQRYKGLGEMNPDQLWETTMDPDTRRMLQVTIEDAIGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 778 FTTLMGDEVEPRRAFIESNALKVANLDV 805 >gi|120552949|ref|YP_957300.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8] gi|120322798|gb|ABM17113.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8] Length = 804 Score = 933 bits (2411), Expect = 0.0, Method: Composition-based stats. Identities = 396/807 (49%), Positives = 532/807 (65%), Gaps = 11/807 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y++ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L GY I Sbjct: 1 MSESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + ++ D S TV DNGRGIP DLH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 GIIIHPDESITVKDNGRGIPVDLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L L I+R+G +YE S+ +G+ + PL G + +GT+V F+PS + F+ Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQSYTHGVPNAPLGEVGET-DASGTKVHFIPSPETFTH 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLREL+FLNS V+I L D+RS + Y+GG+ AFV +L+ +K + Sbjct: 180 IQFHYDILAKRLRELAFLNSGVRIRLTDERSGKE--EIFEYEGGLRAFVEHLNTNKTAIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + D I++++AM+WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+ Sbjct: 238 RVFHFNREREDGIAVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 DHEGLGKKAKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L+E P EAK IV K+++A+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP Sbjct: 358 AEYLQEQPNEAKQIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G Sbjct: 418 SELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F+ +KLRYH IIIMTDADVDG+HIRTLLLTF FRQM +I G ++I PPLY + Sbjct: 478 IGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKV 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK QY+KDE++ E YL +L I + L + D + +I Sbjct: 538 KRGKQEQYLKDEKAKEAYLTQSALEGAQLYVNPEAPAIKDSALETMVKDYQAVMAMIDRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK-----SWHGSI 657 + ++Q V + E +E ++L L+ K + Sbjct: 598 SRAYPAKVLQQMVYNSTLKPEHLKEEAEVARWVARLGEGLDLDTRTGTKYTFSVTRDEER 657 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 V G+ + V S +E + K + Sbjct: 658 GLYLPKVTIFVHGIPHEHVFSHDFFESSSYGAIARLGETLEGLIEDGAYIQRGERKQSVL 717 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + ++G+++QRYKGLGEMN QLWETT++P+TR +++V I DA AD +F Sbjct: 718 SFEGALEWLMKEAQRGLNIQRYKGLGEMNPDQLWETTMDPETRRMMKVTIEDAIAADQIF 777 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR+FIQ N+L LDI Sbjct: 778 TTLMGDDVEPRRDFIQSNALEVTNLDI 804 >gi|114561192|ref|YP_748705.1| DNA gyrase, B subunit [Shewanella frigidimarina NCIMB 400] gi|114332485|gb|ABI69867.1| DNA gyrase subunit B [Shewanella frigidimarina NCIMB 400] Length = 805 Score = 932 bits (2410), Expect = 0.0, Method: Composition-based stats. Identities = 405/812 (49%), Positives = 547/812 (67%), Gaps = 20/812 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T++++ DGS +V D+GRGIP +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TISIHSDGSVSVKDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+R G +YE + +G+ D P+ G A TGTE+ F PSSD F+ Sbjct: 121 VSVVNALSQKLQLTIRRAGKVYEQFYTHGVPDAPIKEIGDA-VKTGTELRFWPSSDTFTD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDGKD--EFFKYEGGISAFVDYLNRNKTPIN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y Sbjct: 238 KDVFHFSHEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E+ +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 298 MEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIQRGYIYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L +YL Q+L +S L + +++++IK Sbjct: 538 VKKGKQEQYLKDEPALTEYLTTQALDGTNIYPSPGAFGMSGEPLERLVAQYREVERIIKR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG-------- 655 + +++ + E + A FIA+ E+ G Sbjct: 598 LEKRYPTNLLDRMLYHP----EVTAAVLSDEAQMTEWCNGFIADLVERESSGIIFTANVM 653 Query: 656 ---SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G+ ++ S + +E + Sbjct: 654 LDPERKVYTPSVTIRKHGIDTNYLFGYDFFTSSDYQRIAKLGAALEGMIEEGGYVQRGER 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ LD S ++G+ +QRYKGLGEMN QLWETT++P++R +LRV I DA Sbjct: 714 VKEVESFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLRVTIEDAVA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 774 ADQLFTCLMGDQVEPRREFIETNALNVANLDV 805 >gi|117918471|ref|YP_867663.1| DNA gyrase subunit B [Shewanella sp. ANA-3] gi|117610803|gb|ABK46257.1| DNA gyrase subunit B [Shewanella sp. ANA-3] Length = 805 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 397/808 (49%), Positives = 543/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+REG ++E + +G+ D P+ V G A TGTE+ F PS + FS Sbjct: 121 VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDAT-KTGTEIRFWPSEETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + RD+ I++++AM+WNDGY E++ CFTNNIPQ+DGGTHL+G RSALTR + +Y Sbjct: 238 KDVFHFMQERDDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES------DQEINVSLASKLANRLNF-IAEKSEKSWHGS 656 + + + + N E +E + +L N + E Sbjct: 598 LEQRYPTQITNRMLYHPMINNEMLADEGKMKECIDAFIHELVELENSGVLYSGEPVLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + +E + ++ Sbjct: 658 RKVYLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGDRVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFIEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRRDFIEANALNVANLDV 805 >gi|322514536|ref|ZP_08067569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae ATCC 25976] gi|322119475|gb|EFX91562.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinobacillus ureae ATCC 25976] Length = 810 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 411/813 (50%), Positives = 552/813 (67%), Gaps = 13/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q +SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEQNQTNSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 61 CKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG++YE + G D PL + G + TGT V F PS D Sbjct: 121 HGVGVSVVNALSSKLQLTIRREGHVYEQFYSLGEPDAPLTIIGDT-DKTGTMVRFWPSLD 179 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I L+D+R + Y+GGI+A+V YL+ Sbjct: 180 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 238 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRGALTRA 297 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 298 LKNYMDNSGVVKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L+ +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ L GKLADC Sbjct: 358 SSMNEALAEYLAENPDDAKNIVTKIIDAARAREAARKAREMTRRKGALDLGGLLGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 418 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 478 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L + I + Sbjct: 538 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVIEGAPALSGVALESLISQYNGV 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAE-----KSE 650 KL + + + + S + E ++ + + +L +SE Sbjct: 598 QKLFDRLSRRYPVALLNELIYSPALSAEFAKDQAKVTAWNKQFVAKLMEKETGGSFYRSE 657 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I S N++ + ++ Sbjct: 658 VFFNTERQVYEPEIVVTTHGMDTTYRLDFNFISSNEYAKITALGNQLNDLLSPSAYVMRG 717 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + +++ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 718 ERRQEVSSFAEALDWLVRESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 777 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 810 >gi|158422633|ref|YP_001523925.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571] gi|158329522|dbj|BAF87007.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571] Length = 808 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 468/809 (57%), Positives = 597/809 (73%), Gaps = 7/809 (0%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + Y A SIQ+LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MAEPMPAASPEEYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A +TVTLN DGS TV+D+GRGIPT +H+EEG+SAAEVIMT+LHAGGKFNQ SYKVS Sbjct: 61 AGHAKEVTVTLNADGSVTVTDDGRGIPTGIHEEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFL 176 GGLHGVGVSVVNALS++L L I R+G + M F +G + PL V G A GT+VTFL Sbjct: 121 GGLHGVGVSVVNALSTYLDLTIWRDGKEHYMRFRHGDAEAPLKVVGDAPAGKRGTKVTFL 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS + F+ +F+Y TL+HRLREL+FLNS V I+L D R PEP+ + Y+GG+EAFV YL Sbjct: 181 PSPETFTKIEFDYATLEHRLRELAFLNSGVLITLTDARGPEPKREELHYEGGVEAFVRYL 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K+ L+Q P+ I+ RD I+++ A+ WNDGYHEN+LCFTNNIPQ+D GTH +G +AL Sbjct: 241 DRSKQALLQKPVVIRAERDGITVEAALSWNDGYHENILCFTNNIPQRDRGTHFTGFAAAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQ+ Y ++S +KK+K G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRQVIGYADRSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V D LS W EE+P E K +V KV++A+ R+AARRARDLTRRK LD+ASLPGKLAD Sbjct: 361 ESLVGDALSTWFEENPNEGKSVVGKVVEAAAAREAARRARDLTRRKNPLDVASLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAKQGR R QA+LPLRGKILNVERARFDKMLSS +IGT Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGTGIG+D FDI KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP ++ G +YI Sbjct: 481 LITALGTGIGRDDFDIAKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVLERGHIYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPL+ + RGKS Y+KDE++LEDYLI L + S V + DL +D Sbjct: 541 AQPPLFKVARGKSETYIKDEKALEDYLITAGLEDAALH-AASGEVRTGADLAAVVDVTRH 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + + +P ++++ EQA +G D + A ++A RLN +AE++E++W Sbjct: 600 MRGTLLNLHPRYNRSVAEQAAFAGALVPGILDDDATATAAAQRIAARLNILAEETERTWE 659 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 G+ +++ I + R RGV E VL+ I S ++ + +++ + L ++ Sbjct: 660 GAADDTGIRLTRSVRGVLETSVLDNGFIASPEARRLDSLARQLDGIFTGPSLLRRKSEEH 719 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + G L D I GRKG+S+QRYKGLGEMN QLWETTL+ + RSLL+VK+ + AD Sbjct: 720 SVFGAVDLFDAITDAGRKGLSLQRYKGLGEMNPEQLWETTLDINARSLLQVKVKEVDAAD 779 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 DLF+RLMGD VEPRR+FIQEN+L +++D+ Sbjct: 780 DLFNRLMGDVVEPRRDFIQENALKASVDV 808 >gi|310817257|ref|YP_003965221.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25] gi|308755992|gb|ADO43921.1| DNA gyrase, B subunit [Ketogulonicigenium vulgare Y25] Length = 816 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 437/816 (53%), Positives = 573/816 (70%), Gaps = 15/816 (1%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ Q Y ADSI++L+GLDAV+KRP MYIGDTD SGLHHMIYEV+DN IDE+L G Sbjct: 1 MSEPKPQPGDYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-----KSY 114 +A + V ++ D S +V DNGRGIP +H EEG+SAAEVIMT+LHAGGKFN +Y Sbjct: 61 HATSVYVKIHADSSVSVRDNGRGIPVGIHAEEGVSAAEVIMTQLHAGGKFNNTDESGNAY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS WL+LRI R+G+ Y F +G + + G + + GTEV Sbjct: 121 KVSGGLHGVGVSVVNALSEWLELRIWRDGHEYHARFEHGNVVQHVKDLGPSDGERGTEVR 180 Query: 175 F------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 F + FS +++YD L+ RLREL+FLNS V+I L D+R +P + ++Y GG Sbjct: 181 FLAAVRVAANEGTFSNLEYSYDVLERRLRELAFLNSGVRIVLEDERPAQPLKTELYYDGG 240 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 + FV YLDR K +M PI + G R I +++AM WND YHENVL FTNNIPQ+DGGTH Sbjct: 241 VREFVKYLDRSKTAIMPEPIFMVGERAGIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTH 300 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 ++G R+ALTR IT Y + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLV Sbjct: 301 IAGFRAALTRTITKYAQDSGIAKKEKIDLTGDDAREGMTCVLSVKVPDPKFSSQTKDKLV 360 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 SSEVR VE+ V + L+ W EE+P A++IV K+++A+ R+AAR+AR+LTRRK LD+ Sbjct: 361 SSEVRPAVENLVGEKLAEWFEENPQMARMIVGKIIEAAQAREAARKARELTRRKSALDVN 420 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 + GKL DC+E+DP K+ELF+VEGDSAGGSA+ GR R QAILPLRGKILNVERARFD+M Sbjct: 421 FMAGKLKDCAEKDPSKTELFIVEGDSAGGSAQMGRDRLTQAILPLRGKILNVERARFDRM 480 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 LSS EIG L+ ALGTGIG+D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP L Sbjct: 481 LSSAEIGNLVMALGTGIGRDEFNLAKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPQL 540 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 I G +YI +PPLY ++RGKS Y+KD+ + ++YLI Q + + ++ DL Sbjct: 541 IEAGHVYIAQPPLYKVSRGKSEVYLKDQAAYDEYLIQQGADATVLKLGNGME-LAGADLL 599 Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 I++A ++ +++ F ++ + +EQA I+G F +A ++A RL+ IA + Sbjct: 600 RVIEEARQLRRVLDAFPTSYQRHILEQAAIAGAFVPGVVDSDLQGVADRVATRLDLIAAE 659 Query: 649 SEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 E+ W G I + I + RI RGV+E L+G + S S+ F+ ++E Y +L Sbjct: 660 YERGWIGRITQDRGIRLARILRGVEEVRTLDGQMLRSGESRRAGSFTQSLQEVYGLPATL 719 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + I GP LL I S G +G+ +QRYKGLGEMN QLWETTL+PD R+LL+V++ Sbjct: 720 VRKDRAQLINGPLDLLKAILSEGERGLQLQRYKGLGEMNPEQLWETTLDPDARTLLQVRV 779 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D ++ADD+F++LMGD VEPRREFIQ N+L LD Sbjct: 780 DDMTEADDIFTKLMGDVVEPRREFIQNNALSVANLD 815 >gi|304309656|ref|YP_003809254.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium HdN1] gi|301795389|emb|CBL43587.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium HdN1] Length = 807 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 398/811 (49%), Positives = 541/811 (66%), Gaps = 12/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSQEEDTKGYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGF 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITVT++ D + TV D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 61 CKEITVTIHQDETITVCDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R+G +++ + +G+ PL G + TGT+V F PSS+ Sbjct: 121 HGVGVSVVNALSEELVLTIRRKGKVWQQIYRHGVPQEPLAPIGESS-TTGTQVHFKPSSE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+++ L RLRELSFLNS V+I L D+R+ Y+GG+E FV +L+ +K Sbjct: 180 TFSNIEFSHEILARRLRELSFLNSGVKILLKDERTD--ATDVFCYEGGLEQFVKFLNLNK 237 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL +D +S+++A++WNDGY ENV C+TNNIPQ+DGGTHL+G RSA+TR I Sbjct: 238 TPLN-KVFYFSSEKDGVSVEVALQWNDGYQENVRCYTNNIPQRDGGTHLAGFRSAMTRAI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+++ +KK K S GDD REG +++S+K+ DP+FSSQTK+KLVSSEV+ VE+ + Sbjct: 297 NQYLDQEGITKKHKISASGDDAREGLVAIVSVKVGDPKFSSQTKDKLVSSEVKPAVETLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS +L E P EAKI+ +K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 FEKLSEYLAEQPNEAKIVCQKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ +D +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PP Sbjct: 477 LGCGIGREEYDPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK QY+KD+E+L YL ++ + I +L +++ + Sbjct: 537 LYKIKKGKQEQYLKDDEALSHYLTAAAIDDASLNPGGDLAPILGTELAALLEEYKRATNR 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSIN 658 + + + + + + + ++V + S + LN I SE ++ Sbjct: 597 VARLSRLYPGLLLNELIYRPALDTDDLNSVDVVRNWCSGIETHLNAICPPSEHYEVSAVE 656 Query: 659 --NSDILVKRI---ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 I V +I A GV + L S + ++ + Sbjct: 657 VPEKGIFVPKIILTAHGVPHHYTLGRDFFISNDYRMFTTLGAKVRNLIQEGAFVKKGEKV 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ +++ + R+G +QRYKGLGEMN QLWETT++P+ R +LRV + DA A Sbjct: 717 KTVSSFPEVVEWLMDESRRGHQIQRYKGLGEMNPEQLWETTMDPEMRRMLRVTVEDAIAA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +F+ LMGD VEPRR+FI+ N+L LDI Sbjct: 777 DQIFTTLMGDAVEPRRDFIETNALNVANLDI 807 >gi|325291465|ref|YP_004277329.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] gi|325059318|gb|ADY63009.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] Length = 811 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 505/812 (62%), Positives = 631/812 (77%), Gaps = 10/812 (1%) Query: 1 MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ N+ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTETSSSEVGANTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G +GTEVTF Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 L S D F++ D+++ TL+HRLREL+FLNS V+I L DKR + ++ + Y GG+EAFV Y Sbjct: 181 LASPDTFTMTDYDFGTLEHRLRELAFLNSGVRIVLTDKRHSDIKQEELLYDGGLEAFVRY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+ P+ I G +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A Sbjct: 241 LDRAKKPLVDKPVAIHGEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+TSY E S K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQMTSYAETSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ LS WLEEHP +AKI+V KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA Sbjct: 361 VESLVNEALSTWLEEHPSDAKILVGKVVEAAIAREAARKARELTRRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +TRGKS+QY+KDE++LE+YLI+ + + S V DLR I DA+ Sbjct: 541 IAQPPLYKVTRGKSVQYLKDEKALEEYLISMGIEDTSL-TLGSGEVRIGADLREVILDAV 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSW 653 ++ LI + + ++ +EQA I+G N E + +++A RL+ IAE++E+ W Sbjct: 600 RMRTLIDGLHSRYSRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGW 659 Query: 654 HG-SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G + + + +R+ RGV+E L+ I S +++ + R + Y+T L Sbjct: 660 SGLVLEDGGLRFERMVRGVKEISTLDMGLIGSVDARHIDQLAARTRDIYVTPPVLQRKDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +++ GP +LLD IF+ GRKG+SMQRYKGLGEMNA QLWETTL+ + RSLL+VK+ DA+ Sbjct: 720 TMELAGPRALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKVNDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFSRLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADGLFSRLMGDEVEPRRDFIQENALSVANLDI 811 >gi|257464605|ref|ZP_05628976.1| DNA gyrase subunit B [Actinobacillus minor 202] gi|257450265|gb|EEV24308.1| DNA gyrase subunit B [Actinobacillus minor 202] Length = 809 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 411/813 (50%), Positives = 553/813 (68%), Gaps = 14/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEQNQ-QSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CQDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G + PL V G+ + TGT V F PS D Sbjct: 120 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLD 178 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I L+D+R + Y+GGI+A+V YL+ Sbjct: 179 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 237 KTHIHNTPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRAALTRA 296 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 297 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L+ +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 357 SSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 417 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 476 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG++ ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 477 ITALGTGIGREDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L + I + Sbjct: 537 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEDAPALSGVALESLITQYNDV 596 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----- 652 KL + + + + + + + E ++ A +A+++ S Sbjct: 597 QKLFERLVRRYPAAVLNELIYTPALSTELVKDQAKVTAWNEQLMTQLMAKETGGSFYRAG 656 Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + I S N + + ++ Sbjct: 657 VFFNEERQIYEPEIIVTTHGMDTTYRLDFNFITSNEYGRITALGNELNDLLSPSAYVMRG 716 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + I+ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 717 ERRQAISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 776 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 809 >gi|157373150|ref|YP_001471750.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] gi|157315524|gb|ABV34622.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 813 Score = 931 bits (2407), Expect = 0.0, Method: Composition-based stats. Identities = 397/810 (49%), Positives = 542/810 (66%), Gaps = 12/810 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N+ +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + Sbjct: 7 NNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCN 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +T++ DGS +V D+GRGIP +H EEGISAAEVIMT LHAGGKF+ SYKVSGGLHG Sbjct: 67 DVIITIHADGSVSVKDDGRGIPVAIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS L+L I+R+G +YE + +G D P+ G A +TGTE+ F PS+D F Sbjct: 127 VGVSVVNALSHKLQLTIRRDGKLYEQFYTHGEPDEPIKAIGDAT-NTGTEIRFWPSTDTF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + F++D L R+RELSFLNS V + L+D+R + R+ Y GGI AFV YL+ +K P Sbjct: 186 TDVLFHFDILAKRVRELSFLNSGVGVRLVDER--DNRDEFFKYDGGISAFVDYLNVNKTP 243 Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 244 VNKEVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLN 303 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y+E+ +KK K GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + Sbjct: 304 TYMEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMG 363 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L +L EHP EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+D Sbjct: 364 EQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKD 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITAL Sbjct: 424 PALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI GF+YI +PPL Sbjct: 484 GCGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGFVYIAQPPL 543 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD+ +L ++L N +L + +S L + +++ + Sbjct: 544 YKVKKGKQEQYLKDDPALTEFLTNLALDGGEIHASANAPAMSGAPLEKLVYQYREVEAIF 603 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654 + E+ + + + D+ L E Sbjct: 604 DRLDQRYPLMLTERMLYHPALSNDVLADEAKVQQWCDAYVADLAEKESGGYIFSGEAFLE 663 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + G+ ++ + S + + ++ + Sbjct: 664 PERQVYLPKITIRKHGIDTHYLFSYDFLQSSDYERMAKLATALDGLIEEGGYVKRGERLK 723 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +++ LD + + R+G+ +QRYKGLGEMN QLWETT++P++R +L V I DA AD Sbjct: 724 EVSSFVEALDWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIAAD 783 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 784 QLFTCLMGDQVEPRREFIESNALNVANLDV 813 >gi|110635929|ref|YP_676137.1| DNA gyrase subunit B [Mesorhizobium sp. BNC1] gi|110286913|gb|ABG64972.1| DNA gyrase subunit B [Chelativorans sp. BNC1] Length = 815 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 506/808 (62%), Positives = 625/808 (77%), Gaps = 9/808 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA + Sbjct: 9 NGEPAEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYASL 68 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 +TV+LN DGSCTV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV Sbjct: 69 VTVSLNPDGSCTVTDNGRGIPTDIHAGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 128 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS+WLKL+I+R+G I+EMSF +G+ D PL VTG AG +TGTEVTFLPS + F+ Sbjct: 129 GVSVVNALSTWLKLKIRRKGQIHEMSFSHGVPDAPLAVTGDAGEETGTEVTFLPSPETFT 188 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF+Y TL+HRLREL+FLNS V+I L D+R + +E Y GGI FV YLDR KKPL Sbjct: 189 KTDFDYATLEHRLRELAFLNSGVRILLSDRRHADLKEQQFLYDGGIIEFVKYLDRAKKPL 248 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI I G RD I+++LAM WND YHENVL FTNNIPQ+DGGTH++G R ALTRQ+TSY Sbjct: 249 IPEPISISGERDGITVELAMWWNDSYHENVLAFTNNIPQRDGGTHMAGFRGALTRQVTSY 308 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + S +KK+K S+ GDDCREG ++VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ Sbjct: 309 ADVSGLTKKEKVSLTGDDCREGLSAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNEA 368 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L WLEEHP EAKI+V KV++A+ R+AAR+AR+LTRRKGVLDI SLPGKLADC ERDP Sbjct: 369 LGTWLEEHPAEAKILVGKVVEAAAAREAARKARELTRRKGVLDITSLPGKLADCQERDPA 428 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 KSELF+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS IGTLITALGT Sbjct: 429 KSELFIVEGDSAGGSAKSGRSRKNQAILPLRGKILNVERARFDRMLSSDMIGTLITALGT 488 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPLY Sbjct: 489 GIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYIAQPPLYK 548 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +TRGKS+QY+KDE + E++LI+ L E V S DL+ I+DA + LI Sbjct: 549 VTRGKSVQYIKDEAAFEEFLIDTGLQEAALELST-GEVRSGQDLKQVIEDARAVRSLING 607 Query: 604 FYPNHDKTFIEQ--AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN--- 658 + +D+T +EQ + +D + A+ +A RL+ I+E++E+ W G +N Sbjct: 608 LHTRYDRTVVEQAAIAGALNAAVLADPGRSAEAAAYVARRLDMISEETERGWQGRVNPSN 667 Query: 659 --NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 L +R RGV++ +L+ + I S S+ ++ R++E + L N + Sbjct: 668 EGAGGYLFERTVRGVRDVVILDAALIGSADSRAIDRYTPRLQEVFAMPPVLRRNDKSETV 727 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +GP +LLD +F+ GRKG++MQRYKGLGEMNA QLWETTL+PD RSLL+VK+ DA+ AD L Sbjct: 728 SGPMALLDAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPDARSLLQVKVPDATDADAL 787 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+RLMGDEVEPRR+FIQEN+L LD+ Sbjct: 788 FARLMGDEVEPRRDFIQENALSVANLDV 815 >gi|170724374|ref|YP_001758400.1| DNA gyrase subunit B [Shewanella woodyi ATCC 51908] gi|169809721|gb|ACA84305.1| DNA gyrase, B subunit [Shewanella woodyi ATCC 51908] Length = 805 Score = 930 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 401/808 (49%), Positives = 542/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + + Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDV 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +T++ DGS +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IITIHADGSVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L+L I+R+G +YE + G P+ G A +TGTE+ F PSS+ FS Sbjct: 121 VSVVNALSSKLQLTIRRDGKLYEQFYNMGEPVEPIKAIGDAT-NTGTEIRFWPSSETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++D L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+ +K P+ Sbjct: 180 TLFHFDILAKRVRELSFLNSGVGIRLVDERDNKD--EFFKYEGGISAFVDYLNVNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + SY Sbjct: 238 KDVFHFIQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E+ +KK K GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 298 MEREGYNKKGKTGATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L EHP EAK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVVTLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 478 GIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+ +L +YL N +L +S L + +++ + + Sbjct: 538 VKKGKQEQYLKDDPALTEYLTNLALDGGEIHPSADAPAMSGAPLEKLVYQYREVEAIFER 597 Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNF-----IAEKSEKSWHGS 656 + K E+ + + E SD+ L + +E Sbjct: 598 LEQRYPKLLTERMLYHPALSHELLSDEAKVKQWCDTYVADLEDRDTGGVHYSAEAFLDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 V G+ F+ + S + +N +E + ++ Sbjct: 658 RKVYLPKVTIRKHGIDTNFLFTYDFLNSHDYELMTKLANALEGLIEEGGYVKRGERMKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 T L+ + + ++G+ +QRYKGLGEMN QLWETT++P++R +L V I DA AD L Sbjct: 718 TTFVEALNWLMNDSKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLVVTIEDAIAADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDHVEPRRDFIESNALNVANLDV 805 >gi|294138805|ref|YP_003554783.1| DNA gyrase subunit B [Shewanella violacea DSS12] gi|23307486|dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea] gi|293325274|dbj|BAJ00005.1| DNA gyrase, B subunit [Shewanella violacea DSS12] Length = 806 Score = 930 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 400/809 (49%), Positives = 540/809 (66%), Gaps = 13/809 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ + Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEV 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +T++ D S +V D+GRGIP D+H EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IITIHADNSVSVKDDGRGIPVDIHPEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALS L+L I+R G +YE + G+ D P+ G A TGTE+ F PS + F + Sbjct: 121 VSVVNALSEKLQLTIRRNGKLYEQFYTMGVPDAPIKEIGDAT-STGTELRFWPSHETFTT 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F++D L R+RELSFLNS V I LID+R + R+ Y+GGI AFV YL+ +K + Sbjct: 180 NIKFHFDILVKRVRELSFLNSGVGIRLIDER--DNRDEFFQYQGGISAFVDYLNVNKTAV 237 Query: 244 MQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + RD+ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + + Sbjct: 238 NKDVFHFIQERDDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNA 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y+E+ +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 298 YMEREGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L EHP EA++IV K++DAS R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 KLGDYLMEHPNEARLIVGKIIDASRAREAARKAREMTRRKGALDLGGLPGKLADCQEKDP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 ALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D +D +K RYH I+IMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 478 CGIGRDEYDPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +G+ QY+KDE +L ++L N +L IS L + +++ + Sbjct: 538 KVKKGRQEQYLKDELALTEFLTNLALDGGELHSSADAPAISGAPLEKLVYQYREVETIFD 597 Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHG 655 + E+ + + E D+ + L ++ Sbjct: 598 RLNMRYPTLLTERMLYHPALDAEMLADEAKVKQWCDEFVADLTEKESGGVMYSADPVMDP 657 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 V G+ ++ + S + + +E + + + Sbjct: 658 ERKVYLPNVHIRKHGIDTSYLFTYDFLNSSDYERMAKLAAALEGLIVEGGYIKRGERMKE 717 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I+ L+ + + R+G+ +QRYKGLGEMN QLWETT++P+TR +L V I DA AD Sbjct: 718 ISTFVEALNWLMNDSRRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLVVTIEDAIGADQ 777 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF+ LMGD+VEPRR+FI+EN+L LD+ Sbjct: 778 LFTCLMGDQVEPRRQFIEENALNVANLDV 806 >gi|254429302|ref|ZP_05043009.1| DNA gyrase, B subunit [Alcanivorax sp. DG881] gi|196195471|gb|EDX90430.1| DNA gyrase, B subunit [Alcanivorax sp. DG881] Length = 805 Score = 930 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 411/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MAEKNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S ++ DNGRGIPT+LH+EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVG Sbjct: 61 KVVIHPDESMSIQDNGRGIPTELHEEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I+R G ++E + +G+ NPL V G + +GT V F PS + FS Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYHHGVPANPLEVVG-TTDSSGTAVHFRPSPETFSN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V+I L+D+RS + Y+GG+ AFVSYL+ +K L Sbjct: 180 IKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAFVSYLNTNKTALN 237 Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q + D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY Sbjct: 238 QVFHFNFEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K KK+K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + D Sbjct: 298 MDKEGFLKKEKANPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +L E+P EA+ IV+K++DA+ RDAAR+AR++TRRKG LDIA LPGKLADC ++DP Sbjct: 358 FQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG Sbjct: 418 LSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++I+KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PPLY Sbjct: 478 GIGRDEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK Y+KD+ ++E+YL +L + D IS L I + + K++ Sbjct: 538 VKKGKQETYLKDDPAMEEYLTTLALDKTGLYPGDDAPPISGEPLAKLIAEYRGVMKIVDR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE-----KSWHGS 656 + +EQ + N D+ L R++ I + ++ Sbjct: 598 QSRVFPEEVLEQMIYMPSLNEASLKDEAAMAQWCETLGKRVDAITDATQAFTITAQRDEE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 V+ +A GV ++ + + S + + +E + + I Sbjct: 658 RGLYLPRVQVLAHGVPREYRVTLDFLQSPDYQKIKALGETLEGLLAEDAYIQRGESQRPI 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + R+G S QRYKGLGEMNA QLWETT++P++R +L+V I DA AD + Sbjct: 718 RHFAEALDWLMVQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAIAADQI 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+V+PRR+FI+ N+L LD+ Sbjct: 778 FTCLMGDDVDPRRQFIESNALQVSNLDV 805 >gi|192360461|ref|YP_001980528.1| DNA gyrase subunit B [Cellvibrio japonicus Ueda107] gi|190686626|gb|ACE84304.1| DNA gyrase, B subunit [Cellvibrio japonicus Ueda107] Length = 806 Score = 930 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 407/813 (50%), Positives = 544/813 (66%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSE---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + VT++ D + +VSDNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CTEVRVTIHPDETVSVSDNGRGIPVDMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +LKL I+R G I+E + +G+ D PL V G + TGTE+ F PS++ Sbjct: 117 HGVGVSVVNALSEYLKLTIRRAGKIHEQIYCHGVPDAPLTVVGDS-VTTGTEIHFKPSAE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F YD L RLRELSFLNS V+I L D+RS + Y+GG++AFV +L+++K Sbjct: 176 TFTNIEFQYDILAKRLRELSFLNSGVRIVLKDERSGKE--EIYQYEGGLKAFVEHLNKNK 233 Query: 241 KPLMQSPIRI-QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + + G D I +++A++WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TTINKMVHFVASGREDGIGVEVALQWNDSFQENLFCYTNNIPQRDGGTHLAGFRAALTRL 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+EK K K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 294 LNTYIEKEGIGKNAKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + S++L E+P +AK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 354 MAEHFSSYLLENPNDAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT Sbjct: 414 KDPALSELYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++ KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G +YI +P Sbjct: 474 ALGCGIGKEDYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK QY+KDE ++ ++L +L + IS L + K+ Sbjct: 534 PLYKIAKGKQEQYLKDEAAMTEFLTQAALDGSSLHVNLTAPGISGEALEKLVQQYRKVMA 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 I+ + +E+ + E DQ +L R + A + + S+ Sbjct: 594 TIERLSRLYPADVLEKMIYMPSLRAEHLADQGHIQQWCDQLLARFSLDARDGSQKYIISV 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ IA G+ + S +E + Sbjct: 654 REDQERHLFLPEVEIIAHGISTHYPFNHDFFASGEYAQIVALGEELETLIEEGAYVQRGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K I L+ + RKG ++QRYKGLGEMN QLWETT+NP+TR +LRV I DA Sbjct: 714 RKQTIASFAEGLEWLMKESRKGYNIQRYKGLGEMNPEQLWETTMNPETRRMLRVTIQDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 774 TADQIFTTLMGDQVEPRRDFIETNALAVANLDV 806 >gi|53802866|ref|YP_115417.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath] gi|53756627|gb|AAU90918.1| DNA gyrase, B subunit [Methylococcus capsulatus str. Bath] Length = 804 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 411/810 (50%), Positives = 546/810 (67%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + + YD+ I+ILKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE++ GY Sbjct: 1 MT--TKPNEYDSSHIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAMAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TVSD+GRGIP D+H EEG SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 59 CKRICVTVHEDESVTVSDDGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I R G Y + +G PL G A + TGT V F PS Sbjct: 119 HGVGVSVVNALSERLWLEICRGGRRYRQEYRDGEPLAPLAEVGPA-DTTGTTVRFKPSPQ 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+Y+ L RLRELSFLNS V+I L DKRS + ++GGI AFV +L+++K Sbjct: 178 IFSNIEFHYEILAKRLRELSFLNSGVRIELEDKRSGKN--EVFEFEGGIRAFVEHLNKNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL +Q RD + +++AM+WND Y ENV C+TNNIPQ+DGGTHL+G R+ALTR + Sbjct: 236 TPLFDKVFHLQAERDGVGVEIAMQWNDSYQENVFCYTNNIPQRDGGTHLAGFRAALTRTV 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E+ KK K + +GDD REG T+VLS+K+PDP+FSSQTKEKLVSSEV+SVVES + Sbjct: 296 NQYIEEQGLLKKQKVATVGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKSVVESVM 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E+P A+ I KV+DA+ R+AAR+AR++TRRK LDIA LPGKLADC E+ Sbjct: 356 AEKLNDFLLENPSIARTIANKVVDAARAREAARKAREMTRRKSALDIAGLPGKLADCQEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SELF+VEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLSS+E+GTLITA Sbjct: 416 DPALSELFIVEGDSAGGSAKQGRDRRSQAILPLKGKILNVERARFDKMLSSEEVGTLITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PP Sbjct: 476 LGCGIGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVDRGHVYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +G+ YVKD+ L +YL+ ++ + + + I L + L + KL Sbjct: 536 LYKVKKGRQEHYVKDDAELNEYLLQLAIDKARLVVDEQSPPIQGQGLEKLSHEYLHVRKL 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I +D+ F+E + + ++ + A + + + ++ + Sbjct: 596 IGRLAHRYDEAFLEALTVLSPLSAAELEDEALRR-EWFAEVERIVNAEGPAHYVVAVRSG 654 Query: 661 D------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 D + V R GV+ F + F R+ + ++ N ++ Sbjct: 655 DAPGDFTVQVDRRLHGVERTFEVGAGFFGGNDYAVLSAFGQRVAGLFGDTSTVCFNDERR 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + L D + + +KG +QRYKGLGEMN QLWETTL+ +TR LL+V+I DA AD Sbjct: 715 PVRSFKELFDWMLTEAKKGQHIQRYKGLGEMNPEQLWETTLDANTRRLLQVRIEDAIAAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSL-PSALDI 803 ++F+ LMGD+VEPRREFI+ N+L + LD+ Sbjct: 775 EVFTTLMGDQVEPRREFIERNALQVANLDV 804 >gi|217978065|ref|YP_002362212.1| DNA gyrase, B subunit [Methylocella silvestris BL2] gi|217503441|gb|ACK50850.1| DNA gyrase, B subunit [Methylocella silvestris BL2] Length = 821 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 471/803 (58%), Positives = 594/803 (73%), Gaps = 10/803 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y ADSI++L+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A +TVTLN Sbjct: 20 YGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATRVTVTLN 79 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS V+D+GRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVN Sbjct: 80 ADGSVAVTDDGRGIPTDIHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 139 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-----TGTEVTFLPSSDIFSV 184 ALSSWLKLRI R+G + + F +G PL VTG A GTEVTF S + F+ Sbjct: 140 ALSSWLKLRIWRDGKEHLIEFAHGDAVTPLKVTGPAPTHDGKPKRGTEVTFQASPETFTK 199 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 D+++ T++HRLREL+FLNS V+I L D R E R T++Y GG+EAFV YLDR K PL+ Sbjct: 200 VDYDFATIEHRLRELAFLNSGVRIELTDARGAEVRSETLYYDGGLEAFVRYLDRAKTPLI 259 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI I+G R+ I++++A+ WND YHENVL FTNNIPQ+DGGTHL+ R+ALTRQ+T Y Sbjct: 260 AKPILIKGEREAITVEVALWWNDSYHENVLPFTNNIPQRDGGTHLAAFRAALTRQLTGYA 319 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E+S K++K + GDDCREG T VLS+K PDP+FSSQTKEKLVSSEVR VE VN+ L Sbjct: 320 ERSGLLKREKVDLTGDDCREGLTCVLSVKAPDPKFSSQTKEKLVSSEVRPAVEGLVNEML 379 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +WLEEHP EA+ +V KV++A R+AAR+AR+LTRRKG LDI++LPGKLADC ERDP K Sbjct: 380 GSWLEEHPQEARTVVGKVIEAGQAREAARKARELTRRKGALDISNLPGKLADCQERDPAK 439 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELFLVEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSSQEIGTLITALGTG Sbjct: 440 SELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNVERARFDKMLSSQEIGTLITALGTG 499 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D F+++KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQM LI G L+I +PPLY + Sbjct: 500 IGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHLFIAQPPLYKV 559 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RG S QY+KDE + EDYLI L + D S DLR +++A + +++ Sbjct: 560 KRGGSEQYLKDERAREDYLIGNGLEGAVLRLADGVE-RSGADLRAIVEEARTVRQVLSAT 618 Query: 605 YPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + +D+ +EQA I+G ++ ++A+++A RL+ +A+ E+ W G + N Sbjct: 619 HSRYDRAVVEQAAITGALRPIGPEDEAGAEAIAAEIAGRLDALADDMERGWSGRVVNGGY 678 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + R+ RGV++ L+ + S ++ + + + + + D+ + +GP L Sbjct: 679 VFSRLVRGVRQAATLDAGLLASSEARRLNEHAASLHDVFARPAVFMRRADQSQASGPGEL 738 Query: 723 LDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L + + G+KGIS MQRYKGLGEMN QLWETTL+ D RSLL+VKI + ADD+F +LM Sbjct: 739 LSAVMAAGQKGISQMQRYKGLGEMNPEQLWETTLDRDARSLLQVKIKEGDDADDIFVKLM 798 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPRREFIQEN+L LD+ Sbjct: 799 GDVVEPRREFIQENALNVSNLDV 821 >gi|323155375|gb|EFZ41558.1| DNA gyrase, B subunit [Escherichia coli EPECa14] Length = 790 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 401/792 (50%), Positives = 539/792 (68%), Gaps = 11/792 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+REG I+ + +G+ PL VTG TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ L+ Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLA 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD+E+++ Y I+ +L S ++ L + + K+I Sbjct: 539 KGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRME 598 Query: 606 PNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSIN 658 + K +++ + D++ + L + LN + K + + N Sbjct: 599 RRYPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQN 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +V+ GV + L+ I + ++ + + + Sbjct: 659 LFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVAS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + R+G+S+QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 719 FEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFT 778 Query: 779 RLMGDEVEPRRE 790 LMGD VEPRR Sbjct: 779 TLMGDAVEPRRA 790 >gi|182677812|ref|YP_001831958.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182633695|gb|ACB94469.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 817 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 472/809 (58%), Positives = 597/809 (73%), Gaps = 10/809 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y ADSI++L+GLDAV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L G+A Sbjct: 10 TNEEQAYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGHATR 69 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 +TVTLN DGS TV+D+GRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV Sbjct: 70 VTVTLNADGSVTVTDDGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 129 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGTEVTFLPS 178 GVSVVNALS+WLKLRI R+G +E++F +G+ + L V G A GTEVTFLPS Sbjct: 130 GVSVVNALSTWLKLRIWRDGKEHEITFEHGVAKSSLAVVGPAPEIDGKPKRGTEVTFLPS 189 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + FS+ DF Y T++HRLREL+FLNS V+I L D R E + + Y+GG+EAFV +LDR Sbjct: 190 PETFSMVDFTYATIEHRLRELAFLNSGVRILLTDARGAEVKVEELHYEGGLEAFVRFLDR 249 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K PL+ PI I G RD I+++ A+ WND YHE+VL FTNNIPQ+DGGTHL+GLRSALTR Sbjct: 250 AKSPLLDQPILIAGERDGITVEAALWWNDSYHEHVLAFTNNIPQRDGGTHLTGLRSALTR 309 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Q+T Y ++S K++K + DDCREG T VLS+K+PDP+FSSQTKEKLVSSEVR VVES Sbjct: 310 QVTGYADRSGLIKREKVDLAPDDCREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVES 369 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 VND L W EEHP EA+ I+ KV++A+ R+AAR+AR+LTRRKG LD+A+LPGKLADC Sbjct: 370 LVNDKLGQWFEEHPQEARSIIGKVVEAAQAREAARKARELTRRKGALDVANLPGKLADCQ 429 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP K+ELFLVEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSSQEIGTLI Sbjct: 430 ERDPAKAELFLVEGDSAGGSAKQGRNREYQAVLPLRGKILNVERARFDKMLSSQEIGTLI 489 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG + F+ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQM LI G LYI + Sbjct: 490 TALGTGIGHEDFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMRPLIERGHLYIAQ 549 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + RG S QY+KDE + EDYLIN L + + DLR +++A Sbjct: 550 PPLYKVKRGSSEQYLKDERAREDYLINSGLDHAVLRLANGVE-RGGADLRAIVENAQLAR 608 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS 656 +++ + +++ +EQ I+G + + +LA ++A RL+ +AE E+ W G+ Sbjct: 609 QILSGLHSRYNRRIVEQTAIAGALQPITPDQETEAPALAVEVAARLDELAEDMERGWTGT 668 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + N + R RGV++ +L+ + S ++ + + + + D+ + Sbjct: 669 VENGGYIFARTLRGVRQAAILDAGLLASAEARRLNDLAPVFHDIFARPALFLRQNDEKPV 728 Query: 717 TGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 +GP LLD + + G+KGIS MQRYKGLGEMN QLWETTL+ + RSLL+V+I + ADD Sbjct: 729 SGPSDLLDAVMAAGQKGISQMQRYKGLGEMNPDQLWETTLDREARSLLQVRIKEGDDADD 788 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F +LMGD VEPRREFIQ+N+L LD+ Sbjct: 789 IFVKLMGDIVEPRREFIQDNALNVHNLDV 817 >gi|170743430|ref|YP_001772085.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46] gi|168197704|gb|ACA19651.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46] Length = 808 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 472/809 (58%), Positives = 609/809 (75%), Gaps = 7/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ ++ +Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MAEPARDLTPDTYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A ++TVTLN DGSCTVSDNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHATLVTVTLNPDGSCTVSDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+WL+LRI R G + M F +G PL V G AG+ GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTWLRLRIWRGGQEHAMEFRHGDAVAPLAVVGPAGDRRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ FS+ +F+Y TL+ RLREL+FLNS V+I L D R E + + Y+GG+EAFV YLD Sbjct: 181 STETFSMVEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELVYEGGVEAFVRYLD 240 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K PL+ P+ ++ RD IS+++A+ WND YHE VL FTNNIPQ+DGGTH++G R+ALT Sbjct: 241 RTKTPLVAKPVVVRAERDGISVEVALWWNDSYHETVLPFTNNIPQRDGGTHMAGFRAALT 300 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 RQIT Y E S +KK+K ++ GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEVR VVE Sbjct: 301 RQITGYAESSGIAKKEKVTLTGDDCREGLTAIISVKVPDPKFSSQTKDKLVSSEVRPVVE 360 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + + +GLS WLEE+P EA+ IV KV +A+ R+AAR+AR+LTRRKG LDIASLPGKLADC Sbjct: 361 AVLGEGLSNWLEENPGEARTIVGKVAEAAAAREAARKARELTRRKGALDIASLPGKLADC 420 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ERDP K E+ LVEGDSAGGSAKQGR R QA+LPLRGKILNVERARFDKMLSSQEIGTL Sbjct: 421 QERDPSKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERARFDKMLSSQEIGTL 480 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G LYI Sbjct: 481 ITALGTGIGREEFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIA 540 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++G+S Y+KDE +LEDYLI+ + + L+ +D+A + Sbjct: 541 QPPLYKASKGRSHLYLKDERALEDYLIDGGVEGASLRLAT-GVAFAGPQLKALVDEARGV 599 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEKSWHG 655 ++ + +D+T +EQA I+G + + +A ++A RLN ++++ E+ W G Sbjct: 600 RTILHGLHTRYDRTVVEQAAIAGALRPALAENPAEAEVVADEVARRLNALSDEIERGWEG 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ R RGV++ VL+ + I S ++ ++ + + Y ++L G+++ Sbjct: 660 EARAGGYVLSRTLRGVRQVAVLDEALISSQEARRLDERTDSLRQIYDAPVTLQRKGEEVV 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + GP +L +T ++GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ D + ADD Sbjct: 720 LHGPVALFETTMALGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVKDTTDADD 779 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 LFVKLMGDVVEPRREFIQENALNVANLDV 808 >gi|88860613|ref|ZP_01135250.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas tunicata D2] gi|88817208|gb|EAR27026.1| DNA gyrase, subunit B (type II topoisomerase) [Pseudoalteromonas tunicata D2] Length = 805 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 412/804 (51%), Positives = 556/804 (69%), Gaps = 13/804 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDESL G+ D I + ++ Sbjct: 5 YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDESLAGHCDDIAIMIH 64 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS +V DNGRGIPT +H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVN Sbjct: 65 TDGSVSVRDNGRGIPTSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS L+L I+REG ++E + G+ D PL V G + + TGTE+ F PS + F+ +++Y Sbjct: 125 ALSEKLRLTIRREGKVHEQFYTRGVPDAPLAVIGES-DTTGTEIRFWPSGETFTDLNYHY 183 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 D L RLRELSFLNS V I L+D+R + R Y+GGI+AFV YL+++K P+ QS Sbjct: 184 DILAKRLRELSFLNSGVSIRLMDER--DERNDHFKYEGGIKAFVEYLNKNKTPVHQSVFH 241 Query: 250 IQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 D IS+++AM+WNDG+ E V CFTNNIPQ+DGGTHL+G R ALTR + +Y++K Sbjct: 242 FNSTREEDGISVEVAMQWNDGFQEGVYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKE 301 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + L+ + Sbjct: 302 GFNKKEKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMTEKLTEF 361 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L EHP EAKI+V K++DA+ R+AARRARD+TRRKG +D+A LPGKLADC E+DP SEL Sbjct: 362 LLEHPTEAKIVVTKIVDAARAREAARRARDMTRRKGAMDLAGLPGKLADCQEKDPALSEL 421 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+ Sbjct: 422 YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR 481 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D + KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G++YI +PPLY + +G Sbjct: 482 DEYKPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKG 541 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K +Y+KD+ +L +YL +L + D I+ L N + D + +I Sbjct: 542 KQERYIKDDPALTEYLTTLALEDSSLYVNDKAPAITGLALENIVKDYQATEGVIARLTRK 601 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-------SWHGSINNS 660 + ++ ++Q + ++ +A A + ++E + + N + Sbjct: 602 YPESILKQLIYQPALEEADLKDSAKVIAWTQAVVDSLVSEDVDATIFNANTHFDAERNLT 661 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 ++ G+ + +L I S + + + + +++T Sbjct: 662 FPVITIRQHGIDKDHILNLDFITSHDYRKIKKTGELMANLIEEGGYIQRGEKTLEVTNFV 721 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L+ + + ++G+ +QRYKGLGEMN SQLWETT++P R +L+VKI DA AD LF+ L Sbjct: 722 DALEWLITESKRGLYIQRYKGLGEMNPSQLWETTMDPSARRMLQVKIEDAIAADQLFATL 781 Query: 781 MGDEVEPRREFIQENSLP-SALDI 803 MGD+VEPRREFI+ N+L LD+ Sbjct: 782 MGDQVEPRREFIERNALRVVNLDV 805 >gi|240949606|ref|ZP_04753941.1| DNA gyrase subunit B [Actinobacillus minor NM305] gi|240295864|gb|EER46540.1| DNA gyrase subunit B [Actinobacillus minor NM305] Length = 809 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 410/813 (50%), Positives = 553/813 (68%), Gaps = 14/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q SYD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEQNQ-QSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CQDIVVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L+L I+REG+++E + G + PL V G+ + TGT V F PS D Sbjct: 120 HGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPNAPLTVIGNT-DKTGTMVRFWPSLD 178 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +F Y L RLRELSFLNS V I L+D+R + Y+GGI+A+V YL+ Sbjct: 179 IFKNKTEFEYKILSKRLRELSFLNSGVSIRLVDERDGKE--EHFKYEGGIKAYVEYLNEG 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + P + +D I ++++++WND Y+ENV CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 237 KTHIHNMPFYLSTEKDGIGVEVSLQWNDSYNENVYCFTNNIPQRDGGTHLAGFRAALTRA 296 Query: 300 ITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y++ S KK ++ GDD REG +V+S+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 297 LKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKVPDPKFSSQTKDKLVSSEVRGAVE 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S +N+ L+ +L E+P +AK IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC Sbjct: 357 SSMNEALAEYLAENPDDAKNIVSKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 417 QEKDPALSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 476 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI NG++YI Sbjct: 477 ITALGTGIGRDDYNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIENGYIYIA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + +GK +Y++D + + Y I+ +L + +S L + I + Sbjct: 537 QPPLYKVKKGKQERYIQDNDEMSQYEIDIALEGAGLFVSEDAPALSGVALESLITQYNDV 596 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS----- 652 KL + + + + + + + + E ++ A +A+++ S Sbjct: 597 QKLFERLVRRYPASILNELIYTPALSTELAKDQAKVTAWNEQLMTQLMAKETGGSFYRAG 656 Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ + + G+ + L+ + + S + + + ++ Sbjct: 657 VFFNEERQIYEPEIIVTTHGMDTTYRLDFNFMTSNEYGRITALGHELNDLLSPSAYVVRG 716 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + I+ LD + RKG+++QRYKGLGEMN QLWETT++P R +L+V ITDA Sbjct: 717 ERRQAISSFAEALDWLVKESRKGLTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDA 776 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LFS LMGDEVEPRR+FI+ N+L + LDI Sbjct: 777 IAADKLFSTLMGDEVEPRRDFIESNALYAQLDI 809 >gi|159184123|ref|NP_353052.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58] gi|159139460|gb|AAK85837.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58] Length = 811 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 502/812 (61%), Positives = 626/812 (77%), Gaps = 10/812 (1%) Query: 1 MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ N+ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MTETSSSEVGANAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNADGSVTVTDNGRGIPTDIHSSEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKLRI+R G ++E+ F +G+ D PL V G +GTEVTF Sbjct: 121 VSGGLHGVGVSVVNALSVWLKLRIRRNGKLHEIGFTHGVADAPLSVIGEYEGRSGTEVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 L S F++ D++Y TL+HRLREL+FLNS V+I L DKR + ++ + Y GG+EAFV Y Sbjct: 181 LASPQTFTMTDYDYGTLEHRLRELAFLNSGVRILLTDKRHSDVKQQELLYDGGLEAFVRY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR KKPL+ PI I +D I++++A+ WND YHENVLCFTNNIPQ+DGGTH++G R+A Sbjct: 241 LDRAKKPLVDKPIAIHSEKDGITVEVALWWNDSYHENVLCFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+TSY + S K++K S+ G+DCREG T++LS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQVTSYADTSGIMKREKVSLQGEDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ LS WLEEHP EAKI++ KV++A++ R+AAR+AR+LTRRKG LDIASLPGKLA Sbjct: 361 VESLVNEALSTWLEEHPSEAKILIGKVVEAAVAREAARKARELTRRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSERDP KSELFLVEGDSAGGSAKQGRSRE QAILPLRGKILNVERARFDKMLSSQEIG Sbjct: 421 DCSERDPAKSELFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LY Sbjct: 481 TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +TRGKS+QY+KDE++LE+YLI+ + E V DLR I DAL Sbjct: 541 IAQPPLYKVTRGKSVQYLKDEKALEEYLISMGIEEASLTLGT-GEVRVGADLREVILDAL 599 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSW 653 ++ LI + + ++ +EQA I+G N E + +++A RL+ IAE++E+ W Sbjct: 600 RMRSLIDGLHSRYSRSIVEQAAIAGALNPELSADAARAQETVAEVARRLDMIAEETERGW 659 Query: 654 HGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G + + + +R+ RGV+E L+ + S +++ R + Y T L Sbjct: 660 SGVVLEDGGLRFERMVRGVKEISTLDMGLLGSADARHIDQLVARTRDIYATPPVLQRKDG 719 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +++ GP +LLD IF+ GRKG+SMQRYKGLGEMNA QLWETTL+ + RSLL+V++ DA+ Sbjct: 720 SMELAGPRALLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVRVNDATD 779 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+RLMGDEVEPRR+FIQEN+L LDI Sbjct: 780 ADGLFARLMGDEVEPRRDFIQENALNVANLDI 811 >gi|261854634|ref|YP_003261917.1| DNA gyrase subunit beta [Halothiobacillus neapolitanus c2] gi|261835103|gb|ACX94870.1| DNA gyrase, B subunit [Halothiobacillus neapolitanus c2] Length = 817 Score = 930 bits (2403), Expect = 0.0, Method: Composition-based stats. Identities = 410/820 (50%), Positives = 553/820 (67%), Gaps = 20/820 (2%) Query: 1 MSDNI---------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51 MSDN Q+S YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN Sbjct: 1 MSDNTPNDASQNAGQSSGYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDN 60 Query: 52 AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111 A+DE+L G+ D +TVT++ DGS +VSDNGRGIP D+H EEG+SAAEVIMT LHAGGKF+Q Sbjct: 61 AVDEALAGHCDTVTVTMHADGSVSVSDNGRGIPVDIHAEEGVSAAEVIMTVLHAGGKFDQ 120 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 SYKVSGGLHGVGVSVVNALS L+L I R G+ Y S+ G+ PL G A +GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDELELDIYRGGHAYHQSYRLGVPQAPLAEVG-ATEKSGT 179 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 + FLPS IF+ F+YD L RLRELSFLNS +++ L D+ S R T +Y+GGI A Sbjct: 180 SIRFLPSPTIFTDVVFHYDILAKRLRELSFLNSGIRVFLNDEISG--RADTFYYEGGIRA 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV +L++ K + ++ + G +D++ ++LA++WND Y EN+ C+TNNIPQ+DGGTHL+G Sbjct: 238 FVEHLNKGKTVIHKNVLSFSGQKDSVLVELALQWNDSYQENLFCYTNNIPQRDGGTHLTG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALTR + Y+E++ KK K S G+D REG +V+S+K+PDP+FSSQTKEKLVSSE Sbjct: 298 FRTALTRTLNDYMERAGILKKAKVSTSGEDWREGLVAVISVKVPDPKFSSQTKEKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+S VES ++ L+ +LEE+P EA +I K+++A+ R+AARRAR++TRRKG LDIA LP Sbjct: 358 VKSAVESLTSERLAEFLEENPQEALLITNKIIEAARAREAARRAREMTRRKGALDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS Sbjct: 418 GKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALG GIG++ F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM L+ Sbjct: 478 AEVGTLITALGCGIGREDFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMKELVER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + +GK QY+KD+ +L YL+ ++ +IS L + Sbjct: 538 GHIYIAQPPLYKVKKGKQEQYLKDDLALNQYLLQLAVDGAALQVNAEAPLISGPALESMA 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANRLNFIAE- 647 + L +I +D ++ + E + + ++ +N A+ Sbjct: 598 REYLVAQAVIDRLSHRYDPAALKAVLHLPPMTAAEIVEDSALFEAWLNRFTESMNQFADA 657 Query: 648 ---KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 S + + I + R GV + L + + + +++ Sbjct: 658 GVNYSSRFARTEEGLAGIQITRSQHGVSHETFLPAGFFSTADYRVLGELAIQLDGLIGED 717 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 ++ IT +D + GR+G+ +QRYKGLGEMN QLWETT+NP+TR LL+ Sbjct: 718 ARVLRGEKSAPITHFEQAIDWLMQEGRRGLGIQRYKGLGEMNPDQLWETTMNPETRRLLQ 777 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 V+I DA +D++F+ LMGD VEPRR+FI++ +L +DI Sbjct: 778 VRIEDAIASDEIFTILMGDLVEPRRDFIEKFALSAVNIDI 817 >gi|170746766|ref|YP_001753026.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831] gi|170653288|gb|ACB22343.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831] Length = 814 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 459/815 (56%), Positives = 593/815 (72%), Gaps = 13/815 (1%) Query: 1 MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+D + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MADTPQTEPAVYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+AD++TVTLN DGSCTVSDNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSG Sbjct: 61 GHADLVTVTLNADGSCTVSDNGRGIPVDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALSSWL+LRI R + M F +G PL V G GTEVTFLPS Sbjct: 121 GLHGVGVSVVNALSSWLRLRIWRNDKEHAMEFRHGDAVAPLEVIGPGNGRRGTEVTFLPS 180 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 ++ F++ +F+Y TL+ RLREL+FLNS V+I L D R E + ++Y+GGIEAFV YLDR Sbjct: 181 TETFTMIEFDYATLEKRLRELAFLNSGVRIVLTDARHAEKKREELYYEGGIEAFVRYLDR 240 Query: 239 HKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +KP+ M SP+ + RD I +++A WND ++E VL FTNNIPQ+DGGTH++G R+AL Sbjct: 241 SRKPIDGMTSPVVVSSERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQ+T Y E S +KK+K S+ G+DCREG T+V+S+++PDP+FSSQTK+KLVSSEVR V Sbjct: 301 TRQVTGYAESSGIAKKEKVSLTGEDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPAV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ +N+GLS WLEE+P +A+ ++ KV+ A+ R+AAR+AR+ RKG LDIASLPGKLAD Sbjct: 361 ENVLNEGLSTWLEENPSQARSVMGKVVLAASAREAARKARETVTRKGALDIASLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP K E+ LVEGDSAGGSAKQGR R QA+LPLRGKILNVER R D+MLSS EIGT Sbjct: 421 CQERDPTKCEILLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIGT 480 Query: 477 LITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 LITALG GIG+ S F+ KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 481 LITALGAGIGRSSTDREGFNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIER 540 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G LYI +PPLY RG+ Y+KDE +LEDYLI+Q + + L++ + Sbjct: 541 GHLYIAQPPLYKAERGRRAIYLKDERALEDYLIDQGTEGAVLRLSSGAE-FAGAQLKSLV 599 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKS 649 ++A +++ + +D++ +EQAV++G F+ E+ + LA A RL+ IA++ Sbjct: 600 EEARTFRSILQGLHTRYDRSVVEQAVLAGAFDAEAASRAGEAEVLADMTARRLDAIADEI 659 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E+ W G + R RGV++ +L+ I S ++ ++ E Y +L+ Sbjct: 660 ERGWQGESFEGGYRLSRTLRGVRQVSILDAGLITSQEARRLSERADAFREIYGEPATLMR 719 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 D+ + GP +L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+V++ D Sbjct: 720 KSDETVLHGPVALFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVRVKD 779 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + ADDLF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 VTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 814 >gi|269103823|ref|ZP_06156520.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163721|gb|EEZ42217.1| DNA gyrase subunit B [Photobacterium damselae subsp. damselae CIP 102761] Length = 793 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 401/794 (50%), Positives = 536/794 (67%), Gaps = 10/794 (1%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I VT+ DGS +VS Sbjct: 2 LKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCEDIVVTICEDGSVSVS 61 Query: 78 DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137 D+GRGIPT+LH EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS ++L Sbjct: 62 DDGRGIPTELHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVEL 121 Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197 I R G+I+ + +G+ PL V G + TGT + F PSS+ F+ F Y+ L RLR Sbjct: 122 TIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTGTTIRFWPSSETFTNTTFQYEILAKRLR 180 Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN- 256 ELSFLNS V I L D+R E ++ Y+GGI+AFV +L+R+K P+ Q R++ Sbjct: 181 ELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDG 239 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+EK SKK K + Sbjct: 240 ITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAA 299 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L +L E+P +AK Sbjct: 300 TSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAK 359 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 + K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAG Sbjct: 360 TVCTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAG 419 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLR Sbjct: 420 GSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLR 479 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556 YH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPLY + +GK QY+KD+ Sbjct: 480 YHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDD 539 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 E ++ + + +L + ++ L N + KLI+ + + + Sbjct: 540 EDMQQFQTSLALENAALFTTEGAPAMAGLALENLVGQYNSTMKLIERMSRRYPTLLLNEL 599 Query: 617 VISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIAR 669 V E + + + + LN + N+ V Sbjct: 600 VHQPRLTAEMLSDRAQVEAWVTPVIEALNAKQSGESHYTFDIVVDSENNHFLPKVVVRTH 659 Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729 GV ++ L I S S + + K + +L+ + Sbjct: 660 GVDHEYPLSFELICSKEYSKLADLSEVLNGLLDDSAYVQRGERKQPVASFKEVLEWLNKE 719 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 R+G+S+QRYKGLGEMN QLWETT++P++R ++RV I DA AD+LF+ LMGD+VEPRR Sbjct: 720 SRRGLSLQRYKGLGEMNPDQLWETTMDPESRRMMRVTINDAVAADELFTTLMGDQVEPRR 779 Query: 790 EFIQENSLPSALDI 803 FI+ N+L + LD+ Sbjct: 780 NFIEANALNANLDV 793 >gi|328541628|ref|YP_004301737.1| DNA gyrase subunit B [polymorphum gilvum SL003B-26A1] gi|326411380|gb|ADZ68443.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1] Length = 817 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 482/800 (60%), Positives = 610/800 (76%), Gaps = 5/800 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+AD +TVT Sbjct: 19 QDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADRVTVT 78 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 79 LNADGSVTVTDNGRGIPTDVHATEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 138 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+WL+LRI R G + + F +G + PLV G + GTEVTFLPS + F+ +F Sbjct: 139 VNALSTWLELRIWRAGKEHFIRFRHGDAEAPLVEVGPSNGRKGTEVTFLPSPETFTRIEF 198 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V+I L D+R E + + +FY+GG+EAFV YLDR K PL+++P Sbjct: 199 DFATLEHRLRELAFLNSGVRILLTDRRGVEEKAVELFYEGGLEAFVRYLDRAKHPLVEAP 258 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + RD I+++ A+ WND YHE VLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + S Sbjct: 259 ITVGAERDGITVEAALWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRAALTRQVTGYADSS 318 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N L+ W Sbjct: 319 GLLKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINQALAEW 378 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE+P A+ +V KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP K+EL Sbjct: 379 LEENPARARAVVSKVVEAASAREAARKARELTRRKGALDIASLPGKLADCQERDPAKAEL 438 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALGTGIG+ Sbjct: 439 FLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALGTGIGK 498 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + F+++KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G +YI +PPLY + RG Sbjct: 499 EEFNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQPPLYKVKRG 558 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 +S QY+KD+ +LEDYLI Q L + S V DLR+ ++ A I+ + + Sbjct: 559 QSEQYLKDQTALEDYLIGQGLEDTSL-TLASGEVRMGADLRSVVETARSINAIFDGLHSR 617 Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664 +D+ +EQA I+G N E D A+ +A RL+ +A++ E+ W G ++ ++ Sbjct: 618 YDRAVVEQAAIAGALNPETLHDAAKAAEAAAYIARRLDILADEFERGWTGEARDDGSLVF 677 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV+E ++ + + S ++ + ++E Y SL + I GP +LL Sbjct: 678 RRTVRGVEEVATIDAALLASADARRLDAQAKHLQEIYGKAASLRRKDSETAIRGPQALLA 737 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 T+F+ GRKGIS+QRYKGLGEMN QLWETTL+P+ RSLL+VK+ +A ADD+F++LMGDE Sbjct: 738 TVFAFGRKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVKEADDADDIFTKLMGDE 797 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRREFIQ+N+L LD+ Sbjct: 798 VEPRREFIQDNALSVANLDV 817 >gi|126724511|ref|ZP_01740354.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150] gi|126705675|gb|EBA04765.1| DNA gyrase subunit B [Rhodobacterales bacterium HTCC2150] Length = 805 Score = 929 bits (2402), Expect = 0.0, Method: Composition-based stats. Identities = 451/805 (56%), Positives = 586/805 (72%), Gaps = 4/805 (0%) Query: 1 MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+DN QN Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YE +DN IDE+L G Sbjct: 1 MADNEQNQEDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYECVDNGIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD + VT++ D S +V DNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGG Sbjct: 61 HADFVNVTIHDDNSISVRDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL+LRI R+G + F +G L V G A GTEV FL S+ Sbjct: 121 LHGVGVSVVNALSVWLELRIWRDGKEHYAKFAHGDTAEHLRVVGDANGQKGTEVRFLAST 180 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + FS ++++ TL++RLREL+FLNS V+I L D+R E + +FY+GG++ FV YLDR Sbjct: 181 ETFSNLEYSFKTLENRLRELAFLNSGVRIILKDERPAEHLKSELFYEGGVKEFVKYLDRS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K +++ PI ++G +D+I I++AM WND YHENVL FTNNIPQ+DGGTH++G R ALTR Sbjct: 241 KSSMLEEPIFVRGEKDDIGIEVAMWWNDSYHENVLPFTNNIPQRDGGTHMAGFRGALTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + S +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 301 INSYAQSSGIAKKEKVAFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ LS W EE+P AK+IV K+++A++ R+AAR+AR+LTRRK LD+ L GKL DCSE Sbjct: 361 MNEKLSEWFEENPQLAKMIVGKIVEAALAREAARKARELTRRKTALDVNFLAGKLKDCSE 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K+E+FLVEGDSAGGSA+ GR R QA+LPLRGKILNVERARFD+ML SQEIG L+ Sbjct: 421 KDPSKTEVFLVEGDSAGGSAQTGRDRLTQAVLPLRGKILNVERARFDRMLGSQEIGNLVM 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +P Sbjct: 481 ALGTGIGRDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PL+ ++RGKS Y+KD+ +L+DYL+ Q + + D ++ DL +++A + + Sbjct: 541 PLFKVSRGKSEVYLKDQPALDDYLVAQGVDGAVLKLADGTE-MAGADLVRVVEEARSVRR 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS-IN 658 +++ F ++ + +EQA I+ F + +A +A RLN IA + E+ W G Sbjct: 600 ILQAFPTHYSQHILEQAAIARAFIPGAIDANIQGVADAIAERLNLIALEYERGWQGRPTQ 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + RI RGV+E L+G + S ++ F++ + E Y LI + G Sbjct: 660 DHGIRLARILRGVEEVRTLDGRVMQSGEARKLAEFTDNMVEVYSQPAQLIRKDKITSVNG 719 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SLL I + G KG+S+QRYKGLGEMN QLWETTL+PD R+LL+VKI D + ADD+F+ Sbjct: 720 PSSLLAAILTEGEKGLSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKIDDLADADDIFT 779 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 +LMGD VEPRREFIQ N+L LD Sbjct: 780 KLMGDVVEPRREFIQNNALSVENLD 804 >gi|120596837|ref|YP_961411.1| DNA gyrase subunit B [Shewanella sp. W3-18-1] gi|146291115|ref|YP_001181539.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32] gi|120556930|gb|ABM22857.1| DNA gyrase subunit B [Shewanella sp. W3-18-1] gi|145562805|gb|ABP73740.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32] gi|319424421|gb|ADV52495.1| DNA gyrase, B subunit [Shewanella putrefaciens 200] Length = 805 Score = 929 bits (2401), Expect = 0.0, Method: Composition-based stats. Identities = 397/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVKDDGRGIPVAIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L++ I+R G +YE + +G+ D P+ G A TGTE+ F PS D FS Sbjct: 121 VSVVNALSRKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I LID+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + RD+ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + +Y Sbjct: 238 KEVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L + +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTVVYPTQGAPGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656 + + + + E D+ + L + E Sbjct: 598 LEQRYPTHITNRMLYHPMITNEMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + ++ + ++ Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD S ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805 >gi|330500918|ref|YP_004377787.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01] gi|328915204|gb|AEB56035.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01] Length = 806 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 403/811 (49%), Positives = 545/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 IT+T++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEITITIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R G I+E ++++G+ PL G + TGT++ F PS + Sbjct: 118 HGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVGDT-DGTGTQIHFKPSEE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F++D L RLRELSFLNS V I L D+R+ + Y+GG++AFV +L+ +K Sbjct: 177 TFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEFLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + Q IQ D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 TVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRH 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E+ +KK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEQEGLAKKFKISTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++++Y+ +L + ++ +S L + D + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMDEYMTQSALEDASLHVNENAPGLSGGALEKLVADYRGVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----S 652 + + K E V + E DQ RL + + + Sbjct: 595 TLDRLSRVYPKDLTEHFVYLPRVSVEQLADQSAMQGWLDGFTTRLKAVEKSGQTYNVSLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + V+ + G+ S K + ++ + Sbjct: 655 EDHERHLWLPEVEIKSHGLSNYVTFNRDFFASNDYKTVTVLGEQLNNLLEEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K ++ LD + + K S+QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 715 KKPVSTFKEALDWLMNESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|170718151|ref|YP_001785179.1| DNA gyrase subunit B [Haemophilus somnus 2336] gi|168826280|gb|ACA31651.1| DNA gyrase, B subunit [Haemophilus somnus 2336] Length = 807 Score = 929 bits (2400), Expect = 0.0, Method: Composition-based stats. Identities = 405/811 (49%), Positives = 553/811 (68%), Gaps = 12/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +Y A SI++LKGL+AV+ RP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSENT-TENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CKDIIVTIHADNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L+L I+R+G ++E + G PL V G TGT V F PS Sbjct: 120 HGVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETE-KTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ DF Y+ L RLRELSFLNS V I L+DKR+ R+ Y+GGI+AFV YL+++K Sbjct: 179 IFTNIDFEYEILAKRLRELSFLNSGVSIKLLDKRND--RQDHFHYEGGIKAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q +D+I +++A++WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 TPIHQKIFYFSAEKDDIGVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFRGALTRIL 296 Query: 301 TSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 YVE++ K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEVR+ VES Sbjct: 297 NKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVRAPVESV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++D L +LEE+P +AKIIV K+++A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 357 MSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 417 RDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P LI G +YI +P Sbjct: 477 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIERGHVYIAQP 536 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E ++ + +N +L ++ ++ L I + + K Sbjct: 537 PLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQK 596 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFI-----AEKSEKS 652 +I ++ + ++ + E + + A L N L + K Sbjct: 597 MISRLSFHYPEILLKSLIYQKALTNEMMIDESVVDFWAKSLVNILTDKKISGSSYKYRIV 656 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ + ++++ G+++ + L + N+++ + Sbjct: 657 FNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGER 716 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ ++ + R+G+ +QRYKGLGEMN+ QL+ETT++P+ R++L+V I DA Sbjct: 717 QQSVSSFEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVA 776 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRREFI+ N+L + LDI Sbjct: 777 ADQLFTTLMGDEVEPRREFIEMNALRANLDI 807 >gi|315125115|ref|YP_004067118.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913] gi|315013628|gb|ADT66966.1| DNA gyrase subunit B [Pseudoalteromonas sp. SM9913] Length = 808 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 416/815 (51%), Positives = 555/815 (68%), Gaps = 19/815 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+++DGS +V DNGRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CDDIYVTIHLDGSVSVRDNGRGIPTSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+REG ++E + G+ D PL V G + GTE+ F PS + Sbjct: 116 HGVGVSVVNALSEKLKLTIRREGKLHEQFYTMGVPDAPLAVIGDSE-TNGTEIRFWPSGE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ DF+YD L RLRELSFLNS V I L D+R E + Y+GGI AFV YL+R+K Sbjct: 175 TFTNLDFHYDILAKRLRELSFLNSGVSIILSDER-EENKSDHFKYEGGIRAFVEYLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ + R+ IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPVHKGVFHFTHEREEDGISVEVSMQWNDAFQENIYCFTNNIPQRDGGTHLAGFRSALTR 293 Query: 299 QITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 + +Y+EK +KK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S V Sbjct: 294 TLNNYMEKEGFNKKAKTTSNATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 353 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + + + +L E+PL+AKI+V K++DA+ R+AAR+AR++TRRKG +D+A LPGKLAD Sbjct: 354 EQAMAEKFTEFLLENPLDAKIVVGKIIDAARAREAARKAREMTRRKGAMDLAGLPGKLAD 413 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T Sbjct: 414 CQEKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 473 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG GIG+D ++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G++YI Sbjct: 474 LITALGCGIGRDEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGYIYI 533 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +GK +Y+KD+ +L DYL + +LS DS + L + D Sbjct: 534 AQPPLYKVKKGKQERYIKDDPALVDYLTSLALSNAALYTSDSAEAVDGEALEAIVHDYQN 593 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK-----S 649 K+I+ + T + + + E D+ ++ +L + L E + Sbjct: 594 TVKVIERLKRKYPNTVMNRLIYQSELKKEDLSDEAKVIAWTKELVDDLVARDEDATIFHA 653 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 N +V GV + VL I S + + I + Sbjct: 654 GTEHDTERNLYYPVVNIRQHGVDKAHVLHYDFITSRDYQRIAVTGKNIANIITEGAYIQR 713 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L+ + + ++GI +QRYKGLGEMN +QLWETT++P R +L+V I D Sbjct: 714 GEKTKPVDNFVDALEWLIAESKRGIYIQRYKGLGEMNPNQLWETTMDPSARRMLQVTIED 773 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 A AD LF+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 774 AVAADQLFATLMGDQVEPRREFIETNALRVVNLDV 808 >gi|90019653|ref|YP_525480.1| DNA gyrase subunit B [Saccharophagus degradans 2-40] gi|89949253|gb|ABD79268.1| DNA gyrase subunit B [Saccharophagus degradans 2-40] Length = 808 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 403/814 (49%), Positives = 546/814 (67%), Gaps = 17/814 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ Sbjct: 1 MSE--EQRNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEIVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ + S TVSDNGRGIPT++H EEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 59 CNEIKVVIHPNESVTVSDNGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R G ++E + +G+ PL V G +GT+V F PS++ Sbjct: 118 HGVGVSVVNALSEVLTLTIRRGGQVFEQVYHHGVPQAPLTVIGETE-VSGTQVHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F++D L RLRELSFLNS V+I LID+RS + Y+GG++AFV YL+++K Sbjct: 177 TFTNIEFHFDQLGKRLRELSFLNSGVRIVLIDERSGKE--DVFEYEGGLKAFVGYLNQNK 234 Query: 241 KPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + D + +++A++WND + EN+ C+TNNIPQ+DGGTHL+G R+ALTR Sbjct: 235 NPINKVIHFSTFREEDGVGVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRAALTRN 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIESEGLLKKEKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S +L E+P EAK IV K+++A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 LSKSFSEYLLENPQEAKQIVGKMMEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 415 KDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG F+ KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G +YI +P Sbjct: 475 ALGCGIGAQEFNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK QY+KD+++L +L N ++ +S L + + K+ Sbjct: 535 PLYKIAKGKQEQYLKDDDALTQFLTNAAMETSALHVSAEAPPLSGAQLEALVIEYRKVMS 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFI--AEKSEKSWHG 655 I+ + +E+ + N E +D+ + L +L + A K+ + Sbjct: 595 TIEKLSRLYPDHVLEEMIYLPALNKESLTDKAAVDAWCELLTAKLEVLNAASKTHRYVVN 654 Query: 656 SINNSD-----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 +I N + + +A GV + L S K + + Sbjct: 655 TIENKERHTFIPELTIVAHGVGHKTRLNEDLFGSEDYKSMHKLGETLSGLIEEGAYVAKG 714 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 K ++ LD I + +KG +QRYKGLGEMN QLWETT++P+TR +L+V + DA Sbjct: 715 ERKQPVSTFKEALDWIMAESKKGYGIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDA 774 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD VEPRREFI+ N+L LD+ Sbjct: 775 IGADQIFTCLMGDNVEPRREFIETNALSVANLDV 808 >gi|113461844|ref|YP_719913.1| DNA gyrase subunit B [Haemophilus somnus 129PT] gi|112823887|gb|ABI25976.1| DNA gyrase subunit B [Haemophilus somnus 129PT] Length = 807 Score = 928 bits (2399), Expect = 0.0, Method: Composition-based stats. Identities = 405/811 (49%), Positives = 552/811 (68%), Gaps = 12/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +Y A SI++LKGL+AV+ RP MYIGDTD +GLHHM++EV+DNAIDE+L GY Sbjct: 1 MSENT-TENYGAGSIKVLKGLEAVRTRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CKDIIVTIHADNSVSVQDDGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L+L I+R+G ++E + G PL V G TGT V F PS Sbjct: 120 HGVGISVVNALSDKLQLTIRRQGKVHEQFYHLGDPQEPLSVIGETE-KTGTTVRFWPSPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ DF Y+ L RLRELSFLNS V I L+DKR+ R+ Y+GGI+AFV YL+++K Sbjct: 179 IFTNIDFEYEILAKRLRELSFLNSGVSIKLLDKRND--RQDHFHYEGGIKAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q +D+I +++A++WND Y ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 TPIHQKIFYFSAEKDDIGVEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFRGALTRVL 296 Query: 301 TSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 YVE++ K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEVR+ VES Sbjct: 297 NKYVEENSNKKDKKDIATSGDDAREGLVAIVSVKVPDPKFSSQTKDKLVSSEVRAPVESV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++D L +LEE+P +AKIIV K+++A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 357 MSDYLQEFLEENPNDAKIIVMKIIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 417 RDPALSELYLVEGDSAGGSAKQGRNRQNQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ+P LI G +YI +P Sbjct: 477 ALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQLPELIERGHVYIAQP 536 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E ++ + +N +L ++ ++ L I + + K Sbjct: 537 PLYKVKKGKQEQYIKDDEEMQQFELNLALEGSSLYVNENAPAMNGIALEKLISEYNSVQK 596 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFI-----AEKSEKS 652 +I ++ + ++ + E + A L N L + K Sbjct: 597 MISHLSFHYPEILLKSLIYQKALTNEMMTDESAVDFWAKSLVNILTDKKISGSSYKYRIV 656 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ + ++++ G+++ + L + N+++ + Sbjct: 657 FNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKLGNQLQGLLEKGAYVSRGER 716 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ ++ + R+G+ +QRYKGLGEMN+ QL+ETT++P+ R++L+V I DA Sbjct: 717 QQSVSSFEQAIEWLTKESRRGLIIQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKDAVA 776 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD LF+ LMGDEVEPRREFI+ N+L + LDI Sbjct: 777 ADQLFTTLMGDEVEPRREFIEMNALRANLDI 807 >gi|254784277|ref|YP_003071705.1| DNA gyrase subunit B [Teredinibacter turnerae T7901] gi|237686033|gb|ACR13297.1| DNA gyrase, B subunit [Teredinibacter turnerae T7901] Length = 808 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 399/814 (49%), Positives = 549/814 (67%), Gaps = 17/814 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ Sbjct: 1 MSDT--EHNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I ++ D S +VSDNGRGIPT++H EEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 59 CSEILAVIHPDESISVSDNGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS LKL I+R G ++E + +G+ PL V G TGTEV F PS++ Sbjct: 118 HGVGVSVVNALSSKLKLTIRRGGKVWEQVYKHGVPQAPLSVIGETE-LTGTEVHFWPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+++ L RLRELSFLNS V+I L+D+RS + Y+GG++AFV +L+++K Sbjct: 177 TFNNIEFHFEHLAKRLRELSFLNSGVRIRLLDERSGKE--EVYEYEGGLKAFVEFLNQNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + Q D + +++A++WNDG+ EN+ C+TNNIPQ+DGGTHL+G R+ALTR Sbjct: 235 NPINKVMHFTAQREDDGVGVEVALQWNDGFQENIYCYTNNIPQRDGGTHLAGFRAALTRG 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEREGIGKKEKVATTGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K+++A+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGSAFNDYLLENPQEAKSVVGKMIEAAKAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGRSR+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRSRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G ++I +P Sbjct: 475 ALGCGIGAQEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHIFIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I++GK +Y+KD+++L+ +L N +L + +S L + + D K Sbjct: 535 PLYKISKGKHEEYLKDDDALQQFLTNAALEQSKLHLSADAPALSGEQLESLVKDYRKGIA 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKS----- 652 +I + + Q + E +D+ + KL RL+ + +S+ Sbjct: 595 VIDKLSRLYPNEVLHQMLYLPALQAESFTDEALVTEWNDKLQLRLDVLNAESKTHRFISV 654 Query: 653 --WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + +++ A GV L S + ++ + Sbjct: 655 VKENKERGEFTPVIELTAHGVAHTIRLSSDLFSSDDYQVITALGEKLNGLIEEGAFVAKG 714 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ LD I + +KG ++QRYKGLGEMN QLWETT++P+TR +L+V + DA Sbjct: 715 ERTREVNNFAEALDWIMNESKKGYNIQRYKGLGEMNPEQLWETTMDPETRRMLQVTVEDA 774 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 775 IAADQIFTTLMGDQVEPRRDFIETNALAVANLDV 808 >gi|254500251|ref|ZP_05112402.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11] gi|222436322|gb|EEE43001.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11] Length = 820 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 483/805 (60%), Positives = 604/805 (75%), Gaps = 5/805 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+AD Sbjct: 17 EAENGAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAD 76 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +TVTLN DGS TVSDNGRGIPTDLH EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 77 HVTVTLNPDGSVTVSDNGRGIPTDLHSEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 136 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L LRI R + M+F +G PL V G A GTEVTFLPSS+ F Sbjct: 137 VGVSVVNALSTKLDLRIWRNDQEHFMTFAHGDAVGPLEVVGPANGKKGTEVTFLPSSETF 196 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +F++ TL+HRLREL+FLNS +I L DKR E +FY GG+EAFV YLDR K P Sbjct: 197 TKTEFDFGTLEHRLRELAFLNSGARIILTDKRGVEDVVEELFYDGGLEAFVRYLDRAKHP 256 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L+++PI ++ +D I+++ AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Sbjct: 257 LIETPIAVRAEKDGITVEAAMWWNDSYHEQVLCFTNNIPQRDGGTHLAGFRGALTRQVTG 316 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E + KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ ++ Sbjct: 317 YAESTGLMKKEKVSLSGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVENLISQ 376 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEE+P AK IV KV++A+ R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD Sbjct: 377 TLSEWLEENPAPAKTIVSKVVEAASAREAARKARELTRRKGALDVASLPGKLADCQERDA 436 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+ELFLVEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS EIGTLITALG Sbjct: 437 SKAELFLVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSNEIGTLITALG 496 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG++ F+I KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI NG++YI +PPLY Sbjct: 497 TGIGKEEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIENGYVYIAQPPLY 556 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + RG+S QY+KD+E+LE+YLI Q + + V + DLR ++ A I + Sbjct: 557 KVKRGQSEQYLKDQEALENYLIAQGSDDTSLKIA-NGEVRTGQDLRQVVETARAISDIFD 615 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGS-INN 659 + +++ +EQA I+G N E ++ A+ +A R++ +A++ E+ W G ++ Sbjct: 616 GLHSRYNRDVVEQAAIAGALNAEILEDQGKAEEAATYIARRMDILADEFERGWTGEARDD 675 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ R+ RGVQE ++ + + S ++ + + E Y L +I GP Sbjct: 676 GSLVFARMVRGVQEVATIDAALLGSTDARRLAAHAAHLNEVYGKAAVLQRKDVPTEIRGP 735 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +LL IF+ G+KGIS+QRYKGLGEMN QLWETTL+P+ RSLL+VK+ +A ADD+F++ Sbjct: 736 RALLQHIFAFGQKGISLQRYKGLGEMNPEQLWETTLDPNVRSLLQVKVREADDADDIFTK 795 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGDEVEPRREFIQ+N+L LDI Sbjct: 796 LMGDEVEPRREFIQDNALAVANLDI 820 >gi|332304390|ref|YP_004432241.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171719|gb|AEE20973.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 806 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 409/812 (50%), Positives = 553/812 (68%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MAEENK---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V D+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CTNINVKIHTDGSVSVKDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L++ I+R G ++E + +G+ PL V G + + +GT + F PS + Sbjct: 118 HGVGVSVVNALSRRLQILIRRAGKVHEQEYQHGVPQKPLEVIGES-DTSGTSIRFWPSEE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL+++K Sbjct: 177 TFTGIEFHYDILAKRLRELSFLNSGVSIILEDERDGKR--DHFMYEGGIQAFVEYLNQNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q RD+ IS+++A++WND + ENV CFTNNIPQ+DGG+HL+G R ALTR Sbjct: 235 TPVHQQVFHFNSERDDGISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +++EK +KK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 295 LNAFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAVETV 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ +L E+P +KII+ K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC E Sbjct: 355 MGEKLNEFLLENPSASKIIINKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 415 KDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +P Sbjct: 475 ALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +GK QY+KD++SL YL +L + +S L ++ K Sbjct: 535 PLYKTKKGKQEQYLKDDDSLTKYLTAIALDNASIHVNEEAPGLSGPSLEKLVNQYQNAMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQE------INVSLASKLA-NRLNFIAEKSEKS 652 +IK + + V S V + + Q+ + S L N ++ + E Sbjct: 595 MIKRVSRVMPEVILTSLVYSKVISLQDLQDEASLNVVAKSFTDSLTRNEVDGATYRYEVR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + NN I + G+ ++ ++ I S R + I + N Sbjct: 655 VNSERNNYYIALIIRLHGIDTEYKIDQEFIESIEYTRLRELNEAINGLIEEGGYVKRNDK 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 I LD + + +KG +QRYKGLGEMN QLWETT++P +R +L+VK+ DA Sbjct: 715 VKPIFSFAEGLDWLMAESKKGQYIQRYKGLGEMNPEQLWETTMDPGSRRMLQVKVEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD VEPRR FI++N+L LD+ Sbjct: 775 ADQLFTTLMGDHVEPRRAFIEDNALRVANLDV 806 >gi|329894833|ref|ZP_08270633.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088] gi|328922727|gb|EGG30061.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088] Length = 805 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 402/809 (49%), Positives = 543/809 (67%), Gaps = 14/809 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N +YD+ SI +LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSNQNYDSSSITVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + ++ D S TVSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVG Sbjct: 61 EIVVHPDESITVSDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L L ++R+G ++E + +G+ PL V G +TGT V F PS + FS Sbjct: 120 VSVVNALSSSLTLTVRRQGKVFEQHYQHGVPQAPLAVVGET-QNTGTTVRFSPSPETFSN 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F++D L RLREL+FLNS V I L D+RS E T Y GG+ AFV YL+R+K P+ Sbjct: 179 IEFHFDILAKRLRELAFLNSGVNIKLTDERSGES--ETYNYDGGLGAFVDYLNRNKTPIN 236 Query: 245 QSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +++++A++WND + EN+LC+TNNIPQKDGGTHL+G R+ALTR + S Sbjct: 237 KLFHFANEADEETGVAVEVALQWNDSFQENLLCYTNNIPQKDGGTHLAGFRAALTRGLNS 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y+E+ KK K GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE ++ Sbjct: 297 YIEREGLGKKAKIGTTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKTAVEQAMSA 356 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +L E+P +AK IV K+LDA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+DP Sbjct: 357 RLNDYLLENPGDAKTIVGKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDP 416 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SE++LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML S E+GT++TALG Sbjct: 417 ALSEIYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEVGTIVTALG 476 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG++ FD KLRYH IIIMTDADVDG+HIRTLLLTFFFR M LI G +YI +PPLY Sbjct: 477 CGIGKEEFDAEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRHMRELIERGHIYIAQPPLY 536 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I++GK QY+KD+++L +L +L + + I+ L ++ +DK I Sbjct: 537 KISKGKQSQYLKDDDALNAFLTQSALEDAALITDPEAPPIAGAALEALVEQYRAVDKTIS 596 Query: 603 DFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEK-----SWHG 655 + + + V S V ++ ++ + L++RL + + Sbjct: 597 RLARLYTHDVLWRLVYSEVLTVDAMANEQSVQKFGADLSDRLQRYSVNGSEYSVYVRKDQ 656 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N +VK GV+ + VL S + + + ++ Sbjct: 657 ERNLYLPVVKFYNHGVEYETVLGRDFFGSAEYRQLTALGATLGDLIGPEGAIRRGDKSQP 716 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + L + + KG S+QRYKGLGEMN QLWETT++P+TR +L+V I DA AD Sbjct: 717 VREFTEALAWLMTEAAKGYSIQRYKGLGEMNPEQLWETTMDPETRRMLQVTIEDAIMADQ 776 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGD+VEPRREFI++N+L LD+ Sbjct: 777 MFTTLMGDQVEPRREFIEQNALNVANLDV 805 >gi|110832865|ref|YP_691724.1| DNA gyrase subunit B [Alcanivorax borkumensis SK2] gi|110645976|emb|CAL15452.1| DNA gyrase, subunit B [Alcanivorax borkumensis SK2] Length = 805 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 409/808 (50%), Positives = 551/808 (68%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MAEKKYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S ++ DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVG Sbjct: 61 KVVIHPDESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I+R G ++E + +G+ PL V G + +GT V F PS + FS Sbjct: 121 VSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V+I L+D+RS + Y+GG+ AFVSYL+ +K PL Sbjct: 180 IKFHYDILAKRLRELSFLNSGVRIHLMDERSGDE--DVFEYEGGLSAFVSYLNTNKTPLN 237 Query: 245 QSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q + D I++++AM+WND Y EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY Sbjct: 238 QVFHFNYEREEDGIAVEVAMQWNDSYQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K KK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + D Sbjct: 298 MDKEGFLKKEKASPSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDL 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +L E+P EA+ IV+K++DA+ RDAAR+AR++TRRKG LDIA LPGKLADC ++DP Sbjct: 358 FQDYLLENPGEARSIVQKIIDAARARDAARKAREMTRRKGALDIAGLPGKLADCQQKDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG Sbjct: 418 LSELYIVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++I KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PPLY Sbjct: 478 GIGRDEYNIEKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK Y+KD+ ++E+YL +L + + IS L I + + K++ Sbjct: 538 VKKGKQETYLKDDPAMEEYLTTLALDKTGLYPGNDAPPISGEPLAKLIAEYRGVMKIVDR 597 Query: 604 FYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSE-----KSWHGS 656 + +EQ + + +D+ + L R++ I + ++ Sbjct: 598 QSRVFPEEVLEQMIYMPSLSESSLNDEAAMMQWCETLGKRVDAITDATQTFTITAQRDEE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 V+ +A GV ++ + + S + + +E + + I Sbjct: 658 RGLYLPRVQVLAHGVPREYKVTLDFLQSPDYQKIKALGETLEGLLAEDAYIQRGESQRPI 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + + R+G S QRYKGLGEMNA QLWETT++P++R +L+V I DA AD + Sbjct: 718 RHFAEALDWLMAQARRGTSFQRYKGLGEMNADQLWETTMDPESRRMLQVTIEDAIAADQI 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+V+PRR FI+ N+L LD+ Sbjct: 778 FTCLMGDDVDPRRRFIESNALQVSNLDV 805 >gi|94502204|ref|ZP_01308699.1| DNA gyrase subunit B [Oceanobacter sp. RED65] gi|94425665|gb|EAT10678.1| DNA gyrase subunit B [Oceanobacter sp. RED65] Length = 808 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 410/813 (50%), Positives = 540/813 (66%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MST---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +VSDNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEIRVVIHPDESISVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ LK+ I+R G ++E S+ G+ D PL G+ +GT + F PS + Sbjct: 118 HGVGVSVVNALSNKLKMTIRRAGKVWEQSYTMGVPDAPLAEVGNTE-TSGTTIHFHPSPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ FNYD L RLRELSFLNS V+I L D+RS RE ++GG+++FV YL+ +K Sbjct: 177 TFTNIHFNYDHLAKRLRELSFLNSGVRIVLKDERSD--REEVFEFEGGLKSFVEYLNTNK 234 Query: 241 KPLMQSPIR---IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 L D I +++AM+WND + EN+ CFTNNIPQ+DGGTHL+G R ALT Sbjct: 235 TALNDIFHFQLEGDNREDGIGVEVAMQWNDSFSENIYCFTNNIPQRDGGTHLAGFRGALT 294 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + SY+E+ +KK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 295 RSLNSYIEREGLAKKAKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVE 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 ++ + +L E P +AK IV K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC Sbjct: 355 QEMSRSFNDFLLEQPQQAKEIVSKMMDAARAREAARKAREMTRRKGALDVAGLPGKLADC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP +SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTL Sbjct: 415 QEKDPSQSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTL 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP +I G ++I Sbjct: 475 ITALGCGIGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHVFIA 534 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I RGK+ QY+KD+ +LE+YL + +L IS + L + +++ ++ Sbjct: 535 QPPLYKIKRGKNEQYIKDDMALEEYLTSNALDGAALYVNPQAPAISGDRLEDIVNNFRQV 594 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRL-----NFIAEKSE 650 I + + ++ + + ++ + +L +R N E Sbjct: 595 MHDIDRLSRVYPQEVLKAMIYISTLTQDDLKDRSKVEAWCEELQSRFGNPRGNDTHVVLE 654 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + VK I + + ++L S K F RI + Sbjct: 655 IKEDSERHIYLPDVKVINHSIPKDYILTHDFFDSPVYKAISAFGERIHGMLDDGAYVQRG 714 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 K L + RKG S+QRYKGLGEMN QLWETT++P+ R +LRV I DA Sbjct: 715 ERKQPADSFEGALAWLMGEARKGYSIQRYKGLGEMNPEQLWETTMDPEARRMLRVTIEDA 774 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGDEVEPRR+FI+ N+L LD Sbjct: 775 VAADQIFTTLMGDEVEPRRDFIESNALLVDNLD 807 >gi|91791373|ref|YP_561024.1| DNA gyrase, B subunit [Shewanella denitrificans OS217] gi|91713375|gb|ABE53301.1| DNA gyrase subunit B [Shewanella denitrificans OS217] Length = 805 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 400/808 (49%), Positives = 543/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T++ DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHTDGSVSVQDDGRGIPVAIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I+R G IYE + G+ D P+ G A TGTE+ F PS + F+ Sbjct: 121 VSVVNALSHKLQLTIRRGGKIYEQFYTMGVPDAPIAAIGDA-IKTGTEIRFWPSGETFTN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F++D L R+RELSFLNS V I LID+R + Y+GGI AFV+YL+R+K P+ Sbjct: 180 LEFHFDILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVTYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y Sbjct: 238 KDVFHFAHEREDGITVEVAMQWNDGYQENIYCFTNNIPQRDGGTHLAGFRGALTRNLNTY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E+ +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 298 MEREGFNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQ 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D +D K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYDPEKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L +YL Q+L ++ L + +++ +I Sbjct: 538 VKKGKQEQYLKDEPALTEYLTTQALDGTRIYPTQGAPGMTGEPLERLVAQYREVETIIAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL-----NFIAEKSEKSWHGS 656 + + + + D+ + ++ L N + + Sbjct: 598 LEKRYPSIVLNRMLYHPEVTGAMLADETQMKAWCAEFVADLIELETNGVIYDMVTEFDME 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ +++ S + ++ + ++ Sbjct: 658 RKVYLPKMVIRKHGIDTEYLFGYDFFHSLDYQRIAKLGAALDGMVEEGGYVQRGEKVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD + S ++G+ +QRYKGLGEMN QLWETT++P+TR +LRV I DA AD L Sbjct: 718 ETFLEALDWMISEAKRGLYIQRYKGLGEMNPEQLWETTMDPETRRMLRVTIEDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTTLMGDQVEPRREFIEANALNVANLDV 805 >gi|197286953|ref|YP_002152825.1| DNA gyrase subunit B [Proteus mirabilis HI4320] gi|227354806|ref|ZP_03839223.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906] gi|194684440|emb|CAR46165.1| DNA gyrase subunit B [Proteus mirabilis HI4320] gi|227165124|gb|EEI49955.1| DNA gyrase subunit B [Proteus mirabilis ATCC 29906] Length = 804 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 410/806 (50%), Positives = 554/806 (68%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY D I V Sbjct: 2 SNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCDEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHSDNSVSVRDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS L+L I R+G I++ + +G+ D+ L V G + +GT V F PS D F Sbjct: 122 VVNALSEKLELTIHRDGKIHQQIYRSGVPDDRLKVIGET-DKSGTFVRFWPSLDTFKGET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F YD L RLRELSFLNS V I LIDKR + RE Y+GGI+AFV YL R+K P+ Q Sbjct: 181 EFQYDILAKRLRELSFLNSGVSIRLIDKR--DNREDHFHYEGGIKAFVEYLSRNKTPIHQ 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++AM WNDG+ ENV CFTNNIPQ+DGGTHL G R+A+TR + +Y++ Sbjct: 239 NVFYFSTEKDGIGVEVAMLWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNNYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N+ L Sbjct: 299 KEGFNKKSKISATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLV 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADCSERDP S Sbjct: 359 EYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCSERDPAFS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLASQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G ++I +PPLY + Sbjct: 479 GRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHIFIAQPPLYKVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KD++++++YL++ +L + + L + D K+I+ Sbjct: 539 KGKQEQYIKDDDAMDEYLMSIALDGAALYVSEHAPAMHGAQLEKLVVDYHAAHKIIRRME 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SWHGSIN 658 + + + V + + S L NRLN E+S + + Sbjct: 599 RLYPLSMLNSLVYHSTLTEDDLSDKAKVEEWMSGLVNRLNNAEEQSSTYSYTITQNEENR 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +++ G+ + L+ I S + + I + + I+ Sbjct: 659 LFEPVLRIRTYGIDTDYKLDYDFIHSSEYQRITNLGDIIGNLIEEGAYIERGERRQAISS 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + R+G+++QRYKGLGEMN QLWETT+NPDTR +++V + DA D+LF+ Sbjct: 719 FEEALEWLTKESRRGLAVQRYKGLGEMNPEQLWETTMNPDTRRMMQVTVKDAIATDELFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 779 TLMGDAVEPRRAFIEENALKAENIDI 804 >gi|49474867|ref|YP_032908.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1] gi|49237672|emb|CAF26857.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1] Length = 810 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 488/811 (60%), Positives = 614/811 (75%), Gaps = 9/811 (1%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD ++ Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+ Sbjct: 1 MSDEITSQMEGDDYGAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A ++ VTL+ DGSC+V DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKV Sbjct: 61 LAGHATLVNVTLHADGSCSVRDNGRGIPTDIHPTEGVSAAEVIMTQLHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS WL+LRI+R G I+EMSF +G+ D PL + G G ++G+E+ FL Sbjct: 121 SGGLHGVGVSVVNALSVWLQLRIRRNGKIHEMSFTHGVADAPLKIVGDCGKESGSEIRFL 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R + + + + Y+GG+ FV Y+ Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVHILLVDQRHADIKSVELHYEGGLTEFVKYI 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D+ KK L+ PI I +D +++++A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL Sbjct: 241 DQSKKALLDHPIYITSEKDGMNVEVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQI Y E S KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRQINGYAESSGIVKKEKVNLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ VN+GLSAWLEEHP EAKI+ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLAD Sbjct: 361 ENLVNEGLSAWLEEHPNEAKIVTSKVVEAAAAREAARKARELTRRKGALDITSLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS IGT Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY +TRGKS QY+K+E + E++LI+ L E V + DLR +DA Sbjct: 541 AQPPLYKVTRGKSFQYIKNEAAFEEFLIDTGLEETTLELST-GEVRAGADLRQLAEDARV 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654 + +L+ + +++ +EQA I G FN E+ E A +A+RL+ IA+ E+ W+ Sbjct: 600 LRQLLNGLHTRYNRNIVEQAAIVGAFNPEAFATPEKAKKTADNVASRLDLIADDMERGWN 659 Query: 655 GSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 G N D+ +RI RGV++ L+ I S ++ S + E Y + L Sbjct: 660 GEFTPNGDLYCERILRGVKDVITLDAGLINSVDARQIDRISQNLMETYSSPPLLHRKDKS 719 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +I GP SLL++IF+ G+KGI++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ A Sbjct: 720 ERILGPMSLLESIFTNGKKGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDATDA 779 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LFSRLMGDEVEPRR FIQ+N+L LDI Sbjct: 780 DSLFSRLMGDEVEPRRAFIQDNALSVANLDI 810 >gi|90420488|ref|ZP_01228395.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1] gi|90335216|gb|EAS48969.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1] Length = 811 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 484/806 (60%), Positives = 614/806 (76%), Gaps = 5/806 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + N Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 7 TDPLANPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 +TVTLN +GSCTV+DNGRGIPTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 67 THVTVTLNPEGSCTVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L ++I+R+G I+EMSF +G+ D L VTG AG++TGT +TFLPS+D Sbjct: 127 GVGVSVVNALSVKLSMKIRRKGKIHEMSFTHGVPDGSLEVTGDAGDETGTAITFLPSTDT 186 Query: 182 FS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F V +F+Y TL+HRLREL+FLNS V+I L DKR + + +FY+GG+EAFV YLDR + Sbjct: 187 FQGVTEFDYGTLEHRLRELAFLNSGVRIILTDKRHADEKVTELFYEGGLEAFVRYLDRAR 246 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KPL+ PI + G +D I ++ A+ WND Y+E+VLCFTNNIPQ+DGGTH++G R LTRQ+ Sbjct: 247 KPLIPEPIVLYGEKDGIVVEAALWWNDSYNESVLCFTNNIPQRDGGTHMAGFRGGLTRQV 306 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 T Y E S K++K ++ GDDCREG + VLS+K+PDP+FSSQTK+KLVSSEVR VVES V Sbjct: 307 TGYAETSGALKREKVTLTGDDCREGLSCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLV 366 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ LS W EEHP E K+++ KV++A+ R+AAR+ARDLTRRKG LDI SLPGKLADC ER Sbjct: 367 NETLSTWFEEHPQEGKVVIAKVVEAASAREAARKARDLTRRKGALDITSLPGKLADCQER 426 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP KSE+F+VEGDSAGGSAK RSR+NQAILPLRGKILNVERARFD+ML S +IGTLITA Sbjct: 427 DPAKSEIFIVEGDSAGGSAKGARSRKNQAILPLRGKILNVERARFDRMLGSDQIGTLITA 486 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT IG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G++YI +PP Sbjct: 487 LGTSIGKDEFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYIYIAQPP 546 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY +TRGK QY+KDE++LE+YLI L + V + DLR ++DAL++ ++ Sbjct: 547 LYKVTRGKQSQYLKDEKALENYLIEGGLDDAGL-TLAHGEVRTGRDLRGVVEDALQVRQV 605 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSIN 658 + + +D++ IEQA I G + E + +A ++A RL+ +AE++E+ W G Sbjct: 606 MSSLHSRYDRSVIEQAAIVGALSPEMADDAAKGPQMAQRIAERLDDVAEETERGWSGEAV 665 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + R RGV E ++ + I S + R+ E Y + L + ++TG Sbjct: 666 DGGYRLMRTVRGVSEVQTIDAALINSGDGLQLNRLAGRLAEIYQGLPVLRRRDTERELTG 725 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P LL +F +GRKG+++QRYKGLGEMN QLWETTL+P+ R+L+ VKI DA+ AD LFS Sbjct: 726 PLELLTAVFEVGRKGLTLQRYKGLGEMNPEQLWETTLDPEARTLVMVKINDATDADQLFS 785 Query: 779 RLMGDEVEPRREFIQENSL-PSALDI 803 RLMGDEVEPRREFIQE++L + LDI Sbjct: 786 RLMGDEVEPRREFIQEHALQVANLDI 811 >gi|269799056|gb|ACZ43806.1| DNA gyrase subunit B [Moritella viscosa] gi|269799060|gb|ACZ43808.1| DNA gyrase subunit B [Moritella viscosa] Length = 805 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 407/808 (50%), Positives = 543/808 (67%), Gaps = 14/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I R G I+ ++ +G+ D P+ TG + TGTE+ F PS + F+ Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHETFTN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV YL+ +K P+ Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPIN 238 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y Sbjct: 239 KDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 298 Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 +EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +L E+P EA +V K++DAS R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP Sbjct: 359 KLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK +Y+KD+ L YL +L + I L + ++ KI+ L+ Sbjct: 539 KMKKGKQERYIKDDADLTQYLTTIALDDAGLFVNADAPAIRGAALEDLVNGYRKIESLMG 598 Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEKSWHG 655 + K F + + V E D+ + A +L L + + Sbjct: 599 KLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARVAQDE 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ G+ + S I + + Sbjct: 659 ESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGEKSRE 716 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 +T L+ + + ++G +QRYKGLGEMN SQLWETT++P+TR +L+V+I DA AD Sbjct: 717 VTNFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRMLQVRIEDAVAADQ 776 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 LF+ LMGD VEPRREFI+EN+L LD Sbjct: 777 LFTTLMGDHVEPRREFIEENALKVANLD 804 >gi|149375632|ref|ZP_01893401.1| DNA gyrase, B subunit [Marinobacter algicola DG893] gi|149360034|gb|EDM48489.1| DNA gyrase, B subunit [Marinobacter algicola DG893] Length = 804 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 398/807 (49%), Positives = 532/807 (65%), Gaps = 11/807 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y++ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ I Sbjct: 1 MSESNYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV DNGRGIP DLHKEEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 GVIIHPDESVTVRDNGRGIPVDLHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L L I+R+G +YE ++ NG+ PL V G + +GT+V F+PS + F+ Sbjct: 121 VSVVNALSSSLTLTIRRDGKVYEQTYNNGVPKAPLDVVGDT-DASGTKVHFIPSPETFTS 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F++D L RLREL+FLNS V+I L D+RS + Y+GG+ AFV +L+ +K P+ Sbjct: 180 IEFHWDILAKRLRELAFLNSGVRIRLQDERSGKE--EVFEYEGGLRAFVEHLNSNKTPIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I+ D I++++AM+WND + EN+ FTNNIPQ+DGGTHL+G R+ALTR + +Y+ Sbjct: 238 RVFHFIKEREDGIAVEVAMQWNDAFQENIYTFTNNIPQRDGGTHLAGFRAALTRSLNNYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E KK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 EHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L+E P EAK+IV K+++A+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP Sbjct: 358 ADFLQEQPSEAKLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G Sbjct: 418 SELFIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F+ KLRYH +IIMTDADVDG+HIRTLLLTF FRQM +I G ++I PPLY + Sbjct: 478 IGREEFNPEKLRYHSLIIMTDADVDGSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKV 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK QY+KDE++ E YL +L I + L + D + +I Sbjct: 538 KRGKQEQYLKDEKAKEAYLTQTALEGAQLYVNPEAPAIKDSALETMVKDYQAVMAMIDRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK-----SWHGSI 657 + ++Q + + E +E ++L + L K Sbjct: 598 SRAYPAKVLQQMLDNVTLKPEHLKEEAEVARWVARLGDGLQLDTRTGTKYTFSVEKDTER 657 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N V G+ V S ++ + K + Sbjct: 658 NLYLPKVVIYVHGIPHDHVFSHEFFESSSYAAIARMGETLDGLIEDGAYIQRGERKQAVL 717 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + ++G+++QRYKGLGEMN QLWETT++P+TR +++V I DA AD +F Sbjct: 718 SYEGALDWLMKEAQRGLNIQRYKGLGEMNPEQLWETTMDPETRRMMKVTIEDAIAADQIF 777 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR FIQ N+L LD+ Sbjct: 778 TTLMGDDVEPRRLFIQSNALEVTNLDV 804 >gi|152998559|ref|YP_001364240.1| DNA gyrase subunit B [Shewanella baltica OS185] gi|160873130|ref|YP_001552446.1| DNA gyrase subunit B [Shewanella baltica OS195] gi|217971220|ref|YP_002355971.1| DNA gyrase subunit B [Shewanella baltica OS223] gi|151363177|gb|ABS06177.1| DNA gyrase, B subunit [Shewanella baltica OS185] gi|160858652|gb|ABX47186.1| DNA gyrase, B subunit [Shewanella baltica OS195] gi|217496355|gb|ACK44548.1| DNA gyrase, B subunit [Shewanella baltica OS223] gi|315265355|gb|ADT92208.1| DNA gyrase, B subunit [Shewanella baltica OS678] Length = 805 Score = 926 bits (2394), Expect = 0.0, Method: Composition-based stats. Identities = 398/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L++ I+R G +YE + +G+ D P+ G A TGTE+ F PS D FS Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L I +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656 + + + + E D+ + L + E Sbjct: 598 LEQRYPTHITNRMLYHPMITNEMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + ++ + ++ Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD S ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805 >gi|126172261|ref|YP_001048410.1| DNA gyrase subunit B [Shewanella baltica OS155] gi|125995466|gb|ABN59541.1| DNA gyrase subunit B [Shewanella baltica OS155] Length = 805 Score = 925 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 398/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L++ I+R G +YE + +G+ D P+ G A TGTE+ F PS D FS Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I LID+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLIDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L I +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656 + + + + + D+ + L + E Sbjct: 598 LEQRYPTHITNRMLYHPMITNDMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + ++ + ++ Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD S ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805 >gi|304412708|ref|ZP_07394311.1| DNA gyrase, B subunit [Shewanella baltica OS183] gi|307305827|ref|ZP_07585573.1| DNA gyrase, B subunit [Shewanella baltica BA175] gi|304348918|gb|EFM13333.1| DNA gyrase, B subunit [Shewanella baltica OS183] gi|306911320|gb|EFN41746.1| DNA gyrase, B subunit [Shewanella baltica BA175] Length = 805 Score = 925 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 397/808 (49%), Positives = 540/808 (66%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+T+++DGS +V D+GRGIP +H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L++ I+R G +YE + +G+ D P+ G A TGTE+ F PS D FS Sbjct: 121 VSVVNALSKKLQMTIRRAGKVYEQFYTHGVPDAPIKEIGDAT-KTGTEIRFWPSEDTFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+++ L R+RELSFLNS V I L+D+R + Y+GGI AFV YL+R+K P+ Sbjct: 180 VEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN--EFFKYEGGISAFVDYLNRNKTPVN 237 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDGY EN+ CFTNNIPQ+DGGTHL G RSALTR + SY Sbjct: 238 KDVFHFMQEREDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLVGFRSALTRNLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E +KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE + + Sbjct: 298 MENEGYNKKGKTSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQTMGEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+ LPGKLADC E+DP Sbjct: 358 LNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPG 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPL+ Sbjct: 478 GIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KDE +L YL Q+L I +S L + +++ ++ Sbjct: 538 VKKGKQEQYLKDEPALTQYLTTQALDGTIVYPTQGAIGMSGEPLERLVTQYREVEAIVAR 597 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKS-----EKSWHGS 656 + + + + + D+ + L + E Sbjct: 598 LEQRYPTHITNRMLYHPMITNDMLADEGKMKEWIDAFIHELVEMESSGVLYSAEPILDPE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + G+ ++ S + ++ + ++ Sbjct: 658 RKVYLPKITIRKHGIDTNYLFTYDFFQSSDYQRIGKLGAALDGMIEEGGYVQRGERVKEV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD S ++G+ +QRYKGLGEMN QLWETT++P++R +L+V I DA AD L Sbjct: 718 GSFLEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805 >gi|26986758|ref|NP_742183.1| DNA gyrase subunit B [Pseudomonas putida KT2440] gi|148545263|ref|YP_001265365.1| DNA gyrase subunit B [Pseudomonas putida F1] gi|24981349|gb|AAN65647.1|AE016191_4 DNA gyrase, subunit B [Pseudomonas putida KT2440] gi|148509321|gb|ABQ76181.1| DNA gyrase subunit B [Pseudomonas putida F1] gi|313496421|gb|ADR57787.1| GyrB [Pseudomonas putida BIRD-1] Length = 806 Score = 925 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 403/811 (49%), Positives = 546/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD+E++E+Y+ +L + +S +S L +++ + K Sbjct: 535 PLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E V E D + + ++ RLN +A + Sbjct: 595 TLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAQFQARLNSSQKSGLAYNASLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + ++ + Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLSSLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|237806780|ref|YP_002891220.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187] gi|237499041|gb|ACQ91634.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187] Length = 805 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 426/812 (52%), Positives = 541/812 (66%), Gaps = 16/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSENT----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVMDNSIDETLAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I ++ DGS +V DNGRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CTDIVARIHEDGSVSVRDNGRGIPVDMHKEEGRSAAEVIMTILHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R GNIY+ ++ G D PL + G TGTE+ F PS Sbjct: 117 HGVGVSVVNALSDKLLLTIQRNGNIYQQTYFLGEPDAPLAIIG-TCEGTGTEIRFWPSLS 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS F Y+ L R RELSFLNS V I LID+R + RE Y+GGI AFV YL+++K Sbjct: 176 IFSDVTFRYEILARRFRELSFLNSGVSIRLIDER--DGREDHFHYEGGIRAFVEYLNQNK 233 Query: 241 KPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q D IS+++AM+WND Y ENV CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 234 TPIHQKAFYFDLAREDGISVEVAMQWNDAYQENVYCFTNNIPQRDGGTHLAGFRSALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y++K SKK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 294 LNTYMDKEGYSKKAKTSASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAVEQA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L +L E+P EAKIIV K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 354 MGEKLDEYLLENPGEAKIIVGKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 414 RDPALSELYLVEGDSAGGSAKQGRNRKYQAILPLKGKILNVEKARFDKMISSQEVGTLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D ++ +K+RYH +IIMTDADVDGAHIRTLLLTFF+RQMP +I G++YI +P Sbjct: 474 ALGCGIGRDEYNPDKMRYHNVIIMTDADVDGAHIRTLLLTFFYRQMPEIIERGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KDEESL +Y +L DS IS L + + Sbjct: 534 PLYKVKKGKQEQYIKDEESLLEYQTTLALDGAELYVNDSAPAISGAQLEKMVLEYRTAQH 593 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----S 652 LI + ++Q +I V E D+ + ++L + L+ + Sbjct: 594 LITRLARRLPEAVLQQLLILPVLTTEALKDEAQAKAWVAQLQHNLDEHGNNGSQYTLSVH 653 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 H + GV++ + L + S + +I L Sbjct: 654 RHAEHGVYLPQILLRQHGVEKHYQLGFEFLNSPEYQQIVNIGQQITNLIEPTGFLKRGEK 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +T L + G++G+ +QRYKGLGEMN QLWETT++P TR +L+V I D Sbjct: 714 VRPVTSFEEALQILLDEGKRGLYIQRYKGLGEMNPEQLWETTMDPMTRRMLQVTIEDGMA 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD VEPRR FI+ N+L LDI Sbjct: 774 ADQLFATLMGDNVEPRRAFIESNALKVANLDI 805 >gi|121893|sp|P13364|GYRB_PSEPU RecName: Full=DNA gyrase subunit B gi|45694|emb|CAA38447.1| unnamed protein product [Pseudomonas putida] Length = 806 Score = 925 bits (2391), Expect = 0.0, Method: Composition-based stats. Identities = 405/811 (49%), Positives = 548/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++E+Y+ +L + +S +S L + +++ + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLESLVNEFRSVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E V E D + + +KL RLN +A + Sbjct: 595 TLKRLSRLYPEELTEHFVYLPEVTLEQLGDHAVMQAWLAKLQERLNSSQKSGLAYNASLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + ++ + Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGAKLSSLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRREFI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRREFIESNALSVSNLD 805 >gi|325275335|ref|ZP_08141286.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51] gi|324099526|gb|EGB97421.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51] Length = 806 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 399/811 (49%), Positives = 546/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNNQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E+ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD+E++E+Y+ +L + +S ++ L N +++ + K Sbjct: 535 PLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVAGVQLENLVNEFRGVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E + E D + K RL+ +A ++ Sbjct: 595 TLKRLSRLYPEDITEHFIYLPEVTVEQLGDHAAMQAWLVKFQARLSNSQKSGLAYQASLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + + + Sbjct: 655 EDKERNVWLPEVEVTSHGLASYVTFNRDFFGSNDYRTVVKLGANLSTLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAVSEFKEALDWLMNESTKRHTIQRYKGLGEMNPEQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|284007066|emb|CBA72341.1| DNA gyrase subunit B [Arsenophonus nasoniae] Length = 805 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 410/808 (50%), Positives = 542/808 (67%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I Sbjct: 1 MMSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V DNGRGIPTD+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 IVTIHTDNSISVLDNGRGIPTDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L L I+REG I+E ++ G+ PL + G + GT + F PS + F Sbjct: 121 VSVVNALSEKLSLVIRREGKIHEQTYQLGVPQAPLTIAGETE-ERGTYIRFWPSLETFKT 179 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F YD L RLRELSFLNS + I L DKR + Y+GGI+AFV YL R+K P+ Sbjct: 180 VTEFEYDILAKRLRELSFLNSGISIRLFDKRDNKE--DHFHYEGGIKAFVEYLSRNKTPI 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 S ++ I+++++M+WNDG+ ENV CFTNNIPQ+DGGTHL G R+A+TR + SY Sbjct: 238 HPSVFYFSAEKEGINVEISMQWNDGFQENVYCFTNNIPQRDGGTHLVGFRTAMTRTLNSY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++VVE+ +N+ Sbjct: 298 MDKEGYQKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTVVETLMNEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC ERDP Sbjct: 358 LVEYLLENPNDAKIVVSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPS 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY Sbjct: 478 GIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK QY+KD+E++ +YLI+ +L + L I + K+IK Sbjct: 538 VKKGKQEQYIKDDEAMNEYLISIALDNAALYTSPHAPALKGEPLEKLIIEYNAAQKIIKR 597 Query: 604 FYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHGS 656 + + + + D+ + L RL E + + Sbjct: 598 LERVYPLALLNNLIYQPTLVEDDLKDKAKVEDWINMLVKRLTDNEEHGSTYSYHINENSE 657 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +++ GV + L+ I I + + + I Sbjct: 658 RQLFEPVLRIRTHGVDTDYNLDFDFIHGIEYTRITKIGQLIGDLIEDGAYVERGERRQTI 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + L+ + R+G+ +QRYKGLGEMN QLWETT+NPDTR ++RV + DA D L Sbjct: 718 SSFEDALNWLSKESRRGLMVQRYKGLGEMNPEQLWETTMNPDTRHMMRVTVKDAIATDQL 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD VEPRR FI+EN+L + +DI Sbjct: 778 FTTLMGDAVEPRRAFIEENALKAENIDI 805 >gi|88798536|ref|ZP_01114120.1| DNA gyrase subunit B [Reinekea sp. MED297] gi|88778636|gb|EAR09827.1| DNA gyrase subunit B [Reinekea sp. MED297] Length = 804 Score = 924 bits (2389), Expect = 0.0, Method: Composition-based stats. Identities = 404/811 (49%), Positives = 548/811 (67%), Gaps = 17/811 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITVT++ + S +V DNGRGIPT++H+EEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 56 CSEITVTIHPNESVSVEDNGRGIPTEIHEEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ LKL I+R G ++E + +G+ PL V G A + TGT++TFLPSS Sbjct: 116 HGVGVSVVNALSAELKLTIRRGGKVHEQDYSHGVPVEPLKVVGDA-DTTGTKITFLPSSG 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ ++YD L RLRELSFLNS V I L D+R+ + Y+GG++AFV+YL+R+K Sbjct: 175 TFANIKYSYDILAKRLRELSFLNSGVAIRLKDERTAQE--DYFHYEGGLKAFVTYLNRNK 232 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + + D I +++A++WND Y EN+ +TNNIPQ+DGGTHL+G R+ALTR Sbjct: 233 QTLNEVFHFSFEREEDGIGVEVALQWNDSYQENIFSYTNNIPQRDGGTHLAGFRAALTRT 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+++ KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+ VE Sbjct: 293 LNSYIQQENLLKKQKVATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPAVEQE 352 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S +L EHP EAK++V K++DA+ R+AAR+ARD+TRRKG LDIA LPGKLADC E Sbjct: 353 MSRVFSEYLIEHPNEAKVVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQE 412 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAK GR R QAILPL+GKILNVE+ARFDKML S E+GTLIT Sbjct: 413 KDPALSELYLVEGDSAGGSAKMGRDRRTQAILPLKGKILNVEKARFDKMLQSAEVGTLIT 472 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ F++ KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI NG +YI +P Sbjct: 473 ALGCGIGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGHVYIAQP 532 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PL+ I +GK Y+KDE +LE YL++Q+L ++ I+++ L N + ++ Sbjct: 533 PLFKIKKGKQETYIKDEPALESYLLSQALDGTSLYVNETAPAITEHQLENLVSQFNEVHA 592 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKS 652 I + K +++ + + DQ L+ + + + Sbjct: 593 RIDKMSRVYPKDVLQRLIYKPRLTVDMLKDQAAVAEWVDSLSEDFLDVTSGSTVYQIVIT 652 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + ++ A G+ ++VL + S + + + N Sbjct: 653 EDTERHLWLPKIQATAHGLMTEYVLPHAFFGSNDYDAIVSLGEVLMDLIEEGAYIQRNDK 712 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K +I+ ++ + +G +QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 713 KHEISSFEEVIQWLMKEASRGYQIQRYKGLGEMNPDQLWETTMDPEARRMLQVTIEDAIA 772 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD+VEPRR+FI+ N+L LD Sbjct: 773 ADQIFTTLMGDDVEPRRQFIESNALLVSNLD 803 >gi|89092267|ref|ZP_01165221.1| DNA gyrase subunit B [Oceanospirillum sp. MED92] gi|89083355|gb|EAR62573.1| DNA gyrase subunit B [Oceanospirillum sp. MED92] Length = 808 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 403/812 (49%), Positives = 536/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSGE-DNQDYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSEIKVIIHPDESITVMDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LK+ I+R G ++E + +G + PL V G +GT V F PS + Sbjct: 120 HGVGVSVVNALSVKLKMTIRRNGQVHEQVYRHGEPEAPLSVVGETE-TSGTMVRFWPSEE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F +D L RLRELSFLNS V+I L D+R+ E Y+GG+ AFV YL+ +K Sbjct: 179 TFSNVSFKFDILAKRLRELSFLNSGVRIVLKDERTA--VEEVFEYEGGLGAFVEYLNTNK 236 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + + +++++AM+WND + E++ FTNNIPQ+DGGTHLSG R+ALTR Sbjct: 237 TTVNKLFHFTAEHEASGVAVEVAMQWNDSFQESIHSFTNNIPQRDGGTHLSGFRAALTRS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +K K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 297 LNNYIESESLNKGGKISTTGDDSREGLTAIISVKVPDPKFSSQTKDKLVSSEVKSAVEQT 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ +L+E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 357 MGERLAEYLQENPQEAKAVVSKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE++LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT Sbjct: 417 KDPALSEIYLVEGDSAGGSAKQGRARKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 477 ALGCGIGREEYNPDKLRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 536 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK QY+KD+E+L+ YL+ +L I L+ + + + Sbjct: 537 PLYKIKKGKQEQYLKDDEALDSYLLQGALDGTTLHVNADAPGIGGEKLQELVYQYRAVIR 596 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSE-----KS 652 I + ++ + + F E+ Q + + L ++K+ Sbjct: 597 TINRMSRVYPYAMLKSLLDTAAFPSENMADQAAVADWCDQFDDALAGFSDKAVSYQCLVE 656 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +N V GV +VL S + + L Sbjct: 657 EDKEHSNFVAKVVMQQHGVAHDYVLNEEFFASREYTEMAKMAETLSGLLEDGAYLQRGER 716 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++T L+ + + R+G +QRYKGLGEMN QLWETT++PD+R +L+V I DA Sbjct: 717 TKEVTDFEEGLNWLLDLSRRGHYIQRYKGLGEMNPEQLWETTMDPDSRRMLQVTIEDAIA 776 Query: 773 ADDLFSRLMGDEVEPRREFIQENSL-PSALDI 803 AD LF+ LMGDEVEPRR FI+ N+L + LD+ Sbjct: 777 ADQLFTTLMGDEVEPRRNFIESNALQVANLDV 808 >gi|239830977|ref|ZP_04679306.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301] gi|239823244|gb|EEQ94812.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301] Length = 826 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 486/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 14 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 73 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 74 ALAGHATLVTVTLNPDGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 133 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +TGTEV+F Sbjct: 134 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGGETGTEVSF 193 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS + FS+ +F++DTL+ RLREL+FLNS V+I L D+R + E + Y GG+ FV Y Sbjct: 194 LPSPETFSMVEFDFDTLERRLRELAFLNSGVRIKLADRRHADLVEHELHYDGGLVEFVKY 253 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KKPL++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 254 IDQSKKPLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 313 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+T Y + S +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 314 LTRQVTGYADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 373 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES VN+ LS WLEEHP K +V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 374 VESLVNEALSTWLEEHPAGGKAVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 432 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 433 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 492 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 493 TLITALGTSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 552 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY ++RGKS QY+K+E + ED+LI L E S V + DLR+ ++ Sbjct: 553 HIYIAQPPLYKVSRGKSSQYIKNEAAFEDFLIETGLEEATLEMA-SGEVRAGPDLRSVVE 611 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D+ +EQA I+G+ N + D + A +A RL+ I+E++E Sbjct: 612 DARTMRQLLGGLHTRYDRRVVEQAAIAGLLNPDASKDNATAQASADIVAKRLDMISEETE 671 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W + + +R+ RGV++ VL+ + + S ++ + R+ E + L Sbjct: 672 RGWTAYVTEDGGYRFERMVRGVKDIAVLDMALLGSADARQIDRVAARLSEVFAEPPVLRR 731 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD IF+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+TD Sbjct: 732 KDKVETLSGPMALLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTD 791 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQEN+L LD+ Sbjct: 792 ATDADSLFSRLMGDEVEPRREFIQENALSVANLDV 826 >gi|49473721|ref|YP_031763.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse] gi|49239224|emb|CAF25544.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse] Length = 810 Score = 924 bits (2388), Expect = 0.0, Method: Composition-based stats. Identities = 487/811 (60%), Positives = 613/811 (75%), Gaps = 9/811 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ I + + YDA SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+ Sbjct: 1 MSNEITSPINGNDYDAASIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A ++ VTL+ DGSC+V DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYKV Sbjct: 61 LAGHATLVNVTLHTDGSCSVRDNGRGIPTDIHPTEGISAAEVIMTQLHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS WL+LRIKR G I+EMSF +G+ D+PL G + GTE+ FL Sbjct: 121 SGGLHGVGVSVVNALSVWLQLRIKRNGKIHEMSFTHGVADSPLKTVGDCDAENGTEIRFL 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PSS+ F++ +F+++TL+ RLREL+FLNS V I L+D+R + R + + Y+GG+ FV Y+ Sbjct: 181 PSSETFTMVEFDFETLERRLRELAFLNSGVHILLVDQRHADVRSVELHYEGGLTEFVKYI 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D+ KK L+ PI I +D +S+D+A+ WND YHE VLCFTNNIPQ+DGGTHL G RSAL Sbjct: 241 DQSKKALLDCPIYIASVKDGVSVDVALWWNDSYHEKVLCFTNNIPQRDGGTHLVGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQI Y E S +KK+K ++ GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRQINGYAESSGIAKKEKINLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ VN+GLSAWLEEHP EAKI+ KV++A+ R+AAR+AR+LTRRKG LDI SLPGKLAD Sbjct: 361 ENLVNEGLSAWLEEHPSEAKIVTSKVVEAATAREAARKARELTRRKGALDITSLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+MLSS IGT Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSDMIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGT IG+D F +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G LYI Sbjct: 481 LITALGTSIGKDEFSPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + RGKS QY+K+E + E++LI+ L E + + DLR +DA Sbjct: 541 AQPPLYKVARGKSFQYIKNEAAFEEFLIDTGLEETTLELST-GEIRAGADLRQLAEDARM 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWH 654 + +L+ + +++ IEQA I G FN ++ E A +A+RL+ IA+ E+ W Sbjct: 600 LRQLLNGLHTRYNRNIIEQAAIVGAFNPQAFATPERAQKTADNIASRLDLIADDMERGWS 659 Query: 655 GS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 G ++ + +RI RGV++ L+ I S ++ S + E Y + L Sbjct: 660 GQCTSDGSLWFERILRGVKDVITLDARLINSADARQIDRVSQNLMEIYSSPPLLHRKDKS 719 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +I GP +LL++IF+ G++GI++QRYKGLGEMNA QLWETTLNPD R+LL+VKI DA+ A Sbjct: 720 EQIFGPMNLLESIFTNGKRGITLQRYKGLGEMNAEQLWETTLNPDARALLQVKINDATDA 779 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LFSRLMGDEVEPRR FI++N+L LDI Sbjct: 780 DLLFSRLMGDEVEPRRAFIKDNALSVANLDI 810 >gi|78484358|ref|YP_390283.1| DNA gyrase, B subunit [Thiomicrospira crunogena XCL-2] gi|78362644|gb|ABB40609.1| DNA gyrase subunit B [Thiomicrospira crunogena XCL-2] Length = 813 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 402/812 (49%), Positives = 553/812 (68%), Gaps = 13/812 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN IDE+L G+ Sbjct: 5 AENPIQPEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNGIDEALAGHC 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D + VT++ DGS +V+DNGRGIP LH+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLH Sbjct: 65 DKVVVTIHTDGSVSVTDNGRGIPVGLHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L L IKREG++++ ++ +G+ D PL ++TGTE+ FLPS + Sbjct: 125 GVGVSVVNALSEELHLTIKREGHVWKQTYRHGVPDEPLKAVSET-DETGTEIRFLPSRET 183 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ +F++D L RLRELSFLNS V I L+DKR + R ++GGI AFV Y++ +K Sbjct: 184 FTQTEFSFDYLLKRLRELSFLNSGVHIELLDKR--DDRHEVFEFEGGIRAFVDYINANKT 241 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ Q RD+I++++AM+W++ Y E++ CFTNNIPQ+DGGTHLSG R+ALTR + Sbjct: 242 PINQEAFYFSTVRDDITVEVAMQWSEAYQESIFCFTNNIPQRDGGTHLSGFRAALTRTLN 301 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y EK +KK K SV GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV++ VE+ +N Sbjct: 302 QYAEKEGLTKKYKMSVSGDDAREGLAAVISVKVPDPKFSSQTKDKLVSSEVKTAVETAMN 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ +L E+P +A+ + K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+D Sbjct: 362 EKLAEYLLENPKDAQSVFAKIVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P +SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKML+S E+GTLITAL Sbjct: 422 PARSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASAEVGTLITAL 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG + ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPL Sbjct: 482 GCGIGHEEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 541 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK Y+KD+ LE+YL+ +L + I L L+ +++I Sbjct: 542 YKVKKGKQEAYLKDDAELENYLLQSALDQAALWTSKETPAIQGVALETLAKSFLQTNRII 601 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN- 658 KTF+E + + E +D + + RL I E + + + Sbjct: 602 DRLARRFSKTFLELMLDLSPIHVETLNDYDACEKWIADALPRLRAIGEIQKVEYQLQVEP 661 Query: 659 ------NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 I +++ G + + + + + +++ + Sbjct: 662 ALQGETQFQIRLQQREHGTLTSQIYDEDFFAAAEYDHIAKVAKQLKGLLSETAYIQRGEK 721 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ +D + S ++G S+QRYKGLGEMN QLWETT+N + R LL+V I+DA Sbjct: 722 QENVSSFKEAMDWLLSEAKRGQSIQRYKGLGEMNPEQLWETTMNAEARRLLQVTISDAIT 781 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 782 ADQVFTTLMGDEVEPRRNFIESNALKAENIDV 813 >gi|146305046|ref|YP_001185511.1| DNA gyrase subunit B [Pseudomonas mendocina ymp] gi|145573247|gb|ABP82779.1| DNA gyrase subunit B [Pseudomonas mendocina ymp] Length = 806 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 403/812 (49%), Positives = 547/812 (67%), Gaps = 17/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +T++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CSEIVITIHPDESISVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R G ++E + +G+ PL G + TGTE+ F S++ Sbjct: 118 HGVGVSVVNALSEELRLTIRRAGKVWEQIYHHGVPQAPLATVGDT-DGTGTEIHFKASAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L RLRELSFLNS V I L D+RS + Y+GG++AFV YL+ +K Sbjct: 177 TFSNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE--ELFKYEGGLKAFVEYLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + Q IQ D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 NVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRH 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEQEGLAKKFKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++++Y+ +L + ++ +S L + + + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMDEYMTQSALEDASLHVNENAPGLSGGALEKLVGEYRGVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI 657 + + K E V E + + + + RL + EKS +++ S+ Sbjct: 595 TLDRLSRVYPKEITEHFVYLPRIGLEQLADHAGMQAWLEQFSARLKTM-EKSGQTYTASL 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ A G+ S K +++ + Sbjct: 654 REDRERHVWLPEVEVKAHGLSSYTTFNRDFFASNDYKTVTALGDQLNNLLEDSAYVQRGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K + LD + + K S+QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 714 RKKPVATFKEALDWLMAESTKRHSIQRYKGLGEMNPDQLWETTMDPEVRRMLKVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLD 805 >gi|154250463|ref|YP_001411287.1| DNA gyrase subunit B [Parvibaculum lavamentivorans DS-1] gi|154154413|gb|ABS61630.1| DNA gyrase, B subunit [Parvibaculum lavamentivorans DS-1] Length = 814 Score = 924 bits (2387), Expect = 0.0, Method: Composition-based stats. Identities = 471/815 (57%), Positives = 598/815 (73%), Gaps = 13/815 (1%) Query: 1 MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L Sbjct: 1 MTTPADDTPEEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNSIDEALA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D + V LN DGS TV DNGRGIP ++HK EG+SAAEVIMT+LHAGGKF+Q SYKVSG Sbjct: 61 GYCDAVNVRLNADGSVTVMDNGRGIPVEIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSG 120 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTE 172 GLHGVGVSVVNALS WL++RI R G + + F +G+ D PL TG A TGTE Sbjct: 121 GLHGVGVSVVNALSDWLEMRIWRAGKEHRIRFQHGVPDAPLEATGPAPIGADGKPVTGTE 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 +TF PSS+ F+ +F++ TL+HRLREL+FLNS V+I+L D R EP+E+ + Y+GG+EAF Sbjct: 181 ITFHPSSETFTQTEFDFATLEHRLRELAFLNSGVKINLTDHRGVEPKEVKLMYEGGLEAF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +LDR K PL+Q PI I+ R+ I++++AM WND YHENVLCFTNNIPQ+DGGTHL+G Sbjct: 241 VRFLDRTKAPLIQKPIAIRAEREGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR I SY +S +KK+K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RGALTRVINSYANESGIAKKEKVSLTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VVE VND LS WLEEHP EA+ +V KV++A+ R+AAR+AR+LTRRKG LD++SLPG Sbjct: 361 RPVVEGLVNDALSTWLEEHPAEARQVVTKVVEAAAAREAARKARELTRRKGALDVSSLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP KSELF+VEGDSAGGSAKQ R R NQA+LPLRGKILNVERARFDKMLSS Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARDRSNQAVLPLRGKILNVERARFDKMLSSN 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EIGTLITALG GIG+D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP +I G Sbjct: 481 EIGTLITALGAGIGRDDFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEVIERG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LYI +PPLY + RG S Y+K+E++L DYLI+ L + + D + DL + + Sbjct: 541 HLYIAQPPLYKVRRGTSETYLKNEKALGDYLISTGLEDMVLTLHD-GSQRAGPDLSDIVA 599 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 A + +++ + +EQA I+G N + ++ E A+ +A RL+ ++E++E Sbjct: 600 RARSVRAVLEGLPTKYPHFVVEQAAIAGALNPKALAEPEHAREAAAYIARRLDLLSEETE 659 Query: 651 KSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + R RGV+E+ ++G I S ++ ++ ++E Y+ +L Sbjct: 660 RGWTGETTQDGGLRFAREVRGVREEVSIDGPLIASADARRLDSYTEHLQEVYVKAATLRR 719 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 D I P LLD + + G KG ++QRYKGLGEMN QLWETTL+ D RSLL+VKI + Sbjct: 720 KDDSHIIRSPSQLLDAVMAAGTKGNTVQRYKGLGEMNPGQLWETTLDRDARSLLQVKIRE 779 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ADDLF +LMGD VEPRR+FI+EN+L LDI Sbjct: 780 LDDADDLFVKLMGDVVEPRRDFIRENALNVANLDI 814 >gi|296445647|ref|ZP_06887602.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b] gi|296256892|gb|EFH03964.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b] Length = 809 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 467/814 (57%), Positives = 608/814 (74%), Gaps = 16/814 (1%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS++ + Y ADSI++L+GLDAV+KRP MYIGDTD +GLHHM+YEV+DNAIDE+ Sbjct: 1 MSNDADDAVPTPEYGADSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A ++TVTL+ DGSCTV+DNGRG+PT +HKEEG+SAAEVIMT+LHAGGKF+Q SYKV Sbjct: 61 LAGHASLVTVTLDADGSCTVTDNGRGVPTGIHKEEGVSAAEVIMTQLHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----NDTGT 171 SGGLHGVGVSVVNALS WLKLRI ++G + M F NG PL V G A GT Sbjct: 121 SGGLHGVGVSVVNALSVWLKLRIWQDGREHFMEFANGDAVAPLAVVGDAPIEDGKPKRGT 180 Query: 172 EVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 +VTFLPS F +F+Y T++HRLREL+FLNS V+I L D R E + ++Y+GG+E Sbjct: 181 QVTFLPSLKTFKTVVEFDYATIEHRLRELAFLNSGVRIVLTDARHAEQKREELYYEGGLE 240 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 AFV YLDR K PL+ PI I G R++I++++A+ WND YHENVL FTNNIPQ+DGGTHL+ Sbjct: 241 AFVRYLDRAKTPLIAQPIMIHGQREHINVEVALWWNDSYHENVLVFTNNIPQRDGGTHLA 300 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G R+ LTRQIT Y E+S +K++K + GDDCREG T V+S+K+PDP+FSSQTK+KLVSS Sbjct: 301 GFRAGLTRQITGYAERSGLAKREKVDLTGDDCREGLTCVVSVKVPDPKFSSQTKDKLVSS 360 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE+ VN+ L WLEEHP EAK +V KV +A++ R+AAR+AR+LTRRKG LD+A+L Sbjct: 361 EVRPAVENIVNELLDQWLEEHPQEAKAVVSKVCEAAVAREAARKARELTRRKGALDVANL 420 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC ERDP K+ELF+VEGDSAGG+AKQGR+RE QA+LPLRGKILNVERARFDKMLS Sbjct: 421 PGKLADCQERDPAKAELFIVEGDSAGGTAKQGRNREFQAVLPLRGKILNVERARFDKMLS 480 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++IGTLITALGTGIG+D F+ +KLRYHKIIIMTDADVDGAHIRTL+LTFF+RQMP LI Sbjct: 481 SEQIGTLITALGTGIGRDEFNADKLRYHKIIIMTDADVDGAHIRTLILTFFYRQMPQLIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G ++I + PLY +T+ KS QY+KDE +LEDYLI+ L + C + + DLR Sbjct: 541 RGHVFIAQAPLYKVTKAKSTQYLKDERALEDYLIDSVLDGAVL-RCGTGEERAGKDLRQA 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 ++DA ++ + +D++ +EQ ++G D A+ +A RLN IAE++E Sbjct: 600 LEDARSFRTIMNGLHSRYDRSVVEQTALAGALQAPPDDAK----ANDVAERLNAIAEETE 655 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + W G + +R RGV + +L+ + + S ++ + + + E + SL Sbjct: 656 RGWTGETREGGYVFRRTLRGVAQAVILDAALLASSEARKLQERAESLREIFAGAASLARR 715 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 GD+ ++GP +L D ++GRKG+++QRYKGLGEMNA QLWETTL+ + RSLL+V++ +A Sbjct: 716 GDETPLSGPLALYDATAALGRKGLAIQRYKGLGEMNAEQLWETTLDREVRSLLQVRVKEA 775 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +A+D+F +LMGD VEPRREFIQEN+L LD+ Sbjct: 776 VEAEDIFVKLMGDVVEPRREFIQENALNVANLDV 809 >gi|16124415|ref|NP_418979.1| DNA gyrase subunit B [Caulobacter crescentus CB15] gi|239977278|sp|B8GXQ0|GYRB_CAUCN RecName: Full=DNA gyrase subunit B gi|239977279|sp|P0CAX1|GYRB_CAUCR RecName: Full=DNA gyrase subunit B gi|13421273|gb|AAK22147.1| DNA gyrase subunit B [Caulobacter crescentus CB15] gi|220962270|gb|ACL93626.1| DNA gyrase subunit B [Caulobacter crescentus NA1000] Length = 805 Score = 923 bits (2386), Expect = 0.0, Method: Composition-based stats. Identities = 451/813 (55%), Positives = 578/813 (71%), Gaps = 18/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+ Sbjct: 1 MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL Sbjct: 61 ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170 HGVGVSVVNALS WL+L I R G +++M F G L VTG + TG Sbjct: 121 HGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 180 Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 TEVTF PS D F+ +F+ TL+HRLREL+FLNS V I D R EP E +FY+GGIE Sbjct: 181 TEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIE 240 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 AFV +LD+ K PL+++PI ++G +D + IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS Sbjct: 241 AFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLS 300 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 R+ALTR ITSY E S KK+K S+ G+D REG T VLS+K+PDP+FSSQTK+KLVSS Sbjct: 301 AFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSS 360 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V++GLS W EEHP EAK IV K+ +A+ R+AAR+AR+LTRRK LDI SL Sbjct: 361 EVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSL 420 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLS Sbjct: 421 PGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLS 480 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S +IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 481 SDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY ++GKS +Y+KD+ ++ +L+++ + S ++ DL Sbjct: 541 RGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDLA-SGERMTGQDLLAL 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + I T IEQA +SG+ + A+ A RL+ AE+ + Sbjct: 600 VQTCRSAKANIDRLAARAPATAIEQAALSGLLGESPN-------AAAAATRLDLYAEEGD 652 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 W G ++ + R+ RGV E+ VL+ + + ++ + ++ E + Sbjct: 653 GPWSGERGDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFRRK 712 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + GP L++ + GRKG+++QRYKGLGEMN QLWETTL+ + R+LL+V++ A Sbjct: 713 DKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHA 772 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 ADD+FSRLMGD VEPRREFIQEN+L + +D+ Sbjct: 773 DDADDMFSRLMGDLVEPRREFIQENALDAEVDV 805 >gi|91774359|ref|YP_544115.1| DNA gyrase subunit B [Methylobacillus flagellatus KT] gi|91708346|gb|ABE48274.1| DNA gyrase subunit B [Methylobacillus flagellatus KT] Length = 798 Score = 922 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 406/801 (50%), Positives = 547/801 (68%), Gaps = 9/801 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y++DSI+IL+GLDAV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ D I VT Sbjct: 2 TDYNSDSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHK----EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ++ D S +VSDNGRGIPTD+ + E SAAE++MT LHAGGKF+Q SYKVSGGLHGV Sbjct: 62 IHPDNSISVSDNGRGIPTDIKEDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WLKLRI R G +++M F G+ +PL +TG GTEV FL S++ F+ Sbjct: 122 GVSVVNALSDWLKLRIFRNGQVHQMEFRRGVAVSPLTITG-TTERRGTEVHFLASTETFT 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+++ L R+RELSFLN+ V+I LID+R+ + + GG+ FV Y++R K L Sbjct: 181 NVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P G +D I ++++M+WND Y ENVLCFTNNIPQ+DGGTHL+GLR+A+TR + SY Sbjct: 239 HPKPFYASGEKDGIIVEVSMQWNDSYSENVLCFTNNIPQRDGGTHLTGLRTAMTRTLNSY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E++ +KK K GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV+ V+ Sbjct: 299 IEQNDLAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQEVVSAK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P EAKII K++DA+ RDAAR+AR++TRRKG +D LPGKLADC E+DP Sbjct: 359 LAEFLLENPNEAKIICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQEKDPA 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITALGT Sbjct: 419 LSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITALGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ G +YI +PPLY Sbjct: 479 GIGKADFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMGELVERGHVYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +G+ +Y+KDE+ L+ YL+ +L L IS L + + +I+ Sbjct: 539 VKQGRDERYLKDEQELDQYLLQSALKGAELLKQADGETISGEALAAIAKQMVLTEAIIRR 598 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 P +D++ + + G + + + A+KL L + + + + + Sbjct: 599 LSPLYDESILRALISLGKLELD-TETQAEATAAKLRALLGHTGSEVLVTQNQENGDYRLE 657 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + + G + V++ I S + S ++ ++ + + L Sbjct: 658 INKYIHGNLQASVIDSDFINSGDYQQILATSLTLQGLVGEGATIKRGEKQQPVNSFKEAL 717 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + S + G+++QRYKGLGEMN QLWETT++P R LLRV+I DA AD++F+ LMGD Sbjct: 718 DWLMSEAKHGLNIQRYKGLGEMNPEQLWETTMDPAVRRLLRVQIDDAIAADEIFTTLMGD 777 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR FI+ N+L LD+ Sbjct: 778 QVEPRRAFIEGNALGVSNLDV 798 >gi|304570783|ref|YP_002515534.2| DNA gyrase subunit B [Caulobacter crescentus NA1000] Length = 821 Score = 922 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 451/813 (55%), Positives = 578/813 (71%), Gaps = 18/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+ Sbjct: 17 MTTEEAAAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 76 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGL Sbjct: 77 ATKVQVILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGL 136 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TG 170 HGVGVSVVNALS WL+L I R G +++M F G L VTG + TG Sbjct: 137 HGVGVSVVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTG 196 Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 TEVTF PS D F+ +F+ TL+HRLREL+FLNS V I D R EP E +FY+GGIE Sbjct: 197 TEVTFFPSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIE 256 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 AFV +LD+ K PL+++PI ++G +D + IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS Sbjct: 257 AFVRHLDKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQMLCFTNNIPQRDGGTHLS 316 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 R+ALTR ITSY E S KK+K S+ G+D REG T VLS+K+PDP+FSSQTK+KLVSS Sbjct: 317 AFRAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSS 376 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V++GLS W EEHP EAK IV K+ +A+ R+AAR+AR+LTRRK LDI SL Sbjct: 377 EVRPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSL 436 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLS Sbjct: 437 PGKLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLS 496 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S +IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 497 SDQIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIE 556 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY ++GKS +Y+KD+ ++ +L+++ + S ++ DL Sbjct: 557 RGYIYIAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDLA-SGERMTGQDLLAL 615 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + I T IEQA +SG+ + A+ A RL+ AE+ + Sbjct: 616 VQTCRSAKANIDRLAARAPATAIEQAALSGLLGESPN-------AAAAATRLDLYAEEGD 668 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 W G ++ + R+ RGV E+ VL+ + + ++ + ++ E + Sbjct: 669 GPWSGERGDTGFVFSRVRRGVSERVVLDDVLLHAADARRLAERAVKLTEIFSGRAIFRRK 728 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + GP L++ + GRKG+++QRYKGLGEMN QLWETTL+ + R+LL+V++ A Sbjct: 729 DKSTTVRGPLDLVNAVLDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHA 788 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 ADD+FSRLMGD VEPRREFIQEN+L + +D+ Sbjct: 789 DDADDMFSRLMGDLVEPRREFIQENALDAEVDV 821 >gi|167031027|ref|YP_001666258.1| DNA gyrase subunit B [Pseudomonas putida GB-1] gi|166857515|gb|ABY95922.1| DNA gyrase, B subunit [Pseudomonas putida GB-1] Length = 806 Score = 922 bits (2384), Expect = 0.0, Method: Composition-based stats. Identities = 402/811 (49%), Positives = 547/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++E+Y+ +L + +S +S L +++ + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRSVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E + E D + + +K RLN + K+ Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLGDHAVMQAWLAKFQERLNSSQKSGLVYKASLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + +++ + Sbjct: 655 EDKERNVWLPEVEVTSHGLASYVTFNRDFFGSNDYRTVVNIGSKLSSLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|224827188|ref|ZP_03700283.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002] gi|224600581|gb|EEG06769.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002] Length = 796 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 403/806 (50%), Positives = 539/806 (66%), Gaps = 17/806 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y ADSI++LKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+AD I Sbjct: 1 MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHADTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+ SYK+SGGLHGVG Sbjct: 61 KVTINPDNSISVEDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDSNSYKISGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WL+L+I R+G ++EM F G PL VTG + GTEVTF S + F Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEAVAPLTVTGHSTY-RGTEVTFHASEETFGK 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F++D L R+RELSFLN V I+LIDKR+ + + GG+ FV Y++R+K L Sbjct: 180 IEFHFDILAKRIRELSFLNQGVAITLIDKRTGKE--ENFAFSGGVAGFVEYMNRNKTALH 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 G ++ +++++AM+WND Y E+V CFTNNIPQ+DGG+HL+ LR +TR + Y+ Sbjct: 238 PKVFHAIGEKEGMTVEVAMQWNDSYQESVQCFTNNIPQRDGGSHLTALRQVMTRTLNGYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E+S +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV ++D L Sbjct: 298 EQSDTAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISDAL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 ++L E+P +AKIIV K++DA+ R+AAR+AR++TRRKG++D LPGKLADC E+DP Sbjct: 358 KSFLLENPNDAKIIVGKIVDAARAREAARKAREITRRKGIMDGLGLPGKLADCQEKDPAM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKML+SQE+ TLITALG G Sbjct: 418 SELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLASQEVATLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ P L+ G +YI +PPLY Sbjct: 478 IGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQTPELVERGHIYIAQPPLYKA 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 GK +Y+KD+ L+ YL+ +L + + + + +S + L L +I+ Sbjct: 538 KHGKQERYLKDDYELDQYLLQLALEKAELMPAEGEAALSGDTLAEVARQFLLARAVIERE 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN------RLNFIAEKSEKSWHGSIN 658 D ++ + G + +++ ++A A RL+ + ++ W Sbjct: 598 SRVVDPLVLQAMLRVGRLSLDTEHAARDAVAVLTAALPAEFIRLDLLHDEKNDGWM---- 653 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 I + R G VL+ + S + ++ ++ + Sbjct: 654 ---IKITRKLHGNVMVTVLDQDFLDSGDYAELAKTGDLLKGLLREGATVKRGETVKPVAD 710 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + + RKG+++QRYKGLGEMN QLWETT++P R LL+VKI D ADD+F+ Sbjct: 711 FGEALDWLLAEVRKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVKIEDVMGADDVFT 770 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI+ N+L + +D+ Sbjct: 771 TLMGDNVEPRRAFIEGNALIARNIDV 796 >gi|104779320|ref|YP_605818.1| DNA gyrase subunit B [Pseudomonas entomophila L48] gi|95108307|emb|CAK13001.1| DNA gyrase, subunit B [Pseudomonas entomophila L48] Length = 806 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 402/811 (49%), Positives = 545/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ RD+ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++E+Y+ +L + +S +S L +++ + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFRTVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E + E + SK RLN ++ + Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLANHATMQGWLSKFQERLNNSQKSGLSYVASLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + ++ + Sbjct: 655 EDKERNIWLPEVEITSHGLASYVTFNREFFGSNDYRSVVNLGAKLGTLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAVTEFKEGLDWLMNESTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD LF+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQLFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|221135258|ref|ZP_03561561.1| DNA gyrase subunit B [Glaciecola sp. HTCC2999] Length = 808 Score = 921 bits (2380), Expect = 0.0, Method: Composition-based stats. Identities = 410/814 (50%), Positives = 555/814 (68%), Gaps = 17/814 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSE---ENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I + ++ DGS VSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSDIKIKIHTDGSVAVSDDGRGIPTEIHAEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+LRIKR G ++E +I+G+ PL V G TGTE+ F PS D Sbjct: 118 HGVGVSVVNALSHKLRLRIKRLGKVHEQEYIHGVPSAPLAVVGDTS-STGTEIRFWPSED 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L D+R + Y+GGI+AFV YL+++K Sbjct: 177 TFTNIEFHYDVLAKRLRELSFLNSGVSIILEDERDGKR--DHFKYEGGIQAFVEYLNQNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q P + R++ IS++++M+WND + EN+ CFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 TPVHQKPFQFNVEREDGISVEVSMQWNDSFQENIFCFTNNIPQRDGGTHLAGFRSALTRT 294 Query: 300 ITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +++EK +KK+K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 295 LNTFMEKEGFNKKNKNATNASGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVE 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S + + L+ +L E+P +AK+IV K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC Sbjct: 355 SAMGESLTEFLLENPADAKVIVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TL Sbjct: 415 QEKDPAFSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG+D ++ KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI Sbjct: 475 ITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIA 534 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I +GK QY+KD+++L YL + ++ + I+ L N + Sbjct: 535 QPPLYKIKKGKQEQYLKDDDALNAYLTSIAVDNSSLYTEEGAPGITGVALENLVLQYQAA 594 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESD-------QEINVSLASKLANRLNFIAEKSE 650 DK+I + + Q V S E Q + +A ++ + Sbjct: 595 DKMIARLHRIMPIDILNQLVYSDTLAVEDFTDEAKLTQFTDKFVAQMTSDESDGATYLGN 654 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 IN I + G+ + ++ + S + ++ I + Sbjct: 655 VIKDEEINRYYINITMRMHGIDYDYHIDSDFVASTEYQKIAALNHAINNMMGEGAYIQRG 714 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + + L+ + ++G +QRYKGLGEMN QLWETT++P++R +L+VKI DA Sbjct: 715 ERRQTVESFKEALEWLMHEAKRGQYIQRYKGLGEMNPDQLWETTMDPNSRRMLQVKIEDA 774 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD+VEPRR FI+ N+L LD+ Sbjct: 775 IGADQLFTTLMGDQVEPRRNFIEANALNVENLDV 808 >gi|115522035|ref|YP_778946.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53] gi|115515982|gb|ABJ03966.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53] Length = 813 Score = 920 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 468/805 (58%), Positives = 596/805 (74%), Gaps = 6/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 12 SEPAAPIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + V LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 72 TRVEVVLNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+LR+ R G + + F +G PLVV G + GTEVTFL S + Sbjct: 132 GVGVSVVNALSSKLQLRVWRNGKEHFIEFAHGDAVAPLVVVGDSNGKRGTEVTFLASPET 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ ++++ TL+HRLREL+FLNS V I L D R + M Y+GG+ FV YLDR+KK Sbjct: 192 FTHIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVEKREEMRYEGGVVEFVKYLDRNKK 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 ++ +PI I + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 252 AMVPAPIMIAAELNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y E +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N Sbjct: 312 GYAE--GIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+AW EEHP EAK IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERD Sbjct: 370 EALAAWFEEHPSEAKTIVGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERD 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITAL Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITAL 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D FD+ KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI GFLYI +PPL Sbjct: 490 GTGIGRDDFDLAKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPSLIEGGFLYIAQPPL 549 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS QY+KDE +LEDYLI L + S DL ++DA I + Sbjct: 550 YKVTRGKSEQYLKDERALEDYLIATGLD-DCAFKLASGEERGGRDLLALVEDARAIRGTL 608 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSI-N 658 + + ++++ +EQA I+GV N ++ + A +A RL+ +A++ E+ W G Sbjct: 609 HNLHSRYNRSVVEQAAIAGVLNPRITGDLATANAAADYIARRLDALADEVERGWVGRFAE 668 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +R RGV++ +++ + + S ++ ++ R++E Y +L + I G Sbjct: 669 GEGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAARLQEAYPRPGTLRRKDTETAIHG 728 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SL + + GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ + +ADD+F+ Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFT 788 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 +LMGD VEPRR+FIQENSL + +D+ Sbjct: 789 KLMGDVVEPRRDFIQENSLSANVDV 813 >gi|161594063|ref|NP_899673.2| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472] Length = 796 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 400/800 (50%), Positives = 535/800 (66%), Gaps = 5/800 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y ADSI++LKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+AD I Sbjct: 1 MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+ SYK+SGGLHGVG Sbjct: 61 KVTINPDNSVSVEDNGRGIPTDIHPEEGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WLKL+I R+G ++EM F G PL VTG + GTEVTF S + F Sbjct: 121 VSVVNALSDWLKLKIWRDGKVHEMEFRRGDAVAPLTVTGHTSH-RGTEVTFFASVETFGH 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++++D L R+RELSFLN V I LIDKRS + + GG+ FV Y++R+K L Sbjct: 180 IEYHFDILAKRIRELSFLNQGVGIQLIDKRSGKE--ENFAFSGGVAGFVEYMNRNKTVLH 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 G +D +S+++AM+WND Y E+V CFTNNIPQ+DGGTH++ LR +TR + ++ Sbjct: 238 PKVFYGIGEKDGMSVEVAMQWNDSYQESVQCFTNNIPQRDGGTHMTALRQVMTRTLNQFI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E+S +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV +++ L Sbjct: 298 EESEAAKKAKVDTTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEAL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P +AKII K+++A+ R+AAR+AR++TRRKGV+D LPGKLADC E+DP Sbjct: 358 KTYLLENPNDAKIICGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPSL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKML SQE+ TLITA+G G Sbjct: 418 CELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVATLITAMGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ G +YI +PPLY Sbjct: 478 IGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYKA 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 GK +Y+KD+ L YL+ +L + + + + +S L L +++ Sbjct: 538 KHGKQERYLKDDGELNQYLLQLALEKAELIPAEGEAPLSGETLGEIARQFLLARAVMERE 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 D +E + +G + ES Q+ + ++A L L+ + + + + + Sbjct: 598 SRVIDPLVLEAMLKTGPLSLESQQQADATVAE-LNKHLSADTIELQLLRDEKNDGHLVKI 656 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 R G VL+ + + S + + + + + LD Sbjct: 657 IRKLHGNVLVTVLDQNFLDSGDYAELKKTGSLLGGLLRQGAHVKRGETVKPVAEFGEALD 716 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +KG+++QRYKGLGEMN QLWETT++P R LL+V+I D ADD+F+ LMGDE Sbjct: 717 WLLAEVKKGMNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDVMGADDVFTTLMGDE 776 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR+FI+ N+L + +D+ Sbjct: 777 VEPRRQFIEGNALIARNIDV 796 >gi|153007484|ref|YP_001368699.1| DNA gyrase subunit B [Ochrobactrum anthropi ATCC 49188] gi|151559372|gb|ABS12870.1| DNA gyrase, B subunit [Ochrobactrum anthropi ATCC 49188] Length = 807 Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats. Identities = 481/808 (59%), Positives = 617/808 (76%), Gaps = 9/808 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 2 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 61 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ++TV LN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 62 LVTVALNPDGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 121 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG +TGTEV+FLPS D F Sbjct: 122 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGAETGTEVSFLPSPDTF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S+ +F++DTL+ RLREL+FLNS V+I L D+R + E + Y GG+ FV Y+D+ KK Sbjct: 182 SMVEFDFDTLERRLRELAFLNSGVRIKLTDRRHADVVEHELHYDGGLVEFVKYIDQSKKS 241 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L+ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQ+T Sbjct: 242 LLDEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQVTG 301 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES VN+ Sbjct: 302 YADASGMTKKEKVTLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLVNE 361 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLADC ERDP Sbjct: 362 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG Sbjct: 421 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 480 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 T IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G +YI +P Sbjct: 481 TSIGKDETHGFNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY ++RGKS QY+K+E + ED+LI L E S V + DLR+ ++DA + + Sbjct: 541 PLYKVSRGKSSQYIKNEAAFEDFLIETGLEEATLEMA-SGEVRAGTDLRSVVEDARTMRQ 599 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 L+ + +D+ +EQA I+G+ + + D A +A RL+ I+E++E+ W + Sbjct: 600 LLAGLHTRYDRRVVEQAAIAGLLHPDASRDNATAQRSADTVAKRLDMISEETERGWEAHV 659 Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +R+ RGV++ +L+ + + S ++ ++R+ E + L + Sbjct: 660 TEDGGYRFERMVRGVKDIAILDMALLGSADARQIDRVASRLSEVFAEPPVLRRKDKVETL 719 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +GP LLD IF+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+TDA+ AD L Sbjct: 720 SGPMGLLDAIFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVTDATDADSL 779 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FSRLMGD+VEPRREFIQEN+L LD+ Sbjct: 780 FSRLMGDDVEPRREFIQENALSVANLDV 807 >gi|109896336|ref|YP_659591.1| DNA gyrase, B subunit [Pseudoalteromonas atlantica T6c] gi|109698617|gb|ABG38537.1| DNA gyrase subunit B [Pseudoalteromonas atlantica T6c] Length = 806 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 407/812 (50%), Positives = 551/812 (67%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MAEENK---YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V D+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CTNINVKIHTDGSVSVKDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L++ I+R G ++E + +G+ PL V G + + TGT + F PS + Sbjct: 118 HGVGVSVVNALSRKLQIMIRRAGEVHEQEYQHGVPQKPLEVIGES-DTTGTSIRFWPSEE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+YD L RLRELSFLNS V I L D+R + Y+GGI AFV YL+++K Sbjct: 177 TFTGIEFHYDILAKRLRELSFLNSGVSIILEDERDGKK--DHFMYEGGIRAFVEYLNQNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ Q RD+ IS+++A++WND + ENV CFTNNIPQ+DGG+HL+G R ALTR Sbjct: 235 TPVHQQVFHFNSQRDDGISVEVALQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +++EK +KK+K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEVR VE+ Sbjct: 295 LNTFMEKEGHNKKNKTSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAVETV 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L+ +L E+P +KII+ K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC E Sbjct: 355 MGEKLNEFLLENPSASKIIIGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 415 KDPSLSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D +D KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP +I G++YI +P Sbjct: 475 ALGCGIGRDEYDPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +GK QY+KD++SL YL +L + +S L + K Sbjct: 535 PLYKTKKGKQEQYLKDDDSLTKYLTAIALDNASIHVNEEAPGLSGASLEKLVSQYQNGMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNC-ESDQEINVSLASK------LANRLNFIAEKSEKS 652 +IK + + + S + + E ++ + +K N ++ + E Sbjct: 595 MIKRVSRVMPEVILTSLIYSKIITLQDLQDEASLEVVAKSYTESLTRNEVDGATYRYEVR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + N I + G+ ++ ++ I S R + I + N Sbjct: 655 LNNERKNYYIALIIRLHGIDTEYKIDQEFIESIEYTRLRELNESINGLIEEGGYVKRNDK 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 I+ LD + + +KG +QRYKGLGEMN QLWETT++P +R +L+VK+ DA Sbjct: 715 VKAISSFAEGLDWLMAESKKGQYIQRYKGLGEMNPGQLWETTMDPASRRMLQVKVEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LF+ LMGD VEPRR FI+EN+L LD+ Sbjct: 775 ADQLFTTLMGDHVEPRRAFIEENALRVANLDV 806 >gi|226942174|ref|YP_002797247.1| DNA gyrase subunit B [Azotobacter vinelandii DJ] gi|226717101|gb|ACO76272.1| DNA gyrase protein, subunit B [Azotobacter vinelandii DJ] Length = 806 Score = 920 bits (2377), Expect = 0.0, Method: Composition-based stats. Identities = 408/813 (50%), Positives = 547/813 (67%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I++T++ D S TV DNGRGIP DLHKEEGISAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CNEISITIHTDESITVRDNGRGIPVDLHKEEGISAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+R+G ++E ++++G+ PL G + TGT+V F PS++ Sbjct: 118 HGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVGDT-DGTGTQVHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L RLRELSFLNS V I L D+RS + Y+GG++AFV YL+ +K Sbjct: 177 TFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLKAFVDYLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + Q +Q D + +++A++WNDG++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 NAVSQVFHFNVQREEDGVGVEVALQWNDGFNENILCFTNNIPQRDGGTHLAGFRSALTRN 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNAYIEQEGLAKKHKVTTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + +L E+P EA+ +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFGDFLLENPNEARAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKMLSS E+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 475 ALGCGIGREEYNIEKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++E+Y+ +L E +S +S L + D + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEEASLHVNESAPGLSGAALEKLVSDYRTVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + + + E V E DQ + + + L AEKS ++ S+ Sbjct: 595 TLARLSRLYPQDITEHFVYLPRVGLEQLGDQALMQAWLERFQAHLKA-AEKSGLTYRASL 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ +A G+ S + ++ + Sbjct: 654 REDRERHLWLPEVEMVAHGLSSYVTFNRDFFASNDYRTVTALGEQLNSLLEDGAYVRRGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + ++ L + + K S+QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 714 RRKPVSSFKETLAWLMAETAKRHSIQRYKGLGEMNPEQLWETTMDPSVRRMLKVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +F+ LMGD VEPRREFI+ N+L LD+ Sbjct: 774 ATDQIFNTLMGDAVEPRREFIENNALAVANLDV 806 >gi|15595202|ref|NP_064724.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAO1] gi|107098998|ref|ZP_01362916.1| hypothetical protein PaerPA_01000004 [Pseudomonas aeruginosa PACS2] gi|116053724|ref|YP_788159.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218888750|ref|YP_002437614.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58] gi|296386476|ref|ZP_06875975.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAb1] gi|313111474|ref|ZP_07797275.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016] gi|81857426|sp|Q9I7C2|GYRB_PSEAE RecName: Full=DNA gyrase subunit B gi|9945822|gb|AAG03394.1|AE004440_4 DNA gyrase subunit B [Pseudomonas aeruginosa PAO1] gi|115588945|gb|ABJ14960.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14] gi|218768973|emb|CAW24731.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58] gi|310883777|gb|EFQ42371.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016] Length = 806 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 402/813 (49%), Positives = 551/813 (67%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R ++E + +G+ PL G + +GTEV F PS + Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I L D+R+ + Y+GG++AFV YL+ +K Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + +Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD++++E+Y+ +L + + +S L +++ + Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +K + + E + + + ++ K RL AEKS ++ S+ Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ +A G+ S + + +++ + Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K I+ LD + + G K S+QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806 >gi|92112140|ref|YP_572068.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043] gi|91795230|gb|ABE57369.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043] Length = 805 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 410/808 (50%), Positives = 531/808 (65%), Gaps = 12/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ I Sbjct: 1 MSEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TVSDNGRGIPTD+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 RVVIHPDESITVSDNGRGIPTDIHSEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL + R G +YE + +G+ D+PL V G +GT+V F PS++ F+ Sbjct: 121 VSVVNALSEELKLTVWRAGQVYEQIYHHGVPDSPLDVVGKTE-KSGTQVNFKPSTETFAN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+YD L RLRELSFLNS V I LID+RS E Y+GG+ AFV +L+ +K L Sbjct: 180 IEFHYDILAKRLRELSFLNSGVAIRLIDERSG--AEELFHYEGGLRAFVDHLNTNKTALN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 Q D I++++AM+WND + EN+ C+TNNIPQ DGGTHL+G R+ALTR + Y+ Sbjct: 238 QIFHFETQRDDGIAVEVAMQWNDTFSENIFCYTNNIPQHDGGTHLAGFRAALTRTLNHYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 ESEGLLKKAKVNTSGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S +L E P EAK IV K+LDA+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP Sbjct: 358 SDYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G Sbjct: 418 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G ++I +PPLY I Sbjct: 478 IGREEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKI 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK Y+KDE++L DYL +L + I+ L N + + + I Sbjct: 538 KRGKQETYLKDEQALTDYLTTTALDGARLYVNANAPGIAGEQLENLVSQYRDVMRRIDRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKS-------EKSWHG 655 + + + V + ES ++ + L ++ I + Sbjct: 598 SRVYPNLVLRKIVHTAKLENESLKDRVTMQNWIDHLQAEMDSIIAYEGGPRYTFQLQEDT 657 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 V A GV +V S ++ + + Sbjct: 658 ERGLFLPSVALTAHGVTTDYVWGVDFFRSADYHAMTALGETLDGLLEESAYVARGERQRS 717 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + LD + S ++G+S+QRYKGLGEMN QLWETT++P +R +LRV I DA +D Sbjct: 718 VGTFYEALDWLMSEAQRGLSVQRYKGLGEMNPEQLWETTMDPQSRRMLRVSIEDAVASDM 777 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803 +F+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 MFNTLMGDEVEPRRDFIERNALVANLDI 805 >gi|146280401|ref|YP_001170554.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501] gi|145568606|gb|ABP77712.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501] Length = 804 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 399/810 (49%), Positives = 539/810 (66%), Gaps = 15/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---HTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSDISITIHTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+REG ++E + +G+ PL G + +GT++ F PS++ Sbjct: 117 HGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L RLRELSFLNS V I L D+R+ + Y+GG+ AFV+YL+ +K Sbjct: 176 TFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + Sbjct: 234 TAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 294 NNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +L EHP EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 354 GKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 474 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QY+KD+E++E+YL +L E + ++ L ++D + K Sbjct: 534 LYKVKRGKQEQYIKDDEAMEEYLTQSALEEASLHVNEDAPGLAGEALERLVNDYRTVMKT 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKSW 653 ++ + E + E D + + + RL + Sbjct: 594 LQRLSRLYPLELTEHFIYLPRVTLEQLADHSAMQAWLEQYSARLKAGERSGLIYNLSLRE 653 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + V+ + G+ S + ++ + K Sbjct: 654 DKERHLWLPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERK 713 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + LD + + G + S+QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 714 KPVASFKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAA 773 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRREFI+ N+L LD Sbjct: 774 DQIFNTLMGDAVEPRREFIETNALAVSNLD 803 >gi|152984068|ref|YP_001345400.1| DNA gyrase subunit B [Pseudomonas aeruginosa PA7] gi|150959226|gb|ABR81251.1| DNA gyrase, B subunit [Pseudomonas aeruginosa PA7] Length = 806 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 402/813 (49%), Positives = 553/813 (68%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R ++E + +G+ PL G + +GTEV F PS + Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I L D+R+ + Y+GG++AFV YL+ +K Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + Q +Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 SAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRN 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD++++E+Y+ +L + + ++ L +++ + Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLAGAALEKLVNEYRGVIA 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +K + + E + + + ++ + K RL+ AEKS ++ S+ Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESVMQGWLEKFQARLSA-AEKSGLTYKASL 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ +A G+ S + + +++ + Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K I+ LD + + G K S+QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806 >gi|209883685|ref|YP_002287542.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5] gi|209871881|gb|ACI91677.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5] Length = 812 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 478/803 (59%), Positives = 599/803 (74%), Gaps = 6/803 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA Sbjct: 13 TVAAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYATR 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + V LN DGS TV D+GRGIPTD+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGV Sbjct: 73 VEVILNPDGSVTVRDDGRGIPTDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 132 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALSS L LRI R G + + F +G PL V G AG GTEVTF S + F+ Sbjct: 133 GVSVVNALSSKLALRIWRGGKEHYIEFQHGDAVAPLAVVGDAGGKRGTEVTFHASPETFT 192 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++++DTL+HRLREL+FLNS V I L D R R + Y+GG+EAFV +LDR+KK + Sbjct: 193 HIEYDFDTLEHRLRELAFLNSGVNILLSDMRHAVERREELHYEGGVEAFVKFLDRNKKAV 252 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI ++ + I++++AM WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQIT Y Sbjct: 253 VDKPIVMRAEQHGITVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQITGY 312 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 E +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVES +N Sbjct: 313 AE--GMAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVESIINTA 370 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LSAWLEEHP EA+ IV KV++A+ R+AAR+ARDLTRRKG LDIASLPGKLADC ERDP Sbjct: 371 LSAWLEEHPTEARTIVGKVIEAAAAREAARKARDLTRRKGALDIASLPGKLADCQERDPA 430 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGT Sbjct: 431 KSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGT 490 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP LI G LYI +PPLY Sbjct: 491 GIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPQLIEAGHLYIAQPPLYK 550 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +TRGKS QY+KDE +LEDYLI L + + + DL+ ++DA I L+ + Sbjct: 551 VTRGKSEQYLKDERALEDYLIETGLDDCVLRLATGEE-RKGRDLQALVEDARTIRGLLAN 609 Query: 604 FYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINNS- 660 + ++++ +EQA I+GV N + E A +A RL+ +A++ E+ W G+ Sbjct: 610 IHSRYNRSVVEQAAIAGVLNARVTGNPETARDAADYIAKRLDALADEVERGWSGTFTEGQ 669 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 L +R RGV+E ++ + + S ++ F+ ++E + L + I GP Sbjct: 670 GFLFERTVRGVKEVATIDDALLSSAEARRLDDFAAALQETFPRSAILRRKDTETAIHGPV 729 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 SL + + GRKG++ QRYKGLGEMN QLWETTL+ + RSLL+VKI + ADD+F++L Sbjct: 730 SLFEAVTEAGRKGVAYQRYKGLGEMNPEQLWETTLDTNARSLLQVKIREVDAADDIFTKL 789 Query: 781 MGDEVEPRREFIQENSLPSALDI 803 MGD VEPRREFIQ+NSL + +D+ Sbjct: 790 MGDIVEPRREFIQDNSLDANVDV 812 >gi|306844398|ref|ZP_07476988.1| DNA gyrase, B subunit [Brucella sp. BO1] gi|306275211|gb|EFM56961.1| DNA gyrase, B subunit [Brucella sp. BO1] Length = 813 Score = 919 bits (2374), Expect = 0.0, Method: Composition-based stats. Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELAT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVEALSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|148560385|ref|YP_001258162.1| DNA gyrase subunit B [Brucella ovis ATCC 25840] gi|148371642|gb|ABQ61621.1| DNA gyrase, B subunit [Brucella ovis ATCC 25840] Length = 810 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 480/808 (59%), Positives = 619/808 (76%), Gaps = 9/808 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S+ +F+Y+TL+ RLREL+FLNS V+I L D R + +E + Y GG+ FV Y+D+ KK Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADCRHADVKEQELHYDGGLVEFVKYIDQSKKS 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S +KK+K + GDDCREG T++LS+K+PDP+FSSQTK+KLVSSEVR VVE VN+ Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAILSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLADC ERDP Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 T IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G +YI +P Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++DA + + Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARTLRQ 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E+ W G + Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662 Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +R+ RGV++ +L+ + + S ++ + R+ E ++ L + Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810 >gi|327478616|gb|AEA81926.1| DNA gyrase subunit B [Pseudomonas stutzeri DSM 4166] Length = 804 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 399/810 (49%), Positives = 539/810 (66%), Gaps = 15/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---HTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSDISITIHTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I+REG ++E + +G+ PL G + +GT++ F PS++ Sbjct: 117 HGVGVSVVNALSEELLLTIRREGKVWEQLYRHGVPQAPLAAVGET-DTSGTQIHFKPSAE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L RLRELSFLNS V I L D+R+ + Y+GG+ AFV+YL+ +K Sbjct: 176 TFQNIHFSWDILAKRLRELSFLNSGVGIVLRDERTAKE--ELFKYEGGLSAFVAYLNTNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR + Sbjct: 234 TAVNQVFHFNVQRDDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 294 NNYIEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +L EHP EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 354 GKYFADFLLEHPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GTLITA Sbjct: 414 DPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 474 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QY+KD+E++E+YL +L E + ++ L ++D + K Sbjct: 534 LYKVKRGKQEQYIKDDEAMEEYLTQSALEEASLHVNEDAPGLAGEALERLVNDYRTVMKT 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLN-----FIAEKSEKSW 653 ++ + E + E D + + + RL + Sbjct: 594 LQRLSRLYPLELTEHFIYLPRVTLEQLADHSAMQAWLEQYSARLKGGERSGLIYNLSLRE 653 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + V+ + G+ S + ++ + K Sbjct: 654 DKERHLWLPEVEISSHGLASYITFNRDFFGSNDYRTVTALGEKLNSLLEEGAYVQRGERK 713 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + LD + + G + S+QRYKGLGEMN QLWETT++P+ R +L+V I DA A Sbjct: 714 KPVASFKEALDWLMNEGTRRHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAA 773 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRREFI+ N+L LD Sbjct: 774 DQIFNTLMGDAVEPRREFIETNALAVSNLD 803 >gi|254718345|ref|ZP_05180156.1| DNA gyrase subunit B [Brucella sp. 83/13] gi|265983305|ref|ZP_06096040.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13] gi|306839568|ref|ZP_07472374.1| DNA gyrase, B subunit [Brucella sp. NF 2653] gi|306842586|ref|ZP_07475236.1| DNA gyrase, B subunit [Brucella sp. BO2] gi|264661897|gb|EEZ32158.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13] gi|306287282|gb|EFM58768.1| DNA gyrase, B subunit [Brucella sp. BO2] gi|306405354|gb|EFM61627.1| DNA gyrase, B subunit [Brucella sp. NF 2653] Length = 813 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 482/815 (59%), Positives = 625/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELAT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N ++ ++ + A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASKDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|254515866|ref|ZP_05127926.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3] gi|219675588|gb|EED31954.1| DNA gyrase, B subunit [gamma proteobacterium NOR5-3] Length = 804 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 546/810 (67%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD + SYD I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSD--ASESYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +T++ D S +V D+GRGIPTD+H EEG+SAAEVI+T LHAGGKF+ +YKVSGGL Sbjct: 59 CGKILITIHPDESVSVQDDGRGIPTDMH-EEGVSAAEVILTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I R G YE +++G+ L G A + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEELWLTIWRAGRRYEQRYVHGVPQGSLEDVGEA-DKTGTLIRFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F ++ L RLREL+FLNS V+I L D+RS + FY+GG++AFV YL+R+K Sbjct: 177 TFTNIEFEFEILAKRLRELAFLNSGVEILLEDERSGKE--DRYFYEGGLKAFVDYLNRNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ ++ + D ++++A++WND Y EN+ C+TNNIPQ+DGGTHL+G RSALTR + Sbjct: 235 TPMHKAFHFQADTEDGTAVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRSALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++VVE + Sbjct: 295 NAYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTVVEQTM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ S +L E P EAK IV K+LDA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 NNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D SE++LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKML+S E+GTL+TA Sbjct: 415 DAALSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLASVEVGTLVTA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQM LI G++YI +PP Sbjct: 475 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGYVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK QY+KD+ +L ++L Q+L IS L I +D + Sbjct: 535 LYKIAKGKQHQYLKDDAALAEFLTAQALDGAALYVNAEAPGISGESLAELIRQYQAVDAI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK----SEKSWH 654 +K ++ + I + V N + D+ ++ RL + K S Sbjct: 595 VKRRSRHYPEELIWELVFGPSLNGDDLTDKAAVEQYCDAMSERLLTLKTKGTSYSVVPRS 654 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 LV+ +A GV+ L+ S + + + Sbjct: 655 DDQETWYPLVRMLAHGVERPIALKPEFFRSKDYAAMAALGQTLNDLIDESGYFQRGEKTL 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + L+ + + +KG +QRYKGLGEMN QLWETT++P++R +L+V I DA AD Sbjct: 715 QTQDFVEGLEWLMAEAKKGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAMLAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++F+ LMGD+VEPRREFI++N+L LD+ Sbjct: 775 EIFTTLMGDQVEPRREFIEQNALYVSNLDV 804 >gi|62289106|ref|YP_220899.1| DNA gyrase subunit B [Brucella abortus bv. 1 str. 9-941] gi|82699044|ref|YP_413618.1| DNA gyrase subunit B [Brucella melitensis biovar Abortus 2308] gi|256368589|ref|YP_003106095.1| DNA gyrase subunit B [Brucella microti CCM 4915] gi|62195238|gb|AAX73538.1| GyrB, DNA gyrase, B subunit [Brucella abortus bv. 1 str. 9-941] gi|82615145|emb|CAJ10078.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [Brucella melitensis biovar Abortus 2308] gi|255998747|gb|ACU47146.1| DNA gyrase subunit B [Brucella microti CCM 4915] Length = 810 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 481/808 (59%), Positives = 620/808 (76%), Gaps = 9/808 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y+D+ KK Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKYIDQSKKS 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE VN+ Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLADC ERDP Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 T IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G +YI +P Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++DA + + Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARTLRQ 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E+ W G + Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662 Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +R+ RGV++ +L+ + + S ++ + R+ E ++ L + Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810 >gi|292490174|ref|YP_003525613.1| DNA gyrase subunit beta [Nitrosococcus halophilus Nc4] gi|291578769|gb|ADE13226.1| DNA gyrase, B subunit [Nitrosococcus halophilus Nc4] Length = 805 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 407/807 (50%), Positives = 549/807 (68%), Gaps = 11/807 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +++YD+ I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + + Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEV 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +V ++ + + T+SDNGRGIPTD+H EEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 SVIVHSNDTVTISDNGRGIPTDIHHEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L L I R+G +Y+ + +G+ PL GS + +GT + F PS IFS Sbjct: 122 VSVVNALSSTLFLEIHRDGQVYQQHYRDGVPQAPLTTVGSTKH-SGTTIRFSPSPKIFSN 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 FN+D RLREL+FLN+ V+I L D+R R+ Y+GGI+AFV +L+++K PL Sbjct: 181 IVFNFDIFAKRLRELAFLNAGVRILLEDERVG--RKEEFLYEGGIQAFVEHLNKNKTPLH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + QG RD++ ++LAM+WND Y E+ CFTNNIPQ+DGGTHL+G RSALTR + Y+ Sbjct: 239 DNVFYFQGERDDVVVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E+ +KK K S GDD REG T+VLSIK+ DP+FSSQTKEKLVSSEV+ VV++ V++ Sbjct: 299 EREALAKKTKVSTTGDDAREGLTAVLSIKVRDPKFSSQTKEKLVSSEVKPVVDALVSEYF 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 ++L EHP +AK I K++DA+ R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP Sbjct: 359 QSFLLEHPADAKAIGSKMIDAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G Sbjct: 419 SELFVVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKMLSSAEVATLITALGCG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 +G++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY + Sbjct: 479 VGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK +Y++D+ +E YLIN ++ I L + D ++ I+ Sbjct: 539 KRGKQERYIRDDAEMERYLINLAIDNAKIYSEPGATPIEGETLLTLVTDYFQLKGAIERL 598 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE-----KSEKSWHGSI 657 +D ++Q + + E E+ A++L +R N A + E + Sbjct: 599 SQRYDPLLLDQTLYLDTVSTELVTEVKRLEVWAAQLESRANSAARDGVRYEIEVTTPVEN 658 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + VK GV S ++ + + + T + N + ++ Sbjct: 659 QVPILQVKITRHGVTTYQRFSMDFFASPDYQHIQKLGKPLVKLITTESYVQRNDKQQPVS 718 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 ++ + R+G ++QRYKGLGEMN QLWETT+NP TR L +V+I DA AD++F Sbjct: 719 SIQGAVNWLMEEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIEDAIAADEIF 778 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 + LMGD VEPRR+FI+ N+L A LD+ Sbjct: 779 TTLMGDHVEPRRDFIEANALNVAHLDV 805 >gi|17988106|ref|NP_540740.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. 16M] gi|225851665|ref|YP_002731898.1| DNA gyrase subunit B [Brucella melitensis ATCC 23457] gi|256045916|ref|ZP_05448790.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. Rev.1] gi|256112631|ref|ZP_05453552.1| DNA gyrase subunit B [Brucella melitensis bv. 3 str. Ether] gi|256264825|ref|ZP_05467357.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9] gi|260563202|ref|ZP_05833688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265992329|ref|ZP_06104886.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994072|ref|ZP_06106629.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|17983859|gb|AAL53004.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M] gi|225640030|gb|ACN99943.1| DNA gyrase, B subunit [Brucella melitensis ATCC 23457] gi|260153218|gb|EEW88310.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|262765053|gb|EEZ10974.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263003395|gb|EEZ15688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263095280|gb|EEZ18907.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9] gi|326408144|gb|ADZ65209.1| DNA gyrase subunit B [Brucella melitensis M28] gi|326537855|gb|ADZ86070.1| DNA gyrase, B subunit [Brucella melitensis M5-90] Length = 813 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 483/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 TDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|189023380|ref|YP_001934148.1| DNA gyrase subunit B [Brucella abortus S19] gi|225626666|ref|ZP_03784705.1| DNA gyrase, B subunit [Brucella ceti str. Cudo] gi|237814597|ref|ZP_04593595.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A] gi|254694923|ref|ZP_05156751.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|254696550|ref|ZP_05158378.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|254700937|ref|ZP_05162765.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|254707179|ref|ZP_05169007.1| DNA gyrase subunit B [Brucella pinnipedialis M163/99/10] gi|254709277|ref|ZP_05171088.1| DNA gyrase subunit B [Brucella pinnipedialis B2/94] gi|254731465|ref|ZP_05190043.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|256030800|ref|ZP_05444414.1| DNA gyrase subunit B [Brucella pinnipedialis M292/94/1] gi|256060267|ref|ZP_05450442.1| DNA gyrase subunit B [Brucella neotomae 5K33] gi|256158821|ref|ZP_05456682.1| DNA gyrase subunit B [Brucella ceti M490/95/1] gi|256254206|ref|ZP_05459742.1| DNA gyrase subunit B [Brucella ceti B1/94] gi|256258686|ref|ZP_05464222.1| DNA gyrase subunit B [Brucella abortus bv. 9 str. C68] gi|260169704|ref|ZP_05756515.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|260546403|ref|ZP_05822143.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260759206|ref|ZP_05871554.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|260760928|ref|ZP_05873271.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260885003|ref|ZP_05896617.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261215258|ref|ZP_05929539.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|261221355|ref|ZP_05935636.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314658|ref|ZP_05953855.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316784|ref|ZP_05955981.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94] gi|261324241|ref|ZP_05963438.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261751453|ref|ZP_05995162.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|261759241|ref|ZP_06002950.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|265987855|ref|ZP_06100412.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1] gi|265997315|ref|ZP_06109872.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851528|ref|ZP_06792201.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026] gi|297247522|ref|ZP_06931240.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196] gi|189018952|gb|ACD71674.1| DNA gyrase subunit B [Brucella abortus S19] gi|225618323|gb|EEH15366.1| DNA gyrase, B subunit [Brucella ceti str. Cudo] gi|237789434|gb|EEP63644.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A] gi|260096510|gb|EEW80386.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669524|gb|EEX56464.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292] gi|260671360|gb|EEX58181.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59] gi|260874531|gb|EEX81600.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260916865|gb|EEX83726.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya] gi|260919939|gb|EEX86592.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261296007|gb|EEX99503.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94] gi|261300221|gb|EEY03718.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303684|gb|EEY07181.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261739225|gb|EEY27221.1| DNA gyrase subunit B [Brucella sp. F5/99] gi|261741206|gb|EEY29132.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513] gi|262551783|gb|EEZ07773.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264660052|gb|EEZ30313.1| hypothetical protein BALG_00432 [Brucella pinnipedialis M292/94/1] gi|294820117|gb|EFG37116.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026] gi|297174691|gb|EFH34038.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196] Length = 813 Score = 917 bits (2371), Expect = 0.0, Method: Composition-based stats. Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|326793326|ref|YP_004311146.1| DNA gyrase B subunit [Marinomonas mediterranea MMB-1] gi|326544090|gb|ADZ89310.1| DNA gyrase, B subunit [Marinomonas mediterranea MMB-1] Length = 807 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 405/810 (50%), Positives = 541/810 (66%), Gaps = 14/810 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I Sbjct: 1 MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT++ D S +VSDNGRGIP D+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 TVTIHPDESVSVSDNGRGIPVDMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L L I+++G IYE ++++G+ PL + G GT V F PS+D FS Sbjct: 121 VSVVNALSESLTLTIRKDGKIYEQNYVHGVPQAPLAIIGDTDGA-GTSVHFKPSADTFSN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F YD L RLRELSFLNS V I L D+RS + Y+GG+ +FV +L+ +K P+ Sbjct: 180 ILFIYDILAKRLRELSFLNSGVAIHLKDERSGKE--EFFNYEGGLRSFVEHLNTNKTPIN 237 Query: 245 QSPIRIQGS---RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 I D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R ALTR + Sbjct: 238 DIFHFICQRDDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGALTRTLN 297 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +++E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 NFIESEGLAKKQKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMA 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E P EAKIIV K++DA+ R+AARRARD+TRRKG LDIA LPGKLADC E+D Sbjct: 358 KRFAEYLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLADCQEKD 417 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITAL Sbjct: 418 PALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITAL 477 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D F+ +KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I G ++I +PPL Sbjct: 478 GCGIGRDEFNPDKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIFIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TR K+ Y+KDE +LE +LI +L + I + L I D + I + I Sbjct: 538 YKVTRRKNELYIKDEHALEQHLIEVALDGAALYVNEGAPGIQGSALAKLIRDYIAIQEDI 597 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAE-----KSEKSWH 654 + + + + + + E +D+ L ++ Sbjct: 598 ERMARVYPQDVMSKLLYVAPLRSESLTDETEVAEWVELLRQQMPMDTRTGFQFDFSVEKD 657 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N +V ++ GV ++ E + S S ++E + + Sbjct: 658 EERNVYLPVVDIMSHGVNNRYRFEATFFSSPEYARIVELSETVKELFSEESYIQRGERTQ 717 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +T + + ++G+ +QRYKGLGEMN QLWETT++PD+R +LRV I DA AD Sbjct: 718 IVTDIDVMKTWLMKEAKRGMDVQRYKGLGEMNPDQLWETTMDPDSRRMLRVTIDDAVAAD 777 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGDEVEPRR FIQ+N+L LD+ Sbjct: 778 QMFTTLMGDEVEPRRNFIQDNALSVANLDV 807 >gi|170719191|ref|YP_001746879.1| DNA gyrase subunit B [Pseudomonas putida W619] gi|169757194|gb|ACA70510.1| DNA gyrase, B subunit [Pseudomonas putida W619] Length = 806 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 402/811 (49%), Positives = 548/811 (67%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +V DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDITVIIHTDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ V G + TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGESE-TTGTHIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE--EFFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ R++ + +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RS+LTR Sbjct: 235 TPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRS 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY+E+ +KK+K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNSYIEQEGLAKKNKVSTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLIT Sbjct: 415 KDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P L+ G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY+KD+E++E+Y+ +L + +S +S L +++ + K Sbjct: 535 PLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEVLVNEFRGVMK 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNF-----IAEKSEKS 652 +K + + E + E D + + +KL RL+ + K+ Sbjct: 595 TLKRLSRLYPEELTEHFIYLPEVTLEQLGDHAVMENWLAKLQERLSNSQKSGLMYKATLR 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 N V+ + G+ S + +++ + Sbjct: 655 EDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNIGSKLASLLGEGAYVQRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + I LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 715 RKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIA 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 ADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805 >gi|254237753|ref|ZP_04931076.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719] gi|126169684|gb|EAZ55195.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719] Length = 806 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 402/813 (49%), Positives = 551/813 (67%), Gaps = 17/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R ++E + +G+ PL G + +GTEV F PS + Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGET-DGSGTEVHFKPSPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I L D+R+ + Y+GG++AFV YL+ +K Sbjct: 177 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 234 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + +Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 235 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 295 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 355 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAK GR+R QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 415 KDPALSELYIVEGDSAGGSAKHGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 475 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD++++E+Y+ +L + + +S L +++ + Sbjct: 535 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +K + + E + + + ++ K RL AEKS ++ S+ Sbjct: 595 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 653 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ +A G+ S + + +++ + Sbjct: 654 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 713 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K I+ LD + + G K S+QRYKGLGEMNA QLWETT++P+ R +L+V I DA Sbjct: 714 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNAEQLWETTMDPNVRRMLKVTIEDAI 773 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 806 >gi|298290587|ref|YP_003692526.1| DNA gyrase subunit beta [Starkeya novella DSM 506] gi|296927098|gb|ADH87907.1| DNA gyrase, B subunit [Starkeya novella DSM 506] Length = 812 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 478/805 (59%), Positives = 603/805 (74%), Gaps = 4/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + Y A SIQ+L+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA Sbjct: 9 TPSSNGEDYGAQSIQVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYA 68 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D +TVTLN DGS TV+DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKFNQ SYKVSGGLH Sbjct: 69 DEVTVTLNADGSVTVTDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFNQNSYKVSGGLH 128 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 GVGVSVVNALS+ L L I R G + + F +G + PL V G A GT VTF+PS D Sbjct: 129 GVGVSVVNALSTTLDLTIWRNGLEHHIRFRHGDAEAPLAVKGPAPEGRRGTMVTFVPSPD 188 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+Y TL+HRLREL+FLNS V+I L D R PE + M Y+GG+EAFV YLDR K Sbjct: 189 TFTHIEFDYATLEHRLRELAFLNSGVRIVLTDARHPEVKREEMMYEGGVEAFVQYLDRSK 248 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L+ PI I+ +D I+++ AM WND YHENVLCFTNNIPQ+D GTH +G +ALTRQ+ Sbjct: 249 QALLPKPIVIRAEKDGIAVECAMSWNDSYHENVLCFTNNIPQRDRGTHFTGFAAALTRQV 308 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y E+S +KK+K G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ V Sbjct: 309 IGYSERSGIAKKEKVEPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEALV 368 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +WLEEHP E+K +V KV++A+ R+AAR+AR+LTRRK LD+ASLPGKLADC ER Sbjct: 369 NEALGSWLEEHPAESKSLVTKVVEAAAAREAARKARELTRRKNPLDVASLPGKLADCQER 428 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP KSELF+VEGDSAGGSAK GR+R QAILPLRGKILNVERARFDKMLSS++IGTLITA Sbjct: 429 DPAKSELFIVEGDSAGGSAKMGRNRAFQAILPLRGKILNVERARFDKMLSSEQIGTLITA 488 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D F+++KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PP Sbjct: 489 LGTGIGRDDFNVDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPDLLDRGHVYIAQPP 548 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY +TRGKS QY+KDE SLEDYLI+Q L E S V DL + ++ + Sbjct: 549 LYKVTRGKSEQYLKDERSLEDYLIDQGLDEAALHLA-SGEVRVGADLHHVLESTRSFRNV 607 Query: 601 IKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + +P +++ +EQA I+G F ++E ++A+++A RL+ IAE +E+ W G + Sbjct: 608 MNGLHPRYNRAVVEQAAIAGAFAPGLLIEEERAAAVAAEVARRLDLIAEDTERGWTGEAD 667 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 S R RGV+E VL+ + + S ++ S ++E + +L G+ + G Sbjct: 668 GSGYRFSRTVRGVKEVAVLDATFVGSAEARRLDSLSAELQEVHAEPATLRRKGNDTLVFG 727 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P L D + GRKGI++QRYKGLGEMNA QLWETTL+ + RSLL+VK+ + + ADDLF+ Sbjct: 728 PMDLFDAVTDAGRKGIALQRYKGLGEMNAEQLWETTLDVNARSLLQVKVKEVADADDLFN 787 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 RLMGD VEPRREFIQ+N+L +++D+ Sbjct: 788 RLMGDVVEPRREFIQDNALRASVDV 812 >gi|312112799|ref|YP_004010395.1| DNA gyrase subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311217928|gb|ADP69296.1| DNA gyrase, B subunit [Rhodomicrobium vannielii ATCC 17100] Length = 811 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 451/801 (56%), Positives = 587/801 (73%), Gaps = 6/801 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYAD ++VT Sbjct: 12 EAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVT 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV DNGRGIPT++H +EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 72 LNADGSVTVEDNGRGIPTEIHSQEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 131 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ L+L I R G+ + M+F +G+ PL + G A + GT VTF PS F++ DF Sbjct: 132 VNALSTRLELTIWRSGHEHFMAFADGVPVEPLKIVGPAPDLRGTRVTFTPSPATFTMVDF 191 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +Y TL+ RLREL+FLNS V I L D R EP + Y+GG++AFV YLDR + PL P Sbjct: 192 DYATLEFRLRELAFLNSGVYIRLNDLRGVEPVKSEFKYEGGLKAFVEYLDRARTPLFPVP 251 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + ++ R+ ++++ A+ WNDGYHENVLCFTNNIPQ+DGGTHL+G R+ALTR I +Y + Sbjct: 252 VFVRADREGVAVEAALWWNDGYHENVLCFTNNIPQRDGGTHLAGFRAALTRTINTYAAAT 311 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +K++K + GDD REG T VLS+K+ DP+FSSQTK+KLVSSEVR VES + D L W Sbjct: 312 GVAKREKVQLTGDDAREGLTCVLSVKVADPKFSSQTKDKLVSSEVRPAVESIMTDILGTW 371 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP+E K+I+ KV +A+ R+AAR+AR+LTRRKGVLD+A+LPGKLADC ERDP KSE+ Sbjct: 372 FEEHPVEGKLILLKVAEAAAAREAARKARELTRRKGVLDVANLPGKLADCQERDPAKSEV 431 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQGR R NQA+LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG+ Sbjct: 432 FLVEGDSAGGSAKQGRDRSNQAVLPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGR 491 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI +G +YI +PPLY + RG Sbjct: 492 DDFDIAKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLIESGHIYIAQPPLYKVKRG 551 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 S Y+KD+ + ED+LI+ L + D+ S DLR ++ A ++ + Sbjct: 552 SSENYLKDQRAFEDFLIDGGLEGSV-FVNDNGERRSGRDLRQAVERARSFSHVLDGMHMR 610 Query: 608 HDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAEKSEKSWHGSIN-NSDIL 663 + + +EQA I+G+ N + + LA K+ R+ ++E++E+ W S + + Sbjct: 611 YSRAVVEQAAIAGLLNPKLLDDDEEEAGRLADKVVERMKALSEEAEQGWSWSRGVDRGFV 670 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 +R R V+E ++ + S ++ + + E + L G + + GP LL Sbjct: 671 FEREVRSVREAHAIDSALSHSADARKLHTYHPELAELFSGKTVLERKGTETPLHGPRDLL 730 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + +F+ GR G++MQRYKGLGEMN QL ETTL+P+ R+LL+VK+ + + AD++F++LMGD Sbjct: 731 NAVFAAGRAGVTMQRYKGLGEMNPEQLRETTLDPNVRTLLQVKLGELADADEIFAKLMGD 790 Query: 784 EVEPRREFIQENSLPS-ALDI 803 VEPRR+FIQ+N+L LDI Sbjct: 791 VVEPRRDFIQQNALSVSNLDI 811 >gi|23501039|ref|NP_697166.1| DNA gyrase subunit B [Brucella suis 1330] gi|23346904|gb|AAN29081.1| DNA gyrase, B subunit [Brucella suis 1330] Length = 810 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 481/808 (59%), Positives = 620/808 (76%), Gaps = 9/808 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 5 NSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 65 LVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+FLPS D F Sbjct: 125 VGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSFLPSPDTF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y+D+ KK Sbjct: 185 SMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKYIDQSKKS 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R ALTRQIT Sbjct: 245 LLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGALTRQITG 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE VN+ Sbjct: 305 YADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNE 364 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLADC ERDP Sbjct: 365 ALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLADCQERDP 423 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++GTLITALG Sbjct: 424 AKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVGTLITALG 483 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 T IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G +YI +P Sbjct: 484 TSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHIYIAQP 543 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++DA + + Sbjct: 544 PLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVEDARMLRQ 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E+ W G + Sbjct: 603 LLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETERGWSGHV 662 Query: 658 -NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + +R+ RGV++ +L+ + + S ++ + R+ E ++ L + Sbjct: 663 MEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRRKDKVESL 722 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ DA+ AD L Sbjct: 723 SGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVNDATDADSL 782 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 783 FSRLMGDEVEPRREFIQDNALNVANLDV 810 >gi|254690434|ref|ZP_05153688.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] gi|260755982|ref|ZP_05868330.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] gi|260676090|gb|EEX62911.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870] Length = 813 Score = 917 bits (2370), Expect = 0.0, Method: Composition-based stats. Identities = 483/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNAEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|254713300|ref|ZP_05175111.1| DNA gyrase subunit B [Brucella ceti M644/93/1] gi|254716346|ref|ZP_05178157.1| DNA gyrase subunit B [Brucella ceti M13/05/1] gi|261218128|ref|ZP_05932409.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1] gi|261321025|ref|ZP_05960222.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260923217|gb|EEX89785.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1] gi|261293715|gb|EEX97211.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 813 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 482/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ I I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEESIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARTLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|254283642|ref|ZP_04958610.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B] gi|219679845|gb|EED36194.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B] Length = 810 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 401/814 (49%), Positives = 545/814 (66%), Gaps = 15/814 (1%) Query: 1 MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ + + YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L Sbjct: 1 MSETTGDSMNEYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ I V ++ D S TV+D+GRGIPT+ H EEG+SAAEVIMT LHAGGKF+ +YKVSG Sbjct: 61 GHCSQIDVIIHPDESVTVADDGRGIPTETH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS L+L I+R+ +YE + +G+ D+PL V G +TGT V F PS Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQNKLYEQIYRHGVPDSPLAVVGETT-ETGTAVRFKPS 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + F+ +F++D L RLREL+FLNS V+I L D+RS + T Y GG+ AFV +L+ Sbjct: 179 PETFTNIEFHFDVLGKRLRELAFLNSGVKIVLKDERSGKS--ETYAYDGGLHAFVQFLNS 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ + + +++A++WND + EN+ C+TNNIPQ+DGGTHL+G RSALTR Sbjct: 237 NKTPINGVFHFMTEVDGGVGVEVALQWNDSFQENIFCYTNNIPQRDGGTHLAGFRSALTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 297 TLNNYIEREGLAKKAKVNTTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQ 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + +L E+P EAK++V K+LDA+ R+AAR+ARD+TRRKG LDIA LPGKLADC Sbjct: 357 TMGAAFADFLLENPAEAKLVVGKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKMLSSQE+GT++ Sbjct: 417 ERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLSSQEVGTMV 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG+ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G ++I + Sbjct: 477 TALGCGIGKSEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIERGHVFIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY I+RGKS QY+KDE +LE YL +L I+ L + + Sbjct: 537 PPLYKISRGKSSQYLKDEPALERYLTEGALDGAGLHVNADAPAITGGALAELVAQYQSVA 596 Query: 599 KLIKDFYPNHDKTFIEQAVISGV---FNCESDQEINVSLASKLANRLNFI-AEKSEKSWH 654 I + + Q + +D + A +L+ RL+ A +++ ++ Sbjct: 597 ATIDRLSRVYPPELLWQIPYMTAGLEVSDLTDTARVEAFAKELSERLHTDRASRNQYTYS 656 Query: 655 GSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 +++ ++++++ + L S ++ Sbjct: 657 VRVDSERGIEYPVIRQLSHSNVTEIPLTHGFFVSKEYASLVALGQTLDGLIEPGGYFKRG 716 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ T L + S RKG S+QRYKGLGEMN QLWETT++P+ R +LRVKI DA Sbjct: 717 EKVLETTDFTEGLTWLLSEARKGYSIQRYKGLGEMNPDQLWETTMDPEHRRMLRVKIEDA 776 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 777 ILADQMFTTLMGDDVEPRREFIEANALAVENLDV 810 >gi|188581760|ref|YP_001925205.1| DNA gyrase, B subunit [Methylobacterium populi BJ001] gi|179345258|gb|ACB80670.1| DNA gyrase, B subunit [Methylobacterium populi BJ001] Length = 815 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 465/816 (56%), Positives = 597/816 (73%), Gaps = 14/816 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D+ SY A+SI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L Sbjct: 1 MADSPNTEHAESYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+AD++TVTLN DGSCTVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHADLVTVTLNADGSCTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+ LKLRI R G + M F +G PL V G AG+ GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ F++ +F+Y TL+ RLREL+FLNS V+I L D R E + + Y+GG+EAFV YLD Sbjct: 181 STETFTMTEFDYATLEKRLRELAFLNSGVRIVLTDARHAEHKREELCYEGGVEAFVRYLD 240 Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R +KP+ M P+ + G RD I +++A WND ++E VL FTNNIPQ+DGGTH++G R+A Sbjct: 241 RSRKPVDGMAKPVTVLGERDGIRVEVAFWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+T Y E S +KK+K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR Sbjct: 301 LTRQLTGYAESSGIAKKEKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ +N+GLS WLEE+P +AK ++ KV+ A+ R+AAR+AR+ RKG LDIASLPGKLA Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP K EL LVEGDSAGGSAKQGR R QA+LPLRGKILNVER R D+MLSS EIG Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480 Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 TLITALG GIG+ S F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP +I Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G LYI +PPLY RG+ Y+KDE +LEDYLI+Q + + S L+ Sbjct: 541 RGHLYIAQPPLYKAERGRRALYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648 +++A ++ + +D+ +EQAV++G F + + + + LA + A RL+ IA++ Sbjct: 600 VEEARAFRGILHGLHTRYDRAVVEQAVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 EK W G+ + + R R V++ L+ + + S ++ + + E Y ++L Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVKQVASLDATLLASQEARRLAERAETLREIYEEPVTLS 719 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 GD+ + GP L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ Sbjct: 720 RKGDETEFYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D + ADDLF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815 >gi|163842400|ref|YP_001626804.1| DNA gyrase subunit B [Brucella suis ATCC 23445] gi|254705305|ref|ZP_05167133.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] gi|261756016|ref|ZP_05999725.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] gi|163673123|gb|ABY37234.1| DNA gyrase, B subunit [Brucella suis ATCC 23445] gi|261745769|gb|EEY33695.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686] Length = 813 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 483/815 (59%), Positives = 622/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARMLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWETTL+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|307543593|ref|YP_003896072.1| DNA gyrase subunit beta [Halomonas elongata DSM 2581] gi|307215617|emb|CBV40887.1| DNA gyrase, B subunit [Halomonas elongata DSM 2581] Length = 806 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 401/809 (49%), Positives = 517/809 (63%), Gaps = 13/809 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ I Sbjct: 1 MSEQAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCSEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV DNGRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 GVVIHPDESITVRDNGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I R+G ++E + +G PL V G TG+ V F PSS+ F Sbjct: 121 VSVVNALSEELKLTIWRQGQVHEQIYRHGEAVAPLAVVG-TTEQTGSRVHFRPSSETFQN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+YD L RLRELSFLNS V I L D+R+ + Y+GG+ AFV +L+ +K L Sbjct: 180 IEFHYDILAKRLRELSFLNSGVAIRLTDERTGKE--ELFHYEGGLRAFVDHLNTNKTVLN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 D + +++AM+WND + EN+ C+TNNIPQ DGGTHL+G R++LTR + Y+ Sbjct: 238 PVFHFNVEREDGVGVEVAMQWNDTFAENIFCYTNNIPQGDGGTHLAGFRASLTRTLNHYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 EAEGLLKKAKVNTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGRQF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S +L E P EAK IV K+LDA+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP Sbjct: 358 SEYLVERPNEAKAIVNKMLDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPSL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG G Sbjct: 418 SELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G ++I +PPLY I Sbjct: 478 IGREEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMSQLIERGHVFIAQPPLYKI 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK Y+KDE++L DYL +L I L + + I Sbjct: 538 KRGKQESYLKDEQALTDYLTTTALDGARLHVNADAPGIEGEGLEKLVHQYRDVMNRIDRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEI---NVSLASKLANRLNFIAEKS-------EKSWH 654 + + + V + E + L ++ I Sbjct: 598 SRVYPDVVLRKIVHAAKLEGEESLRDRVTMQNWIEYLQAEMDAIVSYEGGPRYTFRLEED 657 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 V A GV +V S + ++ + K Sbjct: 658 SERGFYLPAVTLAAHGVTSDYVWGVDFFTSADYRAIAGLGETLDNLVEEGAYVARGERKK 717 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + L+ + + ++G+S+QRYKGLGEMN QLWETT++P+TR +LRV I DA AD Sbjct: 718 SVGSFYDALEWLMNEAQRGLSIQRYKGLGEMNPDQLWETTMDPNTRRMLRVSIEDAVAAD 777 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 +F+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 778 MMFNTLMGDEVEPRRDFIERNALVANLDI 806 >gi|153209811|ref|ZP_01947513.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177'] gi|120575235|gb|EAX31859.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177'] Length = 808 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 402/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 60 CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GNIY ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 120 HGVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 179 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 237 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 297 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 357 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 477 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 537 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 597 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 656 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 657 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 716 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 717 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 776 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 777 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 808 >gi|161830408|ref|YP_001595905.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331] gi|161762275|gb|ABX77917.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331] Length = 808 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 60 CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GN+Y ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 120 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 179 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 237 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 297 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 357 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 417 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 477 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 537 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 597 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 656 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 657 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 716 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 717 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 776 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 777 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 808 >gi|226952833|ref|ZP_03823297.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ATCC 27244] gi|294648699|ref|ZP_06726159.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter haemolyticus ATCC 19194] gi|226836454|gb|EEH68837.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ATCC 27244] gi|292825374|gb|EFF84117.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter haemolyticus ATCC 19194] Length = 822 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 408/814 (50%), Positives = 543/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+L I R G ++ + +G PL V G + TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLQLTIHRAGQEHQQEYHHGDPQYPLRVIGET-DRTGTIVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R +GG+ FV Y++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERVNLENVYDY--EGGLSEFVRYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + IS+++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTTDADNGISVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYMENENLLKKEKVVVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G++YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY++D E+LE +LI+ ++ E IS L + I D K + Sbjct: 548 YKLKKGKQEQYLQDNEALETFLISNAIDELALHVSADAPAISGEALASVIADYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648 + + + ++ + F + + E + A +L + + + A + Sbjct: 608 QRLTQRYPASLLDGLLELDAFKIDHNHEREYVETWAEQLRSAIEALQPNLRPEISLEAFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLLEEGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGERRIQVASFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|240139126|ref|YP_002963601.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254561720|ref|YP_003068815.1| DNA gyrase subunit B [Methylobacterium extorquens DM4] gi|240009098|gb|ACS40324.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254268998|emb|CAX24959.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium extorquens DM4] Length = 815 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D+ SY A+SI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L Sbjct: 1 MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+ LKLRI R G + M F +G PL V G AG+ GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R E + + Y+GG+EAFV YLD Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240 Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R +KP+ M P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+T Y E S +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ +N+GLS WLEE+P +AK ++ KV+ A+ R+AAR+AR+ RKG LDIASLPGKLA Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP K EL LVEGDSAGGSAKQGR R QA+LPLRGKILNVER R D+MLSS EIG Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480 Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 TLITALG GIG+ S F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G LYI +PPLY RG+ + Y+KDE +LEDYLI+Q + + S L+ Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648 +++A ++ + +D++ +EQ+V++G F + + + + LA + A RL+ IA++ Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 EK W G+ + + R R V + L+ + + S ++ + + E Y ++L Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLASQEARRLAERAETLREIYEEPVTLA 719 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 GD+ ++ GP L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D + ADDLF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815 >gi|212217692|ref|YP_002304479.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154] gi|212011954|gb|ACJ19334.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154] Length = 810 Score = 916 bits (2367), Expect = 0.0, Method: Composition-based stats. Identities = 402/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 3 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 62 CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GNIY ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNIYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810 >gi|152994047|ref|YP_001338882.1| DNA gyrase subunit B [Marinomonas sp. MWYL1] gi|150834971|gb|ABR68947.1| DNA gyrase, B subunit [Marinomonas sp. MWYL1] Length = 807 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 403/814 (49%), Positives = 538/814 (66%), Gaps = 18/814 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSENK----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV ++ D S +VSDNGRGIP D+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 57 CDTITVLIHPDESISVSDNGRGIPVDIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I++ G +YE + +G+ PL + G + GT V F PS Sbjct: 117 HGVGVSVVNALSEALTLTIRKNGKVYEQFYAHGVPQAPLAIVGDSDGA-GTTVHFKPSPA 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F YD L RLRELSFLNS V I L D+R+ + Y GG+ +FV +L+ +K Sbjct: 176 TFSNILFVYDILAKRLRELSFLNSGVAIRLKDERTGKE--DFFNYTGGLRSFVEHLNTNK 233 Query: 241 KPLMQSPIRI---QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 P+ + + D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R ALT Sbjct: 234 TPINDIFHFMCQREDLEDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRGALT 293 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + +++EK +KK K + GDDCREG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 294 RTLNTFIEKEGLAKKQKVATTGDDCREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVE 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + S +L E P EAKIIV K++DA+ R+AARRARD+TRRKG LDIA LPGKLADC Sbjct: 354 QEMTKRFSEFLLEKPNEAKIIVNKMIDAARAREAARRARDMTRRKGALDIAGLPGKLADC 413 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKML+S E+GTL Sbjct: 414 QEKDPALSEIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLASVEVGTL 473 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG GIG+D F+ +KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I G ++I Sbjct: 474 ITALGCGIGRDEFNADKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEIIERGHIFIA 533 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPL+ I RGK QY+KDE +L+ +LI +L + I L + D + I Sbjct: 534 QPPLFKIKRGKQEQYIKDEAALDQHLIEVALDGAHMHVNEDAPGIQGEHLAKLMRDYIHI 593 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSE 650 + + + K + + + + + + + +++ A Sbjct: 594 EADVDRLARVYPKDVMGKLLYCKPLTQDDLTKEAAVMEWVEAIRSQMPQDARTGFRFDFS 653 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 N +V ++ GV ++ EG+ S K S + E + + Sbjct: 654 VEKDEERNIYLPVVDIMSHGVSNRYRFEGTFFNSPEYKRIVAMSETVAELFGEESYIQRG 713 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + + + + +G+++QRYKGLGEMN QLWETT++PD R +LRV I DA Sbjct: 714 ERRETVKTISDMKSWLMKEASRGMTIQRYKGLGEMNPEQLWETTMDPDARRMLRVTIDDA 773 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGDEVEPRR FIQ+N+L LD+ Sbjct: 774 VAADQMFTTLMGDEVEPRRNFIQDNALNVANLDV 807 >gi|163851998|ref|YP_001640041.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1] gi|163663603|gb|ABY30970.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1] Length = 815 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D+ SY A+SI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L Sbjct: 1 MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+ LKLRI R G + M F +G PL V G AG+ GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRGGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R E + + Y+GG+EAFV YLD Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240 Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R +KP+ M P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+T Y E S +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ +N+GLS WLEE+P +AK ++ KV+ A+ R+AAR+AR+ RKG LDIASLPGKLA Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP K EL LVEGDSAGGSAKQGR R QA+LPLRGKILNVER R D+MLSS EIG Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480 Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 TLITALG GIG+ S F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G LYI +PPLY RG+ + Y+KDE +LEDYLI+Q + + S L+ Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648 +++A ++ + +D++ +EQ+V++G F + + + + LA + A RL+ IA++ Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 EK W G+ + + R R V + L+ + + S ++ + + E Y ++L Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLSSQEARRLAERAETLREIYEEPVTLA 719 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 GD+ ++ GP L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D + ADDLF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815 >gi|209693646|ref|YP_002261574.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238] gi|208007597|emb|CAQ77697.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238] Length = 805 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 412/813 (50%), Positives = 551/813 (67%), Gaps = 18/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CSDIIVTIHEDDSVSVSDDGRGIPTEIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G I++ + +G+ PL V G + TGT++ F PS Sbjct: 116 HGVGVSVVNALSEKVELTINRRGEIFQQIYCHGVPQAPLAVIG-TTDTTGTKIRFWPSDQ 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F YD L RLRELSFLNS V I L D R E + ++GGI+AFV++L+R+K Sbjct: 175 TFANIEFVYDILAKRLRELSFLNSGVSIRLQDMR-EEDKSDHFMFEGGIKAFVTHLNRNK 233 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 P+ Q R I +++AM+WND Y EN+ C+TNNIPQ+DGG HLSG RSALTR Sbjct: 234 TPVHQKIFYFDSERKEDGIVVEVAMQWNDSYQENIFCYTNNIPQRDGGAHLSGFRSALTR 293 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + S+++K SKK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 TLNSFMDKEGFSKKAKSSASGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVES 353 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +N+ L+ +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC Sbjct: 354 AMNEKLAEFLAENPGEAKMVCSKIIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQ 413 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP +SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GTLI Sbjct: 414 EKDPAQSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGTLI 473 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI + Sbjct: 474 TALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQ 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK QY+KDEE++ +Y I Q+L I +L N I + Sbjct: 534 PPLYKVKKGKQEQYIKDEEAMAEYQITQALDNASLFVNPH-ESIFGQELENLIRKFNSVM 592 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK----- 651 KL+ + + + V + + ++ + L LN + + Sbjct: 593 KLLDRMSRRYPLPLLNRLVYTSRLTQDECENEATVQAWTEALVIALNEHETGASQYTAAL 652 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ +N + GVQ ++VL + S S + + Sbjct: 653 QFNEELNIHQPKLVVRTHGVQHEYVLSADLLNSKEYGRIAELSESLNGLIEEGAYVQRGE 712 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K+ + + R+G+ +QRYKGLGEMN QLWETT++PD+R +++V I DA Sbjct: 713 RKLATETLDEAIAWLIKDSRRGVYLQRYKGLGEMNPEQLWETTMDPDSRRMMQVTINDAV 772 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+LF+ LMGD VEPRR FI+EN+L LD+ Sbjct: 773 SADELFTTLMGDHVEPRRNFIEENALRVANLDV 805 >gi|215918859|ref|NP_819060.2| DNA gyrase subunit B [Coxiella burnetii RSA 493] gi|206583743|gb|AAO89574.2| DNA gyrase subunit B [Coxiella burnetii RSA 493] Length = 810 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 3 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 62 CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GN+Y ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810 >gi|119475239|ref|ZP_01615592.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143] gi|119451442|gb|EAW32675.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2143] Length = 804 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 401/810 (49%), Positives = 529/810 (65%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MTD--SENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 II V ++ D S +VSD+GRGIPT++H EEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 59 CSIIRVVIHPDESVSVSDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I+R G ++E + +G+ PL V G A +GTE+ F PSS Sbjct: 118 HGVGVSVVNALSEELKLTIRRGGKLFEQVYKHGVPQKPLAVVGDAE-TSGTELRFKPSSG 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F++D L RLREL+FLNS V I L D+RS + T FY+GG+ FVSYL+ +K Sbjct: 177 TFTNIQFHFDQLAKRLRELAFLNSGVNIELKDERSGKA--ETFFYEGGLSEFVSYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + ++ +++A++WND + E + C+TNNIPQ+DGGTHL+G R+ALTR + Sbjct: 235 TPINKLFHFNIMGEGDVGVEVALQWNDSFQEGIFCYTNNIPQRDGGTHLAGFRAALTRSL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +K+ K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+++VE + Sbjct: 295 NAYIEREGLAKRAKVSTSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTIVEQAM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N +L E+P EAK++V K++DA+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NQAFGDYLLENPGEAKLVVTKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GT++ A Sbjct: 415 DPALSEVYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSVEVGTIVKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+ F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G ++I +PP Sbjct: 475 LGCGIGRSEFNADKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHIFIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RGK QY+KDE+ E YL +L I L + + Sbjct: 535 LYKINRGKQQQYIKDEDGKEAYLTQSALETASLHMNADAPGIGGQGLEVLVKQYRSVMHT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRL----NFIAEKSEKSWH 654 I + + V + + A L +L Sbjct: 595 ISRLSRLYPSIAMTSMVYLPALTVDELHDRATVQQWADLLQEKLGVGTTAQTYNVSVKED 654 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 +N V ++ G + +FV S K + + Sbjct: 655 TERHNFLPQVISLSHGTETEFVFNQDFYSSNDYKAIVELGIALTGLLEDGAYIQRGEKTE 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +I +D + +G+S+QRYKGLGEMN QLWETT++PD R +LRV I DA AD Sbjct: 715 EINDFGDAIDWLMIQAERGLSIQRYKGLGEMNPDQLWETTMDPDVRRMLRVTIEDAITAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGD+VEPRREFI+EN+L LD+ Sbjct: 775 QIFTTLMGDQVEPRREFIEENALKVANLDV 804 >gi|330890246|gb|EGH22907.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori str. 301020] Length = 805 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 546/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI +G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIESGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFTTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|149912065|ref|ZP_01900656.1| Putative DNA gyrase, subunit B [Moritella sp. PE36] gi|149804861|gb|EDM64898.1| Putative DNA gyrase, subunit B [Moritella sp. PE36] Length = 805 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 404/808 (50%), Positives = 537/808 (66%), Gaps = 14/808 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ I Sbjct: 1 MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I R G I+ + +G+ + P+ TG TGT++ F PS D F+ Sbjct: 121 VSVVNALSEKLELTIFRHGKIHNQIYRHGVPEAPMAATG-VIEGTGTKLRFWPSHDTFTN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AF+ YL+ +K P+ Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYQGGIKAFIDYLNVNKTPIN 238 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + RD+ I++++AM+WNDG+ E + CFTNNIPQ+DGG HL+G R ALTR + +Y Sbjct: 239 KDAFHFSVERDDGITVEVAMQWNDGFQEAIYCFTNNIPQRDGGAHLAGFRGALTRTLNNY 298 Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 +EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQSMGE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +L E+P EA +V K++DAS R+AAR+ARD+TRRKG LD+A LPGKLADC E+DP Sbjct: 359 KLAEYLLENPKEAATVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQEKDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK +Y+KD+ L YL +L + I L + KI+KL+ Sbjct: 539 KMKKGKQERYLKDDADLTQYLTTIALDDAGLFVNPDAPAIQGAALEGLVTGYRKIEKLMA 598 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIA-----EKSEKSWHG 655 + + F + + E + + + A +L L + Sbjct: 599 KLNRSLPRVFTNEMIYQAPLTVEMLDDEALTMAWAEELVATLTAKEMSGTLYSARIVKDE 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ G+ + S I + + Sbjct: 659 ESQLFYPVLAIRQHGLDNNYDFTPGFFKSKEYATLTGLG--IANLLEEGAYIKRGEKTRE 716 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 +T L+ + + ++G +QRYKGLGEMN SQLWETT++PDTR +L+V+I DA AD Sbjct: 717 VTSFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPDTRRMLQVRIEDAVAADQ 776 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 LF+ LMGD VEPRREFI+EN+L LD Sbjct: 777 LFTTLMGDHVEPRREFIEENALKVANLD 804 >gi|66043275|ref|YP_233116.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae B728a] gi|289677553|ref|ZP_06498443.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae FF5] gi|63253982|gb|AAY35078.1| DNA gyrase, B subunit [Pseudomonas syringae pv. syringae B728a] gi|330937293|gb|EGH41304.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi str. 1704B] Length = 805 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 405/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|254447538|ref|ZP_05061004.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015] gi|198262881|gb|EDY87160.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015] Length = 802 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 407/809 (50%), Positives = 545/809 (67%), Gaps = 13/809 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSDN-----YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +VSDNGRGIPTD+H EEG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CSEIRVVIHNDESVSVSDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L L I R G + + + + D PL V G + +GT++TF S + Sbjct: 116 HGVGVSVVNALSNKLTLEILRNGKRHIQHYTDSVPDAPLEVAGDT-DRSGTKITFRASEE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ ++YD L RLRELSFLNS ++I L D+R E +E Y+GGI AFV +L ++K Sbjct: 175 IFTNVTYHYDILAKRLRELSFLNSGIRIVLRDER-AEGKEDVFEYEGGISAFVEHLSKNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + I S+++I +++A++W+D Y EN+ C+TNNIPQ+DGGTHL+G R ALTR + Sbjct: 234 TPLHEQVIHFDTSKEDIGVEVALQWSDSYQENIFCYTNNIPQRDGGTHLAGFRGALTRTL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+++ + K K SV GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+SVVES + Sbjct: 294 NNYIDREGVASKAKVSVSGDDAREGLVAVVSVKVPDPKFSSQTKDKLVSSEVKSVVESAM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS +L EHP EAK I K++DA+ R+AAR+AR++TRRK VLD+A LPGKLADC E+ Sbjct: 354 TEKLSEFLLEHPNEAKAIAHKIVDAARAREAARKAREMTRRKDVLDVAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SELF+VEGDSAGGSAKQGR R QA+LPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 414 DPTQSELFIVEGDSAGGSAKQGRDRRTQAVLPLKGKILNVEKARFDKMLSSAEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PP Sbjct: 474 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD++SL DYL+NQ+L + +S + + + Sbjct: 534 LYKVKKGKQERYLKDDKSLTDYLLNQALEKAEFHVNADAPALSAEAFAELAQRYMAANAI 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFI---AEKSEKSWHG 655 I+ +DK +E + + L+ +N + + Sbjct: 594 IERMSKRYDKLVLESMMDLPKVTESHISDKSFMDQWVESLSTNINRETGPSVDYTTAVEK 653 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + V+RI GV E F + +R++ + + Sbjct: 654 REEGLGVRVERIVHGVPHIERYEPEFFFGGEYQLIGDLGDRLDGLLGEGAFIKRGDKIQE 713 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + + L + + RKG +QRYKGLGEMN QL ETTL+P+TR LL+V+I DA AD+ Sbjct: 714 VQTFGAALMWLLADARKGQMIQRYKGLGEMNPDQLHETTLDPETRRLLQVRIEDAVAADE 773 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 774 VFTTLMGDHVEPRRDFIESNALSVANLDV 802 >gi|218530751|ref|YP_002421567.1| DNA gyrase subunit beta [Methylobacterium chloromethanicum CM4] gi|218523054|gb|ACK83639.1| DNA gyrase, B subunit [Methylobacterium chloromethanicum CM4] Length = 815 Score = 915 bits (2365), Expect = 0.0, Method: Composition-based stats. Identities = 462/816 (56%), Positives = 599/816 (73%), Gaps = 14/816 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D+ SY A+SI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L Sbjct: 1 MADSPNTEHADSYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+AD++TVTLN DGS TVSDNGRGIPTD+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGHADLVTVTLNADGSVTVSDNGRGIPTDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS+ LKLRI R G + M F +G PL V G AG+ GTEVTFLP Sbjct: 121 GGLHGVGVSVVNALSTSLKLRIWRAGKEHRMEFRHGDAVAPLEVVGPAGDRRGTEVTFLP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ F++ +F+Y TL+ RLREL+FLNS V+I + D R E + + Y+GG+EAFV YLD Sbjct: 181 STETFTMTEFDYPTLEKRLRELAFLNSGVRIVVTDARHAEHKREELCYEGGVEAFVRYLD 240 Query: 238 RHKKPL--MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R +KP+ M P+ + G RD I +++A+ WND ++E VL FTNNIPQ+DGGTH++G R+A Sbjct: 241 RSRKPVDGMTKPVTVLGERDGIRVEVALWWNDSFNETVLPFTNNIPQRDGGTHMAGFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQ+T Y E S +K++K S+ GDDCREG T+V+S+++PDP+FSSQTK+KLVSSEVR Sbjct: 301 LTRQLTGYAESSGIAKREKVSLTGDDCREGLTAVISVQVPDPKFSSQTKDKLVSSEVRPA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ +N+GLS WLEE+P +AK ++ KV+ A+ R+AAR+AR+ RKG LDIASLPGKLA Sbjct: 361 VENILNEGLSTWLEENPAQAKSVMGKVVLAAAAREAARKARETITRKGALDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP K EL LVEGDSAGGSAKQGR R QA+LPLRGKILNVER R D+MLSS EIG Sbjct: 421 DCQERDPSKCELLLVEGDSAGGSAKQGRDRTFQAVLPLRGKILNVERVRADRMLSSAEIG 480 Query: 476 TLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 TLITALG GIG+ S F+ +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 481 TLITALGAGIGRSSTDREGFNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIE 540 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G LYI +PPLY RG+ + Y+KDE +LEDYLI+Q + + S L+ Sbjct: 541 RGHLYIAQPPLYKAERGRRVLYLKDERALEDYLIDQGVEGAVL-RLASGTEFGGAQLKTL 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEK 648 +++A ++ + +D++ +EQ+V++G F + + + + LA + A RL+ IA++ Sbjct: 600 VEEARAFRGILHGLHTRYDRSVVEQSVLAGAFAKDVAENLGEAEVLADRTAKRLDRIADE 659 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 EK W G+ + + R R V + L+ + + S ++ + + E Y ++L Sbjct: 660 IEKGWTGAASEGGYVFSRTLRSVTQVANLDATLLASQEARRLAERAETLREIYEEPVTLA 719 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 GD+ ++ GP L + + + GRKG+ +QRYKGLGEM A QLWETTL+ D RSLL+VK+ Sbjct: 720 RKGDETELYGPVGLFEAVMAFGRKGLQLQRYKGLGEMTAQQLWETTLDRDVRSLLQVKVK 779 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D + ADDLF +LMGD VEPRREFIQEN+L LD+ Sbjct: 780 DTTDADDLFVKLMGDVVEPRREFIQENALSVANLDV 815 >gi|213155387|ref|YP_002317432.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057] gi|260558096|ref|ZP_05830307.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606] gi|301345942|ref|ZP_07226683.1| DNA gyrase, B subunit [Acinetobacter baumannii AB056] gi|301594683|ref|ZP_07239691.1| DNA gyrase, B subunit [Acinetobacter baumannii AB059] gi|332873310|ref|ZP_08441265.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059] gi|213054547|gb|ACJ39449.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057] gi|260408450|gb|EEX01757.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606] gi|332738516|gb|EGJ69388.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059] Length = 822 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|184156322|ref|YP_001844661.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU] gi|183207916|gb|ACC55314.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii ACICU] Length = 822 Score = 915 bits (2364), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALYISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|212211673|ref|YP_002302609.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212] gi|212010083|gb|ACJ17464.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212] Length = 810 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 401/812 (49%), Positives = 541/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 3 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 62 CSHIWVTIHADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GN+Y ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWRQRLEEQLNEPKTENSLRYQTAIK 658 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810 >gi|239503906|ref|ZP_04663216.1| DNA gyrase, B subunit [Acinetobacter baumannii AB900] Length = 822 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 408/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648 + + + ++ + F + + E L L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVEKLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|169794210|ref|YP_001712003.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii AYE] gi|215481765|ref|YP_002323947.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294] gi|301512866|ref|ZP_07238103.1| DNA gyrase, B subunit [Acinetobacter baumannii AB058] gi|332854716|ref|ZP_08435503.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150] gi|332865596|ref|ZP_08436436.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113] gi|169147137|emb|CAM84996.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii AYE] gi|213988939|gb|ACJ59238.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294] gi|332727873|gb|EGJ59275.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150] gi|332735248|gb|EGJ66325.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113] Length = 822 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 408/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648 + + + ++ + F + + E L L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWAYQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|254496738|ref|ZP_05109597.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella drancourtii LLAP12] gi|254354033|gb|EET12709.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella drancourtii LLAP12] Length = 805 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 409/811 (50%), Positives = 551/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++SYD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MS---VDASYDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H+EEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CKEIFVTIHSDESISVKDDGRGIPVDIHQEEGRSAAEVILTILHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G IYE + +G+ D P+ VTG A N+TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELHLTVRRHGKIYEQHYRHGVPDAPIAVTGDA-NNTGTQIWFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELS+LNS V I L D+RS R+ T Y+GGI+AFV +L++HK Sbjct: 177 TFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERS--QRQDTFHYEGGIQAFVEHLNKHK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + +DNI ++L+M+WND Y E + CFTNNIPQ+DGGTH++G R+ALTR + Sbjct: 235 TVITPVVFSMIAEKDNIVVELSMQWNDSYQETLYCFTNNIPQRDGGTHMAGFRAALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K S GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+SVVES V Sbjct: 295 NNYIEAEGYAKKAKVSPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKSVVESSV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ + +L E+P AK IV K++DA+ R+AARRAR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 SEKFNDFLLENPAIAKAIVSKIIDAARAREAARRAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQE+ TLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLASQEVATLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG D ++ +K+RYH+IIIMTDADVDG+HIRTLLLTFF+RQ L+ G++YI +PP Sbjct: 475 LGCGIGPDEYNPDKVRYHRIIIMTDADVDGSHIRTLLLTFFYRQTRELLERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK QYVKD+E+L DYL +L I+ L + + +++K+ Sbjct: 535 LYKVKRGKQEQYVKDDEALFDYLTQSALDGAAFYPAKDAPAITAMALEDLVQQFRRVEKI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWH---- 654 IK + + +++ V E +E V+ +L L I K+E+ Sbjct: 595 IKRYKRRYPTDILKRIAYLPVLQNEDFSQEEKIVNWCKQLHLSLQQIDSKTEQYQVEAHA 654 Query: 655 -GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + G+ + +S K +++ + + Sbjct: 655 LVDTNLFVPRIIVTQHGMDNYIPMTAEFFYSKDYKEMVALGSKLTSLVEEGSFVKRADKE 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + + L + ++G ++QRYKGLGEMN QLWETT++P R +L+V I D A Sbjct: 715 LAVENFEQALAWLMDEAKRGQTIQRYKGLGEMNPEQLWETTMDPAARRMLQVSIEDGVAA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +F+ LMGD VEPRR+FI+ N+L + +D+ Sbjct: 775 DAIFTTLMGDNVEPRRDFIESNALDAENIDV 805 >gi|330876358|gb|EGH10507.1| DNA gyrase subunit B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 805 Score = 914 bits (2363), Expect = 0.0, Method: Composition-based stats. Identities = 409/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++I+G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKYKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L + D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|330964178|gb|EGH64438.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 805 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 408/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++I+G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L + D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|297537200|ref|YP_003672969.1| DNA gyrase subunit B [Methylotenera sp. 301] gi|297256547|gb|ADI28392.1| DNA gyrase, B subunit [Methylotenera sp. 301] Length = 809 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 405/813 (49%), Positives = 540/813 (66%), Gaps = 14/813 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++N YD+ SI+IL+GLDAV+KRP MYIGDT SGLHHM++EVLDNAIDE Sbjct: 1 MAENQPELKPVSPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQ 111 +L G+ D I VT++ D S +VSDNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 ALAGHCDDIKVTIHSDNSISVSDNGRGIPTDIKDDDKHEPKRSAAEIVMTELHAGGKFDQ 120 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 SYKVSGGLHGVGVSVVNALS WL+L+I R+G +++M F G+ +PLV TG GT Sbjct: 121 NSYKVSGGLHGVGVSVVNALSDWLRLKIYRQGKVHQMEFQRGVAVSPLVQTG-TTEKRGT 179 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 EV FL S + F + +++++ L R+RELSFLN+ V+I L+D+R+ + Y GGI+ Sbjct: 180 EVHFLASVETFVLVEYHFEILAKRIRELSFLNNGVKIELVDQRTGKS--ENFAYSGGIKG 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV Y++R K L G +D ++I++AM+WND Y E V CFTNNIPQ+DGGTHL+G Sbjct: 238 FVEYMNRTKTVLHPKTFYAMGEKDGMTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLTG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LR+A+TR + Y+E+S +KK K GDD REG VLS+K+PDP+FSSQTK+KLVSSE Sbjct: 298 LRTAMTRTLNQYIEQSDIAKKAKVETTGDDMREGICCVLSVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ VV V+ L+ +L E+P +AKIIV KV+DA+ R+AAR+AR++TRRKGV+D LP Sbjct: 358 VQPVVSEVVSAKLAEFLAENPADAKIIVGKVVDAARAREAARKAREITRRKGVMDTMGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC ERDP K E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+L S Sbjct: 418 GKLADCQERDPAKCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLGS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 QEI TLITALGT IG+ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ Sbjct: 478 QEIATLITALGTSIGKADFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + +GK +Y+KD++ L+ YL+ +L VI+ L Sbjct: 538 GHIYIAQPPLYKVKQGKDERYLKDQQELDQYLLQSALKGAELTTKTGAEVITGAPLAEIA 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + +I+ +D++ + G + S +E A+KL L I Sbjct: 598 KQMVLTEAVIRRIAALYDESVLRAMQDLGEMSL-STKETTEIAAAKLRPILGAIGSDVIV 656 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + + + G + V++ + S + S ++ + Sbjct: 657 GFDKEAGAHRLEINKYVHGNLQCCVIDAEFLGSGDYRQISKMSVMLQGLLGEGALIKRGE 716 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + IT LD + + +++QRYKGLGEMN SQLWETT++P R LL+V+I DA Sbjct: 717 KEQTITTFKQALDWLLEEAKHNLNIQRYKGLGEMNPSQLWETTMDPTVRRLLKVQIDDAI 776 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI+ N+L LDI Sbjct: 777 AADEIFTTLMGDQVEPRRAFIESNALGVGNLDI 809 >gi|322506191|gb|ADX01645.1| DNA gyrase subunit B [Acinetobacter baumannii 1656-2] Length = 822 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSVHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|28867247|ref|NP_789866.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|213968438|ref|ZP_03396581.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1] gi|301384274|ref|ZP_07232692.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato Max13] gi|302063876|ref|ZP_07255417.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato K40] gi|302131959|ref|ZP_07257949.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850481|gb|AAO53561.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000] gi|213926726|gb|EEB60278.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1] gi|331017722|gb|EGH97778.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 805 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++I+G+ P+ + G + + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L + D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDVRLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|330987022|gb|EGH85125.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str. M301315] Length = 805 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|289628211|ref|ZP_06461165.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649101|ref|ZP_06480444.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 2250] gi|330870078|gb|EGH04787.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 805 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 408/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|193075924|gb|ABO10501.2| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 822 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYIHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|257485596|ref|ZP_05639637.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 805 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|237801661|ref|ZP_04590122.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024520|gb|EGI04576.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 805 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++I+G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGES-DSTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGPALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|296932705|gb|ADH93506.1| DNA gyrase subunit B [Pseudomonas sp. In5] Length = 807 Score = 914 bits (2361), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 542/810 (66%), Gaps = 12/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEE-NTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++I+G+ P+ + G + TGT++ F PS Sbjct: 120 HGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVGESE-TTGTQIHFKPSDL 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 179 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 237 TPVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 297 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 477 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++E+Y+ +L + + IS L ++D + K Sbjct: 537 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEEAPGISGEALERLVNDFRLVMKT 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E + + E D ++ RL + + K+ Sbjct: 597 LKRLSRLYPQELTEHFIYLPAVSMEQLSDHAAMQDWMARFEVRLRTVEKSGLVYKASLRE 656 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K ++ + K Sbjct: 657 DRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVVSLGAQLSTLLDDGAYIQRGERK 716 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L+ + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 717 KPVTEFKEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLKVTIEDAIGA 776 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 777 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 806 >gi|262371170|ref|ZP_06064491.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262313900|gb|EEY94946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 823 Score = 913 bits (2360), Expect = 0.0, Method: Composition-based stats. Identities = 413/814 (50%), Positives = 544/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L G+ Sbjct: 12 TEQTTEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHC 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 72 DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L+L I R G+I++ + +G PL V G+ + TGT V F PS++ Sbjct: 132 GVGVSVVNALSRKLELTIHRAGHIHQQEYKHGDPVYPLTVVGNT-DTTGTTVRFWPSAET 190 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y+++ K Sbjct: 191 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--HAEHVFDYEGGLSEFVKYINQGKT 248 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 249 HLNDIFHFTVQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 308 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 309 SYMENENLLKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 368 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 S +L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 369 KSFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 428 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 429 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 488 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G++YI +PPL Sbjct: 489 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 548 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E D+ I L N I D K + Sbjct: 549 YKLKKGKQEQYLKDNDALETYLISNAIDELELHISDAAPAIRGEALANVIADYQTSQKSL 608 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L L+ + Sbjct: 609 QRLTVRYPASVLDALISVEGFKLDQNHDRAYVEQWAEQVRSAVAEIQPSLRPELSLETFE 668 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + I + + ++L+ + S S L Sbjct: 669 KELADGQKIETYLPRITIYVHNLPHSYLLDAGLLGSGEYARLLKNSKSWFTLLEDGAYLQ 728 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 KI +T + I S R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 729 KGDRKIAVTNFHQVWQHILSDSRRGMMIQRYKGLGEMNADQLWETTMDPENRNMLQVTIQ 788 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 789 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 822 >gi|330961508|gb|EGH61768.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 805 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 408/810 (50%), Positives = 544/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRMGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|71735115|ref|YP_272319.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555668|gb|AAZ34879.1| DNA gyrase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320331107|gb|EFW87078.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race 4] gi|330881905|gb|EGH16054.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race 4] Length = 805 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 406/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + + D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLDQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|89052495|ref|YP_507946.1| DNA gyrase subunit B [Jannaschia sp. CCS1] gi|88862044|gb|ABD52921.1| DNA gyrase subunit B [Jannaschia sp. CCS1] Length = 805 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 465/797 (58%), Positives = 577/797 (72%), Gaps = 3/797 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y ADSI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DN IDE+L G+AD +TVT Sbjct: 9 DDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVTVT 68 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ D S +VSDNGRGIP +H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 69 LHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSV 128 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL+LRI R+G + F G PL V G+ TGTEV F+ S++ FS D+ Sbjct: 129 VNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMASTETFSNLDY 188 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + TL++RLREL+FLNS V+I L D+R E E +FY+GG+ FV YLDR K M+ P Sbjct: 189 VFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRSKTSAMEEP 248 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I I G +D+I +++AM WND YHENVL FTNNIPQ+DGGTHL+G R ALTR I Y + S Sbjct: 249 IFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRTINLYAQSS 308 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K S GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE VN+ L W Sbjct: 309 GIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLQEW 368 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EA++IV K+++A++ R+AAR+AR+LTRRK +DIASLPGKLADC E+DP KSEL Sbjct: 369 FEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGKLADCQEKDPSKSEL 428 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQGRSR NQA+LPLRGKILNVERARFD+ML SQEIGTLITALGTGIG+ Sbjct: 429 FLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLITALGTGIGR 488 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D F+I+KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +PPLY ++RG Sbjct: 489 DEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQPPLYKVSRG 548 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS Y+KDE +LEDYL+ Q + S I+ DL + A +++ F + Sbjct: 549 KSEVYLKDETALEDYLVAQGVEGASLRLS-SGEEIAGQDLARVVTGARNFKRILDAFPTH 607 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKR 666 + + +EQA ++G F+ +A +A RL+ +A + E+ W+G I + I + R Sbjct: 608 YPRRIVEQAALAGAFDAGKADADLQGVADDVAKRLDLVAVEYERGWNGRITQDHGIRLSR 667 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + RGV+E L+G+ + S ++ S Y +L I GP LL I Sbjct: 668 VLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGPTELLKAI 727 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 G KG MQRYKGLGEMN QLWETTL+ + R+LL+VKI D + ADD+F++LMGD VE Sbjct: 728 LDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTKLMGDVVE 787 Query: 787 PRREFIQENSLPS-ALD 802 PRREFIQ N+L LD Sbjct: 788 PRREFIQNNALSVENLD 804 >gi|50083301|ref|YP_044811.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ADP1] gi|49529277|emb|CAG66989.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp. ADP1] Length = 822 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 410/814 (50%), Positives = 536/814 (65%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+L I R G I+E + +G PL V G TGT V F PS D Sbjct: 131 GVGVSVVNALSSKLQLTIHRAGQIHEQEYQHGDPQYPLKVVGETS-TTGTTVRFWPSGDT 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVKIVLRDERV--NFEHIYAYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L S + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNDIFHFTADSDNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYLENENILKKEKVNVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE +LI+ ++ + I+ L IDD K + Sbjct: 548 YKLKKGKQEQYIKDNDALETFLISNAIDDLALHISAEAPAITGEALAKVIDDYKISQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + T ++ + F + + A +L + + Sbjct: 608 QRLTQRYPATLLDGLLEVEPFKADLSHDRPYVEQWAEQLGQVIAKLQPSLRPEVSLESFE 667 Query: 660 SD-----------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + + ++L+ + S S + L Sbjct: 668 RESPTGETSIHCWPRITVYVHNLPHHYLLDAGLLNSAEYARLLKNSKSWFKLLEEGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I+++ + I R+G+ +QRYKGLGEMNA QLWETT++PD R +L+V I Sbjct: 728 KGERRIQVSNFHQVWQQILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRHMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|85713968|ref|ZP_01044957.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A] gi|85699094|gb|EAQ36962.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A] Length = 813 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 462/805 (57%), Positives = 597/805 (74%), Gaps = 6/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++++ Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 12 TESVAPLEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 72 TAVEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L LRI R+ + + F NG PL V G A GTEVTFL S++ Sbjct: 132 GVGVSVVNALSSKLILRIWRKDKEHLIEFANGDALAPLKVVGDANGKRGTEVTFLASTET 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ ++++ TL+HRLREL+FLNS V I L D R R M Y+GG+ FV YLDR+KK Sbjct: 192 FTSVEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVVEFVKYLDRNKK 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 ++ PI I+ + IS++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 252 AMVADPIMIRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + ++K++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N Sbjct: 312 GYAD--AMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+AW EEHP EAK+IV KV++A+ R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G LYI +PPL Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPL 549 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS +Y+KDE +LEDYLI L + + DL ++DA I ++ Sbjct: 550 YKVTRGKSERYLKDERALEDYLIETGLD-DCVFKLATGEDRGGRDLLALVEDARVIRNVL 608 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINN 659 ++ + +++ IEQA I+GV N + + + A +A RL+ +A++ E+ W G Sbjct: 609 QNLHNRYNRKVIEQAAIAGVLNPRVTENLATANAAADYIAKRLDALADEVERGWTGRFAE 668 Query: 660 S-DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +R RGV+E +++ + + S ++ ++ +++E Y L + I G Sbjct: 669 GQGFFFERTVRGVKEVAMIDDALLGSADARKLDEYAAKLQEAYPRPGLLRRKDTETAIHG 728 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SL + + GRKG+++QRYKGLGEMN QLWETTL+ RSLL+VKI + +ADD+F+ Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDAGERSLLQVKIKEVDEADDIFT 788 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 +LMGD VEPRREFIQ+NSL + +D+ Sbjct: 789 KLMGDVVEPRREFIQDNSLSANVDV 813 >gi|119503576|ref|ZP_01625659.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080] gi|119460638|gb|EAW41730.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080] Length = 809 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 399/812 (49%), Positives = 542/812 (66%), Gaps = 14/812 (1%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+DN + +YD+DSI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L Sbjct: 1 MTDNSTQGSGNYDSDSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ I+V ++ D S +V D+GRGIPT++H EEG+SAAEVIMT LHAGGKF+ +YKVSG Sbjct: 61 GHCSKISVVIHPDESVSVGDDGRGIPTEMH-EEGVSAAEVIMTVLHAGGKFDDNTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS L+L I+R+G ++E + +G+ PL V G TGT V F PS Sbjct: 120 GLHGVGVSVVNALSEHLQLTIRRQGELHEQVYKHGVPVAPLAVVGETE-STGTSVRFKPS 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 ++ F+ +F++D L RLREL+FLNS V I L D+RS R T Y GG+ AFV +L++ Sbjct: 179 AETFTNIEFHFDILGKRLRELAFLNSGVCIELTDERSA--RTETYAYDGGLNAFVEFLNK 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + + + ++ +++A++WND + EN+LC+TNNIPQ+DGGTHL+G R+ALTR Sbjct: 237 GKNTINKVFHCETIADGDVGVEVALQWNDSFQENILCYTNNIPQRDGGTHLAGFRAALTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y+EK +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+ VE Sbjct: 297 TLNNYIEKESLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKPAVEQ 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + +L E+P +AK++V K++DA+ R+AAR+ARD+TRRKG LDIA LPGKLADC Sbjct: 357 SLGKIFGEYLLENPQDAKLVVGKMIDAARAREAARKARDMTRRKGALDIAGLPGKLADCQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP EL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKML S E+G ++ Sbjct: 417 ERDPALCELYLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVERARFDKMLGSAEVGNIV 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG+ F+ +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G +YI + Sbjct: 477 TALGCGIGKTEFNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGHVYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY +TRGK QY+KDE + ++YL +L I+ L + + Sbjct: 537 PPLYKLTRGKQSQYLKDEAAFDNYLTQNALEGAALYVNQDAPPITGEGLEALVKTYHAAE 596 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEK-----SEK 651 +I + T + Q + ++ Q S +L+ RL +++K +E Sbjct: 597 GVINRLCRVYAPTVLWQLPFIAPLDVDAMGDQPTMQSFCDELSERLQTVSDKAQNFSAEL 656 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + +V +I+ + + +L S S N+I Sbjct: 657 RQDPERGHWYPVVTQISHSIATEIILGRSFFASKDYATLVECGNKIRGLIEVSGYFKRGE 716 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + + + L + RKG ++QRYKGLGEMN QLWETT++PD R +L+V I DA Sbjct: 717 KQFQTQEFAAGLGWLLQEARKGTAVQRYKGLGEMNPGQLWETTMDPDVRRMLKVTIEDAI 776 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD+VEPRREFI+EN+L LD Sbjct: 777 LADQMFTTLMGDDVEPRREFIEENALAVENLD 808 >gi|298484612|ref|ZP_07002717.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160869|gb|EFI01885.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 805 Score = 913 bits (2359), Expect = 0.0, Method: Composition-based stats. Identities = 407/810 (50%), Positives = 545/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFNEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|90421533|ref|YP_529903.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18] gi|90103547|gb|ABD85584.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18] Length = 813 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 467/804 (58%), Positives = 597/804 (74%), Gaps = 6/804 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 13 EASAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V LN DGS TV D+GRGIP +HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 73 AVEVVLNADGSVTVRDDGRGIPVGIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L+LR+ R+G + + F +G PLVV G + GTEVTFL S + F Sbjct: 133 VGVSVVNALSSKLQLRVWRDGKEHFIEFAHGDAVAPLVVVGDSNGKRGTEVTFLASPETF 192 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + ++++ TL+HRLREL+FLNS V I L D R P + M Y+GG+E FV YLDR+KK Sbjct: 193 THIEYDFATLEHRLRELAFLNSGVTIVLSDLRHPVEKREEMMYRGGVEEFVKYLDRNKKA 252 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ +PI I + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 253 MVPAPIMIAAELNGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ Sbjct: 313 YAD--VIAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNE 370 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+AW EEHP EAKIIV KV++A R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP Sbjct: 371 ALAAWFEEHPAEAKIIVGKVIEAGAAREAARKARELTRRKGALDIASLPGKLADCQERDP 430 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALG Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALG 490 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D FDI+KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI GFLYI +PPLY Sbjct: 491 TGIGRDDFDISKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPSLIEGGFLYIAQPPLY 550 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TRGKS QY+KDE +LEDYLI L + S S DL ++DA +I + Sbjct: 551 KVTRGKSEQYLKDERALEDYLIETGLD-DCVFKLASGEDRSSRDLLALVEDARQIRGTLH 609 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INN 659 + + ++++ +EQA I+GV N ++ A+ +A RL+ +A++ E+ W G + Sbjct: 610 NLHSRYNRSVVEQAAIAGVLNPRVTADLATANEAAAYIARRLDALADEVERGWVGRFVEG 669 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +R RGV++ +++ + + S ++ ++ ++E Y L + I GP Sbjct: 670 EGFSFERTVRGVKDVAMIDAALLSSADARKLDEYAVNLQEAYPRPGILRRKDTETPIHGP 729 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 SL + + GRKG+++QRYKGLGEMN QLW TTL+ + RSLL+VK+ + +ADD+F++ Sbjct: 730 VSLFEAVTDAGRKGVALQRYKGLGEMNPEQLWHTTLDTNARSLLQVKVREVDEADDIFTK 789 Query: 780 LMGDEVEPRREFIQENSLPSALDI 803 LMGD VEPRREFIQ+NSL + +D+ Sbjct: 790 LMGDVVEPRREFIQDNSLSANVDV 813 >gi|169632033|ref|YP_001705769.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii SDF] gi|169150825|emb|CAO99425.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter baumannii] Length = 822 Score = 912 bits (2358), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ + S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEEESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQ-------------EINVSLASKLANRLNFIAEK 648 + + + ++ + F + + E L L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVEKLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|312958106|ref|ZP_07772629.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens WH6] gi|311287537|gb|EFQ66095.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens WH6] Length = 805 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 404/810 (49%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-TTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++E+Y+ +L + D IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGESLERLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E + + E D ++ RL + + K+ Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVSLEQLGDHAHMQDWLAQYEVRLRTVEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K ++ + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ LD + + K ++QRYKGLGEMN QLWETT++P R +LRV I DA A Sbjct: 715 KQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|77456232|ref|YP_345737.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1] gi|77380235|gb|ABA71748.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1] Length = 805 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 400/810 (49%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSE---ENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVKDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + TGT++ F SS+ Sbjct: 118 HGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSE-TTGTQIHFKASSE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++E+Y+ +L + + IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEDAPGISGEALERLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E + + E D ++ RL + + K+ Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVSLEMLGDHAKMQDWLAQYEVRLRTVEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 V+ I+ G+ S K ++ + K Sbjct: 655 DRERGVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDEGAYIQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|262374722|ref|ZP_06067994.1| DNA gyrase, B subunit [Acinetobacter junii SH205] gi|262310378|gb|EEY91470.1| DNA gyrase, B subunit [Acinetobacter junii SH205] Length = 822 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 411/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L L I+R G I+E + +G PL V G + TGT V F PS Sbjct: 131 GVGVSVVNALSKKLHLTIQRAGQIHEQEYCHGDPQYPLKVVGKT-DKTGTTVRFWPSELT 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS F+ D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFSVDILARRLRELSFLNAGVRIVLRDERV--NLENVYDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTTDADNGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYMENENLLKKEKVAVSGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAARRAR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARRAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADSPAITGEALAKVIADYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648 + + + ++ + F + + E S A +L + + + + Sbjct: 608 QRLTLRYPASLLDGLLELEAFKADHNHEREYVESWAEQLRAAIEKLQPSLRPEISLESFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E S + V + ++L+ + S + T L Sbjct: 668 RENSHGEKSVHYWPRVTVYVHNLPHSYLLDAGLLNSAEYARLLKNAKSWFTLLETGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I Sbjct: 728 KGDRRIQVNSFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|323516067|gb|ADX90448.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii TCDC-AB0715] Length = 822 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 406/814 (49%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLTIYRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQ++GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQDVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISADAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDALLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S + L Sbjct: 668 RENAQGEKSAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|226942154|ref|YP_002797228.1| DNA gyrase subunit B [Laribacter hongkongensis HLHK9] gi|226717081|gb|ACO76219.1| GyrB [Laribacter hongkongensis HLHK9] Length = 797 Score = 912 bits (2357), Expect = 0.0, Method: Composition-based stats. Identities = 397/802 (49%), Positives = 536/802 (66%), Gaps = 8/802 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y ADSI++LKGLDAV+KRP MYIGDT +GLHHM++EVLDN+IDE+L G+AD + Sbjct: 1 MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNSIDEALAGHADTV 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF+ SYK+SGGLHGVG Sbjct: 61 RVTINPDNSVSVEDNGRGIPTDIHPEEGRSAAEVIMTILHAGGKFDNNSYKISGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WL+L+I R+G ++EM F G PL VTG + GTEVTF+ S++ F Sbjct: 121 VSVVNALSDWLRLKIWRDGKVHEMEFRRGEPVAPLKVTGQTTH-RGTEVTFMASTETFGT 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +++YD L R+RELSFLN+ V I+L D+ + + GG+ FV Y++R+K L Sbjct: 180 IEYHYDILAKRIRELSFLNNGVGITLADRLHGKE--ENFAFSGGVAGFVEYMNRNKTVLH 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 G ++ +++++AM+WND Y ENV CFTNNIPQ+DGGTHL+ LR +TR + Y+ Sbjct: 238 PKVFHTIGDKEGMTVEVAMQWNDSYQENVQCFTNNIPQRDGGTHLTALRQVMTRTLNQYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E++ +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV +++ L Sbjct: 298 EENDIAKKAKVETTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEIISEAL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P++AK I K+++A+ R+AAR+AR++TRRKGV+D LPGKLADC E+DP Sbjct: 358 KTFLLENPVDAKTITGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPAL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDKM++SQE+ TLITA+GT Sbjct: 418 CELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMIASQEVATLITAMGTS 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + Sbjct: 478 IGKDDYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKL 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 GK +Y+KD+ L YL+ +L + + IS + L L +I+ Sbjct: 538 KHGKQERYLKDDSELNQYLLELALDNARLIPREGADPISGDTLGTLARQYLAARAVIERE 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 D ++ + + ES+ ++A L + L E + + + Sbjct: 598 SRVIDPLALDAMMRVPALSLESEAGARQTVA-VLEHALQQAPVTLEPVHDEKNDGWLVRI 656 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSL 722 G L+ + S R S+ + + ++I G+ ++ Sbjct: 657 VHHLHGNATTTYLDQDFLESADYTVLRQTSDLLA-GLIGPGAVIRRGESNGRTVSEFGMA 715 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 LD + R+G+S+QRYKGLGEMN QLWETT++P R LL+V+I DA ADD+F+ LMG Sbjct: 716 LDWLMGEVRRGMSIQRYKGLGEMNPGQLWETTMDPSVRRLLKVRIEDAMAADDVFTTLMG 775 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+L + +DI Sbjct: 776 DQVEPRRHFIESNALIARNIDI 797 >gi|330970328|gb|EGH70394.1| DNA gyrase subunit B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 805 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 405/810 (50%), Positives = 543/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDETLAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|302185843|ref|ZP_07262516.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae 642] Length = 805 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 404/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ E + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAGEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|229587582|ref|YP_002869701.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25] gi|229359448|emb|CAY46289.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25] Length = 805 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 403/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVGDSE-STGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++E+Y+ +L + D IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNDEAPGISGEALERLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E + + E D ++ RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFIYLPSVSLEQLGDHAHMQEWLAQYEVRLRTSEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K ++ + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLSTLLDDGAYIQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ LD + + K ++QRYKGLGEMN QLWETT++P R +LRV I DA A Sbjct: 715 KQVKEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|209363643|ref|YP_001423444.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111] gi|207081576|gb|ABS76986.2| DNA gyrase subunit B [Coxiella burnetii Dugway 5J108-111] Length = 810 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 400/812 (49%), Positives = 540/812 (66%), Gaps = 13/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD+ +I++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 3 MSVSAPQK-YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V DNGRGIPTD+H EEG SAAEVIMT LHAGGKF++ +YKVSGGL Sbjct: 62 CSHIWVTIHADCSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L + I++ GN+Y ++ G+ PL VTG + + TGTE+ F PS+ Sbjct: 122 HGVGISVVNALSEELYMTIRQNGNVYTQTYKMGVPQAPLAVTGKS-DKTGTEIRFKPSNA 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +F+YD L RLREL+FLN V+I L D+RS R Y+GGI+AFV +L++ K Sbjct: 181 IFSNTEFHYDILAKRLRELAFLNLGVRIELTDERSG--RGDIFEYEGGIKAFVEHLNKKK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ +++I +++AM+WNDG+ E + CFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 239 TPIHSDVFHFSTEKNDIVVEVAMQWNDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L +L E+P +A+II KV+DA+ R+AAR+ARD+TRRK VLD+ LPGKLADC E+ Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + K QYVKD+ +L+ L+ +L I + L N + Sbjct: 539 LYKVKKSKQEQYVKDDLALDALLLQLALDGAQFHPTPQAPAIQGSALENLAAHYRTAMRS 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + +++ + ++E ++ +L +LN ++ + Sbjct: 599 INRLGKRYPLYILKRLLNFPPLTVADLSEEEKVIAWTQRLEEQLNEPKTENSLRYQTAIK 658 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 +V I G+ +Q + ++ N+I ++ N Sbjct: 659 KDAERELYLPMVTIINHGIAQQHLFHQEFFGCADYRHLVDLYNKISGLIEPGAYIVRNDK 718 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + +T L+ G+KG+++QRYKGLGEMN QLWETT++ ++R LL V I DA Sbjct: 719 RRTVTHFGEALEWFIEEGKKGLNIQRYKGLGEMNPDQLWETTMDRESRRLLSVSIEDAVM 778 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRR FI++N+L LD+ Sbjct: 779 ADEIFTTLMGDQVEPRRLFIEQNALAVENLDV 810 >gi|307825353|ref|ZP_07655572.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96] gi|307733528|gb|EFO04386.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96] Length = 821 Score = 911 bits (2355), Expect = 0.0, Method: Composition-based stats. Identities = 400/806 (49%), Positives = 537/806 (66%), Gaps = 9/806 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 YD+ +IQ+LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L GY Sbjct: 19 TTAAPEYDSTNIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGYCKE 78 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + V ++ +GS +VSD+GRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGV Sbjct: 79 VRVIIHSNGSVSVSDDGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNAYKVSGGLHGV 138 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS L L +++ G +Y+ + G PL G A +GT + F PS++ F+ Sbjct: 139 GVSVVNALSEELNLEVRKNGQLYKQQYRMGNPVAPLAAVGPAE-GSGTLINFKPSTETFT 197 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+YD L RLRELSFLNS V+ISL D+RS R+ ++GGI AFV +L+++K PL Sbjct: 198 DVEFHYDILAKRLRELSFLNSGVRISLEDERSD--RQDVFEFEGGIGAFVVHLNKNKTPL 255 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 ++ + +++AM+WND Y ENV C+TNNIPQ+DGG+HL+G R ALTR I Y Sbjct: 256 FPEVFHFVAEKEGVVVEIAMQWNDSYQENVFCYTNNIPQRDGGSHLAGFRGALTRTINQY 315 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E S +KK+K GDD REG T+VLS+K+PDP+FSSQTK+KLVSSE++ +VES +N+ Sbjct: 316 IESSGLAKKEKVQTTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEIKPIVESTMNEK 375 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E P AK IV K+++A+ R+AAR+ARDLTRRK LDIA LPGKLADC E+DP Sbjct: 376 LQEFLLEKPQIAKAIVGKIVEAARAREAARKARDLTRRKTTLDIAGLPGKLADCQEKDPA 435 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SELFLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKM+SS+E+GTLITALG Sbjct: 436 LSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMISSEEVGTLITALGC 495 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D +++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQ+P ++ G++YI +PPLY Sbjct: 496 GIGKDEYNLAKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQLPEIVEKGYIYIAQPPLYK 555 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK YVKD+ L +YLI +L + S I L ++D + Sbjct: 556 VKKGKQEHYVKDDAQLNEYLIQLALDKAQLFTDVSAPPIQGQGLEKLAKLFTEVDSINNR 615 Query: 604 FYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSI---N 658 +D+ F+EQ V + E DQ+ + + RL K+ N Sbjct: 616 LSRRYDEIFLEQFAYMDVISDELKQDQQKLAAWFVDMEQRLTDCDSKAIYIVELDYKTSN 675 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + ++V + + + FVL + ++ + + + ++ Sbjct: 676 DFSVVVNKRLHAITKTFVLPSTFFNGKDYHKIAQYAKDTAGMFNEDSFMQMGERQQPVSN 735 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + + +KG +QRYKGLGEMN QLWETTL+ + R LL+V+I D AD++F+ Sbjct: 736 FKQAFEWMMKEIKKGQHIQRYKGLGEMNPEQLWETTLDSNNRRLLQVRIEDVIAADEIFT 795 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI +N+L LD+ Sbjct: 796 TLMGDVVEPRRDFIVKNALDVTNLDV 821 >gi|253995377|ref|YP_003047441.1| DNA gyrase subunit B [Methylotenera mobilis JLW8] gi|253982056|gb|ACT46914.1| DNA gyrase, B subunit [Methylotenera mobilis JLW8] Length = 805 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 402/809 (49%), Positives = 543/809 (67%), Gaps = 10/809 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N + YD+ SI+IL+GLDAV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G Sbjct: 1 MSENNAISPDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYK 115 + D I V ++ D S +VSDNGRGIPTD+ +++ SAAE++MT LHAGGKF+Q SYK Sbjct: 61 HCDDIKVIIHPDNSVSVSDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I R G +++M F G PL TG + GTEV F Sbjct: 121 VSGGLHGVGVSVVNALSDWLKLKIYRNGKVHQMEFRRGEAVAPLAETGVT-DKKGTEVHF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 L S + F + +++++ L R+RELSFLN+ V+I LID+R+ + Y GGI+ FV Y Sbjct: 180 LASVETFVLVEYHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAYSGGIKGFVEY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++R K L G +D ++I++AM+WND Y E V CFTNNIPQ+DGGTHL+GLR+A Sbjct: 238 MNRSKTVLHPKTFYASGEKDGMTIEVAMQWNDSYSETVQCFTNNIPQRDGGTHLTGLRTA 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR + Y+E+S +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ V Sbjct: 298 MTRTLNQYIEQSELAKKAKVETTGDDMREGITCVLSVKVPDPKFSSQTKDKLVSSEVQPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V L+ +L+E+P +AKII KV++A+ R+AAR+AR++TRRKGV+D LPGKLA Sbjct: 358 VSEIVAAKLAEFLQENPADAKIICGKVVEAARAREAARKAREITRRKGVMDTMGLPGKLA 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP E++LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+ARFDK+LSSQEI Sbjct: 418 DCQEKDPALCEIYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARFDKLLSSQEIA 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGT IG+ F KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ G +Y Sbjct: 478 TLITALGTSIGKADFSAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + +G+ +Y+KDE+ L+ YL+ +L S G++ L + Sbjct: 538 IAQPPLYKVKQGRDERYLKDEQELDIYLLQSALKNAELDTKTSAGILKDEALSAIAKQVV 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + +I+ +D++ + +G + ++ N ++A KL L + + ++ Sbjct: 598 LTEAVIRRISSLYDESVLRAIQDAGEIDLSTEASAN-AIAEKLRPILGAVGSEVIVAFDA 656 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N + + + G + V+ + S + SN + + N + Sbjct: 657 ETNAYRLEINKYVHGNLQCCVINAEFLNSGDYRQLLKTSNMLNGLVGAGAIVKRNDKEQT 716 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I+ LD + + +++QRYKGLGEMN QLWETT++P R LL+V+I DA AD+ Sbjct: 717 ISTFKQALDWLQGEAKNTLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADE 776 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGD VEPRR FI+ N+L LD+ Sbjct: 777 IFTTLMGDNVEPRRAFIESNALGVGNLDV 805 >gi|320321691|gb|EFW77790.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. B076] Length = 807 Score = 911 bits (2354), Expect = 0.0, Method: Composition-based stats. Identities = 408/813 (50%), Positives = 547/813 (67%), Gaps = 18/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 +K + + E V + + D E + + RL EKS + S+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLDQLSDHEGMQAWLALFDARL-RTGEKSGLVYKASLR 653 Query: 659 NSD--------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 V+ I+ G+ S K +I + Sbjct: 654 EDRERNVWLWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRG 713 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 K +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA Sbjct: 714 ERKKPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDA 773 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 AD +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 774 IGADQIFNTLMGDAVEPRRDFIESNALAVSNLD 806 >gi|167644129|ref|YP_001681792.1| DNA gyrase subunit B [Caulobacter sp. K31] gi|167346559|gb|ABZ69294.1| DNA gyrase, B subunit [Caulobacter sp. K31] Length = 830 Score = 910 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 449/810 (55%), Positives = 569/810 (70%), Gaps = 18/810 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 29 EVMTGDYSADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATK 88 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + V LN DGS TV+D+GRGIP D+H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGV Sbjct: 89 VEVILNADGSVTVTDDGRGIPVDIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGV 148 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND----------TGTEV 173 GVSVVNALS WL+L+I R G+ Y+M F G L TG + TGTEV Sbjct: 149 GVSVVNALSDWLELKIHRNGHSYQMRFERGDAVTSLAQTGDSPVRADGPKAGTTLTGTEV 208 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 TF PS + F+ +F+ TL+HRLREL+FLNS V I D R EP E + Y+GGIEAFV Sbjct: 209 TFYPSLETFAFIEFDRKTLEHRLRELAFLNSGVTIYFRDLRDAEPWEEKLHYEGGIEAFV 268 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +LD+ K PL++ PI I+G +D + +DLA+ WND YHE++LCFTNNIPQ+DGGTHLS R Sbjct: 269 RHLDKAKTPLLKMPIVIRGRKDKVEVDLALWWNDSYHEHMLCFTNNIPQRDGGTHLSAFR 328 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR IT+Y E S +KK+K +V G+D REG T VLS+K+PDP+FSSQTK+KLVSSEVR Sbjct: 329 GALTRIITNYAESSGITKKEKVNVGGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 388 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VE V +GL++W EEHP EAK IV K+ +A+ R+AAR+AR+LTRRK LDI SLPGK Sbjct: 389 PAVEGLVQEGLASWFEEHPNEAKAIVSKIAEAAAAREAARKARELTRRKSALDITSLPGK 448 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCSERDP KSE+F+VEGDSAGGSAKQ R+R+NQA+LPLRGKILNVERARFDKMLSS + Sbjct: 449 LADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQ 508 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGTLITALG GIG+D F+ +K+RYHKI++MTDADVDGAHIRTLLLTFF+RQMP LI G+ Sbjct: 509 IGTLITALGAGIGRDDFNADKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGY 568 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +GKS +Y+KD+ ++ +L+++ + S + DL + Sbjct: 569 IYIAQPPLYKAAKGKSSRYLKDDFEMDAFLVDEGVDGAELDLA-SGERRTTQDLLALVQL 627 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 I IEQA ++G+F D A RL+ AE+ + W Sbjct: 628 CRSAKGNIDRLSQRAPAFAIEQAALAGLFGEAPDIAAA-------AKRLDLYAEEGDGPW 680 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 G ++ + KRI RGV E VL+ + + ++ + + E + Sbjct: 681 SGERGDTAYVFKRIRRGVTESVVLDDGLLHAADARRWAERATALAEVFSGPAIFRRKDKS 740 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + GP LL + GRKG+S+QRYKGLGEMN QLWETTL+ + R+LL+V++ A A Sbjct: 741 TTVRGPLDLLGAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDVEARTLLQVRVNHADDA 800 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DD+FSRLMGD VEPRREFIQEN+L + +D+ Sbjct: 801 DDMFSRLMGDLVEPRREFIQENALDAEVDV 830 >gi|188474273|gb|ACD49736.1| DNA gyrase subunit B [Vibrio mimicus] Length = 778 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 391/780 (50%), Positives = 533/780 (68%), Gaps = 10/780 (1%) Query: 22 DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81 DAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY I VT++ D S +VSD+GR Sbjct: 1 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIHEDNSVSVSDDGR 60 Query: 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141 GIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R Sbjct: 61 GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYR 120 Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201 G I+ ++ +G+ PL V G TGT V F PS+ F+ +F+YD L RLRELSF Sbjct: 121 GGKIHTQTYHHGVPQAPLSVVGETE-RTGTTVRFWPSAQTFTNIEFHYDILAKRLRELSF 179 Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260 LNS V I L D+R E ++ Y+GGI+AFV++L+R+K P+ + R++ IS++ Sbjct: 180 LNSGVSIRLTDER-EEDKKDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNQEREDGISVE 238 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y++K SKK + + GD Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFSKKAQAATSGD 298 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES +N+ L+ +L E+P EAK + Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLADFLAENPSEAKNVCS 358 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAK Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500 QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478 Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560 IIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDE+++ Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEDAMN 538 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 Y + ++ ++ L + KL++ + + + + Sbjct: 539 QYQVALAMDGAELHVNADAPALAGEPLEKLVQQYNAAIKLVERMSRRYPYAMLHELIYVP 598 Query: 621 VFNCE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQE 673 N + +D+ + +L +LN + + + +N V+ GV Sbjct: 599 RINADLCADKAAVEAWTQRLVEQLNAKEVGASQYSVLVEHNAELNVYLPKVQVRTHGVTH 658 Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733 +++L I S S ++ + I+ + L+ + R+G Sbjct: 659 EYLLSADLINSKEYAKLADLSEALDGLIEAGAFIKRGERVQPISSFAAALEWLIKESRRG 718 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +S+QRYKGLGEMN QLWETT++PDTR +++V I DA AD+LF+ LMGD+VEPRR F++ Sbjct: 719 LSIQRYKGLGEMNPDQLWETTMDPDTRRMMQVTIEDAVGADELFTTLMGDQVEPRRNFME 778 >gi|87121026|ref|ZP_01076918.1| DNA gyrase, B subunit [Marinomonas sp. MED121] gi|86163864|gb|EAQ65137.1| DNA gyrase, B subunit [Marinomonas sp. MED121] Length = 807 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 409/810 (50%), Positives = 540/810 (66%), Gaps = 14/810 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I Sbjct: 1 MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TVSDNGRGIP ++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 NVTIHPDESITVSDNGRGIPVEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L L I+++G +YE + +G P+ V G A GT+V F PS+D FS Sbjct: 121 VSVVNALSESLTLTIRKDGKLYEQHYSHGDPLAPIAVIGDAE-ANGTQVHFKPSADTFSN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F YD L RLRELSFLNS V I+L D+RS + + Y GG+ +FV +L+ +K P+ Sbjct: 180 IKFYYDILAKRLRELSFLNSGVAINLKDERSGQE--ESFNYTGGLRSFVEHLNTNKTPIN 237 Query: 245 QSPIRIQGS---RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 Q I D I++++A++WN+G+ EN+ C+TNNIPQ+DGGTHL+G R+ALTR + Sbjct: 238 QIFHFICQRDDLDDGIAVEVALQWNEGFQENIYCYTNNIPQRDGGTHLAGFRAALTRTLN 297 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +++EK KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE ++ Sbjct: 298 AFIEKEGLGKKTKVATTGDDSREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEMS 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 LS +L E P EAKIIV K++DA+ R+AARRARDLTRRKG LDIA LPGKLADC E+D Sbjct: 358 RRLSEYLLESPGEAKIIVNKMIDAARAREAARRARDLTRRKGALDIAGLPGKLADCQEKD 417 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITAL Sbjct: 418 PALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITAL 477 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D F++ KLRYH I+IMTDADVDG+HIRTLLLTFFFRQMP +I G +YI +PPL Sbjct: 478 GCGIGRDEFNVEKLRYHSIVIMTDADVDGSHIRTLLLTFFFRQMPEVIERGHIYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y I RGK QY+KDE +LE +LI +LS D I L + D ++I I Sbjct: 538 YKIARGKQEQYLKDEAALEQHLIEVALSGAQMFVNDQAPGIQGEALAKIMHDYIEISDDI 597 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654 + + + + + ++ + +L + + + Sbjct: 598 DRMSRVYPTDVMGKLMYCTELTSDDLSNEAKVNAWTDELKALMPQDVRTGFRFEFKVDHD 657 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + V+ ++ GV + E + S + S+ I E + + Sbjct: 658 DERDLYLPAVEIMSHGVANHYRFEQTFFASAEYRRMVAMSDLINEIFTEESFIKRGERTQ 717 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + + + +G+++QRYKGLGEMN QLWETT++PD R +L+V I DA AD Sbjct: 718 HVDTVEDMKAWLMKEASRGMAIQRYKGLGEMNPDQLWETTMDPDARRMLQVSIDDAIAAD 777 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMGDEVEPRR FIQ+N+L LD+ Sbjct: 778 QMFTTLMGDEVEPRRNFIQDNALSVANLDV 807 >gi|83591344|ref|YP_425096.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170] gi|83574258|gb|ABC20809.1| DNA gyrase subunit B [Rhodospirillum rubrum ATCC 11170] Length = 802 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 455/803 (56%), Positives = 572/803 (71%), Gaps = 5/803 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y ++SI++LKGL+AV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GY D Sbjct: 1 MTQQAYTSESIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDHS 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V LN DGS TV DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVG Sbjct: 61 EVILNGDGSVTVCDNGRGIPVDIHREEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WL LRI R+G + + F +G + PL V G G+ TGTE+TFL S IF++ Sbjct: 121 VSVVNALSDWLDLRIWRDGKEHYVRFEHGEVVAPLKVVGDCGDRTGTEITFLASPAIFAI 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++Y TL+HRLREL+FLNS V++ L DKR EPR Y GGIE FV YLD+ K L Sbjct: 181 TTYDYATLEHRLRELAFLNSGVRLLLTDKRGTEPRTTKFHYDGGIEEFVRYLDKSKTVLH 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ G RD + ++L++ W D YHE VLCFTNNIPQ+DGGTH++G R LTR + SY Sbjct: 241 SPPVTAIGERDGMIVELSLEWTDSYHETVLCFTNNIPQRDGGTHMAGFRGGLTRTLNSYA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + S KK+K ++ GDD REG T VLS+K+PDP+FSSQTKEKLVSSEVR VVE+ V + L Sbjct: 301 QDSGLMKKEKVTLTGDDMREGLTCVLSVKVPDPKFSSQTKEKLVSSEVRPVVEAVVVERL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 WLEEHP EA+ I+ KV++A+ R+AARRAR+LTRRKG LD+ASLPGKLADC RDP + Sbjct: 361 GQWLEEHPQEARKIIGKVVEAAAAREAARRARELTRRKGALDMASLPGKLADCQNRDPAQ 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R QAILPLRGKILNVERARFDKMLSS EIGTLI ALGTG Sbjct: 421 SELFIVEGDSAGGSAKQGRDRGYQAILPLRGKILNVERARFDKMLSSAEIGTLIAALGTG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FD+ K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP ++ G+LYI +PPLY Sbjct: 481 IGKDDFDVGKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEVVEKGYLYIAQPPLYRA 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RG S QY+KD+ LEDYL++ L E + ++ DLR ++ A I Sbjct: 541 KRGNSEQYLKDDRELEDYLLDTGLD-ETVYTTAAGVQMAGPDLRALVERARLARNAIAAM 599 Query: 605 YPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINN-SD 661 +EQA ++G F+ E +D + A+ +A R++ + E+ W G++ Sbjct: 600 GRKVPWVLLEQAAVAGAFHTEIVNDDARASAAAADVARRIDALESPLERGWTGTLAAGGG 659 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 ++ +R RGV E V++ I S ++ + + E Y L I GP + Sbjct: 660 MVFQRTLRGVTETHVIDPQVIHSTEARRLDSMAAALREFYEQPGRLRIKDGDQIIPGPMT 719 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L++ + + GRKGI++QRYKGLGEMN QLWETTL+P+ R LL+VK+ S A+D+FS LM Sbjct: 720 LINAVMAAGRKGIAIQRYKGLGEMNPEQLWETTLDPNVRRLLQVKVNQVSDAEDVFSTLM 779 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPRR+FIQ+N+L LD+ Sbjct: 780 GDIVEPRRDFIQDNALNVQNLDV 802 >gi|253997716|ref|YP_003049779.1| DNA gyrase subunit B [Methylovorus sp. SIP3-4] gi|253984395|gb|ACT49252.1| DNA gyrase, B subunit [Methylovorus sp. SIP3-4] Length = 799 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 394/801 (49%), Positives = 535/801 (66%), Gaps = 8/801 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YD+ SI+IL+GLDAV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ D I V Sbjct: 2 TDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVI 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ++ D S +VSDNGRGIPTD+ ++ SAAE++MT LHAGGKF+Q SYKVSGGLHGV Sbjct: 62 IHPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WLKL+I R G +++M F G PL +TG GTEV FL S + F Sbjct: 122 GVSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPLAITG-TTERKGTEVHFLASIETFG 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + +F+++ L R+RELSFLN+ V+I LID+R+ + + GG+ FV Y++R K L Sbjct: 181 LVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P G +D ++I+++M+WND Y E V CFTNNIPQ+DGGTHL+GLR+A+TR + +Y Sbjct: 239 HPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTAMTRTLNNY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E++ +KK K GDD REG T VLS+K+P+P+FSSQTK+KLVS EV+ VV+ V Sbjct: 299 IEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSGEVQPVVQEVVAAK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P++AK+I K++DA+ RDAAR+AR++TRRKG +D LPGKLADC ERDP Sbjct: 359 LAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQERDPT 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITA+GT Sbjct: 419 KCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITAMGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D F +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ G +YI +PPLY Sbjct: 479 GIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK +Y+KD++ L+ YL+ SL L + ++ L + + +I+ Sbjct: 539 VKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGGETLAGEQLAEIAKQMVLTEAVIRR 598 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +D++ + + ++A KL L + + + Sbjct: 599 LASLYDESVLRALQNVEGTVELDTEANANAVAEKLRPLLGHTGSEVIVAQDLETGTYRLE 658 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V + G + V++ + S + S ++ S+ ++ + L Sbjct: 659 VNKYVHGNLQSCVVDTDFLASGDYRQISKMSVMLQGLLGEGASIKRGEKSQPVSNFKAAL 718 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + + +++QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F+ LMGD Sbjct: 719 DWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADEIFTTLMGD 778 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR FI+ N+L LDI Sbjct: 779 QVEPRRAFIESNALGVNNLDI 799 >gi|161618113|ref|YP_001592000.1| DNA gyrase subunit B [Brucella canis ATCC 23365] gi|260567232|ref|ZP_05837702.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161334924|gb|ABX61229.1| DNA gyrase, B subunit [Brucella canis ATCC 23365] gi|260156750|gb|EEW91830.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 813 Score = 910 bits (2352), Expect = 0.0, Method: Composition-based stats. Identities = 482/815 (59%), Positives = 621/815 (76%), Gaps = 14/815 (1%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSEMPEMNSEAPAEYGADSIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ++TVTLN DGSCTV+DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATLVTVTLNADGSCTVTDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WLKL+I+R G I+EMSF +G+ D PLVVTG AG++TGTEV+F Sbjct: 121 VSGGLHGVGVSVVNALSIWLKLKIRRAGKIHEMSFTHGVADAPLVVTGDAGSETGTEVSF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS D FS+ +F+Y+TL+ RLREL+FLNS V+I L D+R + +E + Y GG+ FV Y Sbjct: 181 LPSPDTFSMVEFDYETLERRLRELAFLNSGVRIKLADRRHADVKEQELHYDGGLVEFVKY 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D+ KK L++ PI I+ +D +++++AM WND YHE VLCFTNNIPQ+DGGTHL+G R A Sbjct: 241 IDQSKKSLLEEPIYIRSEKDGMTVEVAMWWNDSYHEKVLCFTNNIPQRDGGTHLAGFRGA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTRQIT Y + S +KK+K + GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR V Sbjct: 301 LTRQITGYADSSGMTKKEKVQLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE VN+ LS WLEEHP KI+V+KV+ A+ R+AAR+ARD+T RK L + SLPGKLA Sbjct: 361 VEGLVNEALSTWLEEHPAGGKIVVEKVIQAAAAREAARKARDIT-RKSNLSVTSLPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVER RFD+M+SS ++G Sbjct: 420 DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERVRFDRMISSDQVG 479 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLITALGT IG+ F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G Sbjct: 480 TLITALGTSIGKDETHGFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERG 539 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +TRGKS QY+K+E + ED+LI L E + + DLR+ ++ Sbjct: 540 HIYIAQPPLYKVTRGKSSQYIKNEAAFEDFLIETGLEETTLELVT-GEMRAGPDLRSVVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSE 650 DA + +L+ + +D++ +EQA I+G+ N + D A +A RL+ I+E++E Sbjct: 599 DARMLRQLLHGLHTRYDRSVVEQAAIAGLLNPDASRDNATAQHSADTVAKRLDMISEETE 658 Query: 651 KSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + W G + + +R+ RGV++ +L+ + + S ++ + R+ E ++ L Sbjct: 659 RGWSGHVMEDGGYRFERMVRGVKDIAILDMALLGSADARQVDRVAGRMAEIFMEPPVLRR 718 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++GP +LLD +F+ GRKG+++QRYKGLGEMNA QLWET L+P+ RSLL+VK+ D Sbjct: 719 KDKVESLSGPVALLDAVFATGRKGLTLQRYKGLGEMNAEQLWETILDPNVRSLLQVKVND 778 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+ AD LFSRLMGDEVEPRREFIQ+N+L LD+ Sbjct: 779 ATDADSLFSRLMGDEVEPRREFIQDNALNVANLDV 813 >gi|331011884|gb|EGH91940.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 805 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 406/810 (50%), Positives = 544/810 (67%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT L AGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLRAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS+D Sbjct: 118 HGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V + E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPISLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGLQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KPVTEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|289207191|ref|YP_003459257.1| DNA gyrase subunit beta [Thioalkalivibrio sp. K90mix] gi|288942822|gb|ADC70521.1| DNA gyrase, B subunit [Thioalkalivibrio sp. K90mix] Length = 810 Score = 910 bits (2351), Expect = 0.0, Method: Composition-based stats. Identities = 405/811 (49%), Positives = 549/811 (67%), Gaps = 13/811 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ + +YD+ I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 4 SEPLDPETYDSSQIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 63 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D + +VSDNGRGIP D+H+EEG SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 64 DTIEVTIHEDNAVSVSDNGRGIPVDIHEEEGKSAAEVILTVLHAGGKFDNNSYKVSGGLH 123 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L+L I R G +E + G+ D PL V GS + TGT + F PS +I Sbjct: 124 GVGVSVVNALSEELRLEIHRAGERHEQVYHLGVPDAPLAVAGST-DRTGTRIWFRPSDEI 182 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ +F+Y+ L RLRELSFLNS V+I+L D+R + RE T ++GGI AFV +L++ K Sbjct: 183 FTDIEFHYEILAKRLRELSFLNSGVRITLRDQR--DNREETFLFEGGIRAFVEHLNQKKT 240 Query: 242 PLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + I +R D+ +++A++WND Y EN+ C+TNNIPQ+DGGTH++G R+ALTR + Sbjct: 241 ALHPTVIYANQTREDDYVVEVALQWNDSYQENIFCYTNNIPQRDGGTHMAGFRAALTRTV 300 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+EK KK K + GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VES + Sbjct: 301 NQYLEKEGLIKKAKVATAGDDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKPIVESVL 360 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +D L+ +L E+P EAK I KVL+A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 361 SDALTNFLLENPPEAKAITDKVLEAARAREAARKAREVTRRKGALDIAGLPGKLADCQEK 420 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVERARFD+ML S E+GTLITA Sbjct: 421 DPAHSELYLVEGDSAGGSAKQGRDRHFQAILPLKGKILNVERARFDRMLGSAEVGTLITA 480 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D +D +KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G +YI +PP Sbjct: 481 LGCGIGKDEYDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGHVYIAQPP 540 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RGK QYV+DE + + +++ +L ++ + K + Sbjct: 541 LYKIKRGKREQYVRDEAEMGEIVVSLALDGAALHPGPDAPPVTGEAFEELVKGYQKAARA 600 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----SEKSWHGS 656 ++ +D + + + E N + + + L I+ + S Sbjct: 601 VERLGRLYDSRILWAMLEADAI-PEPRSVTNPDVQAWFSRILESISSDRAGATRYSLGPV 659 Query: 657 INNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N + + R+ G + ++ S + S R+ + + Sbjct: 660 TNVDGHAQLSLDRLEHGAALSQYITDDTLASRDFQTILDLSARLNALLESGAYIKRGERV 719 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +I G ++ + GR+G++ QRYKGLGEMN QLWETT+NP+TR LL+V++ DA +A Sbjct: 720 HRIQGFSEAMEWLLQEGRRGLATQRYKGLGEMNPEQLWETTMNPETRRLLQVRVEDAIRA 779 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD+VEPRR+FI+ +L + +D+ Sbjct: 780 DEIFTTLMGDQVEPRRDFIESRALSAENVDV 810 >gi|75674203|ref|YP_316624.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255] gi|74419073|gb|ABA03272.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255] Length = 813 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 462/805 (57%), Positives = 597/805 (74%), Gaps = 6/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++++ Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 12 TESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + V LN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 72 TAVEVILNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L LRI R + + F NG PL V G A GTEVTFL S++ Sbjct: 132 GVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRGTEVTFLASTET 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ ++++ TL+HRLREL+FLNS V I L D R R M Y+GG+ FV YLDR+KK Sbjct: 192 FTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVVEFVKYLDRNKK 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 ++ PI ++ + IS++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 252 AMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + +KK++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N Sbjct: 312 GYAD--AMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+AW EEHP EAK+IV KV++A+ R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G LYI +PPL Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPL 549 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS +Y+KDE +LEDYLI L + + DL +DDA I ++ Sbjct: 550 YKVTRGKSERYLKDERALEDYLIETGLD-DCVYKLATGEDRGGRDLLALVDDARVIRNVL 608 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-IN 658 ++ + +++ IEQA I+GV N + + + A +A RL+ +A++ E+ W G + Sbjct: 609 QNLHGRYNRGVIEQAAIAGVMNPRITENLATATAAADYIARRLDALADEVERGWVGRFVE 668 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +R RGV++ +++ + + S ++ ++ R++E Y L + I G Sbjct: 669 GQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRRDTETAIHG 728 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SL + + GRKG+++QRYKGLGEMN QLWETTL+ RSLL+VKI + +ADD+F+ Sbjct: 729 PVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEVDEADDIFT 788 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 +LMGD VEPRREFIQ+NSL + +D+ Sbjct: 789 KLMGDVVEPRREFIQDNSLSANVDV 813 >gi|77163566|ref|YP_342091.1| DNA gyrase, B subunit [Nitrosococcus oceani ATCC 19707] gi|254435249|ref|ZP_05048756.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27] gi|76881880|gb|ABA56561.1| DNA gyrase subunit B [Nitrosococcus oceani ATCC 19707] gi|207088360|gb|EDZ65632.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27] Length = 807 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 410/809 (50%), Positives = 542/809 (66%), Gaps = 13/809 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +++YD+ I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++ ++ D S T+SDNGRGIPTD+H+EEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 SIIIHSDDSITISDNGRGIPTDIHQEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS+ L L I R+G IY+ + G+ PLV G +GT + F PS IFS Sbjct: 122 VSVVNALSAVLFLEIHRDGKIYQQHYQEGVPQGPLVAVG-TTERSGTTIRFSPSPKIFSN 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++D RLREL+FLNS V+I L D+R R+ FY+GGI AFV +L+++K PL Sbjct: 181 IVFSFDIFAKRLRELAFLNSRVRILLEDERIG--RKEEFFYEGGISAFVEHLNKNKTPLH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + QG RD ++++LAM+WND Y E+ CFTNNIPQ+DGGTHL+G RSALTR + Y+ Sbjct: 239 GNVFYFQGERDGVAVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 EK +KK K GDD REG T+VLSIK DP+FSSQTKEKLVSSEV+ VV+S V++ Sbjct: 299 EKEALAKKTKVGTTGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKPVVDSLVSEHF 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L EHP++AK I K+++A+ R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP Sbjct: 359 QNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELFLVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G Sbjct: 419 SELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEVATLITALGCG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY + Sbjct: 479 IGREEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK QY++D+ +E YLIN S + I+ L D ++ + I+ Sbjct: 539 KRGKQEQYIRDDAEMERYLINLSTDNAKIYSENGATSIAGETLSTLFTDYFQLRRAIERL 598 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE---------KSEKSWHG 655 +D ++Q + V +D I + + A +L + + E + Sbjct: 599 SYRYDPLLLDQMLYLDVVPTPADPMIEIKQLEEWATQLEIRSNSAAKGNARYEIEVATVP 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + VK GV + S + + R+ + + + Sbjct: 659 ENSAPVLQVKITRHGVTAYQRIYMDFFTSPDYQRIQNLGKRLVNSVKAESYVQRGDRRQL 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + +D + R+G ++QRYKGLGEMN QLWETT+NP TR L +V+I D AD+ Sbjct: 719 VNDIQEAVDWLMEEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIDDVITADE 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +F+ LMGD VEPRR+FI+ ++L A LD+ Sbjct: 779 IFTTLMGDHVEPRRDFIESHALSVAHLDV 807 >gi|91974486|ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] gi|91680942|gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5] Length = 813 Score = 909 bits (2350), Expect = 0.0, Method: Composition-based stats. Identities = 465/799 (58%), Positives = 600/799 (75%), Gaps = 6/799 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A + V Sbjct: 18 AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVV 77 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 78 LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L LR+ R G + + F +G PL + G A GTEVTF S + F+ ++ Sbjct: 138 VNALSSKLILRVWRNGKEHIIEFAHGDAVAPLSMVGDANGRRGTEVTFFASPETFTHIEY 197 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V I L D R + M Y+GG+ FV YLDR+KKP++ +P Sbjct: 198 DFATLEHRLRELAFLNSGVNIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPAP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + + I +++A+ WN+ YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+ Y + + Sbjct: 258 IVLAADLNGIGVEVALWWNETYHENVLCFTNNIPQRDGGTHLAGFRAALTRQVNGYADSN 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW Sbjct: 318 --AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EAK+IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL Sbjct: 376 FEEHPSEAKVIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALGTGIG+ Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGR 495 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI GFLYI +PPLY +TRG Sbjct: 496 DDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRG 555 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS QY+KDE +LEDYLI+ L + I S S DL +++A + + + + Sbjct: 556 KSEQYLKDERALEDYLISTGLDDCIFRPA-SGEERSGRDLLALVENARIVRGTLHNLHSR 614 Query: 608 HDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664 ++++ +EQA I+GV N +I A+ +A RL+ +A++ E+ W G + Sbjct: 615 YNRSVVEQAAIAGVLNPRITSDIPTANEAAAYIARRLDALADEVERGWVGRFTEGEGFSF 674 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV++ +++ + + S ++ ++ ++E Y L + I GP SL + Sbjct: 675 ERTVRGVKDVAIIDDALLGSADARKLDEYAAILQEAYPRPGVLRRKDTETAIHGPVSLFE 734 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GRKG+S+QRYKGLGEMN SQLWETTL+ + RSLL+VK+ + +ADDLF++LMGD Sbjct: 735 AVTDAGRKGVSLQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDLFTKLMGDV 794 Query: 785 VEPRREFIQENSLPSALDI 803 VEPRREFIQENSL + +D+ Sbjct: 795 VEPRREFIQENSLSATVDV 813 >gi|316931400|ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1] gi|315599114|gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1] Length = 813 Score = 909 bits (2349), Expect = 0.0, Method: Composition-based stats. Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A + V Sbjct: 18 AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASAVEVI 77 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 78 LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L LR+ R+G + + F +G PL V G AG GTEVTF SS+ F+ ++ Sbjct: 138 VNALSSKLILRVWRDGKEHYIEFAHGDAVAPLSVVGDAGGRRGTEVTFYASSETFTNVEY 197 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V I L D R + M Y+GG+ FV YLDR+KKP++ +P Sbjct: 198 DFATLEHRLRELAFLNSGVNILLSDLRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+T Y + + Sbjct: 258 IVVAADLNGIAVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQLTGYADNN 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW Sbjct: 318 --AKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EAK IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL Sbjct: 376 FEEHPSEAKTIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+ Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G+LYI +PPLY +TRG Sbjct: 496 DDFDIGKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS QY+KDE +LEDYLI L + + + DL ++DA I + + + Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCVFKLATGEERGRRDLLKLVEDARAIRSTLNNLHSR 614 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664 ++++ +EQA I+GV + +I A+ +A RL+ +A++ E+ W G + Sbjct: 615 YNRSVVEQAAIAGVLSPRVTADIATANEAAAYIARRLDALADEVERGWIGRFTEGEGFAF 674 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV+E ++ + + S ++ ++ ++E Y L + I GP SL + Sbjct: 675 ERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKDAETAIHGPISLFE 734 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GRKG+++QRYKGLGEMN QLWETTL+ + RSLL+VK+ + +ADD+F++LMGD Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPGQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794 Query: 785 VEPRREFIQENSLPSALDI 803 VEPRREFIQENSL + +D+ Sbjct: 795 VEPRREFIQENSLHATVDV 813 >gi|262380670|ref|ZP_06073823.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164] gi|262297618|gb|EEY85534.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164] Length = 822 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 404/814 (49%), Positives = 545/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +++ Q +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 11 TEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+L ++R G I+E + +G+ PL V G TGT+V F PS++ Sbjct: 131 GVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTGTKVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLCDERI--NLEHVFDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 S +L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELFLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITAL Sbjct: 428 PALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ + I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDDLSLHVSADAPAINGQALAQVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLN--------FIAEKSEK 651 + T ++ + F + D+ +L +R+ ++ + + Sbjct: 608 HRLTLRYPATLLDGLLALEAFKMDQNHDESYVQQWGEQLRSRIADMQSSLRPELSLEKFE 667 Query: 652 SWHGSINNSDI---LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 +S + + + ++L+ + S S L Sbjct: 668 RIDADGQSSALYWPRITVYVHNLPHHYLLDAGLLGSAEYARLLKNSRSWFSLIEEGAYLE 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +++++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGERRVQVSNFHQVWQFILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|6116692|dbj|BAA85765.1| DNA gyrase subunit B [Pseudomonas aeruginosa] Length = 807 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 401/813 (49%), Positives = 550/813 (67%), Gaps = 16/813 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N ++YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MSEN---NTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I++T++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R ++E + +G P +G + +GTEV F PS + Sbjct: 118 HGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGGSAVPTARSGRRTDGSGTEVHFKPSPE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L R+RELSFLNS V I L D+R+ + Y+GG++AFV YL+ +K Sbjct: 178 TFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE--ELFKYEGGLKAFVEYLNTNK 235 Query: 241 KPLMQSPIR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + +Q D + +++A++WND ++EN+LCFTNNIPQ+DGGTHL+G RSALTR Sbjct: 236 TAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRN 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE Sbjct: 296 LNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQE 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E Sbjct: 356 MGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQE 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKMLSSQE+GTLIT Sbjct: 416 KDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +P Sbjct: 476 ALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + RGK QY+KD++++E+Y+ +L + + +S L +++ + Sbjct: 536 PLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIA 595 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +K + + E + + + ++ K RL AEKS ++ S+ Sbjct: 596 TLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTA-AEKSGLTYKASL 654 Query: 658 NNSD------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 V+ +A G+ S + + +++ + Sbjct: 655 REDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGE 714 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K I+ LD + + G K S+QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 715 RKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAI 774 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F+ LMGD VEPRR+FI+ N+L LD+ Sbjct: 775 AADQIFNTLMGDAVEPRRDFIESNALAVSNLDV 807 >gi|119947311|ref|YP_944991.1| DNA gyrase, B subunit [Psychromonas ingrahamii 37] gi|119865915|gb|ABM05392.1| DNA gyrase subunit B [Psychromonas ingrahamii 37] Length = 809 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 412/811 (50%), Positives = 549/811 (67%), Gaps = 14/811 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EVLDN+IDE+L G+ I Sbjct: 1 MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDETLAGFCTDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T++ DGS +V D+GRGIP D+H+EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 ITTIHTDGSVSVRDDGRGIPVDMHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L +KR G+IY+ ++I+G+ + P+ + G TGTE+ F PS + FS Sbjct: 121 VSVVNALSEKLRLTVKRHGHIYQQTYIHGVPEAPIAIIGDTE-QTGTELRFWPSKETFSD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V I L DKR E + Y+GGIEAFV+YL+++K P+ Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLFDKR-EEDKSDHFHYEGGIEAFVNYLNKNKTPIH 238 Query: 245 QSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q D ++++AM+WNDG+ EN+ CFTNNIPQKDGG+HL+G R ALTR + +Y Sbjct: 239 QKIFHFSTDHEDGTNVEVAMQWNDGFQENIYCFTNNIPQKDGGSHLTGFRGALTRTLNNY 298 Query: 304 VEKSF---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +EK + K+K + G D REG T+V+S+K+PDP+FSSQTK++LVSSEVR VVE + Sbjct: 299 MEKEMGKVKNAKNKTATEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEVRPVVEGAM 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EA+II K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC E+ Sbjct: 359 NEHLQEFLLENPAEARIITGKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGRSR+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 419 DPALSELYIVEGDSAGGSAKQGRSRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ K RYH IIIMTDADVDG+HIRTLLLTFFFRQMP LI NG++YI +PP Sbjct: 479 LGCGIGRDEYNPEKTRYHHIIIMTDADVDGSHIRTLLLTFFFRQMPELIENGYIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK YVKDE +++ +L ++ IS +L + I + Sbjct: 539 LYKIKKGKQEDYVKDEAAMQAFLTRLAMENSSLHINSDAPGISGIELESMIQRYRSVQDT 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 I + + + + ++ + + A+ + LN K+E Sbjct: 599 ITRLSRRYPSAMLNKLIYKPELTADNLANYSLVSEWANDIVATLNREDLGGTIYKTEVIK 658 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 ++++V GV ++ L+ S G K N I+ + + Sbjct: 659 SEDELTNNVIVIVRKHGVDNRYQLDEEFFGSSGYKSLVSLGNEIQNLLEEGAYIKRGERR 718 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ ++ + ++G+ +QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 719 KEVKNFIEAVNWLMHEAKRGLYIQRYKGLGEMNPGQLWETTMDPSARRMLQVTIQDAVGA 778 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LFS LMGD VEPRREFI++N+L + LDI Sbjct: 779 DQLFSTLMGDHVEPRREFIEKNALRAENLDI 809 >gi|86747132|ref|YP_483628.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2] gi|86570160|gb|ABD04717.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2] Length = 813 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 464/799 (58%), Positives = 598/799 (74%), Gaps = 6/799 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A + V Sbjct: 18 AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVV 77 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 78 LNADGSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L LR+ R G + + F +G PL V G A GTEVTF S + F+ ++ Sbjct: 138 VNALSSKLVLRVWRNGKEHIIEFAHGDAVAPLSVVGDANGRRGTEVTFFASPETFTHIEY 197 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V I L D R P + M Y+GG+ FV YLDR+KKP++ +P Sbjct: 198 DFATLEHRLRELAFLNSGVNIVLSDMRHPVEKREEMRYEGGVTEFVKYLDRNKKPMVPAP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + + I ++ A+ WN+ YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQ+ Y + + Sbjct: 258 IVLAADLNGIGVEAALWWNETYHENVLCFTNNIPQRDGGTHLAGFRAALTRQVNGYADSN 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW Sbjct: 318 --AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNEALAAW 375 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EAK+IV KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL Sbjct: 376 FEEHPAEAKVIVGKVIEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPSKSEL 435 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKML S++IGTLITALGTGIG+ Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLGSEQIGTLITALGTGIGR 495 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI GFLYI +PPLY +TRG Sbjct: 496 DDFDIAKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGFLYIAQPPLYKVTRG 555 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS QY+KDE +LE+YLI L + S V DL ++DA I + + + + Sbjct: 556 KSEQYLKDERALEEYLIATGLD-DCAFKIASGEVRGGRDLLALVEDARVIRQTLHNLHGR 614 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664 ++++ +EQA I+GV + ++ A+ +A RL+ +A++ E+ W G + Sbjct: 615 YNRSVVEQAAIAGVLSPRITSDVATANEAAAYIARRLDALADEVERGWIGRFVEGEGFHF 674 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV++ +++ + + S ++ ++ ++E Y L + I GP SL + Sbjct: 675 ERTVRGVKDVAMIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKDAETAIHGPVSLFE 734 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ + +ADD+F++LMGD Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794 Query: 785 VEPRREFIQENSLPSALDI 803 VEPRREFIQENSL + +D+ Sbjct: 795 VEPRREFIQENSLSATVDV 813 >gi|188474271|gb|ACD49735.1| DNA gyrase subunit B [Vibrio campbellii] Length = 778 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 383/780 (49%), Positives = 526/780 (67%), Gaps = 10/780 (1%) Query: 22 DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81 DAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +V+D+GR Sbjct: 1 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60 Query: 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141 GIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R Sbjct: 61 GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHR 120 Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201 G+I+ ++ +G PL V G + TGT++ F PS++ F+ +F+YD L RLRELSF Sbjct: 121 GGHIHTQTYHHGEPQAPLAVIGET-DQTGTQIRFWPSAETFTNIEFHYDILAKRLRELSF 179 Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260 LNS V I L+D+R + ++GGI+AFV +L+ +K P+++ R++ I+++ Sbjct: 180 LNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVE 238 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K SKK K + GD Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGD 298 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++ Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCS 358 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAK Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500 QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478 Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560 IIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDE+++ Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEDAMN 538 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 Y + +L ++ L + KL + + + + + Sbjct: 539 QYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLADRMSRRYPSALVHELIYTP 598 Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673 E D + +L +LN E H + + + GV Sbjct: 599 RLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVEQHEELGLNLPKIIVRTHGVTH 658 Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733 + L + S S ++ + ++ S L+ + R+G Sbjct: 659 DYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGERTQPVSSFASALEWLIKESRRG 718 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD LF+ LMGD+VEPRR F++ Sbjct: 719 LSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNFME 778 >gi|148555711|ref|YP_001263293.1| DNA gyrase subunit B [Sphingomonas wittichii RW1] gi|148500901|gb|ABQ69155.1| DNA gyrase subunit B [Sphingomonas wittichii RW1] Length = 826 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 448/830 (53%), Positives = 588/830 (70%), Gaps = 31/830 (3%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ +N +SY ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+ Sbjct: 1 MTNETENSPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----K 112 L G+ D I +TLN DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+ Sbjct: 61 LAGHCDRIVITLNPDGSVSVEDNGRGIPTGIHAEEGVSAAEVIMTQLHAGGKFDNTNDAN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 +YKVSGGLHGVGVSVVNALS L L I R+G + M F G PL V G A GT+ Sbjct: 121 AYKVSGGLHGVGVSVVNALSDVLDLTIWRDGEEHYMRFQRGDAVAPLKVVGPANGKKGTK 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 VTFLPS + F + +F++D L+HR REL+FLNS V++ L D+R E +EI +FY+GGI AF Sbjct: 181 VTFLPSPETFKITEFDFDKLEHRYRELAFLNSGVRLFLADERHAERKEIELFYEGGIAAF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YLDR K LM P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+ Sbjct: 241 VKYLDRTKVALMPDPVAIMGQRDDVGIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALTR + +Y EKS KK+K S+ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RAALTRTLNNYAEKSGALKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R +ES + D L+ WLEE+P A+ I++KV+DA+ R+AAR+AR+LTRRKGV+DIASLPG Sbjct: 361 RQPLESLMADKLAEWLEENPAHARSIIQKVIDAAAAREAARKARELTRRKGVMDIASLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP K ELFLVEGDSAGGSAKQGR R QAILPL+GKILNVERARFD+MLSS+ Sbjct: 421 KLADCQERDPSKCELFLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVERARFDRMLSSK 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 E+GTLI A+GTGIG+D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R M +I NG Sbjct: 481 EVGTLIQAMGTGIGRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMKPIIENG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LYI +PPLY + +G+S Y+KD+ +L++YL+ L + S +DLR ++ Sbjct: 541 HLYIAQPPLYKVAKGRSEVYLKDDAALDEYLVTGGLGAMMLETPSGAR--SGDDLRVLVE 598 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 A ++ L++ +D +E ++G + ES E + + A +A + I E + Sbjct: 599 HARRMRSLMRFVPKRYDPVIVEALALTGALDPESGDEGHRASARAVAAWMGRI--DPEAA 656 Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--- 708 W G + + ++R+ RGV + +++ + + S ++ + E+Y L+ Sbjct: 657 WSGDLAEDGGYHLQRLWRGVTDHHLIDPAFLRSAEARKLHALAAEQAESYARSARLVPLR 716 Query: 709 -----CNGDK---------IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754 D+ + P +LLD + + GRKG+S+QRYKGLGEMNA QLWETT Sbjct: 717 SAAAPTGDDEDEPIVDTRGTAVHQPSNLLDAVLAAGRKGMSIQRYKGLGEMNAEQLWETT 776 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+P R++L+V++ A AD++F+RLMGD VEPRREFIQEN+L LD+ Sbjct: 777 LDPANRAMLKVEVAQADVADEIFTRLMGDVVEPRREFIQENALSVANLDV 826 >gi|299133396|ref|ZP_07026591.1| DNA gyrase, B subunit [Afipia sp. 1NLS2] gi|298593533|gb|EFI53733.1| DNA gyrase, B subunit [Afipia sp. 1NLS2] Length = 809 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 484/805 (60%), Positives = 604/805 (75%), Gaps = 6/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN IDE L G+A Sbjct: 8 STSEPAAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHA 67 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + VTLN D S TV D+GRGIPTD+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 68 TRVEVTLNPDNSVTVYDDGRGIPTDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 127 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L LRI R + + F +G PLVV G A GTEVTFL S++ Sbjct: 128 GVGVSVVNALSSKLALRIWRNDKEHYIEFKHGDAVAPLVVVGDANGKRGTEVTFLASTET 187 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ D+++DTL+HRLREL+FLNS V I L DKR R + Y+GG+EAFV +LDR+KK Sbjct: 188 FTHTDYDFDTLEHRLRELAFLNSGVHILLSDKRHAVERREELHYEGGVEAFVKFLDRNKK 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 ++ +PI ++ ++ IS+++AM WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQIT Sbjct: 248 AVVDTPIVMRAEQNGISVEVAMWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQIT 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y E +KK+K S+ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N Sbjct: 308 GYAE--GMAKKEKISLTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLN 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 LSAWLEEHP EAK IV KV++A+ R+AAR+ARDLTRRKG LDIASLPGKLADC ERD Sbjct: 366 ASLSAWLEEHPTEAKTIVGKVIEAAAAREAARKARDLTRRKGALDIASLPGKLADCQERD 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL Sbjct: 426 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMPSLI G LYI +PPL Sbjct: 486 GTGIGRDDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPSLIEGGHLYIAQPPL 545 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS QY+KDE +LEDYLI L + I + DL+ ++DA I L+ Sbjct: 546 YKVTRGKSEQYLKDERALEDYLIETGLDDCILKLATGEE-RKGRDLQTLVEDARTIRGLL 604 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + +++ +EQA I+GV N D + + A +A RL+ +A++ E+ W G+ Sbjct: 605 ANIHSRYNRAVVEQAAIAGVLNPRVTADPQTANAAADYIAKRLDALADEVERGWSGTFTE 664 Query: 660 S-DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +R+ RGV+E VL+ + + S ++ + ++E Y L + I G Sbjct: 665 GQGFTFERMVRGVKEVAVLDDALLSSAEARRIDDLAASLQEAYPRSAMLRRKDSETAIHG 724 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SL + + GRKG++ QRYKGLGEMN +QLWETTL+ + RSLL+VKI + ADD+F+ Sbjct: 725 PVSLFEAVTDAGRKGVTYQRYKGLGEMNPNQLWETTLDTNARSLLQVKIREVDAADDIFT 784 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 +LMGD VEPRREFIQ+NSL + +D+ Sbjct: 785 KLMGDIVEPRREFIQDNSLDANVDV 809 >gi|88705397|ref|ZP_01103108.1| DNA gyrase subunit B [Congregibacter litoralis KT71] gi|88700487|gb|EAQ97595.1| DNA gyrase subunit B [Congregibacter litoralis KT71] Length = 804 Score = 908 bits (2347), Expect = 0.0, Method: Composition-based stats. Identities = 399/810 (49%), Positives = 544/810 (67%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD + +YD I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSD--ASENYDGSKIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +T++ D S +V D+GRGIPT++H +EG+SAAEVI+T LHAGGKF+ +YKVSGGL Sbjct: 59 CAKILITIHPDESVSVQDDGRGIPTEMH-DEGVSAAEVILTVLHAGGKFDDNTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L I R G +E + +G+ L G A N TGT + F PS++ Sbjct: 118 HGVGVSVVNALSEELWLTIWRGGRRFEQRYAHGVPQGALQDVGEA-NQTGTLIRFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F +D L RLREL+FLNS ++I L D+RS + FY+GG+ AFV YL+R+K Sbjct: 177 TFTNIEFEFDVLAKRLRELAFLNSGIEILLNDERSGKE--DRYFYEGGLNAFVDYLNRNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ ++ D +S+++A++WND Y EN+ C+TNNIPQ+DGGTHL+G RSALTR + Sbjct: 235 TPMHKAFHFQSEGDDGMSVEVALQWNDSYQENIFCYTNNIPQRDGGTHLAGFRSALTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VE + Sbjct: 295 NGYIEREGLAKKAKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ S +L E P EAK IV K+LDA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 NNRFSEYLLESPGEAKAIVTKMLDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D SE++LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKMLSS E+GTL+TA Sbjct: 415 DASLSEIYLVEGDSAGGSAKQGRNRRFQAILPLKGKILNVEKARFDKMLSSVEVGTLVTA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ FD +KLRYH IIIMTDADVDG+HIRTLLLTFFFRQM LI G ++I +PP Sbjct: 475 LGCGIGKEEFDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFFRQMRELIDRGHVFIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+ +L ++L + +L IS L + I ++ + Sbjct: 535 LYKVGKGKQHQYLKDDAALAEFLTSSALEGAALYVNADAPPISGESLADLIRQYHSVEAI 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK----SEKSWH 654 +K ++ + + + V D+ ++ RL + K S + Sbjct: 595 VKRRSRHYPEELVWELVFGPHLAEADLTDKAAVEQYCQAMSERLLTLKTKGTSYSVEPKT 654 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N LV+ IA GV+ L+ S + +E+ Sbjct: 655 DDEENWYPLVRMIAHGVERPIQLKPEFFRSKDYAAMVALGDTLEDLIDETGYFQRGEKTH 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + + L+ + + R+G +QRYKGLGEMN QLWETT++P++R +L+V + DA +AD Sbjct: 715 QTQNFVTGLEWLMAEARRGYYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTVDDAMRAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++F+ LMGD+VEPRREFI+EN+L LD+ Sbjct: 775 EIFTTLMGDQVEPRREFIEENALYVSNLDV 804 >gi|83642921|ref|YP_431356.1| DNA gyrase subunit B [Hahella chejuensis KCTC 2396] gi|83630964|gb|ABC26931.1| DNA gyrase, B subunit [Hahella chejuensis KCTC 2396] Length = 805 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 390/797 (48%), Positives = 535/797 (67%), Gaps = 11/797 (1%) Query: 15 IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74 I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY + +T++ D S Sbjct: 12 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKEVKITIHADESI 71 Query: 75 TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134 TVSD+GRGIP D+H+E G+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS Sbjct: 72 TVSDDGRGIPVDIHEEMGVSAAEVIMTMLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKE 131 Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194 L+L I+R+ ++E + +G+ PL V G + +GTEV F PS++ F+ +F+YD L Sbjct: 132 LRLTIRRDNKVHEQVYKHGVPQAPLSVVGET-DRSGTEVHFFPSAETFNNIEFHYDILAK 190 Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254 RLREL+FLNS V+I+L D+RS + T Y+GG+ AFV YL++ K P+ + ++ Sbjct: 191 RLRELAFLNSGVKITLHDERSAKT--ETFEYEGGLRAFVEYLNQTKNPINKVFHFLKERE 248 Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314 D +++++++WND + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY+EK KK K Sbjct: 249 DGTAVEVSLQWNDSFQENIFCFTNNIPQRDGGTHLAGFRAALTRSLNSYIEKESMLKKTK 308 Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE +N + +L E+P + Sbjct: 309 VATSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNAYFADFLAENPQD 368 Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434 AK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+DP SEL++VEGDS Sbjct: 369 AKNVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDS 428 Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494 AGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ FD+NK Sbjct: 429 AGGSAKQGRDRKTQAILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFDVNK 488 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYH IIIMTDADVDG+HIRTLLLTFFFRQM +I NG ++I PPLY + RGK QYVK Sbjct: 489 LRYHSIIIMTDADVDGSHIRTLLLTFFFRQMREIIENGHVFIAMPPLYKVKRGKQEQYVK 548 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614 DE++L+ YL +L I L + D +I+ + + + Sbjct: 549 DEKALQQYLTQSALENTQLFVNPDAPPIIGTALETLVTDYRTATGVIERMSRAYPRGVLN 608 Query: 615 QAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNSD-----ILVKRI 667 Q + E ++ + + L +L + + +++ V+ + Sbjct: 609 QLLYVPRLTQEQLKDKSAVETWVALLNEKLGYDNSTGNNYVISVVEDAERSLFLPQVELV 668 Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727 GV ++ S + +++ + I L + Sbjct: 669 QHGVDYKYTFNQDFFGSSSYTNIADMAEKLDGLVEAGAYVKRGEKTQAIETFDDSLVWLM 728 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 ++G+++QRYKGLGEMN QLWETT++P R +++V I DA AD +F+ LMGD+VEP Sbjct: 729 KEAQRGLNIQRYKGLGEMNPEQLWETTMDPAVRRMMKVTIEDAIAADQIFNTLMGDDVEP 788 Query: 788 RREFIQENSLPS-ALDI 803 RR+FIQ N+L LD+ Sbjct: 789 RRDFIQTNALSVMNLDV 805 >gi|90415375|ref|ZP_01223309.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207] gi|90332698|gb|EAS47868.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207] Length = 804 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 393/811 (48%), Positives = 538/811 (66%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D +YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MTD---EQNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I + ++ D S TVSDNGRGIPT++H +EG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CSEIKIVIHQDESITVSDNGRGIPTEMH-DEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R G ++E + +G PL + G + +GTEV F+PS+D Sbjct: 117 HGVGVSVVNALSVALRLTIRRNGKVHEQHYSHGEPQGPLTIVGDT-DVSGTEVHFVPSAD 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS F++D L RLRELSFLNS V+I L D+R+ + Y+GG+ AFV +L+ +K Sbjct: 176 TFSNIKFHFDVLAKRLRELSFLNSGVRIVLADERNGKE--EVYAYEGGLRAFVEFLNTNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D S+++A++WNDG+ EN+ C+TNNIPQ+DGGTHL+G RSALTR + Sbjct: 234 TTVNKVMHFSTQRDDGTSVEVALQWNDGFQENIHCYTNNIPQRDGGTHLAGFRSALTRGL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EK + K K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 294 NTYIEKEGINGKAKVATTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + +L E P +A+ +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 354 GEKFTEFLLEFPQDARAVVNKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 414 DPALSELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + F++ KLRYH ++IMTDADVDG+HIRTLLLTFFFRQM L+ G ++I +PP Sbjct: 474 LGCGIGAEEFNVTKLRYHTVVIMTDADVDGSHIRTLLLTFFFRQMRELVEQGHIFIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGKS +YVKD+++L +YL ++L + I L + + L Sbjct: 534 LYKVNRGKSEKYVKDDDALLEYLTAKALENAALYVNATAPGIKGTALEELVGKYRHVLGL 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEK-----SW 653 + + K +E V + + E + + L +L + + Sbjct: 594 VDRMSLVYPKEILEALVYTKKISAELLENAGDLAVWCADLQEKLENSDSGTHRYKVLVDE 653 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N +V+ A G+ +L + + + ++ + Sbjct: 654 DKEHNIFQPMVEITAHGIPNYHLLSRELFAANEYRAISGLGDVLQGLIEEGAYVQRGERN 713 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ LD + + R+GIS QRYKGLGEMN QLW+TT++PD R +LRV I DA A Sbjct: 714 AQVESFTEALDWLMAESRRGISTQRYKGLGEMNPGQLWDTTMDPDVRRMLRVTIEDAIAA 773 Query: 774 DDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 D +F+ LMGD+VEPRR+FI+ N+L LD+ Sbjct: 774 DQMFTTLMGDQVEPRRDFIETNALSVVNLDV 804 >gi|70733517|ref|YP_257156.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf-5] gi|68347816|gb|AAY95422.1| DNA gyrase, B subunit [Pseudomonas fluorescens Pf-5] Length = 805 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 402/810 (49%), Positives = 542/810 (66%), Gaps = 14/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSE---ENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ + + G + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVGDSE-TTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD++++EDY+ +L + + IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDDAMEDYMTQSALEDASLHLNEEAPGISGEALERLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E + E D +K RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFIYLPAVTMEQLSDHAAMQDWLAKYDARLRTSEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K ++ + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVSLGAQLSTLLDEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +T LD + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA A Sbjct: 715 KAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSMRRMLKVTIEDAIGA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 D +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 775 DQIFNTLMGDAVEPRRDFIESNALAVSNLD 804 >gi|187938361|gb|ACD38218.1| DNA gyrase subunit B [Vibrio harveyi] Length = 778 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 381/778 (48%), Positives = 522/778 (67%), Gaps = 10/778 (1%) Query: 22 DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81 DAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +V+D+GR Sbjct: 1 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGR 60 Query: 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141 GIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R Sbjct: 61 GIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHR 120 Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201 G+I+ ++ +G PL V G + TGT++ F PS++ + +F+YD L RLRELSF Sbjct: 121 GGHIHTQTYHHGEPQAPLAVIGDT-DQTGTQIRFWPSAETSTNIEFHYDILAKRLRELSF 179 Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260 LNS V I L+D+R + ++GGI+AFV +L+ +K P+++ R++ I+++ Sbjct: 180 LNSGVSIKLVDEREADKS-DHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVE 238 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + ++++K SKK K + GD Sbjct: 239 VAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTFMDKEGFSKKAKTATSGD 298 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++ Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESSMGEKLSEFLIENPTEAKMVCS 358 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K++DA+ R+AAR+AR++TRRKG LD+A LPGK ADC E+DP SEL++VEGDSAGGSAK Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKFADCQEKDPALSELYIVEGDSAGGSAK 418 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500 QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478 Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560 IIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDE+++ Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEDAMN 538 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 Y + +L ++ L + KL + + + + + Sbjct: 539 QYQVALALDNASLHVNAEAPALAGEALEKLVQQYNAGTKLADRMSRRYPSALVHELIYTP 598 Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673 E D + +L +LN E H + + + GV Sbjct: 599 RLTAEQCHDAAAVEAWTKQLVEQLNAKEVGASQYSFEVEQHEELGLNLPKIIVRTHGVTH 658 Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733 + L + S S ++ + ++ S L+ + R+G Sbjct: 659 DYALSIDLLNSKEYGKLADLSEALDGLLEEGAYIKRGERTQPVSSFASALEWLIKESRRG 718 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 +S+QRYKGLGEMN QLWETT++P+TR +++V I DA AD LF+ LMGD+VEPRR F Sbjct: 719 LSLQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNF 776 >gi|154245817|ref|YP_001416775.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2] gi|154159902|gb|ABS67118.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2] Length = 813 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 460/814 (56%), Positives = 594/814 (72%), Gaps = 12/814 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + + Y A SIQ+LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L Sbjct: 1 MAEPVPAASPDDYGAQSIQVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A +TVTLN DGS TV+D+GRGIPTD+HKEEG+SAAEVIMT+LHAGGKFNQ SYKVS Sbjct: 61 AGWAKEVTVTLNADGSVTVTDDGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFNQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFL 176 GGLHGVGVSVVNALS+ L L I R+G + M F +G + PL V G A + GT VTF Sbjct: 121 GGLHGVGVSVVNALSTTLDLTIWRDGKEHFMRFRHGDAEAPLKVVGDAPGDKRGTRVTFT 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS + F+ DF+Y TL+HRLREL+FLNS V I L D R+ + + + Y+GG+EAFV YL Sbjct: 181 PSPETFTKIDFDYATLEHRLRELAFLNSGVLIILTDARTADVKREELHYEGGVEAFVKYL 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K L+Q P+ I+ +D ++++ A+ WNDGYHEN+LCFTNNIPQ+D GTH +G +AL Sbjct: 241 DRSKSALLQKPVVIRAEKDGMTVEAALSWNDGYHENILCFTNNIPQRDRGTHFTGFAAAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TRQ+ Y S +KK+K G+DCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRQVIGYANTSGIAKKEKVDPTGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V++ LS W EE+P EAK ++ KV++A+ R+AAR+ARDLTRRK LD+ASLPGKLAD Sbjct: 361 ESLVSEALSVWFEENPAEAKNVIGKVVEAAAAREAARKARDLTRRKSPLDVASLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAKQGR R QA+LPLRGKILNVERARFDKMLSS++IGT Sbjct: 421 CQERDPAKSEIFIVEGDSAGGSAKQGRDRAFQAVLPLRGKILNVERARFDKMLSSEQIGT 480 Query: 477 LITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 LITALGTGIG+D FD+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP L+ Sbjct: 481 LITALGTGIGRDDGHSGGFDLAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELVDA 540 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G L+I +PPLY +TRGKS Y+KDE++LEDYLI L E V + +DL + + Sbjct: 541 GHLFIAQPPLYKVTRGKSETYLKDEKALEDYLITAGLDEASLHLAT-GEVRAGSDLAHVV 599 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN--RLNFIAEKS 649 + + ++ + +P +++ EQA ++G F + Q+ +A+ RL+ +A+++ Sbjct: 600 EVSRQMRAALGAMHPRYNRAVAEQAALAGAFGARTLQDEAAGIAAAAEVALRLDALADET 659 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E+ W G +++ R RGV E ++ + + S ++ + +E + L Sbjct: 660 ERGWTGLFDDAGYTFSRTVRGVAEVARIDHAFVASPEARRLDNLARDLEGVFTAACVLKR 719 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 D+ + G L D + GRKG+S+QRYKGLGEMN QLWETTL+ + RSLL+V++ + Sbjct: 720 KNDEQVLFGAVDLFDAVTDTGRKGLSLQRYKGLGEMNPEQLWETTLDVNARSLLQVRVKE 779 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 ADDLF+RLMGD VEPRREFIQEN+L +++D+ Sbjct: 780 VDAADDLFNRLMGDTVEPRREFIQENALRASVDV 813 >gi|255320699|ref|ZP_05361876.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82] gi|255302315|gb|EET81555.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82] Length = 822 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 404/814 (49%), Positives = 545/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +++ Q +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 11 TEHTQEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEILVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+L ++R G I+E + +G+ PL V G TGT+V F PS++ Sbjct: 131 GVGVSVVNALSSKLELTVQRAGQIHEQEYQHGVPQYPLRVVGQTE-RTGTKVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLCDERI--NLEHVFDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYLENENILKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 S +L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KAFSEYLLENPAAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELFLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITAL Sbjct: 428 PALSELFLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ + I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDDLSLHVSVDAPAINGQALAQVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLN--------FIAEKSEK 651 + T ++ + F + D+ +L +R+ ++ + + Sbjct: 608 HRLTLRYPATLLDGLLALEAFKMDQNHDESYVQQWGEQLRSRIADMQSSLRPELSLEKFE 667 Query: 652 SWHGSINNSDI---LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 +S + + + ++L+ + S S L Sbjct: 668 RIDADGQSSALYWPRITVYVHNLPHHYLLDAGLLGSAEYARLLKNSRSWFSLIEEGAYLE 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +++++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGERRVQVSNFHQVWQFILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|332188898|ref|ZP_08390603.1| DNA gyrase, B subunit [Sphingomonas sp. S17] gi|332011080|gb|EGI53180.1| DNA gyrase, B subunit [Sphingomonas sp. S17] Length = 830 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 445/834 (53%), Positives = 583/834 (69%), Gaps = 35/834 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Q + Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L G+ Sbjct: 1 MADTPQTNEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKV 116 D I + LN DGS +V+DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF + +YKV Sbjct: 61 CDRIDIQLNADGSVSVTDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFENTSDDNAYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTF 175 SGGLHGVGVSVVNALS +L L I R+G + M F +G PL V G A GT VTF Sbjct: 121 SGGLHGVGVSVVNALSEFLDLTIWRDGEEHYMRFAHGDAVAPLKVVGKAAPGQKGTRVTF 180 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LPS F + +F++D L+HR REL+FLNS V++ L D R EP+ + ++Y+GGI AFV + Sbjct: 181 LPSPATFKITEFDFDKLEHRYRELAFLNSGVRLFLTDARHEEPKTVELYYEGGIAAFVKW 240 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR K PL PI I G RD I +D+A+ WND Y+ENVL FTNNIPQ+DGGTH++ R+A Sbjct: 241 LDRSKSPLFPEPIAIHGQRDAIGMDVALEWNDSYYENVLAFTNNIPQRDGGTHIAAFRAA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y +KS KK+K ++ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR Sbjct: 301 LTRTLNNYADKSGLLKKEKVTLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQP 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +ES + D L+ WLEE+P A+ IV K++DA+ R+AA+RAR+LTRRKGV+DIASLPGKLA Sbjct: 361 LESLIADKLADWLEENPQNARAIVGKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSELFLVEGDSAGGSAKQGR+R QAILPLRGKILN ERARFD+M+SS+EIG Sbjct: 421 DCQERDPAKSELFLVEGDSAGGSAKQGRNRHFQAILPLRGKILNTERARFDRMISSKEIG 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI A+GTGIG+D F+ +KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP LI G LY Sbjct: 481 TLIQAMGTGIGRDDFNADKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIERGHLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY T+G+S Y+KD+ +L++YL+ +S + G S NDL+ +D A Sbjct: 541 IAQPPLYKATKGRSEVYLKDDTALDEYLVEAGVSTMVLE--GPGGARSGNDLKALVDHAR 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 ++ L++ +D + IE ++G + +E ++ + RL + E W Sbjct: 599 RMRILMRYVPRRYDASIIEVLALAGALDPVLTREQRMATVVETTRRLE--SGDHEARWSA 656 Query: 656 SI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI------ 708 + + + +R+ RGV + ++E S I S ++ + E++ L+ Sbjct: 657 RLTEDGGVHFERLWRGVTDHHIVEASFIASAEARKLHTLAAEQAESFAQAGKLVPLRSAA 716 Query: 709 ---------CNGD---------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 + + + ++ P LL+ I + GRKG+++QRYKGLGEMNA QL Sbjct: 717 TEPSADVVPTDEEGHSTTLARGETRVARPSQLLEAILTSGRKGLAIQRYKGLGEMNAEQL 776 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETTL+P RS+LRV D + AD++FSRLMG+ VEPRREFIQ+N+L LD+ Sbjct: 777 WETTLDPAVRSMLRVTSDDVAAADEVFSRLMGEVVEPRREFIQDNALNVANLDV 830 >gi|260553769|ref|ZP_05826039.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] gi|260405073|gb|EEW98573.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] Length = 822 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 407/814 (50%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G I+E + +G PL V G ++TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQIHEQEYHHGDPQYPLRVIGET-DNTGTIVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKN 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADADNGIAVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELALHISAEAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L + + Sbjct: 608 QRLTLRYPASLLDGLLEVDAFKADQNHDQAYVQQWADQVREAVQRLQPSLRPEITLETFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + V + ++L+ + S S L Sbjct: 668 RENAQGEKTAHYWPRVTVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFNLIEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|90408445|ref|ZP_01216605.1| DNA gyrase subunit B [Psychromonas sp. CNPT3] gi|90310429|gb|EAS38554.1| DNA gyrase subunit B [Psychromonas sp. CNPT3] Length = 809 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 409/811 (50%), Positives = 545/811 (67%), Gaps = 14/811 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E+LDN+IDE+L G+ + I Sbjct: 1 MAENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEILDNSIDEALAGHCNDI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T++ DGS +V D+GRGIP +HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VTTIHTDGSVSVRDDGRGIPVGIHKEEGVSAAEVIMTILHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS L L IKR+G++++ ++I+G + PL V G ++TGTE+ F PS + F+ Sbjct: 121 ISVVNALSKKLLLTIKRDGHVHQQTYIHGDPEAPLKVIGDT-DETGTEIRFWPSEETFAD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F Y+ L RLRELSFLNS V I LID+R E + Y+GGIEAFV YL++ K P+ Sbjct: 180 VLFYYNILAKRLRELSFLNSGVSIKLIDER-EEDKSDLFCYEGGIEAFVKYLNKSKTPIH 238 Query: 245 QSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q D +++AM+WNDG+ EN+ CFTNNIPQ+DGG+HL+G RS LTR + SY Sbjct: 239 QKIFHFNVENADGTCVEVAMQWNDGFQENIYCFTNNIPQRDGGSHLTGFRSGLTRTLNSY 298 Query: 304 VEKSF---GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +EK + K+K S G D REG T+V+S+K+PDP+FSSQTK++LVSSEVR VVES + Sbjct: 299 MEKEIAKVKNSKNKASTEGGDSREGLTAVISVKVPDPKFSSQTKDRLVSSEVRPVVESAM 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +L E+P EA+II K++DA+ R+AAR+ARD+TRRKG LD+A LPGKLADC E+ Sbjct: 359 GEKLQEFLLENPSEARIITSKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA Sbjct: 419 DPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI GF+YI +PP Sbjct: 479 LGCGIGRDEYNPDKTRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGFIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK YVKDE L+ YL ++ I+ L I + Sbjct: 539 LYKVKKGKQETYVKDESELQAYLTTLAMEGSSLHVNQEAPGINGVALEGLIARYRSVQDN 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEK-----SEKSW 653 IK + +++ + F E ++ + A+K++ LN + + + Sbjct: 599 IKRLKRRYPMALLDKLIYQNAFKVEDLGNEALAQEWATKVSTSLNSEDLEGTIFTNSVTI 658 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + ++ I G+ F+ + S G K I + + Sbjct: 659 AENPDDHKITFTIRKHGIDTDFIFDHRYFASEGYKAIVNIGKEITGLIEEGAYIQRGDRR 718 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 IT + + ++G+ +QRYKGLGEMN QL +TT++P+TR +L+V+I DA A Sbjct: 719 KDITSFVEAVQWLMHESKRGLYIQRYKGLGEMNPDQLCDTTMDPNTRHMLQVRIEDAVAA 778 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D LFS LMGD VEPRR FI+EN+L LDI Sbjct: 779 DQLFSTLMGDHVEPRRAFIEENALRVENLDI 809 >gi|163797313|ref|ZP_02191266.1| Type IIA topoisomerase [alpha proteobacterium BAL199] gi|159177404|gb|EDP61960.1| Type IIA topoisomerase [alpha proteobacterium BAL199] Length = 815 Score = 907 bits (2344), Expect = 0.0, Method: Composition-based stats. Identities = 459/818 (56%), Positives = 592/818 (72%), Gaps = 18/818 (2%) Query: 1 MSDNI-------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M+D ++ YDADSI++L+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAI Sbjct: 1 MADETLPENGNGGSNGYDADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE+L GY D + VTLN DGS TVSDNGRGIP D+H EEG+SAA+VIMT+LHAGGKF+Q S Sbjct: 61 DEALAGYCDAVMVTLNGDGSVTVSDNGRGIPVDMHSEEGMSAAQVIMTQLHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173 YKVSGGLHGVGVSVVNALS L LRI R+G + M F +G+ + LVV G A TGTEV Sbjct: 121 YKVSGGLHGVGVSVVNALSEILDLRIWRDGKEHFMRFRHGVPEADLVVVGPAP-QTGTEV 179 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 TF PS F++ DF+ TL+HRLREL+FLNS V+I L D R+ E + + + Y+GG++AFV Sbjct: 180 TFKPSKATFTMVDFDLPTLEHRLRELAFLNSGVRILLTDDRTAESKTVDLHYEGGLQAFV 239 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +YLDR + PL + + + G RD +++++AM W D YHE +LCFTNNIPQKDGG HL+G R Sbjct: 240 TYLDRARHPLHPTLM-MSGERDGMTVEVAMEWTDSYHETMLCFTNNIPQKDGGAHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTRQ+ SY + S +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ Sbjct: 299 AALTRQVNSYAQSSGIAKKEKVTLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVK 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VVE+ V D L W EEHP +AK +V K +A+ R+AARRARDLTRRKGVLDIA+LPGK Sbjct: 359 PVVENIVADKLQQWFEEHPADAKRVVAKAYEAAAAREAARRARDLTRRKGVLDIANLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC ERDP K+ELFLVEGDSAGGSAKQGR R++QAILPLRGKILNVERARFDKML+SQE Sbjct: 419 LADCQERDPAKAELFLVEGDSAGGSAKQGRHRKSQAILPLRGKILNVERARFDKMLASQE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGTLI ALGT IG + FDI KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP L+ G+ Sbjct: 479 IGTLIAALGTSIGPEEFDITKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELLERGY 538 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI +PPLY + RG Y+KD+ +LE +LI++ + I+ DL + Sbjct: 539 LYIAQPPLYRVKRGNEETYLKDDRALERFLIDEGTKGAVLTLST-GTQIAGVDLAAQAEL 597 Query: 594 ALKIDKLIKDFYPN-HDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFIAEKSE 650 A + +LI+ +EQA ++G SD E + A LA RL+ ++E+ E Sbjct: 598 ARQAKQLIEPLARRLGSSVVVEQAAVAGALGTGLLSDPETAQATAEYLARRLDALSEEHE 657 Query: 651 KSWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + W G ++ ++ R RGV E++ L+G+ + + ++ ++ +++ + S Sbjct: 658 RGWSGLFEETETGPALVFARTLRGVTERYRLDGAFLKTPEARSLDERASDLQDLFAKRAS 717 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + + GP L++ +F+IGRKG+++ RYKGLGEMN QLWETTL+PD R+LL+VK Sbjct: 718 MENKDGPRVVHGPIGLIEAVFAIGRKGLTVNRYKGLGEMNPGQLWETTLDPDRRTLLQVK 777 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + A +A ++FS LMGD VEPRREFIQ N+L LD+ Sbjct: 778 VAHADEAQEVFSTLMGDVVEPRREFIQTNALKVANLDV 815 >gi|257455167|ref|ZP_05620405.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60] gi|257447500|gb|EEV22505.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60] Length = 830 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 404/815 (49%), Positives = 543/815 (66%), Gaps = 16/815 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + +N +Y +DSI++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 19 SSHQENKAYGSDSIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 78 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLH Sbjct: 79 DQIDIIIHEDESVSVKDNGRGIPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLH 138 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L L I R+G Y ++ +G +P+ A TGT+V F PS DI Sbjct: 139 GVGVSVVNALSKKLVLDIWRDGYHYSQTYADGEPVSPIEQL-EATQQTGTQVRFYPSDDI 197 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ F+++ L RLRELSFLNS V+I L D+R + E + GG+ FV Y++ K Sbjct: 198 FTGTIFDFEILAKRLRELSFLNSGVRIVLTDERDDKRHE--FEHVGGLSEFVHYINAGKT 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + D IS+++A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + Sbjct: 256 GLNEVFHFTSEENDGISVEVALQWTDSYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY++ KK+K +V GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+ VES ++ Sbjct: 316 SYMDSENLMKKEKVAVTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKPAVESAMH 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D SA+L E+P AK I K++DA+ R+AAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 376 DKFSAYLLENPNAAKGIAGKIIDAARAREAARKAREMTRRKTTLDIAGLPGKLADCQEKD 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSSQE+GTLITAL Sbjct: 436 PAMSELYIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSSQEVGTLITAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG D ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQ P L+ G +YI +PPL Sbjct: 496 GTGIGPDEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELLERGHIYIAQPPL 555 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +G+ YVKD+E+L+ YL++ ++ + + ++ L + ++D + + Sbjct: 556 YKVKKGRQELYVKDDEALKAYLLSSTIDDTQLHLSEGTPAVTGQALESLLNDYNQTQTIK 615 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE--------KSEK 651 + ++ I+ + ++ + LA L A+ +S Sbjct: 616 NRLQIKYPSAVLDALAITSKLSIPMIEDEAQMQNWVEALAQNLAVTADGLDPQIELESFS 675 Query: 652 SWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 G V + ++L+ + I S +++ ++ + Sbjct: 676 KQEGDHQKTYYLPRVTIFIHQLPHAYLLDTAFIGSGEYSRLHRLTSQWKDMLSDTAYIAK 735 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 K+ I L I S R+G+++QRYKGLGEMNA QLWETT++P+ R +L+V I D Sbjct: 736 GDKKLPIKDMGYLWQFIMSDARRGLAIQRYKGLGEMNADQLWETTMDPENRHMLKVTIED 795 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A AD LFS LMGD+VEPRR FI+EN+L LDI Sbjct: 796 AIAADHLFSCLMGDDVEPRRAFIEENALTVTNLDI 830 >gi|255020212|ref|ZP_05292281.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756] gi|254970354|gb|EET27847.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756] Length = 801 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 411/808 (50%), Positives = 546/808 (67%), Gaps = 12/808 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD+ SIQ+L+GL+AV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MTEK-----YDSTSIQVLRGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V DNGRGIP D+H EEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 56 CDRILVTIHEDESVSVRDNGRGIPVDIHAEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L L+I R+G + + +G PL G A GTE+ F PS+ Sbjct: 116 HGVGVSVVNALSEYLHLQIDRDGYRWTQEYRDGEPLAPLQR-GEASRKRGTEIRFKPSAQ 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 +F+ F+++ L RLREL+FLNS V I L D+R E RE Y+GGI AFV +L+R K Sbjct: 175 VFADTHFHFEILARRLRELAFLNSGVHIQLRDER-GEGREEVFHYEGGIRAFVEHLNRSK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I + G+RD + ++ A++WN+GY+E+VLCFTNNIPQ DGGTHL+G R+ALTR + Sbjct: 234 NAIHPTVISLSGARDGVMVEAALQWNEGYNESVLCFTNNIPQADGGTHLAGFRAALTRTL 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E+ K K +V GDD REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VE+ + Sbjct: 294 NQYMEREGILAKAKVAVSGDDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVEASM 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +L+EHP EA+ I KV++A+ R+AARRAR+LTRRKG LDIA+LPGKLADC E+ Sbjct: 354 AEALGIFLDEHPREAQAIAAKVVEAARAREAARRARELTRRKGALDIANLPGKLADCQEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K E++LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFDKMLSS EIGTLITA Sbjct: 414 DPAKCEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDKMLSSDEIGTLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIGQ+ FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PP Sbjct: 474 LGTGIGQEDFDVTKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELVARGHVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK +Y+KD++ L YL ++ + ++S L I ++ + Sbjct: 534 LYKVKKGKDERYIKDDQELATYLRELAVQDARFETAAGGEIVSDEHLAALIRQYQGVEAV 593 Query: 601 IKDFYPNHDKTFIEQAV-ISGVFNCESDQEINVSLASKLANRLNFIA---EKSEKSWHGS 656 I+ + + ++ + A++L N L A E G Sbjct: 594 IERLARRYPTALLWALATVAPPASAMDAGAPWQDFAARLENILQGDALAGEHYRVQIVGG 653 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + + ++R G QEQ L+ S ++ R ++ ++E + ++ Sbjct: 654 DESPRLHIERRLHGSQEQRFLDADFFVSADYRHLRNYAEQVESRVGDGARIHRGDKSSEL 713 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + + + R+G+ +QRYKGLGEMN QLWETT+N D R L+RV + DA AD++ Sbjct: 714 RHFRQGMQWLLAQARQGVEIQRYKGLGEMNPEQLWETTMNADNRRLVRVDVEDAIAADEV 773 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FS LMGD VEPRR FI+EN+ LD+ Sbjct: 774 FSMLMGDAVEPRRRFIEENARFVSRLDV 801 >gi|88813027|ref|ZP_01128269.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231] gi|88789660|gb|EAR20785.1| DNA gyrase subunit B [Nitrococcus mobilis Nb-231] Length = 805 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 415/811 (51%), Positives = 545/811 (67%), Gaps = 14/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS S Y + I+IL+GLDAV+KRP MYIGDTD +GLHHM++EV DNA+DE+L G+ Sbjct: 1 MS---AQSEYGSAQIKILRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVADNAVDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV+DNGRGIP D+H EEG SAAEVIMT LHAGGKF+ +SYKVSGGL Sbjct: 58 CTEIEVMIHADNSVTVTDNGRGIPVDIHPEEGRSAAEVIMTMLHAGGKFDNRSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L IK+ G+I+ + +G PL G NDTGT+VTF PSS+ Sbjct: 118 HGVGVSVVNALSERLRLVIKKSGHIHLQEYRDGEPLAPLKQLGET-NDTGTQVTFHPSSN 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +FNYD L R RELSFLN V+ISL D+R+ + Y GGI AFV +L+++K Sbjct: 177 IFTNIEFNYDILAKRFRELSFLNPGVRISLKDERTDKE--DVFEYAGGIRAFVQHLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + + + + I++AM+WND Y EN+ CFTNNIPQ+DGGTH++G R+ALTR I Sbjct: 235 TPLHRDAFYLNFWKGPVGIEIAMQWNDSYQENIFCFTNNIPQRDGGTHMAGFRAALTRTI 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+E SKK K GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ VVES + Sbjct: 295 NQYMESEGYSKKAKLVPTGDDVREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKGVVESVL 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ WL EHP AK IV+KV++A+ RDAARRAR++TRRKGVLD+A LPGKLADC ER Sbjct: 355 AEHLNEWLYEHPGSAKAIVEKVIEAARARDAARRAREMTRRKGVLDVAGLPGKLADCQER 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSS E+GTLITA Sbjct: 415 DPARSELYLVEGDSAGGSAKQGRDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ FD +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM L+ G +YI +PP Sbjct: 475 LGCGIGKEEFDPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMVELVERGHIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK YVKDE+ L ++L+ +L++ I+ +L I L + Sbjct: 535 LYKVKRGKQEDYVKDEKELIEHLLCLALTDASLQPNAGVARITGEELEGLIRQYLATMDM 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEK-SEKSWHGSI 657 I D + V + ++ ++ S +L +N +E ++ Sbjct: 595 IDHLARRTDPNILRAMVDLPALDEDALRDGRRIDSWFQRLEEGVNRNQPTGTEYRVRVNL 654 Query: 658 NN----SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + D LV + G+ + S + R S + + + Sbjct: 655 SQNGSFHDALVTKRMHGILYPYTFSMQFFLSQEYETIRRLSEALADRLGADALVSRGQRS 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ +++ + ++G+S+QRYKGLGEMN +QLWETT++P R LL+V+I D + Sbjct: 715 KAVSEFHEVVNWLLDEAKRGLSVQRYKGLGEMNPAQLWETTMDPAARRLLQVRIEDVVAS 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DD+F+ LMGD+VEPRREFI+ N+L + LDI Sbjct: 775 DDIFTTLMGDQVEPRREFIENNALSASNLDI 805 >gi|300112751|ref|YP_003759326.1| DNA gyrase subunit B [Nitrosococcus watsonii C-113] gi|299538688|gb|ADJ27005.1| DNA gyrase, B subunit [Nitrosococcus watsonii C-113] Length = 807 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 412/809 (50%), Positives = 542/809 (66%), Gaps = 13/809 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +++YD+ I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I Sbjct: 2 KASTAYDSSHIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCDEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S T+SDNGRGIPTD+H+EEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 AVIVHSDDSITISDNGRGIPTDIHQEEGRSAAEVIMTVLHAGGKFDHNSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS+ L L I R+G +Y+ + G+ PLV G A +GT + F PS IFS Sbjct: 122 ISVVNALSAALFLEIHRDGKVYQQHYREGVPQEPLVAIG-ATERSGTTIRFSPSPKIFSN 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++D RLREL+FLNS V+I L D+R R+ FY+GGI AFV +L+++K PL Sbjct: 181 IVFSFDIFAKRLRELAFLNSKVRILLEDERIG--RKEEFFYEGGISAFVEHLNKNKTPLH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + QG RD ++++LAM+WND Y E+ CFTNNIPQ+DGGTHL+G RSALTR + Y+ Sbjct: 239 GNVFYFQGERDGVAVELAMQWNDSYQEHFFCFTNNIPQRDGGTHLAGFRSALTRTLNQYI 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 EK +KK K GDD REG T+VLSIK DP+FSSQTKEKLVSSEV+ VV+S V++ Sbjct: 299 EKEGLTKKTKVGTSGDDAREGLTAVLSIKAQDPKFSSQTKEKLVSSEVKPVVDSLVSEHF 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L EHP++AK I K+++A+ R+AAR+AR+LTRRKG LD+A LPGKLADC ERDP Sbjct: 359 QNFLLEHPVDAKAIGGKMIEAARAREAARKARELTRRKGALDMAGLPGKLADCQERDPTL 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELFLVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+ TLITALG G Sbjct: 419 SELFLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLSSVEVATLITALGCG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ ++ ++LRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY + Sbjct: 479 IGREEYNPDRLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKV 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK QY++D+ +E YLIN S + + I +L + D ++ I+ Sbjct: 539 KRGKQEQYIRDDAEMERYLINLSTDNAKIYSENGETYIGGEELSTLLTDYFQLRYAIERL 598 Query: 605 YPNHDKTFIEQAVISGVF----NCESDQEINVSLASKLANRLNFIAE-----KSEKSWHG 655 +D + Q + + + + A++L R N A+ + E + Sbjct: 599 SYRYDPLLLNQMLYLDAVPTPTDPMIEIKQLEEWATQLEARSNNAAKGNARYEIEVTTVP 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + VK I GV + S + R + + + Sbjct: 659 ENHVPVVQVKVIRHGVTAYQRICMDFFASPDYQRIRDLGKHLVNAIKAESYVQRGDRQQL 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + ++ + R+G ++QRYKGLGEMN QLWETT+NP TR L +V+I D AD+ Sbjct: 719 VNDIQEAINWLMGEARRGQAVQRYKGLGEMNPDQLWETTMNPATRRLSQVRIDDVIAADE 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +F+ LMGD VEPRR+FI+ N+L A LDI Sbjct: 779 IFTTLMGDHVEPRRDFIESNALNVAHLDI 807 >gi|325123497|gb|ADY83020.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter calcoaceticus PHEA-2] Length = 822 Score = 906 bits (2342), Expect = 0.0, Method: Composition-based stats. Identities = 404/814 (49%), Positives = 538/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G ++E + +G PL V G + +GT V F PS Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGTTVRFWPSELT 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + F + + + A + L ++ A + Sbjct: 608 QRLTLRYPASLLDALLEVEAFKSDQNHDEAYVQQWADQVRDIITRLQPSLRPEISLEAFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + + + ++L+ + + S S L Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFTLLEDGAFLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|148251634|ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] gi|146403807|gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1] Length = 812 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 455/804 (56%), Positives = 588/804 (73%), Gaps = 7/804 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA Sbjct: 13 EPATANDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYAS 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V LN D S TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 73 RVEVVLNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L+LRI RE + + F +G PL V G A GTEVTFL S++ F Sbjct: 133 VGVSVVNALSSKLQLRIWREDKEHLIEFAHGDAVAPLKVVGEAQGRRGTEVTFLASTETF 192 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +++Y TL+HRLREL+FLNS V I L D R + MFY GG+E FV YLDR+KK Sbjct: 193 KMVEYDYATLEHRLRELAFLNSGVHIVLSDMRHAVEKREEMFYSGGVEEFVRYLDRNKKA 252 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ SPI ++ + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 253 IVPSPIMVRSEVNGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ Sbjct: 313 YADAH--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINE 370 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LSAW EEHP EAK +V KV+ A+ R+AAR+AR+LTR+ + +IASLPGKLADC E+DP Sbjct: 371 ALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNPLNNIASLPGKLADCQEKDP 430 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKMLSS++IGTLITALG Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLSSEQIGTLITALG 490 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D F I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM +I G LYI +PPLY Sbjct: 491 TGI-SDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLY 549 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TRGKS QY+KDE +LEDYLI L + DL +++A + +++ Sbjct: 550 KVTRGKSEQYLKDERALEDYLIGTGLD-DCVFKSAEGEERKGRDLLALVEEARIVRNILR 608 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-INN 659 + + +D+T +EQA I+GV + ++I + A +A RL+ +A++ E+ W G + Sbjct: 609 NLHSRYDRTVVEQAAIAGVLRADITRDIATADAAAEYIAKRLDVLADEVERGWIGHFVEG 668 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +R RGV++ V++ + + S ++ ++ R++E Y L I GP Sbjct: 669 QGFTFERTVRGVKDVAVIDDALLASADARKLDDYAARLQEAYAKPGFLRRGDAPTVIHGP 728 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L + + GRKGI+MQRYKGLGEMN QLWETTL+ + R+LL+VK+ + +ADD+F++ Sbjct: 729 IDLFEAVTDAGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKVKEVDEADDIFTK 788 Query: 780 LMGDEVEPRREFIQENSLPSALDI 803 LMGD VEPRREFIQ+NSL + +D+ Sbjct: 789 LMGDVVEPRREFIQDNSLSANVDV 812 >gi|293611381|ref|ZP_06693677.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826253|gb|EFF84622.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 822 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 405/814 (49%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G ++E + +G PL V G + +GT V F PS Sbjct: 131 GVGVSVVNALSSKLHLIINRAGQVHEQEYHHGDPQYPLRVIGET-DSSGTTVRFWPSELT 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADTENGIGVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASK-----------LANRLNFIAEK 648 + + + ++ + VF + + + A + L ++ A + Sbjct: 608 QRLTLRYPASLLDALLEVEVFKSDQNHDEAYVQQWADQVRDIITRLQPSLRPEISLEAFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + + + ++L+ + + S S L Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFTLLEDGAFLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|192288437|ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1] gi|192282186|gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1] Length = 813 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A + V Sbjct: 18 AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASRVEVI 77 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 78 LNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L LR+ R + + F +G PL V G A GTEVTF S++ F+ ++ Sbjct: 138 VNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEY 197 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V I L D R + M Y+GG+ FV YLDR+KKP++ +P Sbjct: 198 DFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQIT Y E Sbjct: 258 VVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAE-- 315 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 GSKK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW Sbjct: 316 AGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAW 375 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL Sbjct: 376 LEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPAKSEL 435 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+ Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G+LYI +PPLY +TRG Sbjct: 496 EDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS QY+KDE +LEDYLI L + + V DL ++DA I + + + Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSR 614 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664 ++++ +EQA I+GV + +I A+ +A RL+ +A++ E+ W G + Sbjct: 615 YNRSVVEQAAIAGVLSPRITTDIATANEAAAYIARRLDALADEVERGWVGHFTEGEGFRF 674 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV+E ++ + + S ++ ++ ++E Y L + I GP SL + Sbjct: 675 ERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFE 734 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ + +ADD+F++LMGD Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794 Query: 785 VEPRREFIQENSLPSALDI 803 VEPRREFIQENSL + +D+ Sbjct: 795 VEPRREFIQENSLHATVDV 813 >gi|197106831|ref|YP_002132208.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1] gi|196480251|gb|ACG79779.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1] Length = 812 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 465/820 (56%), Positives = 584/820 (71%), Gaps = 25/820 (3%) Query: 1 MSDNIQN----------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLD 50 MS+ + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+D Sbjct: 1 MSEENETPENGNGGNGQGEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD 60 Query: 51 NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110 NAIDE+L G+A + V LN DGSCTV+D+GRGIPTD+H+ EG+SAAEVIMT+LHAGGKF+ Sbjct: 61 NAIDEALAGHATKVEVILNADGSCTVTDDGRGIPTDIHEGEGVSAAEVIMTQLHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG---- 166 Q SYKVSGGLHGVGVSVVNALS +LKL++ R G +EM F G PL VTG A Sbjct: 121 QNSYKVSGGLHGVGVSVVNALSDFLKLKVFRGGMQHEMEFRRGDAVAPLAVTGKAPLRDN 180 Query: 167 --NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 TGT VTFLPS+ F +F+ TL+HRLREL+FLNS V I L D R EP E M Sbjct: 181 GEFLTGTHVTFLPSTATFRFIEFDLKTLEHRLRELAFLNSGVTIWLKDLRGAEPFEEVMH 240 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 Y+GGIEAFV +LD+ K PLM+ PI ++G +D + +D+A+ WNDGYHENVLCFTNNIPQ+D Sbjct: 241 YEGGIEAFVRHLDKAKHPLMKEPIVVRGRKDTVEVDMALWWNDGYHENVLCFTNNIPQRD 300 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTHL+ RSALTR IT+Y E+S +K++K SV G+D REG T VLS+K+PDP+FSSQTK Sbjct: 301 GGTHLAAFRSALTRIITNYAEQSGAAKREKVSVSGEDAREGLTCVLSVKVPDPKFSSQTK 360 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 +KLVSSEVR VE V++GLS W EEHP EAK+IV+K+ +A+ R+AAR+AR+LTRRK Sbjct: 361 DKLVSSEVRPAVEGLVSEGLSTWFEEHPNEAKLIVQKITEAAAAREAARKARELTRRKSA 420 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 LDI SLPGKLADC E+DP KSELFLVEGDSAGGSAKQ R+RENQAILPLRGKILNVERAR Sbjct: 421 LDITSLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQARNRENQAILPLRGKILNVERAR 480 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 FDKMLSS ++GTLITALG GIG+D FDI KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQ Sbjct: 481 FDKMLSSDQVGTLITALGAGIGRDDFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQ 540 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 MP +I G+LYI +PPLY T+GKS +Y+KD+ LE YL+++ + S ++ Sbjct: 541 MPEVIDRGYLYIAQPPLYKATKGKSSRYLKDDAELEAYLVDEGTDGAMLELA-SGERLAG 599 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 DL ++ + I+ IEQA ++G+F D A R + Sbjct: 600 QDLLRLVNASRTARANIQRLSARAPAFAIEQAALAGLFGEGGDPAAA-------ARRFDL 652 Query: 645 IAEKSEKSWHGSINN-SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 AE+ + W G + R+ RGV E+ VL+ + + ++ + + E + Sbjct: 653 YAEEGDGPWSGERGEGGGYVFSRVKRGVSERVVLDDVLLHAADARRIAERAKELAETFSG 712 Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + + GP L++ + GR+G+S+QRYKGLGEMN QLWETTL+ D R+LL Sbjct: 713 PATFTRKERTAVVRGPLDLVNAVMENGRRGLSIQRYKGLGEMNPEQLWETTLDADARTLL 772 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +VK+T A ADD+F+RLMGD VEPRREFIQEN+L + +D+ Sbjct: 773 QVKVTHADDADDMFTRLMGDLVEPRREFIQENALDAEVDV 812 >gi|146337179|ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278] gi|146189985|emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278] Length = 812 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 453/804 (56%), Positives = 593/804 (73%), Gaps = 7/804 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYA Sbjct: 13 EPATANEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYAT 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V LN D S TV D+GRGIP +HK+EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 73 RVEVVLNADNSVTVRDDGRGIPVGIHKDEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L+LRI RE + + F +G PL V G + GTEVTFL S++ F Sbjct: 133 VGVSVVNALSSKLELRIWREDKEHLIEFAHGDAVAPLRVVGESKGKRGTEVTFLASTETF 192 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +++Y TL+HRLREL+FLNS V I L D R + MFY GG+E FV YLDR+KK Sbjct: 193 KMVEYDYATLEHRLRELAFLNSGVHIILSDMRHAVEKREEMFYSGGVEEFVKYLDRNKKA 252 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ +PI ++ + I+++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 253 IVPNPIMVRSEANGITVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E + +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ Sbjct: 313 YAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINE 370 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LSAW EEHP EAK +V KV+ A+ R+AAR+AR+LTR+ + +IASLPGKLADC E+DP Sbjct: 371 ALSAWFEEHPSEAKTVVGKVIQAAAAREAARKARELTRKNPLNNIASLPGKLADCQEKDP 430 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKMLSS++IGTLITALG Sbjct: 431 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLSSEQIGTLITALG 490 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D F I+KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM +I G LYI +PPLY Sbjct: 491 TGI-SDDFSIDKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRQIIDRGHLYIAQPPLY 549 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TRGKS QY+KDE +LEDYLI L + + D + DL +++A + +++ Sbjct: 550 KVTRGKSEQYLKDERALEDYLIGTGLDDCVFRTADGEE-RKGRDLLALVEEARLVRNILR 608 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNFIAEKSEKSWHGS-INN 659 + + +D+ +EQA I+GV + ++I + A +A RL+ +AE+ E+ W G + Sbjct: 609 NLHSRYDRKVVEQAAIAGVLRGDITRDIATADAAAEYIAKRLDVLAEEVERGWIGHFVEG 668 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +R RGV++ V++ + + S ++ ++ R+++ Y +L + I GP Sbjct: 669 QGFTFERTVRGVKDVAVIDDALLASADARKLDDYAARLQDAYAKPGALRRGDTQTVIHGP 728 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L + + GRKGI+MQRYKGLGEMN QLWETTL+ + R+LL+VK+ + +ADD+F++ Sbjct: 729 VDLFEAVTDSGRKGIAMQRYKGLGEMNPQQLWETTLDTEARTLLQVKVKEVDEADDIFTK 788 Query: 780 LMGDEVEPRREFIQENSLPSALDI 803 LMGD VEPRREFIQ+NSL + +D+ Sbjct: 789 LMGDVVEPRREFIQDNSLSANVDV 812 >gi|308447343|ref|XP_003087405.1| hypothetical protein CRE_12456 [Caenorhabditis remanei] gi|308256863|gb|EFP00816.1| hypothetical protein CRE_12456 [Caenorhabditis remanei] Length = 822 Score = 905 bits (2340), Expect = 0.0, Method: Composition-based stats. Identities = 409/814 (50%), Positives = 540/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEPTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +V+DNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEILVTIHEDESVSVADNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L+L I R G+I++ + +G PL + G TGT V F PS++ Sbjct: 131 GVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKIVGDVE-TTGTIVRFWPSTET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y+++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERVA--LEHVFDYEGGLSEFVKYINQGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTTQAENGIGVEVALQWNDTYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 SYMENENLLKKEKVAVTGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 S +L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KAFSEYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G++YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELELRVNAEAPAIRGVALEKVIADYQTSQKSL 607 Query: 602 KDFYPNHDKTFIEQA--VISGVFNCESDQEINVSLASKLANR-----------LNFIAEK 648 + + T ++ + + DQ+ KL L+ + Sbjct: 608 QRLTVRYPATLLDGLLSLEHFKLDQNHDQDYVQQWGEKLRAAIETTQPSLRPVLSLESFD 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + + ++L+ + S K S L Sbjct: 668 KETADGLKTTIYFPRITIYVHNLPHSYLLDAGLLASGEYKRLLQNSKSWFTLLEEGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 KI ++ + I + R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGERKINVSTFHQVWQHILTDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +F+ LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFACLMGDDVEPRRAFIEENALNADID 821 >gi|39933084|ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] gi|39652709|emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009] Length = 813 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 467/799 (58%), Positives = 599/799 (74%), Gaps = 6/799 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A + V Sbjct: 18 AEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASRVEVI 77 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+HK EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 78 LNADGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L LR+ R + + F +G PL V G A GTEVTF S++ F+ ++ Sbjct: 138 VNALSSKLLLRVWRNDKEHYIEFAHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEY 197 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ TL+HRLREL+FLNS V I L D R + M Y+GG+ FV YLDR+KKP++ +P Sbjct: 198 DFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R+ALTRQIT Y E Sbjct: 258 VVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAE-- 315 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 GSKK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ L+AW Sbjct: 316 AGSKKEKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAW 375 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEEHP EAKI++ KV++A+ R+AAR+AR+LTRRKG LDIASLPGKLADC ERDP KSEL Sbjct: 376 LEEHPSEAKIVIGKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPAKSEL 435 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITALGTGIG+ Sbjct: 436 FIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGR 495 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G+LYI +PPLY +TRG Sbjct: 496 EDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRG 555 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 KS QY+KDE +LEDYLI L + + V DL ++DA I + + + Sbjct: 556 KSEQYLKDERALEDYLIATGLD-DCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSR 614 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGSINNSD-ILV 664 ++++ +EQA I+GV + +I A+ +A RL+ +A++ E+ W G + Sbjct: 615 YNRSVVEQAAIAGVLSPRITTDIATANEAAAYIARRLDALADEVERGWVGHFTEGEGFRF 674 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 +R RGV+E ++ + + S ++ ++ ++E Y L + I GP SL + Sbjct: 675 ERTVRGVKEVAAIDDAMLGSADARKLDEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFE 734 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GRKG+++QRYKGLGEMN SQLWETTL+ + RSLL+VK+ + +ADD+F++LMGD Sbjct: 735 AVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDV 794 Query: 785 VEPRREFIQENSLPSALDI 803 VEPRREFIQENSL + +D+ Sbjct: 795 VEPRREFIQENSLHATVDV 813 >gi|260463130|ref|ZP_05811332.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075] gi|259030980|gb|EEW32254.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075] Length = 823 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 494/825 (59%), Positives = 618/825 (74%), Gaps = 24/825 (2%) Query: 1 MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MSD I+N++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSDQIENTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---------GSAG 166 VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G D PL VT G+ Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKVTGAYEQDKQPGTYE 180 Query: 167 NDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 +G+E+TF PSS+ F++ +F++ TL+HRLREL+FLNS V+I L D R + + Y Sbjct: 181 GRSGSEITFFPSSETFTMVEFDFGTLEHRLRELAFLNSGVRIVLTDARHADVLRHELHYD 240 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GG+E FV YLDR KKPL+ PI I+ RD I++++AM WND YHENVL FTNNIPQ+DGG Sbjct: 241 GGLEEFVKYLDRVKKPLIDKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 THL+G R ALTRQIT Y + S +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K Sbjct: 301 THLAGFRGALTRQITGYGDSSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 LVSSEVR VVE VN+ L WLEEHP E K+++ KV+ A+ R+AAR+ARD+T RK L Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +ML S IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G LYI +PPLY +TRGKS QY+K+E + E++LI L E S V + D Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIGSGLEEASL-ALGSGEVRAGQD 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644 LR+ IDDAL + +LI + +++ +EQA I+G N + ++ ++A ++A RL+ Sbjct: 599 LRSAIDDALAVRQLINGLHTRYNRGVVEQAAIAGGLNPDVFADLGRANAMAERVAQRLDI 658 Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 IAE +E+ W G + + +R R V+E L+ + I S ++ ++ R+ E Sbjct: 659 IAEDTERGWTGRMSTSNEGIGGYVFERTVRSVKEYAHLDMALINSADARQLDRYAQRLSE 718 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 Y T L ++GP +LL+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ Sbjct: 719 VYGTPPVLRRKDISETVSGPLALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L LDI Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823 >gi|299768254|ref|YP_003730280.1| DNA gyrase, B subunit [Acinetobacter sp. DR1] gi|298698342|gb|ADI88907.1| DNA gyrase, B subunit [Acinetobacter sp. DR1] Length = 822 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 401/814 (49%), Positives = 539/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L L I R G ++E + +G PL V G + +GT V F PS++ Sbjct: 131 GVGVSVVNALSRKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGTTVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + + I +++A++WN+ Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNEIFHFTADTDNGIVVEVALQWNESYQENVRCFTNNIPQKDGGTHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENIIKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALETYLISNAIDELSLHTNAEAPAITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648 + + + ++ + F + + + A ++ + + + + Sbjct: 608 QRLTLRYPASLLDALLEVEAFKSDQNHDQAYVQQWADQVKAIITRLQPSLRPEITLESFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + + + ++L+ + + S S L Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAALLNSAEYARLLKNSKSWFSLLEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R++L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRNMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|114704720|ref|ZP_01437628.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506] gi|114539505|gb|EAU42625.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506] Length = 812 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 490/802 (61%), Positives = 613/802 (76%), Gaps = 6/802 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+AD +TV Sbjct: 12 SAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADHVTV 71 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN DGSC+VSDNGRGIPT +H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVS Sbjct: 72 TLNADGSCSVSDNGRGIPTGIHSGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 131 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS WLKL+I+++G I+EM+F +G+ D PL V G AG TGTE+TF+PS D F V Sbjct: 132 VVNALSVWLKLKIRQKGKIFEMAFTHGVADGPLAVVGDAGEVTGTEITFMPSHDTFRGVT 191 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+Y TL+HRLREL+FLNS V+I L DKR + + I +FY+GG+EAFV Y+DR KKPL+ Sbjct: 192 AFDYSTLEHRLRELAFLNSGVRIILTDKRPADEKRIELFYEGGLEAFVRYVDRAKKPLIS 251 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +PI + G +D I++++AM WND Y+ENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Y E Sbjct: 252 TPISLTGEKDGITVEVAMWWNDAYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVGGYAE 311 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 S KK+K ++ GDDCREG + +LS+K+PDP+FSSQTK+KLVSSEVR VVE+ VN GLS Sbjct: 312 ASGLLKKEKVTLTGDDCREGLSCILSVKVPDPKFSSQTKDKLVSSEVRPVVENLVNQGLS 371 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 W EE+P EAKI++ KV++A+ RDAARRAR+LTRRKG LDI SLPGKLADC ERDP KS Sbjct: 372 EWFEENPQEAKIVISKVVEAAAARDAARRARELTRRKGALDITSLPGKLADCQERDPAKS 431 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD+ML S +IGTLITALGT I Sbjct: 432 EIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFDRMLGSDQIGTLITALGTSI 491 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D F+ +KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP LI G ++I +PPLY +T Sbjct: 492 GKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHVFIAQPPLYKVT 551 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 RGK QY+KDE++LE+YLI L + S V + DLR +DDAL + ++ + Sbjct: 552 RGKQSQYLKDEKALENYLIEGGLDDASL-TLASGEVRAGRDLRTAVDDALAVRNVLSGLH 610 Query: 606 PNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +D++ +EQA I G + E + A ++A RL+ IAE++E+ W G Sbjct: 611 SRYDRSVVEQATILGALSPEVADHPQDGPETAKRIAARLDLIAEETERGWTGEAVAGGYR 670 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY-LTILSLICNGDKIKITGPCSL 722 R RGV E ++ + + S + ++ R+ E Y + +L I GP L Sbjct: 671 FMRTVRGVTEVQTIDAALLQSGDALALMRYAPRLREVYDGGVPTLARKDTVRDIAGPLQL 730 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L T+F +GRKGI+ QRYKGLGEMN+ QLWETTL+PD R+L+RVK+ DA+ AD+LF++LMG Sbjct: 731 LITVFEVGRKGITTQRYKGLGEMNSDQLWETTLDPDARTLVRVKVQDATDADNLFAQLMG 790 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 DEV PRREFIQ+N+L LDI Sbjct: 791 DEVAPRREFIQDNALTVANLDI 812 >gi|83652312|gb|ABC36375.1| DNA gyrase, B subunit [Burkholderia thailandensis E264] Length = 867 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 46 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 105 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 106 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 165 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 166 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 225 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ S IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 226 IGDTE-NRGTEVHFMADSTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 282 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNIP Sbjct: 283 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 342 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 343 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 402 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 403 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 462 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 463 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 522 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 523 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 582 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 583 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 642 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 643 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 701 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 702 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 761 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ + + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 762 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 821 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 822 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 867 >gi|71281227|ref|YP_266786.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H] gi|71146967|gb|AAZ27440.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H] Length = 814 Score = 903 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 401/815 (49%), Positives = 541/815 (66%), Gaps = 18/815 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y + SI++LKGLDAV+KRP MYIGDTD +GLHHM++EVLDN+IDE+L G+ I Sbjct: 2 TVENEYSSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVLDNSIDEALAGHCTDI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGLHG 122 VT+++DGS +V D+GRGIPT++H EEGISAAEVIMT LHAGGKF YKVSGGLHG Sbjct: 62 IVTIHLDGSVSVQDDGRGIPTEIHPEEGISAAEVIMTVLHAGGKFGGEDSGYKVSGGLHG 121 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS LKL I+R+G ++E + G+ + PL G + TGTEV F PS++ F Sbjct: 122 VGISVVNALSEKLKLNIRRDGKLFEQFYHIGVAEAPLAEVG-VSDKTGTEVRFWPSTNTF 180 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + F+Y+ L R+RELSFLNS V I LID+R E +E Y GGI+AFV YL+ +K P Sbjct: 181 TDVLFHYEILVKRIRELSFLNSGVSIRLIDER-EEGKEDHFHYDGGIQAFVDYLNTNKTP 239 Query: 243 LMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHLSG R+ALTR + Sbjct: 240 VNEEIFYFDLEREDGIAVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLSGFRTALTRTLN 299 Query: 302 SYVEKSFGSKKDK-----RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 SY+ K +K K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV++ V Sbjct: 300 SYMTKEGLNKTKKGGATETSATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKTAV 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + + L +L E+P A+ I+ K++DA+ R+AAR+AR++TRRKGVLDIA LPGKLAD Sbjct: 360 EQAMGEKLGEYLLENPSIARTIIMKIVDAARAREAARKAREMTRRKGVLDIAGLPGKLAD 419 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKM+SSQE+GT Sbjct: 420 CQEKDPALSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMISSQEVGT 479 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG GIG+D ++ KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G ++I Sbjct: 480 LITALGCGIGRDEYNPEKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIMERGHIFI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +GK +Y+KD++ L +YL +L + I+ L ++ Sbjct: 540 AQPPLYKVKKGKQERYIKDDDGLTEYLTTLALDNASIHVNEDAPAITGAALEQLVNQFRN 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRL-----NFIAEKS 649 +IK +E+ V S + + + + A L +L N K Sbjct: 600 TMDIIKRLSRQIPADILEKMVYSSTISADDFADEAKVNAWAKNLITQLENQDGNGSIYKI 659 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E ++ N G+ +++ I S + I + + Sbjct: 660 EVKYNQERNIYFPNFIVRKHGIDKEYHCSYEFIQSKEFASIMALNTSINDLMEEGAYVKR 719 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 L+ + + ++G +QRYKGLGEMN QLWETT++P+TR +L+V I D Sbjct: 720 GDKVNPAANFEDALEWLMAESKRGQYIQRYKGLGEMNPEQLWETTMDPETRRMLQVTIED 779 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A AD LF+ LMGD VEPRR+FI++N+L LDI Sbjct: 780 AIAADQLFTTLMGDHVEPRRKFIEDNALKVSNLDI 814 >gi|85705680|ref|ZP_01036777.1| DNA gyrase subunit B [Roseovarius sp. 217] gi|85669670|gb|EAQ24534.1| DNA gyrase subunit B [Roseovarius sp. 217] Length = 775 Score = 903 bits (2335), Expect = 0.0, Method: Composition-based stats. Identities = 436/775 (56%), Positives = 551/775 (71%), Gaps = 3/775 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM+YEV+DN IDE+L G+AD + VT++ D S +VSDNGRGIP D+H+ Sbjct: 1 MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVTIHADSSVSVSDNGRGIPVDMHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVVNALS WL+LRI R G + Sbjct: 61 GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSEWLELRIWRNGKEHYAR 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G L V G A GTEV FL S + FS D+ ++TL+ RLREL+FLNS V+I Sbjct: 121 FEGGFTVESLRVVGDANGRKGTEVRFLASLETFSNLDYIFETLEKRLRELAFLNSGVRII 180 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R EP +FY+GG++ FV YLDRHK P M PI I G RD+I +++AM WND Y Sbjct: 181 LRDERPTEPLMSELFYEGGVKEFVKYLDRHKSPAMPEPIFITGERDDIGVEVAMWWNDSY 240 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 HE VL FTNNIPQ+DGGTH++G R ALTR I +Y + + +KK+K + GDD REG T V Sbjct: 241 HETVLPFTNNIPQRDGGTHMAGFRGALTRTINNYAQTTGIAKKEKVTFTGDDAREGLTCV 300 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEVR VE VN+ L+ W EE+P A+IIV K+++A+ R Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVNEKLAEWFEENPQIARIIVSKIIEAAHAR 360 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AAR+ARDLTRRK +D+ L GKL DCS +DP K+ELFLVEGDSAGGSA+ GR R QA Sbjct: 361 EAARKARDLTRRKNPMDVNFLAGKLKDCSSKDPSKTELFLVEGDSAGGSAQTGRDRGTQA 420 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 +LPLRGKILNVERARFD+ML SQEIG L+ ALGTGIG+D FDI KLRYHKI+IMTDADVD Sbjct: 421 VLPLRGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFDIKKLRYHKIVIMTDADVD 480 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 GAHIRTLLLTFF+RQMP LI G+LYI +PPLY + RGKS Y+KD+ LEDYLI Q + Sbjct: 481 GAHIRTLLLTFFYRQMPELIEGGYLYIAQPPLYKVMRGKSEVYLKDQAGLEDYLIAQGTT 540 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + + I+ DL +++A + ++++ F ++ + +EQA I+ F Sbjct: 541 DAGLRLGTGEE-IAGPDLVRVVEEARQAKRILEAFPTHYPRHILEQAAIAEAFLAGRVDS 599 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 +A +A RL+ I+ + E+ W G ++ I + R RGV+E L+G + ++ Sbjct: 600 DLQGVADTVAQRLDMISNEYERGWQGRPTQDNGIRLTRTVRGVEEMRTLDGPVLRGGEAR 659 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + E Y +LI I GP LLD I G KG+S+QRYKGLGEMN Sbjct: 660 KLSQMTTPLREIYRERATLIRKDRVQPIFGPLDLLDAILKEGEKGLSLQRYKGLGEMNPG 719 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 QLWETTL+P+ R+LL+VKI D ++ADDLF++LMGD VEPRREFIQEN+L LD Sbjct: 720 QLWETTLDPEARTLLQVKIDDVAEADDLFTKLMGDVVEPRREFIQENALNVANLD 774 >gi|92115637|ref|YP_575366.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14] gi|91798531|gb|ABE60906.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14] Length = 813 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 459/805 (57%), Positives = 594/805 (73%), Gaps = 6/805 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 12 TEPAAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 72 TRVEVILNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLH 131 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L LRI R+ + + F +G PL V G A GTEVTFL S + Sbjct: 132 GVGVSVVNALSSKLILRIWRKDKEHLIEFAHGDAVAPLKVVGEANGKRGTEVTFLASRET 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ ++++ TL+HRLREL+FLNS V I L D R + M Y GG+ FV YLDR+KK Sbjct: 192 FTNVEYDFATLEHRLRELAFLNSGVNILLSDLRRAVEKREQMMYDGGVVEFVKYLDRNKK 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 ++ PI I+ + + ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 252 AMVPEPIMIRADMNGLGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + ++K++ ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N Sbjct: 312 GYAD--AMARKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVIN 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+AW EEHP EAK+IV KV++A+ R+AAR+AR+LTRRKG LD+ASLPGKLADC ERD Sbjct: 370 EALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPGKLADCQERD 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVERARFDKMLSS++IGTLITAL Sbjct: 430 PAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSEQIGTLITAL 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD++KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP+LI G LYI +PPL Sbjct: 490 GTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPTLIEAGHLYIAQPPL 549 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +TRGKS QY+KDE +LEDYLI L + + S DL+ ++DA I ++ Sbjct: 550 YKVTRGKSEQYLKDERALEDYLIETGLD-DCVFKLATGEDRSGRDLQALVEDARVIRNVL 608 Query: 602 KDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + ++++ IEQA I+GV N +D + A +A R++ +A++ E+ W G Sbjct: 609 HNMHGRYNRSVIEQAAIAGVLNPRVTADVATANAAADYIARRMDALADEVERGWIGRFTE 668 Query: 660 SD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + +R RGV++ +++ + + S ++ ++ +++E Y L + I G Sbjct: 669 GEGFSFERTVRGVKDIAMIDDALLGSADARKLDEYAAKLQEAYPRPGLLRRKDTETPIHG 728 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P L + + GRKG+++QRYKGLGEMN QLWETTL+ RSLL+VKI + +ADD+F+ Sbjct: 729 PVGLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDASERSLLQVKIKEVDEADDIFT 788 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 +LMGD VEPRREFIQENSL + +D+ Sbjct: 789 KLMGDVVEPRREFIQENSLSANVDV 813 >gi|188474269|gb|ACD49734.1| DNA gyrase subunit B [Vibrio alginolyticus] Length = 778 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 387/778 (49%), Positives = 525/778 (67%), Gaps = 10/778 (1%) Query: 22 DAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGR 81 DAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +VSD+GR Sbjct: 1 DAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGR 60 Query: 82 GIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKR 141 GIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS ++L I R Sbjct: 61 GIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIHR 120 Query: 142 EGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSF 201 G+I+ ++ +G PL V G + TGT++ F PS++ FS +F+YD L RLRELSF Sbjct: 121 GGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSF 179 Query: 202 LNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISID 260 LNS V I L+D+R + Y+GGI+AFV +L+ +K P+++ R++ IS++ Sbjct: 180 LNSGVSIKLVDEREADKH-DHFMYEGGIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVE 238 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 +AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR + S+++K SKK K + GD Sbjct: 239 VAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGD 298 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++ Sbjct: 299 DAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCS 358 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAK Sbjct: 359 KIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAK 418 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500 QGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH I Sbjct: 419 QGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNI 478 Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLE 560 IIMTDADVDG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDEE++ Sbjct: 479 IIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKGKQEQYIKDEEAMN 538 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 Y ++ +L ++ L + KL + + + + + + Sbjct: 539 QYQVSLALDNASLHVNAEAPALAGEALEKLVQQYNAGIKLAERMSRRYPSALVNELIYTP 598 Query: 621 VFNCE--SDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQE 673 E D + + +L +LN E H + + + GV Sbjct: 599 RLTPEQCHDASVVEAWTKQLVEQLNAKEVGASQYSYEVEQHEELGLNLPKIVVRTHGVTH 658 Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733 + + + S S ++ + + + LD + +G Sbjct: 659 EHAISIDFLNSKEYGKLADLSEALDGLLEEGAYIKRGERTMPVANFAEALDWLVKESMRG 718 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 +S QRYKGLGEMN QLWETT++P+TR +++V I DA AD LF+ LMGD+VEPRR F Sbjct: 719 LSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADQLFTTLMGDQVEPRRNF 776 >gi|167834927|ref|ZP_02461810.1| DNA gyrase subunit B [Burkholderia thailandensis MSMB43] Length = 822 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 386/826 (46%), Positives = 538/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIRVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRMLEELDGEQVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 IGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDAELNAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 598 ISGDALGELARSYLLAQGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ ++ + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 GLIGAGAAIKRGERGSNVSDFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822 >gi|3550425|gb|AAC34893.1| DNA gyrase B subunit [Methylovorus sp. SS1] Length = 799 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 390/801 (48%), Positives = 537/801 (67%), Gaps = 8/801 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YD+ SI+IL+GLDAV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ D I V Sbjct: 2 TDYDSSSIKILEGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGHCDDIKVI 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ++ D S ++SDNGRGIPTD+ +++ SAAE++MT LHAGGKF+Q SYKVSGGLHGV Sbjct: 62 IHPDNSVSISDNGRGIPTDIKQDDIKAVKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WL+L+I R G +++M F G P+ VTG GTEV FL S++ F Sbjct: 122 GVSVVNALSDWLRLKIYRNGQVHQMEFRRGEAVRPVAVTG-TTERKGTEVHFLASTETFG 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +F+++ L R+RELSFLN+ V+I LID+R+ + + GG+ FV Y++R K L Sbjct: 181 VVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS--ENFAHSGGVRGFVEYMNRSKTVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P G +D ++I+++M+WND Y E V CFTNNIPQ+DGGTHL+GLR+A+TR + +Y Sbjct: 239 HPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNNIPQRDGGTHLTGLRTAMTRTLNNY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E++ +KK K GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV+ V Sbjct: 299 IEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQEVVAAK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L E+P++AK+I K++DA+ RDAAR+AR++TRRKG +D LPGKLADC ERDP Sbjct: 359 LAEFLLENPVDAKVICNKIIDAARARDAARKAREMTRRKGAMDTMGLPGKLADCQERDPT 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+LSSQEI TLITA+GT Sbjct: 419 KCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKLLSSQEIATLITAMGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D F + +RYH+IIIMTDADVDGAHIRTLLLTFF+RQM L+ G +YI +PPLY Sbjct: 479 GIGKDDFSADNVRYHRIIIMTDADVDGAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK +Y+KD++ L+ YL+ SL L + ++ L + + +I+ Sbjct: 539 VKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGGETLAGEQLAEIAKQMVLTEAVIRR 598 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +D++ + + ++A +L L + + + Sbjct: 599 LRSLYDESVLRALQNVEGTVELDTEAKANAVAEQLRPLLGHTGSEVIVAQDLEAGTYRLE 658 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V + G + V++ + S + S ++ S+ ++ + L Sbjct: 659 VNKYVHGNLQSCVIDTDFLASGDYRQISKMSVMLQGLLGEGASIKRGEKSQPVSNFKAAL 718 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + + +++QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F+ LMGD Sbjct: 719 DWLLDEAKHNLNIQRYKGLGEMNPEQLWETTMDPTVRRLLKVQIDDAIAADEIFTTLMGD 778 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR FI+ N+L LD+ Sbjct: 779 QVEPRRAFIEGNALGVNNLDV 799 >gi|167582968|ref|ZP_02375842.1| DNA gyrase subunit B [Burkholderia thailandensis TXDOH] Length = 822 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 387/826 (46%), Positives = 539/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 181 IGDTE-NRGTEVHFMADQTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ + + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822 >gi|304394414|ref|ZP_07376337.1| DNA gyrase, B subunit [Ahrensia sp. R2A130] gi|303293854|gb|EFL88231.1| DNA gyrase, B subunit [Ahrensia sp. R2A130] Length = 858 Score = 902 bits (2332), Expect = 0.0, Method: Composition-based stats. Identities = 480/806 (59%), Positives = 602/806 (74%), Gaps = 10/806 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN IDE L G+AD + Sbjct: 53 NSEEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEVLAGHADAVN 112 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N DGS TV+DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGV Sbjct: 113 VTINNDGSVTVTDNGRGIPVDMHEEEGMSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGV 172 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184 SVVNALS LKLRI R +E+SF +G+ D PL + G A +GTE+TF+PSS+ F+ Sbjct: 173 SVVNALSVSLKLRIARNDKWHEISFTHGVSDGPLEIVGDAEAGYSGTELTFMPSSETFTN 232 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++D L+HRLREL+FLNS +I L D R ++ ++Y+GG++ FV YLDR K L+ Sbjct: 233 IKFDFDRLEHRLRELAFLNSGCRIILSDDRGGADKQTELYYEGGLKEFVRYLDRAKGALI 292 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 ++PI ++ RD I+++LA+ WND Y+ENVLCFTNNIPQ+DGGTHL+G R ALTRQ+T Y Sbjct: 293 EAPIYLKSERDGITVELALWWNDSYNENVLCFTNNIPQRDGGTHLAGFRGALTRQVTGYA 352 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + KK+K S+ GDDCREG T VLS+K+PDP+FSSQTK+KLVSSEVR VVE VN+ L Sbjct: 353 DAQGIIKKEKVSLTGDDCREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEGLVNETL 412 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 W EE+P +AK +V KV++A+ R+AAR+AR+LTRRKGVLDIASLPGKLADC E+DP Sbjct: 413 KEWFEENPADAKTVVSKVVEAATAREAARKARELTRRKGVLDIASLPGKLADCQEKDPAL 472 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+F+VEGDSAGGSAKQGRSR+NQAILPLRGK+LNVERARFDKMLSS++IGTLITALGTG Sbjct: 473 SEIFIVEGDSAGGSAKQGRSRKNQAILPLRGKVLNVERARFDKMLSSEQIGTLITALGTG 532 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D F+++K RYHK+IIMTDADVDGAHIRTLLLTFFFRQMP LI G+LYI +PPLY I Sbjct: 533 IGPDEFNLDKARYHKVIIMTDADVDGAHIRTLLLTFFFRQMPELIERGYLYIAQPPLYSI 592 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGKSLQY+KDEE+ E+Y I L E S V+ DLR+ +D+ALK+ +L++ Sbjct: 593 KRGKSLQYLKDEEAKENYFIENGLDEASLHLG-SGEVLVGADLRSVVDEALKMRRLLEGL 651 Query: 605 YPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661 + ++ +EQ I+G + E S Q + A RL+ +AE++EK W G D Sbjct: 652 HTRYNHGMVEQLAIAGGLDVEAMSMQSHAEQVLRDTATRLDTLAEETEKGWQGDWRKKDD 711 Query: 662 ----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + R RGV+E VL+ S ++ ++E Y L G + Sbjct: 712 GRVEFVFHRTVRGVREAHVLDAGLTGSADARAIHGKHEHLDELYAQPARLERRGMSSDVF 771 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 GP SLL+ +F G KGI++QRYKGLGEMNA QLWETTL+PD RSLL+VK+T+AS ADDLF Sbjct: 772 GPRSLLEAVFKAGEKGITLQRYKGLGEMNAEQLWETTLDPDARSLLQVKVTEASDADDLF 831 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALD 802 +RLMG+EVEPRR FIQ+N+L LD Sbjct: 832 TRLMGEEVEPRRNFIQDNALSVANLD 857 >gi|262377662|ref|ZP_06070882.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145] gi|262307421|gb|EEY88564.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145] Length = 823 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 406/815 (49%), Positives = 538/815 (66%), Gaps = 17/815 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 11 TEQTIEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L+L I R G I+E + +G PL V G N TGT V F PS++ Sbjct: 131 GVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDT-NRTGTRVRFWPSAET 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS FN D L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FSQTIFNVDILARRLRELSFLNAGVRIVLRDERI--NAEHVFDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + I++++A++WND Y ENV CFTNNIPQKDGGTHL+G R+ALTR + Sbjct: 248 HLNDIFHFTAAQADNGITVEVALQWNDSYQENVRCFTNNIPQKDGGTHLAGFRAALTRGL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y++ KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV++ VE + Sbjct: 308 NNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVSSEVKTAVEQAM 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N S +L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+ Sbjct: 368 NKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFD+M+SS E+GTLITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMISSAEVGTLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G +YI +PP Sbjct: 488 LGCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGHIYIAQPP 547 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD ++LE YLI+ ++ E I L N I D K Sbjct: 548 LYKLKKGKQEQYIKDNDALETYLISNAIDELELHISAEAPAIRGEALANVIADYQTSQKS 607 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEIN-------------VSLASKLANRLNFIAE 647 + + + ++ + F + ++ N ++ L L Sbjct: 608 LARLTQRYPASLLDALLSLEGFKLDQLEDKNYVETWGGNLRVAIEAIQPTLRPELTLERF 667 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + E + + + + ++L+ + S S L Sbjct: 668 EKELADGQKTASWLPRITIYVHNLPHSYLLDSVLLGSSEYARLLKNSKSWFSLLEEGAYL 727 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 KI+++ + I R+G+ +QRYKGLGEMNA QLWETT++PD R++L+V + Sbjct: 728 QKGDRKIQVSNFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPDNRNMLQVTV 787 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 TDA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 TDAIEADRMFSCLMGDDVEPRRAFIEENALNADID 822 >gi|260771050|ref|ZP_05879978.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972] gi|260613939|gb|EEX39130.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972] Length = 781 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 389/783 (49%), Positives = 534/783 (68%), Gaps = 11/783 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DN+IDE+L GY I VT++ D S +VSD+GRGIPT+LH Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIIVTIHEDNSVSVSDDGRGIPTELHP 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R G ++ + Sbjct: 61 EEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGKVHTQT 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ + PL V G + +GT V F PS++ F+ +F+Y+ L RLRELSFLNS V I Sbjct: 121 YRHGVPEAPLAVVGDT-DRSGTMVRFWPSAETFTNIEFHYEILAKRLRELSFLNSGVSIK 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDG 268 L+D+R + ++ Y+GGI+AFV++L+R+K P+ + R++ IS+++AM+WNDG Sbjct: 180 LVDER-EDNKQDHFMYEGGIQAFVNHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDG 238 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 + E++ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K SKK K + GDD REG T+ Sbjct: 239 FQESIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKTATSGDDAREGLTA 298 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+PDP+FSSQTK+KLVSSEV+S VES + + L+ +L E+P EAKI+ K++DA+ Sbjct: 299 VVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNDFLAENPSEAKIVCSKIIDAARA 358 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQ Sbjct: 359 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 418 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV Sbjct: 419 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 478 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDEE++ Y I ++ Sbjct: 479 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEEAMNQYQIALAM 538 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--S 626 ++ L + KLI+ + + I + + E Sbjct: 539 DNAELHVNADAPALAGAPLEKLVQQYNAAIKLIERMSRRYPHSLIHEFIYMPRMTAEKCQ 598 Query: 627 DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSS 681 D+ + +L ++LN + + + N +K GV +++L Sbjct: 599 DEAGAQAWTQQLIDQLNAKEVGASQYSFTLEHNAEHNVYSPRIKVRTHGVTHEYLLSVDL 658 Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + S S + + + + LD + R+G+S+QRYKG Sbjct: 659 LNSKEYGKLAELSEAMHGLIEDGAYIKRGERTQPVASFAAALDWLIKESRRGLSVQRYKG 718 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P+TR +++V I DA AD+LF+ LMGD+VEPRR FI+ N+L Sbjct: 719 LGEMNPDQLWETTMDPETRRMMQVTIDDAVGADELFTTLMGDQVEPRRAFIENNALKVAN 778 Query: 801 LDI 803 LD+ Sbjct: 779 LDV 781 >gi|161723181|ref|YP_443735.2| DNA gyrase subunit B [Burkholderia thailandensis E264] gi|167620901|ref|ZP_02389532.1| DNA gyrase subunit B [Burkholderia thailandensis Bt4] Length = 822 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ S IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 181 IGDTE-NRGTEVHFMADSTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ + + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 GLIGAGAAIKRGERSSNVADFKEAMKWLMADAERNMSKQRYKGLGEMNPEQLWETTMDPA 776 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822 >gi|114568568|ref|YP_755248.1| DNA gyrase subunit B [Maricaulis maris MCS10] gi|114339030|gb|ABI64310.1| DNA gyrase subunit B [Maricaulis maris MCS10] Length = 800 Score = 902 bits (2331), Expect = 0.0, Method: Composition-based stats. Identities = 447/805 (55%), Positives = 576/805 (71%), Gaps = 9/805 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+ Sbjct: 1 MTEQ-ANQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + VTL+ DGS +V D+GRGIPTD+H+EEG+SAA+VIMT+LHAGGKF+Q SYKVSGGL Sbjct: 60 CSEVLVTLHADGSASVRDDGRGIPTDIHQEEGVSAAQVIMTQLHAGGKFDQNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS W+ L I R G + M F G + L V G A GTEV F+PS Sbjct: 120 HGVGVSVVNALSDWMDLTIWRNGKRHWMRFRRGDAEEDLKVMGDAEPGQKGTEVRFMPSE 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + F++ +FN +TLQHRLREL+FLNS V+I+L D+R E TM Y GG+ AFV++LDR+ Sbjct: 180 ETFTMTEFNRETLQHRLRELAFLNSGVKITLRDEREAELYSDTMVYDGGVAAFVAHLDRN 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ P+ I G +D ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR Sbjct: 240 KTPIFTPPVLITGEKDGVAVEAALEWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRI 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y S + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE Sbjct: 300 INTYAASSGLASKAKVSISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGA 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ W EEHP EAK++V K+++A+ R+AAR+AR+LTRRK L+I+SLPGKLADC E Sbjct: 360 VGEALAEWFEEHPTEAKMVVGKIIEAAAAREAARKARELTRRKSALEISSLPGKLADCQE 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFD+ML S+++GTLIT Sbjct: 420 KDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDRMLGSEQVGTLIT 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D + KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP LI G+LYI +P Sbjct: 480 ALGTGIGRDQINYEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIEKGYLYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +G+S +YVKD+ ++ YLI + +SE V++ DL + + A ++ Sbjct: 540 PLYKIAKGRSERYVKDQAEMDAYLIEEGVSEAHLTLH-GGEVVTGQDLASRVAAARQVKL 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-- 657 I +E A ++G E + A+ RLN A++ E +W G + Sbjct: 599 SIDRMTARAPGFALEAAAMAGALVPEPSEAAVTRAAA----RLNSFADEGEDNWGGRVDG 654 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + ++ +R RGV E VL+ S S +K + I ++Y S + + I Sbjct: 655 EDGGLVFEREVRGVMETVVLDRSLRASPDAKRLNERATAISDDYAGPASFVPKSGPVTIN 714 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 P L+D + G KG+ +QRYKGLGEMN QLWETTL+P+ RSLL+V +T A AD+LF Sbjct: 715 SPRELVDAVVVSGAKGMKIQRYKGLGEMNPGQLWETTLDPNARSLLQVSVTHADTADELF 774 Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802 S+LMGD VEPRR+FIQE++L + +D Sbjct: 775 SKLMGDVVEPRRDFIQEHALEAEVD 799 >gi|13474326|ref|NP_105894.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099] gi|14025078|dbj|BAB51680.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099] Length = 823 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 493/825 (59%), Positives = 616/825 (74%), Gaps = 24/825 (2%) Query: 1 MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MSD I+N++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSDQIENTNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167 VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G D PL TGS Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLRATGSYEQDKQPGTYE 180 Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 +G+ +TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R + + Y Sbjct: 181 GRSGSSITFFPSAETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDGRHADIVRHELHYD 240 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GG+E FV YLDR KKPL++ PI I+ RD I++++AM WND YHENVL FTNNIPQ+DGG Sbjct: 241 GGLEEFVKYLDRVKKPLIEKPIAIKAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 THL+G R ALTRQIT Y E S +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K Sbjct: 301 THLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 LVSSEVR VVE VN+ L WLEEHP E K+++ KV+ A+ R+AAR+ARD+T RK L Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPTEGKVVIDKVIQAAAAREAARKARDIT-RKSSLG 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +ML S IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G LYI +PPLY +TRGKS QY+K+E + E++LI L E S V + D Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKNESAFEEFLIESGLEEASL-TLGSGEVRTGQD 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644 LR +DDAL + +LI + +++ +EQA I+G N E ++ ++A ++A RL+ Sbjct: 599 LRGAVDDALAVRQLINGLHTRYNRGVVEQASIAGGLNPEVFSDLGRANAMAERIAQRLDI 658 Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 IAE +E+ W G + + + +R R V+E L+ I S ++ ++ R+ E Sbjct: 659 IAEDTERGWTGRMSTSNDGSGGYVFERTVRSVKEYAHLDMGLINSADARQLDRYAQRLSE 718 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 Y T L ++GP +LL+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ Sbjct: 719 VYGTPPVLRRKDVSETVSGPLALLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L LDI Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823 >gi|53717712|ref|YP_106698.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243] gi|53724903|ref|YP_101864.1| DNA gyrase subunit B [Burkholderia mallei ATCC 23344] gi|67642369|ref|ZP_00441126.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4] gi|76808573|ref|YP_331715.1| DNA gyrase subunit B [Burkholderia pseudomallei 1710b] gi|121600538|ref|YP_994144.1| DNA gyrase subunit B [Burkholderia mallei SAVP1] gi|124384090|ref|YP_001028199.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10229] gi|126439588|ref|YP_001057142.1| DNA gyrase subunit B [Burkholderia pseudomallei 668] gi|126451013|ref|YP_001079586.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10247] gi|126452573|ref|YP_001064386.1| DNA gyrase subunit B [Burkholderia pseudomallei 1106a] gi|134281651|ref|ZP_01768359.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305] gi|167001182|ref|ZP_02266981.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20] gi|167717460|ref|ZP_02400696.1| DNA gyrase subunit B [Burkholderia pseudomallei DM98] gi|167736495|ref|ZP_02409269.1| DNA gyrase subunit B [Burkholderia pseudomallei 14] gi|167813573|ref|ZP_02445253.1| DNA gyrase subunit B [Burkholderia pseudomallei 91] gi|167843719|ref|ZP_02469227.1| DNA gyrase subunit B [Burkholderia pseudomallei B7210] gi|167892198|ref|ZP_02479600.1| DNA gyrase subunit B [Burkholderia pseudomallei 7894] gi|167900710|ref|ZP_02487915.1| DNA gyrase subunit B [Burkholderia pseudomallei NCTC 13177] gi|167908927|ref|ZP_02496018.1| DNA gyrase subunit B [Burkholderia pseudomallei 112] gi|167916968|ref|ZP_02504059.1| DNA gyrase subunit B [Burkholderia pseudomallei BCC215] gi|217424084|ref|ZP_03455584.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576] gi|237814478|ref|YP_002898929.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346] gi|242315971|ref|ZP_04814987.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b] gi|254174704|ref|ZP_04881365.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399] gi|254184146|ref|ZP_04890737.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655] gi|254186617|ref|ZP_04893134.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194736|ref|ZP_04901167.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13] gi|254201969|ref|ZP_04908333.1| DNA gyrase, B subunit [Burkholderia mallei FMH] gi|254207301|ref|ZP_04913652.1| DNA gyrase, B subunit [Burkholderia mallei JHU] gi|254262120|ref|ZP_04953174.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a] gi|254298588|ref|ZP_04966039.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e] gi|254359610|ref|ZP_04975881.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280] gi|52208126|emb|CAH34056.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243] gi|52428326|gb|AAU48919.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 23344] gi|76578026|gb|ABA47501.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710b] gi|121229348|gb|ABM51866.1| DNA gyrase, B subunit [Burkholderia mallei SAVP1] gi|124292110|gb|ABN01379.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10229] gi|126219081|gb|ABN82587.1| DNA gyrase, B subunit [Burkholderia pseudomallei 668] gi|126226215|gb|ABN89755.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106a] gi|126243883|gb|ABO06976.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10247] gi|134247318|gb|EBA47404.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305] gi|147747863|gb|EDK54939.1| DNA gyrase, B subunit [Burkholderia mallei FMH] gi|147752843|gb|EDK59909.1| DNA gyrase, B subunit [Burkholderia mallei JHU] gi|148028824|gb|EDK86756.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280] gi|157808695|gb|EDO85865.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e] gi|157934302|gb|EDO89972.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237] gi|160695749|gb|EDP85719.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399] gi|169651486|gb|EDS84179.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13] gi|184214678|gb|EDU11721.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655] gi|217393147|gb|EEC33169.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576] gi|237505877|gb|ACQ98195.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346] gi|238523508|gb|EEP86946.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4] gi|242139210|gb|EES25612.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b] gi|243063009|gb|EES45195.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20] gi|254220809|gb|EET10193.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a] Length = 822 Score = 902 bits (2330), Expect = 0.0, Method: Composition-based stats. Identities = 388/826 (46%), Positives = 540/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 IGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D++ +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ +T + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 GLIGAGAAIKRGERSSNVTDFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPA 776 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822 >gi|126668219|ref|ZP_01739180.1| DNA gyrase subunit B [Marinobacter sp. ELB17] gi|126627368|gb|EAZ98004.1| DNA gyrase subunit B [Marinobacter sp. ELB17] Length = 804 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 394/807 (48%), Positives = 528/807 (65%), Gaps = 11/807 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y++ SI++LKGLDAV+KRP MYIGDTD +GLHHM++E++DN+IDE+L G+ I Sbjct: 1 MSESAYNSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFELVDNSIDEALAGHCTEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + ++ D S +V DNGRGIP DLH+ EGISAAEVIMT LHAGGKF+ +YKVSGGLHGVG Sbjct: 61 GIRIHPDESVSVHDNGRGIPVDLHEGEGISAAEVIMTVLHAGGKFDDNTYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS L L I+R G +YE ++ +G+ PL GS + +GT+V F+PS F+ Sbjct: 121 VSVVNALSSVLTLTIRRSGKVYEQTYNHGVPAAPLHEVGST-DASGTKVHFIPSEATFTN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ L R+REL+FLNS V+I L D+RS + Y+GG+ AFV +L+ +K P+ Sbjct: 180 IKFHYEILAKRVRELAFLNSGVRIRLTDERSGKE--ELFEYEGGLRAFVEHLNTNKTPIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + Q D I +++AM+WND + EN+ CFTNNIPQ+DGGTHL G R+ALTR + SY+ Sbjct: 238 RVFYFTQQREDGIEVEVAMQWNDAFQENIYCFTNNIPQRDGGTHLVGFRTALTRSLNSYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E KK K S GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 298 EHEGLGKKAKVSTSGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +A+L+E P EA++IV K+++A+ R+AAR+ARD+TRRKG LDIA LPGKLADC E+DP Sbjct: 358 AAYLQEQPSEARLIVNKMIEAARAREAARKARDMTRRKGALDIAGLPGKLADCQEKDPAL 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKMLSS E+G LITALG G Sbjct: 418 SELFIVEGDSAGGSAKQGRERRNQAILPLKGKILNVEKARFDKMLSSAEVGNLITALGCG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F++ KLRYH IIIMTDADVDG+HIRTLLLTF FRQM +I G ++I PPLY + Sbjct: 478 IGREEFNVEKLRYHSIIIMTDADVDGSHIRTLLLTFLFRQMREVIERGHVFIAMPPLYKV 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGK QY+KDE + E YL +L I + L + D + +I Sbjct: 538 KRGKQEQYLKDENARESYLTQTALEGAQLFVNADAPAIKDSALETMVKDYQAVMAMIDRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEK-----SWHGSI 657 + + Q + + E D+ S +L N L K Sbjct: 598 SRAYPSKVLAQMLHNNTLTSEQLKDESAVASWVGRLGNNLELDTRTGTKYVFSVHHDTER 657 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + +V G+ + V + + K ++ + K + Sbjct: 658 DLYLPMVTVHLHGMAHEHVFSHTFFEAPSYKAIARLGETLDALVEEGAYVQRGERKQAVL 717 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + ++G+++QRYKGLGEMN QLWETT++P++R +++V I DA AD +F Sbjct: 718 SFEGALAWLMKEAQRGLTLQRYKGLGEMNPEQLWETTMDPESRRMMKVTIADAFAADQMF 777 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR FIQ ++L LDI Sbjct: 778 TTLMGDDVEPRRNFIQTHALEVTNLDI 804 >gi|167822114|ref|ZP_02453585.1| DNA gyrase subunit B [Burkholderia pseudomallei 9] gi|226193304|ref|ZP_03788914.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9] gi|225934904|gb|EEH30881.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9] Length = 822 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 388/826 (46%), Positives = 541/826 (65%), Gaps = 27/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLIVRRDGKKHFMEFHRGIAQNRVLEERDGEQVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 IGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D++ +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFAGGVKGFVEYINKTKSVLHPTIFHINGEKDSVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I +G++YI +PPLY + G+ +Y+KD+ L +++ +L + ++ Sbjct: 538 YRQMPEMIEHGYVYIAQPPLYKVKAGRDERYLKDDTELNAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L +++ +D +E + + S + + A LA Sbjct: 598 ISGDALGELARSYLLARGVVERLSRLYDPAALEAVMDGVAIDL-SSEASTEASAKALAAM 656 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L+ ++ + ++ + V+R G V++ + + +N + Sbjct: 657 LSDDSKTEVRVVPAYDAVREQRSLRVERTHHGNVRVSVIDEEFQHTADYQQLVNTANTFK 716 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 ++ +T + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 GLIGAGAAIKRGERSSNVTDFKEAMKWLMADAERNLSKQRYKGLGEMNPEQLWETTMDPA 776 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 822 >gi|302381122|ref|YP_003816945.1| DNA gyrase subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302191750|gb|ADK99321.1| DNA gyrase, B subunit [Brevundimonas subvibrioides ATCC 15264] Length = 815 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 460/809 (56%), Positives = 580/809 (71%), Gaps = 11/809 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +DN + ++Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 11 ADNAEEAAYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHA 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D++ V LN DGS TV+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF+Q SYKVSGGLH Sbjct: 71 DLVEVILNADGSVTVTDNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------TGTEVTF 175 GVGVSVVNALS WLKL I R G +EM F G L VTG A +GT+VTF Sbjct: 131 GVGVSVVNALSDWLKLVIFRNGQRHEMKFERGDTVESLRVTGEAPMRENGKVLSGTQVTF 190 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS F+ DF+ TL+HRLREL+FLNS V I L D R EP E + Y+GG+EAFV + Sbjct: 191 YPSVTTFAHIDFDLKTLEHRLRELAFLNSGVVIKLQDHRGVEPFEEILHYEGGVEAFVRH 250 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD+ K P+++ I I+G RDNI IDLA+ WND YHE +LCFTNNIPQ+DGGTHLS R++ Sbjct: 251 LDKSKTPILKDVIVIRGKRDNIEIDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRTS 310 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT+ + +Y+E S KK+K + G+D REG T VLS+K+PDP+FSSQTK+KLVSSEVR Sbjct: 311 LTKVMGAYMESSGALKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 370 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE DGL+ W EEHP+EAK +V K+++A+ R+AAR+ARDLTRRK LDI+SLPGKLA Sbjct: 371 VEGLCTDGLNQWFEEHPVEAKAVVAKIIEAASAREAARKARDLTRRKSALDISSLPGKLA 430 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS+ IG Sbjct: 431 DCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSELIG 490 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI G ++ Sbjct: 491 TLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELIERGHVF 550 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +++GK +Y+KD+ ++ YLI + S+ + +DL+ + DA Sbjct: 551 IAQPPLYKVSKGKQSRYLKDQSEMDSYLIEEGSSDAELDMAT-GERRTGHDLQALVRDAK 609 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + IEQ ++G+F E+ + S AS A RLN AE+ + W G Sbjct: 610 AFKAQVDRLSQRAPAFAIEQGALAGLF-AENADPVGASAAS--AERLNLYAEEGDGVWSG 666 Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 S I+ R R VQE VLE + I S + + E + + I Sbjct: 667 SPGEQGAIVFGRSRRAVQETIVLEEALIRSLDGRRLAERAAAFEGLFDAPATYRRKDRSI 726 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 I GP LL+ + G+KG+++QRYKGLGEMN QLWETTL+ + R+LLRV++ A AD Sbjct: 727 TIRGPIDLLNAVLDQGKKGLAIQRYKGLGEMNPEQLWETTLDANARTLLRVQVDHADDAD 786 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 DLF++LMGD VEPRREFIQ+N+L +A+D+ Sbjct: 787 DLFAKLMGDVVEPRREFIQDNALDAAVDV 815 >gi|258546265|ref|ZP_05706499.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826] gi|258518531|gb|EEV87390.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826] Length = 800 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 401/807 (49%), Positives = 551/807 (68%), Gaps = 11/807 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN +SYD+ I++LKGL+AV+ RP MYIG+TD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSDN---NSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIP D+H EEG SAAEVIMT LHAGGKF+ +YKVSGGL Sbjct: 58 CTEINVIIHQDESITVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L + IKR+G+I++ ++ +G PL + G + + TGTE+ FL SSD Sbjct: 118 HGVGVSVVNALSERLTMTIKRDGHIHQQTYRHGEPQAPLAIIGDS-DSTGTEINFLASSD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++YDTL RLRELSFLN+ V+I L D+RS + + Y+GG++AFV Y +R+K Sbjct: 177 TFGTVIYDYDTLAQRLRELSFLNAGVRIELRDERSDKNQI--FQYEGGVKAFVEYQNRNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ S +D +++++A++WND Y ENV CFTNNIPQ+DGGTHL+G R+A+TR + Sbjct: 235 TPIHPSIFYCAADKDGVAVEIALQWNDSYAENVYCFTNNIPQRDGGTHLAGFRAAMTRTL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ KK K + GDD REG T+++S+K+ DP+FSSQTK+KLVSSEV+S VE+ + Sbjct: 295 NAYMEEEGLLKKAKIATSGDDSREGLTAIVSVKVHDPKFSSQTKDKLVSSEVKSAVENVL 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L +L EHP EAK I K++DA+ R+AAR+AR++TRRK LDIA LPGKLADC E+ Sbjct: 355 ADKLKEYLLEHPGEAKTIAGKIVDAARAREAARKAREMTRRKDALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE+F+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML S EIGTLITA Sbjct: 415 DPAHSEIFIVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLGSAEIGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D FD KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PP Sbjct: 475 LGTGIGKDDFDAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY +T+G++ QY+KD+ L + L+ Q+L + I+K + +I+ L Sbjct: 535 LYKVTKGRNKQYLKDDHELNELLLTQALDDANLHLAADAPAITKEAFEALAREHGQIENL 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSE--KSWHGS 656 IK + +D + + + + + + +L+ AE ++ Sbjct: 595 IKRLH-RYDSRVLHALIEAPELTHATFADAHALQEWLAAYQRQLDRFAEAGIALRAEILP 653 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + I V+ Q + + S ++ F ++ + +++++ Sbjct: 654 GEVARINVRIEQHANLSQNTFDPNFADSNEYRHINTFGKKVRGLLGDGAYFQNSKERLEV 713 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +++ + + G+K +QRYKGLGEMN QLWETTL+P R +L+V++ DA AD++ Sbjct: 714 EHFHQVINALLAEGKKAYDIQRYKGLGEMNPEQLWETTLDPAVRRMLQVQLKDARLADEI 773 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 F+ LMG+EVEPRR FI++N+ + +DI Sbjct: 774 FTTLMGEEVEPRRAFIEDNANSANIDI 800 >gi|262281565|ref|ZP_06059344.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] gi|262257024|gb|EEY75763.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] Length = 822 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 400/814 (49%), Positives = 538/814 (66%), Gaps = 16/814 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +YD+ SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 11 TEQTNEKAYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHC 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT++ D S +VSDNGRGIPTD+H EEG+SAAEVI+T LHAGGKF+ SYKVSGGLH Sbjct: 71 DEIIVTIHEDESVSVSDNGRGIPTDIHPEEGVSAAEVILTILHAGGKFDDNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L L I R G ++E + +G PL V G + +GT V F PS Sbjct: 131 GVGVSVVNALSSKLHLMISRAGQVHEQEYQHGDPQYPLRVIGET-DKSGTTVRFWPSELT 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ FN + L RLRELSFLN+ V+I L D+R E Y+GG+ FV Y++ K Sbjct: 190 FTQTIFNVEILARRLRELSFLNAGVRIVLRDERI--NLEHVYDYEGGLSEFVKYINEGKT 247 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + + I +++A++WN+ Y ENV CFTNNIPQKDGG+HL+G R+ALTR + Sbjct: 248 HLNEIFHFTADTDSGIGVEVALQWNESYQENVRCFTNNIPQKDGGSHLAGFRAALTRGLN 307 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y+E KK+K +V GDD REG T+++S+K+PDP+FSSQTKEKLVSSEV+ VE +N Sbjct: 308 QYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMN 367 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 SA+L E+P AK I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+D Sbjct: 368 KEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREMTRRKSALDIAGLPGKLADCQEKD 427 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKM+SSQE+GTLITAL Sbjct: 428 PALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMISSQEVGTLITAL 487 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++ +KLRYHKIIIMTDADVDG+HIRTLLLTFFFRQMP L+ G++YI +PPL Sbjct: 488 GCGIGREEYNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELVERGYIYIAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD ++LE+YLI+ ++ E I+ L I D K + Sbjct: 548 YKLKKGKQEQYIKDNDALENYLISNAIDELSLHTNAEAPSITGEALAKVIQDYQVSQKSL 607 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFI-----------AEK 648 + + + ++ + F + + + A ++ + + + + + Sbjct: 608 QRLTLRYPASLLDALLEIEAFKSDQNHDEAYVQQWADQVKDIITRLQPSLRPEITLESFE 667 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + + + + ++L+ + S S L Sbjct: 668 RENAQGEKSAHYWPRITVYVHNLPHAYLLDAGLLNSAEYARLLKNSKSWFSLLEDGAYLQ 727 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 +I++ + I R+G+ +QRYKGLGEMNA QLWETT++P+ R +L+V I Sbjct: 728 KGDRRIQVANFHQVWQHILQDSRRGMMIQRYKGLGEMNAEQLWETTMDPENRHMLQVTID 787 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGD+VEPRR FI+EN+L + +D Sbjct: 788 DAIEADRMFSCLMGDDVEPRRAFIEENALNADID 821 >gi|218665824|ref|YP_002424518.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518037|gb|ACK78623.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 800 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 404/801 (50%), Positives = 536/801 (66%), Gaps = 8/801 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +YD+ SIQ+LKGL+AV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY D I VT Sbjct: 3 ETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTIIVT 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S ++SDNGRGIP D+H EG SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 63 IHEDESVSISDNGRGIPVDMHAGEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVGVSV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L+LRI R+G ++ + +G P+ G A G+ + F PS +F+ F Sbjct: 123 VNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFADTHF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +++ + RLREL+FLNS V I+L+D+R+ RE T Y+GGI AFV +L+R K + S Sbjct: 182 HFEIIAKRLRELAFLNSGVHITLLDERA--SREETFHYEGGIRAFVEHLNRSKTAIHPSV 239 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + G RD I ++ A++WN+GY+E VLCFTNNIPQ DGGTHL+G R ALTR + Y+E+ Sbjct: 240 ITLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYMERE 299 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K K +V G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VES +++ L+ + Sbjct: 300 GIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEALTMF 359 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L+EHP EA+ I K+++A+ R+AARRAR+LTRRKG LDIA+LPGKLADC E+DP + E+ Sbjct: 360 LDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADCQEKDPAQCEI 419 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 +LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFD+MLSS EIGTLITALGTGIG Sbjct: 420 YLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTLITALGTGIGA 479 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY + +G Sbjct: 480 GDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIAQPPLYKVKKG 539 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K +Y+KD+ L YL ++ ++ L + I+ L++ Sbjct: 540 KEERYLKDDGELAAYLREIAMQGAQFRPAADAEPVTDEQLGGMMRQYQNIEALVQRLERR 599 Query: 608 HDKTFIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEK---SWHGSINNSDIL 663 + T + ES A +L L A +E G ++ Sbjct: 600 YPSTLLWALATLPPIVAESADSATWDDFARQLRAALEVNALPAEHYTVERVGEAEALRLV 659 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V+R G E + ++ ++ +IE + + ++ + + Sbjct: 660 VRREHHGSVELRFFDQDFFAGGEYRHLADYARQIEGKIGVGARMERGERGLAVSRFRTAM 719 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + + R+G+ +QRYKGLGEMN QLWETT+N R L+RV + DA AD++FS LMGD Sbjct: 720 DWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAIAADEVFSMLMGD 779 Query: 784 EVEPRREFIQENSLPS-ALDI 803 VEPRR FI+EN+ LDI Sbjct: 780 AVEPRRRFIEENARFVSRLDI 800 >gi|198282152|ref|YP_002218473.1| DNA gyrase subunit B [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246673|gb|ACH82266.1| DNA gyrase, B subunit [Acidithiobacillus ferrooxidans ATCC 53993] Length = 801 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 404/804 (50%), Positives = 537/804 (66%), Gaps = 8/804 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ SIQ+LKGL+AV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY D I Sbjct: 1 MMMETYDSSSIQVLKGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALGGYCDTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S ++SDNGRGIP D+H EG SAAEVIMT LHAGGKF+ +YKVSGGLHGVG Sbjct: 61 IVTIHEDESVSISDNGRGIPVDMHAGEGRSAAEVIMTVLHAGGKFDDNAYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+LRI R+G ++ + +G P+ G A G+ + F PS +F+ Sbjct: 121 VSVVNALSETLQLRIFRDGYVWTQEYHDGEPQAPIAR-GDASRKHGSTIRFKPSPQVFAD 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+++ + RLREL+FLNS V I+L+D+R+ RE T Y+GGI AFV +L+R K + Sbjct: 180 THFHFEIIAKRLRELAFLNSGVHITLLDERA--SREETFHYEGGIRAFVEHLNRSKTAIH 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + G RD I ++ A++WN+GY+E VLCFTNNIPQ DGGTHL+G R ALTR + Y+ Sbjct: 238 PSVITLTGERDGIVVEAALQWNEGYNEAVLCFTNNIPQADGGTHLAGFRGALTRTLNQYM 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E+ K K +V G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV+ +VES +++ L Sbjct: 298 EREGIIAKAKVAVSGEDAREGLTAVLSVKVPDPKFSSQTKEKLVSSEVKPIVESSMSEAL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L+EHP EA+ I K+++A+ R+AARRAR+LTRRKG LDIA+LPGKLADC E+DP + Sbjct: 358 TMFLDEHPKEAQAIAAKIVEAARAREAARRARELTRRKGALDIANLPGKLADCQEKDPAQ 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E++LVEGDSAGGSAKQGR R +QAILPL+GKILNVERARFD+MLSS EIGTLITALGTG Sbjct: 418 CEIYLVEGDSAGGSAKQGRDRRHQAILPLKGKILNVERARFDRMLSSDEIGTLITALGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG FD+ KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY + Sbjct: 478 IGAGDFDVAKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPDLVARGHIYIAQPPLYKV 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK +Y+KD+ L YL ++ ++ L + I+ L++ Sbjct: 538 KKGKEERYLKDDGELAAYLREIAMQGAQFRPAADAEPVTDEQLGGMMRQYQNIEALVQRL 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEK---SWHGSINNS 660 + T + ES A +L L A +E G Sbjct: 598 ERRYPSTLLWALATLPPIVAESADSATWDDFARQLRAALEVNALPAEHYTVERVGEAEAL 657 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 ++V+R G E + ++ ++ +IE + + ++ Sbjct: 658 RLVVRREHHGSVELRFFDQDFFAGGEYRHLADYARQIEGKIGVGARMERGERGLAVSRFR 717 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + +D + + R+G+ +QRYKGLGEMN QLWETT+N R L+RV + DA AD++FS L Sbjct: 718 TAMDWLLADARRGVEIQRYKGLGEMNPEQLWETTMNAANRRLVRVDVEDAIAADEVFSML 777 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPRR FI+EN+ LDI Sbjct: 778 MGDAVEPRRRFIEENARFVSRLDI 801 >gi|27375934|ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] gi|27349072|dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110] Length = 811 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 454/804 (56%), Positives = 585/804 (72%), Gaps = 8/804 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + S Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+A Sbjct: 13 EPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHAT 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V LN D S TV D+GRGIP D+HK EGISAAEVIMT+LHAGGKF+Q SYKVSGGLHG Sbjct: 73 RVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L LRI R+ + + F +G PLVV G A GTEVTFL S D F Sbjct: 133 VGVSVVNALSSKLGLRIWRDNKEHYIEFAHGDAVAPLVVVGDAPGKRGTEVTFLASPDTF 192 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++++ TL+HRLREL+FLNS V I+L D R + M Y GG+E FV YLDR+KK Sbjct: 193 KNIEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKREEMHYSGGVEEFVKYLDRNKKA 252 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ +PI ++ + I ++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTRQ+ Sbjct: 253 IVPAPIMVRAEANGIGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNG 312 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E + +KK+K ++ GDDCREG T+VLS+K+PDP+FSSQTK+KLVSSEVR VVE+ +N+ Sbjct: 313 YAEAN--AKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVLNE 370 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L AW EEHP EAK+IV KV+ A+ R+AAR+AR+LT RK L ++SLPGKLADC E+DP Sbjct: 371 ALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELT-RKSPLSVSSLPGKLADCQEKDP 429 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSELF+VEGDSAGGSAKQGR+RE QA+LPLRGKILNVER R DKML S++IGTLITALG Sbjct: 430 AKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKMLGSEQIGTLITALG 489 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D F I KLRYHKII+MTDADVDGAHIRTLLLTFF+RQM +I G+LYI +PPLY Sbjct: 490 TGI-SDEFSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRDIIDGGYLYIAQPPLY 548 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 ++RGKS QY+KDE +LEDYLI L + I S DLR IDDA + +++ Sbjct: 549 KVSRGKSEQYLKDERALEDYLIETGLDDCIFTPGTGGD-RSGRDLRGLIDDARVVRSILR 607 Query: 603 DFYPNHDKTFIEQAVISGVFNCESD--QEINVSLASKLANRLNFIAEKSEKSWHGS-INN 659 + + +++ +EQA I+GV N + + + A +A RL+ AE E+ W G + Sbjct: 608 NLHTRYNRKVVEQAAITGVLNKDIYGDPDKAAAAAQYVAGRLDKQAEDVERGWVGHYVEG 667 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +R RGV++ +++ + + S ++ F+ ++++ Y +L + + GP Sbjct: 668 QGFQFERTVRGVKDVAIIDSAFLGSAEARKLDEFTPKLQDVYARPGNLRRKDVEHTVHGP 727 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L + + GRKG+++QRYKGLGEMN QLWETTL+ + RSLL+VK+ + +ADD+F++ Sbjct: 728 VDLFEAVTDAGRKGVTLQRYKGLGEMNPEQLWETTLDTNARSLLQVKVKEVDEADDIFTK 787 Query: 780 LMGDEVEPRREFIQENSLPSALDI 803 LMGD VEPRR+FIQE+SL + +DI Sbjct: 788 LMGDVVEPRRDFIQEHSLSATIDI 811 >gi|172059070|ref|YP_001806722.1| DNA gyrase subunit B [Burkholderia ambifaria MC40-6] gi|171991587|gb|ACB62506.1| DNA gyrase, B subunit [Burkholderia ambifaria MC40-6] Length = 824 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 392/828 (47%), Positives = 539/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E PL+AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E + + S++ + A L Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + ++R G V++ + + +N Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVATANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FTGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|319780074|ref|YP_004139550.1| DNA gyrase, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165962|gb|ADV09500.1| DNA gyrase, B subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 823 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 493/825 (59%), Positives = 613/825 (74%), Gaps = 24/825 (2%) Query: 1 MSDNIQNSS-----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MSD I N++ Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MSDQIDNNNGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD++TVTLN DGS TV DNGRGIPTD+H EGISAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHADLVTVTLNPDGSVTVIDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-------- 167 VSGGLHGVGVSVVNALS+WLKL+I+R G I+EMSF +G D PL TG+ Sbjct: 121 VSGGLHGVGVSVVNALSAWLKLKIRRNGQIFEMSFTHGNADAPLKATGTYEQDKQPGTYE 180 Query: 168 -DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 +G+++TF PS++ F++ +F++ TL+HRLREL+FLNS V+I L D R + + Y Sbjct: 181 GRSGSQITFFPSAETFTMVEFDFGTLEHRLRELAFLNSGVRIILTDARHADVVRHELHYD 240 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GG+E FV YLDR KKPL+ PI I+ RD I++++AM WND YHENVL FTNNIPQ+DGG Sbjct: 241 GGLEEFVKYLDRVKKPLIDKPIAIRAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGG 300 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 THL+G R ALTRQIT Y E S +KK+K S+IGDDCREG T+VLS+K+PDP+FSSQTK+K Sbjct: 301 THLAGFRGALTRQITGYGESSGLTKKEKVSLIGDDCREGLTAVLSVKVPDPKFSSQTKDK 360 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 LVSSEVR VVE VN+ L WLEEHP E K++V KV+ A+ R+AAR+ARD+T RK L Sbjct: 361 LVSSEVRPVVEGLVNEALGTWLEEHPSEGKVVVDKVIQAAAAREAARKARDIT-RKSSLG 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 + SLPGKLADC ERDP KSE+F+VEGDSAGGSAK GRSR+NQAILPLRGKILNVERARFD Sbjct: 420 VTSLPGKLADCQERDPAKSEIFIVEGDSAGGSAKGGRSRQNQAILPLRGKILNVERARFD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +ML S IGTLITALGT IG+D F+ +KLRYHKII+MTDADVDGAHIRTLLLTFFFRQMP Sbjct: 480 RMLGSDMIGTLITALGTSIGKDEFNADKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMP 539 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G LYI +PPLY +TRGKS QY+KDE + E++LI L E S V D Sbjct: 540 ELIERGHLYIAQPPLYKVTRGKSSQYIKDESAFEEFLIGSGLEEASL-TLGSGEVRIGQD 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF 644 LR IDDAL + +LI + +++ +EQA I+G N + ++ +A ++A RL+ Sbjct: 599 LRGAIDDALAVRQLINGLHTRYNRGVVEQAAIAGGLNPDVFADLGRANDMAERIAKRLDI 658 Query: 645 IAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 IAE +E+ W G + + +R R V+E L+ + I S ++ ++ R+ E Sbjct: 659 IAEDTERGWTGRMSTSNEGVGGYVFERTVRSVKEYAHLDLALINSADARQLDRYAQRLSE 718 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 Y + L I+GP ++L+ +F+ GRKG++MQRYKGLGEMNA QLWETTL+P+ Sbjct: 719 VYGSPPVLRRKDVSETISGPLAMLNAVFATGRKGLTMQRYKGLGEMNAEQLWETTLDPNV 778 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 RSLL+VK+ DA+ AD LFSRLMGDEVEPRREFIQ+N+L LDI Sbjct: 779 RSLLQVKVNDATDADSLFSRLMGDEVEPRREFIQDNALSVANLDI 823 >gi|241762428|ref|ZP_04760506.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753854|ref|YP_003226747.1| DNA gyrase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|241373022|gb|EER62680.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553217|gb|ACV76163.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 812 Score = 900 bits (2325), Expect = 0.0, Method: Composition-based stats. Identities = 427/816 (52%), Positives = 576/816 (70%), Gaps = 17/816 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Q+ YDA SI++L+GLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L GY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116 D++ + + DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+ + YKV Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS +L+L + R+G + M F +G+ PL V G A + GT V F Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+ + + +FY+GGI AFV +L Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K L+ P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+ R+AL Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + +Y +KS KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR + Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + D ++ WLEE+P AK+I++K++DA+ R+AA+RAR+LTRRKGV+DIASLPGKLAD Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPL+ + + +S Y+KDE +L++YL++ ++ + + S NDL ++ A + Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLHTDNGDR--SGNDLHQMVEHARR 596 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 L+ + IE A ++G F + E + ++A L +S+ W Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709 L +R+ RGV + L+ + I S + + E+Y++ L+ Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISAHPARLVTLAAQM 716 Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I P L + I ++G KG+S+ RYKGLGEMN QLWETTL+P RS+L+V++ Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A AD++FSRLMGD VEPRR+FIQ+N+L LD+ Sbjct: 777 QADVADEIFSRLMGDVVEPRRDFIQQNALSVANLDV 812 >gi|330814959|ref|YP_004358664.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3] gi|327367352|gb|AEA58708.1| DNA gyrase, B subunit [Burkholderia gladioli BSR3] Length = 825 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 388/828 (46%), Positives = 533/828 (64%), Gaps = 28/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MTEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +++DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISITDNGRGIPTDVKMDDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L +KR G + M F G+ +P+ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLVVKRNGKKHFMEFHRGVAQDRVLETRDGVEVSPMA 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPL+ I GK +Y+KDE L +++ +L Sbjct: 538 LYRQMPEMIERGYVYIAQPPLFKIKAGKDERYLKDESELNAHMLRLALQGSELQPGSGAD 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS L L ++ +D +E + + + S ++ A Sbjct: 598 AISGEALGALARSYLLSRAVVGRLGRLYDPAALEAVMDGVAIDLAGEDAALKSASALQAA 657 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L A K+E + + + ++R G V++ + + K ++ Sbjct: 658 MLESDAMKNEVRVIPTYDEVREHWSLRIERPHHGNVRVSVIDEEFLLTADYKQLVSTADT 717 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 ++ + + + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 718 FKDLIGEGALIKRGERSQAVKDFKGAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMD 777 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 778 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 825 >gi|56552479|ref|YP_163318.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4] gi|56544053|gb|AAV90207.1| DNA gyrase, B subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 812 Score = 899 bits (2324), Expect = 0.0, Method: Composition-based stats. Identities = 427/816 (52%), Positives = 576/816 (70%), Gaps = 17/816 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Q+ YDA SI++L+GLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L GY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116 D++ + + DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+ + YKV Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS +L+L + R+G + M F +G+ PL V G A + GT V F Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+ + + +FY+GGI AFV +L Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K L+ P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+ R+AL Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + +Y +KS KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR + Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + D ++ WLEE+P AK+I++K++DA+ R+AA+RAR+LTRRKGV+DIASLPGKLAD Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPL+ + + +S Y+KDE +L++YL++ ++ + + S NDL ++ A + Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLHTDNGDR--SGNDLHQMVEHARR 596 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 L+ + IE A ++G F + E + ++A L +S+ W Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709 L +R+ RGV + L+ + I S + + E+Y++ L+ Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISTHPARLVTLAAQM 716 Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I P L + I ++G KG+S+ RYKGLGEMN QLWETTL+P RS+L+V++ Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A AD++FSRLMGD VEPRR+FIQ+N+L LD+ Sbjct: 777 QADVADEIFSRLMGDVVEPRRDFIQQNALSVANLDV 812 >gi|254246825|ref|ZP_04940146.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Burkholderia cenocepacia PC184] gi|124871601|gb|EAY63317.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Burkholderia cenocepacia PC184] Length = 833 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 396/828 (47%), Positives = 543/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 10 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 69 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 70 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 129 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P++ Sbjct: 130 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 189 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 190 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 246 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 247 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 306 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 307 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 366 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++TR Sbjct: 367 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 426 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 427 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 486 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 487 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 546 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 547 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 606 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I +D +E AV+ GV S++E + A L Sbjct: 607 AISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 665 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 666 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 725 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 726 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 785 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 786 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 833 >gi|254451957|ref|ZP_05065394.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238] gi|198266363|gb|EDY90633.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238] Length = 775 Score = 899 bits (2323), Expect = 0.0, Method: Composition-based stats. Identities = 433/775 (55%), Positives = 561/775 (72%), Gaps = 3/775 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM+YEV+DN IDE+L G+AD + V ++ DGS +VSDNGRGIP +H+ Sbjct: 1 MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADAVNVKIHDDGSISVSDNGRGIPVGIHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVVNALS +L+LRI R G + Sbjct: 61 GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDYLELRIWRNGKEHYAR 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G L V G+ TGTEV FL S D FS +DF ++TL+ RLREL+FLNS V+I Sbjct: 121 FEGGFTVKHLEVVADCGDRTGTEVRFLASLDTFSNRDFYFETLEKRLRELAFLNSGVRII 180 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R E ++Y GG++ FV YLDR K ++ PI + G RD I +++AM WND Y Sbjct: 181 LTDERPAEHLVSELYYDGGVKEFVKYLDRSKTSILPEPIYVIGERDEIVVEVAMWWNDSY 240 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 +E VL FTNNIPQ+DGGTH++G R+ALTR I +Y + S +KK+K S GDD REG T V Sbjct: 241 NEMVLPFTNNIPQRDGGTHMAGFRAALTRTINNYAQSSGIAKKEKISFTGDDAREGLTCV 300 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEVR VE+ +N+ LS W EE+P A+I+V K+++A+ R Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVENIMNEKLSEWFEENPQIARIVVSKIVEAAHAR 360 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AAR+ARDLTRRK +D+ L GKL DCSE+DP K+E+FLVEGDSAGGSA+ GR R+ QA Sbjct: 361 EAARKARDLTRRKTAMDVNFLAGKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRQTQA 420 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F+I+KLRYHKI+IMTDADVD Sbjct: 421 ILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDKLRYHKIVIMTDADVD 480 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 GAHIRTLLLTFFFRQMP LI G LYI +PPLY ++RGKS Y+KD+ ++ DYL Q + Sbjct: 481 GAHIRTLLLTFFFRQMPQLIERGHLYIAQPPLYKVSRGKSEVYLKDQAAMNDYLTEQGVE 540 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + + I DLR +D+A ++ +++ F ++ + +EQA I+G F + + Sbjct: 541 GAML-RQGNGEEIGGADLRRVVDEAGRLKRVLDAFPTHYPRHILEQAAIAGAFVSGAVEA 599 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 +A K+A RL+ IA + E+ W G I + I + RI RGV+E L+G + S ++ Sbjct: 600 DLQGVADKVAARLDLIANEWERGWQGRITQDKGIRLARILRGVEEVRTLDGPMMRSGEAR 659 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 F+ +++ Y T +LI I GP LL + G +G+S+QRYKGLGEMN S Sbjct: 660 KSGTFTQHLQDVYNTPATLIRKDRVQNIYGPLDLLKAVLEEGERGLSLQRYKGLGEMNPS 719 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ+N+L LD Sbjct: 720 QLWETTLDPDARTLLQVKVDDVAEADDLFTKLMGDVVEPRREFIQQNALNVENLD 774 >gi|254468460|ref|ZP_05081866.1| DNA gyrase, B subunit [beta proteobacterium KB13] gi|207087270|gb|EDZ64553.1| DNA gyrase, B subunit [beta proteobacterium KB13] Length = 797 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 414/806 (51%), Positives = 553/806 (68%), Gaps = 12/806 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +N +Y +DSI++LKGL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTE--ENKAYSSDSIKVLKGLEAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 D I V ++ D S +V DNGRGIPTD+ + EE SAAE++MT LHAGGKF+Q SYKVSG Sbjct: 59 CDDIKVIIHPDNSVSVQDNGRGIPTDIKEDDEEKRSAAEIVMTELHAGGKFDQNSYKVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS WLKL++ R I+E+ F G L + G + TGTEV FLPS Sbjct: 119 GLHGVGVSVVNALSDWLKLKVHRNNKIHEIEFARGERKESLKIIGDT-DKTGTEVQFLPS 177 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 F+ +F+++ L R+RELSFLN+ V+I LID R+ + + GG+ FV YL++ Sbjct: 178 VSTFTDINFHFEILAKRIRELSFLNNGVKIELIDHRTGKS--ENFAFSGGVTGFVEYLNK 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + ++P +G +D I+++++M+WND Y ENV CFTNNIPQ+DGGTHL+GLR A+TR Sbjct: 236 TKTTIHKNPFSAEGEKDGITVEVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRGAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y+E + +KK K GDD REG + VLS+K+P+P+FSSQTK+KLVSSEV+ VV+ Sbjct: 296 TINTYIESNDLAKKAKVDTTGDDMREGLSCVLSVKVPEPKFSSQTKDKLVSSEVQPVVQD 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V L+ +L EHP +AKII K++DA+ R+AAR+ARD+TRRKG +D LPGKLADC Sbjct: 356 VVAKKLTDYLLEHPADAKIICGKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLADCQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL+LVEGDSAGGSAKQGR R+NQAILPL+GKILNVE+AR DK+LSSQEI TLI Sbjct: 416 EKDPSLSELYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVEKARLDKLLSSQEIATLI 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGI +D F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ NG++YI + Sbjct: 476 TALGTGIDKD-FNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPQLVENGYVYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ + + K QY+KDE+ LE YLI +L K +IS L N + + D Sbjct: 535 PPLFKVRQNKKEQYLKDEQELEQYLIESALDGAELKI--DKNIISGESLGNLAREMILND 592 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 +I+ +D + ++ + G N + +E +S KL N + + + + Sbjct: 593 AVIRRLAHRYDSSILKAIYLCGDINLD-SEEAALSYVEKLKNSSSIENINFDVKKNPNSE 651 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 I + + G VL+ + S K S+ ++ ++ N +++ Sbjct: 652 KFMIEINQFRHGNLITSVLDEEFLLSGDYKQIIKTSSLTKDLIQEKATISRNDKALEVGE 711 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD + S + G+++QRYKGLGEMN SQLWETT++P R LL+VKI DA AD +FS Sbjct: 712 FKEALDWLMSEAKSGLNIQRYKGLGEMNPSQLWETTMDPSVRRLLQVKIEDAISADQVFS 771 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ N+L LDI Sbjct: 772 TLMGDQVEPRRNFIESNALGVNNLDI 797 >gi|160871558|ref|ZP_02061690.1| DNA gyrase, B subunit [Rickettsiella grylli] gi|159120357|gb|EDP45695.1| DNA gyrase, B subunit [Rickettsiella grylli] Length = 847 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 390/804 (48%), Positives = 530/804 (65%), Gaps = 13/804 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDESL GY I + L+ Sbjct: 47 YDSSNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCSQIDIILH 106 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS TV DNGRGIP D+H EE SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVN Sbjct: 107 SDGSVTVKDNGRGIPVDIHTEENRSAAEVIMTVLHAGGKFDSNSYKVSGGLHGVGVSVVN 166 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FN 188 ALS L L I+R N+YE ++ G PL +TG + GTE+ F P+ IF + F+ Sbjct: 167 ALSEKLHLIIRRNNNVYEQTYRLGEPTAPLQITG-TTQERGTEIRFYPNKLIFQQNNKFH 225 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 YD L RLRELSFLNS V I++ D+R+ E + Y GGI+AFV YL+++K + + P Sbjct: 226 YDILLKRLRELSFLNSGVAINITDERTNEETQ--FKYIGGIKAFVEYLNQNKTLIHKQPF 283 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 RD IS+++A++WND + EN+ CFTNNI Q+DGGTHL+G R+ALTR + +Y+E Sbjct: 284 YFSAERDGISVEVALQWNDSFQENIFCFTNNISQRDGGTHLAGFRAALTRTLNTYIEHEA 343 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 +KK K + GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +VE+ ++ L A+L Sbjct: 344 TNKKLKIATTGDDTREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVETLTSEKLEAFL 403 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 E P +A+ I+ K++DA+ R+AAR+AR++TRRK LDIA LPGKLADC E DP ELF Sbjct: 404 LETPQDARAIMMKIIDAARAREAARKAREMTRRKTALDIADLPGKLADCQETDPALCELF 463 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAKQGR+R QAILPL GKILNVE++RFDKMLSS+ +GTLI ALG GIG++ Sbjct: 464 IVEGDSAGGSAKQGRNRRYQAILPLTGKILNVEKSRFDKMLSSEAVGTLIIALGCGIGKE 523 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY I +GK Sbjct: 524 EYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLQRGTIYIAQPPLYKIKKGK 583 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 QY+KD+ +L+ YL +L I I L I + K +I+ + Sbjct: 584 QEQYLKDDAALQAYLTQTALHNAILYPHSESFSIQGIGLETLIMNYRKTQMIIQHLSRRY 643 Query: 609 DKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINN------S 660 ++ + E+ + + +L + + +I Sbjct: 644 PIDALQVILDLPPLPSETLADSTKMLEWTKSWHMQLQKTTDNEAIRYQITIREDTERQVF 703 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + +G++ + + + + + ++ + + K + Sbjct: 704 LPEITINTQGLETLYKISYDFFKTPEYQCLFDMATQLYGLIGPGAYVQRDTKKQTVKNFK 763 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + + R+G ++QRYKGLGEMN QLW+TT++P+TR L+RV I DA D +F+ L Sbjct: 764 EVYEWLLAEARRGQAIQRYKGLGEMNPDQLWQTTMDPNTRCLVRVTIEDAIATDQIFTTL 823 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRR+FIQ+N+L LDI Sbjct: 824 MGDQVEPRRDFIQQNALEVGNLDI 847 >gi|134294131|ref|YP_001117866.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4] gi|134137288|gb|ABO53031.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4] Length = 824 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 395/828 (47%), Positives = 537/828 (64%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F GI +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGIAQDRVLEQVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPTDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP ++ G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 FYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENGA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I +D +E + + S +E + A L Sbjct: 598 AISGDALGELARSYLLSQSVIGRLSRLYDPAALEAIMDGVSIDL-SSEESTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ K+E + + V+R G V++ + + + Sbjct: 657 ALHDETLKNEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 E + + +T S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FEGLIQAGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PTVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|107024100|ref|YP_622427.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054] gi|116688027|ref|YP_833650.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424] gi|105894289|gb|ABF77454.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054] gi|116646116|gb|ABK06757.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424] Length = 824 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 396/828 (47%), Positives = 542/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I +D +E AV+ GV S++E + A L Sbjct: 598 AISGDALGELARSYLLSQSVIDRLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 657 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|170731359|ref|YP_001763306.1| DNA gyrase subunit B [Burkholderia cenocepacia MC0-3] gi|169814601|gb|ACA89184.1| DNA gyrase, B subunit [Burkholderia cenocepacia MC0-3] Length = 824 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 395/828 (47%), Positives = 541/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E AV+ GV S + + A L Sbjct: 598 AISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 657 ALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|206558823|ref|YP_002229583.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315] gi|198034860|emb|CAR50732.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315] Length = 824 Score = 898 bits (2322), Expect = 0.0, Method: Composition-based stats. Identities = 395/828 (47%), Positives = 543/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIEVVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV ++++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEFINKTKSTLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E AV+ GV S++E + A L Sbjct: 598 AISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEESTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 657 ALHDEALKNEVRVVPSYDPVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|255068060|ref|ZP_05319915.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256] gi|255047658|gb|EET43122.1| DNA gyrase, B subunit [Neisseria sicca ATCC 29256] Length = 834 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 39 MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 97 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 98 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 157 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 158 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 216 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I LID+R + + GG+ FV Y++R K Sbjct: 217 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 274 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 275 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 334 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 335 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 394 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 395 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 454 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 455 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 514 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 515 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 574 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 575 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 632 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ N Sbjct: 633 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 691 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ + Sbjct: 692 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 750 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + L+ + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 751 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 810 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 811 MGDEVEPRRAFIENNALIAQNID 833 >gi|238025687|ref|YP_002909918.1| DNA gyrase subunit B [Burkholderia glumae BGR1] gi|237874881|gb|ACR27214.1| DNA gyrase, B subunit [Burkholderia glumae BGR1] Length = 825 Score = 898 bits (2320), Expect = 0.0, Method: Composition-based stats. Identities = 387/828 (46%), Positives = 536/828 (64%), Gaps = 28/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MTEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +++DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISITDNGRGIPTDVKLDDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P+ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLVVRRNGKKHFMEFHRGVAQNRVLETRDGVEVSPME 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 181 VVGETE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFVGGVKGFVEYINKTKSVLHPTIFHIIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPL+ + GK +Y+KDE L +++ +L Sbjct: 538 LYRQMPDMIERGYVYIAQPPLFKVKAGKDERYLKDEGELNAHMLRLALHGSELQPGGEAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +++ +D +E + + +Q S + A Sbjct: 598 AISGDALGALARSYLLSRGVVERLGRLYDPAALEAIMDGVAIDLAGEQAATASAEALQAA 657 Query: 641 RLNFIAEKSEK----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L + K+E + + + + ++R G V++ + + K ++ Sbjct: 658 MLAGDSMKNEVRVKTRYDEAREHWSLRIERPHHGNVRISVIDEEFLLTADYKQLVSTADT 717 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 ++ + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 718 FKDLIGEGALIKRGERSQAVKDFKSAMQWLMADAERNVSKQRYKGLGEMNPEQLWETTMD 777 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 778 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 825 >gi|170697756|ref|ZP_02888843.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10] gi|170137371|gb|EDT05612.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10] Length = 824 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 392/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E PL+AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E + + S++ + A L Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + ++R G V++ + + ++ Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVTTADT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|298370306|ref|ZP_06981622.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281766|gb|EFI23255.1| DNA gyrase, B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 796 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTDQKHK-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I LID+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ N Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + L+ + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|171316343|ref|ZP_02905563.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5] gi|171098472|gb|EDT43274.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5] Length = 824 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 392/828 (47%), Positives = 538/828 (64%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEQVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E PL+AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E + + S++ + A L Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + ++R G V++ + + +N Sbjct: 657 ALHDDALKNEVRVVPSYDPVREQRSLHIERTHHGNVRVSVIDQEFQHTADYQQLVATANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FTGLIGEGAVIKRGERSMAVNDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|319785624|ref|YP_004145099.1| DNA gyrase subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317464136|gb|ADV25868.1| DNA gyrase, B subunit [Pseudoxanthomonas suwonensis 11-1] Length = 811 Score = 897 bits (2317), Expect = 0.0, Method: Composition-based stats. Identities = 412/813 (50%), Positives = 537/813 (66%), Gaps = 12/813 (1%) Query: 1 MSDNIQNSS---YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ +S+ YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN+IDE+L Sbjct: 1 MSEQTPSSTPGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A+ + V + DGS VSDNGRGIP D HKEEG SAAEVI+T LHAGGKF+ SYKVS Sbjct: 61 AGHANEVIVRILEDGSVAVSDNGRGIPVDTHKEEGRSAAEVILTVLHAGGKFDDNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS L L I R+G ++ + G PL + GT + F P Sbjct: 121 GGLHGVGVSVVNALSEHLWLDIWRDGFHWQQEYSLGEPLYPLKQL-EPSDKRGTSLRFKP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + +IF+ F+Y+ L RLRELSFLNS V+++LID+R E R+ T Y+GGI +FV +L Sbjct: 180 AVEIFTDVQFHYEILARRLRELSFLNSGVKVTLIDER-GEGRQDTFQYEGGIRSFVEHLA 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + K PL + I + G + I +++A++W D Y E + CFTNNIPQKDGGTHL+G R+ALT Sbjct: 239 QLKTPLHPNVISVSGEHNGIVVEVALQWTDAYQETMFCFTNNIPQKDGGTHLAGFRAALT 298 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R +T+Y+E++ +K+ K S GDD REG +VLS+K+PDP FSSQTKEKLVSSEV+ VE Sbjct: 299 RTLTNYIEQNGLAKQAKVSFSGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSEVKPAVE 358 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + L +L+EHP EAK IV+KV+DA+ R+AAR+AR+LTRRKG LDIA LPGKLADC Sbjct: 359 NTFGARLEEFLQEHPQEAKAIVEKVVDAARAREAARKARELTRRKGALDIAGLPGKLADC 418 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+GTL Sbjct: 419 QEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVGTL 478 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI Sbjct: 479 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELLERGHVYIG 538 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY I +GK Y+KD+ +L+ YL + ++ + D + I+ L + Sbjct: 539 LPPLYKIKQGKQELYLKDDAALDAYLASSAVDNAALVPADGEPPITGEGLEKLLLAYAAA 598 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCES-DQEINVSLASKLANRLN---FIAEKSEKSW 653 I D +E V + E +E L RLN + + Sbjct: 599 RDTITRSAHRFDPMLLEALVDFAPLDSEHLLREGGADALKALEARLNRGKLGSPRFSLEL 658 Query: 654 HGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 +I + + + + R G Q Q VL + S + + + +I Sbjct: 659 LPAIEDRPAALRLTRRHMGEQVQQVLPLTIFESGELRPLHDAAVLLHGLVREGAQVIRGN 718 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 +T + +KG +QR+KGLGEMN QLWETT+NPDTR LLRV+I DA Sbjct: 719 RSQAVTSFAEAQAWLMDEAKKGRQIQRFKGLGEMNPEQLWETTVNPDTRRLLRVRIEDAV 778 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +FS LMGD VEPRREFI+ N+L LD+ Sbjct: 779 AADQIFSTLMGDVVEPRREFIENNALKVANLDV 811 >gi|329891030|ref|ZP_08269373.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568] gi|328846331|gb|EGF95895.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568] Length = 809 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 453/811 (55%), Positives = 574/811 (70%), Gaps = 12/811 (1%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ S Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G Sbjct: 1 MTEQTAPSPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD++TVTLN DGS TV+DNGRGIPT +H EEGISAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADLVTVTLNEDGSVTVTDNGRGIPTAIHAEEGISAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTE 172 LHGVGVSVVNALS WL+L I R+G + + F G L V G A TGTE Sbjct: 121 LHGVGVSVVNALSDWLELVIYRDGKKHSVRFERGETVRSLAVVGDAPMREDKGRLLTGTE 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 VTF PS FS DF+ TL+HRLREL+FLNS V I L D R EP EI + Y+GG+EAF Sbjct: 181 VTFFPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLSDHRGAEPIEIMLHYEGGVEAF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +LD+ K P+++ I I+G +D I +DLA+ WND YHE +LCFTNNIPQ+DGGTHLS Sbjct: 241 VRHLDKSKTPILKDVIVIRGQKDGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R++LTR + SY+E S +KK+K + G+D REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RASLTRVMGSYIESSGLAKKEKVAPTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VES ++GL+ W EEHP+EAK+IV K+++A+ R+AAR+ARDLTRRK L+I+SLPG Sbjct: 361 RPAVESLCSEGLATWFEEHPVEAKMIVSKIIEAASAREAARKARDLTRRKSALEISSLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSD 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 IGTLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI G Sbjct: 481 LIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELIERG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +++GK +YVKD+ ++ YLI + +E S V + DL+ + Sbjct: 541 HVYIAQPPLYKVSKGKQHRYVKDQAEMDAYLIEEGSAEAALELA-SGEVRAGRDLQELVR 599 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +A L+ IEQ ++G+F+ + + + + + N AE+ + Sbjct: 600 EAKGFKALVDRLATRAPAFAIEQGALAGLFSENAGELADRAARAAERL--NLYAEEGDGP 657 Query: 653 WHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 W G + + R+ R V E VL+ S ++ + + + Sbjct: 658 WSGELAAQGGVAFNRVRRAVSETIVLDEVLGRSLDARRLAERAVAFDGLFSAPAVYRRKD 717 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 I GP LL + G+KGI++QRYKGLGEMN QLWETTL+ + R+LL+VK+ Sbjct: 718 KTTTIRGPLDLLAAVLDAGKKGIAIQRYKGLGEMNPEQLWETTLDANARTLLQVKVEHGD 777 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALD 802 ADDLF++LMGD VEPRREFIQ+N+L +A+D Sbjct: 778 DADDLFAKLMGDVVEPRREFIQDNALDAAVD 808 >gi|254295377|ref|YP_003061400.1| DNA gyrase subunit B [Hirschia baltica ATCC 49814] gi|254043908|gb|ACT60703.1| DNA gyrase, B subunit [Hirschia baltica ATCC 49814] Length = 813 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 445/818 (54%), Positives = 576/818 (70%), Gaps = 20/818 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ QN+ Y A SI++LKGL+AV+KRP MYIGDTD SGLHHMIYEV+DNAIDE+L G+ Sbjct: 1 MTEPTQNAEYGAGSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMIYEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD +TVTL+ DGS ++SDNGRG+P DLH EGISAAEVIMT+LHAGGKF+ SYKVSGGL Sbjct: 61 ADYVTVTLHPDGSASISDNGRGVPVDLHPTEGISAAEVIMTQLHAGGKFDDNSYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTEV 173 HGVGVSVVNALS WL+L I R G Y M F +G+ D PL + G A TGTEV Sbjct: 121 HGVGVSVVNALSEWLQLSINRNGKRYSMRFTHGVSDAPLEIVGDAPMRPDGTRPETGTEV 180 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FLPS+D F++ +F +TL+HRLREL+FLNS V+I D+R EP E + Y+GG+ AFV Sbjct: 181 RFLPSTDTFTMVEFKRETLEHRLRELAFLNSGVKIVFRDERPAEPIETILEYEGGVVAFV 240 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +LD+ + ++ I+ + +D +++D A++WNDGYHENVLCFTNNIPQ+DGGTHL+G R Sbjct: 241 EHLDKSRTKILPEAIQARAEKDGMTVDAALQWNDGYHENVLCFTNNIPQRDGGTHLAGFR 300 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y + + +KK+K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR Sbjct: 301 AALTRVINKYAQATGVAKKEKVDISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 360 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V++ + + LS W EE+P EAKII++K++ A+ R+A RRARDL RRK LDI SLPGK Sbjct: 361 PIVDNLMTEALSTWFEENPNEAKIIMQKIVQAAAAREAMRRARDLARRKTALDITSLPGK 420 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC E+DP KSELF+VEGDSAGGSAKQGR+RENQA+LPLRGKILNVERARFD+ML S + Sbjct: 421 LADCQEKDPAKSELFIVEGDSAGGSAKQGRNRENQAVLPLRGKILNVERARFDRMLGSDQ 480 Query: 474 IGTLITALGTGIGQDS-------FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +GTLITALG IG+ S F +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP Sbjct: 481 VGTLITALGASIGRRSEENPNEGFQPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMP 540 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G L+I +PPLY +G+S +Y+KD+ ++ +LI + S E + I D Sbjct: 541 ELIERGHLFIAQPPLYKAEKGRSSRYLKDDAEMDAFLIEEGTSGETLILST-GEQIGGED 599 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 LR + DA + +EQA I+G + + A A RLN +A Sbjct: 600 LRERVRDAAAFKHTLSRLALRAPAFILEQAAIAGA----MAEGAGDAEAKLTAERLNILA 655 Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 E+ E +W N ++++R R V E+ L+ + + +K + + Sbjct: 656 EEGENTWTAKFENGGLVLEREVRNVMERAALDATLLALPDAKRLSERGKEMSSIFRESGR 715 Query: 707 LI-CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L G ++++ GP SLL + G KGI +QRYKGLGEMN QLWETTL+ + RSLL+V Sbjct: 716 LRHEKGGEVEVFGPLSLLSAVLKSGAKGIKIQRYKGLGEMNPDQLWETTLDRNARSLLQV 775 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 ++ A AD++F++LMGD VEPRREFIQEN+L + +D+ Sbjct: 776 RVEHADTADEMFTKLMGDVVEPRREFIQENALEAEVDV 813 >gi|319639457|ref|ZP_07994207.1| DNA gyrase subunit B [Neisseria mucosa C102] gi|317399352|gb|EFV80023.1| DNA gyrase subunit B [Neisseria mucosa C102] Length = 796 Score = 896 bits (2316), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + ++A L+ L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRAVAE-LSGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 AALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALLAQNID 795 >gi|115350059|ref|YP_771898.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD] gi|115280047|gb|ABI85564.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD] Length = 824 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 392/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQERVLEKVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKTNLHPTIFHANGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E PL+AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPLDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDTELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E + + S++ + A L Sbjct: 598 AISGDALGELARSYLLSKSVIERLSRLYDPAALEAVMDGVAIDL-SNEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K++ + + V+R G V++ + + ++ Sbjct: 657 ALHDDALKNDVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTADT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|78064661|ref|YP_367430.1| DNA gyrase subunit B [Burkholderia sp. 383] gi|77965406|gb|ABB06786.1| DNA gyrase subunit B [Burkholderia sp. 383] Length = 824 Score = 896 bits (2315), Expect = 0.0, Method: Composition-based stats. Identities = 393/828 (47%), Positives = 542/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNPQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P++ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEMVDGVEVSPML 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV ++++ K L + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEFINKTKTNLHPTVFFATGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGENAA 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 VIS + L L +I+ +D +E + V + S++ + A L Sbjct: 598 VISGDALGELARSYLLSKSVIERLSRLYDPAALEAIMDGVVIDL-SNEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 657 ALHDEALKNEVRVVPSYDPVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + +T S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVTDFKSAMKWLLADAERNVSKQRYKGLGEMNPGQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 824 >gi|260774538|ref|ZP_05883451.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14] gi|260610444|gb|EEX35650.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14] Length = 781 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 382/783 (48%), Positives = 522/783 (66%), Gaps = 11/783 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +VSD+GRGIPT+LH Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVSDDGRGIPTELHT 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EE +SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R G I+ + Sbjct: 61 EENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQT 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ PL V G TGT + F PS++ F+ +F+YD L RLRELSFLNS V I Sbjct: 121 YRHGVPQAPLAVVGDTE-RTGTTLRFWPSAETFTNIEFHYDILAKRLRELSFLNSGVSIR 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDG 268 L D+R + Y+GGI AFV++L+R+K P+ R++ S+++AM+WNDG Sbjct: 180 LQDEREADKH-DHFMYEGGIRAFVTHLNRNKTPIHDKVFHFNHDREDGTSVEVAMQWNDG 238 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 + EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+EK SKK K + GDD REG T+ Sbjct: 239 FQENIYCFTNNIPQRDGGTHLAGFRAALTRTLNTYMEKEGYSKKAKTATSGDDAREGLTA 298 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+PDP+FSSQTK+KLVSSEV++ VES + + L+ +L EHP EAK++ K++DA+ Sbjct: 299 VVSVKVPDPKFSSQTKDKLVSSEVKAAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARA 358 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R+AAR+AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQ Sbjct: 359 REAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQ 418 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADV Sbjct: 419 AILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIIIMTDADV 478 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG+HIRTLLLTFF+RQMP LI G++YI +PPLY + +GK QY+KDE+++ Y I +L Sbjct: 479 DGSHIRTLLLTFFYRQMPELIERGYIYIAQPPLYKVKKGKQEQYIKDEDAMTQYQIALAL 538 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--S 626 ++ L + KL++ + + + + Sbjct: 539 DNASLHVNADAPALAGEPLEKLVLQYNAAMKLVERMSRRYPLAMLNEFTYMPRLTEQQCQ 598 Query: 627 DQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSS 681 D + +L +LN + + + + + GV ++L Sbjct: 599 DSSAVEAWTERLVTQLNAKEVGASQYHFAIEHNPELGVYSPKIIVRTHGVTYDYLLSVDL 658 Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + S + ++ + ++ + LD + R+G+++QRYKG Sbjct: 659 LNSKEYNRLADLFDSLDGLLEEGAYIQRGERTQVVSSFTAALDWLIKESRRGLAIQRYKG 718 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P++R +++V I DA AD+LF+ LMGD+VEPRR FI+ N+L Sbjct: 719 LGEMNPDQLWETTMDPESRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIENNALRVAN 778 Query: 801 LDI 803 LD+ Sbjct: 779 LDV 781 >gi|254369714|ref|ZP_04985724.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FSC022] gi|157122673|gb|EDO66802.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FSC022] Length = 803 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 424/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P E+KII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKESKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 594 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYENLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|261364800|ref|ZP_05977683.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996] gi|288566827|gb|EFC88387.1| DNA gyrase, B subunit [Neisseria mucosa ATCC 25996] Length = 796 Score = 895 bits (2314), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I LID+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ N Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDVDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + L+ + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALNILLQNAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|328675722|gb|AEB28397.1| DNA gyrase subunit B [Francisella cf. novicida 3523] Length = 803 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 426/812 (52%), Positives = 550/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS D Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGVEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L D VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLSDGN-VISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------- 653 IK + + + + + ES K+ + N A E+ Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVEKCNQKALSYERFELIQTKDI 651 Query: 654 -HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 S V G ++++ S + + + + + + + Sbjct: 652 GEDSKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|241759142|ref|ZP_04757250.1| DNA gyrase, B subunit [Neisseria flavescens SK114] gi|241320561|gb|EER56838.1| DNA gyrase, B subunit [Neisseria flavescens SK114] Length = 796 Score = 895 bits (2313), Expect = 0.0, Method: Composition-based stats. Identities = 401/803 (49%), Positives = 534/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S + Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGDS-DKKGTTVRFLASVE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGTGIGKEEFNTEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + N ++A L+ L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESANRAVAE-LSGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALLAQNID 795 >gi|240015025|ref|ZP_04721938.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI18] gi|240081614|ref|ZP_04726157.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|240122094|ref|ZP_04735056.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID24-1] gi|240124387|ref|ZP_04737343.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] Length = 871 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 76 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 728 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 847 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870 >gi|296315053|ref|ZP_06864994.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768] gi|296838081|gb|EFH22019.1| DNA gyrase, B subunit [Neisseria polysaccharea ATCC 43768] Length = 796 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 395/803 (49%), Positives = 534/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDVDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 AALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|89256831|ref|YP_514193.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS] gi|115315217|ref|YP_763940.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|167009278|ref|ZP_02274209.1| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica FSC200] gi|290954382|ref|ZP_06559003.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica URFT1] gi|295312203|ref|ZP_06803005.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica URFT1] gi|89144662|emb|CAJ79986.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica LVS] gi|115130116|gb|ABI83303.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 803 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 594 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|161523183|ref|YP_001578195.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|189348956|ref|YP_001944584.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|221201812|ref|ZP_03574849.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M] gi|221207682|ref|ZP_03580690.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2] gi|221214572|ref|ZP_03587542.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1] gi|160340612|gb|ABX13698.1| DNA gyrase, B subunit [Burkholderia multivorans ATCC 17616] gi|189332978|dbj|BAG42048.1| DNA gyrase subunit B [Burkholderia multivorans ATCC 17616] gi|221165462|gb|EED97938.1| DNA gyrase, B subunit [Burkholderia multivorans CGD1] gi|221172528|gb|EEE04967.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2] gi|221178232|gb|EEE10642.1| DNA gyrase, B subunit [Burkholderia multivorans CGD2M] Length = 824 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 392/828 (47%), Positives = 537/828 (64%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P+ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPMQ 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPLY + GK +Y+KD+ L +++ +L L ++ Sbjct: 538 FYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENAT 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L +I+ +D +E + + S + + A L Sbjct: 598 PITGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ K+E + + V+R G V++ + + + Sbjct: 657 ALHDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAKT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 E + + +T + + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FEGLIQAGAVIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|169656699|ref|YP_001429063.2| DNA gyrase subunit B [Francisella tularensis subsp. holarctica FTNF002-00] gi|164551767|gb|ABU62107.2| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 805 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 3 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 120 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 179 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEVFKYDGGIVAFVKYLNNSK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 237 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 297 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 417 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 477 LGCGIGTEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 537 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 596 IKKYTKTYPEKLLRVMAYGAKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 653 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 654 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 714 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 774 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 805 >gi|239997997|ref|ZP_04717921.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|240017473|ref|ZP_04724013.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA6140] gi|240113895|ref|ZP_04728385.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|240116627|ref|ZP_04730689.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|240124740|ref|ZP_04737626.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|240129064|ref|ZP_04741725.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|291042854|ref|ZP_06568595.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|291013288|gb|EFE05254.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|317165439|gb|ADV08980.1| DNA gyrase subunit B [Neisseria gonorrhoeae TCDC-NG08107] Length = 871 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 76 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 728 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 847 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870 >gi|118497199|ref|YP_898249.1| DNA gyrase subunit B [Francisella tularensis subsp. novicida U112] gi|194323498|ref|ZP_03057275.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE] gi|254372564|ref|ZP_04988053.1| hypothetical protein FTCG_00127 [Francisella tularensis subsp. novicida GA99-3549] gi|118423105|gb|ABK89495.1| DNA gyrase subunit B [Francisella novicida U112] gi|151570291|gb|EDN35945.1| hypothetical protein FTCG_00127 [Francisella novicida GA99-3549] gi|194322353|gb|EDX19834.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida FTE] Length = 803 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 424/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657 IK + + + + + ES K+ N A E+ I Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G ++++ S + + + + + + + Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|307296994|ref|ZP_07576810.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1] gi|306877520|gb|EFN08748.1| DNA gyrase, B subunit [Sphingobium chlorophenolicum L-1] Length = 835 Score = 894 bits (2311), Expect = 0.0, Method: Composition-based stats. Identities = 454/840 (54%), Positives = 592/840 (70%), Gaps = 42/840 (5%) Query: 1 MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ QN+ SY ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+ Sbjct: 1 MSEESQNNPNSNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112 L G+ D I +TLN DGS +V DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF + Sbjct: 61 LAGHCDRILITLNPDGSVSVEDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171 +YKVSGGLHGVGVSVVNALS +L L I R+G + M F G PL V G A GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPAGKKGT 180 Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 +VTFLPS++ +F+++ L+HR REL+FLNS V++ L D R E +E+ + Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEVEL 240 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 FY+GGI AFV YLDR+K PLM PI I GSRD+++ID+A+ WND Y+ENVLCFTNNIPQ+ Sbjct: 241 FYEGGIAAFVKYLDRNKTPLMPDPIAISGSRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+ R+ALTR + +Y +KS KK+K S+ G+D REG T+++S+K+PDP+FSSQT Sbjct: 301 DGGTHLAAFRAALTRTLNNYADKSGMLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR +ES + D ++ WLEE+P K+IV+KV+DA+ R+AA++AR+LTRRKG Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPQHGKMIVQKVIDAAAAREAAKKARELTRRKG 420 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 V+DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA Sbjct: 421 VMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I G LYI +PPLY TRG+S Y+K+E +LE+YL++ + + G+ S Sbjct: 540 QMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYLVDNGVESMALE--TTGGMRS 597 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 DLR+ I+ ++ +++ ++ IE I+ + E + + ++ Sbjct: 598 GEDLRHLIEHGRRMRAVMRYVPRRYNPAIIEALAINAALDPELSHDAQAERLANTVKWMD 657 Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 A+ E W G I +R+ RGV + ++E I S ++ + ++Y Sbjct: 658 --AQDDEGRWSGRIAEEGGFHFERLWRGVTDHHMIEAGFIGSAEARKLHAIAAEEADSYR 715 Query: 703 TILSLIC----------NGDKIKITG--------PCSLLDTIFSIGRKGISMQRYKGLGE 744 T L+ D + + P LL+ I + GRKG+++QRYKGLGE Sbjct: 716 TASRLVTAKAAAAAEEAGDDDLPVASKGAVAVTRPSELLEAILASGRKGLAIQRYKGLGE 775 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 MNA QLWETTL+PD RS+LRV++ A AD++F+RLMGD VEPRREFIQ+N+L LD+ Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTRLMGDVVEPRREFIQDNALNVANLDV 835 >gi|325528071|gb|EGD05283.1| DNA gyrase subunit B [Burkholderia sp. TJI49] Length = 824 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 393/828 (47%), Positives = 540/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P+ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVLEKIDGEEVSPMQ 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 + G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 IIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPSKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP ++ G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 FYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSENAV 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E A++ GV S + + A + Sbjct: 598 PISGDALGELARSYLMSQSVIERLGRLYDPAALE-AIMDGVVVDLSSEASTEASAKAMHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ K+E + + V+R G V++ + + + Sbjct: 657 ALHDDTLKNEVRVVPSYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTAKT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 E + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FEGLIQAGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PTVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|134302418|ref|YP_001122388.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|224456719|ref|ZP_03665192.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254370164|ref|ZP_04986170.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254874466|ref|ZP_05247176.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987] gi|134050195|gb|ABO47266.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|151568408|gb|EDN34062.1| DNA topoisomerase [Francisella tularensis subsp. tularensis FSC033] gi|254840465|gb|EET18901.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987] gi|282158808|gb|ADA78199.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis NE061598] Length = 803 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|56707649|ref|YP_169545.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110670120|ref|YP_666677.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis FSC198] gi|56604141|emb|CAG45143.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis SCHU S4] gi|110320453|emb|CAL08526.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis FSC198] Length = 805 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 551/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 3 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS + Sbjct: 120 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 179 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 237 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 297 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 417 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 477 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 537 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 596 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 653 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 654 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 713 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 714 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 773 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 774 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 805 >gi|194099990|ref|YP_002003129.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945] gi|193935280|gb|ACF31104.1| DNA gyrase subunit B [Neisseria gonorrhoeae NCCP11945] Length = 871 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 76 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 728 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 847 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870 >gi|254374023|ref|ZP_04989505.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548] gi|151571743|gb|EDN37397.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548] gi|328676671|gb|AEB27541.1| DNA gyrase subunit B [Francisella cf. novicida Fx1] Length = 803 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS D Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657 IK + + + + + ES K+ N A E+ I Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G ++++ S + + + + + + + Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|240118850|ref|ZP_04732912.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] Length = 871 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 76 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 134 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 135 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 194 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 195 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 253 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 254 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 311 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 312 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 371 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 372 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 431 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 432 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 491 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 492 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 551 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 552 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 611 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 612 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 669 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 670 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 728 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 729 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 787 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 788 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 847 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 848 MGDEVEPRRAFIENNALIAQNID 870 >gi|208778992|ref|ZP_03246338.1| DNA gyrase, B subunit [Francisella novicida FTG] gi|208744792|gb|EDZ91090.1| DNA gyrase, B subunit [Francisella novicida FTG] Length = 803 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 549/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS + TGT +TF PS D Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DKTGTLITFKPSKD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAITRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657 IK + + + + + ES K+ N A E+ I Sbjct: 594 IKKYTKTYPEKLLRVMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 V G ++++ S + + + + + + + Sbjct: 652 GEDGKETISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVTYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|167589703|ref|ZP_02382091.1| DNA gyrase subunit B [Burkholderia ubonensis Bu] Length = 824 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 394/828 (47%), Positives = 539/828 (65%), Gaps = 29/828 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNTQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I V ++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVIIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P+ Sbjct: 121 SYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVIETVDGVEVSPMQ 180 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 + G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 LIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 237 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV ++++ K L + + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 238 DDFAFAGGVKGFVEFINKTKSTLHPTIFHVNGEKDGVGVEVAMQWNDSYNENVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FS Sbjct: 298 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 418 RKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 538 LYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDSELNAHMLRLALQGSELVPGENAT 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L +I+ +D +E AV+ GV S +E + A L Sbjct: 598 AISGDALGELARSYLMSQSVIERLSRLYDPAALE-AVMDGVVIDLSSEESTEASAKALHA 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L+ A K+E + + V+R G V++ + + +N Sbjct: 657 ALHDEALKNEVRVVPSYDAVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTANT 716 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 717 FKGLIGEGAVIKRGERSMAVGDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 776 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 PAVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|82701138|ref|YP_410704.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196] gi|82409203|gb|ABB73312.1| DNA gyrase subunit B [Nitrosospira multiformis ATCC 25196] Length = 810 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 406/804 (50%), Positives = 547/804 (68%), Gaps = 7/804 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L GY D Sbjct: 11 KSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R+G I+++ F G+ PL TG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I LID+R+ + T + GG+++FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +D I+++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYAAGEKDRIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I GK +YVKD+ L+ YL+ +L+E + K ++ L N ++ L + + Sbjct: 548 LYKIKHGKQERYVKDDHELKQYLLGLALTEAELHTGEGKSPLTGETLENIANEYLLAEAV 607 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D + + + S++E+ A +LA ++N + + Sbjct: 608 IERMSSLIDSEVMHALLRHSDIDL-SNEELATESAVRLAAQVNAPNITIVPKYDVATEEY 666 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + + R+ G ++ + S R + ++ + K ++ Sbjct: 667 RLKISRMHHGNVRYSYIDQDFLQSGDYAQIRQTAEVLDGLIGPAAYVQRGEKKQAVSDFK 726 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + +KGI QRYKGLGEMN +QLWETT++P R LLR +I D+ AD++F+ L Sbjct: 727 QALDWLLEEVKKGIGTQRYKGLGEMNPAQLWETTMDPKVRLLLRAQIEDSIAADEIFTTL 786 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPRR FI+ N+L LD+ Sbjct: 787 MGDIVEPRRAFIENNALGVRNLDV 810 >gi|330806661|ref|YP_004351123.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374769|gb|AEA66119.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 792 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 396/793 (49%), Positives = 533/793 (67%), Gaps = 11/793 (1%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ D I++ ++ D S TV Sbjct: 2 LKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVR 61 Query: 78 DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137 DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L L Sbjct: 62 DNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEQLVL 121 Query: 138 RIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLR 197 ++R G I+E ++I+G+ P+ + G + TGT++ F SS+ F F++D L R+R Sbjct: 122 TVRRSGKIWEQTYIHGVPQAPMAIVGDSE-STGTQIHFKASSETFKNIHFSWDILAKRIR 180 Query: 198 ELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257 ELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K P+ Q D I Sbjct: 181 ELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNQVFHFNVQREDGI 238 Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317 +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + +Y+E+ +KK K + Sbjct: 239 GVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVAT 298 Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377 GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + S +L E+P EAK+ Sbjct: 299 TGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKL 358 Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437 +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+DP SEL+LVEGDSAGG Sbjct: 359 VVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGG 418 Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497 SAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRY Sbjct: 419 SAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRY 478 Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557 H IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PPLY + +GK QY+KD++ Sbjct: 479 HNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDD 538 Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617 ++E+Y+ +L + + IS L ++D + K +K + + E + Sbjct: 539 AMEEYMTQSALEDASLHLNEDAPGISGEALERLVNDFRLVMKTLKRLSRLYPQELTEHFI 598 Query: 618 ISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARG 670 + E D ++ RL + + K+ N V+ I+ G Sbjct: 599 YLPAVSLEQLSDYAAMQDWLAQYEVRLRTVEKSGLVYKASLREDRERNVWLPEVELISHG 658 Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 + S K ++ + K +T L+ + + Sbjct: 659 LSNYVTFNRDFFGSNDYKTVVSLGAQLSTLLDEGAYIQRGERKKAVTEFKEALEWLMAES 718 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K ++QRYKGLGEMN QLWETT++P +R +L+V I DA AD +F+ LMGD VEPRR+ Sbjct: 719 TKRHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIGADQIFNTLMGDAVEPRRD 778 Query: 791 FIQENSLPS-ALD 802 FI+ N+L LD Sbjct: 779 FIESNALAVSNLD 791 >gi|300021544|ref|YP_003754155.1| DNA gyrase subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299523365|gb|ADJ21834.1| DNA gyrase, B subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 815 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 449/806 (55%), Positives = 573/806 (71%), Gaps = 9/806 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DN IDE L G+A Sbjct: 11 EPDDYGADSIKMLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNGIDEVLAGHAKSCE 70 Query: 66 VTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 VTLN DGSCTV D+GRGIPT + ++ SAAE++ T LHAGGKF+Q SYKVSGGLH Sbjct: 71 VTLNPDGSCTVRDDGRGIPTGIKRDDDQDPKRSAAEIVFTELHAGGKFDQNSYKVSGGLH 130 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSSWLK RI R+G + + F NG PL V G A + GTEV+FLPS++ Sbjct: 131 GVGVSVVNALSSWLKCRIWRDGKEHFVEFNNGNTVAPLKVVGDANGERGTEVSFLPSTET 190 Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F +F++ TL+HRLREL+FLNS +I L D R + + Y+GG AFV YLDR K Sbjct: 191 FHNVTEFDFATLEHRLRELAFLNSGAKIVLTDARHADVKRQEFVYEGGTAAFVRYLDRSK 250 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + PI I G +D I+++ A+ WND YHE VLCFTNNIPQ+DGGTHL+G RSALTR + Sbjct: 251 SSALPDPIMILGEKDGITVEAALWWNDTYHETVLCFTNNIPQRDGGTHLAGFRSALTRIV 310 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y E++ +KK+K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV+ VVES V Sbjct: 311 NKYAEETGLAKKEKVSLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVKPVVESAV 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L AW EEHP EAK+IV K+++A++ R+AAR+ARDLTRRKG LD LPG LA+C +R Sbjct: 371 GDQLGAWFEEHPKEAKVIVGKIVEAALAREAARKARDLTRRKGALDGLRLPGGLAECQDR 430 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K+E+F+VEGDSAGGSAKQGR RE QA+LP+RGKILNVERAR DKMLSS+++ +I A Sbjct: 431 DASKTEVFIVEGDSAGGSAKQGRKREFQAVLPIRGKILNVERARTDKMLSSEQVTNIIAA 490 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D F ++KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PP Sbjct: 491 LGTGIGRDEFKLDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELVDKGHVYIAQPP 550 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK+ Y+KDE +LEDYLI+Q L + + S + DLR+ ++ A +I Sbjct: 551 LYKVARGKAQSYLKDERALEDYLIDQGLVDAVL-VTGSGTERAGRDLRDIVEQARQISGG 609 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSIN 658 I + +++ +EQ I G+FN Q + A+++A RL+ ++E+ E W G Sbjct: 610 INGLHSRYNRNVVEQGAIGGIFNPAYLQSATEANAAAARVAKRLDDVSEEMETGWEGRFG 669 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 N + KR RGV E L+ + + S ++ + E Y L + G Sbjct: 670 NDGFVFKREVRGVTEVHFLDRALLGSLDARRLNERHAHLVEVYDKPAKLKRKDKVEAVLG 729 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P SLL ++ GRKGI +QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++AD++F+ Sbjct: 730 PRSLLTAVYETGRKGIELQRYKGLGEMNPEQLWETTLDPDVRTLLQVKVGDLAEADEIFA 789 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD VEPRREFIQEN+L LD+ Sbjct: 790 KLMGDVVEPRREFIQENALNVSNLDV 815 >gi|261378453|ref|ZP_05983026.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685] gi|269145238|gb|EEZ71656.1| DNA gyrase, B subunit [Neisseria cinerea ATCC 14685] Length = 796 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 533/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSNWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + V+ DL + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLESAAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I D ++ + + + S + ++A+ L+ L+ E+ G N Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSADSTDRAIAN-LSALLDEKEVVLER-VEGHEGNR 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ +L + + Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAALKGLVAAGSTLFKGETEYPVGSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 EALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|118602063|ref|YP_903278.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567002|gb|ABL01807.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 802 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 409/804 (50%), Positives = 560/804 (69%), Gaps = 7/804 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Q+ Y A SI+ILKGLDAV+KRP MYIGDTD +GLHHMI+EV+DNAIDE+L G+ Sbjct: 1 MSEK-QSQEYQASSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNAIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +TL+ D S +V+DNGRGIP D+H +EGISAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CSKINITLHEDLSISVNDNGRGIPVDIHPKEGISAAEVIMTMLHAGGKFDDNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS W++L + R G IY + G+ + P+ V G + + TGT + F P+ D Sbjct: 120 HGVGISVVNALSEWVELTVYRNGKIYFQHYNIGVPNEPIKVIGKS-DKTGTTIHFKPNVD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS+ +F YD L +R+RELSFLN V I + + + + YKGGI+ FV YL++ K Sbjct: 179 IFSITEFKYDILVNRIRELSFLNLGVHIQVKELSTGKK--DFFKYKGGIKEFVRYLNKAK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + I I RD+I I++A++W+D Y EN+ CFTNNIPQK GG HL+G R ALTR Sbjct: 237 NPIFNNIITINAQRDDIEINVALQWSDSYQENIYCFTNNIPQKYGGGHLAGFRGALTRTF 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+ S +KK+K S+ G+D REG T+++SIK+P+P+FSSQTK+KLVSSEVR+ VES + Sbjct: 297 NNYINNSSIAKKEKISITGEDTREGLTAIISIKIPNPKFSSQTKDKLVSSEVRAPVESAL 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ LS +L E+P+EAKII++K+LDAS R+AAR+AR++ RRKG+L+IA LPGKL+DC + Sbjct: 357 NEKLSDYLLENPIEAKIIIRKILDASHARNAARKAREIIRRKGMLNIADLPGKLSDCQTK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP KSE+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ RF+K+LSS E+GTLITA Sbjct: 417 DPTKSEIFLVEGDSAGGSAKQGRDRHTQAILPLKGKILNVEKVRFEKILSSIEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ +DI KLRYHKI+IMTDADVDGAHIRTLLLTFF+R +P LI NG+LYI +PP Sbjct: 477 LGCGIGKEEYDITKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENGYLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK Y+KD + L DYL+ +++++ IS L + + + KI+ + Sbjct: 537 LYKIKKGKQECYLKDNQELNDYLLQEAINDAYFFLSKETPAISGMALESLVKEYYKINTI 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHGSINN 659 I Y ++ ++ S + ++Q+ + + L +LN ++K + + Sbjct: 597 IDKLYKRYNLALLKVIASSTPIDDLTNQKNMNTWCANLTEKLNKDITPAQKHIVTFNAIS 656 Query: 660 SDILVKRIARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +++ GV + L + S + + FS +IE + ++K+ Sbjct: 657 NEVEHTLCVYGVNTEHKTLNAAFFSSLDYQAIKDFSKKIESMITQESYIEKKNKQVKVDR 716 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 ++D + +KG S QRYKGLGEMN QLWETT++P+ R+LL+VKI D+ A+++FS Sbjct: 717 FSHVVDFLIKDAKKGQSFQRYKGLGEMNPEQLWETTMDPEQRTLLKVKIEDSIVANEVFS 776 Query: 779 RLMGDEVEPRREFIQENSLPS-AL 801 LMGD+VEPRR FI+ N+L L Sbjct: 777 TLMGDKVEPRRNFIENNALLVDNL 800 >gi|187932024|ref|YP_001892009.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712933|gb|ACD31230.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 803 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 425/812 (52%), Positives = 552/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L GY Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDSSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL GS ++TGT +TF PS + Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVGST-DETGTLITFKPSKE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LIDK + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDKIN--NRSEIFKYDGGIVAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NNYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKII +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIICEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPALSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L +YL N L + VIS L N+ + K K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAEYLGNIGLEGACIYLS-NGNVISGQVLANYYELYQKSQKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK------SWH 654 IK + + + + + ES K+ N A E+ Sbjct: 594 IKKYTKTYPEKLLRIMAYGTKYVDESAD--ISEWWQKIVENCNQKALAYERFKLIETKDI 651 Query: 655 GSINNSDIL--VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 G +I V G ++++ S + + + + + + + Sbjct: 652 GEDGKENISYGVNHYINGYDTDYIVKSSFFSTKDYEDLVAYGDVLSDISFEGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + RKG +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARKGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|329118645|ref|ZP_08247349.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria bacilliformis ATCC BAA-1200] gi|327465380|gb|EGF11661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria bacilliformis ATCC BAA-1200] Length = 796 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 397/803 (49%), Positives = 530/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MAEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +VSDNGRG+PT +H +EGISAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKINVTIHADNSVSVSDNGRGMPTGIHPKEGISAAEVIMTILHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + FI G + PL V G + + GT V FL S + Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFIRGASEKPLAVVGDS-DKKGTTVRFLASEE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NRALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I L + Sbjct: 537 LYKAKYGKQERYLKDEFEKDQWLLGLALEKAKIV--SDGRTIEGELFAAAAKQFLLAKSV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D ++ + + + + ++A L+ L+ E+ GS Sbjct: 595 IEQESRVIDDLVLKAMLYAAPIDLSGEDSTAQAIAE-LSALLDEKEVALEQ-VEGSEGGH 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ + L ++ I+ Sbjct: 653 FIKITRKLHGNVMVSYIEPKFLNSKAYQTITQTAAALKGLVGSNAKLYKGDNEYDISSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L+ + +KG+++QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 DALEILLQTAQKGMAIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|302877248|ref|YP_003845812.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2] gi|302580037|gb|ADL54048.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2] Length = 792 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 392/797 (49%), Positives = 529/797 (66%), Gaps = 7/797 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S YD+ SI++LKGL+AV+KRP MYIGDT+ +GLHHM++E +DNA+DE+L G+ + I V Sbjct: 2 SEYDSTSIKVLKGLEAVRKRPGMYIGDTNDGTGLHHMVFEAVDNAVDEALAGHCNEINVI 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S +VSDNGRGIPTD+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 62 IHADNSISVSDNGRGIPTDIHKEEGRSAAEVIMTILHAGGKFDSNSYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WLKL I REG + M F +G PL V G + GT V FL + + F + +F Sbjct: 122 VNALSEWLKLTIYREGKEHFMEFRHGDPVAPLKVIGESKKK-GTVVHFLAAKETFGLIEF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++D L RLRELSFLN+ V+I+LID R+ + + GGI+ FV Y++R+K L + Sbjct: 181 HFDILAKRLRELSFLNNGVKIALIDHRNGKE--ENFSFTGGIKGFVDYMNRNKTALHPTV 238 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 G +D ++ ++AM+WND Y E+V CFTNNIPQ+DGGTHL+ +R+A+TR + +Y+E Sbjct: 239 FHAIGEKDGMTAEIAMQWNDTYQESVQCFTNNIPQRDGGTHLTAMRAAMTRTLNNYIEAE 298 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK K GDD REG T+VLS+K+PDP+FSSQTK+KLVSSEVR V+E + +SA+ Sbjct: 299 QLAKKAKVEPTGDDMREGLTAVLSVKLPDPKFSSQTKDKLVSSEVRPVIEELIGQQMSAF 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L E P +AKIIV K+++A+ R+AAR+ARDLTRRKGVLD LPGKLADC E+DP SEL Sbjct: 359 LLERPNDAKIIVGKIIEAARAREAARKARDLTRRKGVLDGMGLPGKLADCQEKDPALSEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 +LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+K++SSQEI TLIT LGTGIG+ Sbjct: 419 YLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKLISSQEIATLITVLGTGIGK 478 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G +YI +PPLY I +G Sbjct: 479 DEYNADKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKQG 538 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 + +Y+KD+ ++ YL+ +L + I L + +I Sbjct: 539 REERYLKDDLEMKSYLLGNALKDASLYSALDAAPIQGETLEQIAKQYFLAEAVIDRLTHF 598 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667 +I + + E S + I E G + + ++++ Sbjct: 599 IAPEASHALLILPTLSLDDATEAQKSAQLLESASGGVIKVTVEDDEQGEL---RLRLEKL 655 Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727 G L+ + K R ++ ++ + K + ++ + Sbjct: 656 YYGNYSISFLDKDFLQGGDYKQIRQTADALDGLMSPTAYVTRGEQKRGVASFKQAIEWLL 715 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 ++G+S+QRYKGLGEMN QLWETT+ R LL+V+I D AD++F+ LMGD VEP Sbjct: 716 EEAKRGLSIQRYKGLGEMNPEQLWETTMFVKNRILLKVRIEDTIAADEVFTTLMGDLVEP 775 Query: 788 RREFIQENSLPS-ALDI 803 RR FI++N+L + LD+ Sbjct: 776 RRAFIEKNALGAKNLDV 792 >gi|294668663|ref|ZP_06733759.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309425|gb|EFE50668.1| DNA gyrase, B subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 796 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 535/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTDQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADNSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLRVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I LID+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELIDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ N Sbjct: 595 IEQESRFVDELVLRAMLHASPVDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGNRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGERAKLYKGENEYDVDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + L+ + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALNILLQTAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|296105501|ref|YP_003617201.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Legionella pneumophila 2300/99 Alcoy] gi|295647402|gb|ADG23249.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Legionella pneumophila 2300/99 Alcoy] gi|307608754|emb|CBW98136.1| DNA gyrase, subunit B [Legionella pneumophila 130b] Length = 779 Score = 893 bits (2307), Expect = 0.0, Method: Composition-based stats. Identities = 392/782 (50%), Positives = 527/782 (67%), Gaps = 11/782 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DN+IDESL GY I VT++ D S TV D+GRGIP D+HK Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNSIDESLAGYCKEIFVTIHSDESITVKDDGRGIPVDIHK 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L L ++R G +YE Sbjct: 61 EEGKSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLLVRRHGKVYEQH 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ ++P+ TG + N TGT++ F PS++ FS +F+YD L RLRELS+LNS V I Sbjct: 121 YRHGVPESPIAETGES-NSTGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIH 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R+ + T Y+GGI+AFV +L+++K P+ + +D I I+LAM+WNDGY Sbjct: 180 LFDERTQKK--DTFHYEGGIKAFVEHLNKNKTPVHPVVFSMTSEKDGIVIELAMQWNDGY 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 E + CFTNNIPQ+DGGTH++G R+ALTR + +Y+E +KK K S GDD REG T+V Sbjct: 238 QETIFCFTNNIPQRDGGTHMAGFRAALTRTLNNYIENEGYAKKAKVSPTGDDAREGLTAV 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEV+ VES V + + +L E+P AK IV K++DA+ R Sbjct: 298 LSVKVPDPKFSSQTKDKLVSSEVKPAVESCVAEKFNDFLLENPTAAKSIVAKIIDAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AARRAR++TRRKG LDIA LPGKLADC E+DP SEL+LVEGDSAGGSAKQ R R+ QA Sbjct: 358 EAARRAREMTRRKGALDIAGLPGKLADCQEKDPSLSELYLVEGDSAGGSAKQARDRKFQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG + +D +K+RYH+IIIMTDADVD Sbjct: 418 ILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPEEYDPDKVRYHRIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTFF+RQ L+ G++YI +PPLY + RGK QYVKD+E+L DYL +L Sbjct: 478 GSHIRTLLLTFFYRQTRELLERGYIYIAQPPLYKVKRGKQEQYVKDDEALFDYLTQCALD 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 IS L + +++K+IK + + +++ + + E Sbjct: 538 GATFYPAKEAPPISAKSLEELVQHFRRVEKIIKRYKRRYPSDILKRVAYMPMLHQEDFNN 597 Query: 630 IN--VSLASKLANRLNFIAEKSEKSWHG-----SINNSDILVKRIARGVQEQFVLEGSSI 682 ++ S +L L + K+E+ N + G++ ++ Sbjct: 598 LSKIESWCRQLHLSLQQVDSKTEQYKVDIQKLTEGNQYTPKITVYQHGLENDIPMQVEFF 657 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742 S K +++ + + + +L+ + +KG ++QRYKGL Sbjct: 658 LSKDYKEMVDLGHKLSNLIEEGAYIQRGDKSLPVENFEQVLNWLMDEAKKGQTIQRYKGL 717 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN QLWETT++P+ R +L+V I DA AD++F+ LMGD VEPRR+FI+ N+L + + Sbjct: 718 GEMNPEQLWETTMDPEVRRMLQVSIEDAVAADEIFTTLMGDNVEPRRDFIETNALDAENI 777 Query: 802 DI 803 DI Sbjct: 778 DI 779 >gi|261391746|emb|CAX49196.1| DNA gyrase subunit B [Neisseria meningitidis 8013] Length = 796 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 397/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|326386061|ref|ZP_08207685.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370] gi|326209286|gb|EGD60079.1| DNA gyrase subunit B [Novosphingobium nitrogenifigens DSM 19370] Length = 840 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 448/845 (53%), Positives = 581/845 (68%), Gaps = 47/845 (5%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+ +SY ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L Sbjct: 1 MATGDITPNANSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKS 113 G+ D++ + +N DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF + + Sbjct: 61 AGHCDLVLIEINPDGSVSVEDNGRGIPTDIHSEEGVSAAEVIMTQLHAGGKFENTSDDNA 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----ND 168 YKVSGGLHGVGVSVVNALS WL+L I REG + M F +G PL+V G A Sbjct: 121 YKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWMRFAHGDPVAPLIVRGEAPIVGGKPK 180 Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GT VTF S + F ++++D L+HR REL+FLNS V+I L DKR E +E ++Y+G Sbjct: 181 KGTRVTFFASHETFKNVTEYDFDKLEHRYRELAFLNSGVRILLRDKRREEVKEHDLYYEG 240 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 GI AFV YLDR+K PL+ PI I RD I ID+A++WND Y+ENVLCFTNNIPQ+DGGT Sbjct: 241 GIGAFVKYLDRNKLPLIPDPIAISADRDGIGIDVALQWNDSYYENVLCFTNNIPQRDGGT 300 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 HL+ R+ALTR I Y E+S KK+K ++ GDD REG T+++S+K+PDP+FSSQTK+KL Sbjct: 301 HLAAFRAALTRTINGYAERSGLLKKEKVALSGDDMREGLTAIVSVKLPDPKFSSQTKDKL 360 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 VSSEVR +ES + D ++ WLEE+P A+ +++KV+DA+ R+AAR+AR+LTRRKG +DI Sbjct: 361 VSSEVRQPLESLMADKMNEWLEENPAHARSVIQKVIDAAAAREAARKARELTRRKGAMDI 420 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKLADC ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+ Sbjct: 421 ASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDR 480 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 ++SS+E+GTLI A+GTGI +D F+++KLRYHKI+IMTDADVDGAHIRTLLLTFF RQ+P Sbjct: 481 IISSKEVGTLIQAMGTGI-RDEFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQLPE 539 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 ++ G L+I +PPLY + +G+S Y+KD +L++YL+ LS + S G +DL Sbjct: 540 IVKQGHLFIAQPPLYKVAKGRSEVYLKDNAALDNYLVEAGLSGRVLE--SSGGARMGSDL 597 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 R +D ALK+ L+ ++ + IE ++G + E D + ++ A LN Sbjct: 598 RALVDHALKLRDLMAFVPRRYNPSIIEALALAGALDPELDTPGREAALARTAEWLNRG-- 655 Query: 648 KSEKSWH-GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 E W G ++R+ RGV + V+EG + S ++ + + Y Sbjct: 656 DPEARWSAGIAAEGGYHIQRLWRGVTDHHVIEGGFLVSQEARKLARLAAENADVYAGTAR 715 Query: 707 L-------------------------ICNGDKIK--ITGPCSLLDTIFSIGRKGISMQRY 739 L GD IT P L++ +F+ GRKG+S+QRY Sbjct: 716 LARAGSAPAEPVETTPAAEEEETAPATRRGDSSAEIITRPSQLVEAVFATGRKGLSIQRY 775 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETTL+PD R LL+VKI DA D++ +RLMGD VEPRREFIQEN+L Sbjct: 776 KGLGEMNAEQLWETTLDPDNRLLLQVKIEDADVTDEILTRLMGDVVEPRREFIQENALNV 835 Query: 800 -ALDI 803 LD+ Sbjct: 836 ANLDV 840 >gi|209515895|ref|ZP_03264757.1| DNA gyrase, B subunit [Burkholderia sp. H160] gi|209503743|gb|EEA03737.1| DNA gyrase, B subunit [Burkholderia sp. H160] Length = 823 Score = 892 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 390/825 (47%), Positives = 544/825 (65%), Gaps = 27/825 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ ++SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L G+ Sbjct: 4 MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 + I V ++ D S +++DNGRG+PT D H + SAAE++MT LHAGGKF+Q SYK Sbjct: 64 CNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQNSYK 122 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163 VSGGLHGVGVS VNALS+WL+L ++R+G + M F G+ +P+ V G Sbjct: 123 VSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEVNGVTTSPMQVIG 182 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 + GTEV F+ IF +++YD L R+RELSFLN+ V+I L+D+RS + Sbjct: 183 DTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE--EDF 239 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 + GG++ FV Y++++K L + I G +D + +++AM+WND Y+ENVLCFTNNIPQ+ Sbjct: 240 AFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQR 299 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FSSQT Sbjct: 300 DGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQT 359 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TRRKG Sbjct: 360 KDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKAREMTRRKG 419 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 VLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A Sbjct: 420 VLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 479 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R Sbjct: 480 RYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 539 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I G++YI +PPLY I GK +Y+KDE + +++ +L + + I+ Sbjct: 540 QMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQGSELVASEGATPIT 599 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 + L L ++ +D +E AV+ GV S ++ + A L +L Sbjct: 600 GDALGELARSYLLAQAVVDRLSRLYDAGALE-AVMDGVAVDLSSEQAAEASARALEAKLR 658 Query: 644 FIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 A K + + + + V R G Q+ VL+ + + +N + Sbjct: 659 DDALKPDVTVTTMYDPVRELRSLRVARTHHGNQKISVLDEEFQLTADYQQLVNTANTFKG 718 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + + +T S + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 719 LIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQV 778 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 779 RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|325202956|gb|ADY98410.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240149] gi|325207246|gb|ADZ02698.1| DNA gyrase, B subunit [Neisseria meningitidis NZ-05/33] Length = 796 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 398/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|325143186|gb|EGC65528.1| DNA gyrase, B subunit [Neisseria meningitidis 961-5945] gi|325197495|gb|ADY92951.1| DNA gyrase, B subunit [Neisseria meningitidis G2136] Length = 796 Score = 891 bits (2303), Expect = 0.0, Method: Composition-based stats. Identities = 396/803 (49%), Positives = 533/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L+ L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LSGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|325205300|gb|ADZ00753.1| DNA gyrase, B subunit [Neisseria meningitidis M04-240196] Length = 796 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 395/803 (49%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|87201322|ref|YP_498579.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444] gi|87137003|gb|ABD27745.1| DNA gyrase subunit B [Novosphingobium aromaticivorans DSM 12444] Length = 835 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 449/834 (53%), Positives = 583/834 (69%), Gaps = 38/834 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +SY ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L G+ D Sbjct: 7 NTPNTNSYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSG 118 ++ + LN DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF + +YKVSG Sbjct: 67 LVLIELNPDGSVSVEDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 126 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLP 177 GLHGVGVSVVNALS WL+L I R+G + M F +G + PLVV G A GT VTF Sbjct: 127 GLHGVGVSVVNALSEWLELTIWRDGKEHWMRFAHGDAEGPLVVRGPAPEGKKGTRVTFQA 186 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 S + F +F++D L+HR REL+FLNS V+I L DKR E +E +FY+GGI AFV YL Sbjct: 187 SHETFKNVLEFDFDKLEHRYRELAFLNSGVRILLRDKRHEEIKEHDLFYEGGIAAFVKYL 246 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR+K+PLM P+ I +RD I ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+ R+AL Sbjct: 247 DRNKQPLMPEPVAISANRDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAAL 306 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y E+S KK+K S+ GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR + Sbjct: 307 TRTLNGYAERSGMLKKEKVSLTGDDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQPL 366 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + D + WLEE+P AK I++KV+DA+ R+AA+RAR+LTRRKG +DIASLPGKLAD Sbjct: 367 ESLMADKMVEWLEENPGHAKSIIQKVIDAAAAREAAKRARELTRRKGAMDIASLPGKLAD 426 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+++SS+E+GT Sbjct: 427 CQERDPAKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRIISSKEVGT 486 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP +I G L+I Sbjct: 487 LIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIIKAGHLFI 545 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G+S Y+KD +++ YL+ LS + S G S DL ++ AL+ Sbjct: 546 AQPPLYKVAKGRSEVYLKDNAAMDRYLVEAGLSGRVLE--TSGGARSGTDLEALVEHALR 603 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + L+ ++ IE ++G + E + + A+ LN +E W + Sbjct: 604 MRNLMAFVPRRYNPAIIEALALAGALEPDMTVEARDAALLRAADWLNRG--DTEARWTVT 661 Query: 657 I-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC------ 709 + V+R+ RGV + ++E + S ++ + E Y + L+ Sbjct: 662 LAEEGGYHVQRMWRGVTDHHMIEAGFLVSAEARKLAKLAAENAEVYAGMARLVRATAAAS 721 Query: 710 ----------NGD---------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 +G+ K IT P LL+ +F+ GRKG+S+QRYKGLGEMNA QL Sbjct: 722 EADAAPAADDDGEVPAAPTVQHKDAITRPSELLEMVFAGGRKGLSIQRYKGLGEMNAEQL 781 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETTL+PD RSLL+VK+ DA D++F+RLMGD VEPRR+FIQEN+L LD+ Sbjct: 782 WETTLDPDNRSLLQVKVEDADVTDEIFTRLMGDVVEPRRDFIQENALNVANLDV 835 >gi|30248034|ref|NP_840104.1| DNA gyrase subunit B [Nitrosomonas europaea ATCC 19718] gi|30179919|emb|CAD83914.1| DNA gyrase, subunit B:DNA topoisomerase II gyrB [Nitrosomonas europaea ATCC 19718] Length = 809 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 407/807 (50%), Positives = 539/807 (66%), Gaps = 11/807 (1%) Query: 2 SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 + NS Y++DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G Sbjct: 9 AKKTDNSHRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117 Y D I+V ++ D S ++ DNGRGIPTD+ + E SAAE++MT LHAGGKF+ SYKVS Sbjct: 69 YCDDISVIIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVS 128 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+L I+R GN+Y+M F G+ PL VTG GTEV FL Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIRRNGNVYQMEFREGVAVAPLKVTGQTE-KHGTEVHFLA 187 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S +F ++YD RLRELSFLN ++I L D+R + RE + GGI FV Y++ Sbjct: 188 SQSVFGDITYHYDIFAKRLRELSFLNHGIKIRLADQR--DDREEVFAFTGGIRNFVEYIN 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K L S +G +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T Sbjct: 246 RSKTVLHPSIFYAKGLKDNITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + +Y+EK+ +KK K GDD REG T VLS+K+ +P+FSSQTKEKLVSSEVR VE Sbjct: 306 RTLNNYIEKNELAKKAKVDTTGDDMREGITCVLSVKLFEPKFSSQTKEKLVSSEVRPAVE 365 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V LS +L E+P EAK I K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC Sbjct: 366 EIVVQKLSDFLLENPNEAKTICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DPK EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK +Y+KD+ L+ Y++ +L + I+ L D+ L Sbjct: 546 QPPLYKIKHGKQERYLKDDYELKHYILGLALVGAELHTGANNPPITGEALARIADEYLLA 605 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + +I+ D+T + + + S + A++LA L+ + +E + + Sbjct: 606 ETVIERMSRLIDRTVMYALLKQPDIDL-SSETSARDSAARLAILLDDVEILAE--YDENF 662 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + + R G L+ + S R + + + +I + Sbjct: 663 ERYRLKIIRKQHGNLRTSYLDDDFLQSGDFARIRQAAQILHGLIGEGAKVKRGEQEISVR 722 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +KGI++QRYKGLGEMN QLWETT++P R LLR +I D+ D++F Sbjct: 723 EFKEALEWLLEETKKGITIQRYKGLGEMNPEQLWETTMDPGNRRLLRAQIEDSILTDEIF 782 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD VEPRR FI+ N+L + +DI Sbjct: 783 TTLMGDVVEPRRAFIESNALRARNIDI 809 >gi|295675104|ref|YP_003603628.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002] gi|295434947|gb|ADG14117.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1002] Length = 823 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 389/825 (47%), Positives = 544/825 (65%), Gaps = 27/825 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ ++SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L G+ Sbjct: 4 MNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGH 63 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 + I V ++ D S +++DNGRG+PT D H + SAAE++MT LHAGGKF+Q SYK Sbjct: 64 CNDIQVIIHADNSVSITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQNSYK 122 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163 VSGGLHGVGVS VNALS+WL+L ++R+G + M F G+ +P+ V G Sbjct: 123 VSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVVTSPMPVIG 182 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 + GTEV F+ IF +++YD L R+RELSFLN+ V+I L+D+RS + Sbjct: 183 DTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE--EDF 239 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 + GG++ FV Y++++K L + I G +D + +++AM+WND Y+ENVLCFTNNIPQ+ Sbjct: 240 AFVGGVKGFVEYINKNKSVLHPNIFHIMGEKDGVGVEVAMQWNDSYNENVLCFTNNIPQR 299 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FSSQT Sbjct: 300 DGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQT 359 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TRRKG Sbjct: 360 KDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVDAARARDAARKAREMTRRKG 419 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 VLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+A Sbjct: 420 VLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA 479 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R Sbjct: 480 RYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 539 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I G++YI +PPLY I GK +Y+KDE + +++ +L + + I+ Sbjct: 540 QMPEMIERGYIYIAQPPLYKIKAGKDERYLKDESEVNAHILRLALQGSELVASEGATPIT 599 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 + L L ++ +D +E AV+ GV S ++ + A L +L Sbjct: 600 GDALGELARSYLLAQAVVDRLSRLYDAGALE-AVMDGVAVDLSSEQAAEASARALEAKLR 658 Query: 644 FIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 A K + + + + V R G Q+ V++ + + +N + Sbjct: 659 DDALKPDVTVSTMYDPVRELRSLRVARTHHGNQKISVIDEEFQLTADYQQLVNTANTFKG 718 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + + +T S + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 719 LIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNMSKQRYKGLGEMNPEQLWETTMDPQV 778 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 779 RRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|46200851|ref|ZP_00207872.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Magnetospirillum magnetotacticum MS-1] Length = 816 Score = 890 bits (2301), Expect = 0.0, Method: Composition-based stats. Identities = 438/800 (54%), Positives = 563/800 (70%), Gaps = 6/800 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A SIQ+L+GL+AV+KRP MYIGDTD SGLH MIYE +DNA+DE + G+ D V Sbjct: 19 EEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVV 78 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS V+DNGRGIP D+H EEGISAAEV +T+LHAGGKF Q S ++S GLHGVG+SV Sbjct: 79 LNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISV 138 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL+LRI R G + M F +G + PL V G G TGT+V F PS FS +F Sbjct: 139 VNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGTRTGTQVVFFPSKGTFSHTEF 198 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++DT++HRLREL+FLN ++L D+R E RE + Y+GG++AFV +LDR K+ L Sbjct: 199 DFDTVEHRLRELAFLNWRATLTLKDERHAETREAVLHYEGGVQAFVQWLDRSKEALHAPI 258 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + + RD + ++L+M W D YHE LCFTNN+PQKDGGTHL+G R+ALTR + +Y S Sbjct: 259 L-VAAERDVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTVNAYANDS 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K ++ GDD REG T VLSIKMPDP+FSSQ KEKLVSSEVR +VE+ V + L+ W Sbjct: 318 GIAKKEKVNLAGDDMREGLTCVLSIKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEW 377 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EA+ IV KV++A+ R+AAR+AR+LTRRKGVLDIA+LPGKLADC ERDP SEL Sbjct: 378 FEEHPSEARKIVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSEL 437 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIGTLI A+GTGIG+ Sbjct: 438 FIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGR 497 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + F+++K RYHKIIIMTDADVDG+HIRTLLLTFF+RQMP+LI G+LYI +PPLY RG Sbjct: 498 EDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRG 557 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 +S Y+KD+ +LE+YLI+ L++ + D V S DLR ++ A + L+ Sbjct: 558 QSEVYLKDDRALEEYLIDGGLADAVLRMADGTQVAS-IDLRALVEQARSVRNLLTPLTRR 616 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664 +EQA I+ + + ++A LA RL+ + E+ W G+ + Sbjct: 617 LPLKLVEQAAIADALDSTVLTDATRGPAIAEALAKRLDALETHLERGWTGTWVEGDGYSF 676 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 R RGV E L+ + I S ++ + R+ E + +L + ++GP +L+ Sbjct: 677 SRTLRGVTETHHLDSAVIRSAEARRLHELAPRLRETFDRPAALQVKERETVLSGPVALVT 736 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GR+GI++QRYKGLGEMN QLWETTL+P RSLL+VK+ A A+ +FS LMGD Sbjct: 737 AVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQVFSTLMGDV 796 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRREFIQ N+L LD+ Sbjct: 797 VEPRREFIQTNALKVSNLDV 816 >gi|325129012|gb|EGC51862.1| DNA gyrase, B subunit [Neisseria meningitidis N1568] Length = 796 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 396/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + V+ DL + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLESAAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I D ++ + + + S + ++A+ L+ L+ E+ G N Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSADSTDRAIAN-LSALLDEKEVVLER-VEGHEGNR 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ +L + + Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTATVLKGLVAAGSTLFKGETEYPVGSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 EALDILLQNVQKGMSIQRYKGLGEMNPEQLWETTMDPSVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|294010033|ref|YP_003543493.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] gi|292673363|dbj|BAI94881.1| DNA gyrase subunit B [Sphingobium japonicum UT26S] Length = 835 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 454/840 (54%), Positives = 593/840 (70%), Gaps = 42/840 (5%) Query: 1 MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ QN+ +Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+ Sbjct: 1 MSEESQNNPNSNAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112 L G+ D I +TLN DGS +V DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF + Sbjct: 61 LAGHCDRILITLNPDGSVSVEDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171 +YKVSGGLHGVGVSVVNALS +L L I R+G + M F G PL V G A GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEYLDLNIWRDGKEHYMRFAYGDAVAPLKVIGDAPEGKKGT 180 Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 +VTFLPS++ +F+++ L+HR REL+FLNS V++ L D R E +EI + Sbjct: 181 KVTFLPSTEKVPGDGGTFKNHTEFDFEKLEHRYRELAFLNSGVRLFLADARHEEKKEIEL 240 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 FY+GGI AFV +LDR+K+PLM PI I GSRD+++ID+A+ WND Y+ENVLCFTNNIPQ+ Sbjct: 241 FYEGGIAAFVKWLDRNKQPLMPDPIAISGSRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+ R+ALTR + +Y +KS KK+K S+ G+D REG T+++S+K+PDP+FSSQT Sbjct: 301 DGGTHLAAFRAALTRTLNNYADKSGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR +ES + D ++ WLEE+P ++IV+KV+DA+ R+AA++AR+LTRRKG Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPQHGRMIVQKVIDAAAAREAAKKARELTRRKG 420 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 V+DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA Sbjct: 421 VMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I G LYI +PPLY TRG+S Y+K+E +LE+YL++ + + G+ S Sbjct: 540 QMPQIIEAGHLYIAQPPLYKATRGRSEVYLKNEAALENYLVDNGVESMALE--TTGGMRS 597 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 DLR+ I+ +I +++ ++ IE I+G + E + + ++ Sbjct: 598 GEDLRSLIEHGRRIRAVMRYVPRRYNPAIIEALAINGALDPELSHDAQAERLANTVRWMD 657 Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 A+ E W G I +R+ RGV + ++E I S ++ + ++Y Sbjct: 658 --AQDDEGRWSGRIAEEGGFHFERLWRGVTDHHMIEAGFIGSAEARKLHAIAAEEADSYR 715 Query: 703 TILSLICN------------------GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 T L+ +T P LL+ I + GRKG+++QRYKGLGE Sbjct: 716 TSSRLVTAKAAAAAEEAGEDELPVATKGSATVTRPSELLEAILTAGRKGLAIQRYKGLGE 775 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 MNA QLWETTL+PD RS+LRV++ A AD++F+RLMGD VEPRREFIQ+N+L LD+ Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADVADEIFTRLMGDVVEPRREFIQDNALNVANLDV 835 >gi|268597708|ref|ZP_06131875.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|268683013|ref|ZP_06149875.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] gi|268551496|gb|EEZ46515.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA19] gi|268623297|gb|EEZ55697.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID332] Length = 796 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|59802091|ref|YP_208803.1| DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090] gi|254494648|ref|ZP_05107819.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291] gi|260439612|ref|ZP_05793428.1| DNA gyrase subunit B [Neisseria gonorrhoeae DGI2] gi|268593849|ref|ZP_06128016.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|268599958|ref|ZP_06134125.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|268602293|ref|ZP_06136460.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|268683318|ref|ZP_06150180.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|268687441|ref|ZP_06154303.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|293398129|ref|ZP_06642334.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62] gi|59718986|gb|AAW90391.1| putative DNA gyrase subunit B [Neisseria gonorrhoeae FA 1090] gi|226513688|gb|EEH63033.1| DNA gyrase subunit B [Neisseria gonorrhoeae 1291] gi|268547238|gb|EEZ42656.1| DNA gyrase subunit B [Neisseria gonorrhoeae 35/02] gi|268584089|gb|EEZ48765.1| DNA gyrase subunit B [Neisseria gonorrhoeae MS11] gi|268586424|gb|EEZ51100.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID18] gi|268623602|gb|EEZ56002.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-92-679] gi|268627725|gb|EEZ60125.1| DNA gyrase subunit B [Neisseria gonorrhoeae SK-93-1035] gi|291611392|gb|EFF40462.1| DNA gyrase, B subunit [Neisseria gonorrhoeae F62] Length = 796 Score = 889 bits (2298), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|254420618|ref|ZP_05034342.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3] gi|196186795|gb|EDX81771.1| DNA gyrase, B subunit [Brevundimonas sp. BAL3] Length = 808 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 452/812 (55%), Positives = 581/812 (71%), Gaps = 13/812 (1%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+D I Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G Sbjct: 1 MTDPIAEMPEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD++ V LN DGS TV+DNGRGIPT +H+ EG+SAAEVIMT+LHAGGKF+Q SYKVSGG Sbjct: 61 HADLVQVILNADGSVTVTDNGRGIPTGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTE 172 LHGVGVSVVNALS WL+L+I R+G ++M F G LV+TG A +GTE Sbjct: 121 LHGVGVSVVNALSDWLELKIYRDGKAHQMRFERGDTVKSLVITGDAPIREDTGKPLSGTE 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 VTF PS FS DF+ TL+HRLREL+FLNS V I L D+RS EP E + Y+GG+EAF Sbjct: 181 VTFYPSVTTFSHIDFDLKTLEHRLRELAFLNSGVVIKLADQRSAEPTETILHYEGGVEAF 240 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +LD+ K P+++ I I+G ++ I +DLA+ WND YHE +LCFTNNIPQ+DGGTHLS Sbjct: 241 VRHLDKSKAPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R++LTR + Y+E S KK+K SV G+D REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RASLTRVMGGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 360 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VE+ ++GL+ W EEHP+EAK +V K+++A+ R+AAR+ARDLTRRK L+I+SLPG Sbjct: 361 RPAVEALCSEGLAQWFEEHPVEAKQVVAKIIEAASAREAARKARDLTRRKSALEISSLPG 420 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP KSELF+VEGDSAGGSAKQ R+RENQA+LPLRGKILNVERARFD+MLSS Sbjct: 421 KLADCQERDPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSD 480 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 IGTLI ALGTGIG+D F+ +KLRYHKII+M DADVDGAHIRTLLLTFF+RQMP LI G Sbjct: 481 LIGTLILALGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELITRG 540 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY +++GK +Y+KD+ ++ YLI + SE + + DL+ + Sbjct: 541 HVYIAQPPLYKVSKGKQSRYLKDQAEMDAYLIEEGSSEAELDLSTGERRL-GLDLQALVR 599 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +A + IEQA ++G+F +D + A A RLN AE+ + + Sbjct: 600 EAKAFKGGVDRLSQRAPAFAIEQAALAGLFAENADMTQASAAA---AVRLNLYAEEGDGN 656 Query: 653 WHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 W G+ ++ R R VQE VLE + + S ++ + + + + Sbjct: 657 WTGAPGEQGAVVFTRTRRAVQETIVLEETLLRSLDARRLAERAAAFDGVFSAPATYRRKD 716 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 I GP LL+ + G+KG+++QRYKGLGEMN QLWETTL+ + R+LL+V + Sbjct: 717 KSTTIRGPLDLLNAVLDAGKKGLAIQRYKGLGEMNPEQLWETTLDSNARTLLQVSVEHEE 776 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 A+DLF++LMGD VEPRREFIQEN+L +A+D+ Sbjct: 777 DANDLFAKLMGDVVEPRREFIQENALDAAVDV 808 >gi|167560988|ref|ZP_02353904.1| DNA gyrase subunit B [Burkholderia oklahomensis EO147] gi|167568252|ref|ZP_02361126.1| DNA gyrase subunit B [Burkholderia oklahomensis C6786] Length = 823 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 384/826 (46%), Positives = 537/826 (65%), Gaps = 26/826 (3%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQHNSQPENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 GY + I VT++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGYCNDIHVTIHADNSISVTDNGRGIPTDVKLNDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F GI +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGIAQNRAIETRDGIDVSPMQV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 181 VGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRIRELSFLNNGVRIRLTDLRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFVGGVKGFVEYINKTKTVLHPTIFHINGEKDGVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIIDNEIAKKAKIETSGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPGDAKIICGKIVEAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + G+ +Y+KD+ L+ +++ +L + ++ Sbjct: 538 YRQMPEMIERGYVYIAQPPLYKVKAGRDERYLKDDTELDAHMLRLALQGSELVPTENGTP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 IS + L L ++K +D +E + + ++ S + A Sbjct: 598 ISGDALGELARSYLLAQGVVKRLSRLYDPAALEAIMDGVAIDLSNEASTEASAKALAAAL 657 Query: 642 LNFIAEKSEK---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 + + + ++ + ++R G VL+ + + ++ + Sbjct: 658 SDDATKTEVRVVPTYDPVREVRSLRIERTHHGNVRVSVLDEEFQLTADYQQLVNTAHTFK 717 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + ++ + + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 718 GLIGAGAMIKRGERSSNVSDFKNAMKWLMTDAERNMSKQRYKGLGEMNPEQLWETTMDPA 777 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 778 VRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIENNALRAGNIDV 823 >gi|225023722|ref|ZP_03712914.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC 23834] gi|224943604|gb|EEG24813.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC 23834] Length = 799 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 396/805 (49%), Positives = 527/805 (65%), Gaps = 10/805 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Q Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQTQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV++N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDSITVSINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179 HGVGVSVVNALS WLKL I REG + + F G PL + GT V F+ S Sbjct: 120 HGVGVSVVNALSDWLKLTIWREGKEHFVEFRRGETVAPLKAVADCPADKHGTRVQFMASE 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + F + ++TL R+RELSFLN+ V+I L DKR + GG+ FV Y Sbjct: 180 ETFGEVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVAGFVRYTTGG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKPL G RD ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR+A+TR Sbjct: 238 KKPLHDKIFYTLGERDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRAAMTRT 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E + +KK K GDD REG VLS+K+PDP+FSSQTK+KLVSSE+ VV Sbjct: 298 INQYIEANEIAKKAKVDTSGDDMREGLVCVLSVKLPDPKFSSQTKDKLVSSEIAPVVNEV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +LEE+P +AKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E Sbjct: 358 LSQALHEFLEENPQDAKIICSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQE 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLIT Sbjct: 418 KDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLIT 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +P Sbjct: 478 ALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY GK +Y+KD+ +++L+ ++ + + + +L L+ Sbjct: 538 PLYKAKYGKQERYLKDDTEKDEFLLGLAVDKAKIV--SGGRTLEGAELERAAKQFLRARS 595 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 I+ D + + + + ES + + ++A+ + L E + + G Sbjct: 596 TIEHESRIIDGLVLRALLDTAPISLESAESTDTAIAAL--SSLLAKEEVALERLDGHEGG 653 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITG 718 I + R G L+ I S + + +++ L + + Sbjct: 654 HFIKITRQLHGNVMVSYLDQKFIDSKAYQTISRTAEQLQGLVEPGALLHKGEAEPQTVNS 713 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +D + + +KG+++QRYKGLGEMNA QLWETT++P+ R LL+V+I DA AD +F Sbjct: 714 FEQSIDILLAGAQKGMAIQRYKGLGEMNAEQLWETTMDPEVRRLLKVRIEDAIAADKVFV 773 Query: 779 RLMGDEVEPRREFIQENSLPS-ALD 802 LMGDEVEPRREFI+ N+L + +D Sbjct: 774 TLMGDEVEPRREFIETNALIAQNID 798 >gi|186474776|ref|YP_001856246.1| DNA gyrase subunit B [Burkholderia phymatum STM815] gi|184191235|gb|ACC69200.1| DNA gyrase, B subunit [Burkholderia phymatum STM815] Length = 823 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 389/827 (47%), Positives = 541/827 (65%), Gaps = 28/827 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTDTNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 G+ D I V ++ D S +V+DNGRGIPT + + SAAE++MT LHAGGKF+Q S Sbjct: 61 AGHCDDIQVIIHADNSISVTDNGRGIPTGIKRDDKHDPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVV 161 YKVSGGLHGVGVS VNALSSWL+L ++R+G + M F G++ +P+ V Sbjct: 121 YKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKHFMEFHRGVVQNRVIEQVDGESLSPIPV 180 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D+RS + Sbjct: 181 VGETE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLTDQRSGKE--D 237 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 + GG++ FV Y+++ K L + I G ++ + +++AM+WND Y+ENVLCFTNNIP Sbjct: 238 DFAFVGGVKGFVEYINKTKSVLHPTIFHIVGEKEGVGVEVAMQWNDSYNENVLCFTNNIP 297 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+ +KK K GDD REG + VLS+K+P+P+FSS Sbjct: 298 QRDGGTHLTGLRAAMTRVINKYIADHEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSS 357 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TRR Sbjct: 358 QTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMTRR 417 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE Sbjct: 418 KGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVE 477 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTFF Sbjct: 478 KARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTFF 537 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 +RQMP +I G++YI +PPLY + GK +Y+KD L +++ +L+ + + Sbjct: 538 YRQMPEMIERGYIYIAQPPLYKVKAGKDERYLKDTAELNAHMLRLALNGSELVAAEGATP 597 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 I+ + L L ++ +D+ + AV+ GV S ++ + A L + Sbjct: 598 IAGDALGELARSYLLAQAVVDRLSRLYDEAAL-GAVMDGVSIDLSSEQSTEASARALEAK 656 Query: 642 LNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 L K E + + + V+R G + V++ + + +N Sbjct: 657 LRDDPLKPEINVFAMYDPVRELRSLRVERRHHGNVKVSVIDEEFQLTADYQQLVNTANTF 716 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757 + + + + S + + + + +S QRYKGLGEMN QLWETT++P Sbjct: 717 KGLIGEGAVIKRGERSMAVGDFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDP 776 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 777 NVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 823 >gi|94496546|ref|ZP_01303122.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58] gi|94423906|gb|EAT08931.1| DNA gyrase, B subunit [Sphingomonas sp. SKA58] Length = 835 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 454/840 (54%), Positives = 585/840 (69%), Gaps = 42/840 (5%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+ Sbjct: 1 MSEEPLNSSNKNDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112 L G+ D I +TLN DGS +V DNGRGIPT +HKEEG+SAAEVIMT+LHAGGKF + Sbjct: 61 LAGHCDRIVITLNPDGSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGT 171 +YKVSGGLHGVGVSVVNALS WL L I R+G + M F G PL V G A GT Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLDLNIWRDGKEHYMRFAYGDATAPLKVIGDAPEGKKGT 180 Query: 172 EVTFLPSSDIFS--------VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 VTFL S++ D+++D L+HR REL+FLNS V++ L+D R E +E+ + Sbjct: 181 RVTFLASTEKAPGDGGTFKNQTDYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVEL 240 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 FY+GGI AFV YLDR+K LM PI I G+RD+++ID+A+ WND Y+ENVLCFTNNIPQ+ Sbjct: 241 FYEGGIAAFVKYLDRNKNALMPDPIAIAGTRDDVTIDVALEWNDSYYENVLCFTNNIPQR 300 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+ R+ALTR + +Y EKS KK+K S+ G+D REG T+++S+K+PDP+FSSQT Sbjct: 301 DGGTHLAAFRAALTRTLNNYAEKSGALKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQT 360 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR +ES + D ++ WLEE+P K+IV+KV+DA+ R+AA++AR+LTRRKG Sbjct: 361 KDKLVSSEVRQPLESLMADKMAEWLEENPAHGKMIVQKVIDAAAAREAAKKARELTRRKG 420 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 +DIASLPGKLADC ERDP KSELFLVEGDSAGGSAKQGR+R NQAILPL+GKILNVERA Sbjct: 421 AMDIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERA 480 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RFD+MLSS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R Sbjct: 481 RFDRMLSSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYR 539 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I G LYI +PPLY +RG+S Y+K+E +LE YL++ + + G Sbjct: 540 QMPQIIEAGHLYIAQPPLYKASRGRSEVYLKNEAALEQYLVDNGVETMVLE--TGGGARG 597 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 +DLR I+ ++ +++ ++ IE I+G + E +E + L Sbjct: 598 GDDLRGLIEHGRRMRAVMRYVPRRYNPQIIEALSINGALDPELSKESQAERLAATVTWLG 657 Query: 644 FIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 A SE W G I +R+ RGV + ++EG I S ++ ++ +Y Sbjct: 658 --AHDSEGRWSGRIAQEGGFHFERLWRGVTDHHMIEGGFIGSAEARKLHTIASEEAASYQ 715 Query: 703 TILSLIC----------NGDKIK--------ITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 +I L+ D + IT P LL+ I + GRKG+S+QRYKGLGE Sbjct: 716 SISRLVSAKAAQAAEDAGEDDLPAAPAKGATITSPSDLLEAILAAGRKGLSIQRYKGLGE 775 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 MNA QLWETTL+PD RS+LRV++ A AD++FS+LMGD VE RREFIQ+N+L LD+ Sbjct: 776 MNAEQLWETTLDPDNRSMLRVEVEQADIADEIFSQLMGDVVESRREFIQDNALNVANLDV 835 >gi|296157627|ref|ZP_06840462.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1] gi|295892399|gb|EFG72182.1| DNA gyrase, B subunit [Burkholderia sp. Ch1-1] Length = 823 Score = 889 bits (2297), Expect = 0.0, Method: Composition-based stats. Identities = 390/828 (47%), Positives = 540/828 (65%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 G+ + I V ++ D S +++DNGRG+PT D H + SAAE++MT LHAGGKF+Q Sbjct: 61 AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALS+WL+L I+R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV FL IF +++YD L R+RELSFLN+ V+I L D+R+ + Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y++++K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 +QTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPL+ I GK +Y+KDE + +++ +L L + Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELLASEGAT 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L ++ +D +E + + S +E + A L Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALEAVMDGIAIDL-SSEEAADASAKALEA 655 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 +L K E + + V R G Q+ VL+ + + +N Sbjct: 656 KLRDDPLKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + T + + +T S + + + + IS QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|268604557|ref|ZP_06138724.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] gi|268588688|gb|EEZ53364.1| DNA gyrase subunit B [Neisseria gonorrhoeae PID1] Length = 796 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|161870850|ref|YP_001600023.1| DNA gyrase subunit B [Neisseria meningitidis 053442] gi|161596403|gb|ABX74063.1| DNA gyrase subunit B [Neisseria meningitidis 053442] Length = 814 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 392/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 19 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 77 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 78 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 137 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 138 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 196 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 197 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 254 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 255 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 314 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 315 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 374 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 375 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 434 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 435 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 494 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 495 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 554 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 555 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 613 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 671 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 672 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 730 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 731 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 790 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 791 MGDEVEPRRAFIENNALIAQNID 813 >gi|83309738|ref|YP_420002.1| DNA gyrase subunit B [Magnetospirillum magneticum AMB-1] gi|82944579|dbj|BAE49443.1| Type IIA topoisomerase [Magnetospirillum magneticum AMB-1] Length = 816 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 435/800 (54%), Positives = 565/800 (70%), Gaps = 6/800 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A SIQ+L+GL+AV+KRP MYIGDTD SGLH MIYE +DNA+DE + G+ D V Sbjct: 19 EEYGAGSIQVLRGLEAVRKRPGMYIGDTDDGSGLHRMIYEAVDNAVDEIMNGFGDRCDVV 78 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS V+DNGRGIP D+H EEGISAAEV +T+LHAGGKF Q S ++S GLHGVG+SV Sbjct: 79 LNADGSVLVTDNGRGIPVDIHPEEGISAAEVALTKLHAGGKFEQNSNRISSGLHGVGISV 138 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL+LRI R G + M F +G + PL V G G+ TGT+V FLPS FS DF Sbjct: 139 VNALSEWLELRIWRHGKEHFMRFRHGEPEAPLAVVGECGDRTGTQVVFLPSKGTFSHTDF 198 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++DT++HRLREL+FLNS + + D+R E RE + Y+GG++AFV +LDR K+ L Sbjct: 199 DFDTVEHRLRELAFLNSRATLLIKDERHAETREALLHYEGGVQAFVQWLDRSKEALHAPI 258 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I +D + ++L+M W D YHE LCFTNN+PQKDGGTHL+G R+ALTR I +Y S Sbjct: 259 L-IAAEKDVVRLELSMEWTDSYHETCLCFTNNVPQKDGGTHLAGFRAALTRTINAYANDS 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK+K ++ GDD REG T VLS+KMPDP+FSSQ KEKLVSSEVR +VE+ V + L+ W Sbjct: 318 GIAKKEKVNLAGDDMREGLTCVLSVKMPDPKFSSQAKEKLVSSEVRPLVENLVGEKLAEW 377 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP EA+ +V KV++A+ R+AAR+AR+LTRRKGVLDIA+LPGKLADC ERDP SEL Sbjct: 378 FEEHPAEARKVVTKVVEAAAAREAARKARELTRRKGVLDIATLPGKLADCQERDPALSEL 437 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIGTLI A+GTGIG+ Sbjct: 438 FIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIGTLIAAMGTGIGR 497 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + F+++K RYHKIIIMTDADVDG+HIRTLLLTFF+RQMP+LI G+LYI +PPLY RG Sbjct: 498 EDFNVDKARYHKIIIMTDADVDGSHIRTLLLTFFYRQMPALIERGYLYIAQPPLYRAKRG 557 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 +S Y+KD+ +LE+YLI+ L++ + D ++ DLR ++ A + L+ Sbjct: 558 QSEVYLKDDRALEEYLIDGGLADAVLRMAD-GTQLASIDLRALVEQARSVRNLLTPLSRR 616 Query: 608 HDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEKSWHGS-INNSDILV 664 +EQA I+ + + ++ LA RL+ + E+ W G+ + Sbjct: 617 VPLKLVEQAAIADALDSSLLTDAVRGPAIVQGLAQRLDALETHLERGWTGTWVEGDGYTF 676 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 R RGV E L+ + I S ++ + R+ E + +L+ + ++GP +L+ Sbjct: 677 SRTLRGVTETHALDSAVIRSAEARRLHELAPRLRETFDRPAALMVRERETVLSGPVALVT 736 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + GR+GI++QRYKGLGEMN QLWETTL+P RSLL+VK+ A A+ +FS LMGD Sbjct: 737 AVMEQGRRGIAIQRYKGLGEMNPEQLWETTLDPQARSLLQVKVAQADDAEQVFSTLMGDV 796 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR+FIQ N+L LD+ Sbjct: 797 VEPRRDFIQTNALKVSNLDV 816 >gi|325135020|gb|EGC57648.1| DNA gyrase, B subunit [Neisseria meningitidis M13399] Length = 796 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 395/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I ++L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGSELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L L+ E+ + Sbjct: 595 IEQESRIIDELVLHAMLHASPVDLSTAESADRSVAE-LNGLLDEKEVALERIEGHEGHQF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ L ++ I Sbjct: 654 -IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGKGAKLYKGDNEYDIDSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 GALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|187922038|ref|YP_001893680.1| DNA gyrase subunit B [Burkholderia phytofirmans PsJN] gi|187713232|gb|ACD14456.1| DNA gyrase, B subunit [Burkholderia phytofirmans PsJN] Length = 823 Score = 888 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 389/828 (46%), Positives = 539/828 (65%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 G+ + I V ++ D S +++DNGRG+PT D H + SAAE++MT LHAGGKF+Q Sbjct: 61 AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALS+WL+L I+R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV FL IF +++YD L R+RELSFLN+ V+I L D+R+ + Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y++++K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 +QTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPL+ I GK +Y+KDE + +++ +L + Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELSASEGST 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L ++ +D +E + + S +E + A L Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALEAIMDGIAIDL-SSEEAADASAKALEA 655 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 +L K E + + V R G Q+ VL+ + + +N Sbjct: 656 KLRDDPLKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + T + + +T S + + + + IS QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|254670128|emb|CBA05114.1| DNA gyrase subunit B [Neisseria meningitidis alpha153] Length = 796 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 395/803 (49%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|83945027|ref|ZP_00957393.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633] gi|83851809|gb|EAP89664.1| DNA gyrase subunit B [Oceanicaulis alexandrii HTCC2633] Length = 800 Score = 888 bits (2294), Expect = 0.0, Method: Composition-based stats. Identities = 445/805 (55%), Positives = 555/805 (68%), Gaps = 9/805 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N Y A+SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L G+ Sbjct: 1 MSE-TPNQEYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 +TV L+ DGS +V+D+GRGIPT +H EEG+SAA+VIMT+LHAGGKF+Q SYKVSGGL Sbjct: 60 CSQVTVCLHADGSASVTDDGRGIPTQIHAEEGVSAAQVIMTQLHAGGKFDQNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN--PLVVTGSAGNDTGTEVTFLPS 178 HGVGVSVVNALS WL L I R G + M F G +N L G A GT+V F+PS Sbjct: 120 HGVGVSVVNALSDWLDLTIWRNGREHTMRFRRGDPENGQDLREVGDANGKKGTQVRFMPS 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + FS F L HRLREL+FLNS V+I L D+R EP E + Y+GG+ AFV +LDR Sbjct: 180 EETFSDIVFERARLLHRLRELAFLNSGVKIVLRDEREAEPFEEVLEYEGGVAAFVQHLDR 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K P+ P+ I G R+ ++++ A+ WND YHENVLCFTNNIPQ+DGGTHL+G R ALTR Sbjct: 240 TKTPIFPDPVLITGEREGVTVEAALEWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTR 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y S + K K S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VES Sbjct: 300 VINQYAGNSGIAAKSKVSITGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVES 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D L+ W EEHP+EAK IV K+++A+ R+AAR+AR+LTRRK LDI SLPGKLADC Sbjct: 360 AVYDTLTEWFEEHPVEAKQIVSKIVEAAAAREAARKARELTRRKSALDITSLPGKLADCQ 419 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++DP KSELF+VEGDSAGGSAKQGR RENQA+LPLRGKILNVERARFDKMLSS ++GTLI Sbjct: 420 QKDPAKSELFIVEGDSAGGSAKQGRHRENQAVLPLRGKILNVERARFDKMLSSDQVGTLI 479 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D D +KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQMP LI G LYI + Sbjct: 480 TALGTGIGRDQIDYDKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMPELIERGHLYIAQ 539 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + RGKS +Y+ D+ ++ +LI + SE + + I+ DL + A I Sbjct: 540 PPLYKVMRGKSERYLTDQSEMDAFLIEEGSSEAVLELA-NGETITGQDLAERVKAARGIA 598 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI- 657 + K A+ + + A RL A++ E W G + Sbjct: 599 LSLDRLSARAPKF----ALEAAALEGALHPDATQDQVDAAARRLAAQADEGEDGWVGQVL 654 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I+ KR RGV E L+ + S +K + I +Y + +I Sbjct: 655 PEGGIVFKREVRGVVESITLDDKILASPDAKRLSERAWAIRGDYQGPAWFRRKSEDTEIF 714 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 P +L+ + + G KG+ +QRYKGLGEMN QLWETTL+P+ RSLLRV +T+A AD+LF Sbjct: 715 SPNALVSAVQAAGAKGLKIQRYKGLGEMNPDQLWETTLDPEARSLLRVSVTEADTADELF 774 Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802 S+LMGD VEPRR+FIQE +L + +D Sbjct: 775 SKLMGDVVEPRRDFIQEFALEAEVD 799 >gi|332970301|gb|EGK09293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella kingae ATCC 23330] Length = 806 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 403/815 (49%), Positives = 531/815 (65%), Gaps = 21/815 (2%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ Q+ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE Sbjct: 1 MTEQAQSQQTPQQEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+ SYK Sbjct: 61 ALAGHCDNITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVT 174 VSGGLHGVGVSVVNALS WLKL I R+G + + F G PL V G N GT V Sbjct: 121 VSGGLHGVGVSVVNALSDWLKLTIWRDGKEHFVEFHRGETVEPLKVVGDCDPNKHGTRVQ 180 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL S + F + + ++TL R+RELSFLN+ V+I L DKR + GG+ FV Sbjct: 181 FLASEETFGLVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVVGFVQ 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y KKPL G +D ++++ AM+WN+ Y E+V CFTNNIPQ+DGGTHL+ LR Sbjct: 239 YTTGSKKPLHDKVFYAIGEKDGMTVECAMQWNESYQESVQCFTNNIPQRDGGTHLTALRQ 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 +TR I +Y++K+ +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ Sbjct: 299 VMTRTINNYIDKNEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIAP 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VV ++ L +LEE+P +AKII K+++A+ R+AAR+AR++TRRKGV+D LPGKL Sbjct: 359 VVNEVLSQALFEFLEENPNDAKIICGKIVEAARAREAARKAREMTRRKGVMDGLGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+ Sbjct: 419 ADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEV 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 TLITALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI G++ Sbjct: 479 ATLITALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYV 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLY GK +Y+KDE+ +++L+ ++ + + V+ +L Sbjct: 539 YIAQPPLYKAKHGKQERYLKDEQEKDEFLLGLAVDKAKIV--SGSRVLEGAELLRVAKQF 596 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 L+ I + I+ AV+ + + E + + LN + EK E + Sbjct: 597 LRAKNTIAEESR-----VIDSAVLRALIDIEPIDFTTENSVQAAISALNVVLEKQEIALE 651 Query: 655 GSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LIC 709 + N I + R G L+ + S + + + + + Sbjct: 652 HVVGNEGGHFIKITRQLHGNMAISYLDQKFVDSKAYQILLKTAQQQRDLIDASGADLFKG 711 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 G+ +T LD + +KG+ +QRYKGLGEMN QLWETT+NP+ R LL+V+I D Sbjct: 712 EGEAQHVTSFEQALDILLQNAQKGMMIQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIED 771 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A AD+ F LMGDEVEPRR FI+ N+L + +DI Sbjct: 772 AIAADETFVTLMGDEVEPRRNFIEANALIAQNIDI 806 >gi|325203331|gb|ADY98784.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240355] Length = 796 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLHAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|254805746|ref|YP_003083967.1| DNA gyrase subunit B [Neisseria meningitidis alpha14] gi|254669288|emb|CBA08244.1| DNA gyrase subunit B [Neisseria meningitidis alpha14] Length = 796 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|119896295|ref|YP_931508.1| DNA gyrase subunit B [Azoarcus sp. BH72] gi|119668708|emb|CAL92621.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72] Length = 829 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 391/834 (46%), Positives = 526/834 (63%), Gaps = 36/834 (4%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE Sbjct: 1 MSEPQNTPAPSGNDYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFN 110 +L G+ D I +T++ D S +V+DNGRGIP D H E SAAE++M LHAGGKFN Sbjct: 61 ALAGHCDDIVITIHADNSISVTDNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKFN 119 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158 Q SYKVSGGLHGVGVS VNALS WL+L I+R+G + M F G +P Sbjct: 120 QNSYKVSGGLHGVGVSCVNALSKWLRLTIRRDGKKHFMEFHRGAPQDRVIDVVDGVEVSP 179 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 L V G GTEV +L +IF +++Y+ L RLRELSFLN+ V+I L+D+R+ + Sbjct: 180 LKVLGETS-KRGTEVHYLADEEIFGTVEYHYEILAKRLRELSFLNNGVKIRLVDQRTGKE 238 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS--------RDNISIDLAMRWNDGYH 270 + GG+ FV Y++R K L S G+ +S+++AM+WND Y Sbjct: 239 --EDFAFAGGVRGFVEYINRTKAVLHPSVFYAAGTTRIPTGAGEAELSVEVAMQWNDSYA 296 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E VLC+TNNIPQ DGGTHL+GLR+A+TR I Y+E++ +KK K + GDD REG VL Sbjct: 297 EQVLCYTNNIPQADGGTHLTGLRTAMTRVINKYIEENEIAKKAKVDITGDDMREGLACVL 356 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+KMPDP+F+SQTK KLVSSE R VE V L+ +L E+P++AK I K+++A+ RD Sbjct: 357 SVKMPDPKFASQTKMKLVSSEARPAVEEVVAAKLTDFLLENPIDAKTICNKIVEAARARD 416 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR++TRRKGVLD LPGKLADC E+DP SEL+LVEGDSAGGSAKQGR R+ QAI Sbjct: 417 AARKAREMTRRKGVLDGVGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAI 476 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPL+GKILNVE+ARFDK+L SQEI TLITALGT IG+D + KLRYH+II+MTDADVDG Sbjct: 477 LPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVDG 536 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHIRTLLLTFF+RQMP L+ G +YI +PPLY I GK+ Y+KD+ L +L+ +L Sbjct: 537 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLALDG 596 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630 + + + I+ + L L + +IK D ++ + + D+ Sbjct: 597 AVLVPREGADAITDDALGGLARSYLLAEAVIKRLASYIDPEVLQAMLAHDLEISLDDEAA 656 Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690 + A ++ L + +H + ++R+ G + +E + + S + Sbjct: 657 ARASADRIQPHL-PEGLRIYAEYHEETEAWRLTIERLHHGNLKFGWVETAFLVSGDYRSI 715 Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 R + I + + +T + + + +G+S QRYKGLGEMN QL Sbjct: 716 RTAAASIAGLIGPGAEIRRGEKRQTVTRFADAITWLLAEVERGLSKQRYKGLGEMNPEQL 775 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT++P R LLRV+I DA AD++F+ LMGD VEPRR FI+ N+L + +D+ Sbjct: 776 WETTMDPAVRRLLRVQIDDAIAADEIFTTLMGDNVEPRRAFIESNALYAQNIDV 829 >gi|325145282|gb|EGC67560.1| DNA gyrase, B subunit [Neisseria meningitidis M01-240013] Length = 796 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|218767099|ref|YP_002341611.1| DNA gyrase subunit B [Neisseria meningitidis Z2491] gi|121051107|emb|CAM07377.1| DNA gyrase subunit B [Neisseria meningitidis Z2491] Length = 796 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|170694067|ref|ZP_02885223.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M] gi|170141139|gb|EDT09311.1| DNA gyrase, B subunit [Burkholderia graminis C4D1M] Length = 823 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 391/828 (47%), Positives = 539/828 (65%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 GY + I V ++ D S +++DNGRG+PT D H E SAAE++MT LHAGGKF+Q Sbjct: 61 AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALS+WL+L I+R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRVIEEIDGVAVSPIQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D+R+ + Sbjct: 180 VVGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLTDQRTGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 DDFAFVGGVKGFVEYINKTKSVLHPTIFHVSGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 +QTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICGKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPL+ I GK +Y+KDE + +++ +L L ++ Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDESEVNAHILKLALQGSELLASENAT 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L ++ +D +E AV+ GV S + + A L Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALE-AVMDGVVIDLSSEAAAETSAKALEA 655 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 +L A K E + + V R G Q+ V + + + +N Sbjct: 656 KLRDDALKPEVRVTTMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + +T S + + + + IS QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGAGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|325141053|gb|EGC63556.1| DNA gyrase, B subunit [Neisseria meningitidis CU385] Length = 796 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|15676138|ref|NP_273269.1| DNA gyrase subunit B [Neisseria meningitidis MC58] gi|7225433|gb|AAF40668.1| DNA gyrase subunit B [Neisseria meningitidis MC58] gi|316985132|gb|EFV64084.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76] gi|325199420|gb|ADY94875.1| DNA gyrase, B subunit [Neisseria meningitidis H44/76] Length = 796 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 392/803 (48%), Positives = 532/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPNEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ TLITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVATLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|329847542|ref|ZP_08262570.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19] gi|328842605|gb|EGF92174.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19] Length = 823 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 450/818 (55%), Positives = 570/818 (69%), Gaps = 26/818 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D S Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE L G+A Sbjct: 13 DANGQSEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEVLAGHAT 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V LN+DGSCTV+D+GRGIP D+H+ EG+SAAEVIMT LHAGGKF+Q SYKVSGGLHG Sbjct: 73 RVEVILNVDGSCTVTDDGRGIPVDIHEGEGVSAAEVIMTELHAGGKFDQNSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDTGTEVTFL 176 VGVSVVNALS +L L I R+G + + F G PL V G A + TGTEVTF Sbjct: 133 VGVSVVNALSDYLDLVIYRQGKKHSVRFERGATVKPLEVIGEAPKRDDGRDYTGTEVTFF 192 Query: 177 PSSD-----------IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 PS FS DF+ TL+HRLREL+FLNS V I D R EP E + Y Sbjct: 193 PSMAKKDAQGMTLDGTFSFIDFDRKTLEHRLRELAFLNSGVSIRFADLREAEPYETLLHY 252 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 GGI FV +LD+ K ++++P+ ++G R+ + +DLA++WND YHE +LCFTNNIPQ+DG Sbjct: 253 DGGIIEFVRHLDKAKTAIIKAPVAVRGHREKVEVDLALQWNDSYHETMLCFTNNIPQRDG 312 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTHL+ R ALTR +T+Y+E S +KK+K +V G+D REG T VLS+K+PDP+FSSQTK+ Sbjct: 313 GTHLAAFRGALTRVMTAYLESSGAAKKEKVTVTGEDAREGLTCVLSVKVPDPKFSSQTKD 372 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KLVSSEVR VE V D L+ W EE+P+EAK IV K+++A+ R+AAR+ARDLTRRK L Sbjct: 373 KLVSSEVRPAVEGLVYDKLTQWFEENPVEAKQIVNKIIEAASAREAARKARDLTRRKSAL 432 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 DI+SLPGKLADC ERDP +SELF+VEGDSAGGSAKQGR+RENQAILPLRGK+LNVERARF Sbjct: 433 DISSLPGKLADCQERDPARSELFIVEGDSAGGSAKQGRNRENQAILPLRGKVLNVERARF 492 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DKMLSS++IGTLI ALG GIG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM Sbjct: 493 DKMLSSEQIGTLIVALGAGIGRDDFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQM 552 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 P L+ G+LYI +PPLY + +GKS +Y+KD+ L+ YLI + + + L + I Sbjct: 553 PELLDKGYLYIAQPPLYKVAKGKSSRYLKDDAELDAYLIEEG-NHDAFLELRTGERIIGA 611 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 DL + A + IEQA ++G+F E E+ +A RL+ + Sbjct: 612 DLDAQVRAAKSFKASVDRLASRAPAFAIEQAALAGLFGAEPHLEL-------VARRLDRL 664 Query: 646 AEKSEKSWHGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 + + W + R RGV E+ L+ + + S ++ + + E + I Sbjct: 665 NQDGDGPWSAEAGPAGGYVFSRTRRGVTEKIALDEALLHSQDARRLGERAEGLVELFTDI 724 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 I GP L+ + GRKG+S+QRYKGLGEMNA QLWETTL+ + R+LL+ Sbjct: 725 SIFTRKDKSTDIRGPLDLVAAVLDAGRKGLSIQRYKGLGEMNAEQLWETTLDKEARTLLQ 784 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 VK+ A +AD++FS+LMGD VEPRREFIQEN+L + +D Sbjct: 785 VKVNHADEADEMFSKLMGDLVEPRREFIQENALDAEVD 822 >gi|167626458|ref|YP_001676958.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596459|gb|ABZ86457.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 803 Score = 886 bits (2290), Expect = 0.0, Method: Composition-based stats. Identities = 419/812 (51%), Positives = 550/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL G + GT +TF PS D Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LID+ + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDRIN--NRSEIFKYDGGIIAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKI+ +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L YL N L I F + IS L N+ + K +K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAVYLGNIGLEGAII-FLEGGNAISGQVLTNYYELYQKSEKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 IK + + + + + ES + ++ N A E+ + Sbjct: 594 IKKYAKTYPEKLLRVMAYGAKYVDESAD--IKQWWETIVDKCNHKALSYERFKLIETKDV 651 Query: 661 D--------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 D V G ++++ S + + + + + + + Sbjct: 652 DEDGQETISYGVNHYINGYDTDYIVKNSFFTTKDYEDLVTYGDVLSDISFKGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K + S +D + R+G +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYVDDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|56798248|dbj|BAD82891.1| GyrB [Burkholderia multivorans] Length = 824 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 392/829 (47%), Positives = 536/829 (64%), Gaps = 31/829 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+ V+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 1 MSEQHNSQPDNSSYGASSIQILEGLETVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGI-PT----DLHKEEGISAAEVIMTRLHAGGKFNQ 111 L GY + I VT++ D S +V DNGRGI PT D H E SAAE++MT LHAGGKF+Q Sbjct: 61 LAGYCNDIHVTIHADNSISVVDNGRGIRPTCMMNDKH-EPKRSAAEIVMTELHAGGKFDQ 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPL 159 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P+ Sbjct: 120 NSYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQDRVIEVVDGEEVSPM 179 Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 180 QVIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE- 237 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNN Sbjct: 238 -DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNN 296 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+F Sbjct: 297 IPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPEPKF 356 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVSSEVR+ VE V L +L E P +AKII K+++A+ RDAAR+AR++T Sbjct: 357 SSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMT 416 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LN Sbjct: 417 RRKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLN 476 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 477 VEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLLT 536 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FF+RQMP +I G++YI +PPLY + GK +Y+KD+ L +++ +L L ++ Sbjct: 537 FFYRQMPEMIERGYVYIAQPPLYKVKAGKDERYLKDDAELNAHMLRLALQGSELLPSENA 596 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 I+ + L L +I+ +D +E + + S + + A L Sbjct: 597 TPITGDALGELARSYLMSQSVIERLSRLYDPAALEAIMDGVSIDL-SSEASTEASAKALH 655 Query: 640 NRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695 L+ K+E + + V+R G V++ + + + Sbjct: 656 AALHDDTLKNEVRVVPAYDPVRELRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVNTAK 715 Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 E + + +T + + + + + +S QRYKGLGEMN QLWETT+ Sbjct: 716 TFEGLIQAGAVIKRGERSMAVTDFKNAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTM 775 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 776 DPNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 824 >gi|241668890|ref|ZP_04756468.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877422|ref|ZP_05250132.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843443|gb|EET21857.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 803 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 419/812 (51%), Positives = 550/812 (67%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSEN---KAYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNAIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +VSDNGRGIPTD+HKEEG SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 58 CDDIKVIINKDGSVSVSDNGRGIPTDIHKEEGRSAAEVILTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LKL I R G + +++G+ PL G + GT +TF PS D Sbjct: 118 HGVGVSVVNALSEQLKLTIYRNGIEHYQEYVHGVPQFPLKEVG-TTDKKGTVITFKPSKD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS DF+YD L R+RELSFLNS V+I LID+ + R Y GGI AFV YL+ K Sbjct: 177 TFSFVDFDYDILMKRIRELSFLNSGVKIELIDRIN--NRSEIFKYDGGIIAFVKYLNNSK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP+ ++ I + G +D+I ++LA++WND Y E++ CFTNNIPQ+DGGTHLSGL++A+TR + Sbjct: 235 KPIHENVIAVNGIKDDIQVELALQWNDSYKESIFCFTNNIPQRDGGTHLSGLKAAVTRTM 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K ++ G+D REG +VLS+K+PDP+FSSQTK+KLVSS+V+S VES V Sbjct: 295 NTYIESEGLNKKLKVTLTGEDTREGLAAVLSVKVPDPKFSSQTKDKLVSSDVKSAVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L +L E+P EAKI+ +K+LD++ R+AAR+ARD+TRRKG LDIA LPGKLADC E+ Sbjct: 355 NEKLQEFLLENPKEAKIVCEKILDSAKAREAARKARDMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQ R R+ QAILPL+GKILNVE+ARFDKML SQE+ TLI A Sbjct: 415 DPSLSEIYLVEGDSAGGSAKQARDRKTQAILPLKGKILNVEKARFDKMLGSQEVATLIKA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG + ++ +K RYHKII+MTDADVDG+HIRTLLLTFF+RQMP L+ G+LYI +PP Sbjct: 475 LGCGIGAEDYNPDKTRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELVERGYLYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+KDE++L YL N L I F + IS L N+ + K +K+ Sbjct: 535 LYKVKKGKQETYLKDEDALAVYLGNIGLEGAII-FLEGGNAISGQVLTNYYELYQKSEKV 593 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK---SWHGSI 657 IK + + + + + ES + ++ N A E+ + Sbjct: 594 IKKYAKTYPEKLLRVMAYGAKYVDESAD--IKQWWETIVDKCNHKALSYERFNLIETKDV 651 Query: 658 NNSDIL-----VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + V G ++++ S + + + + + + + Sbjct: 652 DEDGQETISYGVNHYINGYDTDYIVKNSFFTTKDYEDLVTYGDVLSDISFKGAYVERGAK 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K I S +D + R+G +QRYKGLGEMN QLWETT++PD R LL+V I DA + Sbjct: 712 KEYIDDFESAIDWLLKEARRGNDVQRYKGLGEMNPGQLWETTMDPDNRVLLQVSIKDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 AD LF+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 772 ADALFTTLMGDEVEPRRNFIESNALNVVNLDV 803 >gi|325265954|ref|ZP_08132640.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella denitrificans ATCC 33394] gi|324982592|gb|EGC18218.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella denitrificans ATCC 33394] Length = 800 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 399/807 (49%), Positives = 529/807 (65%), Gaps = 13/807 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Q Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEPTQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDNITVCINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WLKL I REG + + F G PL V G + GT V FL S Sbjct: 120 HGVGVSVVNALSDWLKLTIWREGKEHFVEFKRGETVEPLKVVGECSPDKHGTRVQFLASE 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 D F + + ++TL R+RELSFLN+ V+I L DKR + GG+ FV+Y+ Sbjct: 180 DTFGLVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--HENFAESGGVVGFVNYITGS 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKPL + G +D ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR+A+TR Sbjct: 238 KKPLHEKVFYTIGEKDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRAAMTRT 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV Sbjct: 298 INQYIEANEIAKKAKIDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIAPVVNEV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +LEE+P +AKII K+++A+ R+AAR+AR+LTRRKGV+D LPGKLADC E Sbjct: 358 LSQALHDFLEENPQDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLPGKLADCQE 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+ TLIT Sbjct: 418 KDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEVATLIT 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +P Sbjct: 478 ALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY GK +Y+KDE+ +++L+ ++ + + I +L L Sbjct: 538 PLYKAKAGKQERYLKDEQEKDEFLLGLAVDKAKIV--SGSRTIEGAELLKLAKQFLYARN 595 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSIN 658 I + D + + + +S+ ++A+ + N +A + G Sbjct: 596 TIAEESRVIDAAVLRALIDIEPISLDSEANAKAAVAALSGSLHNQEVALEYVAGHDG--- 652 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNGDKIKI 716 + + R G L+ + S + R + + + G+ ++ Sbjct: 653 GHFVKITRQLHGNVMVSYLDQKFVDSKAYQVLRKTAEQQRGLIGKDGAALYKGEGEPQRV 712 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LD++ +KG+++QRYKGLGEMN QLWETT++P R LL+V+I DA AD+ Sbjct: 713 ATFEEALDSLLQSAQKGMTIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADET 772 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGDEVEPRR FI+ N+L + +D Sbjct: 773 FVTLMGDEVEPRRAFIETNALVAQNID 799 >gi|332533697|ref|ZP_08409556.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis ANT/505] gi|332036861|gb|EGI73322.1| DNA gyrase subunit B [Pseudoalteromonas haloplanktis ANT/505] Length = 784 Score = 886 bits (2289), Expect = 0.0, Method: Composition-based stats. Identities = 396/786 (50%), Positives = 532/786 (67%), Gaps = 14/786 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I VT+++DGS +V DNGRGIPT +H+ Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDDIYVTIHLDGSVSVRDNGRGIPTSIHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS LKL ++REG ++E Sbjct: 61 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKLKLTVRREGKLHEQF 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + G+ D PL V G + TGTE+ F PS++ F+ DF+YD L RLRELSFLNS V I Sbjct: 121 YTMGVPDAPLAVIGDSE-TTGTELRFWPSAETFTNLDFHYDILAKRLRELSFLNSGVSII 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWND 267 L D+R E + Y+GGI+AFV YL+R+K P+ + R+ IS++++M+WND Sbjct: 180 LNDER-EENKSDHFKYEGGIQAFVEYLNRNKTPIHKGVFHFTHEREEDGISVEVSMQWND 238 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREG 325 Y EN+ CFTNNIPQ+DGGTHL+G RSALTR + +Y+EK +KK K + GDD REG Sbjct: 239 AYQENIYCFTNNIPQRDGGTHLAGFRSALTRTLNNYMEKEGFNKKAKTTSNATGDDAREG 298 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + + +L E+P +AKI+V K++DA Sbjct: 299 LTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQAMAEKFTEFLLENPTDAKIVVGKIIDA 358 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 S R+AAR+AR++TRRKG +D+A LPGKLADC E+DP +SEL++VEGDSAGGSAKQGR+R Sbjct: 359 SRAREAARKAREMTRRKGAMDLAGLPGKLADCQEKDPAQSELYIVEGDSAGGSAKQGRNR 418 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 +NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ KLRYH+IIIMTD Sbjct: 419 KNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPEKLRYHRIIIMTD 478 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDG+HIRTLLLTFF+RQMP ++ G++YI +PPLY + +GK +Y+KD+ +L +YL + Sbjct: 479 ADVDGSHIRTLLLTFFYRQMPEIVERGYIYIAQPPLYKVKKGKQERYIKDDPALVEYLTS 538 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 +L+ + L + D K+I+ + T +E+ + + Sbjct: 539 LALNNAALYPSADASALEGEALEQVVHDYQNTVKVIERLKRKYPNTVMERLIYQTELKTD 598 Query: 626 SDQEINVSLASKLANRLNFIAEKSEK-------SWHGSINNSDILVKRIARGVQEQFVLE 678 + +A + IA + + N +V GV + VL Sbjct: 599 DLSDEAKVIAWTKELVDDLIARDEDATIFHAGTEFDAERNMYYPVVNIRQHGVDKAHVLH 658 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738 I S + + I + + L+ + + ++GI +QR Sbjct: 659 YDFIASRDYQRIAVTGTNIANILKEGAYIQRGEKTKPVDNFVDALEWLITESKRGIYIQR 718 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN SQLWETT++P R +L+V I DA AD LF+ LMGD+VEPRREFI+ N+L Sbjct: 719 YKGLGEMNPSQLWETTMDPSARRMLQVTIEDAVGADQLFATLMGDQVEPRREFIETNALR 778 Query: 799 -SALDI 803 LD+ Sbjct: 779 VVNLDV 784 >gi|146328853|ref|YP_001209522.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A] gi|146232323|gb|ABQ13301.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A] Length = 800 Score = 885 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 401/802 (50%), Positives = 540/802 (67%), Gaps = 9/802 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SSYD+ I++LKGL+AV+ RP MYIG+TD SGLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SSYDSSRIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVI 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ + S TV DNGRGIP D+HKEEG SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 62 IHQNESITVRDNGRGIPVDIHKEEGRSAAEVIMTILHAGGKFDASSYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L+L I+R+G+I+ + +G PL + G +TGTE+ FL S + F +F Sbjct: 122 VNALSEKLELTIRRDGHIHYQQYRHGEPQAPLAIIGDTE-ETGTEIRFLASRETFHNVEF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +YDTL RL+ELSFLNS V+I L D+R + Y+GGI AF YL+R+K P+ + Sbjct: 181 DYDTLAKRLQELSFLNSGVRIVLTDERKDKT--EVFQYEGGIIAFTRYLNRNKTPIHDTI 238 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 +D ++++++WND Y ENV FTNNIPQ+DGGTH++G RSA+TR + +Y+E Sbjct: 239 FHCAIEKDASIVEISLQWNDSYQENVYYFTNNIPQRDGGTHMAGFRSAMTRTLNNYMEAE 298 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK K S GDD REG T+V+SIK+PDP+FSSQTK+KLVSSEV+ +VE +++ L + Sbjct: 299 GIAKKAKISTSGDDAREGLTAVVSIKIPDPKFSSQTKDKLVSSEVKGLVEGVLSEKLQEF 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L EHP EAKIIV K++DA+ R+AAR+AR++TRRK LDI LPGKLADC E+DP SEL Sbjct: 359 LYEHPNEAKIIVNKIVDAARAREAARKAREMTRRKDALDITGLPGKLADCQEKDPALSEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ARFDKML+S EI TLITALGTGIG+ Sbjct: 419 FLVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKARFDKMLASAEIATLITALGTGIGK 478 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + FD +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + +G Sbjct: 479 EDFDPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKKG 538 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K QY+KD+ L + L+N +L I++ + L ++ LIK F + Sbjct: 539 KQSQYLKDDHELNELLLNHALEGAELHVNKDAPAIAQPAFEALAREYLALEVLIKRFSHH 598 Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEK---SWHGSINNSDI 662 D ++ + + V N + E + L+ A+ + + + Sbjct: 599 IDSRVLKALMDAPVLNRDVFFAPEQLQAWLKDYQFHLDRFAQAGVRLTAHLDHNAATPRV 658 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + + L+ + + + F+ + + D++ + + Sbjct: 659 HIVIDQHANEIHNYLDANFAEASEYQKIADFAQKTHGLLQEGAFFSNDKDRVAVHYFSDV 718 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + +F+ G+K +QRYKGLGEMN QLWETTL+P R +L+VK+ DA AD++F+ LMG Sbjct: 719 MQALFAEGKKSYEIQRYKGLGEMNPEQLWETTLDPSVRRMLQVKVQDAMHADEVFTTLMG 778 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 +EVEPRR FI+EN++ + +DI Sbjct: 779 EEVEPRRAFIEENAIRAGNIDI 800 >gi|319411305|emb|CBY91715.1| DNA gyrase subunit B [Neisseria meningitidis WUE 2594] Length = 796 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|313667526|ref|YP_004047810.1| DNA gyrase subunit B [Neisseria lactamica ST-640] gi|309378243|emb|CBX23128.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313004988|emb|CBN86416.1| DNA gyrase subunit B [Neisseria lactamica 020-06] Length = 796 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 392/803 (48%), Positives = 529/803 (65%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKKGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SRALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + V+ +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKELEDAAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I D ++ + + + S + + ++A L+ L+ E+ G N Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSAESTDRAIAD-LSALLDEKEVVLER-VEGHEGNR 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ +L + + Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAVLKGLVAAGSTLFKGETEYPVGSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + +KG+ +QRYKGLGEMN QLWETT++P R LL+V++ DA AD++F L Sbjct: 713 EALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRVEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|308388431|gb|ADO30751.1| DNA gyrase subunit B [Neisseria meningitidis alpha710] gi|325130945|gb|EGC53672.1| DNA gyrase, B subunit [Neisseria meningitidis OX99.30304] gi|325137042|gb|EGC59638.1| DNA gyrase, B subunit [Neisseria meningitidis M0579] Length = 796 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|121634083|ref|YP_974328.1| DNA gyrase subunit B [Neisseria meningitidis FAM18] gi|120865789|emb|CAM09520.1| DNA gyrase subunit B [Neisseria meningitidis FAM18] gi|325133030|gb|EGC55703.1| DNA gyrase, B subunit [Neisseria meningitidis M6190] gi|325139102|gb|EGC61648.1| DNA gyrase, B subunit [Neisseria meningitidis ES14902] Length = 796 Score = 884 bits (2285), Expect = 0.0, Method: Composition-based stats. Identities = 394/803 (49%), Positives = 531/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|325980884|ref|YP_004293286.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212] gi|325530403|gb|ADZ25124.1| DNA gyrase, B subunit [Nitrosomonas sp. AL212] Length = 806 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 402/812 (49%), Positives = 549/812 (67%), Gaps = 15/812 (1%) Query: 1 MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MSD ++YD++SI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAID Sbjct: 1 MSDQNPHVPKENPANYDSESIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQK 112 E+L G+ D ITVT++ D S +V DNGRGIPT + + E SAAE++MT LHAGGKF+ Sbjct: 61 EALAGHCDEITVTIHPDNSVSVLDNGRGIPTGIKQDDEMKRSAAEIVMTELHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS WLKL I+R+ +++ F G+ PL + G + GTE Sbjct: 121 SYKVSGGLHGVGVSVVNALSEWLKLTIRRDSKTHQIEFRMGVPVKPLEIIGESERH-GTE 179 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 V FL S +IF +++YD RLRELSFLN+ V+I LID+RS + + GGI F Sbjct: 180 VHFLASKEIFGNIEYHYDIFAKRLRELSFLNNGVKIHLIDQRSGKD--EKFAFTGGIRNF 237 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V Y++R K L S G +DNI+++++M+WND Y E VLCFTNNIPQKDGGTHL+GL Sbjct: 238 VEYINRSKTVLHPSIFYTTGVKDNIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGL 297 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+A+TR + +Y+EK+ +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEV Sbjct: 298 RAAMTRTLNNYIEKNELAKKAKVETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEV 357 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VVE V LS +L E+PL+AK I K++D++ R+AAR+AR+LTRRKGVLD LPG Sbjct: 358 RPVVEEVVTQKLSEYLLENPLDAKTICNKIIDSARAREAARKARELTRRKGVLDSMGLPG 417 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC E++P EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQ Sbjct: 418 KLADCQEKNPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQ 477 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +LITALGTG G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G Sbjct: 478 EIISLITALGTGFGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERG 537 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY I GK +YVKD+ L+ +L++ +L++ + K +S L + Sbjct: 538 HIYIAQPPLYKIKHGKKERYVKDDHELKQHLLSLALTDAELHTGEGKPSLSGETLEKIAN 597 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + +I+ D + + + +++ ++ A++LA R+ + +E Sbjct: 598 EYILAEAVIERMSQMIDSNVMHALLRQPDIDL-HNEQTAINSAARLAARIKDVEIAAE-- 654 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + + + R++ G L+ + S + + E + Sbjct: 655 YDDVHERYRLKIMRMSHGNVLTSYLDNDFVESGDYVQIQKTAQVFEGLLDQGAYIRRGER 714 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K I L+ + +KG+++QRYKGLGEMN SQLWETT++P+ R LLR +I D+ Sbjct: 715 KQAINEFKHALEWLLEEAKKGLNVQRYKGLGEMNPSQLWETTMDPENRRLLRAQIEDSIL 774 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD VEPRR FI++N+L + +DI Sbjct: 775 TDEIFTTLMGDMVEPRRAFIEKNALRATNIDI 806 >gi|238023232|ref|ZP_04603658.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147] gi|237865615|gb|EEP66755.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC 51147] Length = 801 Score = 884 bits (2284), Expect = 0.0, Method: Composition-based stats. Identities = 401/808 (49%), Positives = 527/808 (65%), Gaps = 14/808 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N Y A SIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L GY Sbjct: 1 MTQQT-NQEYGAASIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDRITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVTFLPS 178 HGVGVSVVNALS WLKL I REG + + F G PL G+A + GT V FL S Sbjct: 120 HGVGVSVVNALSYWLKLTIWREGKEHFVEFKRGETVAPLKAIGAAQPENRHGTRVQFLAS 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 D F ++ ++TL R+RELSFLN+ V+I L DKR + GG++ FV Y+ Sbjct: 180 EDTFGTVEYKFETLAKRIRELSFLNNGVRIELFDKRDGK--HEDFAESGGVQGFVQYITG 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 KKPL G +D ++++ AM+WN+ Y E+V CFTNNIPQ+DGGTHL+ LR A+TR Sbjct: 238 SKKPLHSKIFYALGEKDGMTVECAMQWNESYQESVQCFTNNIPQRDGGTHLTALRQAMTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y+ + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ VV Sbjct: 298 TINQYIADNDIAKKAKVDTSGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEISPVVNE 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L +LEE+P +AKII K+++A+ R+AAR+AR+LTRRKGV+D LPGKLADC Sbjct: 358 VLGEALKNFLEENPNDAKIICGKIVEAARAREAARKARELTRRKGVMDGLGLPGKLADCQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARF++ML+SQE+ TLI Sbjct: 418 EKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFERMLASQEVATLI 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGT IG++ F++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI G++YI + Sbjct: 478 TALGTSIGKEEFNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELIERGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY GK +Y+KDE +++L+ ++ + + +L L+ Sbjct: 538 PPLYKAKHGKQERYLKDEMEKDEFLLGLAVDNAKIV--AGSRTLEGAELTKLAKQFLRAR 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSI 657 I + D + + + S+ ++A+ L + N IA + G Sbjct: 596 NTIAEESRVIDAAVLRALIDIEPIDLSSEPAAQHAIAALLGSLKNPEIALEHIAGQDG-- 653 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG--DKIK 715 I + R G L+ + S + + + + + + G + Sbjct: 654 -GHFIKITRQLHGNVMVSYLDQKFVDSKAYQVLLKTAEQQRGLIGSEGAALHKGDAEAQH 712 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + + LD++ + +KG++MQRYKGLGEMN QLWETT+NP+ R LL+V+I DA AD+ Sbjct: 713 VASFEAALDSLLATAQKGLTMQRYKGLGEMNPEQLWETTMNPEVRRLLKVRIEDAIAADE 772 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGDEVEPRR FI+ N+L + +D Sbjct: 773 TFVTLMGDEVEPRRAFIEANALVAQNID 800 >gi|118594216|ref|ZP_01551563.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181] gi|118439994|gb|EAV46621.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181] Length = 803 Score = 883 bits (2283), Expect = 0.0, Method: Composition-based stats. Identities = 418/808 (51%), Positives = 551/808 (68%), Gaps = 10/808 (1%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ + N+ Y+ADSI+ILKGLDAV+KRP MYIGDT SGLHHM++EVLDNAIDESL Sbjct: 1 MSEKDDLNNADYNADSIKILKGLDAVRKRPGMYIGDTSDGSGLHHMVFEVLDNAIDESLA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKV 116 G+ + I V ++ D S TV+DNGRGIPTD+ + E SAAE++MT LHAGGKF+Q SYKV Sbjct: 61 GHCNDIKVIIHADNSITVTDNGRGIPTDIKEDDEFKRSAAEIVMTELHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS WL+LR+ R G ++E+ F G PL G + TGTEVTFL Sbjct: 121 SGGLHGVGVSVVNALSDWLRLRVYRAGKVHEVEFKRGERVAPLKAVGDT-DKTGTEVTFL 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++ F+ DF+++ L R+RELSFLN+ V+I LID RS + + GGI+ FV Y+ Sbjct: 180 PSTETFNNVDFHFELLCKRIRELSFLNNGVKIELIDHRSGKS--ENFEFSGGIKGFVQYM 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K L Q+P ++ ISID++M+WND Y ENV CFTNNIPQ+DGGTHL+GLR+A+ Sbjct: 238 NRSKNVLHQTPFHAFAEKEGISIDVSMQWNDSYGENVQCFTNNIPQRDGGTHLTGLRAAM 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I +Y+E + +KK K GDD REG T VLS+K+P+P+FSSQTK+KLVSSEV+ VV Sbjct: 298 TRTINTYIESNELAKKAKVDTGGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVQPVV 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + V L+ +L EHP +AKII K++DA+ R+AAR+ARD+TRRKG +D LPGKLAD Sbjct: 358 QDLVGKKLTDYLLEHPKDAKIICNKIVDAARAREAARKARDMTRRKGAMDSLGLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP + E++LVEGDSAGGSAKQGR R+NQAILPL+GKILNV +AR DK+LSSQEI T Sbjct: 418 CQEKDPAQCEVYLVEGDSAGGSAKQGRDRKNQAILPLKGKILNVMKARLDKILSSQEITT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG GIG FD+ KLRYH+IIIMTDADVDGAHIRTLLLTFFFRQMP L+ G ++I Sbjct: 478 LITALGAGIG-QDFDVAKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPQLVEKGHIFI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +GK +Y+KDE+ L+ YL+N +L+ L I L + + + Sbjct: 537 AQPPLYKVKQGKDERYLKDEQELDQYLVNSALNNASLLTKKGGETIEGGALNSLAREMVL 596 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + +IK +D++ + G N D+ ASKL ++ K E H S Sbjct: 597 TESVIKRLSSRYDESIVRAIHDLGELNLA-DKNATQQYASKLEAIMSANNIKFEVKKHES 655 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 N I + + G + +++ + S K SN ++ + + Sbjct: 656 SENFLIEMNQFVHGNLQASIIDEEFLLSGEYKQIIKSSNLLKNLIDDGAVITRGEKSKPV 715 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L + + +++QRYKGLGEMN SQLWETT++P+ R+LL+V I D ++ + Sbjct: 716 VNFTQALAWLIDEAKNTLNIQRYKGLGEMNPSQLWETTMDPEVRTLLQVTIEDFTELEAT 775 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F RLMGD+VEPRR+FI+EN+L + LDI Sbjct: 776 FERLMGDQVEPRRQFIEENALGANNLDI 803 >gi|261400946|ref|ZP_05987071.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970] gi|269209189|gb|EEZ75644.1| DNA gyrase, B subunit [Neisseria lactamica ATCC 23970] Length = 796 Score = 883 bits (2282), Expect = 0.0, Method: Composition-based stats. Identities = 393/803 (48%), Positives = 528/803 (65%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKVVGDS-DKRGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + V+ DL + L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGKVLEGKDLEDAAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I D ++ + + + S + + ++A L+ L+ E+ G N Sbjct: 595 IGQESRIIDDLVLKAMLYAEPVDLSSAESTDRAIAD-LSALLDEKEVVLER-VEGHEGNR 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G LE + S + + ++ +L + + Sbjct: 653 FIKITRKLHGNVMTSYLESKFLNSKAYQTIVQTAAVLKGLVAAGSTLFKGETEYPVGSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + +KG+ +QRYKGLGEMN QLWETT++P R LL+V + DA AD++F L Sbjct: 713 EALDILLQNVQKGMGIQRYKGLGEMNPEQLWETTMDPSVRRLLKVHVEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|331007621|ref|ZP_08330763.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989] gi|330418561|gb|EGG93085.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989] Length = 780 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 378/784 (48%), Positives = 519/784 (66%), Gaps = 14/784 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++E++DN+IDE+L G+ I V ++ D S +VSDNGRGIPT++H Sbjct: 1 MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSEIKVIIHPDESVSVSDNGRGIPTEIH- 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSVVNALSS LK+ I+R+G ++E Sbjct: 60 EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELKMTIRRQGKVHEQI 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ PL V G +GTEV F PS++ F+ F +D L RLRELSFLNS V+I Sbjct: 120 YKHGVPQAPLAVIGDTE-RSGTEVHFKPSAETFTNIKFYFDQLAKRLRELSFLNSGVRIV 178 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG-SRDNISIDLAMRWNDG 268 L D+RS + Y+GG+ AFV+YL+ +K P+ + D +S+++A++WND Sbjct: 179 LKDERSAKE--EIFEYEGGLHAFVAYLNTNKNPINKVMHFSSYREEDGVSVEVALQWNDS 236 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 + EN+LC+TNNIPQ+DGGTHL+G R+ALTR + SY+EK KKDK + GDD REG T+ Sbjct: 237 FQENLLCYTNNIPQRDGGTHLAGFRAALTRGLNSYIEKEGVLKKDKVNTTGDDAREGLTA 296 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 ++S+K+PDP+FSSQTK+KLVSSEV+S VE + + +L E+P EAK IV K+++A+ Sbjct: 297 IVSVKVPDPKFSSQTKDKLVSSEVKSAVEQEMGKAFNDYLLENPQEAKSIVGKMIEAAKA 356 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R+AAR+AR++TRRKG LDIA LPGKLADC E+DP SE++LVEGDSAGGSAKQGR R+ Q Sbjct: 357 REAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSEVYLVEGDSAGGSAKQGRDRKTQ 416 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG + F+ +KLRYH+IIIMTDADV Sbjct: 417 AILPLKGKILNVEKARFDKMLSSVEVGTLITALGCGIGAEEFNADKLRYHRIIIMTDADV 476 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG+HIRTLLLTFFFRQ L+ G +YI +PPLY I +GK QY+KDE + N +L Sbjct: 477 DGSHIRTLLLTFFFRQTRELVERGHIYIAQPPLYKIAKGKQEQYIKDEAGKTAFFTNVAL 536 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + IS L + + ++ I + + +E+ + + + Sbjct: 537 DGGEVFTNPTAPAISGTALEALVKEYRQVLSTIDRLSRLYPEAVLEKMIYMPALSLDELS 596 Query: 629 EINV--SLASKLANRLNFIAEKSEKSWHGSINNSD------ILVKRIARGVQEQFVLEGS 680 ++ S ++ L+ L + + +I + +++++ G+ ++ Sbjct: 597 NLDAVTSWSNNLSVALEEVETSGSSRYLVTIKEDEERKLFLPQIEKLSHGLSHEYPFSHD 656 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 S +++ + + + LD + S +G +QRYK Sbjct: 657 FFASGEYHSIVELGKKLDGLIEEGGKVKRGEREQPVESFKQALDWLMSESSRGYMIQRYK 716 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++P TR +L+V I DA AD +F+ LMGD VEPRR+FI+ N+L Sbjct: 717 GLGEMNPEQLWETTMDPSTRRMLQVTIEDAIAADQIFTTLMGDNVEPRRDFIETNALTVE 776 Query: 800 ALDI 803 LD+ Sbjct: 777 NLDV 780 >gi|304389025|ref|ZP_07371071.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria meningitidis ATCC 13091] gi|304337006|gb|EFM03194.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Neisseria meningitidis ATCC 13091] Length = 796 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 394/803 (49%), Positives = 530/803 (66%), Gaps = 9/803 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL V G + + GT V FL S++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLNVVGDS-DKKGTTVRFLASTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIETNEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLADC E+ Sbjct: 357 SQALTDFLEENPAEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ LITA Sbjct: 417 DPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVAALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 477 LGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L N L + Sbjct: 537 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDSRTIEGEELANTAKQFLLAKTV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + + + + S+A L L+ E+ + Sbjct: 595 IEQESRFVDELVLRAMLHASPVDLSTAESADRSVAE-LNGILDEKEVALERIEGHEGHRF 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L + Sbjct: 654 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGMVGEGAKLYKGENGYDADSFE 712 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD++F L Sbjct: 713 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAVRRLLKVRIEDAIAADEVFVTL 772 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 773 MGDEVEPRRAFIENNALIAQNID 795 >gi|254483322|ref|ZP_05096553.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148] gi|214036417|gb|EEB77093.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148] Length = 778 Score = 882 bits (2280), Expect = 0.0, Method: Composition-based stats. Identities = 377/782 (48%), Positives = 518/782 (66%), Gaps = 12/782 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++E++DN+IDE+L G+ I + ++ D S TVSD+GRGIPT++H Sbjct: 1 MYIGDTDDGTGLHHMVFEIVDNSIDEALAGHCSRIDIVIHPDESVTVSDDGRGIPTEMH- 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSVVNALSS L L I+R+G +YE + Sbjct: 60 EEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSSELLLTIRRDGKLYEQT 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ PL + G +GT V F PS+ F+ +F++D L RLREL+FLNS V I+ Sbjct: 120 YRHGVPAAPLEMVGDTE-TSGTSVRFHPSNQTFTNIEFHFDQLGKRLRELAFLNSGVCIA 178 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+RS + Y+GG+ AFV YL+++K P+ + + + + +++A++WND + Sbjct: 179 LKDERSGQE--EIYSYEGGLNAFVDYLNKNKTPINKPFYFQIDTDEGVGVEVALQWNDSF 236 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 EN+LC+TNNIPQ+DGGTHL+G R+ALTR + +Y+EK +KK + GDD REG T++ Sbjct: 237 QENLLCYTNNIPQRDGGTHLAGFRAALTRNLNNYIEKEGLAKKAAVNTTGDDAREGLTAI 296 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+K+PDP+FSSQTK+KLVSSEV++ VE +N +L E+P EAK +V K+LDA+ R Sbjct: 297 VSVKVPDPKFSSQTKDKLVSSEVKTAVEQAMNARFGEFLLENPQEAKAVVGKMLDAARAR 356 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AAR+AR++TRRKG LDIA LPGKLADC E+DP EL+LVEGDSAGGSAKQGR+R+ QA Sbjct: 357 EAARKAREMTRRKGALDIAGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRNRKFQA 416 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVE+ARFDKML S E+GT++TALG GIG++ F+ +KLRYH IIIMTDADVD Sbjct: 417 ILPLKGKILNVEKARFDKMLGSAEVGTIVTALGCGIGKEEFNPDKLRYHNIIIMTDADVD 476 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTFFFRQM L+ G +YI +PPLY I RGK QY+KD+E+L YL +L Sbjct: 477 GSHIRTLLLTFFFRQMRELVERGHVYIAQPPLYKIARGKQHQYLKDDEALNQYLTQSALE 536 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD-- 627 IS L++ +D + I+ + + + V + Sbjct: 537 NASIFVNPDAPAISGEALQSLVDQYRSVAATIERLSRLYSPEVLWEMVYGAFLKVDEMKD 596 Query: 628 QEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682 ++ + A +L+ RL+ + +VK +A G++ + Sbjct: 597 EQAVAAFADQLSERLHSSESGSAVYSAVVRKDQERQLFFPVVKLLAHGIESETEYHHEFF 656 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742 S + + + + LD + + RKG ++QRYKGL Sbjct: 657 SSGEYRSLVELGETLNTLIEEEGYIQRGEKTLHTQSFAEALDWLMTEARKGYTIQRYKGL 716 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN QLWETT++P+ R +L+V I DA AD +F+ LMGD VEPRR+FI+EN+L L Sbjct: 717 GEMNPEQLWETTMDPEVRRMLQVTIEDAIAADQIFTTLMGDNVEPRRDFIEENALSVANL 776 Query: 802 DI 803 D+ Sbjct: 777 DV 778 >gi|209966328|ref|YP_002299243.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW] gi|209959794|gb|ACJ00431.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW] Length = 876 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 456/862 (52%), Positives = 578/862 (67%), Gaps = 67/862 (7%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A SI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GYAD + VT Sbjct: 16 EEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEVT 75 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV DNGRGIP D+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSV Sbjct: 76 LNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 135 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------NDTGTEVTFLP 177 VNALS L LR+ R+G ++EM+F +G PL G+A TGTEVTFLP Sbjct: 136 VNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFLP 195 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S F+ +F++ TL+HR REL+FLNS V + D R EP+ +FY+GG+EAFV YLD Sbjct: 196 SKQTFTKTEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQYLD 255 Query: 238 RHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 R K L + I ++G R +++++A++WND YHE+ LCFTNNIPQ+DGGTHL+G Sbjct: 256 RSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCLCFTNNIPQRDGGTHLAGF 315 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALTR I Y E+S KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 316 RAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 375 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R VVE+ V D L+ W EEHP +A+ IV KV++A+ R+AARRAR+LTRRKG LD+ASLPG Sbjct: 376 RPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASLPG 435 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP SELF+VEGDSAGGSAKQGRSR+ QAILPLRGKILNVERARFDKMLSS Sbjct: 436 KLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLSSA 495 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EIGTLI ALGTGIG++ FD +K RYHKIIIMTDADVDGAHIRTLLLTFF+RQMP+LI G Sbjct: 496 EIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIERG 555 Query: 533 FLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 +LYI +PPLY + RG +Y+KD+ LEDYLI Q ++ S +DLR + Sbjct: 556 YLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTD-DVTFTLGDGTTRSGDDLRALV 614 Query: 592 DDALKIDKLIKDFYPN-HDKTFIEQAVISGVFN--CESDQEINVSLASKLANRLNFIAEK 648 + A + + +EQA +SG + + ++ +LA ++A RLN +A + Sbjct: 615 EQARVARHALTTLARKAGSREVVEQAALSGALSSRLLDNPDLARTLAEEVARRLNDLAVR 674 Query: 649 ---------------------------------------------SEKSWHGSINNSDIL 663 +E G + Sbjct: 675 QAAAALQASGGPAPEGDGSPGSASAAGATGTGTASTGGVPAGGWTAELIEDGPHGVGGYV 734 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSL 722 + R RGV + VL+ + S ++ + + Y T L ++ + GP L Sbjct: 735 LARRRRGVTHRHVLDVDLLKSVEARRLDGMAEALRAVYDTPGVLTHRVKRLAAVAGPAGL 794 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 +D + GR G+++QRYKGLGEMN QLWETTL+P R+LL+VK++ A +A+++FS LMG Sbjct: 795 MDAVIEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVFSTLMG 854 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRR+FIQEN+L LD+ Sbjct: 855 DLVEPRRDFIQENALKVANLDV 876 >gi|307728079|ref|YP_003905303.1| DNA gyrase subunit B [Burkholderia sp. CCGE1003] gi|307582614|gb|ADN56012.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1003] Length = 823 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 388/828 (46%), Positives = 536/828 (64%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 GY + I V ++ D S +++DNGRG+PT D H E SAAE++MT LHAGGKF+Q Sbjct: 61 AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLV 160 SYKVSGGLHGVGVS VNALS+WL+L ++R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L+D+RS + Sbjct: 180 VIGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPL+ I GK +Y+KDE + +++ +L L ++ Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDETEVNAHILKLALQGSELLPSENGT 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ L L ++ +D +E + + S+ S + A Sbjct: 597 AITGEALGELARAYLLAQAVVDRLSRLYDAGALEAVMDGVAIDLSSEAAAEASAKALEAK 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L A K E + + + V R G Q+ V + + + +N Sbjct: 657 -LRDDALKPEVTVTQMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGSGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|85710072|ref|ZP_01041137.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1] gi|85688782|gb|EAQ28786.1| type IIA topoisomerase B subunit [Erythrobacter sp. NAP1] Length = 848 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 426/840 (50%), Positives = 566/840 (67%), Gaps = 45/840 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L G+ D Sbjct: 15 NEKMKGDYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCD 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSG 118 ++ + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF + +YKVSG Sbjct: 75 LVLIELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSG 134 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------ND 168 GLHGVGVSVVNALS WL+L I R G + M F +G N L + G A Sbjct: 135 GLHGVGVSVVNALSEWLELVIWRNGQEHWMRFEHGDAVNSLEIKGDAPKVEQNPDDNGYK 194 Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GT VTF S+D F +F+++ L+HR REL+FLNS V+I + D R EP E +FY+G Sbjct: 195 KGTRVTFKASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRILIRDLRHEEPIEHDLFYEG 254 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 GI AFV +LDR+K+ L++ PI + +D I ID+A+ WND Y+ENVLCFTNNIPQ+DGGT Sbjct: 255 GIAAFVKWLDRNKEALIEDPISVSAEKDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGT 314 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 HL+ R+ALT + +Y E+S K K S+ G+D REG T+++S+K+PDP+FSSQTK+KL Sbjct: 315 HLAAFRAALTSTLNNYAERSGLLSKAKVSLSGEDMREGLTAIVSVKLPDPKFSSQTKDKL 374 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 VSSEVR ++S + + ++ WLEE+P +AK I++K++DA A + RKG + + Sbjct: 375 VSSEVRQPLQSLMGEKMNEWLEENPGDAKAIIQKIVDA-AAAREAAKRAREMSRKGAMSV 433 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC ERD K+ELFLVEGDSAGGSAK GR + QAILPLRGKILNVERARFD+ Sbjct: 434 ASLPGKLSDCRERDATKAELFLVEGDSAGGSAKGGRDSQYQAILPLRGKILNVERARFDR 493 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 ++SS+E+GTLI A+GTGI +D FD+ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP Sbjct: 494 IISSREVGTLIQAMGTGI-RDEFDLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPE 552 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 ++ G L+I +PPL+ + +GKS YVKD+ +L+ YL++ L + S G S DL Sbjct: 553 IVKAGHLFIAQPPLFKVAKGKSEVYVKDQAALDRYLVDAGLQGRVLE--TSGGARSGEDL 610 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 R +D+AL++ LI +D+ IEQ +SG + + ++ A+RL A Sbjct: 611 RALVDNALRLKNLIAFVPRRYDRAVIEQMALSGALDPKLADADRLAALEAAASRLE--AS 668 Query: 648 KSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 ++ W S+ N + R+ RGV + ++G + S + ++ + + Y + Sbjct: 669 DADAKWSVSVRENGSVQFSRLWRGVTDVHEIDGRFLTSTEAIKLHGLASPLADAYEGSVR 728 Query: 707 LICNGD----------------------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 L+ GD + IT P LLDT+ + GRKG+S+ RYKGLGE Sbjct: 729 LVKAGDVAEEEPDTASEDEDGDEPAALAEDAITRPSQLLDTVLAAGRKGLSISRYKGLGE 788 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 MN QLWETTL+P+ R LL+VK+ DA D++F+RLMGD VEPRREFIQ+N+L LD+ Sbjct: 789 MNPEQLWETTLDPENRILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV 848 >gi|166709899|ref|ZP_02241106.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzicola BLS256] Length = 814 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 407/816 (49%), Positives = 541/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E +Q + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVETLHAEGNQHPALDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|114330039|ref|YP_746261.1| DNA gyrase subunit B [Nitrosomonas eutropha C91] gi|114307053|gb|ABI58296.1| DNA gyrase subunit B [Nitrosomonas eutropha C91] Length = 809 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 408/807 (50%), Positives = 547/807 (67%), Gaps = 11/807 (1%) Query: 2 SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 + N ++S YD++SI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G Sbjct: 9 TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117 Y D I+V ++ D S +V DNGRGIPTD+ + E+ SAAE++MT LHAGGKF+ SYKVS Sbjct: 69 YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+ PL VTG + GTEV FL Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S IF ++YD RLRELSFLN ++I L+D+R + RE T + GGI FV Y++ Sbjct: 188 SQAIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDRR--DNREETFAFSGGIRNFVEYIN 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K L S +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + SY+EK+ +KK K GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V+ LS ++ E+P EAKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DPK EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK +Y+KD+ L+ +++ +L I L D+ L Sbjct: 546 QPPLYKIKHGKQERYLKDDYELKRHILGLALVGAELHPGMDNPPIVGETLAKIADEYLVA 605 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + +I+ D+ + + + S + A +LA+ L+ + + + Sbjct: 606 EAVIERMSQLIDRAVMYALLKQPNIDL-SSEASAQDSAVRLASLLDDV--EITAEYDEDS 662 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N + + R G L+ + S R + + + ++ I Sbjct: 663 ENYQLRINRKQHGNLRTSYLDTDFLKSGDFAKIRQTAQILHGLIGEGAKVKRGEQEVPIL 722 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + + +KG+++QRYKGLGEMN QLWETT++P R LLRV+I D+ D++F Sbjct: 723 EFKEALEWLLAEAKKGVTIQRYKGLGEMNPEQLWETTMDPSNRLLLRVQIEDSILTDEIF 782 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD VEPRR FI+ N+L + +DI Sbjct: 783 TTLMGDVVEPRRAFIESNALRARNIDI 809 >gi|187479879|ref|YP_787904.1| DNA gyrase subunit B [Bordetella avium 197N] gi|115424466|emb|CAJ51020.1| DNA gyrase subunit B [Bordetella avium 197N] Length = 817 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 387/821 (47%), Positives = 529/821 (64%), Gaps = 24/821 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD + S Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNIGPETSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L GY D I VT++ D S +V+DNGRGIPTD+HK E G SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL VTG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V+I LID+R + + GG++ FV Sbjct: 180 FLADPIIFTNIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+ Sbjct: 238 YINRAKTVLHPNVFAVSTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR I Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEDAVARSLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+I+KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +YI +PPL+ + G+ +Y+KDE +++ +L + L + IS L Sbjct: 537 RGHIYIAQPPLFKVKVGREERYLKDEVEEAKFMLQLALKDAQLLPREGAATISGEALAEL 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + +D +I D + GV DQ + A +L + L+ A + Sbjct: 597 ARQYVLVDTVISRLSRVFDVPALSALA-EGVDIKLDDQAAAEASAQRLHDALHDPAHPNS 655 Query: 651 K----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 H + ++V+R+ G +++ + ++ Sbjct: 656 VTVTAELHPDGDTYRLVVRRMHHGNYRVSIIDADFVSGADYAVLVKSASTFMGLIGPGAV 715 Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + + ++ + + + +G+S QRYKGLGEMN QLWETT++P R L Sbjct: 716 VARGEGDKRREQPVSDFREAMQWLRTEAERGLSKQRYKGLGEMNPDQLWETTMDPAVRRL 775 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 LRV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSASNID 816 >gi|117923324|ref|YP_863941.1| DNA gyrase subunit B [Magnetococcus sp. MC-1] gi|117607080|gb|ABK42535.1| DNA gyrase subunit B [Magnetococcus sp. MC-1] Length = 812 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 418/818 (51%), Positives = 556/818 (67%), Gaps = 21/818 (2%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M+ +YD+ +I++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAID Sbjct: 1 MTTENAPEAQHDHSTYDSTNIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAID 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ D + V L+ DGSC+VSDNGRGIPTD+HKEEG SAAEVIMT LHAGGKF+ SY Sbjct: 61 EALAGHCDRVEVILHTDGSCSVSDNGRGIPTDMHKEEGRSAAEVIMTVLHAGGKFDDNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 K+SGGLHGVGVSVVNALS L+L IKR G + ++ G PL V G D+GT V Sbjct: 121 KISGGLHGVGVSVVNALSETLELTIKRGGKVCHQTYHLGEPTAPLAVIGDTP-DSGTTVR 179 Query: 175 FLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F PS IF +F++DTL RLRELSFLN V+I + D+R + FY+GGI +FV Sbjct: 180 FKPSPLIFHNVLEFSFDTLSQRLRELSFLNDGVRIFIHDERDDKSH--NFFYEGGIRSFV 237 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YL++ + PLM PI + R+ I+ ++A++WND Y ENV CFTNNIPQ+DGGTHL+G R Sbjct: 238 EYLNKARTPLMP-PIHFRDERNGITAEVALQWNDSYQENVYCFTNNIPQRDGGTHLAGFR 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR I +Y + KK+K ++ GDDCREG T+V+S+K+PDP+FSSQTK+KLVSSEVR Sbjct: 297 GALTRTINNYASANNLLKKEKVTISGDDCREGLTAVISVKVPDPKFSSQTKDKLVSSEVR 356 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VVES + + L + EEHP EAK I+ K ++A+ R+AAR+AR+LTRRK L+I+SLPGK Sbjct: 357 PVVESVIGESLGTFFEEHPAEAKAIIAKSVEAANAREAARKARELTRRKSALEISSLPGK 416 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC ERDP K EL+LVEGDSAGGSAKQ R R++QA+LPL+GKILNVE+ARFDKM+SSQE Sbjct: 417 LADCQERDPAKCELYLVEGDSAGGSAKQARDRKHQAVLPLKGKILNVEKARFDKMISSQE 476 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +GTLITALGTGIG++ ++I KLRYH IIIMTDADVDGAHIRTLLLTFF+RQMP ++ G Sbjct: 477 VGTLITALGTGIGREEYNIEKLRYHHIIIMTDADVDGAHIRTLLLTFFYRQMPEIVKRGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI +PPLY +++GK QY+KD+++L L+N L + V+ + L + D Sbjct: 537 LYIAQPPLYRVSKGKQEQYLKDDDALNQLLMNYGLHG--VEGRNGSKVLDEAALSVLVRD 594 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIAEKSEK 651 A + K++ +HD ++ A + + ++ +L + L + E+ Sbjct: 595 AARYRKMLDRLGRHHDALALDIAASALHIDEAILKDSAAAGALIAPFTEMLQARGGEEER 654 Query: 652 -----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 ++ ILV+R G+ + L + + S K + R +E Sbjct: 655 LQVSLLHDPETSSWVILVERAVHGMLQFTRLNLAMVHSAEYKAMLAIAKRYQEEMGDEGQ 714 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 L+ N L + GR+G+++QRYKGLGEMN QLWETT++P R+LL+V+ Sbjct: 715 LVKNEKSSPAGRVADFLQLVLDEGRRGLTIQRYKGLGEMNPDQLWETTMDPSVRTLLQVR 774 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D A+++F+ LMGD VEPRR+FIQEN+L LD+ Sbjct: 775 VDDEVGANEVFTTLMGDVVEPRRDFIQENALNVTNLDV 812 >gi|21229482|ref|NP_635399.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766356|ref|YP_241118.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|188989400|ref|YP_001901410.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str. B100] gi|21110942|gb|AAM39323.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571688|gb|AAY47098.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris str. 8004] gi|167731160|emb|CAP49332.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris] Length = 814 Score = 882 bits (2278), Expect = 0.0, Method: Composition-based stats. Identities = 403/816 (49%), Positives = 539/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQTTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V +++DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKIHVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P+ +IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPAVEIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R A Sbjct: 239 LAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFA 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 + I +D + + + E D + + NR + Sbjct: 599 GAKEAIARNAHRYDPALLTALIDLPPLDVVQLQAEGDVHPTLDALQAVLNRGTLGTARYH 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + ++ + ++ R G + VL + S + R + + ++ Sbjct: 659 LRFDPATDSAAASLVSVRKHMGEEFTQVLPMGAFESGELRPLREVALALHGLVREGAQIL 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + ++G +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAQAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|91781387|ref|YP_556593.1| DNA gyrase subunit B [Burkholderia xenovorans LB400] gi|91685341|gb|ABE28541.1| DNA gyrase subunit B [Burkholderia xenovorans LB400] Length = 823 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 395/828 (47%), Positives = 544/828 (65%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNSQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 G+ + I V ++ D S +++DNGRG+PT D H + SAAE++MT LHAGGKF+Q Sbjct: 61 AGHCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-DPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALS+WL+L I+R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTIRRDGKKHFMEFHRGVPQNRIIEEIDGVAVSPIQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 VTG + GTEV FL IF +++YD L R+RELSFLN+ V+I L D+R+ + Sbjct: 180 VTGETE-NRGTEVHFLADETIFGNIEYHYDILAKRIRELSFLNNGVRIKLTDQRTGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y++++K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 EDFAFVGGVKGFVEYINKNKSVLHPNIFHISGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYINDHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 +QTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 AQTKDKLVSSEVRAPVEDVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPL+ I GK +Y+KDE + +++ +L L + Sbjct: 537 FYRQMPEMIERGYIYIAQPPLFKIKAGKDERYLKDEAEVNAHILKLALQGSELLASEGAT 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L ++ +D +E AV+ GV S +E A+ L Sbjct: 597 PITGDALGELARAYLLAQAVVNRLSRLYDAGALE-AVMDGVVVDLSSEEAAEVSAAALEA 655 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 +L A K E + + V R G Q+ VL+ + + +N Sbjct: 656 KLRDDALKPEVKVTTMYDPVRELRSLRVARTHHGNQKISVLDQDFQLTADYQQLINTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + T + + +T S + + + + IS QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGTGAVIKRGERSMAVTDFKSAMKWLLADAERNISKQRYKGLGEMNPGQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PTVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|56477036|ref|YP_158625.1| DNA gyrase subunit B [Aromatoleum aromaticum EbN1] gi|56313079|emb|CAI07724.1| DNA gyrase (Subunit B) [Aromatoleum aromaticum EbN1] Length = 831 Score = 881 bits (2277), Expect = 0.0, Method: Composition-based stats. Identities = 383/836 (45%), Positives = 524/836 (62%), Gaps = 38/836 (4%) Query: 1 MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS++ + +YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DNAID Sbjct: 1 MSESQVLPHTPEPDAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAID 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKF 109 E+L G+ D I +T++ D S +V+DNGRGIP D H E SAAE++M LHAGGKF Sbjct: 61 EALAGHCDDIVITIHADNSISVADNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKF 119 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DN 157 NQ SYKVSGGLHGVGVS VNALS WL L + R+G + + F +G+ + Sbjct: 120 NQNSYKVSGGLHGVGVSCVNALSKWLHLTVARDGKKHFIEFHHGVPQNRVIELVDGVEVS 179 Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217 P+ +TG GT V +L +IF +++Y+ L RLRELSFLN+ V+I L+D+RS + Sbjct: 180 PMRITGETT-KRGTRVHYLADEEIFGTVEYHYEILAKRLRELSFLNNGVKIRLVDQRSGK 238 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI---------QGSRDNISIDLAMRWNDG 268 + GG++ FV Y++R K L + G + +++AM+WND Sbjct: 239 E--EDFAFAGGVKGFVEYINRTKSVLHPTVFYAAGTTRIPTGHGHDAELGVEVAMQWNDS 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E VLC+TNNIPQ DGGTHL+GLR+A+TR I Y+E+ +KK K + GDD REG Sbjct: 297 YAEQVLCYTNNIPQADGGTHLTGLRAAMTRIINKYIEEHEIAKKAKVDITGDDMREGLAC 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 VLS+KMPDP+F+SQTK KLVSSE R VE V + L+ +L+E+PL+AK I K+++A+ Sbjct: 357 VLSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLTDFLQENPLDAKTICAKIVEAARA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 RDAAR+AR++TRRKG+LD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ Q Sbjct: 417 RDAARKAREMTRRKGLLDGVGLPGKLADCQEKDPALCEIYLVEGDSAGGSAKQGRDRKFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPL+GKILNVE+ARFDK+L SQEI T+ITALGTGIG+D + KLRYH+IIIMTDADV Sbjct: 477 AILPLKGKILNVEKARFDKLLQSQEIATMITALGTGIGKDDYKPEKLRYHRIIIMTDADV 536 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTLLLTFF+RQMP L+ G +YI +PPLY I GK+ Y+KDE +L +L+ +L Sbjct: 537 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKNEMYIKDENALNQHLLKLAL 596 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + L + I+ L L + +I D + + + D+ Sbjct: 597 DGAVLLPREGAAPIADEALGGLARSYLLAEAVINRLAGYVDPAVLHAMLAQNLAVNLDDE 656 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 A+++ L + +H + + ++R+ G ++ + + + Sbjct: 657 AAARDSAARIQPHLPA-SVTIRPEYHDEAESWRLAIERMHHGNLRLAWIDEEFLITGDYR 715 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 R + I + + IT + + +G++ QRYKGLGEMN Sbjct: 716 SIRTAAEAISDLIGVGAEIRRGEKSHPITRFSEAIRWLLGEVERGLTKQRYKGLGEMNPE 775 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++P R LL+V+I DA AD++F+ LMGD VEPRR FI+ N+L + +D+ Sbjct: 776 QLWETTMDPAVRRLLKVQIDDAIAADEIFTTLMGDNVEPRRAFIEGNALYARNIDV 831 >gi|33603961|ref|NP_891521.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50] gi|33568937|emb|CAE35351.1| DNA gyrase subunit B [Bordetella bronchiseptica RB50] Length = 817 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +N+ Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L G+ D I VT++ D S +V+DNGRGIPTD+HK E G SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL TG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V++ L+D+R + + GG++ FV Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+ Sbjct: 238 YINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR + Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+I+KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +YI +PPLY + G+ +Y+KD++ +++ +L + + I L Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647 + D +I D + + E D E + A +L++ L+ + Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655 Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + + + V+R+ G VL+ + + Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAI 715 Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + + ++ + + +G+S QRYKGLGEMN QLWETT++P R L Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 LRV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816 >gi|294665502|ref|ZP_06730785.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604705|gb|EFF48073.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 814 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 411/816 (50%), Positives = 538/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E Q + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAKGDQHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWH-GSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + GS N LV G + VL + S + R S + + ++ Sbjct: 659 LRFDPGSDNAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|78045560|ref|YP_361735.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033990|emb|CAJ21635.1| DNA gyrase subunit B [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 832 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 408/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 19 MTDEQNIPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 78 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 79 ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 138 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 139 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 197 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 198 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 256 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 257 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 316 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 317 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 376 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 377 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 436 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 437 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 496 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 497 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 556 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 557 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 616 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E DQ + + NR + + Sbjct: 617 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 676 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + N + ++ R G + VL + S + R S + + ++ Sbjct: 677 LRFDPGSENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 736 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 737 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 796 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 797 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 832 >gi|325926216|ref|ZP_08187574.1| DNA gyrase subunit B [Xanthomonas perforans 91-118] gi|325543398|gb|EGD14823.1| DNA gyrase subunit B [Xanthomonas perforans 91-118] Length = 814 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 408/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNIPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E DQ + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPGSENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|148261868|ref|YP_001235995.1| DNA gyrase, B subunit [Acidiphilium cryptum JF-5] gi|326405373|ref|YP_004285455.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301] gi|146403549|gb|ABQ32076.1| DNA gyrase subunit B [Acidiphilium cryptum JF-5] gi|325052235|dbj|BAJ82573.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301] Length = 812 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 432/802 (53%), Positives = 563/802 (70%), Gaps = 21/802 (2%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA SI +L+GLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ G+AD + V LN Sbjct: 24 YDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMGFEIIDNAVDEAQAGFADRVDVVLN 83 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS TV+DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SYKVSGGLHGVG +VVN Sbjct: 84 GDGSMTVTDNGRGIPTDIHPEEGISAAEVVLTRLHAGGKFNQNSYKVSGGLHGVGAAVVN 143 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS W+++RI R+G + + F NG PL V G++ + TGT VTF PS+ F+ +F++ Sbjct: 144 ALSEWMEVRIWRDGKEHLIRFENGDTVAPLAVVGASEHGTGTSVTFRPSAATFTRTEFDF 203 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + RLREL+FLNS + I+L D+R +E Y+GG+ FVS+LDR K L P+ Sbjct: 204 AIYERRLRELAFLNSGLTINLRDERHSAVQEAHFRYEGGLVEFVSWLDRAKTQLFSPPVT 263 Query: 250 IQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I ++ A+ WND YHE +LCFTNNI Q+DGGTHL+G RSALTR ++ Y E Sbjct: 264 AFKDDAPGGIKVEFALAWNDTYHETMLCFTNNIVQRDGGTHLAGFRSALTRVVSKYAESL 323 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ +V++ V D L W Sbjct: 324 GKKDS--LSLSGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPLVQAAVADALEHW 381 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 E HP E ++I +KV+DA+ R+AAR+AR+LTRRKGVLDI++LPGKLADC ERDP KSE+ Sbjct: 382 FETHPKEGRLIAQKVMDAASAREAARKARELTRRKGVLDISTLPGKLADCQERDPAKSEI 441 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486 F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+ML S EIGTLITALGTGIG Sbjct: 442 FIVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGIGP 501 Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 Q FDI+KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQM LI G LYI +PPLY Sbjct: 502 AEPEQGGFDISKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMRELIERGHLYIAQPPLY 561 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + RG +Y+KD++++E YL ++L ++ I DL + + + I Sbjct: 562 RVKRGNEERYLKDDDAMEAYLFERAL---------AEVAIEGVDLAAELPFMREAARRIA 612 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 D + ++EQA I+G+ E LA LA RL+ I+ +E+ W +++ + Sbjct: 613 DLARDIPVAYVEQAAIAGLLGA--TPEAAGDLAPVLAARLDAISLPNERGWMVAVDAQGV 670 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + R RGV E+ ++ + + S +++ S R+E + T L + GP SL Sbjct: 671 TMARTVRGVAERHTIDLAMLRSSDARWLAERSGRLEARFATAPQLAHGTAAQPVRGPSSL 730 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 ++T+F IGRKG+S+QR+KGLGEMN QLW+TTL+P TR LL+V+I DA +D +FS LMG Sbjct: 731 IETLFGIGRKGLSIQRFKGLGEMNPDQLWQTTLDPTTRRLLQVRIGDAEDSDQIFSTLMG 790 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFI N+L LD+ Sbjct: 791 DVVEPRREFIVGNALKVANLDV 812 >gi|33598882|ref|NP_886525.1| DNA gyrase subunit B [Bordetella parapertussis 12822] gi|33575012|emb|CAE39678.1| DNA gyrase subunit B [Bordetella parapertussis] Length = 817 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +N+ Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L G+ D I VT++ D S +V+DNGRGIPTD+HK E G SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL TG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V++ L+D+R + + GG++ FV Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+ Sbjct: 238 YINRSKSVLHPNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR + Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+I+KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +YI +PPLY + G+ +Y+KD++ +++ +L + + I L Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647 + D +I D + + E D E + A +L++ L+ + Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655 Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + + + V+R+ G VL+ + + Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRDADYAVLAKSAKTFLGLVGAGAI 715 Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + + ++ + + +G+S QRYKGLGEMN QLWETT++P R L Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 LRV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816 >gi|323524380|ref|YP_004226533.1| DNA gyrase subunit B [Burkholderia sp. CCGE1001] gi|323381382|gb|ADX53473.1| DNA gyrase, B subunit [Burkholderia sp. CCGE1001] Length = 823 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 388/828 (46%), Positives = 536/828 (64%), Gaps = 30/828 (3%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTETNNTQPDNSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQK 112 GY + I V ++ D S +++DNGRG+PT D H E SAAE++MT LHAGGKF+Q Sbjct: 61 AGYCNDIQVIIHADNSISITDNGRGVPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQN 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLV 160 SYKVSGGLHGVGVS VNALS+WL+L ++R+G + M F G+ +P+ Sbjct: 120 SYKVSGGLHGVGVSCVNALSAWLRLTVRRDGKKHFMEFHRGVPQNRVLEEIDGVMTSPMQ 179 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 V G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L+D+RS + Sbjct: 180 VVGDTE-NRGTEVHFMADETIFGNVEYHYDILAKRIRELSFLNNGVRIRLLDQRSGKE-- 236 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + I G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 237 EDFAFVGGVKGFVEYINKTKSVLHPTIFHITGEKDGVGVEVAMQWNDSYNENVLCFTNNI 296 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR + Y+ +KK K GDD REG + VLS+K+P+P+FS Sbjct: 297 PQRDGGTHLTGLRAAMTRVLNKYIADHEVAKKAKVETSGDDMREGLSCVLSVKVPEPKFS 356 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR+ VE V L +L E P +AKII K++DA+ RDAAR+AR++TR Sbjct: 357 SQTKDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICSKIVDAARARDAARKAREMTR 416 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGVLD LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 417 RKGVLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 476 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR+DK+LSS++I TLITALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLLTF Sbjct: 477 EKARYDKLLSSEQIVTLITALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTF 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP +I G++YI +PPLY I GK +Y+KDE + +++ +L L ++ Sbjct: 537 FYRQMPEMIERGYIYIAQPPLYKIKAGKDERYLKDETEVNAHILKLALQGSELLPSENST 596 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ + L L ++ +D +E + + S+ S + A Sbjct: 597 AITGDALGELARAYLLAQAVVDRLSRLYDAGALEAVMDGVAIDLSSEAAAEASAKALEAK 656 Query: 641 RLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L A K E + + + V R G Q+ V + + + +N Sbjct: 657 -LRDDALKPEVTVTTMYDPVRELRSLKVARTHHGNQKISVFDEEFQLTADYQQLVNTANT 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + ++ S + + + + +S QRYKGLGEMN QLWETT++ Sbjct: 716 FKGLIGAGAVIKRGERSMAVSDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L + +D+ Sbjct: 776 PAVRRLLRVQIEDAIAADGIFTTLMGDDVEPRRAFIESNALRAGNIDV 823 >gi|289662280|ref|ZP_06483861.1| DNA gyrase subunit B [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 814 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E Q + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITNFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|21240778|ref|NP_640360.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306] gi|21106042|gb|AAM34896.1| DNA gyrase subunit B [Xanthomonas axonopodis pv. citri str. 306] Length = 814 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 411/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E DQ + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWH-GSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + GS N LV G + VL + S + R S + + ++ Sbjct: 659 LRFDPGSDNAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|311696597|gb|ADP99470.1| DNA gyrase subunit B-like protein [marine bacterium HP15] Length = 779 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 381/782 (48%), Positives = 516/782 (65%), Gaps = 11/782 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++E++DN+IDE+L GY I V ++ D S TV DNGRGIP DLH+ Sbjct: 1 MYIGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGVIIHPDESVTVKDNGRGIPVDLHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALSS L L I+R+ +YE + Sbjct: 61 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSTLTLTIRRDNKVYEQT 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ + PL G + +GT+V F+PS + F+ +F+YD L RLREL+FLNS V+I Sbjct: 121 YTHGVPNAPLAAVGET-DASGTKVHFIPSPETFTHIEFHYDILAKRLRELAFLNSGVRIR 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+RS + Y+GG+ AFV +L+ +K P+ + + D I+++++M+WND + Sbjct: 180 LTDERSGKE--EVFEYEGGLRAFVEHLNSNKTPINRVFHFNREREDGIAVEVSMQWNDAF 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 EN+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y+E+ KK K + GDD REG T++ Sbjct: 238 QENIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIEQEGLGKKAKVATSGDDAREGLTAI 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+K+PDP+FSSQTK+KLVSSEV++ VE + + +L+E P EAK+IV K+L+A+ R Sbjct: 298 ISVKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKLIVNKMLEAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AAR+ARD+TRRKG LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGR R+ QA Sbjct: 358 EAARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKTQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADVD Sbjct: 418 ILPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTF FRQM +I G ++I PPLY + RGK QY+KDE++ E YL +L Sbjct: 478 GSHIRTLLLTFLFRQMREIIERGHVFIAMPPLYKVKRGKQEQYLKDEKAKEAYLTQTALE 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 I + L + D + +I + +EQ + + E +E Sbjct: 538 GAQLYVNPEAPAIKDSALETMVKDYQAVMNMIGRLSRAYPAKVLEQMLQNVTLKPEHLKE 597 Query: 630 IN--VSLASKLANRLNFIAEKSEKSWHGSINNSD-----ILVKRIARGVQEQFVLEGSSI 682 ++L + L+ K +++ V G+ + V Sbjct: 598 EASVARWVARLGDGLDLDTRTGTKYTFSVTKDTERALYLPKVTIYVHGIPYEHVFSHEFF 657 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742 S ++ + K + LD + ++G+++QRYKGL Sbjct: 658 ESSSYAAIARMGETLDGLIEDGAYIQRGERKQPVLSFEGALDWLMKEAQRGLNIQRYKGL 717 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN QLWETT++P+TR +++V I DA AD +F+ LMGD+VEPRR FIQ N+L L Sbjct: 718 GEMNPEQLWETTMDPETRRMMKVTIEDAIAADQIFTTLMGDDVEPRRNFIQTNALEVTNL 777 Query: 802 DI 803 D+ Sbjct: 778 DV 779 >gi|289667646|ref|ZP_06488721.1| DNA gyrase subunit B [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 814 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 405/816 (49%), Positives = 538/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPSGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P E K I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEVKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDAAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI-----NVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E Q + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDHHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITNFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|94676498|ref|YP_588600.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219648|gb|ABF13807.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 802 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 398/806 (49%), Positives = 551/806 (68%), Gaps = 14/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L GY I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCQEILV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V DNGRGIPTD+H EE SAAEVIMT LHAGGKF+ SYKVSGGLHGVG+S Sbjct: 62 TIHEDNSISVQDNGRGIPTDIHIEERRSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L+L IKREG+IY + NG+ +PL + G++ TGT + F PS IF+ + Sbjct: 122 VVNALSEKLELFIKREGHIYYQIYYNGVPQSPLKIVGNS-IQTGTTIRFWPSFIIFTNKK 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS + ISL DKR+ + Y+GGI+AF+ YL+++KKP+ Sbjct: 181 EFQYEILAQRLRELSFLNSGLSISLHDKRNSQL--EHFHYQGGIKAFIKYLNKNKKPIHT 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + I + I++++AM+WND EN+ CFTNNIPQ +GGTHL G R+A+TR I Y++ Sbjct: 239 NIFYIAVDKCGINVEIAMQWNDSCQENIYCFTNNIPQPNGGTHLVGFRTAMTRTINYYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +KK+K GDD REG ++LS+K+PDP+FSSQTK+KLVSSEV++VVES +N+ Sbjct: 299 KEGYNKKNKIIATGDDAREGLIAILSVKVPDPKFSSQTKDKLVSSEVKAVVESLMNERFI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +A+II+ K++DA+ R+AAR+AR++ +RKG+LD+A LPGKLADC ERDPK + Sbjct: 359 EYLLEYPSDARIIINKIIDAARAREAARKAREINKRKGILDLAGLPGKLADCQERDPKFA 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS EI LIT LG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSNEIAALITVLGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++++KLRYH IIIMTDADVDG+HIRTLLLTFF+R MP +IH G ++I +PPLY + Sbjct: 479 GRNEYNLDKLRYHTIIIMTDADVDGSHIRTLLLTFFYRYMPDIIHRGHIFIAQPPLYKVR 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK QY+KDE+++E Y + ++ +IS L+ + D + K+I Sbjct: 539 KGKQEQYIKDEDAMEQYQTSIAIKGAQLHSNT--KIISGERLKTLVTDYYVVQKIINRME 596 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNF-----IAEKSEKSWHGSIN 658 + ++ + + +++++ + L+NRLN I+ + Sbjct: 597 RLFPRILLKNLMYYPILTKNQMEQVSLVTDWIASLSNRLNQQDQQGISYDFNVQENYIHK 656 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + + G+ ++L I S I ++I++ + + Sbjct: 657 LFEPKILVRNHGISADYLLNLDFIQSNDYSKMTILGSKIQDLMQPNTYIKRGEHHKFVQN 716 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +++ + R G+ +QRYKGLGEMN +QLWETT++P R++LRV + DA AD LF+ Sbjct: 717 FEQVVEWLAKESRHGLVVQRYKGLGEMNPTQLWETTMDPANRNILRVTVKDAIMADQLFT 776 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FIQEN+L +D+ Sbjct: 777 TLMGDAVEPRRVFIQENALKVKNIDV 802 >gi|325915698|ref|ZP_08178003.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937] gi|325538115|gb|EGD09806.1| DNA gyrase subunit B [Xanthomonas vesicatoria ATCC 35937] Length = 814 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPTTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P+ IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR ++SY+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSSYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLYT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E D + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVAQLQAEGDVHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENIAATLVAIRRHMGEEFTQVLPMGAFESGELRPLRDVSLALNDLIREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + ++G +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKTHAITSFAQAHAWLLEEAKRGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|84514650|ref|ZP_01002014.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53] gi|84511701|gb|EAQ08154.1| DNA gyrase subunit B [Loktanella vestfoldensis SKA53] Length = 774 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 421/775 (54%), Positives = 545/775 (70%), Gaps = 4/775 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM+YEV+DN IDE+L G+AD + V +N D S TV DNGRGIP +H+ Sbjct: 1 MYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADHVYVRINADSSVTVGDNGRGIPVGIHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVVNALS +L+LRI REG + Sbjct: 61 GEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSVVNALSDFLELRIWREGKEHYAR 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G L V G A GTEVTFL + FS +DF++ L+ RLREL+FLNS V+I Sbjct: 121 FEGGFTVESLRVVGDANGRKGTEVTFLAALTTFSNRDFDFHILEKRLRELAFLNSGVRII 180 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D R EP +FY+GG+ FV YLDR K PLM++PI + G RD+I +++AM WND Y Sbjct: 181 LEDLRPAEPLRNELFYEGGVREFVKYLDRSKTPLMETPIYVTGERDDIGVEVAMWWNDSY 240 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 +E VL FTNNIPQ+DGGTHL+G R ALTR I Y ++ +KK+K ++ GDD REG T V Sbjct: 241 NEMVLPFTNNIPQRDGGTHLAGFRGALTRAIIKYATETGITKKEKIALTGDDAREGLTCV 300 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEVR VE+ + + L+ W EE+P AK I+ K+++A Sbjct: 301 LSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPATAKSIISKIVEA-AAA 359 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 A R RRK +D+ KL DCSE+DP K+E+FLVEGDSAGGSA+ GR R QA Sbjct: 360 REAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRGTQA 419 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F I+KLRYHK+IIMTDADVD Sbjct: 420 ILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFKIDKLRYHKVIIMTDADVD 479 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 GAHIRTLLLTFFFRQMP LI G LYI +PPLY +TRG+S Y+KD+ ++++YLI Q + Sbjct: 480 GAHIRTLLLTFFFRQMPELIEGGHLYIAQPPLYKVTRGRSEVYLKDQAAMDEYLIEQGID 539 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + + I+ DLR +D+A ++ ++++ F ++ + +EQA I+G F + Sbjct: 540 GAML-RQGNGEEIAGADLRRIVDEARQLKRVLEAFPTHYPRHILEQAAIAGAFVPGVVEN 598 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 A ++A RL+ +A + E+ W G I + + + RI RGV+E L+G+ + S ++ Sbjct: 599 DLQGTADRVAQRLDLVALEWERGWQGRITQDKGMRLARILRGVEEVRTLDGTMLRSGEAR 658 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 F+ +++ Y +L+ I GP LL I G KG+S+QRYKGLGEMN Sbjct: 659 RTGTFTQSLQDVYNLPATLVRKDRSQLIHGPLDLLRAILEEGEKGLSLQRYKGLGEMNPD 718 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ N+L LD Sbjct: 719 QLWETTLDPDARTLLQVKVEDVAEADDLFTKLMGDVVEPRREFIQTNALNVENLD 773 >gi|291612475|ref|YP_003522632.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1] gi|291582587|gb|ADE10245.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1] Length = 809 Score = 879 bits (2271), Expect = 0.0, Method: Composition-based stats. Identities = 392/820 (47%), Positives = 524/820 (63%), Gaps = 28/820 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSDN-----YDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKV 116 D I V ++ D S +VSDNGRGIP + E SAAE+++T LHAGGKFNQ SYKV Sbjct: 56 CDDIKVIIHGDNSISVSDNGRGIPIGIKFDDKHEPKRSAAEIVLTVLHAGGKFNQNSYKV 115 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILDNPLVVTGS 164 SGGLHGVGVS VN LS WLKL R+G + + F NG+ +P+ G Sbjct: 116 SGGLHGVGVSCVNGLSEWLKLTTYRDGKKFGLEFVRGAVKDRHVEVQNGVDVSPVRELGE 175 Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 + N GTEV FL +IF + +F+Y+ L RLRELSFLN+ V+I LID+R+ + Sbjct: 176 S-NKRGTEVHFLADKEIFGLVEFHYEILAKRLRELSFLNNGVKIELIDQRTGKS--ENFA 232 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 Y GG+ FV Y+++ K L G +DNI++D+AM+WND Y E V CFTNNIPQ+D Sbjct: 233 YSGGVRGFVEYMNKSKTVLHPKCFEATGEKDNITVDVAMQWNDSYSEVVQCFTNNIPQRD 292 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH++GLR A+TR I Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK Sbjct: 293 GGTHMTGLRMAMTRVINKYIEDNELAKKAKVDTTGDDMREGLTCVLSVKVPDPKFSSQTK 352 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 +KLVSSEV+ V V L+ +L E+P++AKII K+++A+ RDAAR+AR+LTRRKGV Sbjct: 353 DKLVSSEVQPAVNEVVTQKLTDFLLENPVDAKIICGKIIEAARARDAARKARELTRRKGV 412 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 LD LPGKLADC E+DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERAR Sbjct: 413 LDGIGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERAR 472 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 F+K++SSQEI TLIT LGTGIG++ ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ Sbjct: 473 FEKLISSQEIATLITVLGTGIGKEEYNADKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQ 532 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 MP L+ G +YI +PPLY I +G+ +Y+KDE L+ Y++ +L+ I Sbjct: 533 MPELVERGHVYIAQPPLYKIKQGRDERYLKDEHELKTYMLGSALNNAAFFPALDATPIQG 592 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 L + +I ++ + E ++ S + Sbjct: 593 EALGEIAKQYFLAEAVIDRLTHFIAPEASHALLVLPALSLEDAEQAKKSAKLLEEACGSV 652 Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 I + E +G + + ++++ G L+ + S R ++ ++ Sbjct: 653 IRAQVETDINGEL---RLRLEKLYHGNYSVSYLDREFLHSGDYVQIRQTADALDGLISPT 709 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + K + ++ + +KG+S+QRYKGLGEMN QLWETT++ R LL+ Sbjct: 710 AYAMRGEQKRGVGSFKQAIEWLLEEAKKGVSIQRYKGLGEMNPEQLWETTMDVKNRILLK 769 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V+I DA AD++F+ LMGD VEPRR FI++N+L LD+ Sbjct: 770 VRIEDAVGADEIFTTLMGDVVEPRRAFIEKNALGVKNLDV 809 >gi|325922762|ref|ZP_08184496.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865] gi|325546758|gb|EGD17878.1| DNA gyrase subunit B [Xanthomonas gardneri ATCC 19865] Length = 814 Score = 878 bits (2269), Expect = 0.0, Method: Composition-based stats. Identities = 405/816 (49%), Positives = 544/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+++ NS+YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTEDQNTPTTPNSTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P+ IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPAVAIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSNYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E DQ + + NR + + Sbjct: 599 GANEAIARNAHRYDPALMTALIDLPPLDVAKLQAEGDQHPTLDKLQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINNSD--ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + +++ ++ R G + VL + S + R + ++ ++ Sbjct: 659 LRFDPATDSTSATLVAVRKHMGEEFTQVLPMGAFESGELRPLREVALALDGLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKTHPITSFAQAHAWLLEEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|33591698|ref|NP_879342.1| DNA gyrase subunit B [Bordetella pertussis Tohama I] gi|33571341|emb|CAE44818.1| DNA gyrase subunit B [Bordetella pertussis Tohama I] gi|332381117|gb|AEE65964.1| DNA gyrase subunit B [Bordetella pertussis CS] Length = 817 Score = 878 bits (2268), Expect = 0.0, Method: Composition-based stats. Identities = 380/821 (46%), Positives = 524/821 (63%), Gaps = 24/821 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +N+ Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L G+ D I VT++ D S +V+DNGRGIPTD+HK E G SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL TG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVAPLTATGPT-DKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V++ L+D+R + + GG++ FV Sbjct: 180 FLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGGTHL+ Sbjct: 238 YINRSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR + Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+I+KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVA 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +YI +PPLY + G+ +Y+KD++ +++ +L + + I L Sbjct: 537 RGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNEL 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--- 647 + D +I D + + E D E + A +L++ L+ + Sbjct: 597 ARQYVLADAVISRLSRVFDVAALSALAEGVEIDLE-DAERTKASAQRLSDALHAASPANG 655 Query: 648 -KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + + + V+R+ G VL+ + + Sbjct: 656 VEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAI 715 Query: 707 LICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + + ++ + + +G+S QRYKGLGEMN QLWETT++P R L Sbjct: 716 VARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRL 775 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 LRV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 776 LRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSAGNID 816 >gi|58579627|ref|YP_198643.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424221|gb|AAW73258.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae KACC10331] Length = 874 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 61 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 120 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 121 ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 180 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 181 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 239 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS+ IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 240 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 298 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 299 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 358 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 359 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 418 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 419 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 478 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 479 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 538 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 539 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 598 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 599 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 658 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E +Q + + NR + + Sbjct: 659 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 718 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 719 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 778 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 779 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 838 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 839 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 874 >gi|188574274|ref|YP_001911203.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518726|gb|ACD56671.1| DNA gyrase, B subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 814 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS+ IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E +Q + + NR + + Sbjct: 599 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|194363782|ref|YP_002026392.1| DNA gyrase subunit B [Stenotrophomonas maltophilia R551-3] gi|194346586|gb|ACF49709.1| DNA gyrase, B subunit [Stenotrophomonas maltophilia R551-3] Length = 819 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 408/821 (49%), Positives = 537/821 (65%), Gaps = 20/821 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD N +YDA+SI L+GL+AV+KRP MYIGD +GLHHM++EV+DN+IDE+ Sbjct: 1 MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110 L G+AD + VT++ DGS +VSDNGRGIPT H++ +SAAEV+MT LHAGGKF+ Sbjct: 61 LAGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVGVSVVNALS L + + + G Y+ F NG PL + G Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQGGFHYQQEFSNGAAVTPLAKL-ESTTKRG 179 Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T V F PS+ F +++YD L RLRELSFLNS V+I L D+R + R Y+GGI Sbjct: 180 TTVRFWPSTVAFHDNVEYHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +FV +L + K PL + I + G +NI +D+A++W D Y E + CFTNNIPQKDGGTHL Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R ALTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVS Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+VR VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +S ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 479 ASDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI PPLY I +GK Y+KD+ +L+ YL + ++ + + I L Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPATGEPGIEGLALEK 598 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648 + I+ +D+ +E V + +S + LA RLN + Sbjct: 599 LLLTYAAAQDSIERNAHRYDRNVLEALVDFVPMDMDSLRNAGEGEGLDALAKRLNQGSLG 658 Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 S E + +LV R G + VL S+ S + S+ + Sbjct: 659 SPRFTLELQEANEQRPAAVLVTRRHMGEELIQVLPLSAFESGELRAIHQASSLLHGLVRE 718 Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + I++ + + ++G +QR+KGLGEMN QLW+TT+NP+TR LL Sbjct: 719 GAIISRGAKSIEVDTFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +V+I DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819 >gi|92112113|gb|ABE73747.1| DNA gyrase subunit B [Azoarcus communis] Length = 832 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 384/837 (45%), Positives = 527/837 (62%), Gaps = 39/837 (4%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 MS+ ++YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DN+I Sbjct: 1 MSEPQNQPVQPAAENAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGK 108 DE+L G+ D I +T++ D S +V+DNGRGIP D H E SAAE++M LHAGGK Sbjct: 61 DEALAGHCDDIVITIHADNSISVADNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------ 156 FNQ SYKVSGGLHGVGVS VNALS WL+L ++R+G + M F GI Sbjct: 120 FNQNSYKVSGGLHGVGVSCVNALSKWLRLVVRRDGKKHFMEFNRGIPQDRVIEVVDGIET 179 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +PL + G + GTEV +L +IF +++YD L RLRELSFLN+ V+I L+D+R+ Sbjct: 180 SPLKIIGESS-KRGTEVHYLADEEIFGTVEYHYDILAKRLRELSFLNNGVKIRLLDQRTG 238 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG---------SRDNISIDLAMRWND 267 + + GG++ FV Y++R K L + G +++++AM+WND Sbjct: 239 KE--EDFAFAGGVKGFVEYINRTKTVLHPTVFYAAGTTRIPTGAGHDAELAVEVAMQWND 296 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 Y E VLC+TNNIPQ DGGTHL+GLR+A+TR I Y+E++ +KK K + GDD REG Sbjct: 297 SYAEQVLCYTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLA 356 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 VLS+KMPDP+F+SQTK KLVSSE R VE V + L +L E+P++AK I K+++A+ Sbjct: 357 CVLSVKMPDPKFASQTKMKLVSSEARPAVEEVVANKLGDFLLENPIDAKTICNKIVEAAR 416 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 RDAAR+AR++TRRKG+LD LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ Sbjct: 417 ARDAARKAREMTRRKGILDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKF 476 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPL+GKILNVE+ARFDK+L SQEI TLITALGT IG+D + KLRYH+II+MTDAD Sbjct: 477 QAILPLKGKILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDAD 536 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY I GK+ Y+KD+ L +L+ + Sbjct: 537 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKTELYIKDDHELNGHLLKLA 596 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 L + + I+ L L + +I+ D ++ + + + Sbjct: 597 LDGAVLTPREGAAPIADEALGGLARSYLLAEAVIRRLASYIDPEVLQAMLAHDIAISLDN 656 Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687 ++ + A ++ L + +H + ++R+ G ++ +E + S Sbjct: 657 EDEARASADRIQPHLPEGLKLY-AEYHEEAEGWRLTIERLHHGNRKFGWVEHDFLVSGDY 715 Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 + R S I + + +T + + + +GI+ QRYKGLGEMN Sbjct: 716 RTIRTASESIAGLIGPGAEIRRGEKRQLVTRFADAITWLLNEVERGITKQRYKGLGEMNP 775 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++P R LLRV+I DA AD++F+ L+GD VEPRR FI+ N+L + +D+ Sbjct: 776 DQLWETTMDPAVRRLLRVQIDDAIAADEIFTTLLGDNVEPRRAFIEGNALYAQNIDV 832 >gi|114797774|ref|YP_759281.1| DNA gyrase subunit B [Hyphomonas neptunium ATCC 15444] gi|114737948|gb|ABI76073.1| DNA gyrase, B subunit [Hyphomonas neptunium ATCC 15444] Length = 814 Score = 877 bits (2265), Expect = 0.0, Method: Composition-based stats. Identities = 450/798 (56%), Positives = 574/798 (71%), Gaps = 13/798 (1%) Query: 14 SIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGS 73 SI++LKGLDAV+KRP MYIGDTD SGLHHMIYEV+DN+IDE+L G+AD +TVTL DGS Sbjct: 22 SIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMIYEVVDNSIDEALAGHADHVTVTLFPDGS 81 Query: 74 CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSS 133 V+DNGRGIP LH EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS Sbjct: 82 AEVTDNGRGIPVGLHPSEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSD 141 Query: 134 WLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGN------DTGTEVTFLPSSDIFSVQD 186 WL+L I REG + + F G ++ PLV G + TGT + FL S+ F++ D Sbjct: 142 WLELTIHREGKEHFVRFVEGGRVEAPLVTRGPSPKRENGKAYTGTALRFLASTSTFTMTD 201 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++ TL+HRLREL+FLNS V+I D+R EP EI + Y+GG++AFV ++DR K L+ Sbjct: 202 YDRKTLEHRLRELAFLNSGVKIIFRDEREAEPYEIILEYEGGVKAFVQHIDRQKSSLIGE 261 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G +D I+++ A+ W D YHE+VLCFTNNIPQ+DGGTHL+G R ALTR I Y + Sbjct: 262 PIYVIGEKDGITVEAALEWTDTYHESVLCFTNNIPQRDGGTHLAGFRGALTRIINKYANE 321 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +KK K + GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VVES +N+ L Sbjct: 322 TGAAKKSKVEISGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVESLINEKLGE 381 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 W EE+P +A+II++KV++A+ R+AAR+AR+LTRRK LDI SLPGKLADC E+DP KSE Sbjct: 382 WFEENPKKAQIIMEKVVEAAAAREAARKARELTRRKSALDITSLPGKLADCQEKDPAKSE 441 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +F+VEGDSAGGSAKQGRSR+NQAILPLRGKILNVERARFDKML S ++GTLI ALG GIG Sbjct: 442 IFIVEGDSAGGSAKQGRSRDNQAILPLRGKILNVERARFDKMLGSDQVGTLIMALGAGIG 501 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP +I NG+LYI +PPLY +TR Sbjct: 502 RDEFNIAKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPEIIENGYLYIAQPPLYKVTR 561 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 G+S +YVKD+ LE YLI + + E + D I+ DLR + A + ++ Sbjct: 562 GRSERYVKDDAELESYLIEEGTTGETLILAD-GTQIAGADLREQVHQAAQFRASLRRLAL 620 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 IE A ++G A A RLN +AE+ E +W G ++++R Sbjct: 621 RAPADLIEHAALTGA----MKPGAGQDEADATAARLNRLAEEGEDTWVGRFVEGALVLQR 676 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDT 725 RGV E VL + + S + + ++E Y L G +I + GP +LL Sbjct: 677 TVRGVDENAVLPPALMASQDAIRLSDRAVGLQELYAEQSILRHEKGGEISVNGPSTLLGA 736 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + GRKG+ +QRYKGLGEMNASQLWETTL+ + R+LL+VK+ A +AD+LF++LMGD V Sbjct: 737 VLESGRKGLKIQRYKGLGEMNASQLWETTLDANARTLLQVKVEHADEADELFTKLMGDVV 796 Query: 786 EPRREFIQENSLPSALDI 803 EPRREFI+E +L + +D+ Sbjct: 797 EPRREFIEEFALEAEVDV 814 >gi|148651822|ref|YP_001278915.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1] gi|148570906|gb|ABQ92965.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1] Length = 884 Score = 876 bits (2264), Expect = 0.0, Method: Composition-based stats. Identities = 391/858 (45%), Positives = 530/858 (61%), Gaps = 63/858 (7%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y + +I++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I Sbjct: 30 EPEEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQID 89 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGV Sbjct: 90 IIIHEDESVSVMDNGRGIPIDVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV 149 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ I REG+ Y+ ++ +G+ D+ + N TGT++ F PS ++F+ Sbjct: 150 SVVNALSKKLEMNIWREGHHYQQTYSDGVPDSDIQELEKT-NKTGTQIRFYPSPEVFTGT 208 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F++D L RLRELSFLNS V+I L D+R+ + +KGG+ FV+Y++ K+ L Sbjct: 209 VFDFDILAKRLRELSFLNSGVRIVLTDERTDKQHV--FEHKGGLSEFVAYINSGKEGLND 266 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + D I ++ A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + SY++ Sbjct: 267 VFHFVSEQEDGIVVEAALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNSYMD 326 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + Sbjct: 327 NEKLVKKEKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFN 386 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP AK I K++DA+ RDAAR+AR+LTRRK LDIA LPGKLADC E+DP S Sbjct: 387 DYLLEHPGAAKSIANKIIDAARARDAARKARELTRRKTTLDIAGLPGKLADCQEKDPALS 446 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+GTLITALG GI Sbjct: 447 ELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGTLITALGCGI 506 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY I Sbjct: 507 GPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKIK 566 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G+ Y+KD+E+L+ YL++ ++ E + I+ L ++D + + Sbjct: 567 KGRQELYLKDDEALKAYLLSSTIDEMNLHISEDAPAITGQALETLLNDYNQTQLVKARLQ 626 Query: 606 PNHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIA----------------- 646 + ++ + + +L +L Sbjct: 627 IRYPAILLDALTHVPKLTTDMTYDFDAMTEWKQQLQAQLEHFGSDLRPSIELDNIHAPRT 686 Query: 647 --------------------------EKSEKSWHGSINNSD---------ILVKRIARGV 671 E + +SD + + Sbjct: 687 DELSEAAKDANNQFKFKIGAKVDSPNSDIEDAEVVEGQDSDMLSTKPQWLPRITIYVHNL 746 Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-----NGDKIKITGPCSLLDTI 726 + ++L+ S S + + I L + Sbjct: 747 AQHYLLDAGFFNSGEYARLMRLSKQWNTLLTESAFIRRDTTAGGSKDTLIRNFDHLWQQV 806 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 R+G+S+QRYKGLGEMNA QLW+TT++P+ R +L+V I DA AD LF LMGD+VE Sbjct: 807 MQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAIAADHLFMCLMGDDVE 866 Query: 787 PRREFIQENSLPS-ALDI 803 PRR+FI+EN+L LDI Sbjct: 867 PRRQFIEENALTVTNLDI 884 >gi|84621661|ref|YP_449033.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84365601|dbj|BAE66759.1| DNA gyrase subunit B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 814 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 406/816 (49%), Positives = 540/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I + +DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVAKILVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS+ IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSAAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLGTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLLLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E +Q + + NR + + Sbjct: 599 SANEAIARTAHRYDPALLTALIDLPPLDVETLQAEGNQHPALDALQAVLNRGTLGTARYQ 658 Query: 651 KSWHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + N + ++ R G + VL + S + R S + + ++ Sbjct: 659 LRFDPATENAPATLVAIRRHMGEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEMNA QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHSITSFAQAHAWLLDEAKKGRQVQRFKGLGEMNAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|326575517|gb|EGE25442.1| DNA gyrase subunit B [Moraxella catarrhalis 101P30B1] Length = 819 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 403/821 (49%), Positives = 535/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + F+ D++ A L N+LN + K Sbjct: 598 KDYSQSQAIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|285016825|ref|YP_003374536.1| DNA topoisomerase II (DNA gyrase subunit b) protein [Xanthomonas albilineans GPE PC73] gi|166362463|gb|ABY87167.1| DNA gyrase B [Xanthomonas albilineans] gi|283472043|emb|CBA14550.1| probable dna topoisomerase II (dna gyrase subunit b) protein [Xanthomonas albilineans] Length = 820 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 399/822 (48%), Positives = 532/822 (64%), Gaps = 21/822 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+D N +YDA+SI L+GL+AV+KRP MYIGD +GLHHM++EV+DN+IDE+ Sbjct: 1 MTDEQNTHANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110 L G+AD + VT++ DGS +VSDNGRGIP H + +SAAEV+MT LHAGGKF+ Sbjct: 61 LAGHADHVAVTIHADGSVSVSDNGRGIPVGKHAQMSKKLDREVSAAEVVMTVLHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVGVSVVNALS L L I + G Y+ + +G PL G Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSEKLLLDIFQGGFHYQQEYSHGAALAPLKQL-ETSAKRG 179 Query: 171 TEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T + F PS F+ +F+YD L RLRELSFLNS V+I L D+R E R Y+GGI Sbjct: 180 TTLRFWPSVKAFNNNVEFHYDILARRLRELSFLNSGVKIVLADER-GEGRRDDFHYEGGI 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +FV +L K PL + I + G + I++++A++W D Y E + CFTNNIPQKDGGTHL Sbjct: 239 RSFVEHLAHLKTPLHPNVISVSGEHNGITVEVALQWTDSYQETMYCFTNNIPQKDGGTHL 298 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R ALTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVS Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+VR VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC E+DP SELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILNVERARFD+ML Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRRNQAVLPLRGKILNVERARFDRML 478 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +S ++GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 479 ASDQVGTLITALGTGIGRDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI PPLY + +GK Y+KD+ +L YL + ++ + + I+ L Sbjct: 539 ERGYVYIGLPPLYRLKQGKQELYLKDDNALNVYLASSAVEGAALIPASGEPPITGAALEK 598 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNF 644 + ++ + +D + + + E ++ ++ + NR N Sbjct: 599 LLLLFASANETVVRNAHRYDPALLTALIDLPPLDVAQLEAEGERHPSLDALQMVLNRGNL 658 Query: 645 IAEKSEKSWHGSINNSD--ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + + + + +L+ R G + V+ + S + R + + Sbjct: 659 GSARYTLRFQPANEQRSATLLLVRRHMGEEMTQVVPMAVFESGELRALREVALALHGLVR 718 Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 ++ I+ +F +KG +QR+KGLGEMNA QLWETT+NPDTR L Sbjct: 719 EGAQIVRGNKTQAISSFAQAHAWLFEEAKKGRQIQRFKGLGEMNAEQLWETTVNPDTRRL 778 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+V+I DA AD +FS LMGD VEPRR+FI+EN+L LDI Sbjct: 779 LQVRIEDAVAADQIFSTLMGDVVEPRRDFIEENALKVANLDI 820 >gi|312794752|ref|YP_004027674.1| DNA gyrase subunit B [Burkholderia rhizoxinica HKI 454] gi|312166527|emb|CBW73530.1| DNA gyrase subunit B (EC 5.99.1.3) [Burkholderia rhizoxinica HKI 454] Length = 843 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 383/823 (46%), Positives = 543/823 (65%), Gaps = 25/823 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +++ ++SY SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L G+ Sbjct: 25 ANSSADNSYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHC 84 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 + I V ++ D S +V+DNGRGIPTD+ E SAAE++MT LHAGGKF+Q SYKVS Sbjct: 85 NDIHVVIHADNSISVTDNGRGIPTDIKRDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 144 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165 GGLHGVGVS VNALS WL+L ++R G + + F G++ +P+++ G Sbjct: 145 GGLHGVGVSCVNALSKWLRLTVRRGGKKHFLEFHRGVVQERVLEQRDGEQVSPMLLIGDT 204 Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 + GTEV FL IF +++YD L R+RELSFLN+ V+I L D+RS + + Sbjct: 205 E-NRGTEVHFLADDTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDQRSGKE--DDFAF 261 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 GG++ FV Y+++ K+ L Q+ + G +D + +++AM+WND ++ENVLCFTNNIPQ+DG Sbjct: 262 AGGVKGFVEYINKTKQTLHQNIFHVVGEKDGVGVEVAMQWNDSFNENVLCFTNNIPQRDG 321 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH++GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+FSSQTK+ Sbjct: 322 GTHMTGLRAAMTRVINKYITDTEIAKKAKIETTGDDMREGLSCVLSVKVPEPKFSSQTKD 381 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KLVSSEVR+ VE V L +L E P +AK+I K++DA+ RDAAR+AR++TRRKGVL Sbjct: 382 KLVSSEVRAPVEEVVAKALEQYLLETPNDAKVICGKIVDAARARDAARKAREMTRRKGVL 441 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 D LPGKLADC E+DP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+AR+ Sbjct: 442 DGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARY 501 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DK+LSS +I TLITALG GIG+D +++ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQM Sbjct: 502 DKLLSSDQIVTLITALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQM 561 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 P +I G++YI +PPL+ + GK +Y+KD+ L +++ +L + + I + Sbjct: 562 PEMIERGYVYIAQPPLFKLKAGKDERYLKDQHELNQHMLKLALHGAELVPSEGVAPIVGD 621 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 L L ++ +D+ +E AV+ GV + ++ A L ++L Sbjct: 622 ALGELARSYLLAQAVVDRLSKLYDEAALE-AVMDGVTIDLTSEDATRQSAQALQDKLRDS 680 Query: 646 AEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 A K + S + + ++R G + +++ + + + +N + Sbjct: 681 ALKPDVSVLPQYDAVRELRSLRIERRHHGNIKVSIIDEEFLLTADFQQLANTANTFKGLI 740 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 + + +T S + + + + +S QRYKGLGEMN QLWETT++P R Sbjct: 741 GVGAMIKRGERTMAVTDFKSAMKWLIADAERNVSKQRYKGLGEMNPEQLWETTMDPAVRR 800 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 801 LLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 843 >gi|326571722|gb|EGE21735.1| DNA gyrase subunit B [Moraxella catarrhalis BC8] Length = 819 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 403/821 (49%), Positives = 535/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + F+ D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|326560704|gb|EGE11072.1| DNA gyrase subunit B [Moraxella catarrhalis 46P47B1] gi|326563089|gb|EGE13362.1| DNA gyrase subunit B [Moraxella catarrhalis 12P80B1] gi|326574364|gb|EGE24307.1| DNA gyrase subunit B [Moraxella catarrhalis CO72] Length = 819 Score = 875 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 401/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|33519500|ref|NP_878332.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus] gi|33517163|emb|CAD83545.1| DNA gyrase subunit B [Candidatus Blochmannia floridanus] Length = 806 Score = 875 bits (2261), Expect = 0.0, Method: Composition-based stats. Identities = 395/806 (49%), Positives = 534/806 (66%), Gaps = 14/806 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SSYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE + GY + I VT Sbjct: 3 SSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEVISGYCNKILVT 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S +V D+GRGIPT LH+E GISAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 63 IHQDNSVSVKDDGRGIPTGLHEESGISAAEVIMTVLHAGGKFDNTNYKVSGGLHGVGVSV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186 VNALS L+L I+R+ IY+ F G +PL V G + +GT + F P+ IF + + Sbjct: 123 VNALSEKLELIIERDFKIYKQVFYLGKPKSPLSVVGESK-KSGTMIRFWPNLHIFTNKTE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L R +EL+FLNS V I L D R+ + + GGI+AF+ YL+ K P+ + Sbjct: 182 FQYEILARRFKELAFLNSGVSIILRDFRNNKE--DIFYCNGGIKAFIKYLNVKKTPIHSN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 G + I I +A++WND + E + FTNNIPQ+DGGTHLSGL+SA+TR I Y++K Sbjct: 240 IFYYSGYKGEIGIKVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAITRTIHFYIDK 299 Query: 307 SFGSKKDKRSVI-GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + V GDD REG +VLSI +P+P+FSSQTK+KL+SSEV++ VES + + L Sbjct: 300 EGYNNKKDKIVTMGDDVREGLVAVLSIYIPNPKFSSQTKDKLISSEVKTAVESLIYEKLI 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + E+P ++K I+ KV+ A+ R++AR+ RDL+RRKGV D + LPGKLADC E++P S Sbjct: 360 EFFLENPSDSKSIINKVISAARARESARKIRDLSRRKGVSDFSVLPGKLADCQEKNPVYS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSS E+ +LITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSPEVMSLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 GQ+ +++NKLRYH II+MTDADVDGAHIRTLLLTFF+R MP +I G ++I +PPLY + Sbjct: 480 GQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRYMPEIIDKGHIFIAQPPLYKVQ 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G QY+KDEE + Y I+ ++ IS+ L I + I K+I Sbjct: 540 KGNQSQYIKDEEEMYQYQISMAVRYACLYVDPYAPPISEEVLEQLIFERYLIQKIIIRME 599 Query: 606 PNHDKTFIEQAVISGVF-NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN----- 659 K + Q + V + ++V + K L +EK + I N Sbjct: 600 RQFPKELLNQLIFHSVLSEKQWSNYVDVEIWMKSLIELLKRSEKYGSHYSFIIRNNNKEN 659 Query: 660 -SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT 717 + +++ G+ + L I S+ + F ++ E L+ S I D+ KI Sbjct: 660 FFEPILRIRTYGIDTDYPLGIDFIKSYEYRKLVTFGKKMNELLLSNHSYIQYKNDRKKIN 719 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 ++ + RKG+ +QRYKGLGEMN QLWETT+NP R +L+V + DA +AD+LF Sbjct: 720 SFDQAIEWLMQESRKGLIIQRYKGLGEMNPDQLWETTMNPKNRCMLKVTVRDALEADNLF 779 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALD 802 S LMGD VEPRR FI++N+L + +D Sbjct: 780 STLMGDVVEPRRIFIEDNALKAKNVD 805 >gi|326578064|gb|EGE27924.1| DNA gyrase subunit B [Moraxella catarrhalis O35E] Length = 819 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 401/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNYYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPGEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPRLDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|326571823|gb|EGE21829.1| DNA gyrase subunit B [Moraxella catarrhalis BC7] Length = 819 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DTKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|71891809|ref|YP_277538.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795915|gb|AAZ40666.1| DNA gyrase, subunit B [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 804 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 389/804 (48%), Positives = 533/804 (66%), Gaps = 12/804 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S+YD+ SI+ILKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE++ GY I V Sbjct: 3 SAYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEAISGYCKKIVVI 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S +V D+GRGIPT +H+EEG+SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 63 IHQDHSVSVQDDGRGIPTGIHEEEGVSAAEVIMTILHAGGKFDNSNYKVSGGLHGVGVSV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQD 186 VNALS L+L IKR+ Y+ + G +PL + G + + +GT V F PS F+ + Sbjct: 123 VNALSERLELVIKRDFKTYKQVYCEGRPLSPLEIIGDSKH-SGTIVRFWPSLKTFTGKTE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F YD L R RELSFLNS + I L D R+ + GG++AFV YL +K P+ + Sbjct: 182 FQYDILARRFRELSFLNSGIVIILRDCRNNKE--ENFHCAGGVKAFVKYLSVNKTPIHPN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 G++ ISI++A++WND + E + FTNNIPQ+DGGTHL+GLR+A+TR + Y++K Sbjct: 240 IFYYLGNKGEISIEVALQWNDNFQEKIYSFTNNIPQRDGGTHLAGLRAAITRTMHFYMDK 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 ++K K IGDD REG ++LSIK+PDP+FSSQTK+KLVSSEV++ VES V + L Sbjct: 300 EGYNRKVKVVTIGDDAREGLVAILSIKIPDPKFSSQTKDKLVSSEVKTAVESLVYEKLIE 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + E+P+++K I+ KV+ A+ R+AAR+ RDLTRRKG+ + ++LPGKLADC E++P SE Sbjct: 360 FFLENPIDSKNIINKVIGAARAREAARKIRDLTRRKGLSEFSTLPGKLADCQEKNPVYSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML+SQE+ TLITALG GIG Sbjct: 420 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLTSQEVMTLITALGCGIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + ++ +KLRYH II+MTDADVDGAHIRTLLLTFF+RQMP +I G ++I +PPLY + + Sbjct: 480 PNEYNPDKLRYHNIIVMTDADVDGAHIRTLLLTFFYRQMPEIIERGHIFIAQPPLYKVQK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 G+ +Y+KDEE++ Y I+ ++ + L + + I K+I Sbjct: 540 GRQERYLKDEEAMSKYQISIAVGSSRFYINPDTPPLKGKILEQLVFEYYLIQKIIVRMEH 599 Query: 607 NHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSW-----HGSINN 659 K + + + V + E E L + L+ E H Sbjct: 600 QFPKILLNRLIYHSVLSEEQCYCYESVKIWMRSLVDSLSSFEEYGSSYDFVILKHHENEY 659 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +++ G+ +VL I S K F ++ E +L+ + + ++ Sbjct: 660 FEPILRIRTYGINIDYVLSIDFIKSHEYKKLVSFGMQMNELFLSDAYIEYGIYRKQVHSF 719 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 ++ + RKG+ +QRYKGLGEMN QLWETT+NP R +LRV I DA +AD LF+ Sbjct: 720 DQAMEWLMQESRKGLVIQRYKGLGEMNPDQLWETTMNPKNRCMLRVTIKDAIEADHLFTT 779 Query: 780 LMGDEVEPRREFIQENSLPS-ALD 802 LMGD VEPRR FI++N+L + +D Sbjct: 780 LMGDLVEPRRAFIEKNALKATNVD 803 >gi|300309349|ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gi|300072134|gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 875 bits (2260), Expect = 0.0, Method: Composition-based stats. Identities = 384/828 (46%), Positives = 528/828 (63%), Gaps = 31/828 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L GY Sbjct: 9 TNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCS 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 I VT++ D S +++DNGRGIPT D H E SAAE++MT LHAGGKF+Q SYKVS Sbjct: 69 EIHVTIHADNSISITDNGRGIPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQNSYKVS 127 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165 GGLHGVGVS VNALS LKL I+R+G ++ M F GI+ +P+ V G + Sbjct: 128 GGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPIKVIGES 187 Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 + GTEV F +IF+ +F+Y+ L R+RELSFLN+ V I L D+R+ + + Sbjct: 188 -DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE--EDFAF 244 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNI 280 +GG FV Y++++K L + + G + I++D++M+WND ++E VLCFTNNI Sbjct: 245 EGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNI 304 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+E++ +KK K + GDD REG T VLS+K+P+P+FS Sbjct: 305 PQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFS 364 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AAR+AR+LTR Sbjct: 365 SQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTR 424 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGV+D L KLADC ERDP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 425 RKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 484 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+ARF+KMLSS++I TLI LGT IG D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 485 EKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTL 544 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP+L+ G +YI +PPLY + GK +Y+KD+ Y++ +L++ + Sbjct: 545 FYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAP 604 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ L + +I D++ ++ + GV + E + A +L Sbjct: 605 AITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKK 664 Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 +N I + + + R G + V++ + + + + Sbjct: 665 AINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAETFKGL 724 Query: 701 YLTILSLICN-GDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 ++ G+K K IT + + +G++ QRYKGLGEMN QLWETT++ Sbjct: 725 IRKGATVARGQGEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMD 784 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LL+V+I DA AD +F LMGD+VEPRR FI+ N+L + +D+ Sbjct: 785 PTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >gi|294085122|ref|YP_003551882.1| DNA gyrase,subunit B [Candidatus Puniceispirillum marinum IMCC1322] gi|292664697|gb|ADE39798.1| DNA gyrase, B subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 816 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 440/820 (53%), Positives = 569/820 (69%), Gaps = 21/820 (2%) Query: 1 MSDNIQNS-----------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVL 49 MS++ + + Y A+SI++L+GLDAV+KRP MYIGDTD SGLHHM+YEV+ Sbjct: 1 MSEDEKTNIPDQAAAAVDGDYGAESIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVV 60 Query: 50 DNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF 109 DNAIDE+L G+ D++ V LN DGS +V+DNGRGIP D+H EEG+SAAEVIMT+LHAGGKF Sbjct: 61 DNAIDEALAGHCDLVQVVLNADGSISVTDNGRGIPVDIHHEEGVSAAEVIMTQLHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT 169 + SYKVSGGLHGVGVSVVNALS WL+L I R G +EM F G D L G A T Sbjct: 121 DNNSYKVSGGLHGVGVSVVNALSEWLRLTIFRNGRKHEMMFKMGEADGALADMGDAEGQT 180 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT VTF PS DIFS +F++ TL+HRLREL+FLNS V+I + D R+ E R F++GG+ Sbjct: 181 GTHVTFYPSLDIFSSIEFDFTTLEHRLRELAFLNSGVRIKMTDNRTSEERVSEFFFEGGL 240 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 EAFV++L+R + + + I RD+I+++LA+ W D +HEN LCFTNNIPQ+DGG HL Sbjct: 241 EAFVTWLNRSRSEMHPTITAIS-QRDDITVELALAWTDSFHENTLCFTNNIPQRDGGAHL 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R A+TR + +Y + S +KK+K + G+D REG T+++S+K+PDP+FSSQTK+KLVS Sbjct: 300 AGFRGAMTRVVNNYAQSSGIAKKEKVQLTGEDSREGLTAIVSVKVPDPKFSSQTKDKLVS 359 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SEVR VVE V D L+ W EEHP EAK IV K +A+ R+AAR+ARDLTRRKGV+DIAS Sbjct: 360 SEVRPVVEQAVADCLNQWFEEHPAEAKKIVSKAYEAAAAREAARKARDLTRRKGVMDIAS 419 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC ERDP KSE+FLVEGDSAGGSAKQGR R NQAILPLRGKILNVERAR DKML Sbjct: 420 LPGKLADCQERDPAKSEIFLVEGDSAGGSAKQGRDRANQAILPLRGKILNVERARLDKML 479 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SS EIGTLITA+G G+G ++K+RYHKI+IMTDADVDG+HIRTLLLTFFFR M LI Sbjct: 480 SSAEIGTLITAIGAGVGNTEMQLDKVRYHKIVIMTDADVDGSHIRTLLLTFFFRHMRPLI 539 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G+LYI +PPL+ RG+S Y+KD+ L+ YL+ L + + + D ++ DLR+ Sbjct: 540 EQGYLYIAQPPLFRAKRGQSEVYLKDQRELDIYLMTAGLKDTVLVV-DGGSQMAGPDLRD 598 Query: 590 FIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 ++A+ +LI+ ++ +EQA I+G+ + A+ LA RL + ++ Sbjct: 599 VTNNAVTASRLIEQITRQVGNRDVVEQAAIAGLMKSATLDSA--DAATYLATRLENVVDE 656 Query: 649 SEKSWHGSINN----SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 EK W GSI + I+V+R RG+ E++V++ + + + +++ Y Sbjct: 657 LEKGWQGSIEDTVHGKAIVVQRRLRGITEKYVIDRRIVGLPEAVQLDSMAPHLQQIYAKF 716 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 +L I GP L +F GRKG + RYKGLGEMN QLWETTL+PD R+ L+ Sbjct: 717 ATLTGTSQNTIIHGPSDLAQLVFQTGRKGAQISRYKGLGEMNPDQLWETTLDPDQRTFLQ 776 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V I AD+ FS LMG+ VE RR FIQ N+L LDI Sbjct: 777 VVIEHEEDADNAFSTLMGEAVEERRNFIQTNALRVANLDI 816 >gi|294627435|ref|ZP_06706019.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598256|gb|EFF42409.1| DNA gyrase subunit B [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 814 Score = 874 bits (2259), Expect = 0.0, Method: Composition-based stats. Identities = 411/816 (50%), Positives = 539/816 (66%), Gaps = 15/816 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQNTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKILADGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 PS IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPSVAIFSDVEFHYDILARRLRELSFLNSGVKITLIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+A Sbjct: 239 LAQLKSPLHPNVISVTGEHNGIMVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSTYIEQNGIAKQAKVALTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASNAVEGAALIPATDEPPITGEALEKLLMLFT 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFN-----CESDQEINVSLASKLANRLNFIAEKSE 650 ++ I +D + + + E DQ + + NR + + Sbjct: 599 SANEAIARNAHRYDPALLTALIDLPPLDVEKLQAEGDQHPTLDALQAVLNRGTLGTARYQ 658 Query: 651 KSWH-GSINNSDILVKRIARGVQE-QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + GS N LV +E VL + S + R S + + ++ Sbjct: 659 LRFDPGSDNAPATLVAIRRHMAEEFTQVLPMGAFESGELRPLREVSLALHDLVREGAQIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 IT + +KG +QR+KGLGEM+A QLWETT+NPDTR LL+V+I Sbjct: 719 RGNKSHPITSFAQAHAWLLDEAKKGRQVQRFKGLGEMSAEQLWETTVNPDTRRLLQVRIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 DAVAADQIFSTLMGDVVEPRRDFIEDNALKVSNLDI 814 >gi|124483570|emb|CAM32658.1| DNA gyrase subunit B, type II topoisomerase, ATPase activity, protein [Herbaspirillum seropedicae] Length = 832 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 381/828 (46%), Positives = 525/828 (63%), Gaps = 31/828 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L GY Sbjct: 9 TNSAQQSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGYCS 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 I VT++ D S +++DNGRGIPT D H E SAAE++MT LHAGGKF+Q SYKVS Sbjct: 69 EIHVTIHADNSISITDNGRGIPTGLKMDDKH-EPKRSAAEIVMTELHAGGKFDQNSYKVS 127 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165 GGLHGVGVS VNALS LKL I+R+G ++ M F GI+ +P+ V G + Sbjct: 128 GGLHGVGVSCVNALSKKLKLTIRRDGKVHAMEFAKGIVQNRELEMVDGVQVSPIKVIGES 187 Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 + GTEV F +IF+ +F+Y+ L R+RELSFLN+ V I L D+R+ + + Sbjct: 188 -DKRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIKLTDQRTGKE--EDFAF 244 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNI 280 +GG FV Y++++K L + + G + I++D++M+WND ++E VLCFTNNI Sbjct: 245 EGGTRGFVEYINKNKSILNPTIFQATGEKQSDQGTMITVDVSMQWNDAFNEQVLCFTNNI 304 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+E++ +KK K + GDD REG T VLS+K+P+P+FS Sbjct: 305 PQRDGGTHLTGLRAAMTRVINKYIEENDLAKKAKVEISGDDMREGLTCVLSVKVPEPKFS 364 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AAR+AR+LTR Sbjct: 365 SQTKDKLVSSEVRGPVEEIVAKTLTDFLAEKPNDAKIICGKIVEAARAREAARKARELTR 424 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGV+D L KLADC ERDP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 425 RKGVMDGLGLSSKLADCQERDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 484 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+ARF+KMLSS++I TLI LGT IG D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 485 EKARFEKMLSSEQITTLIATLGTSIGADEFNPDKLRYHRIIIMTDADVDGAHIRTLLLTL 544 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP+L+ G +YI +PPLY + GK +Y+KD+ Y++ +L++ + Sbjct: 545 FYRQMPALVERGHIYIAQPPLYKVKAGKDERYLKDDFEEAQYMMQIALNDAEIKPAEDAP 604 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 I+ L + +I D++ ++ + GV + E + A +L Sbjct: 605 AITGEALVELARQYNTANAIIMRLTRAIDESALDAIMTGGVVLKMDNLEQATATAEELKK 664 Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 +N I + + + R G + V++ + + + + Sbjct: 665 AINDINIDVQARMDEHSEKVALHIHRRQHGNIKATVIDADFVSGPDYQVLSTAAETFKGL 724 Query: 701 YLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 ++ + IT + + +G++ QRYKGLGEMN QLWETT++ Sbjct: 725 IRKGATVARGQCEKRKESVITDFRQAMAWLRDEAERGVNKQRYKGLGEMNPEQLWETTMD 784 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LL+V+I DA AD +F LMGD+VEPRR FI+ N+L + +D+ Sbjct: 785 PTVRRLLKVQIEDAIAADQIFMTLMGDDVEPRRAFIESNALQAGNIDV 832 >gi|326569033|gb|EGE19102.1| DNA gyrase subunit B [Moraxella catarrhalis BC1] Length = 819 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 403/821 (49%), Positives = 534/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + F+ D++ A L N+LN + K Sbjct: 598 KDYSQSQAIKAHLQSKYPSHLLDALTLLPKFDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|71064585|ref|YP_263312.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4] gi|71037570|gb|AAZ17878.1| DNA gyrase subunit B [Psychrobacter arcticus 273-4] Length = 871 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 388/843 (46%), Positives = 530/843 (62%), Gaps = 50/843 (5%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y + I++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + Sbjct: 32 SDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDII 91 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 92 IHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 151 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L++ I REG + ++ +G+ D+ + A + TGT++ F PS+D+F+ F Sbjct: 152 VNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQ-MEATDQTGTQIRFYPSNDVFTGTIF 210 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 YD L RLRELSFLNS V+I L D+R + E +KGG+ FVSY++ K + Sbjct: 211 EYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVF 268 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ Sbjct: 269 HFISNQEDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRE 328 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 KK+K GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + + Sbjct: 329 NLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDY 388 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L+E+P K+I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL Sbjct: 389 LQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSEL 448 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG Sbjct: 449 YIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGP 508 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G Sbjct: 509 DEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKG 568 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 + Y+KD+E+L+ YL++ ++ I+ L ++D + + Sbjct: 569 RQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIR 628 Query: 608 HDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE------------------ 647 + ++ + + + D++ + L +L Sbjct: 629 YPAVLLDALTHTPKLSTDMTYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKN 688 Query: 648 ---------------KSEKSWHGSINNSDI------LVKRIARGVQEQFVLEGSSIFSFG 686 + E+ I + + ++L+ S I S Sbjct: 689 MDAAAADLLGMKPVVEVEEGNSSEAEAPSIKAQWLPRITVYVHQLAHHYLLDASFINSGE 748 Query: 687 SKYKRIFSNRIEENYLTILSLICN-----GDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 S + I + L + R+G+++QRYKG Sbjct: 749 YTKLLRLSAEWNTLLDVDAFIRREATAGTSKDIPVRDFDYLWQQMMLDARRGLAIQRYKG 808 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMNA QLW+TT++P+ R +LRV I DA AD +F+ LMGD VEPRR FI+EN+L Sbjct: 809 LGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSN 868 Query: 801 LDI 803 LDI Sbjct: 869 LDI 871 >gi|163751706|ref|ZP_02158925.1| DNA gyrase, B subunit [Shewanella benthica KT99] gi|161328445|gb|EDP99601.1| DNA gyrase, B subunit [Shewanella benthica KT99] Length = 781 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 389/784 (49%), Positives = 519/784 (66%), Gaps = 13/784 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM++EV+DN+IDE+L G+ I + ++ DGS +V D+GRGIP D+H Sbjct: 1 MYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCSEIVIIIHTDGSVSVKDDGRGIPVDIHP 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L+L I+R G +YE Sbjct: 61 EEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLQLIIRRNGKLYEQF 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQI 208 + G+ D P+ G A TGTE+ F PS F + +F++D L R+RELSFLNS V I Sbjct: 121 YTMGVPDAPIKEIGDAT-STGTELRFWPSHKTFTNNIEFHFDILVKRVRELSFLNSGVGI 179 Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWND 267 LID+R + R+ Y+GGI AFV YL+ +K P+ + RD+ I++++AM+WND Sbjct: 180 RLIDER--DNRDEFFEYQGGISAFVDYLNINKTPVNKDVFHFIHERDDGITVEVAMQWND 237 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 GY EN+ CFTNNIPQ+DGGTHL+G R ALTR + +Y+E+ +KK K S GDD REG T Sbjct: 238 GYQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNAYMEREGYNKKGKTSATGDDAREGLT 297 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + L +L EHP EA++IV K++DAS Sbjct: 298 AVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEKLGDYLMEHPTEARLIVGKIIDASR 357 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R+AAR+AR++TRRKG LD+ LPGKLADC E+DP SE+++VEGDSAGGSAKQGR+R+N Sbjct: 358 AREAARKAREMTRRKGALDLGGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRNRKN 417 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG D +D +K RYH I+IMTDAD Sbjct: 418 QAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKTRYHNIVIMTDAD 477 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDG+HIRTLLLTFFFRQMP LI G++YI +PPLY + +G+ QY+KDE +L ++L N + Sbjct: 478 VDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKKGRQEQYLKDELALTEFLTNLA 537 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES- 626 L IS L + +I+ + + E+ + + + Sbjct: 538 LDGGELHSSADAPAISGVPLEKLVYQYREIETIFARLEQRYPTLLTERMLYHPALDADML 597 Query: 627 -DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 D+ L K+E V G+ ++ Sbjct: 598 ADEAKVKQWCDAFVADLTEKESGGVIYKAEPFMDPERKVYLPNVHIRKHGIDTSYLFTYE 657 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + S + + +E + + +I+ L+ + + R+G+ +QRYK Sbjct: 658 FLNSSDYERMTKLAEALEGLIVEGGFIKRGERMKEISTFVEALNWLMNDSRRGLYIQRYK 717 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++P++R +L V I DA AD LF+ LMGD+VEPRR+FI++N+L Sbjct: 718 GLGEMNPEQLWETTMDPESRRMLVVTIEDAIGADQLFTCLMGDQVEPRRKFIEDNALNVA 777 Query: 800 ALDI 803 LD+ Sbjct: 778 NLDV 781 >gi|326561746|gb|EGE12081.1| DNA gyrase subunit B [Moraxella catarrhalis 7169] Length = 819 Score = 873 bits (2256), Expect = 0.0, Method: Composition-based stats. Identities = 402/821 (48%), Positives = 533/821 (64%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPRLDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|326562313|gb|EGE12639.1| DNA gyrase subunit B [Moraxella catarrhalis 103P14B1] Length = 819 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSAIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|269799058|gb|ACZ43807.1| DNA gyrase subunit B [Moritella viscosa] Length = 781 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 394/789 (49%), Positives = 527/789 (66%), Gaps = 17/789 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 57 CTDIVVTIHDDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I R G I+ ++ +G+ D P+ TG + TGTE+ F PS + Sbjct: 117 HGVGVSVVNALSEKLELTIFRHGKIHNQTYRHGVPDGPMAETG-VIDGTGTELRFWPSHE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV YL+ +K Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y+EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L+ +L E+P EA +V K++DAS R+AAR+ARD+TRRKG LD+A LPGKLADC Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKARDMTRRKGALDLAGLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI + Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK +Y+KD+ L YL +L + I L + ++ KI+ Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDDAGLFVNADAPAIRGAALEDLVNGYRKIE 594 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651 L+ + K F + + V E D+ + A +L L + Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + ++ G+ + S I + Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGE 712 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++T L+ + + ++G +QRYKGLGEMN SQLWETT++P+TR +L+V+I DA Sbjct: 713 KSREVTNFVEALNWLMAESKRGSYIQRYKGLGEMNPSQLWETTMDPETRRMLQVRIEDAV 772 Query: 772 QADDLFSRL 780 AD LF+ L Sbjct: 773 AADQLFTTL 781 >gi|103488449|ref|YP_618010.1| DNA gyrase, B subunit [Sphingopyxis alaskensis RB2256] gi|98978526|gb|ABF54677.1| DNA gyrase subunit B [Sphingopyxis alaskensis RB2256] Length = 858 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 440/848 (51%), Positives = 569/848 (67%), Gaps = 49/848 (5%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L G+ Sbjct: 14 AKQPNANAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHC 73 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVS 117 D+I +TLN DGS +V DNGRGIPTD+H EEG+SAAEVIMT+LHAGGKF + +YKVS Sbjct: 74 DLILITLNSDGSVSVEDNGRGIPTDIHAEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVS 133 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFL 176 GGLHGVGVSVVNALS WL+L I R+G + M F +G PL V G A GT VTF Sbjct: 134 GGLHGVGVSVVNALSEWLELTIWRDGQEHWMRFEHGDAVAPLRVNGPAPAGKKGTRVTFQ 193 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 S+D F +F+++ L+HR REL+FLNS V+I L+D R E +FY+GGI AFV Y Sbjct: 194 ASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRIKLVDARHAEHVSHDLFYEGGIAAFVKY 253 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR+K PL+ PI I RD I ID+A+ WND Y+ENVLCFTNNIPQ+DGGTHL+ R+A Sbjct: 254 LDRNKTPLLPDPIAISSERDGIGIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAA 313 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y EKS KK+K S+ G+D REG T+++S+K+PDP+FSSQTK+KLVSSEVR Sbjct: 314 LTRTLNGYGEKSGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQP 373 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +ES + D ++ WLEE+P AK +++KV+DA+ R+AA++AR+LTRRKG +DIASLPGKLA Sbjct: 374 LESLMADRMTEWLEENPAYAKAVIQKVVDAAAAREAAKKARELTRRKGAMDIASLPGKLA 433 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ERDP K ELFLVEGDSAGGSAKQGR R QAILPL+GKILNVERARFD+++SS+E+G Sbjct: 434 DCQERDPAKCELFLVEGDSAGGSAKQGRDRHVQAILPLKGKILNVERARFDRIISSKEVG 493 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQMP +I G LY Sbjct: 494 TLIQALGTGI-RDEFNIEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPEIIEKGHLY 552 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + +G+S Y+KD+ +LE+YL++ + + + G S DLR I+ Sbjct: 553 IAQPPLYKVAKGRSEVYLKDDSALENYLVDGGID--ALMLETTGGARSGADLRGLIEHGR 610 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----SEK 651 ++ L++ H+ +E ++G + D + A + A LN +E Sbjct: 611 RLRALMRYVPRGHNYGLVEALALNGALDPALDSAGRTAAAVRAAEWLNAAERALTGGAEA 670 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 W + +++ RGV + ++ + + S ++ + E Y L+ Sbjct: 671 KWTITAAGGGYTLEKRWRGVSDHHAIDAAFLASQEARRLHTLAAEQAETYAHPARLVKGS 730 Query: 712 -----------------------------------DKIKITGPCSLLDTIFSIGRKGISM 736 IT P LL+ IF+ RKG+++ Sbjct: 731 SAAALAADAAALAATEAAEDDAEASDGDLPAATARKVTPITRPSELLEAIFAHSRKGLAI 790 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 RYKGLGEMNA QLWETTL+P RSLLRV+ A A ++F RLMGDEVEPRR+FIQ N+ Sbjct: 791 SRYKGLGEMNAEQLWETTLDPSNRSLLRVEAEQADIAHEIFERLMGDEVEPRRDFIQTNA 850 Query: 797 LPS-ALDI 803 L LD+ Sbjct: 851 LSVANLDV 858 >gi|254522716|ref|ZP_05134771.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14] gi|219720307|gb|EED38832.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14] Length = 819 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 411/821 (50%), Positives = 536/821 (65%), Gaps = 20/821 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD N +YDA+SI L+GL+AV+KRP MYIGD +GLHHM++EV+DN+IDE+ Sbjct: 1 MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110 L G+AD + VT++ DGS +VSDNGRGIPT H++ +SAAEV+MT LHAGGKF+ Sbjct: 61 LAGHADHVAVTIHTDGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVGVSVVNALS L + + + G Y+ F NG PL G Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTPLAKL-ETTTKRG 179 Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T V F PS+ F +F+YD L RLRELSFLNS V+I L D+R + R Y+GGI Sbjct: 180 TTVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +FV +L + K PL + I + G +NI +D+A++W D Y E + CFTNNIPQKDGGTHL Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNNIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R ALTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVS Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+VR VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SS ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 479 SSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI PPLY I +GK Y+KD+ +L+ YL + ++ + + I L Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPAAGEPGIEGLALEK 598 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648 + I+ +D+ +E V + +S + LA RLN + Sbjct: 599 LLLAYAAALDSIERNAHRYDRNLLEALVDFVPMDMDSLRSAGEGEGLDALAKRLNQGSLG 658 Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 S E + +LV R G Q VL S+ S + S + Sbjct: 659 SPRFSLELQEANDERPAAVLVTRRHMGEQHIQVLPMSAFESGELRAIHQASKLLHGLIRE 718 Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 ++ I++ + + ++G +QR+KGLGEMN QLW+TT+NP+TR LL Sbjct: 719 GATISRGAKSIEVDSFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +V+I DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819 >gi|288959569|ref|YP_003449910.1| DNA gyrase subunit B [Azospirillum sp. B510] gi|288911877|dbj|BAI73366.1| DNA gyrase subunit B [Azospirillum sp. B510] Length = 827 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 435/817 (53%), Positives = 567/817 (69%), Gaps = 20/817 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q + Y A+SI +L+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+L GY D Sbjct: 14 EPQQADYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + V LN DGS TV DNGRGIPTD+H EEG+SAAEV+MT+LHAGGKFNQ SYKVSGGLHGV Sbjct: 74 VEVVLNADGSVTVRDNGRGIPTDIHPEEGVSAAEVVMTQLHAGGKFNQNSYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-------TGTEVTFL 176 GVSVVNALS L LRI R G + M F +G + PL G A +GTEVTF+ Sbjct: 134 GVSVVNALSETLDLRIWRGGRTWSMRFRHGNAEAPLADVGEAPMVPEKGKPLSGTEVTFM 193 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++ F+ +F++ TL+HRLREL+FLNS V++ L D R EP+ + Y+GG+EAFVS+L Sbjct: 194 PSAETFTNIEFDFATLEHRLRELAFLNSGVRLLLTDARGVEPKVQDLHYEGGLEAFVSWL 253 Query: 237 DRHKKPLMQSPIRIQGSRDN-----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 DR K L + I ++ R ++++ A++WND YHE LCFTNNIPQKDGGTHL+G Sbjct: 254 DRSKTALHKPAITLKSERPTEHGGVVTVECALQWNDSYHETTLCFTNNIPQKDGGTHLAG 313 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALTR I +Y +S +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSE Sbjct: 314 FRAALTRAINNYAAESGIAKKEKVNLSGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSE 373 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR VVE+ V + L+ + EEHP +A+ +V+KV++A+ R+AAR+AR++T RK L ++SLP Sbjct: 374 VRPVVEAVVGEALAQYFEEHPADARRVVQKVVEAAAAREAARKAREMT-RKSSLSMSSLP 432 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC ERDP SELF+VEGDSAGGSAKQGRSR++QAILPLRGKILNVERAR DKMLSS Sbjct: 433 GKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQSQAILPLRGKILNVERARLDKMLSS 492 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EIGTLI ALGTGI D F+ K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 493 AEIGTLIAALGTGI-SDEFNAEKARYHKIIIMTDADVDGSHIRTLLLTFFFRQMPDLIER 551 Query: 532 GFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G+LYI +PPLY I RG +Y+KD+ +LE+YL+ +L + D ++ L + Sbjct: 552 GYLYIAQPPLYRIKRGNAKERYLKDDRALEEYLVEAALGDLSVRLSD-GTLLIGEQLSSL 610 Query: 591 IDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 ++ A I + +EQA ++G + + + A+ A A + Sbjct: 611 VEQARTARPAIDTLSRKVGNAMVVEQAAVAGTLSAALADDKAAAEAAAQAVAERMNALDA 670 Query: 650 EKSWHGS-INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL-SL 707 + W G + V R RGV + + + + S ++ + ++ + T + Sbjct: 671 DGGWRGEALPQGGYAVIRARRGVTHRHLFDTDLLKSGEARRLDGLAADLKRVFGTAGQAF 730 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + +TGP +L D + +GR+G+++QRYKGLGEMN QLWETTL+P RSLL+V++ Sbjct: 731 EKQKETRALTGPVALFDVVMELGRRGVTIQRYKGLGEMNPDQLWETTLDPSKRSLLQVRV 790 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A QA+++FS LMGD VEPRREFIQ+N+L LD+ Sbjct: 791 NHADQAEEVFSTLMGDVVEPRREFIQDNALKVSNLDV 827 >gi|296112234|ref|YP_003626172.1| DNA gyrase subunit B [Moraxella catarrhalis RH4] gi|295919928|gb|ADG60279.1| DNA gyrase subunit B [Moraxella catarrhalis RH4] Length = 819 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 402/821 (48%), Positives = 534/821 (65%), Gaps = 22/821 (2%) Query: 1 MSDNIQNS--------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+DN N Y A ++++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DNA Sbjct: 1 MTDNTNNHPQVDAQEIEYTAKNVRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ D I + ++ D S +V DNGRGIP D+H EEG+SAAEVIMT LHAGGKF+ Sbjct: 61 IDEALAGHCDEINIIVHDDESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVSVVNALS L L I R+G + ++ +G+ D PL TGT+ Sbjct: 121 SYKVSGGLHGVGVSVVNALSKKLILNIWRDGYAHTQNYTDGVPDAPLAKL-EPSTQTGTQ 179 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F PS +IF F+YD L RLRELSFLNS V+I L D+R+ + +KGG+ Sbjct: 180 VRFYPSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ--VFEHKGGLSE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVSY++ K L D I +++A++W+D Y+E VLCFTNNIPQKDGGTHLSG Sbjct: 238 FVSYINGGKHTLNDIFHFTADGADGIGVEVALQWSDSYNEKVLCFTNNIPQKDGGTHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR + Y++ +KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSE Sbjct: 298 FRSALTRCLNHYLDSENITKKEKVQITGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+SVVE+ +++ LS +L E+P AK+I K++DA+ RDAAR+AR++TRRK LDIA LP Sbjct: 358 VKSVVETAMHERLSEYLLENPTAAKMIASKIIDAARARDAARKAREMTRRKSTLDIAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP SELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVERARFDKMLSS Sbjct: 418 GKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKMLSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+GTLITALGTGIG D ++ +K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI Sbjct: 478 AEVGTLITALGTGIGPDEYNPDKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELIER 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + RGK Y+KD E+L+ YL++ ++ + ++ L + Sbjct: 538 GHIYIAQPPLYKVKRGKQEVYLKDTEALDAYLLSSTIDDHQLFLSKDTPPVTGVALEKLL 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKS 649 D + + + ++ + + D++ A L N+LN + K Sbjct: 598 KDYSQSQVIKAHLQSKYPSHLLDALTLIPKLDVSGIGDKQAVDEWALALENQLNDLEPKL 657 Query: 650 EKSWHGS--------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + V + Q++L+ + + S S Sbjct: 658 DAKVEAVQVLGGDDGNGHWLPRVTLHIHRLPHQYLLDTNFLGSADYMRLLKLSANWNTVL 717 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I L + R+G+ +QRYKGLGEMN QLWETT++P+ R Sbjct: 718 SNSAFLRRGDKDFIIKDFEYLWQQLMLAARRGVDVQRYKGLGEMNKEQLWETTMDPENRR 777 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +L++ I DA +AD LFS LMGDEVEPRR FI+EN+L + +D Sbjct: 778 MLKITIEDAIKADHLFSCLMGDEVEPRRIFIEENALNADID 818 >gi|93004837|ref|YP_579274.1| DNA gyrase, B subunit [Psychrobacter cryohalolentis K5] gi|92392515|gb|ABE73790.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5] Length = 871 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 389/843 (46%), Positives = 532/843 (63%), Gaps = 50/843 (5%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y + I++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + Sbjct: 32 SDYSSKDIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDII 91 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 92 IHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 151 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L++ I REG Y ++ +G+ D + A + TGT++ F PS+D+F+ F Sbjct: 152 VNALSKKLEMNIWREGYHYHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTIF 210 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 YD L RLRELSFLNS V+I L D+R + E +KGG+ FVSY++ K + Sbjct: 211 EYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVF 268 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I D IS+++A++W D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ Sbjct: 269 HFISNQDDGISVEVALQWTDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRE 328 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + + Sbjct: 329 NLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDY 388 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L+E+P K+I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL Sbjct: 389 LQENPSAGKLIAGKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSEL 448 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG Sbjct: 449 YIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGP 508 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G Sbjct: 509 DEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKG 568 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 + Y+KD+E+L+ YL++ ++ I+ L ++D + + Sbjct: 569 RQELYLKDDEALKAYLLSSTIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIR 628 Query: 608 HDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNF--------------------- 644 + ++ + + + D++ + L +L Sbjct: 629 YPAVLLDALTHTPKLSTDITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKN 688 Query: 645 ------------------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 ++ S+ + + + ++L+ S I S Sbjct: 689 MDAAAADLLGMRPVVAVEESDSSDTEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGE 748 Query: 687 SKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 S + + I I L + R+G+++QRYKG Sbjct: 749 YTKLLRLSAEWNTLLDEDAFIRRDATAGTTKDIPIRDFDYLWQQMMLDARRGLAIQRYKG 808 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMNA QLW+TT++P+ R +LRV I DA AD +F+ LMGD VEPRR FI+EN+L Sbjct: 809 LGEMNADQLWDTTMDPENRRMLRVNIEDAIAADHMFTCLMGDHVEPRRIFIEENALTVSN 868 Query: 801 LDI 803 LDI Sbjct: 869 LDI 871 >gi|39995114|ref|NP_951065.1| DNA gyrase subunit B [Geobacter sulfurreducens PCA] gi|39981876|gb|AAR33338.1| DNA gyrase, B subunit [Geobacter sulfurreducens PCA] gi|298504144|gb|ADI82867.1| DNA gyrase, B subunit [Geobacter sulfurreducens KN400] Length = 795 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 386/807 (47%), Positives = 535/807 (66%), Gaps = 16/807 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D QN Y AD I++L+GL+AV+KRP+MYIG T + GLHH++YE++DN+IDE+L GY Sbjct: 1 MTDE-QNYDYGADKIKVLEGLEAVRKRPAMYIGSTAAQ-GLHHLVYEIVDNSIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + + VT+++DGS TV DNGRGIPTD+H EG AAEV +T LHAGGKF+ SYKVSGGL Sbjct: 59 CNEVNVTIHLDGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G +Y S+ G PL V G GT++TFLP Sbjct: 119 HGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQTPLEVMGETK-KRGTKITFLPDDT 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++D L RLREL+FLN+ V+I++ D+R E + Y+GGI +FV YL+R++ Sbjct: 178 IFETTEFSFDVLSQRLRELAFLNAGVRITITDER-EEGKHHDFHYEGGIVSFVEYLNRNR 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L PI +G + + +++A+++ND Y E V F NNI +GGTHL G R+ALTR + Sbjct: 237 TALHPKPIYFKGEKAGVEMEVALQYNDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + KK+K ++ G+D REG T+V+S+K+P P+F QTK KL +SEV+ VES + Sbjct: 297 NTYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ +LEE+P AK I+ K ++A+ R+AAR+AR+LTRRKG LDI++LPGKLADC ER Sbjct: 357 NEKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEIGTLITA Sbjct: 417 DPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D FDI KLRYH+II+MTDADVDG+HI TLLLTFFFRQMP ++ G LYI +PP Sbjct: 477 LGTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RG+ Y+++E +++ YL+ + + + + S + + ++ + Sbjct: 537 LYKVKRGRKELYLRNEAAMQAYLLEEGTEDMLLFLESGEKTYSGKQIIPILKQLVEYRTI 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + I + +I I +L L I+ + +++ Sbjct: 597 LDKVVRKG----INEELIRVFLRLGVKGGIED--MEQLVPFLTNISRVYDGGDFSPLDDG 650 Query: 661 DILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++V+ R +Q L+ I S+ ++ + + +++ + K Sbjct: 651 RVIVRLGNLRIALDQHTLD--LIGSYEYGLLVESYRKVRDIFGDGRAVVSSEGKELFATT 708 Query: 720 --CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL +KG+S+QRYKGLGEMN QLWETT+ P R+LL+VKI DA +AD +F Sbjct: 709 IGLDLLSFFMDSAKKGLSIQRYKGLGEMNPEQLWETTMEPVNRTLLQVKIEDAIEADTIF 768 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR+FI++N+L LDI Sbjct: 769 TILMGDQVEPRRDFIEQNALNVSNLDI 795 >gi|315497055|ref|YP_004085859.1| DNA gyrase, b subunit [Asticcacaulis excentricus CB 48] gi|315415067|gb|ADU11708.1| DNA gyrase, B subunit [Asticcacaulis excentricus CB 48] Length = 815 Score = 872 bits (2253), Expect = 0.0, Method: Composition-based stats. Identities = 453/822 (55%), Positives = 575/822 (69%), Gaps = 28/822 (3%) Query: 1 MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++N + ++Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE Sbjct: 1 MAENEEHPEVVENAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A + V LN DGSC+VSD+GRG+P D+H EEG+SAAEVIMT+LHAGGKF+Q SYK Sbjct: 61 ALAGHATRVEVILNADGSCSVSDDGRGMPVDIHAEEGVSAAEVIMTQLHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG------NDT 169 VSGGLHGVGVSVVNALS +++L+I R G +E F G + VTG A T Sbjct: 121 VSGGLHGVGVSVVNALSDYVELKIFRNGKTHEARFELGETVRSVEVTGDAPLRENGNPLT 180 Query: 170 GTEVTF------LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 GT VTF P F+ DF+ TL+HRLREL+FLNS V I D R EP +I + Sbjct: 181 GTIVTFLPSLKTGPDQGTFTFIDFDRKTLEHRLRELAFLNSGVHIRFADLREAEPYDIIL 240 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 Y+GGI FV +LD+ K P+++ PI +G RD + +DLA++WND YHE +LCFTNNIPQ+ Sbjct: 241 HYEGGIVEFVKHLDKSKSPIIKEPIDARGLRDKVEVDLALQWNDSYHETMLCFTNNIPQR 300 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+ R ALTR +++Y+E S +KK+K SV G+D REG T VLS+K+PDP+FSSQT Sbjct: 301 DGGTHLAAFRGALTRVMSAYMESSGLAKKEKVSVSGEDAREGLTCVLSVKVPDPKFSSQT 360 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR VE V + LS W EE+P+EAK IV K+++A+ R+AAR+AR+LTRRK Sbjct: 361 KDKLVSSEVRPAVEGIVFEKLSQWFEENPVEAKQIVSKIIEAAAAREAARKARELTRRKS 420 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 LDI SLPGKLADC ERDP KSELF+VEGDSAGGSAKQGR+RENQAILPLRGKILNVERA Sbjct: 421 ALDINSLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNRENQAILPLRGKILNVERA 480 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RFDKMLSS+ IGTLITALGTGIG+D F+I KLRYHKIIIMTDADVDGAHIRTLLLTFF+R Sbjct: 481 RFDKMLSSEMIGTLITALGTGIGRDDFNIEKLRYHKIIIMTDADVDGAHIRTLLLTFFYR 540 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP +I NG+LYI +PPLY + +GKS +Y+KD ++ +LI + SE + S I+ Sbjct: 541 QMPQIIENGYLYIAQPPLYKVAKGKSSRYLKDNTEMDAFLIEEGTSEAVLELR-SGERIT 599 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 DL + A + IEQA + G+F + D + +A RL+ Sbjct: 600 AQDLEAQVRIAKTFKGSVDRLASRAPAFAIEQAALGGLFGDKPD-------LALVAKRLD 652 Query: 644 FIAEKSEKSWHGSINN---SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 + E + W N + R+ RGV E+ VL+ I S ++ + + + Sbjct: 653 RLKEDGDGDWSVEANTTSHGGYVFTRVRRGVSEKIVLDDGLIHSQDARRLNERTLELGDL 712 Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + + + I GP L+ + GRKG+S+QRYKGLGEMN QLWETTL+ D R Sbjct: 713 FNEVSTFRRKDKAADIRGPLDLVAAVLDAGRKGLSIQRYKGLGEMNPDQLWETTLDKDAR 772 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +LL+VK+ +ADDLF +LMGD VEPRREFIQ+N+L + +D Sbjct: 773 TLLQVKVNLTDEADDLFVKLMGDLVEPRREFIQDNALDAEVD 814 >gi|319778798|ref|YP_004129711.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9] gi|317108822|gb|ADU91568.1| DNA gyrase subunit B [Taylorella equigenitalis MCE9] Length = 813 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 386/820 (47%), Positives = 543/820 (66%), Gaps = 24/820 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D+ Q SYDA SI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DN+IDE+L GY Sbjct: 1 MTDSNQKPSYDASSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 D I VT++ D S +V+DNGRGIP ++HK E G SAAE++MT LHAGGKF+Q SYKVSG Sbjct: 61 CDDIVVTIHSDNSISVADNGRGIPVEVHKDDEYGRSAAEIVMTELHAGGKFDQNSYKVSG 120 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS WL+L I+R+G ++EMSF G+ PL V G + GT+V +L Sbjct: 121 GLHGVGVSCVNALSEWLRLTIRRDGQVHEMSFNRGVKVEPLKVVGHT-DKRGTKVHYLAD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 ++IF D++Y+ RLRELSFLN+ V+I L+D+ + + GG+ FVSY+++ Sbjct: 180 TEIFGTIDYSYEVFSKRLRELSFLNNGVKIRLVDELHEKE--ENFEFSGGVTGFVSYINK 237 Query: 239 HKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 K+ + + + S + +D+AM+W D +E VLC+TNNIPQ DGGTHL+GLR+ Sbjct: 238 SKQVIHPNIFHVSKSSSAGGVEVEVDVAMQWTDSINEQVLCYTNNIPQSDGGTHLTGLRA 297 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 A+TR Y+E + +KK K ++G+D REG + VLS+K+P+P+FSSQTK+KLVSSEVR+ Sbjct: 298 AITRVFNKYIESTDLAKKAKVELVGEDMREGLSCVLSVKLPEPKFSSQTKDKLVSSEVRA 357 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VE V +GL WL E+P +A+ I K+++A+ R+A+R+AR+LT+RKG+L+ A LPGKL Sbjct: 358 PVEEVVAEGLETWLLENPNDARDICVKIIEAARAREASRKARELTKRKGILEGAGLPGKL 417 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP K EL++VEGDSAGGSAKQGR+R+ QAILPLRGK+LNVE++R D++ +S I Sbjct: 418 ADCQEKDPAKCELYIVEGDSAGGSAKQGRNRKFQAILPLRGKVLNVEKSRADRIFASDAI 477 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 TLITALGT I +D F++ KLRYH+IIIMTDADVDGAHIRTLLLT F+RQMP L+ G + Sbjct: 478 KTLITALGTSIDKD-FNLEKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQMPKLVEEGHV 536 Query: 535 YIIKPPLYGITRGKS--LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 YI +PPLY + S +Y+KD+ +++ +L + D +I ++L++++ Sbjct: 537 YIAQPPLYKVRIKGSKVERYLKDDAEETEFMQELALKDAGIDLGD--RIIEGDELKSYLS 594 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL----NFIAEK 648 + DK+I+ D++ + QA+ G ++ A+KL + L A + Sbjct: 595 TYMSADKVIRRLSRIMDESTL-QAISHGFVLKLDTEQNAQESATKLKDVLFDPSKPKAVE 653 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + +N+ ++V R+ G ++ + I S K + Sbjct: 654 ITPQYDAELNSHYLVVDRLIHGNKDTSIFNRDFIASNDYKILLNAGESFRGLIKDGAKVF 713 Query: 709 CNGD----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + ++ ++D +F K + QRYKGLGEMN QLWETT++P R LL+ Sbjct: 714 RGEATKRMEYAVSDFKQVVDWLFEQASKSVDKQRYKGLGEMNPDQLWETTMDPSVRRLLQ 773 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V+I DA AD +F LMGD VEPRREFI+EN+L LDI Sbjct: 774 VQIEDAIAADQIFDMLMGDRVEPRREFIEENALTVSDLDI 813 >gi|190572096|ref|YP_001969941.1| DNA gyrase subunit B [Stenotrophomonas maltophilia K279a] gi|190010018|emb|CAQ43623.1| putative DNA gyrase subunit B [Stenotrophomonas maltophilia K279a] Length = 819 Score = 872 bits (2252), Expect = 0.0, Method: Composition-based stats. Identities = 410/821 (49%), Positives = 534/821 (65%), Gaps = 20/821 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD N +YDA+SI L+GL+AV+KRP MYIGD +GLHHM++EV+DN+IDE+ Sbjct: 1 MSDEQNTPANNGNYDANSITALEGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFN 110 L G+AD + VT++ DGS +VSDNGRGIPT H++ +SAAEV+MT LHAGGKF+ Sbjct: 61 LAGHADHVAVTIHADGSVSVSDNGRGIPTGKHEQMSAKLGREVSAAEVVMTVLHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVGVSVVNALS L + + + G Y+ F NG L G Sbjct: 121 DNSYKVSGGLHGVGVSVVNALSQKLLVDVFQNGFHYQQEFSNGAAVTALAKL-ETTTKRG 179 Query: 171 TEVTFLPSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T V F PS+ F +F+YD L RLRELSFLNS V+I L D+R + R Y+GGI Sbjct: 180 TTVRFWPSTVAFHDNVEFHYDILARRLRELSFLNSGVKIVLADER-GDGRRDDFHYEGGI 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +FV +L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL Sbjct: 239 RSFVEHLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDSYQETMYCFTNNIPQKDGGTHL 298 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R ALTR + +Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVS Sbjct: 299 AGFRGALTRVLNNYIEQNGIAKQAKINLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVS 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+VR VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA Sbjct: 359 SDVRPAVENAFGARLEEFLQENPNEAKAIAGKIVDAARAREAARKARDLTRRKGALDIAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML Sbjct: 419 LPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRML 478 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SS ++GTLITALGTGIG+D ++ +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQMP LI Sbjct: 479 SSDQVGTLITALGTGIGRDEYNPDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI PPLY I +GK Y+KD+ +L+ YL + ++ + + I L Sbjct: 539 ERGYVYIGLPPLYKIKQGKQELYLKDDPALDSYLASSAVENAALVPATGEPGIEGLALEK 598 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL-ASKLANRLNFIAEK 648 + I+ +D+ +E V + ES + LA RLN + Sbjct: 599 LLLAYAAALDSIERNAHRYDRNLLEALVDFVPMDLESLRAAGEGEGLDALAKRLNQGSLG 658 Query: 649 S-----EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 S E + +LV R G Q VL S+ S + S + Sbjct: 659 SPRFTLELQEANDERPAAVLVTRRHMGEQHIQVLPMSAFESGELRAIHQASKLLHGLVRE 718 Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 ++ I++ + + ++G +QR+KGLGEMN QLW+TT+NP+TR LL Sbjct: 719 GATISRGAKSIEVDSFAKAQNWLLEEAKRGRQIQRFKGLGEMNPEQLWDTTVNPETRRLL 778 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +V+I DA AD +FS LMGD VEPRR+FI++N+L LDI Sbjct: 779 QVRIEDAVAADQIFSTLMGDVVEPRRDFIEDNALKVANLDI 819 >gi|163854307|ref|YP_001628605.1| DNA gyrase subunit B [Bordetella petrii DSM 12804] gi|163258035|emb|CAP40334.1| DNA gyrase subunit B [Bordetella petrii] Length = 817 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 387/820 (47%), Positives = 522/820 (63%), Gaps = 22/820 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD N +NS Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNSNPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L GY D I VT++ D S +VSDNGRGIPT +HK E G SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGYCDDIVVTIHTDNSISVSDNGRGIPTAIHKDDEFGRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL VTG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++YD L RLRELSFLN+ V+I LID+R + + GG+ FV Sbjct: 180 FLADPIIFNNIEYHYDVLSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVRGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + + +++AM+WND Y E VLCFTNNIPQ+DGGTH++ Sbjct: 238 YINRSKTVLHPNVFAVSAESNAGGVPVGVEVAMQWNDTYSETVLCFTNNIPQRDGGTHMT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR I Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRVINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+I+KLRYH++IIMTDADVDGAHIRTLLLT +RQMP LI Sbjct: 478 SEQIATLITALGTSIG-PDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELIE 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY + G+ +Y+KD++ +++ +L + + I+ L Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAELVPAQGAAPITGEALAEL 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC---ESDQEINVSLASKLANRLNFIAE 647 + D +I D + + E+ L+ + + Sbjct: 597 ARQYVLADAVIARLTRLFDVDALSAMAEGVEIDLSSGEAAAASAQRLSDAMHEAVAGNGV 656 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + + +LV+R+ G V++ + + + Sbjct: 657 EVVAEFDETHEQHRLLVRRMHHGNVRVSVIDADFVQGADYAVLAKSARTFLGLIGAGAFV 716 Query: 708 ICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + + + + S +GIS QRYKGLGEMN QLWETT++P R LL Sbjct: 717 ARGEGDKRKEQFVADFREAMQWLRSEAERGISKQRYKGLGEMNPEQLWETTMDPTVRRLL 776 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 RVKI DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 777 RVKIEDAIAADEIFTTLMGDDVEPRRAFIETHALSASNID 816 >gi|85375173|ref|YP_459235.1| type IIA topoisomeraseb subunit [Erythrobacter litoralis HTCC2594] gi|84788256|gb|ABC64438.1| type IIA topoisomeraseB subunit [Erythrobacter litoralis HTCC2594] Length = 847 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 432/838 (51%), Positives = 565/838 (67%), Gaps = 48/838 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 QN Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L G+ D++ Sbjct: 18 QNGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDLVL 77 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQKSYKVSGGLH 121 + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF + +YKVSGGLH Sbjct: 78 IELNPDGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLH 137 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG----------NDTGT 171 GVGVSVVNALS WL+L I R+G + M F +G L VTG A GT Sbjct: 138 GVGVSVVNALSEWLELVIWRDGKEHYMRFEHGEAVKSLEVTGDAPRVDQNPDDNGFKKGT 197 Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 VTF+ S D F DF+++ L+HR REL+FLNS V+I L DKR + RE MFY+GGI Sbjct: 198 RVTFMASHDTFKNVTDFDFEKLEHRYRELAFLNSGVRILLRDKRHEDVREHDMFYEGGIA 257 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 AFV YLDR+K+PL+ PI + +D I ID+A++WND Y+ENVL FTNNIPQ+DGGTHL+ Sbjct: 258 AFVKYLDRNKQPLVAEPISVSAEKDGIGIDVALQWNDSYYENVLTFTNNIPQRDGGTHLA 317 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 RSALTR + +Y S KK+K S+ G+D REG T+++S+K+PDP+F SQTK+KLVSS Sbjct: 318 AFRSALTRTLNNYATASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFGSQTKDKLVSS 377 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +ES + + + WLEE+P +AK IV+K++DA A R RKG + +ASL Sbjct: 378 EVRQPLESLMGEKMGEWLEENPNDAKAIVQKIIDA-AAAREAARKAREMSRKGAMSVASL 436 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC ERDP KSELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+++S Sbjct: 437 PGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVERARFDRIIS 496 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S+E+GTLI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF RQMP ++ Sbjct: 497 SKEVGTLIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMPEIVK 555 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G L+I +PPLY +++G+S Y+KD+ L+ YLI+ L + S +L+ Sbjct: 556 AGHLFIAQPPLYKVSKGRSEVYLKDDRELDRYLISGGLQGRVLD--SGGTQRSGAELQTL 613 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 +D AL++ LI ++ IE ++GVF+ + + + A RL ++E Sbjct: 614 VDHALRVRNLIGFAPRKYNAAIIEAMALAGVFDPANR--ASAEALERAAERLQLGDPEAE 671 Query: 651 KSWHG-SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 W ++ + +R+ RGV + ++E + S ++ + E+Y L Sbjct: 672 --WSARRTDDGGVAFERVWRGVTDAHLIEPKFLESAEARKLHSVAAEEAESYEVAARLKK 729 Query: 710 --NGDKI---------------------KITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746 +G+ IT P LLD + + GRKG+S+ RYKGLGEMN Sbjct: 730 LSSGETTAPDPESADETDADTPSFTDDDAITRPTELLDAVLAAGRKGLSIARYKGLGEMN 789 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A QLWETTL+P+ R LL+VK+ DA D++F+RLMGD VEPRREFIQ+N+L LD+ Sbjct: 790 AEQLWETTLDPEARILLQVKVEDADVTDEIFTRLMGDVVEPRREFIQDNALNVANLDV 847 >gi|17548157|ref|NP_521559.1| DNA gyrase subunit B [Ralstonia solanacearum GMI1000] gi|17430464|emb|CAD16937.1| probable dna gyrase (subunit b) protein [Ralstonia solanacearum GMI1000] Length = 842 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 391/846 (46%), Positives = 531/846 (62%), Gaps = 47/846 (5%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ + +SSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+I Sbjct: 1 MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109 DE+L G+ I VT++ D S +V DNGRGIPT + E SAAE++MT LHAGGKF Sbjct: 61 DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155 +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F GI Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGK 180 Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 +PL V+G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D Sbjct: 181 TVEVSPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R+ + + GG++ FV Y++++K L + G +D + ++++M+WNDG++E Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQ 297 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG T VLS+ Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 357 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+P+P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AA Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAA 417 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILP Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP +I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L I Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAI 597 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + D I+ + L +I+ D + + S+ Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAGAEA 656 Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682 S + A L S + + ++V R G Q ++ + Sbjct: 657 SAKALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + + + + +T + + + +GIS QR Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQR 776 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN SQLWETT++ R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L Sbjct: 777 YKGLGEMNPSQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALV 836 Query: 799 S-ALDI 803 + +D+ Sbjct: 837 ARNIDV 842 >gi|254251050|ref|ZP_04944368.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] gi|124893659|gb|EAY67539.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] Length = 834 Score = 871 bits (2250), Expect = 0.0, Method: Composition-based stats. Identities = 366/830 (44%), Positives = 504/830 (60%), Gaps = 32/830 (3%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ NSSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+ Sbjct: 10 MSEQHNSQPDNSSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEA 69 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQK 112 L GY + I VT++ D S +V DNGRGIPTD+ E SAAE++MT LHAGGKF+Q Sbjct: 70 LAGYCNDIHVTIHADNSISVVDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN 129 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLV 160 SYKVSGGLHGVGVS VNALSSWL+L ++R G + M F G+ +P+ Sbjct: 130 SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRILETVDGEEVSPMQ 189 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 + G + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 190 IIGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE-- 246 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG++ FV Y+++ K L + + G +D + +++AM+WND Y+ENVLCFTNNI Sbjct: 247 DDFAFAGGVKGFVEYINKTKSNLHPTIFHVIGEKDGVGVEVAMQWNDSYNENVLCFTNNI 306 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP--DPR 338 PQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P + + Sbjct: 307 PQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETTGDDMREGLSCVLSVKVPGAEVQ 366 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 + Q + V L +L E + RDAARR Sbjct: 367 LADQRTSSCR-PKCARRSRKVVAKALEEFLLETRTTRGSSAGTLWWIPRARDAARRRARS 425 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 RRKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L Sbjct: 426 LRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 485 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+AR+DK+LSS++I TL+TALG GIG+D ++++KLRYH+IIIMTDADVDGAHIRTLLL Sbjct: 486 NVEKARYDKLLSSEQIVTLVTALGCGIGKDDYNLDKLRYHRIIIMTDADVDGAHIRTLLL 545 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TFF+RQMP ++ G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 546 TFFYRQMPEMVERGYVYIAQPPLYKIKAGKDERYLKDDAELNAHMLRLALQGSELVPSEN 605 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 IS + L L +I +D +E + + S + + A L Sbjct: 606 AAAISGDALGELARSYLLSQSVIDRLSRLYDPAALEAIMDGVAIDL-SSEASTEASAKAL 664 Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 L+ A K+E + + V+R G V++ + + + Sbjct: 665 HAALHDDALKNEVRVVPSYDAVREQRSLRVERAHHGNVRVSVIDEEFQHTADYQQLVTTA 724 Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754 N + + + + S + + + + +S QRYKGLGEMN QLWETT Sbjct: 725 NTFKGLIGEGAVIKRGERSMAVKDFKSAMKWLLADAERNVSKQRYKGLGEMNPEQLWETT 784 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++P+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 785 MDPNVRRLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV 834 >gi|34101314|gb|AAQ57683.1| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472] Length = 771 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 385/775 (49%), Positives = 516/775 (66%), Gaps = 5/775 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDT +GLHHM++EVLDNAIDE+L G+AD I VT+N D S +V DNGRGIPTD+H Sbjct: 1 MYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTIKVTINPDNSVSVEDNGRGIPTDIHP 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG SAAEVIMT LHAGGKF+ SYK+SGGLHGVGVSVVNALS WLKL+I R+G ++EM Sbjct: 61 EEGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVGVSVVNALSDWLKLKIWRDGKVHEME 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G PL VTG + GTEVTF S + F ++++D L R+RELSFLN V I Sbjct: 121 FRRGDAVAPLTVTGHTSH-RGTEVTFFASVETFGHIEYHFDILAKRIRELSFLNQGVGIQ 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 LIDKRS + + GG+ FV Y++R+K L G +D +S+++AM+WND Y Sbjct: 180 LIDKRSGKE--ENFAFSGGVAGFVEYMNRNKTVLHPKVFYGIGEKDGMSVEVAMQWNDSY 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 E+V CFTNNIPQ+DGGTH++ LR +TR + ++E+S +KK K GDD REG T V Sbjct: 238 QESVQCFTNNIPQRDGGTHMTALRQVMTRTLNQFIEESEAAKKAKVDTTGDDMREGLTCV 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSE+ VV +++ L +L E+P +AKII K+++A+ R Sbjct: 298 LSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEALKTYLLENPNDAKIICGKIVEAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AAR+AR++TRRKGV+D LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ QA Sbjct: 358 EAARKAREITRRKGVMDGLGLPGKLADCQEKDPSLCELYLVEGDSAGGSAKQGRDRKFQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFDKML SQE+ TLITA+G GIG+D ++ +KLRYH+IIIMTDADVD Sbjct: 418 ILPLKGKILNVERARFDKMLQSQEVATLITAMGCGIGKDEYNPDKLRYHRIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 GAHIRTLLLTFF+RQM L+ G +YI +PPLY GK +Y+KD+ L YL+ +L Sbjct: 478 GAHIRTLLLTFFYRQMTELVERGHIYIAQPPLYKAKHGKQERYLKDDGELNQYLLQLALE 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + + + + +S L L +++ D +E + +G + ES Q+ Sbjct: 538 KAELIPAEGEAPLSGETLGEIARQFLLARAVMERESRVIDPLVLEAMLKTGPLSLESQQQ 597 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY 689 + ++A L L+ + + + + + R G VL+ + + S Sbjct: 598 ADATVAE-LNKHLSADTIELQLLRDEKNDGHLVKIIRKLHGNVLVTVLDQNFLDSGDYAE 656 Query: 690 KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 + + + + + LD + + +KG+++QRYKGLGEMN Q Sbjct: 657 LKKTGSLLGGLLRQGAHVKRGETVKPVAEFGEALDWLLAEVKKGMNIQRYKGLGEMNPEQ 716 Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LWETT++P R LL+V+I D ADD+F+ LMGDEVEPRR+FI+ N+L + +D+ Sbjct: 717 LWETTMDPTVRRLLKVRIEDVMGADDVFTTLMGDEVEPRRQFIEGNALIARNIDV 771 >gi|300689717|ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] gi|299076777|emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum PSI07] Length = 838 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 390/842 (46%), Positives = 532/842 (63%), Gaps = 43/842 (5%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQQKPQPENSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKS 113 G+ I VT++ D S +V+DNGRGIPT + E SAAE++MT LHAGGKF+Q S Sbjct: 61 AGHCTEIHVTIHTDNSISVTDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKFDQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156 YKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F GI Sbjct: 121 YKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMDFARGIPQNRLLEQAEAPDGKMVEV 180 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +PL V+G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D+R+ Sbjct: 181 SPLRVSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQRTG 239 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++++K L + G +D + ++++M+WNDG++E VLCF Sbjct: 240 KE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLCF 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG T VLS+K+P+ Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVPE 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AAR+AR Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEEMVAKALTDFLLETPNDAKIICGKIVEAARAREAARKAR 417 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 418 EMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGK 477 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL Sbjct: 478 ILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP++I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L I + Sbjct: 538 LLTFFYRQMPAIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVRA 597 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D I+ + L +I+ D + + S+ S + Sbjct: 598 DGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAGAEASAKA 656 Query: 637 KLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 A L S + + ++V R G Q ++ + Sbjct: 657 LKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGAD 716 Query: 687 SKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742 + + + + +T + + + +GIS QRYKGL Sbjct: 717 YATLSQTAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQRYKGL 776 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN SQLWETT++ R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L + + Sbjct: 777 GEMNPSQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNI 836 Query: 802 DI 803 D+ Sbjct: 837 DV 838 >gi|299065057|emb|CBJ36218.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum CMR15] Length = 842 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 389/846 (45%), Positives = 533/846 (63%), Gaps = 47/846 (5%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ + +SSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+I Sbjct: 1 MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109 DE+L G+ I VT++ D S +V DNGRGIPT + E SAAE++MT LHAGGKF Sbjct: 61 DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155 +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F GI Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHNMEFARGIPQNRLLEQAEAPDGK 180 Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 +PL ++G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D Sbjct: 181 MVEVSPLRMSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R+ + + GG++ FV Y++++K L + G +D + ++++M+WNDG++E Sbjct: 240 QRTGKE--ENFAFSGGVKGFVEYINKNKSVLHPTIFYATGEKDGVGVEVSMQWNDGFNEQ 297 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG T VLS+ Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSV 357 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+P+P+FSSQTK+KLVSSEVR VE V+ L+ +L E P +AKII K+++A+ R+AA Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEIVSKVLNDFLLETPNDAKIICGKIVEAARAREAA 417 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILP Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP +I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L I Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAI 597 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + D I+ + L +I+ D + + S+ + Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAAADA 656 Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682 S + A L S + + ++V R G Q ++ + Sbjct: 657 SAKALKARLLEMQGNASNANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + + + + +T + + + + +GIS QR Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++ R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L Sbjct: 777 YKGLGEMNPEQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836 Query: 799 S-ALDI 803 + +D+ Sbjct: 837 ARNIDV 842 >gi|332976000|gb|EGK12871.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Psychrobacter sp. 1501(2011)] Length = 884 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 389/861 (45%), Positives = 535/861 (62%), Gaps = 63/861 (7%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Q Y + +I++L+GL+AV+ RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D Sbjct: 27 QQAQPEEYSSKNIRVLRGLEAVRVRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCD 86 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I + ++ D S +V DNGRGIP D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHG Sbjct: 87 QIDIIIHEDESVSVMDNGRGIPVDVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHG 146 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS L++ I REG+ Y+ ++ +G+ D + + + TGT++ F PS ++F Sbjct: 147 VGVSVVNALSKKLEMNIWREGHHYQQTYSDGVPDGDIQMLEET-DRTGTQIRFYPSPNVF 205 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + F+++ L RLRELSFLNS V+I L D+R+ + +KGG+ FV+Y++ K+ Sbjct: 206 TGTTFDFEILAKRLRELSFLNSGVRIVLTDERTDKQHV--FEHKGGLSEFVAYINSGKEG 263 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + D I ++ A++W D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + + Sbjct: 264 LNDVFHFVSEQDDGIVVEAALQWTDTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRCLNT 323 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y++ KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D Sbjct: 324 YMDNENLMKKEKVNTTGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHD 383 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + +L E+P AK I K++DA+ RDAAR+AR+LTRRK LDIA LPGKLADC E+DP Sbjct: 384 KFNDYLLENPSAAKSIAGKIIDAARARDAARKARELTRRKTTLDIAGLPGKLADCQEKDP 443 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+GTLITALG Sbjct: 444 ALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGTLITALG 503 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY Sbjct: 504 CGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLY 563 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +G+ Y+KD+E+L+ YL++ ++ E + I+ L + ++D + + Sbjct: 564 KVKKGRQELYLKDDEALKAYLLSSTIDEMNLHISEDAPAITGQALESLLNDYNQTQLVKS 623 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINV--SLASKLANRLNFIA-------------- 646 + ++ + + + +V KL +L Sbjct: 624 RLQIRYPAVLLDALTHVPKLSTDMTYDYDVMSEWKDKLQAQLERFGSDLRPSIELDNIHA 683 Query: 647 -----------------------------EKSEKSWHGSINNSD---------ILVKRIA 668 E + +SD + Sbjct: 684 PRTDELSEAAKDANNQFKFKLGAKVDSPNSDVEDAEVVEGADSDMLSTKPQWLPRITIYV 743 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLL 723 + + ++L+ S S + + I + L Sbjct: 744 HNLAQHYLLDAGFFNSGEYARLMRLSKEWNTLLTDTAFVRRDTTTGTVKDILLRDFDHLW 803 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + R+G+S+QRYKGLGEMNA QLW+TT++P+ R +L+V I DA AD LF LMGD Sbjct: 804 QQVMQEARRGLSVQRYKGLGEMNADQLWDTTMDPENRRMLKVTIEDAIAADHLFMCLMGD 863 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR+FI+EN+L LDI Sbjct: 864 DVEPRRQFIEENALTVTNLDI 884 >gi|254491239|ref|ZP_05104420.1| DNA gyrase, B subunit [Methylophaga thiooxidans DMS010] gi|224463752|gb|EEF80020.1| DNA gyrase, B subunit [Methylophaga thiooxydans DMS010] Length = 777 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 396/780 (50%), Positives = 521/780 (66%), Gaps = 9/780 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EVLDNAIDE+L G+ I V ++ D S +V DNGRGIP D+H+ Sbjct: 1 MYIGDTDDGTGLHHMVFEVLDNAIDEALAGHCSEIQVRIHPDDSVSVIDNGRGIPVDIHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L + I R G IY+ S Sbjct: 61 EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLSMEIHRSGRIYKQS 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ D L TGT++ F PS + F+ ++Y L R+REL+FLNS V+I Sbjct: 121 YTHGVPDAALTDVDDTEI-TGTKIQFWPSEETFTNVTYDYKILAKRIRELAFLNSGVRIV 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R + T +Y+GGI AFV +L+++K + + I+I G RD+++++L+M+WND Y Sbjct: 180 LTDER--DELTETFYYEGGITAFVEHLNKNKSVIHDNIIKIDGMRDDVNVELSMQWNDSY 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 EN+ CFTNNIPQ+DGGTHL+G R+ALTR + Y+E +KK K + GDD REG T+V Sbjct: 238 QENIYCFTNNIPQRDGGTHLAGFRAALTRTLNQYIESEGLAKKSKVTTSGDDAREGLTAV 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEVR++VES+VN+ +L E+P +AK+I K++DA+ R Sbjct: 298 LSVKVPDPKFSSQTKDKLVSSEVRTIVESYVNEFFHDFLIENPNDAKLIANKMIDAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 DAAR+AR+LTRRKGVLDIA LPGKLADC ERDP +SELFLVEGDSAGGSAKQGR R QA Sbjct: 358 DAARKARELTRRKGVLDIAGLPGKLADCQERDPAQSELFLVEGDSAGGSAKQGRDRRTQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFDKM+SS E+GTLITALG GIG+D +D KLRYH IIIMTDADVD Sbjct: 418 ILPLKGKILNVERARFDKMISSAEVGTLITALGCGIGRDEYDPEKLRYHHIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTFF+RQMP LI G +YI +PPLY I +GK +YVKD+ +E YL +L+ Sbjct: 478 GSHIRTLLLTFFYRQMPELIERGHVYIAQPPLYKIKKGKQERYVKDDAEMERYLTEVALN 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + I N L + + ++ +I ++ F+ Q V +D+ Sbjct: 538 NAALYPSEDASAIEGNALAALVTEYQTVNAIIGRLANHYYPAFLNQLVYQPEVPALTDKS 597 Query: 630 INVSLASKLANRLNF-----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFS 684 + LN + K + + G+ + + G S Sbjct: 598 AIEPWLQTIEAALNKGLPTGTSYKLSVKQQDDEPVPLVNISFSRHGISTDYHVPGEFFAS 657 Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 + F+N+I + + K ++ ++ + + R+G +QRYKGLGE Sbjct: 658 TEYQKILSFANKINGLFTDSARVERGDRKESVSYFAEAVNWLLAEARRGQHVQRYKGLGE 717 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 MN QLWETT++ R LL+VKI DA AD+ F+ LMGD VEPRREFI+ ++L LDI Sbjct: 718 MNPDQLWETTMDKSKRRLLQVKIDDAIVADETFNTLMGDNVEPRREFIETHALQVSNLDI 777 >gi|294787816|ref|ZP_06753060.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453] gi|294484109|gb|EFG31792.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453] Length = 812 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 391/818 (47%), Positives = 514/818 (62%), Gaps = 23/818 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ IQ Y ADSIQ+L+GL+AV+KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQIQ-QEYGADSIQVLEGLEAVRKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV +N D S T+ DNGRGIPT +H +EG SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDNITVAINADESITIEDNGRGIPTGIHPKEGRSAAEVIMTILHAGGKFDNNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL+L I REG + ++F G PL V G N GT V FL S Sbjct: 120 HGVGVSVVNALSDWLRLTIWREGKEHFVAFKRGETVEPLKVVGECDPNKHGTRVQFLASE 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 + F + ++TL R+RELSFLN+ V+I L DKR + GG+ FV Y Sbjct: 180 ETFGTVQYKFETLAKRIRELSFLNNGVKIELFDKRDGK--YENFAESGGVTGFVEYTRGS 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKPL G +D ++++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR Sbjct: 238 KKPLHDKIFYALGEKDGMTVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRT 297 Query: 300 ITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 I Y+E + SK +K V GDD REG T +LS+K+PDP+FSSQTK+KLVSSE+ V Sbjct: 298 INQYIEANEIIKKSSKNNKLDVSGDDMREGLTCILSVKLPDPKFSSQTKDKLVSSEIAPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 + +N+ L +LEE+P AKII K++ A+ R+AAR+AR+ +RK V + +LPGKLA Sbjct: 358 ISEVLNEHLKNFLEENPKIAKIITDKIILAATAREAARKARENIQRKNVFEGLNLPGKLA 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK+L +QEI Sbjct: 418 DCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKVLDNQEIS 477 Query: 476 TLITALGTGIGQDSFDI--------NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 L ALG G+ + D KLRYH++IIMTDADVDGAHIRTLLLTFF+RQMP Sbjct: 478 ALFAALGISFGKKTDDDSNTPKINLEKLRYHRVIIMTDADVDGAHIRTLLLTFFYRQMPE 537 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G++YI +PPLY GK+ +Y+KDE+ +++L+ ++ + + V+ +L Sbjct: 538 LLERGYVYIAQPPLYKAKHGKTERYLKDEQEKDEFLLGLAVDKARLV--SGSRVLEGAEL 595 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 L+ I + D + + + ++ ++ L+ L Sbjct: 596 TKVAKQFLRARNTIAEESRVMDADVLRALIDVDAIDLSNENSTKRAI-EMLSGSLKNQEI 654 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS- 706 E G+ +N I + R G L+ + S + + + + Sbjct: 655 ALEY-VAGNDDNHFIKMTRQLHGNVMISYLDQKFVDSKAYQILLKTAEQQRGLLDAAGAE 713 Query: 707 -LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 +GD + LD + + +KG+ +QRYKGLGEMN QLWETT+NPD R LL+V Sbjct: 714 LFKGDGDAQTVKSFEEALDILLAGAQKGMMIQRYKGLGEMNPEQLWETTMNPDVRRLLKV 773 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +I DA AD F LMGDEVEPRR FI+ N+L + +D Sbjct: 774 RIEDAIAADKTFVTLMGDEVEPRRAFIENNALIAQNID 811 >gi|257091666|ref|YP_003165307.1| DNA gyrase subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044190|gb|ACV33378.1| DNA gyrase, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 822 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 384/825 (46%), Positives = 534/825 (64%), Gaps = 25/825 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + S+YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MIEENEESAYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKV 116 D I +T++ D S +V+DNGRGIPT + E SAAE++M LHAGGKFNQ SYKV Sbjct: 61 CDEIVITIHADNSISVTDNGRGIPTGIKFDDKHEPRRSAAEIVMCVLHAGGKFNQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGS 164 SGGLHGVGVS VNALS WL+L I+REG Y + F G + +PL V + Sbjct: 121 SGGLHGVGVSCVNALSRWLRLIIRREGKKYLLEFNRGTVVDRLLEVQKGVEVSPLRVV-A 179 Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 A GTE+ F+ +IF +F+Y+ + RLRELSFLN+ V+I L D+R+ + Sbjct: 180 ATEKRGTELHFMADEEIFGQIEFHYEIIAKRLRELSFLNNGVKIRLNDQRTGKE--EDFA 237 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNI 280 + GG+ FV Y++R K L + G IS+++AM+WND Y E VLCFTNNI Sbjct: 238 FLGGVRGFVEYINRTKSVLHPNIFYASGDSAGGNGVISVEVAMQWNDSYAEQVLCFTNNI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ DGGTH++GLR+A+TR I Y+E++ +KK K + GDD REG VLS+KMPDP+F+ Sbjct: 298 PQADGGTHMTGLRAAMTRVINRYIEENEIAKKAKVDITGDDMREGLACVLSVKMPDPKFA 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK KLVSSE R VE V LS +L+E P++AK+I K+++A+ RDAAR+AR++TR Sbjct: 358 SQTKMKLVSSEARPAVEEVVAAKLSEYLQERPVDAKVITGKIIEAARARDAARKAREMTR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKG+LD LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNV Sbjct: 418 RKGLLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+ARFDK++SSQEI TLITALGTGIG+D + KLRYH++IIMTDADVDGAHIRTLLLTF Sbjct: 478 EKARFDKLISSQEIATLITALGTGIGKDEYKPEKLRYHRLIIMTDADVDGAHIRTLLLTF 537 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+RQMP L+ +G +YI +PPLY + GK+ +Y+KD+++L+ +L+ +L + + Sbjct: 538 FYRQMPELVESGHIYIAQPPLYKVKHGKTERYIKDDQALKQFLLTLALEGAVLIPVAGAP 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L L + +I + + + + + +D+ ++ A L Sbjct: 598 EISGSTLEQLARQYLLAEAVINRLSHLINPEVLHALIDANLAIDLADEASAMASADALMK 657 Query: 641 RLNFIAEKSEK-SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + + + + + +++I G + V++ + S R + + Sbjct: 658 AVGSKLDINIVARFDTAQERWQLRLEKILHGNLKLGVIDDDLLVSGDYAQLRKTAEMLAG 717 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + ++ K ++ + + S + +S QRYKGLGEMN QLWETT++P Sbjct: 718 LFGPGGVVVRAEKKQAVSSFAETMQWLLSEVERSVSKQRYKGLGEMNPEQLWETTMDPKV 777 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LL+V+I DA AD++F+ LMG+ VEPRR FI+ N+L + +D+ Sbjct: 778 RRLLKVQIEDAIGADEIFTTLMGELVEPRRNFIETNALAARNIDV 822 >gi|319945020|ref|ZP_08019282.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis ATCC 51599] gi|319741590|gb|EFV94015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lautropia mirabilis ATCC 51599] Length = 851 Score = 869 bits (2245), Expect = 0.0, Method: Composition-based stats. Identities = 393/828 (47%), Positives = 531/828 (64%), Gaps = 37/828 (4%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YD+ SIQIL+GL+AV+KRP MYIGDT +GLHH+++E +DN++DE+L GY D I VT++ Sbjct: 27 YDSSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFETVDNSVDEALAGYCDEILVTIH 86 Query: 70 MDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 D S +V DNGRGIPTD+ + SAAE++MT LHAGGKF+Q SYKVSGGLHGVGV Sbjct: 87 ADESISVRDNGRGIPTDVKWDDKHDPKRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGV 146 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDTGTEV 173 S VNALS WLKL I R G + + F G+ +P+ V G GTEV Sbjct: 147 SCVNALSRWLKLTINRNGKTHFIEFERGVPKDRVIEEKDGVAISPIKVLGDTT-RRGTEV 205 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FL IFS +++Y+TL RLRELSFLN+ V+I L D R+ + + GG+ FV Sbjct: 206 HFLADDTIFSKVEYHYETLSKRLRELSFLNNGVRIRLQDLRNNKE--EDFAFAGGVSGFV 263 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y++R K L + I+G +D ++++ A++WNDGY+E VLCFTNNIPQ+DGGTHL+GLR Sbjct: 264 EYINRAKNVLHPNIFHIRGEKDGVTVEAALQWNDGYNEQVLCFTNNIPQRDGGTHLTGLR 323 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +A+TR I Y+E++ ++K K GDD REG T VLS+K+P+P+FSSQTK+KLVSSEVR Sbjct: 324 AAMTRVINKYIEENEIARKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKLVSSEVR 383 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 + VE + GL +L E P +AKII K+++A+ R+AAR+ARD+TRRKGVLD LPGK Sbjct: 384 APVEDVIARGLETYLLEKPNDAKIICSKIVEAARAREAARKARDMTRRKGVLDGIGLPGK 443 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC ERDP KSELF+VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFDK+L+S++ Sbjct: 444 LADCQERDPAKSELFIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDKLLASEQ 503 Query: 474 IGTLITALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 + TLIT LGTGI G D F I KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP LI Sbjct: 504 VATLITVLGTGIGSGLGSDDFKIEKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELI 563 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI +PPLY I +G+ +Y+KD+ L+ Y++N S+ + + I+ + L Sbjct: 564 ERGYIYIAQPPLYKIKQGREERYLKDDFELDQYMLNLSMVQAALVPARDAEPITGDALAA 623 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI---- 645 + D +++ D + + + N +S E + S A L + Sbjct: 624 IARKYVMADAVVERLSRLMDHDTLHELMDGLALNLDSADEAHASAERLQAALLKNVHQIS 683 Query: 646 -----AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 A + S + + R G Q+ ++ + S K + + Sbjct: 684 RSLAPAVEVTAHADESGEKWHLRIIRHLHGNQKVSIITQDFLKSSDYKVLSDVAQTLRGL 743 Query: 701 YLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + + KG+S QRYKGLGEMNA QLWETT++ Sbjct: 744 VGEGAEVRRGEGDKVRSQPVGSFREAMRWLLADAEKGVSRQRYKGLGEMNAEQLWETTMD 803 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + R LL+V+I DA AD +F+ LMGD VEPRR FI+EN+L + +D+ Sbjct: 804 VNARRLLKVQIEDAIAADQIFTTLMGDNVEPRRVFIEENALGAQNIDV 851 >gi|237747157|ref|ZP_04577637.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS] gi|229378508|gb|EEO28599.1| DNA gyrase subunit B [Oxalobacter formigenes HOxBLS] Length = 830 Score = 868 bits (2244), Expect = 0.0, Method: Composition-based stats. Identities = 388/836 (46%), Positives = 527/836 (63%), Gaps = 39/836 (4%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS N QN ++Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+ID Sbjct: 1 MSQNTQNEVQENGNAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFN 110 E+L GY I VTL+ D S +V DNGRG+PT + SAAE++MT LHAGGKF+ Sbjct: 61 EALAGYCTEIQVTLHADNSVSVVDNGRGVPTGIKFDDKNTPKRSAAEIVMTELHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158 Q SYKVSGGLHGVGVS VNALS+ L+L I R+G + M F +G+ +P Sbjct: 121 QNSYKVSGGLHGVGVSCVNALSTTLQLTIWRDGKEHYMDFSHGLPQNAAVEIINGVECSP 180 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 + V G + GT V F P + IF+ +F Y+ L R+RELSFLN+ V+I L D+R+ + Sbjct: 181 IKVIGDSDRQ-GTRVQFWPDASIFTTVEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKE 239 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENV 273 Y+GG FV Y++R K L + + G R I +D++M+WND Y+E V Sbjct: 240 --EIFAYEGGTRGFVEYINRGKSVLHPTIFQATGERISELDTPIYVDISMQWNDSYNEQV 297 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 LCFTNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG T VLS+K Sbjct: 298 LCFTNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVK 357 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 +P+P+FSSQTK+KLVSSEVR VE + L+ +L+E P +AKII K+++A+ R+AAR Sbjct: 358 VPEPKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAAR 417 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR+LTRRKGVLD L KLADC E+DP SEL+LVEGDSAGGSAKQGR R QAILPL Sbjct: 418 KARELTRRKGVLDGLGLSAKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRRFQAILPL 477 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 RGK+LNVE++R++KMLSS++I TLI LGT IG D F+I KLRYH+IIIMTDADVDGAHI Sbjct: 478 RGKVLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIEKLRYHRIIIMTDADVDGAHI 537 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 RTLLLT F+RQMP L+ G++YI +PPLY I GK +Y+KD+ +++++ +L Sbjct: 538 RTLLLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASL 597 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633 L + IS L+ D +I+ D + + + ++ S Sbjct: 598 LPGEGVAPISGEQLKEMADQHTVAYNIIQRLSRFIDTDVLSAIMDGVKLRLNTIEDAEKS 657 Query: 634 LASKLANRLN-FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692 A + + K EK+ G++ +LV+R G + VL+ ++ + Sbjct: 658 AVELTAAINDPSVTVKVEKNASGAL---SLLVERTLYGNRHVTVLDTDFVYGNDYRILEK 714 Query: 693 FSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + + + + + + + +GIS QRYKGLGEMN Sbjct: 715 TATSFLNLIGSGAVIRRGEGDRMKQQAVQNFHQAMQWLRTEAERGISKQRYKGLGEMNPD 774 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++P R LL+V+I DA AD +F+ LMGD VEPRR FI+ ++L + +D+ Sbjct: 775 QLWETTMDPSMRRLLKVRIEDAIAADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830 >gi|74316021|ref|YP_313761.1| DNA gyrase subunit B [Thiobacillus denitrificans ATCC 25259] gi|74055516|gb|AAZ95956.1| DNA gyrase, B subunit [Thiobacillus denitrificans ATCC 25259] Length = 823 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 384/828 (46%), Positives = 529/828 (63%), Gaps = 30/828 (3%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 MS+ + N YD DSIQ L+GL+AV+KRP MYIGDT +GLHHM++EVLDNAI Sbjct: 1 MSNKPEYAMPADSNGGYDEDSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGK 108 DE+L G+ D I V ++ D S ++SDNGRGIP D H E SAAE++MT LHAGGK Sbjct: 61 DEALAGWCDDIKVIIHPDNSISISDNGRGIPVGVKFDDKH-EPKRSAAEIVMTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILD 156 FNQ SYKVSGGLHGVGVS VN LS WLKL ++R+G Y ++F NG+ Sbjct: 120 FNQNSYKVSGGLHGVGVSCVNGLSKWLKLVVRRDGKKYALTFNQGKVVDRAVEIQNGVEV 179 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +P+ V G GTEV FL +IF +F++D L R+RELSFLN+ V+I L+D R Sbjct: 180 SPMPVVGDTE-GRGTEVHFLADEEIFGKVEFHFDILAKRIRELSFLNNGVKIELLDHRDG 238 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++R K L G +D +++++AM+WND Y E V CF Sbjct: 239 KS--ENFAHSGGVKGFVEYMNRVKSVLHPKIFHAVGEKDGMTVEVAMQWNDSYSETVQCF 296 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+G+R A+TR + Y+E++ +KK K GDD REG T VLS+K+P+ Sbjct: 297 TNNIPQRDGGTHLTGMRMAMTRVLNKYIEENEVAKKAKVETTGDDMREGLTCVLSVKVPE 356 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEV+ VV+ V L+ +L E+P +AK++ K++DA+ R+AAR+AR Sbjct: 357 PKFSSQTKDKLVSSEVQPVVQEVVGQKLAEFLLENPNDAKLLCAKIVDAARAREAARKAR 416 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGV+D LPGKLADC E+DP SE++LVEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 417 EITRRKGVMDGLGLPGKLADCQEKDPALSEIYLVEGDSAGGSAKQGRDRKFQAILPLKGK 476 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDK++ SQEI TLITALGT IG+D ++ +KLRYH+IIIMTDADVDGAHIRTL Sbjct: 477 ILNVERARFDKVIGSQEIATLITALGTSIGKDDYNPDKLRYHRIIIMTDADVDGAHIRTL 536 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP L+ G +YI +PPLY + G+S +Y+KDE +L+++L+ +++ + Sbjct: 537 LLTFFYRQMPELVERGHVYIAQPPLYKVKHGRSERYIKDEHALKEHLMAEAMKDAELTPM 596 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I+ L + + + ++ + + +S AS Sbjct: 597 EGAMPIAGEALETLAREYFLAEAVCDRLARLLPDDVLQALMRIPRLSLADSAAAMMSEAS 656 Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 L L+ + + ++ + + R + G LE + S + Sbjct: 657 -LGAALDADKFEVAAEYLSETDSHRLRITRHSHGNAYVNFLEADLLESGDYDQLVKVGDM 715 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + + + +D + ++G+S+QRYKGLGEMN QLWETT++ Sbjct: 716 LRDLMGPGARARRGEKEAPVQSFREAMDWYLAEVKRGMSIQRYKGLGEMNPEQLWETTMD 775 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R L++V+I DA +D +F+ LMGDEVEPRR FI+ N+L LD+ Sbjct: 776 PKVRRLMKVQIEDAISSDQIFTTLMGDEVEPRRNFIETNALGVRNLDV 823 >gi|207727476|ref|YP_002255870.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2] gi|300702377|ref|YP_003743977.1| DNA gyrase subunit B [Ralstonia solanacearum CFBP2957] gi|206590713|emb|CAQ56325.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2] gi|299070038|emb|CBJ41323.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia solanacearum CFBP2957] Length = 842 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 388/846 (45%), Positives = 529/846 (62%), Gaps = 47/846 (5%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ + +SSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+I Sbjct: 1 MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109 DE+L G+ I VT++ D S +V DNGRGIPT + E SAAE++MT LHAGGKF Sbjct: 61 DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155 +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F GI Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGK 180 Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 +PL +G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D Sbjct: 181 MVEVSPLRTSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R+ + + GG++ FV Y++++K L + QG +D + ++++M+WNDG++E Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGVGVEVSMQWNDGFNEQ 297 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG VLS+ Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSV 357 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+P+P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AA Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAA 417 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILP Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP +I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L + Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAL 597 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + D I+ + L +I+ D + + S Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSAASAEA 656 Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682 S + A L S + + ++V R G Q ++ + Sbjct: 657 SAQALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + + + + +T + + + + +GIS QR Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++ R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L Sbjct: 777 YKGLGEMNPGQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836 Query: 799 S-ALDI 803 + +D+ Sbjct: 837 ARNIDV 842 >gi|83749736|ref|ZP_00946713.1| DNA gyrase subunit B [Ralstonia solanacearum UW551] gi|207741917|ref|YP_002258309.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609] gi|83723588|gb|EAP70789.1| DNA gyrase subunit B [Ralstonia solanacearum UW551] gi|206593303|emb|CAQ60230.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609] Length = 842 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 388/846 (45%), Positives = 530/846 (62%), Gaps = 47/846 (5%) Query: 1 MSDNIQ-------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ + +SSY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+I Sbjct: 1 MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109 DE+L G+ I VT++ D S +V DNGRGIPT + E SAAE++MT LHAGGKF Sbjct: 61 DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155 +Q SYKVSGGLHGVGVS VN LS WLKL ++R+G ++ M F GI Sbjct: 121 DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGKVHHMDFARGIPQNRLLEQAEAPDGK 180 Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 +PL +G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D Sbjct: 181 MVEVSPLRTSG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTD 239 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R+ + + GG++ FV Y++++K L + QG +D + ++++M+WNDG++E Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTVFNAQGEKDGVGVEVSMQWNDGFNEQ 297 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG VLS+ Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLACVLSV 357 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+P+P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K+++A+ R+AA Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALTDFLLETPNDAKIICGKIVEAARAREAA 417 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILP Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP +I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L + Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDNEMAAYLMRQALDTAL 597 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + D I+ + L +I+ D + + S+ Sbjct: 598 LVRADGTE-IASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAAAEA 656 Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682 S + A L S + + ++V R G Q ++ + Sbjct: 657 SAQALKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFV 716 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + + + + +T + + + + +GIS QR Sbjct: 717 AGADYATLSQTAQTFQGLIGEGAKVRRGTGDKQREQAVTDFHAAITWLLAEAERGISRQR 776 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++ R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L Sbjct: 777 YKGLGEMNPGQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIETNALV 836 Query: 799 S-ALDI 803 + +D+ Sbjct: 837 ARNIDV 842 >gi|319760166|ref|YP_004124104.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF] gi|318038880|gb|ADV33430.1| DNA gyrase subunit B [Candidatus Blochmannia vafer str. BVAF] Length = 808 Score = 867 bits (2240), Expect = 0.0, Method: Composition-based stats. Identities = 383/808 (47%), Positives = 533/808 (65%), Gaps = 16/808 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SSYD+ SI+ILKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE++ GY I V Sbjct: 3 SSYDSSSIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEAIAGYCQKIVVI 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S ++ D+GRGIPT LH+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 63 IHQDNSVSIQDDGRGIPTGLHEEEGISAAEVIMTVLHAGGKFDNNSYKVSGGLHGVGVSV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186 VNALS L+L I+R+ IY+ + G +PL + G + N +GT + F P+ IF + + Sbjct: 123 VNALSEKLELIIERDLKIYKQIYFFGKPKSPLSIVGDS-NKSGTTIRFWPNFQIFTNKIE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y L R +ELSFLN+ V I L D+R+ + GGI+ F+ YL+ +K P+ + Sbjct: 182 FQYAVLARRFQELSFLNAGVSIVLCDERNGKE--EVFCCNGGIKEFIKYLNINKSPIHSN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 G++ +++++A++WND + E + FTNNIPQ+DGGTHLSGL+SA+TR + Y++K Sbjct: 240 IFYCMGNKGEVNVEVALQWNDSFQERIYSFTNNIPQRDGGTHLSGLKSAITRTMHFYIDK 299 Query: 307 SFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K K +G+D REG +VLS+K+ +P+FSSQTKEKLVSSEV+ VES + + L Sbjct: 300 EGYNNKKTKIITLGEDAREGLVAVLSVKIQNPKFSSQTKEKLVSSEVKPAVESLIYEKLM 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + E+P+++K I+ KV+ A+ R++AR+ RDL+RRKG+ D + LPGKL+DC E++P+ S Sbjct: 360 EFFLENPIDSKNIIGKVISAARARESARKVRDLSRRKGLSDFSILPGKLSDCQEKNPRYS 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 420 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVMTLITALGCGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 GQ+ +++NKLRYH II+MTDADVDGAHIRTLLLTFF+R MP +I G ++I +PPLY + Sbjct: 480 GQNEYNLNKLRYHSIILMTDADVDGAHIRTLLLTFFYRHMPEIIERGHIFIAQPPLYKVQ 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +G +Y+KDEE + Y I+ + + +S+ L+ I + I K+I Sbjct: 540 KGIQSKYLKDEEEMYQYQISIAARHARLYLDVNDTFPLSEKMLKKLILEYFVIQKIIVRM 599 Query: 605 YPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + + + V + E L L+ E + + + + +I Sbjct: 600 ERQFPKVLLNRLIYHPVLSTEQCLVYSDVEIWIQSLVESLSRFQEYGDGNDYSFVIQKNI 659 Query: 663 -------LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 +++ GV ++L I S+ F ++ E L+ + Sbjct: 660 KEKYFVPILRIRTYGVDRDYLLGLDLIQSYEYGKLVSFGKKMNELLLSNGYIEYEDCHKN 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I ++ + RKG+ +QRYKGLGEMN QLWETT+NP R +LRV + DA +AD+ Sbjct: 720 INSFNQAIEWLMQQSRKGLIIQRYKGLGEMNPDQLWETTMNPQNRCMLRVTVKDAIEADN 779 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 LFS LMGD VEPRR FI+ N+L + +D Sbjct: 780 LFSTLMGDLVEPRRAFIEANALKATNVD 807 >gi|165922503|ref|ZP_02219674.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334] gi|165916708|gb|EDR35312.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334] Length = 779 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 386/782 (49%), Positives = 519/782 (66%), Gaps = 12/782 (1%) Query: 31 YIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90 YIGDTD SGLHHM++EV+DN+IDE+L G+ I VT++ DGS +V DNGRGIPTD+H E Sbjct: 1 YIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIHADGSVSVRDNGRGIPTDIHPE 60 Query: 91 EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150 EG SAAEVIMT LHAGGKF++ +YKVSGGLHGVG+SVVNALS L + I++ GNIY ++ Sbjct: 61 EGRSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGISVVNALSEELYMTIRQNGNIYTQTY 120 Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210 G+ PL VTG + + TGTE+ F PS+ IFS +F+YD L RLREL+FLN V+I L Sbjct: 121 KMGVPQAPLAVTGKS-DKTGTEIRFKPSNAIFSNTEFHYDILAKRLRELAFLNLGVRIEL 179 Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 D+RS R Y+GGI+AFV +L++ K P+ +++I +++AM+WNDG+ Sbjct: 180 TDERSG--RGDIFEYEGGIKAFVEHLNKKKTPIHSDVFHFSTEKNDIVVEVAMQWNDGFQ 237 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E + CFTNNIPQ DGGTHL+G R+ALTR + +Y+E +KK K ++ GDD REG T VL Sbjct: 238 ETIFCFTNNIPQNDGGTHLAGFRAALTRTLNNYIEGEALAKKSKVTISGDDTREGLTVVL 297 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+PDP+FSSQTK+KLVSSEV+ VVES V L +L E+P +A+II KV+DA+ R+ Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKPVVESTVAKQLHDYLLENPKQARIIAMKVIDAARARE 357 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+ARD+TRRK VLD+ LPGKLADC E+DP ELFLVEGDSAGGSAKQ R R QAI Sbjct: 358 AARKARDMTRRKNVLDLGGLPGKLADCQEKDPALCELFLVEGDSAGGSAKQARDRRYQAI 417 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ ++ +KLRYH+II+MTDADVDG Sbjct: 418 LPLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGKEEYNPDKLRYHRIILMTDADVDG 477 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 +HIRTLLLTFF+RQMP LI G +YI +PPLY + + K QYVKD+ +L+ L+ +L Sbjct: 478 SHIRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKKSKQEQYVKDDLALDALLLQLALDG 537 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQ 628 I + L N + I + +++ + ++ Sbjct: 538 AQFHPTPQAPAIQGSALENLAAHYRTAMRSINRLGKRYPLYILKRLLNFPPLTVADLSEE 597 Query: 629 EINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQEQFVLEGSSI 682 E ++ +L +LN ++ + +V I G+ +Q + Sbjct: 598 EKVIAWTQRLEEQLNEPKTENSLRYQTAIKKDAERELYLPMVTIINHGIAQQHLFHQEFF 657 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGL 742 ++ N+I ++ N + +T L+ G+KG+++QRYKGL Sbjct: 658 GCADYRHLVDLYNKISGLIEPGAYIVRNDKRRTVTHFGEALEWFIEEGKKGLNIQRYKGL 717 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN QLWETT++ ++R LL V I DA AD++F+ LMGD+VEPRR FI++N+L L Sbjct: 718 GEMNPDQLWETTMDRESRRLLSVSIEDAVMADEIFTTLMGDQVEPRRLFIEQNALAVENL 777 Query: 802 DI 803 D+ Sbjct: 778 DV 779 >gi|148262089|ref|YP_001228795.1| DNA gyrase, B subunit [Geobacter uraniireducens Rf4] gi|146395589|gb|ABQ24222.1| DNA gyrase subunit B [Geobacter uraniireducens Rf4] Length = 794 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 387/806 (48%), Positives = 531/806 (65%), Gaps = 15/806 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD+ + Y AD I++L+GL AV+KRP+MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSDDTTSKDYGADKIKVLEGLSAVRKRPAMYIGSTS-VQGLHHLVYEIVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N+DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYKVSGGL Sbjct: 60 CDDILVTINVDGSVTVVDNGRGIPTDMHPTEGKSAAEVVLTVLHAGGKFDNSSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G ++ S+ G PL V G GT++TF P + Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKLFRQSYRCGDPQGPLEVVGETK-KRGTKITFFPDDE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++DTL RLRE++FLN+ V+I ++D+R+ + E FY+GGI +FV YL+++K Sbjct: 179 IFETTEFSFDTLSQRLREMAFLNAGVRIKIVDERTEKVHE--FFYEGGINSFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ PI I G + + +++AM++ND Y E + F NNI +GGTHL G ++ALTR + Sbjct: 237 TPIHPKPIYISGEKGGVEMEIAMQYNDSYDEKIFTFANNINTHEGGTHLIGFKAALTRTM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K K ++ G+D REG TSV+S+K+P P+F QTK KL +SEV+ VE+ + Sbjct: 297 NTYANANNLLKNVKENISGEDLREGLTSVISVKIPQPQFEGQTKTKLGNSEVKGYVETLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ +LEE+P AK I++K +DA+ R+AARRARDLTRRKG L++ +LPGKLADC E+ Sbjct: 357 NEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEI TLI A Sbjct: 417 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEIRTLIAA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT IG+ FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM +I G+LYI +PP Sbjct: 477 LGTSIGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLEMIERGYLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RG+ QY+K+E +L++YL+ + + + + + ++ + L Sbjct: 537 LYKIKRGRKEQYLKNEAALQNYLLEEGTEDMTLRLGSDERTYRGKQIIPLLKQLIEHNSL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + E L LA ++S ++ Sbjct: 597 FGKVVKKGLNEELLKMFLKSGVKSGF--EELRDLEPYLAKM-----KESFAGSDYVVSEQ 649 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITG 718 I+ V +++ S+ + NRIE+ + + + +K + Sbjct: 650 KIIFMIGNVRVSIDHH-TVAALNSYEYELLAESQNRIEKLIGDVKATVSTEEKQLFESES 708 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LL F +KG+ +QRYKGLGEMN QLWETT++P+ R LL+VKI D +A+++F+ Sbjct: 709 HEELLAFFFETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRVLLQVKIEDIVEAEEIFT 768 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRREFI++N+L LDI Sbjct: 769 VLMGDQVEPRREFIEQNALNVSNLDI 794 >gi|317401670|gb|EFV82295.1| DNA gyrase subunit B [Achromobacter xylosoxidans C54] Length = 815 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 383/822 (46%), Positives = 533/822 (64%), Gaps = 26/822 (3%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +N Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTPENGGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L GY D I VT++ D S +V+DNGRGIPTD+HK E SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL VTG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V+I LID+R + + GG++ FV Sbjct: 180 FLADPIIFTNVEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+ Sbjct: 238 YINRAKTVLHPNVFSVTTESTAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR I Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRIINKYITDNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L WL EHP +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEEAVARTLETWLLEHPNDAKALCGKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+++KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY + G+ +Y+KD++ +++ +L + + +I ++L Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--AGGNIIRGDELNEL 594 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAE 647 + D +I D + N ++ + S LA + + ++ Sbjct: 595 ARQYVAADGVIARLSRVFDVAALSAMAEGVEINLDTAEAAADSAKRLADAMRDPISGNGV 654 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + + + ++R+ G +++ I + + SL Sbjct: 655 EVVPEFDAATERHRLSIQRMHHGNVRVSIIDADFIGGSDYAILSKAAKSFS-GKVGPQSL 713 Query: 708 ICNGD-----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + G+ + ++ + + S +GIS QRYKGLGEMN QLWETT++P R L Sbjct: 714 VARGEGDKRKEQTVSDFREAMQWLRSEADRGISKQRYKGLGEMNPDQLWETTMDPKVRRL 773 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LRV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D+ Sbjct: 774 LRVQIEDAIAADEVFTTLMGDDVEPRRNFIEAHALSAGNIDV 815 >gi|78221232|ref|YP_382979.1| DNA gyrase subunit B [Geobacter metallireducens GS-15] gi|78192487|gb|ABB30254.1| DNA gyrase subunit B [Geobacter metallireducens GS-15] Length = 795 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 380/807 (47%), Positives = 535/807 (66%), Gaps = 16/807 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D + N+ Y AD I++L+GL+AV+KRP+MYIG T + GLHH++YE++DN+IDE+L GY Sbjct: 1 MADEL-NNDYGADKIKVLEGLEAVRKRPAMYIGSTASQ-GLHHLVYEIVDNSIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + + VT+++DGS TV DNGRGIPT++H EG AAEV +T LHAGGKF+ SYKVSGGL Sbjct: 59 CNEVNVTIHLDGSITVVDNGRGIPTEMHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G +++ S+ G PL + G GT +TFLP Sbjct: 119 HGVGVSVVNALSKKLELGIRRDGKVFQQSYAYGAPLTPLEIVGETK-KRGTRITFLPDDT 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++D L RLREL+FLN+ V+I++ D+R E + Y+GGI +FV YL+R++ Sbjct: 178 IFETTEFSFDILSQRLRELAFLNAGVRITISDER-EEGKHHDFHYEGGIVSFVEYLNRNR 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L P+ +G R I +++A+++ND Y E V F NNI +GGTHL G R+ALTR + Sbjct: 237 TVLHPKPVYFRGERAGIDMEIAIQYNDSYDEKVFTFANNINTHEGGTHLVGFRAALTRSM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + +KK+K S+ G+D REG T+V+S+K+P P+F QTK KL +SEV+ VES + Sbjct: 297 NSYAAANELTKKEKVSISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGFVESLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ +LEE+P AK I+ K ++A+ R+AAR+AR+LTRRK LDI+SLPGKLADC ER Sbjct: 357 NEQLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKSALDISSLPGKLADCQER 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEIGTLITA Sbjct: 417 DPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT IG++ FD+ KLRYH+II+MTDADVDG+HI TLLLTFFFRQMP ++ G LYI +PP Sbjct: 477 LGTSIGKEDFDVAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RG+ Y+++E +++ YL+ + + + + + + + + ++ + Sbjct: 537 LYKVKRGRKELYLRNEAAMQAYLLEEGTEDMVLFLENGEKTYTGKQIIPILKQLVEYRTI 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + + + + +L L I+ E +++ Sbjct: 597 LDKVVRKGINEELIRVFL------RLGVKAGIEDMEQLVPYLANISRVYEGGDSSPLDDG 650 Query: 661 DILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +V+ R +Q L+ I S+ ++ E + +++ + K Sbjct: 651 RAIVRLGNLRIALDQHTLDI--IGSYEYGLLAESFRKVREMFGDGRAVVSSEGKELFATA 708 Query: 720 --CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL +KG+S+QRYKGLGEMN QLWETT+ P R+LL+VKI DA +AD +F Sbjct: 709 IGLDLLSFFMDSAKKGLSIQRYKGLGEMNPDQLWETTMEPTNRTLLQVKIEDAIEADTIF 768 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR+FI++N+L LDI Sbjct: 769 TILMGDQVEPRRDFIEKNALNVSNLDI 795 >gi|6580765|gb|AAF18271.1| DNA gyrase subunit B [Zymomonas mobilis subsp. mobilis ZM4] Length = 822 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 420/799 (52%), Positives = 563/799 (70%), Gaps = 16/799 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Q+ YDA SI++L+GLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+L GY Sbjct: 1 MATSKQHDDYDAGSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGY 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS----YKV 116 D++ + + DGS +V DNGRGIPT +H EEG+SAAEVIMT+LHAGGKF+ + YKV Sbjct: 61 CDLVKIAIYDDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFDNNANSNAYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS +L+L + R+G + M F +G+ PL V G A + GT V F Sbjct: 121 SGGLHGVGVSVVNALSDYLELTVWRDGQEHRMRFEHGVAVEPLQVVG-ASDKRGTRVRFH 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++ F + +FN++ L+HR REL+FLNS V++ L DKR+ + + +FY+GGI AFV +L Sbjct: 180 PSAETFKITEFNFEKLEHRYRELAFLNSGVRLQLTDKRTDPEKTVELFYEGGIAAFVKWL 239 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K L+ P+ I G RD++ ID+A+ WND Y+E VLCFTNNIPQ+DGGTHL+ R+AL Sbjct: 240 DRAKTALIPEPVAIHGDRDDVMIDVALEWNDSYYEQVLCFTNNIPQRDGGTHLAAFRAAL 299 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + +Y +KS KK+K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEVR + Sbjct: 300 TRTLNNYADKSGLLKKEKVQLTGDDMREGLTAIISVKLPDPKFSSQTKDKLVSSEVRQPL 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + D ++ WLEE+P AK+I++K++DA+ R+AA+RAR+LTRRKGV+DIASLPGKLAD Sbjct: 360 ESLMADKMAEWLEENPAHAKVIIQKIIDAAAAREAAKRARELTRRKGVMDIASLPGKLAD 419 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ERDP KSE+F+VEGDSAGGSAKQGR+R NQAILPL+GKILN ER+R D+MLSS+E+GT Sbjct: 420 CQERDPTKSEIFIVEGDSAGGSAKQGRNRHNQAILPLKGKILNTERSRLDRMLSSKEVGT 479 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI ALGTGI +D F+I KLRYHKI+IMTDADVDGAHIRTLLLTFF+R MP +I NG LYI Sbjct: 480 LIQALGTGI-RDEFNIAKLRYHKIVIMTDADVDGAHIRTLLLTFFYRHMPEIIENGHLYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPL+ + + +S Y+KDE +L++YL++ ++ + GV S NDL ++ A + Sbjct: 539 AQPPLFKVAKNRSEVYLKDEAALDNYLMDAGVASMMLH--TDNGVRSGNDLHQMVEHARR 596 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 L+ + IE A ++G F + E + ++A L +S+ W Sbjct: 597 TRLLMNYVPNRYYAPLIETAALAGAFQSDIADEKRQDILKQVAEILTRSDSESDARWSVE 656 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT--ILSLIC----- 709 L +R+ RGV + L+ + I S + + E+Y++ L+ Sbjct: 657 FIPEGFLFRRLWRGVTDAHTLDWNFIQSSEAAKLHQLAQEQAESYISTHPARLVTLAAQM 716 Query: 710 -NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I P L + I ++G KG+S+ RYKGLGEMN QLWETTL+P RS+L+V++ Sbjct: 717 DEEAGQDIYRPSQLFEAILAVGSKGLSISRYKGLGEMNPEQLWETTLDPANRSMLKVEVE 776 Query: 769 DASQADDLFSRLMGDEVEP 787 A AD +FSRLMGD VEP Sbjct: 777 QADVADGIFSRLMGDVVEP 795 >gi|187927115|ref|YP_001897602.1| DNA gyrase subunit B [Ralstonia pickettii 12J] gi|241661628|ref|YP_002979988.1| DNA gyrase subunit B [Ralstonia pickettii 12D] gi|309780180|ref|ZP_07674931.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA] gi|187724005|gb|ACD25170.1| DNA gyrase, B subunit [Ralstonia pickettii 12J] gi|240863655|gb|ACS61316.1| DNA gyrase, B subunit [Ralstonia pickettii 12D] gi|308920883|gb|EFP66529.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA] Length = 842 Score = 864 bits (2233), Expect = 0.0, Method: Composition-based stats. Identities = 385/846 (45%), Positives = 527/846 (62%), Gaps = 47/846 (5%) Query: 1 MSDNIQN-------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ + +SYDA SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+I Sbjct: 1 MTEEQKPQSTPAEANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKF 109 DE+L G+ I VT++ D S +V DNGRGIPT + E SA E+ MT LHAGGKF Sbjct: 61 DEALAGHCTEIQVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKF 120 Query: 110 NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-------------- 155 NQ SYKVSGGLHGVGVS VN LS W+K+ +++ G ++ + F G+ Sbjct: 121 NQNSYKVSGGLHGVGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQ 180 Query: 156 ---DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 +PL V G + GTEV FL +IF+ +++Y+ L R+RELSFLN+ V I L D Sbjct: 181 MVEVSPLRVLG-TTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIRLTD 239 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R+ + + GG++ FV Y++++K L + G +D ++++++M+WND Y+E Sbjct: 240 QRTGKE--EDFAFSGGVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQ 297 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG T VLS+ Sbjct: 298 VLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSV 357 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+P+P+FSSQTK+KLVSSEVR VE V LS +L E P++AKII K+++A+ R+AA Sbjct: 358 KVPEPKFSSQTKDKLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAA 417 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKGVLD LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAILP Sbjct: 418 RKAREMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILP 477 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSSQE+ TLITA+GTGIG+D ++++KLRYH+IIIMTDADVDG+H Sbjct: 478 LKGKILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSH 537 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP +I G +YI +PPLY I GK +Y+KD+ + YL+ Q+L + Sbjct: 538 IRTLLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALDTAV 597 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + D I+ + L +I+ D + + ++ Sbjct: 598 LVRPDGTE-IAGDALAELARQYQLSRGVIERLSRVIDADALRAIAEGVSLDLSNEAAAEA 656 Query: 633 SLASKLANRLNFIAEKSEKS----------WHGSINNSDILVKRIARGVQEQFVLEGSSI 682 S + A L S + + I+V R G Q ++ + Sbjct: 657 SARTLKARLLEMQGNASSANGGATADAFMQYDEKTEKYRIMVVRRQHGNQRLSHIDADFV 716 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738 + + + + + + + + S +G+S QR Sbjct: 717 AGADYTALSSTAATFQGLIGDGAKVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQR 776 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++ R LLRV+I DA AD +F+ LMGD+VEPRR FI+ N+L Sbjct: 777 YKGLGEMNPEQLWETTMDVTQRRLLRVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALV 836 Query: 799 S-ALDI 803 + +D+ Sbjct: 837 ARNIDV 842 >gi|114326985|ref|YP_744142.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1] gi|114315159|gb|ABI61219.1| DNA gyrase subunit B [Granulibacter bethesdensis CGDNIH1] Length = 810 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 431/817 (52%), Positives = 575/817 (70%), Gaps = 21/817 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD + +YDA SI +L+GLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ Sbjct: 1 MSDPTPLPPDSDAYDASSISVLRGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A +T+TLN DGS TV+D+GRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SYKV Sbjct: 61 QAGFASEVTLTLNGDGSVTVTDDGRGIPTDIHAEEGISAAEVVLTRLHAGGKFNQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG +VVNALS W+++RI REG + + F +G + PLV G + +GT+VTF Sbjct: 121 SGGLHGVGAAVVNALSEWMEVRIWREGREHFIRFRHGDAEAPLVEIGPSPRGSGTQVTFK 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS+ F+ +F + TL+ RLREL+FLNS ++I L D+R +E Y+GG+ AFV +L Sbjct: 181 PSNLTFTRVEFEFATLERRLRELAFLNSGLKIVLRDERHVPAQESVFCYEGGLTAFVEWL 240 Query: 237 DRHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 DR K L PI G + +I ++ ++ WND +HE +LCFTNNIPQ+DGGTHL+G Sbjct: 241 DRGKVALFDPPISAAGSANADQGDIKVEFSLVWNDSFHETMLCFTNNIPQRDGGTHLAGF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR ++ Y E ++ +++G+D REG T+VLS+K+PDP+FSSQTKEKLVSSEV Sbjct: 301 RQALTRVVSKYAEGLGKK--EQLALVGEDMREGMTAVLSVKVPDPKFSSQTKEKLVSSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + VV + V D + W E HP E + I++K +DA+ R+AARRAR+LTRRKGVLDI+SLPG Sbjct: 359 QPVVHAAVADAIGHWFETHPKETRSIIQKAMDAASAREAARRARELTRRKGVLDISSLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC ERDP K E+F+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFD+ML S Sbjct: 419 KLADCQERDPSKCEIFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDRMLGSA 478 Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EIGTLITALGTGIG+ FDI KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP Sbjct: 479 EIGTLITALGTGIGRGEPEQGGFDIAKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPQ 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L NG LYI +PPL+ TRGK +Y+KDE +LE+YL++++L+E D V + ++L Sbjct: 539 LFTNGHLYIAQPPLFKATRGKDERYLKDERALEEYLLSKALNEAQLTLAD-GRVFAGDEL 597 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + ++ +EQAV++G + L+ RLN I+ Sbjct: 598 AEEVNHLRDVAARMRRLAGGIPLALLEQAVVAGALRPD----ATPDTLQTLSARLNAISP 653 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 SE+ W + + ++R RGV E+ LE +++ S +++ ++++ Y +SL Sbjct: 654 ASERGWIVASEGEGLTMRRTVRGVAERHTLEATALRSAEARWLAERTDQLAARYTQPVSL 713 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + ++++ GP S+L+ I + GRKG+S QR+KGLGEMN QLW TTL+P TR+LL+VK+ Sbjct: 714 ALDAARLELAGPASVLERILAHGRKGLSFQRFKGLGEMNPEQLWSTTLDPATRTLLQVKV 773 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D A +FS LMGD VEPRR+FI N+L LD+ Sbjct: 774 GDIEDAGQIFSTLMGDVVEPRRDFIVGNALKVANLDV 810 >gi|296282200|ref|ZP_06860198.1| DNA gyrase, B subunit [Citromicrobium bathyomarinum JL354] Length = 839 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 432/847 (51%), Positives = 562/847 (66%), Gaps = 52/847 (6%) Query: 1 MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M +N +N Y ADSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNAIDE+ Sbjct: 1 MDENTKNGRNTGEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQK 112 L G+ D++ + LN DGS V DNGRGIP D+HK EG+SAAEVIMT+LHAGGKF + Sbjct: 61 LAGHCDLVLIELNPDGSVAVEDNGRGIPVDMHKGEGVSAAEVIMTQLHAGGKFENTSDDN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN----- 167 +YKVSGGLHGVGVSVVNALS WL+L I R+G + M F +G L V G A Sbjct: 121 AYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVASLEVRGDAPPVDSNG 180 Query: 168 -----DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 GT VTF S D F +F+++ L+HR REL+FLNS V I L D+R + +E Sbjct: 181 DENGLKKGTRVTFKASEDTFKNVTEFDFEKLEHRYRELAFLNSGVHIKLRDRRGEDVQEH 240 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 +FY+GGI AFV+YLDR+K L+ PI + +D I ID+A+ WND Y+ENVL FTNNIP Sbjct: 241 DLFYEGGIAAFVNYLDRNKDALIPEPISVSAEKDGIGIDVALEWNDSYYENVLAFTNNIP 300 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+ R+ALTR + +Y S KK+K S+ G+D REG T+++S+K+PDP+FSS Sbjct: 301 QRDGGTHLAAFRTALTRTLNNYAAASGLLKKEKVSLSGEDMREGLTAIVSVKLPDPKFSS 360 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVRS +ES + D ++ WLEE+P AK IV+KV+DA A R R Sbjct: 361 QTKDKLVSSEVRSPLESLMGDKMTEWLEENPNHAKAIVQKVVDA-AAAREAARRAREMSR 419 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KG + +ASLPGKLADC ERDP K ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE Sbjct: 420 KGAMSVASLPGKLADCQERDPSKCELFLVEGDSAGGSAKQGRDRKTQAILPLKGKILNVE 479 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 RARFD+++SS+E+GTLI A+GTGI +D F++ KLRYHKI+IMTDADVDGAHIRTLLLTFF Sbjct: 480 RARFDRIISSKEVGTLIQAMGTGI-RDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFF 538 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 RQ+P ++ NG L+I +PPLY + RG+S Y+KDE +L+ YL+ + L + + V Sbjct: 539 HRQLPEIVKNGHLFIAQPPLYKVARGRSEVYLKDERALDRYLVAEGLQDRVLDSATG--V 596 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 + DL +D AL++ L+ +D +E ++G F+ E+ + A R Sbjct: 597 RAGADLSALVDHALRMRNLLAYAPRKYDTAIVETLAMAGAFDPENL--AAGDALDRAAAR 654 Query: 642 LNFIAEKSEKSWHGSIN-NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 L +E W G + + I++ R+ RGV + ++E + S ++ + + Sbjct: 655 LQMG--DTEAKWSGERSPDGGIMLSRLWRGVTDTHLIEEKFLESAEARKLHKVAAENLDA 712 Query: 701 YLTILSLIC--------------------NGDKI---KITGPCSLLDTIFSIGRKGISMQ 737 Y + L+ + I P L D + + GRKG+S+Q Sbjct: 713 YESAAKLVKPSAVEDAPEPDSEDDGGTPDRSATVGQGTIIRPTQLFDAVIAAGRKGLSVQ 772 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMNA QLWETTL+PD R+LL+VKI DA D++FSRLMGD VE RREFIQ+N+L Sbjct: 773 RYKGLGEMNAEQLWETTLDPDNRALLQVKIEDADVTDEIFSRLMGDVVETRREFIQDNAL 832 Query: 798 PS-ALDI 803 LDI Sbjct: 833 NVANLDI 839 >gi|217968468|ref|YP_002353702.1| DNA gyrase subunit B [Thauera sp. MZ1T] gi|217505795|gb|ACK52806.1| DNA gyrase, B subunit [Thauera sp. MZ1T] Length = 833 Score = 864 bits (2232), Expect = 0.0, Method: Composition-based stats. Identities = 380/829 (45%), Positives = 519/829 (62%), Gaps = 32/829 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + YD SIQ L+GL+AV+KRP MYIGDT +GLHHM++EV+DN+IDE+L G+ Sbjct: 10 ASAKAHEDYDETSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNSIDEALAGHC 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 D I +T++ D S +V+DNGRGIP D H E SAAE++M LHAGGKFNQ SYKV Sbjct: 70 DDIVITIHADNSISVTDNGRGIPVGVKMDDKH-EPKRSAAEIVMCVLHAGGKFNQNSYKV 128 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGS 164 SGGLHGVGVS VNALS W+ + + R+G + + F G +P V G Sbjct: 129 SGGLHGVGVSCVNALSKWMNVTVARDGKRHLLEFERGKPQNRVIEVVDGVEVSPARVIGE 188 Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 GT+V +L +IF +++YD L RLRELSFLN+ V+I LID+R+ + Sbjct: 189 TT-KRGTKVHYLADEEIFGTIEYHYDILAKRLRELSFLNNGVKIRLIDQRTGKE--EDFA 245 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRI---------QGSRDNISIDLAMRWNDGYHENVLC 275 + GG++ FV Y++R K L + G +++++AM+WND Y E VLC Sbjct: 246 FAGGVKGFVEYINRAKTVLHPNVFYATGTTRIPTGHGHDAELAVEVAMQWNDSYQEQVLC 305 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 +TNNIPQ DGGTHL+GLR+A+TR I Y+E++ +KK K + GDD REG VLS+KMP Sbjct: 306 YTNNIPQADGGTHLTGLRAAMTRVINKYIEENEIAKKAKVDITGDDMREGLACVLSVKMP 365 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 DP+F+SQTK KLVSSE R VE V L +L E+P++AK I K+++A+ RDAAR+A Sbjct: 366 DPKFASQTKMKLVSSEARPAVEEVVASKLGDFLLENPIDAKTICNKIVEAARARDAARKA 425 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 R++TRRKGVLD LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ QAILPL+G Sbjct: 426 REMTRRKGVLDGVGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLKG 485 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+ARFDK+L SQEI TLITALGT IG+D + KLRYH+II+MTDADVDGAHIRT Sbjct: 486 KILNVEKARFDKLLQSQEIATLITALGTSIGKDDYKPEKLRYHRIILMTDADVDGAHIRT 545 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLTFF+RQMP L+ G +YI +PPLY I GKS Y+KD+ L ++L+ +L + + Sbjct: 546 LLLTFFYRQMPELVERGHIYIAQPPLYKIKHGKSEMYIKDDSELSNHLLRLALDGAVLVP 605 Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 + IS+ L L + + + D ++ + + D+ + A Sbjct: 606 REGADPISEEALGGLARTYLLAEAVTRRLASYIDPEVLQVMLAHDIEVSLDDEAAARASA 665 Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695 ++ L + +H + ++R+ G ++ +E + S + R + Sbjct: 666 ERIQPHLPEGLQIY-AEYHDEAEGWRLTIERLHHGNRKFGWVEHDFLVSGDYRAIRNAAE 724 Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 I + + ++ + + + +GI+ QRYKGLGEMN QLWETT+ Sbjct: 725 AISGLIGPGAEIRRGEKRQTVSRFADAIKWMLADVERGITKQRYKGLGEMNPEQLWETTM 784 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P R LLRV+I DA AD++F+ LMGD VEPRR FI+ N+L + +D+ Sbjct: 785 DPAVRRLLRVQIDDAIAADEIFTTLMGDNVEPRRAFIEGNALYAQNIDV 833 >gi|258542323|ref|YP_003187756.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256633401|dbj|BAH99376.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01] gi|256636460|dbj|BAI02429.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-03] gi|256639513|dbj|BAI05475.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-07] gi|256642569|dbj|BAI08524.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-22] gi|256645624|dbj|BAI11572.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-26] gi|256648677|dbj|BAI14618.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-32] gi|256651730|dbj|BAI17664.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654721|dbj|BAI20648.1| DNA gyrase subunit B Hsp90-like ATPase [Acetobacter pasteurianus IFO 3283-12] Length = 812 Score = 863 bits (2231), Expect = 0.0, Method: Composition-based stats. Identities = 426/817 (52%), Positives = 568/817 (69%), Gaps = 19/817 (2%) Query: 1 MSD------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M+D + + YDA SI +LKGLDAV+KRP MYIGDTD SGLHHM +E++DNA+D Sbjct: 1 MTDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVD 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+ G+A VT N DGS +V DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SY Sbjct: 61 EAQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHAEEGISAAEVVLTRLHAGGKFNQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG +VVNALS W+++RI R G + + F +G D PL V G + +GTEVT Sbjct: 121 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 180 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F PSS+ F DF++ L+ RLREL+FLNS ++I L D R RE FY+GG+EAFV+ Sbjct: 181 FKPSSETFPKTDFDFTILERRLRELAFLNSGLEIVLRDARVTPVREEKFFYEGGLEAFVN 240 Query: 235 YLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 +LDR + L ++ + I ++ A+ WND +HE +LCFTNNIPQ+DGG HL+G Sbjct: 241 WLDRSRTSLFAPPITGSLENPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGAHLAGF 300 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR + Y E +KKD S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 301 RQALTRVVGKYAES--IAKKDAHSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + VV + D +S W E HP EAKI++ KVLDA+ R+AAR+AR+LTRRKGVLD++SLPG Sbjct: 359 QPVVHAAAADIISHWFETHPKEAKIVISKVLDAASAREAARKARELTRRKGVLDVSSLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC RDP K+ELF+VEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S Sbjct: 419 KLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSA 478 Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EIGTLITALGTGIG+ F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP Sbjct: 479 EIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI G+LYI +PPLY RG Y+KD+ +LE YL+N++L+ ++ D K V+S +L Sbjct: 539 LIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYLLNKALNNASFVYTD-KRVVSGEEL 597 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + + + I IEQ ++G + E L RL+ + Sbjct: 598 AADLPFIRQAAQAINRLSNRIPSWIIEQVALAGALTTDV--EQLQQRMPALQRRLDAASA 655 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 ++EKSW + + + R RGV E + ++ + + S +++ + +NR+++++ ++L Sbjct: 656 ENEKSWKAVASADGVELARNVRGVGEVYRIDPTMLASNDARWLTMQANRLQKDFAEGVAL 715 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + + +++GP L + + GR+G+++ R+KGLGEMN +QLWETTL+P R+LL+V++ Sbjct: 716 KNDTTEHQLSGPADLYARLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRV 775 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +A D+F+ LMGD VEPRR+FI N+L LD+ Sbjct: 776 GDVEEAGDVFTTLMGDIVEPRRDFIVGNALKVANLDV 812 >gi|189423086|ref|YP_001950263.1| DNA gyrase B subunit [Geobacter lovleyi SZ] gi|189419345|gb|ACD93743.1| DNA gyrase, B subunit [Geobacter lovleyi SZ] Length = 802 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 379/811 (46%), Positives = 527/811 (64%), Gaps = 17/811 (2%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ ++ Y A SI++L+GL AV+KRP+MYIG T +GLHH++YE++DN+IDE Sbjct: 1 MSEFEQNGTAASNEYGAGSIKVLEGLSAVRKRPAMYIGST-ASAGLHHLVYEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ + ++VT+N DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYK Sbjct: 60 ALAGHCNDVSVTINTDGSITVVDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNDSYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WL L I+R+G I+ ++ G +PL VTG GT++TF Sbjct: 120 VSGGLHGVGVSVVNALSKWLDLEIRRDGKIWRQTYHRGEPQSPLEVTG-TTRRRGTKITF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 +P +IF ++++D L RLREL+FLN+ V+I + D+R + + FY+GGI +FV Y Sbjct: 179 MPDEEIFETTEYSFDVLSQRLRELAFLNAGVRIKINDER-ADGKSHDFFYEGGINSFVEY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+R K PL Q PI +G + + ++++M++ND Y E + F NNI +GGTHL+G ++A Sbjct: 238 LNRAKTPLHQKPIYFKGEKGGVEMEVSMQYNDTYDEKIFSFANNINTHEGGTHLAGFKAA 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y + +K K ++ GDD REG T V+S+K+P P+F QTK KL +SEV+ Sbjct: 298 LTRTMNTYAAGNNLTKNAKVAISGDDLREGMTCVISVKIPQPQFEGQTKTKLGNSEVKGY 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES +N+ L+ +LEE+P AK I++K ++A+ R+AAR+ARDLTRRKG LD+ LPGKLA Sbjct: 358 VESLLNEKLAVYLEENPQVAKRILEKSIEAARAREAARKARDLTRRKGALDLGGLPGKLA 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP EL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKMLSSQEI Sbjct: 418 DCQEKDPALCELYLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKMLSSQEIR 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITA+GTGIG+D FDI KLRY +II+MTDADVDG+HI TLLLTFF+R M LI G LY Sbjct: 478 TLITAMGTGIGKDDFDIAKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMQELIERGHLY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + RGK Y+++E +L+ +L+ + E I + I + Sbjct: 538 IAQPPLYKVKRGKKELYLRNEAALQTFLLEEGAEELILSMEKGDRSYIGKQIIPVIRQLI 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + L + + +I ++ + N + + + + + Sbjct: 598 EWRALFEKVVKKGIPADLLDLLIRAGVRPGIEEVAGL---ESYLNTMQGLIDDCDYQYQA 654 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-- 713 + + R V + L + S + + ++ E L+ + K Sbjct: 655 EDERVTFRIGNM-RSVIDNQTL--GVLASHEYELLVESNRKVAELMAGGLARLEENGKGL 711 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ + LL +KG+++QRYKGLGEMN QLWETT+NP+ R LL+VKI D +A Sbjct: 712 LETSRHEELLSYFLDYAKKGLAIQRYKGLGEMNPDQLWETTMNPENRILLQVKIEDVVEA 771 Query: 774 DDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 D +F+ LMGD+VEPRREFI+ N+L LD+ Sbjct: 772 DQIFTVLMGDQVEPRREFIELNALNVVNLDV 802 >gi|71899732|ref|ZP_00681884.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1] gi|71730527|gb|EAO32606.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1] Length = 814 Score = 862 bits (2228), Expect = 0.0, Method: Composition-based stats. Identities = 401/816 (49%), Positives = 534/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ S YD+ I +L+GLDAV+KRP MYIGD +GLHHM++EV+DN++D Sbjct: 1 MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+ SY Sbjct: 61 EALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS L L I R+G Y+ + G PL GT + Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYFLGEPQYPLKQL-EVSAKRGTTLR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P+ +IFS +F+Y+ L RLRELSFLNS +++SLID+R E R Y+GGI +FV Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ Sbjct: 239 HLAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y+E++ +++ K + GDD REG +VLS+K+P+P FSSQTKEKLVSS+V+ Sbjct: 299 ALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VE+ L +L+E+P EA+ I K++DA+ R+AAR+ARDLTRRKGVLDIA LPGKL Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+ Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G + Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHV 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLY + +GKS Y+KD+ +L YL N ++ L + + I L + Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651 + I +D +E + + Q + L LN + + + Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + +++ +L R G + VL+ S++ + + + + ++ Sbjct: 659 LKMQFPDEQHSATLLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRKGAKIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I + +KG +QR+KGLGEMN QLW+TT+NPDTR LL+V I Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D AD +FS LMGD VEPRR FI+ N+L LDI Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814 >gi|28197950|ref|NP_778264.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1] gi|182680577|ref|YP_001828737.1| DNA gyrase subunit B [Xylella fastidiosa M23] gi|28056010|gb|AAO27913.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1] gi|182630687|gb|ACB91463.1| DNA gyrase, B subunit [Xylella fastidiosa M23] gi|307579031|gb|ADN63000.1| DNA gyrase subunit B [Xylella fastidiosa subsp. fastidiosa GB514] Length = 814 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 400/816 (49%), Positives = 534/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ S YD+ I +L+GLDAV+KRP MYIGD +GLHHM++EV+DN++D Sbjct: 1 MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+ SY Sbjct: 61 EALAGHADSILVKIHIDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS L L I R+G Y+ ++ G PL GT + Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQL-EVSAKRGTTLR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P+ +IFS +F+Y+ L RLRELSFLNS +++SLID+R E R Y+GGI +FV Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L + K PL + I + G + I +D A++W D Y E + CFTNNIPQKDGGTHL+G R+ Sbjct: 239 HLAQLKTPLHPNVISVTGEHNGIVVDAALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y+E++ +++ K + GDD REG +VLS+K+P+P FSSQTKEKLVSS+V+ Sbjct: 299 ALTRTLGNYIEQNGVARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VE+ L +L+E+P EA+ I K++DA+ R+AAR+ARDLTRRKGVLDIA LPGKL Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+ Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 GTLITALGTGIG+D ++ +KLRYH++IIMTDADVDG+HIRTLLLTFF+RQMP LI G + Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRVIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLY + +GKS Y+KD+ +L YL N ++ L + + I L + Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651 + I +D +E + + Q + L LN + + + Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + +++ +L R G + VL+ S++ + + + + ++ Sbjct: 659 LKMQFPDEQHSAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I + +KG +QR+KGLGEMN QLW+TT+NPDTR LL+V I Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D AD +FS LMGD VEPRR FI+ N+L LDI Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814 >gi|15836610|ref|NP_297298.1| DNA gyrase subunit B [Xylella fastidiosa 9a5c] gi|9104765|gb|AAF82818.1|AE003855_5 DNA gyrase subunit B [Xylella fastidiosa 9a5c] Length = 814 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 403/816 (49%), Positives = 536/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ S YD+ I +L+GLDAV+KRP MYIGD +GLHHM++EV+DN++D Sbjct: 1 MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+ SY Sbjct: 61 EALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS L L I R+G Y+ ++ G PL G + GT + Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLGVSA-KRGTTLR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P+ +IFS +F+Y+ L RLRELSFLNS +Q+SLID+R E R Y+GGI +FV Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLQVSLIDER-GEGRRDDFHYEGGIRSFVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ Sbjct: 239 HLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y+E++ +++ K + GDD REG +VLS+K+P+P FSSQTKEKLVSS+V+ Sbjct: 299 ALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VE+ L +L+E+P EA+ I K++DA+ R+AAR+ARDLTRRKGVLDIA LPGKL Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+ Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G + Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLY + +GKS Y+KD+ +L YL N ++ L + + I L + Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651 + I +D +E + + Q + L LN + + + Sbjct: 599 IAAKDTIARHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + + +L R G + VL+ S++ + + + + ++ Sbjct: 659 LKMQFPDEQHPAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I + +KG +QR+KGLGEMN QLW+TT+NPDTR LL+V I Sbjct: 719 RGTKSQSIECFGDAQAWLLEDAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D AD +FS LMGD VEPRR FI+ N+L LDI Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814 >gi|71905645|ref|YP_283232.1| DNA gyrase subunit B [Dechloromonas aromatica RCB] gi|71845266|gb|AAZ44762.1| DNA gyrase subunit B [Dechloromonas aromatica RCB] Length = 834 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 387/832 (46%), Positives = 533/832 (64%), Gaps = 34/832 (4%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS + + +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L Sbjct: 8 MSSPQDAGSPAYGESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALA 67 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKS 113 G+ + I VT++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ S Sbjct: 68 GHCNDIIVTIHTDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNS 126 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVV 161 YKVSGGLHGVGVS VNALS +L+L I+R+G + M F G+ +P+ + Sbjct: 127 YKVSGGLHGVGVSCVNALSKFLRLTIRRDGKKHFMEFCRGVPVDRSIEVRNGLEVSPMKI 186 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 G GTEV FL +IF +F+Y+ L RLRELSFLN+ V I L+D+R+ + Sbjct: 187 LGDTE-KRGTEVHFLADEEIFGHVEFHYEILAKRLRELSFLNNGVSIKLVDQRTGKE--E 243 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----------RDNISIDLAMRWNDGYHE 271 + GG+++FV Y++R K L S G I +++AM+WND Y E Sbjct: 244 LFAFAGGVQSFVEYINRTKSVLHPSIFYSAGEAKVGQGAADTGIIIGVEVAMQWNDSYQE 303 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 VLCFTNNIPQ DGGTHL+GLR+A+TR I Y++++ +KK K + GDD REG VLS Sbjct: 304 QVLCFTNNIPQSDGGTHLTGLRAAMTRVINKYIDENEIAKKAKVDIAGDDMREGLACVLS 363 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 +KMPDP+F+SQTK KLVSSE R+ VE V L+ +L E P++AK+I K+++AS R+A Sbjct: 364 VKMPDPKFASQTKMKLVSSEARAAVEEVVAQKLADFLLERPVDAKMICGKIVEASRAREA 423 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 ARRAR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAIL Sbjct: 424 ARRAREMTRRKGVLDGVGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAIL 483 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PLRGK+LNVE+ARFDK++SS++I TLITALGTGIG+D F++ KLRYH+IIIMTDADVDGA Sbjct: 484 PLRGKVLNVEKARFDKLISSEQIVTLITALGTGIGKDDFNVEKLRYHRIIIMTDADVDGA 543 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 HIRTLLLT +RQMP LI G++YI +PPLY + GK+ +Y+KD++ +L+N +L E Sbjct: 544 HIRTLLLTLLYRQMPELIDRGYVYIAQPPLYKVKHGKTERYLKDDQEYHQFLLNMALDEA 603 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 + I+ L L + +I + ++ V + S +E Sbjct: 604 VLTPRADAEGITGPALEGLARSWLATEAVIDRLSHLINPEVLQSIVRHNIAIDLSSEENA 663 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691 + A ++A + K + + V+R+ G + +++ + S R Sbjct: 664 RASAERIAGFIPAGTRMVPK-FDDIQERWILRVERMHHGNLKVGLIDEDLLLSGDFTQLR 722 Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751 + + + + ++ K +T + + + +GI+ QRYKGLGEMN QLW Sbjct: 723 RTAETLADMFGAGATMARGEKKQVVTNFADAMKWLLNEVERGIAKQRYKGLGEMNPEQLW 782 Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 ETT++P R LLRV+I DA AD++F+ LMG++VEPRR FI+ N+L + +DI Sbjct: 783 ETTMDPKVRRLLRVQIDDAIAADEIFTTLMGEDVEPRRAFIETNALSARVDI 834 >gi|71275531|ref|ZP_00651817.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon] gi|71900178|ref|ZP_00682318.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1] gi|170729255|ref|YP_001774688.1| DNA gyrase subunit B [Xylella fastidiosa M12] gi|71163831|gb|EAO13547.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon] gi|71730067|gb|EAO32158.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1] gi|167964048|gb|ACA11058.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12] Length = 814 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 401/816 (49%), Positives = 535/816 (65%), Gaps = 15/816 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ S YD+ I +L+GLDAV+KRP MYIGD +GLHHM++EV+DN++D Sbjct: 1 MTEKQNTSLLSNGGIYDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVD 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+AD I V +++DGS +VSDNGRGIP D+HKEEG+SAAEVI+T LHAGGKF+ SY Sbjct: 61 EALAGHADSILVKIHVDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS L L I R+G Y+ ++ G PL GT + Sbjct: 121 KVSGGLHGVGVSVVNALSERLWLDIWRDGYHYQQEYVLGDPQYPLKQL-EVSAKRGTTLR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P+ +IFS +F+Y+ L RLRELSFLNS +++SLID+R E R Y+GGI +FV Sbjct: 180 FKPAKEIFSDVEFHYENLAKRLRELSFLNSGLKVSLIDER-GEGRRDDFHYEGGIRSFVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R+ Sbjct: 239 HLAQLKTPLHSNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRA 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y+E++ +++ K + GDD REG +VLS+K+P+P FSSQTKEKLVSS+V+ Sbjct: 299 ALTRTLGNYIEQNGIARQAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKP 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VE+ L +L+E+P EA+ I K++DA+ R+AAR+ARDLTRRKGVLDIA LPGKL Sbjct: 359 AVEATFGLRLEEFLQENPNEARAIAGKIVDAARAREAARKARDLTRRKGVLDIAGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+MLSS E+ Sbjct: 419 ADCQEKDPAMSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEV 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 GTLITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G + Sbjct: 479 GTLITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHI 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLY + +GKS Y+KD+ +L YL N ++ L + + I L + Sbjct: 539 YIGLPPLYKLKQGKSELYLKDDIALNVYLANSAVEGAQLLPAEGEPPIEGLALEKLLITY 598 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV-SLASKLANRLNFIAEKSEK-- 651 + I +D +E + + Q + L LN + + + Sbjct: 599 IAAKDTIVRHSHRYDSRLLEALLEFTPLDSTCFQSYSDSEHLQSLMALLNQSSLGAPRYI 658 Query: 652 ---SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + +++ +L R G + VL+ S++ + + + + ++ Sbjct: 659 LKMQFPDEQHSAALLATRYHMGEELTQVLQLSALETGELRPLYEAAKLLHGLIRNGAKIV 718 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I + +KG +QR+KGLGEMN QLW+TT+NPDTR LL+V I Sbjct: 719 RGTKSQSIECFGDAQAWLLEEAKKGRQIQRFKGLGEMNPEQLWDTTVNPDTRRLLQVCIE 778 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D AD +FS LMGD VEPRR FI+ N+L LDI Sbjct: 779 DGIAADQIFSTLMGDVVEPRRGFIENNALKVTRLDI 814 >gi|309784252|ref|ZP_07678891.1| DNA gyrase, B subunit [Shigella dysenteriae 1617] gi|308927759|gb|EFP73227.1| DNA gyrase, B subunit [Shigella dysenteriae 1617] Length = 762 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 380/764 (49%), Positives = 513/764 (67%), Gaps = 12/764 (1%) Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DNAIDE+L G+ I VT++ D S +V D+GRGIPT +H EEG+SAAEVIMT LHAGGK Sbjct: 2 VDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGK 61 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND 168 F+ SYKVSGGLHGVGVSVVNALS L+L I+REG I+ + +G+ PL VTG Sbjct: 62 FDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-K 120 Query: 169 TGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 TGT V F PS + F+ +F Y+ L RLRELSFLNS V I L DKR + Y+G Sbjct: 121 TGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEG 178 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 GI+AFV YL+++K P+ + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGT Sbjct: 179 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGT 238 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 HL+G R+A+TR + +Y++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KL Sbjct: 239 HLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKL 298 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 VSSEV+S VE +N+ L+ +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+ Sbjct: 299 VSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL 358 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 A LPGKLADC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDK Sbjct: 359 AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDK 418 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 MLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP Sbjct: 419 MLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPE 478 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 ++ G +YI +PPLY + +GK QY+KD+E+++ Y I+ +L S ++ L Sbjct: 479 IVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHTNASAPALAGEAL 538 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVSLASKLANRLNFI 645 + + K+I + K +++ + SD++ + L + LN Sbjct: 539 EKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTETDLSDEQTVTRWVNALVSELNDK 598 Query: 646 AE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 + K + + N + +V+ GV + L+ I + ++ Sbjct: 599 EQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL 658 Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + + + LD + R+G+S+QRYKGLGEMN QLWETT++P++R Sbjct: 659 LEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESR 718 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 +LRV + DA AD LF+ LMGD VEPRR FI+EN+L + +DI Sbjct: 719 RMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 762 >gi|329113486|ref|ZP_08242267.1| DNA gyrase subunit B [Acetobacter pomorum DM001] gi|326697311|gb|EGE48971.1| DNA gyrase subunit B [Acetobacter pomorum DM001] Length = 851 Score = 861 bits (2225), Expect = 0.0, Method: Composition-based stats. Identities = 427/817 (52%), Positives = 568/817 (69%), Gaps = 19/817 (2%) Query: 1 MSD------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M+D + + YDA SI +LKGLDAV+KRP MYIGDTD SGLHHM +E++DNA+D Sbjct: 40 MTDLSQPTPSAVSEEYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVD 99 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+ G+A VT N DGS +V DNGRGIPTD+H EEGISAAEV++TRLHAGGKFNQ SY Sbjct: 100 EAQAGFASRCIVTFNADGSVSVRDNGRGIPTDMHTEEGISAAEVVLTRLHAGGKFNQNSY 159 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG +VVNALS W+++RI R G + + F +G D PL V G + +GTEVT Sbjct: 160 KVSGGLHGVGAAVVNALSEWMEVRIWRNGQEHFIRFQHGERDAPLEVVGPSSEPSGTEVT 219 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F PSS+ F DF++ L+ RLREL+FLNS ++I L D R RE FY+GG+EAFV Sbjct: 220 FKPSSETFPKTDFDFTILERRLRELAFLNSGLEIVLRDARVTPMREEKFFYEGGLEAFVD 279 Query: 235 YLDRHKKPLM--QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 +LDR + L ++ + I ++ A+ WND +HE +LCFTNNIPQ+DGG HL+G Sbjct: 280 WLDRSRTSLFAPPITGSLENPDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGAHLAGF 339 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR + Y E +KKD S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV Sbjct: 340 RQALTRVVGKYAES--IAKKDALSLQGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEV 397 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + VV + D +S W E HP EAKI+V KVLDA+ R+AAR+AR+LTRRKGVLD++SLPG Sbjct: 398 QPVVHAAAADIISHWFETHPKEAKIVVSKVLDAASAREAARKARELTRRKGVLDVSSLPG 457 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC RDP K+ELF+VEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S Sbjct: 458 KLADCQARDPAKAELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSA 517 Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EIGTLITALGTGIG+ F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP Sbjct: 518 EIGTLITALGTGIGRGEPEQGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPE 577 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI G+LYI +PPLY RG Y+KD+ +LE YL+N++L+ ++ D K V+S +L Sbjct: 578 LIERGYLYIAQPPLYRAKRGNEETYLKDDAALEQYLLNKALNNASFVYTD-KRVVSAEEL 636 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + + + I IEQ ++G + E+ L RL+ + Sbjct: 637 AADLPFIRQAAQAINRLSNRIPSWIIEQVALAGALTTDI--ELLQQRMPALQQRLDAASA 694 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 ++EKSW + + + R RGV E + ++ + + S +++ + +NR+++++ ++L Sbjct: 695 ENEKSWKAVASADGVELARNVRGVGEVYRIDPTMLASNDARWLTMQANRLQKDFAEGVAL 754 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + + +++GP L + + GR+G+++ R+KGLGEMN +QLWETTL+P R+LL+V++ Sbjct: 755 KNDTTEHQLSGPADLYTRLLAQGRRGLTINRFKGLGEMNDAQLWETTLDPAMRTLLQVRV 814 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +A D+F+ LMGD VEPRR+FI N+L LD+ Sbjct: 815 GDVEEAGDVFTTLMGDIVEPRRDFIVGNALKVANLDV 851 >gi|126640119|ref|YP_001083103.1| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 784 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 394/786 (50%), Positives = 519/786 (66%), Gaps = 16/786 (2%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DNAIDE+L G+ D I VT++ D S +VSDNGRGIPTD+H Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDEIIVTIHEDESVSVSDNGRGIPTDIHP 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAAEVI+T LHAGGKF+ SYKVSGGLHGVGVSVVNALSS L L I R G I+E Sbjct: 61 EEGVSAAEVILTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLHLTIYRAGQIHEQE 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G PL V G ++TGT V F PS++ FS FN + L RLRELSFLN+ V+I Sbjct: 121 YHHGDPQYPLRVIGET-DNTGTTVRFWPSAETFSQTIFNVEILARRLRELSFLNAGVRIV 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R E Y+GG+ FV Y++ K L + + + I++++A++WND Y Sbjct: 180 LRDERI--NLEHVYDYEGGLSEFVKYINEGKNHLNEIFHFTADADNGIAVEVALQWNDSY 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 ENV CFTNNIPQKDGGTHL+G R+ALTR + Y+E KK+K +V GDD REG T++ Sbjct: 238 QENVRCFTNNIPQKDGGTHLAGFRAALTRGLNQYLENENILKKEKVNVTGDDAREGLTAI 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+K+PDP+FSSQTKEKLVSSEV+ VE +N SA+L E+P AK I K++DA+ R Sbjct: 298 ISVKVPDPKFSSQTKEKLVSSEVKPAVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 DAAR+AR++TRRK LDIA LPGKLADC E+DP SEL+LVEGDSAGGSAKQGR+R+ QA Sbjct: 358 DAARKAREMTRRKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFDKM+SSQE+GTLITALG GIG++ ++ +KLRYHKIIIMTDADVD Sbjct: 418 ILPLKGKILNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTFFFRQMP L+ G +YI +PPLY + +GK QY+KD ++LE YLI+ ++ Sbjct: 478 GSHIRTLLLTFFFRQMPELVERGHIYIAQPPLYKLKKGKQEQYIKDNDALETYLISNAID 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 E I+ L I D K ++ + + ++ + F + + + Sbjct: 538 ELALHISADAPAITGEALAKVIQDYQVSQKSLQRLTLRYPASLLDALLEVDAFKADQNHD 597 Query: 630 IN--VSLASK-----------LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFV 676 A + L + + E + + V + ++ Sbjct: 598 QAYVQQWADQVREAVQRLQPSLRPEITLETFERENAQGEKSAHYWPRVTVYIHNLPHAYL 657 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736 L+ + S S + L +I++ + I R+G+ + Sbjct: 658 LDAGLLNSAEYARLLKNSKSWFKLIEDGAYLQKGDRRIQVANFHQVWQHILQDSRRGMMI 717 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R++L+V I DA +AD +FS LMGD+VEPRR FI+EN+ Sbjct: 718 QRYKGLGEMNAEQLWETTMDPENRNMLQVTIDDAIEADRMFSCLMGDDVEPRRAFIEENA 777 Query: 797 LPSALD 802 L + +D Sbjct: 778 LNADID 783 >gi|304319868|ref|YP_003853511.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503] gi|303298771|gb|ADM08370.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503] Length = 770 Score = 859 bits (2219), Expect = 0.0, Method: Composition-based stats. Identities = 448/775 (57%), Positives = 569/775 (73%), Gaps = 6/775 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM+YEV+DNAIDE+L GY D +TV LN DGS +VSDNGRGIPT++H Sbjct: 1 MYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDTVTVALNADGSVSVSDNGRGIPTEIHT 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EG+SAA+VIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WL+L I R G ++M Sbjct: 61 GEGVSAAQVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELVIYRGGKRHQMR 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F NG + L V G + +GTEVTF PS+DIF++ DF+++TL+ RLREL+FLNS V+I Sbjct: 121 FENGDPVDDLAVMGET-DKSGTEVTFHPSADIFAITDFDFETLEKRLRELAFLNSGVKIV 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R +P ++Y+GG+EAFV YLD K +M +PI +D + +D+AM WND Y Sbjct: 180 LTDRRHVDPVVEELYYEGGLEAFVRYLDNAKSAIMGAPISFSTEKDGLVVDVAMWWNDSY 239 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 HE VLCFTNNIPQ+DGGTHL+G R+ALTR + SY + S KK+K S+ GDD REG T V Sbjct: 240 HEKVLCFTNNIPQRDGGTHLAGFRAALTRVVNSYAQSSGLLKKEKVSLSGDDAREGLTCV 299 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 LS+K+PDP+FSSQTK+KLVSSEVR VVES V + L+ W EE+P + K + +KV++A+ R Sbjct: 300 LSVKVPDPKFSSQTKDKLVSSEVRPVVESAVGEALNIWFEENPGDGKRVAQKVVEAAAAR 359 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 +AARRAR+LTRRKG LDI+SLPGKLADC ERDP KSELFLVEGDSAGGSAKQ R+RENQA Sbjct: 360 EAARRARELTRRKGALDISSLPGKLADCQERDPAKSELFLVEGDSAGGSAKQARNRENQA 419 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFDKMLSSQE+GTLITALGTGIG+D F+I+KLRYHKI+IMTDADVD Sbjct: 420 ILPLKGKILNVERARFDKMLSSQEVGTLITALGTGIGKDDFNIDKLRYHKIVIMTDADVD 479 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 GAHIRTLLLTFF+RQMP ++ G+LYI +PPLY ++RGKS QY+ DE +L ++L ++ + Sbjct: 480 GAHIRTLLLTFFYRQMPEIVRRGYLYIAQPPLYKVSRGKSEQYLIDESALAEHLYSEGMD 539 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 S + D + A + + F + I Q +SG+ Sbjct: 540 GAKL-RLGSGEERAGQDFAAVVTAARASMQAVAAFPDRFPRKVIVQTALSGLM---GGTP 595 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSK 688 + +L KL +RL+ +E+ E+ W +I D +++ R RGV+E+ L G+ + S ++ Sbjct: 596 LTEALTQKLIDRLDMTSEEYERGWAVTIEGGDGLVISRTLRGVEERHHLTGNILQSGDAR 655 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + L+ D++ + GP LLD I G+KGIS+QRYKGLGEMN Sbjct: 656 RLANAIAPLVPVFEQPAFLLRKDDELVVFGPGRLLDAIREAGQKGISVQRYKGLGEMNPE 715 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 QLWETTL+ + R LLRV+I +A QADD+FSRLMGD VEPRREFIQEN+L + LDI Sbjct: 716 QLWETTLDANARQLLRVEIEEADQADDIFSRLMGDVVEPRREFIQENALAAELDI 770 >gi|311103227|ref|YP_003976080.1| DNA gyrase subunit B [Achromobacter xylosoxidans A8] gi|310757916|gb|ADP13365.1| DNA gyrase, B subunit [Achromobacter xylosoxidans A8] Length = 815 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 385/820 (46%), Positives = 535/820 (65%), Gaps = 24/820 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +NS Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTPENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L GY D I VT++ D S +V+DNGRGIPTD+HK E SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGYCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL VTG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGEVHQMEFRQGERVAPLAVTG-TTDKRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V+I LID+R + + GG++ FV Sbjct: 180 FLADPIIFNNIEYHYEILSKRLRELSFLNNGVKIRLIDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + + +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+ Sbjct: 238 YINRSKTVLHPNVFSVTTESSAGGVPVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR I Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L +WL E+P++AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEEAVARTLESWLLENPIDAKALCAKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F+++KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNVDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY + G+ +Y+KD++ +++ +L + + +I ++L + Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--SGGNIIRGDELSDL 594 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAE 647 + D +I D + N ES + S LA + + ++ Sbjct: 595 ARQYVAADGVIARLSRVFDVGALSAMAEGVEINLESAESTADSARRLADAMRDPVSGNGV 654 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS----KYKRIFSNRIEENYLT 703 + + + + V+R+ G +++ + K + FS ++ L Sbjct: 655 EVVPQFDEATERHRLSVQRMHHGNVRVSIIDADFVNGSDYAVLSKAAKSFSGKVSARSLA 714 Query: 704 ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + ++ + + S + IS QRYKGLGEMN QLWETT++P R LL Sbjct: 715 ARGEGEKRKEQTVSDFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLL 774 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 RV+I DA AD++F+ LMGD+VEPRR FI+ ++L + +D Sbjct: 775 RVQIEDAIAADEVFTTLMGDDVEPRRNFIETHALSAGNID 814 >gi|118578453|ref|YP_899703.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379] gi|118501163|gb|ABK97645.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379] Length = 802 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 379/813 (46%), Positives = 522/813 (64%), Gaps = 21/813 (2%) Query: 1 MSD-----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ Y AD+I++L+GL AV+KRP+MYIG T G GLHH++YE++DN+IDE Sbjct: 1 MSEHNNVTQSNVEEYSADNIKVLEGLAAVRKRPAMYIGSTSGA-GLHHLVYEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ D I+VT+N+DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYK Sbjct: 60 ALAGHCDNISVTINVDGSVTVIDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNDSYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WL+L IKR+G I+ S+ G PL TG A GT+VTF Sbjct: 120 VSGGLHGVGVSVVNALSKWLELEIKRDGKIFRQSYRRGDPVAPLAETG-ATRKRGTKVTF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 +P +IF +F++D L RLREL+FLN+ V+I + D R +Y+GGI +FV Y Sbjct: 179 MPDEEIFETTEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHE-FYYEGGINSFVEY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+R+K + PI +G + + +++M++ND + E + F NNI +GGTHL G ++A Sbjct: 238 LNRNKIAVHPKPIYFRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAA 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + +Y + KK+K S+ GDD REG T V+S+K+P P+F QTK KL +SEV+ Sbjct: 298 LTRTMNAYAAANNLLKKEKVSISGDDLREGLTCVISVKIPQPQFEGQTKTKLGNSEVKGY 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VES +N+ L+ +LEE+P AK I++K ++A+ R+AARRAR+ RRKG LD+ LPGKLA Sbjct: 358 VESMINEKLAQFLEENPQVAKRILEKSIEAARAREAARRARETVRRKGALDLGGLPGKLA 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E++P+ EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE++RFDKM+SSQEI Sbjct: 418 DCQEKNPEHCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKSRFDKMISSQEIR 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D FDI+KLRY +II+MTDADVDG+HI TLLLTFF+R M LI G LY Sbjct: 478 TLITALGTGIGKDDFDISKLRYGRIIVMTDADVDGSHILTLLLTFFYRNMNELIQRGHLY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY + RGK Y+++E +L+++L+ + + + + I + Sbjct: 538 IAQPPLYKVKRGKKEMYLRNEAALQNFLLEEGAEDLVLRLEKGDRKYLGKQIIPVIRQFI 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + ++ + + S++ L + E +E + Sbjct: 598 DNRAIFDKVVKKGISQELLSIIVRS------NVPAGLEELSQVEPYLEAMKELAENGEYQ 651 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 I R + + +L + S + R+ E + I K Sbjct: 652 VEEERIIFYIGNIRAIIDHQIL--GVLASHEYELLVENHRRVVETMADGRAYIEQEAGGK 709 Query: 716 I----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + + LL +KG+ +QRYKGLGEMN QLWETT+NP+ R LL+VKI DA Sbjct: 710 VLLETSNHEELLVYFLENAKKGLGIQRYKGLGEMNPDQLWETTMNPENRVLLQVKIEDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 ++D++F+ LMGD+V+PRREFI+ N+L LDI Sbjct: 770 ESDEIFTILMGDQVDPRREFIETNALNVVNLDI 802 >gi|77917622|ref|YP_355437.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380] gi|77543705|gb|ABA87267.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380] Length = 795 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 395/812 (48%), Positives = 534/812 (65%), Gaps = 26/812 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D Y A SI++L+GL AV+KRP+MYIG T G GLHH++YEV+DN+IDESL G Sbjct: 1 MTD-TNQREYGAGSIKVLEGLSAVRKRPAMYIGST-GVMGLHHLVYEVVDNSIDESLAGV 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V L++DGS TV DNGRGIP D+H + SAAEV+MT LHAGGKF+ SYKVSGGL Sbjct: 59 CDEISVILHLDGSVTVEDNGRGIPVDMHPTQNKSAAEVVMTVLHAGGKFDSDSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R G IY ++ G+ D PL G GT +TF P + Sbjct: 119 HGVGVSVVNALSKKLELEIRRNGRIYRQGYVRGVPDAPLREEGDTT-KRGTRITFWPDPE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF + DF+++TL RLREL+FLN V I ++D+RS + + Y+GGI +FVSYL+R K Sbjct: 178 IFEITDFSFETLSKRLRELAFLNGGVHIHIVDERSEKRHD--FHYEGGIISFVSYLNRAK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL PI G R+ + I++A ++NDGY E + F NNI +GGTHL G ++ALTR + Sbjct: 236 TPLHAEPIFFSGEREGVQIEVAFQYNDGYDEKIFTFANNINTHEGGTHLVGFKAALTRTM 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K K S+ GDD REG +V+S+K+PDP+F QTK KL +SE++ VE+ + Sbjct: 296 NSYATANNLLKNVKASISGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETLI 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ ++EE+P AK I++K ++A+ R+AAR+ARDLTRRKGVLD +LPGKLADC E+ Sbjct: 356 NEKLATFMEENPNVAKRILEKGIEAARAREAARKARDLTRRKGVLDSLALPGKLADCQEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKML+S EI TLITA Sbjct: 416 DPALCEIYLVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSNEIRTLITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG+ FDI+KLRYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G+LYI +PP Sbjct: 476 MGTGIGKGDFDISKLRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYLYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY RGK Y+KDE +L +YL+++ + + V+ + + + ++ + + Sbjct: 536 LYKAKRGKRELYLKDESALTEYLLDEGVDGVTLELKANDKVVRGKQIIPTLRNIIEYNHI 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + G + ++ + L RL A ++ + Sbjct: 596 FSKLVLKGVNSEVLNIFVEGRIRNGFEDMADL---APLVQRLKQAAPHAD--FQLFHEPD 650 Query: 661 DILVK------RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--CNGD 712 IL RI R V E + S +I+E++ ++I + Sbjct: 651 RILFTLGNVRARIDRQVLE-------ILSSHEYHLLLQAWAKIQESHANERAVISMEGKE 703 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + ++ LLD + RKG +QRYKGLGEMN QLWETT++P+ R LL+V++ DA + Sbjct: 704 ESEVNNCQELLDFFQARARKGQYIQRYKGLGEMNPDQLWETTMDPEKRILLQVQVEDAVE 763 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A+++F+ LMGD+VEPRREFI+ N+L LDI Sbjct: 764 ANEIFTVLMGDQVEPRREFIENNALNVSNLDI 795 >gi|148284766|ref|YP_001248856.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong] gi|146740205|emb|CAM80488.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong] Length = 807 Score = 858 bits (2218), Expect = 0.0, Method: Composition-based stats. Identities = 411/804 (51%), Positives = 558/804 (69%), Gaps = 4/804 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N ++ Y+ADSI+IL+GL+AV+ RP MYIGD SGLH +IYEVLDN+ DESL G Sbjct: 7 MPTNTKSDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGD 66 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V LN +GS TV DNGRGIP D+H+EEG+SAA+VIMT+LHAGGKF+Q +YKVSGGL Sbjct: 67 CNKIEVILNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGL 126 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+LRI + + M F NG NPL + G A N GTE+TF PS Sbjct: 127 HGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIA 186 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F++ L+HRLREL+FLNSSV+ SL D+RS E +++ FY GG+E++V Y+D+ K Sbjct: 187 IFTSVEFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAK 246 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + Q +++LAM+WND ++EN++CFTNNI Q+DGG+HL G RSA+TR I Sbjct: 247 AALHSTISFHQTDSHGATVELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAI 306 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 T Y + K+ + GDD REG + VLS+K+PDP+F+SQTK+KLVS E R++VE V Sbjct: 307 TKYTKDH--FPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIV 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L WLE P E K I+ K+ ++++ R+AAR+AR+LTRRK L +A+LPGKLADC +R Sbjct: 365 YEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQR 424 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P+KSELF+VEGDSAGG+AKQGR+R+ QAILPLRGK+LNVERARFDKML S +IGTLITA Sbjct: 425 APEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITA 484 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D F I+K+RYHK+IIMTDADVDG+HIR LLLTFF+R MP++I G+LYI +PP Sbjct: 485 LGTGIGSDDFAIDKIRYHKVIIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPP 544 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RG + Y+K++++L DYL+ ++ EI++ S IS L + K+ + Sbjct: 545 LYKIKRGANELYLKNDQALYDYLLKIAID-EIDVIKSSGDRISNAKLTTIVASIRKLTAV 603 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + +K E I+ + ++ I S L + + +W +++ Sbjct: 604 LNKVGNKLNKYIAEVLAITKNLSADTFNSIYQDKLSSLIQKTLPTQTLDKTNWQVEVHDD 663 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + RG+++ L S + S + E + L+L ++I I+ P Sbjct: 664 YMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENRLTLKHKSEEINISLPS 723 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +LLD + +IG+ G+S+QR+KGLGEMN+ QLWETTL+P+ R+LL+VKITD +A+++FS L Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTL 783 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 M + VEPRREFIQ N+L LD+ Sbjct: 784 MSNIVEPRREFIQANALNVNNLDV 807 >gi|188590798|ref|YP_001795398.1| DNA gyrase subunit b [Cupriavidus taiwanensis LMG 19424] gi|170937692|emb|CAP62676.1| DNA gyrase, subunit B (type II topoisomerase) [Cupriavidus taiwanensis LMG 19424] Length = 841 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 390/845 (46%), Positives = 528/845 (62%), Gaps = 46/845 (5%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ Q ++Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 GY I VT++ D S ++ DNGRGIP D E SAAE+ MT LHAGGKFNQ S Sbjct: 61 AGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156 YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F G + Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGEVQNRIIETVDGPDGQPVEV 180 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +P+ +TG A + GTEV FL +IF+ +F+Y+ L R+RELSFLN+ V I L D+R+ Sbjct: 181 SPMKITG-ATDKRGTEVHFLADEEIFTNVEFHYEVLSKRIRELSFLNNGVHIKLTDQRTG 239 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++R K L + +D I++++AM+WNDGY+E VLCF Sbjct: 240 KE--EDFAFSGGVKGFVEYINRAKTTLHPNIFYANAEKDGIAVEVAMQWNDGYNEQVLCF 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K GDD REG VLS+K+P+ Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSVKVPE 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V+ L+ +L E P +AK I K++DA+ R+AAR+AR Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVSKALTDFLLETPADAKTICGKIVDAARAREAARKAR 417 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGV+D LPGKLADC E+DP +SELFLVEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP +I G++YI +PPLY I GK +Y+KD+ L YL+ ++ + + Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKASLVRP 597 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629 D IS + L + +I D + + + S Sbjct: 598 DGSE-ISGDALTELARQYQLTEGVIGRLSRVVDTDALRAIADGVTLDLDSAAAAEASAVA 656 Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683 + LA A L + + + +++ R G L+ + Sbjct: 657 LKAKLAEMHAKTLIGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVH 716 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739 + + + + + + + +G+S QRY Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGDKLRDQTVNDFHGAMQWLLAEAERGVSRQRY 776 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QL+ETTL+ R LL+V+I DA AD +F+ LMGDEVEPRR FI+ N+L + Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836 Query: 800 -ALDI 803 +D+ Sbjct: 837 RNIDV 841 >gi|113866034|ref|YP_724523.1| DNA gyrase subunit B [Ralstonia eutropha H16] gi|113524810|emb|CAJ91155.1| DNA gyrase subunit B [Ralstonia eutropha H16] Length = 841 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 388/845 (45%), Positives = 530/845 (62%), Gaps = 46/845 (5%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ Q ++Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 GY I VT++ D S ++ DNGRGIP D E SAAE+ MT LHAGGKFNQ S Sbjct: 61 AGYCTEIQVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156 YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F G + Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVHLIEFAKGDVQNRIVETVTGPDGQPVEV 180 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +P+ + G A + GTEV FL +IF+ +F+Y+ L R+RELSFLN+ V I L+D+R+ Sbjct: 181 SPMKIIG-ATDKRGTEVHFLADEEIFTNVEFHYEILSKRIRELSFLNNGVHIKLVDQRTG 239 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++R K L + +D I++++AM+WNDGY+E VLCF Sbjct: 240 KE--EDFAFSGGVKGFVEYINRSKSVLHPNIFYANTEKDGIAVEVAMQWNDGYNEQVLCF 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K GDD REG + VLS+K+P+ Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETTGDDMREGLSCVLSVKVPE 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K++DA+ R+AAR+AR Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVGKALNDFLLETPGDAKIICGKIVDAARAREAARKAR 417 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKG++D LPGKLADC E+DP SELFLVEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 418 EMTRRKGLMDGMGLPGKLADCQEKDPALSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP +I G++YI +PPLY I GK +Y+KD+ L YL+ ++ + + + Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKAVLVRP 597 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629 D I+ + L + +I D + + + S Sbjct: 598 DGSE-INGDALTELARQYQLTEGVISRLSRVVDTDALRAIADGVPLDLDSAAAAEASAVA 656 Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683 + LA A L + + + +++ R G L+ + Sbjct: 657 LKAKLAEMHAKTLIGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHLDADFVH 716 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDK----IKITGPCSLLDTIFSIGRKGISMQRY 739 + + + + + + + + +G+S QRY Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGEKLRDQTVNDFHGAMQWLLAEAERGVSRQRY 776 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QL+ETTL+ R LL+V+I DA AD +F+ LMGDEVEPRR FI+ N+L + Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836 Query: 800 -ALDI 803 +D+ Sbjct: 837 RNIDV 841 >gi|145588192|ref|YP_001154789.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046598|gb|ABP33225.1| DNA gyrase subunit B [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 832 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 397/836 (47%), Positives = 530/836 (63%), Gaps = 37/836 (4%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L G Sbjct: 1 MTEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYK 115 Y ITV + D S ++ DNGRG+PT + E SAAE++MT LHAGGKF+Q SYK Sbjct: 61 YCSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIVMTELHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF------------INGILDNPLVVTG 163 VSGGLHGVGVS VNALS WLKL I+R+G + M F +G++ +P+ VTG Sbjct: 121 VSGGLHGVGVSCVNALSKWLKLTIRRDGKAHYMEFARGVIQNRNVVDEDGVMVSPITVTG 180 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 +GTEV FL IF +F+Y+ L R+RELSFLN+ V I LID+R+ + Sbjct: 181 DTE-LSGTEVHFLADETIFGNVEFHYEILVKRIRELSFLNNGVHIKLIDQRTGQE--EDF 237 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTN 278 + GG++ FV Y+++ K L + +G R I+ +++M+WND + E VLCFTN Sbjct: 238 AFSGGVKGFVEYINQTKNVLHPNIFYAEGVRPSDLGGQITAEVSMQWNDSFSEQVLCFTN 297 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y++++ +KK K + GDD REG VLS+K+P+P+ Sbjct: 298 NIPQRDGGTHLTGLRAAMTRVINKYIDENEVAKKAKVEISGDDMREGLACVLSVKVPEPK 357 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR VE V + LSA+L+E P +AKI+ K++DA+ R+AAR+ARD+ Sbjct: 358 FSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAARKARDM 417 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP KSELF+VEGDSAGGSAKQGR R QAILPL+GKIL Sbjct: 418 TRRKGVLDGLGLPGKLADCQEKDPTKSELFIVEGDSAGGSAKQGRDRRFQAILPLKGKIL 477 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+ARFDKML+SQE+ TLIT LGTGIG + + +KLRYH+IIIMTDADVDG+HIRTLLL Sbjct: 478 NVEKARFDKMLASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHIRTLLL 537 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TFF+RQMP LI G +YI +PPLY + GK+ QY+KD+ L L+ +L Sbjct: 538 TFFYRQMPELIERGHIYIAQPPLYKVKFGKNEQYIKDDNELNQLLLKIALETASLQTPT- 596 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LA 635 VI L I ++ D+ + N ++++ N S L Sbjct: 597 GEVIEGESLNELAKHYQVIQSIVDRLSRTIDEDALRAIASGTQLNLDTEKSANESADRLR 656 Query: 636 SKLANRLNFIAEKSEKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 LA+ LN +A E +L+ R G + + + + Sbjct: 657 QALADSLNPLALPPEIIVQKEDRTERFRLLLSRRIHGNLKLSTINSDFVHGDDYQSLANA 716 Query: 694 SNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + L + + I + + S + +S QRYKGLGEMN S Sbjct: 717 AAVLSGKVLPGTKVRRGDPDKNQKEQTINDFRAAFSWLLSEAERVLSRQRYKGLGEMNPS 776 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++ +R+LL+VKI DA AD +F+ LMGDEVEPRR FI++N+L + LD+ Sbjct: 777 QLWETTMDASSRTLLQVKIEDAIAADQVFTTLMGDEVEPRRAFIEKNALIARNLDV 832 >gi|124265196|ref|YP_001019200.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1] gi|124257971|gb|ABM92965.1| DNA gyrase subunit B [Methylibium petroleiphilum PM1] Length = 851 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 387/825 (46%), Positives = 524/825 (63%), Gaps = 34/825 (4%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 34 ASVAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 93 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 94 VTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 152 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168 HGVGVS VNALS WL+L ++REG ++ M F G +P+ + G Sbjct: 153 HGVGVSCVNALSKWLRLTVRREGKVHLMEFRRGFPQDRVLEMRNGFEVSPMAIVGDTE-K 211 Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP +IF+ DF+YD L RLRELSFLN+ V+I L+D+R+ + Y GG Sbjct: 212 RGTEVHFLPDEEIFTNIDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKE--DNFAYAGG 269 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283 ++ FV +++ KK L + G + NI +++AM+WNDGY E VLCFTNNIPQ+ Sbjct: 270 VKGFVEFINTGKKVLHGNIFHALGDKMSEFNTNIGVEVAMQWNDGYSEQVLCFTNNIPQR 329 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+GLR+A+TR I Y+E + +KK K + GDD REG V+S+K+P+P+FSSQT Sbjct: 330 DGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEIAGDDMREGLACVVSVKVPEPKFSSQT 389 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR VE V L+ +L E+P++AKII K+++A+ R+AAR+AR++TRRKG Sbjct: 390 KDKLVSSEVRGPVEEIVGKLLTDYLLENPIDAKIICGKIVEAARAREAARKAREMTRRKG 449 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 VLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVERA Sbjct: 450 VLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVERA 509 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RF+K+L+S EI TLITALGT IG+D ++ +KLRYH+IIIMTDADVDGAHIRTLLLTFF+R Sbjct: 510 RFEKLLTSNEILTLITALGTSIGKDEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 569 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 QMP L+ G +YI +PPLY + GK QY+KD L+ YL+ +L + V+ Sbjct: 570 QMPELVERGHIYIAQPPLYKVKLGKEEQYLKDGHELDAYLLRVALRDARLETGVGGTVLL 629 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN 643 + L + + + + D + V N ++ + S A+ A + Sbjct: 630 GDALESLARQYVLANNVTARLANWMDVEALRAIADGLVLNLDTLADAETSAAALKAALHD 689 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 + ++ + + R G + V+ + + + T Sbjct: 690 A---DVSAEFDARLDKHLLRISRRHHGNTKSSVITADFVHGADYEALSTAGLAFKGLVST 746 Query: 704 ILSLICNGDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + + K+ + + + QRYKGLGEMN QLWETT++P Sbjct: 747 EAVVKKGEGEKQKDAKVADFREAMAWLMQQAENSVGRQRYKGLGEMNPEQLWETTMDPTV 806 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + +D+ Sbjct: 807 RRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAANIDV 851 >gi|189183732|ref|YP_001937517.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda] gi|189180503|dbj|BAG40283.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda] Length = 807 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 411/804 (51%), Positives = 560/804 (69%), Gaps = 4/804 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N + Y+ADSI+IL+GL+AV+ RP MYIGD SGLH +IYEVLDN+ DESL G Sbjct: 7 MPTNTKLDQYNADSIKILRGLEAVRVRPGMYIGDISNGSGLHQLIYEVLDNSTDESLAGG 66 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VTLN +GS TV DNGRGIP D+H+EEG+SAA+VIMT+LHAGGKF+Q +YKVSGGL Sbjct: 67 CNKIEVTLNKNGSVTVRDNGRGIPVDIHQEEGVSAAQVIMTQLHAGGKFDQNAYKVSGGL 126 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+LRI + + M F NG NPL + G A N GTE+TF PS Sbjct: 127 HGVGVSVVNALSDWLELRIWKNNQEHFMRFNNGEPQNPLSIVGEAPNKQGTEITFYPSIA 186 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +F++ L+HRLREL+FLNSSV+ SL D+RS E +++ FY GG+E++V Y+D+ K Sbjct: 187 IFTSVEFSFSELEHRLRELAFLNSSVEFSLTDERSSEVKDVKFFYTGGVESYVQYIDKAK 246 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + Q +++LAM+WND ++EN++CFTNNI Q+DGG+HL G RSA+TR I Sbjct: 247 AALHSTISFHQTDSHGATLELAMQWNDSFYENIVCFTNNIRQRDGGSHLQGYRSAVTRAI 306 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 T Y + K+ + GDD REG + VLS+K+PDP+F+SQTK+KLVS E R++VE V Sbjct: 307 TKYTKDH--FPKNNINYNGDDIREGLSCVLSLKLPDPKFASQTKDKLVSPEARAIVEGIV 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L WLE P E K I+ K+ ++++ R+AAR+AR+LTRRK L +A+LPGKLADC +R Sbjct: 365 YEKLVEWLEHRPSEGKKIIAKITESALAREAARKARELTRRKSALGVANLPGKLADCQQR 424 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P+KSELF+VEGDSAGG+AKQGR+R+ QAILPLRGK+LNVERARFDKML S +IGTLITA Sbjct: 425 APEKSELFIVEGDSAGGTAKQGRNRKFQAILPLRGKVLNVERARFDKMLQSDQIGTLITA 484 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D F I+K+RYHK++IMTDADVDG+HIR LLLTFF+R MP++I G+LYI +PP Sbjct: 485 LGTGIGSDDFAIDKIRYHKVVIMTDADVDGSHIRALLLTFFYRYMPTVIEKGYLYIAQPP 544 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RG + Y+K++++L DYL+ ++ EI++ S IS +L + K+ + Sbjct: 545 LYKIKRGANELYLKNDQALYDYLLKIAID-EIDVIKSSGDRISNAELTTIVASIRKLTVV 603 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + +K E I+ + ++ I S L ++ + +W +++ Sbjct: 604 LNKVGNKLNKYIAEVLAITRNLSADTFNSIYQDKLSSLIQQMLPTQTLDKTNWQVEVHDD 663 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + RG+++ L S + S + E + L+L ++I I+ P Sbjct: 664 YMQFYCFVRGIKKAQSLFKSQLESPEFVSLIRLGQELSELFENRLTLKHKSEEINISLPS 723 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +LLD + +IG+ G+S+QR+KGLGEMN+ QLWETTL+P+ R+LL+VKITD +A+++FS L Sbjct: 724 ALLDKLLAIGKHGMSIQRFKGLGEMNSDQLWETTLDPENRTLLQVKITDFDEAEEVFSTL 783 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 M + VEPRREFIQ N+L LD+ Sbjct: 784 MSNIVEPRREFIQANALNVNNLDV 807 >gi|332286197|ref|YP_004418108.1| DNA gyrase subunit B [Pusillimonas sp. T7-7] gi|330430150|gb|AEC21484.1| DNA gyrase subunit B [Pusillimonas sp. T7-7] Length = 816 Score = 857 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 388/821 (47%), Positives = 525/821 (63%), Gaps = 23/821 (2%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD N + Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+L Sbjct: 1 MSDQTTNVAAAGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYK 115 GY D I VT++ D S +VSDNGRGIPTD+HK E G SAAE++MT LHAGGKF+ SYK Sbjct: 61 AGYCDDIVVTIHADNSISVSDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDHNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVS VNALS WL+L I R G ++EM F G PL VTG A + +GT V F Sbjct: 121 VSGGLHGVGVSCVNALSQWLRLSISRNGQLHEMEFRRGERVEPLAVTG-AIDASGTRVQF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 L + IF +++Y+ L RLRELSFLN+ V+I LID+R+ + + GG++ FV Y Sbjct: 180 LADAQIFENIEYSYEILAKRLRELSFLNNGVKIRLIDERNDKE--ENFAFLGGVKGFVEY 237 Query: 236 LDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 ++R K L + + I +D+AM+WND Y E VLCFTNNIPQ+DGGTHL+G Sbjct: 238 INRAKTVLHANVFSVSTESVVGDATIGVDVAMQWNDSYSETVLCFTNNIPQRDGGTHLTG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LR+A+TR + Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSSE Sbjct: 298 LRAAMTRVLNKYIADNELAKKAKVDTTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR VE V L WL E+P +AK + KV++A+ RDAAR+AR++TRRK VL+ A LP Sbjct: 358 VRPAVEEAVARTLETWLLENPNDAKALCNKVIEAARARDAARKAREMTRRKSVLEGAGLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++S Sbjct: 418 GKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIAS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 ++I TLITALGT IG F+I+KLRYH+IIIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 EQITTLITALGTSIG-PDFNIDKLRYHRIIIMTDADVDGAHIRTLLLTLLYRQMPELVER 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY + G+ +Y+KD+ +++ +L + + IS + L Sbjct: 537 GHIYIAQPPLYKVKVGREERYLKDDAEEAQFMLQVALKDAALFVKEGADPISGDALAELA 596 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + D +I D + N +D + + A +L ++ A + Sbjct: 597 RQYILADSVINRLSRTFDIEALSAMAEGVEINL-TDADQAAASAQRLFKAIDDPAVPNGV 655 Query: 652 SWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + N +++ R+ G + + + + + + Sbjct: 656 TVNVEANEEGDAWRLVLNRMHHGNVRVTIFDRAFVRGADYAVLSKAAQTFTGLTGPGAQI 715 Query: 708 ICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + + I+ + + S + IS QRYKGLGEMN QLWETT++P R LL Sbjct: 716 VRGEGDRRKEKHISDFREAMQFLRSEADRSISKQRYKGLGEMNPQQLWETTMDPSVRRLL 775 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 RV+I DA AD++F+ LMGD VEPRR FI+ ++L + +D+ Sbjct: 776 RVQIEDAIAADEIFTTLMGDNVEPRRAFIETHALQAGNIDV 816 >gi|319790160|ref|YP_004151793.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1] gi|317114662|gb|ADU97152.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1] Length = 804 Score = 857 bits (2213), Expect = 0.0, Method: Composition-based stats. Identities = 378/810 (46%), Positives = 523/810 (64%), Gaps = 13/810 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +YDA +I++L+GL+AV+KRP MYIGDT G GLHH+++EV+DN++DE+L GY Sbjct: 1 MAQK--QDNYDASAIKVLEGLEAVRKRPGMYIGDT-GVYGLHHLVFEVVDNSVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+DNGRGIP D+H E G AAE+++T LHAGGKF +K+YK SGGL Sbjct: 58 CTEIEVTIHPDNSITVADNGRGIPVDIHPEYGKPAAEIVLTVLHAGGKFEKKAYKYSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WLKL I R+G +Y+ + G G N GT +TF P + Sbjct: 118 HGVGVSVVNALSEWLKLEIHRDGKVYKQVYERGKPVTQFTCVG-TSNKRGTIITFKPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF V +F++D L +RLREL+FLN ++I+L D+R P+ +Y+GGI FV ++ K Sbjct: 177 IFEVTEFSWDILANRLRELAFLNKGLKITLTDERVDPPKREVFYYEGGIVEFVKKINEKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL PI I G +D+I +++A+++N Y E + F NNI ++GGTH+SG RSALTR I Sbjct: 237 DPLFPEPIYITGEKDDILVEVALQYNSTYTEQIFSFVNNINTREGGTHVSGFRSALTRAI 296 Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 T ++E+ K+ K S+ GDD REG +V+S+K+P+P+F QTK KL +SEVR VV S Sbjct: 297 TKFIEEHNLLPKNSKISITGDDTREGLVAVISVKVPNPQFEGQTKAKLGNSEVRPVVASV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L +L E P + I +KV+ A+ R+AA+RAR+LTRRK L+ SLPGKLADCSE Sbjct: 357 VYEKLWNYLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKLADCSE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+K+ELFLVEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR +K+LS+ EI T+IT Sbjct: 417 RDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEIKTIIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTG+G++ FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFFFRQ P ++ G LYI +P Sbjct: 477 ALGTGVGKN-FDISKLRYNKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK Y+K ++ LE ++ +L L + + D + + K+ + Sbjct: 536 PLYRLKKGKKEMYIKSDKELESVILEFALDSVKLLDPQGNP-LKEEDAKEVVKKLAKLQE 594 Query: 600 LIKDFYPNHDKTFIEQAVISGV-FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 LI D I + + + +E L +L L + E S + Sbjct: 595 LIAILSKRRDPQIINLLIRAQADYRELYTREGVEGLIERLRKLLPPELKGIEFKPVESPD 654 Query: 659 N---SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKI 714 I + + ++++ ++ + + S + R I + G ++ Sbjct: 655 ECAFKIIATVPLDKYLKKEVTIDENLLISDLYRQARKLKGEIRAKLGEPPYKAQKKGKEL 714 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L + GR+GI +QRYKGLGEMN QLWETT+NP+ R+LL+V + DA AD Sbjct: 715 TFKTLEELYTFLIDSGREGIYIQRYKGLGEMNPEQLWETTMNPENRTLLKVTVEDAVSAD 774 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++F+ LMGD+VEPRREFIQ+ + LD+ Sbjct: 775 EVFTVLMGDKVEPRREFIQKFAKEVRNLDV 804 >gi|293602697|ref|ZP_06685138.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter piechaudii ATCC 43553] gi|292818888|gb|EFF77928.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Achromobacter piechaudii ATCC 43553] Length = 815 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 384/820 (46%), Positives = 533/820 (65%), Gaps = 24/820 (2%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD +NS Y ADSI++LKGL+AV+KRP MYIGDT +GLHHM++EV+DNAIDE+ Sbjct: 1 MSDQQNTTSENSGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSY 114 L G+ D I VT++ D S +V+DNGRGIPTD+HK E SAAE++MT LHAGGKF+Q SY Sbjct: 61 LAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFHRSAAEIVMTELHAGGKFDQNSY 120 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS WL+L I+R G +++M F G PL VTG + GTEV Sbjct: 121 KVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGARVAPLAVTG-TTDMRGTEVR 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FL IF+ +++Y+ L RLRELSFLN+ V+I L+D+R + + GG++ FV Sbjct: 180 FLADPIIFNNIEYHYEILSKRLRELSFLNNGVKIRLVDQRQGKE--ENFAFSGGVKGFVE 237 Query: 235 YLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 Y++R K L + + ++ +++AM+WND Y E+VLCFTNNIPQ+DGG+HL+ Sbjct: 238 YINRAKTVLHPNVFSVSTESAAGGVSVGVEVAMQWNDSYSESVLCFTNNIPQRDGGSHLT 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GLR+A+TR I Y+ + +KK K GDD REG VLS+K+P+P+FSSQTK+KLVSS Sbjct: 298 GLRAAMTRIINKYIADNELAKKAKVETSGDDMREGLACVLSVKVPEPKFSSQTKDKLVSS 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR VE V L +WL E+P +AK + K+++A+ R+AAR+AR++TRRK VL+ A L Sbjct: 358 EVRPAVEEAVARTLESWLLENPNDAKALCNKIVEAARAREAARKAREMTRRKSVLEGAGL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ARFD++++ Sbjct: 418 PGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIA 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S++I TLITALGT IG F++ KLRYH++IIMTDADVDGAHIRTLLLT +RQMP L+ Sbjct: 478 SEQIATLITALGTSIG-PDFNVEKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVQ 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI +PPLY + G+ +Y+KD++ +++ +L + + +I +L + Sbjct: 537 RGYVYIAQPPLYKVKVGREERYLKDDQEEAQFMLQLALKDAEII--SGGNIIRGEELTDL 594 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ---EINVSLASKLANRLNFIAE 647 + D +I D + N E+ + + LA + + ++ Sbjct: 595 ASQYVAADGVIARLSKVFDVGALSAMAEGVEINLETAESTADSAKRLADAMRDPVSGNGV 654 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILS 706 + + + V+R+ G +++ I + + + L+ Sbjct: 655 DVVPQFDEATERHRLSVQRMHHGNVRVSIIDADFINGTDYTILSKAAKSFLGKVGPRSLA 714 Query: 707 LICNGDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 GDK K ++ + + S + IS QRYKGLGEMN QLWETT++P R LL Sbjct: 715 ARGEGDKRKEQVVSDFREAMQWLRSEADRSISKQRYKGLGEMNPEQLWETTMDPKVRRLL 774 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 RV+I DA AD++F+ LMGD+VEPRR FI+ N+L + +D Sbjct: 775 RVQIEDAIAADEVFTTLMGDDVEPRRAFIERNALSAGNID 814 >gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] Length = 832 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 382/827 (46%), Positives = 524/827 (63%), Gaps = 32/827 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q++ Y A SIQIL+GL+AV+KRP MYIGDT +GLHH ++EVLDN+IDESL G+ Sbjct: 11 QPQSAQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESLAGHCTE 70 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 I VT++ D S +++DNGRGIPT + E SAAE++MT LHAGGKF+Q SYKVSGG Sbjct: 71 IHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSGG 130 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGN 167 LHGVGVS VN LS LKL I+R+G +EM F+ G+ +P+ V G + Sbjct: 131 LHGVGVSCVNGLSKLLKLTIRRDGKKHEMEFVRGVPQNREVETIDGMVVSPIKVVGDT-D 189 Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV F +IF+ +F+YD L R+RELSFLN+ V I L D+R+ + ++G Sbjct: 190 KRGTEVHFWADEEIFTNVEFHYDILAKRIRELSFLNNGVHIKLSDQRTGKE--EDFAFEG 247 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNIPQ 282 G FV Y+++ K L + + G R NI++D++M+WND Y+E VLCFTNNIPQ Sbjct: 248 GTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNITVDVSMQWNDAYNEQVLCFTNNIPQ 307 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +DGGTHL+GLR+A+TR I Y+++ +KK K + GDD REG T VLS+K+P+P+FSSQ Sbjct: 308 RDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEISGDDMREGLTCVLSVKVPEPKFSSQ 367 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK+KLVSSEVR VE V L+ +L+E P +AKII K+++A+ R+AAR+ARDLTRRK Sbjct: 368 TKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKARDLTRRK 427 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 GV+D L KLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNVE+ Sbjct: 428 GVMDGLGLSAKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEK 487 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 ARF+KML+S++I TLI LGT IG D F+I KLRYH+IIIMTDADVDGAHIRTLLLT + Sbjct: 488 ARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRTLLLTLLY 547 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 RQMP L+ G +YI +PPLY + GK +Y+KD+ Y++ +L++ + + I Sbjct: 548 RQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALIPSEGAQPI 607 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642 + + L + + +I D + A+++GV S E + A +L + Sbjct: 608 AGDALAELVRQYNMANAIINRLTRAVDGAALT-AIMTGVTLDLSSVEAAQASAQRLEQGI 666 Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 N A + + R+ G + ++ + + + + Sbjct: 667 NEPAVTVTVKSDELSGKHTLRINRMYHGNVKASSIDSDFVTGPDYTVLAAAAATFK-GLI 725 Query: 703 TILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757 +L+ G I+ ++ + S + + QRYKGLGEMN QLWETT++P Sbjct: 726 GPGALVQRGAGEKAKVSAISDFHQAMNWLRSEAERNVGKQRYKGLGEMNPEQLWETTMDP 785 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L + +DI Sbjct: 786 AVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 832 >gi|258593678|emb|CBE70019.1| DNA gyrase subunit B [NC10 bacterium 'Dutch sediment'] Length = 826 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 367/805 (45%), Positives = 512/805 (63%), Gaps = 16/805 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA I+IL+GL+AV+KRP+MYIG T G GLHH++YEV+DN++DE+L GY D + VT++ Sbjct: 27 YDAAQIRILEGLEAVRKRPAMYIGST-GFDGLHHLVYEVVDNSVDEALAGYCDQVDVTIH 85 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S +V DNGRGIP D+H++ G A EV+MT LHAGGKF+ +YKVSGGLHGVG+SVVN Sbjct: 86 SDNSVSVLDNGRGIPVDIHEQTGRPAVEVVMTTLHAGGKFDNSAYKVSGGLHGVGLSVVN 145 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 AL+ L++ I R+G Y + G L G A TGT VTF+P S+IF + F+ Sbjct: 146 ALAEQLEVEIWRDGKRYLQQYERGKPTGDLEEVGKA-RKTGTRVTFIPDSEIFEDRTFSL 204 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 DTL +RLREL+FLN ++I L D+R E R +Y GGI +FV L+ +K L PI Sbjct: 205 DTLSNRLRELAFLNKGLRIRLTDERINEAR--EFYYTGGIRSFVELLNENKVVLHPKPIH 262 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 I+ RD +++A+++NDGY E V F NNI DGGTHL G RSALTR I SY Sbjct: 263 IEVQRDPTVVEVAIQYNDGYGETVFSFANNINTHDGGTHLIGFRSALTRTINSYAASHDL 322 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 K K +V GDD REG T+V+S+K+P+P+F QTK +L + +++ +VE+ VN+ L+ +LE Sbjct: 323 LKNLKATVTGDDIREGLTAVISVKLPNPQFEGQTKARLNNPDMKGLVETIVNEKLAEYLE 382 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429 E+P+ + IV+K +A+ R+AAR+A++L RRKG LD LPGKLADCSE+DP EL++ Sbjct: 383 ENPVIGRRIVEKATEAARAREAARKAKELARRKGPLDGDGLPGKLADCSEKDPALCELYI 442 Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489 VEGDSAGGSAKQGR R QAILPLRGKILN ERAR DKMLSS EI LI+ALG GI Sbjct: 443 VEGDSAGGSAKQGRDRRFQAILPLRGKILNTERARADKMLSSAEIRVLISALGAGI-DPE 501 Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 FD+ +LRYH+II+MTDADVDG HIRTLLLTFFFR + ++ G LYI +PPLY I RGK+ Sbjct: 502 FDLGRLRYHRIILMTDADVDGEHIRTLLLTFFFRHLREIVEGGHLYIAQPPLYKIKRGKA 561 Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 +Y+K++ ++E++L+ + D + + L + + ++ Sbjct: 562 ERYLKNDRAMEEFLLETAGETLRVDGGDRETTWTGQRLVGILRKLMVWQSCLRTMERRGR 621 Query: 610 KTFIEQA------VISGVFNCESDQEINVS-LASKLANRLNFIAE-KSEKSWHGSINNSD 661 + A V+ G E ++ L L +R + + + W Sbjct: 622 HPGVVAALAQAGGVLHGTLKDEDKTYRLLARLLETLRSRADRLGPAEGRAEWDEEQEAYR 681 Query: 662 ILVKRIARGVQEQFV--LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +++ + G ++ V ++ + + S + + + + +GD Sbjct: 682 LILSFGSNGKGQRGVTTIDQTLVGSPEYRELEGAAAALSGLGEPPFKIAADGDITPAESW 741 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LLD ++ RKG+++QRYKGLGEMN QLW+TT+NP++R+LLRV + DA A+ +F+ Sbjct: 742 SDLLDKSMTLARKGLTIQRYKGLGEMNPEQLWQTTMNPESRTLLRVAVEDAVAAEQIFTT 801 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR FI+ ++L + LDI Sbjct: 802 LMGDQVEPRRLFIERHALEASNLDI 826 >gi|73539709|ref|YP_294229.1| DNA gyrase subunit B [Ralstonia eutropha JMP134] gi|72117122|gb|AAZ59385.1| DNA gyrase subunit B [Ralstonia eutropha JMP134] Length = 841 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 387/845 (45%), Positives = 529/845 (62%), Gaps = 46/845 (5%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ Q ++Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTEQQNPQQENTYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 GY ITVT++ D S ++ DNGRGIP D E SAAE+ MT LHAGGKFNQ S Sbjct: 61 AGYCTEITVTIHSDNSISIVDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156 YKVSGGLHGVGVS VNALS WL+L ++R+G ++ + F G + Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGKVHLIEFAKGDVQNRIIETVNGPDGQPVEV 180 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +P+ + G + GTEV FL +IF+ +F+Y+ L R+RELSFLN+ V I L+D+R+ Sbjct: 181 SPMKIIGDT-DKRGTEVHFLADEEIFTNVEFHYEILSKRIRELSFLNNGVHIKLVDQRTG 239 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++R K L + +D I+++++M+WNDGY+E VLCF Sbjct: 240 KE--EDFAFSGGVKGFVEYINRAKTVLHPNIFYANAEKDGIAVEVSMQWNDGYNEQVLCF 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K GDD REG VLS+K+P+ Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEIAKKAKVETSGDDMREGLACVLSVKVPE 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V+ L+ +L E P +AK I K++DA+ R+AAR+AR Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVSKALNDFLLETPNDAKTICGKIVDAARAREAARKAR 417 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGV+D LPGKLADC E+DP +SELFLVEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAQSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDKMLSSQE+ TLITALGTGIG+D ++++KLRYH+IIIMTDADVDG+HIRTL Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP +I G++YI +PPLY I GK +Y+KD+ L YL+ ++ + + + Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDVELNAYLLKLAMEKAVLVRP 597 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-------SDQE 629 D I+ + L + +I D + + + S Sbjct: 598 DGTE-INGDALTELARQYQLTEGVIGRLSRIVDTDALRAIADGVTLDLDSAPAAEASAVA 656 Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683 + LA A L + + + +++ R G ++ + Sbjct: 657 LKTKLAEMHAKTLLGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHMDADFVH 716 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739 + + + + + + S +G+S QRY Sbjct: 717 GADYAALSNAAKTFQGLTPEGTKVQRGEGDKMRDQTVNDFHGAMQWLLSEAERGVSRQRY 776 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QL+ETTL+ R LL+V+I DA AD +F+ LMGDEVEPRR FI+ N+L + Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836 Query: 800 -ALDI 803 +D+ Sbjct: 837 RNIDV 841 >gi|148244172|ref|YP_001218866.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA] gi|146325999|dbj|BAF61142.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii HA] Length = 805 Score = 855 bits (2210), Expect = 0.0, Method: Composition-based stats. Identities = 398/807 (49%), Positives = 558/807 (69%), Gaps = 8/807 (0%) Query: 1 MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS + Y A SI++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDESL Sbjct: 1 MSKKQSQNSQEYKASSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDESLA 60 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I + ++ D S +++DNGRGIP D+H EEGISAAEVIMT LHAGGKF+ SYKVSG Sbjct: 61 GYCSKINIIIHEDKSVSINDNGRGIPIDIHPEEGISAAEVIMTILHAGGKFDNNSYKVSG 120 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVNALS W+KL + R IY + G+ + P+ V G + N TGT + F P+ Sbjct: 121 GLHGVGISVVNALSEWVKLTVYRNNKIYYQHYNKGVPEKPIQVIGKS-NKTGTIIHFKPN 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IFS +FNYD L +R+RELSFLNS V I + + ++ YKGGI++F+ +L++ Sbjct: 180 INIFSNTEFNYDILANRIRELSFLNSGVHIGI--EEFSTEKKDIFKYKGGIKSFIKHLNK 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K P+ I I R+ I I +A++W+D Y +++ CFTNNIPQ++GG+HL+G R LTR Sbjct: 238 TKTPIHNDIIEINTQREKIKIVVALQWSDSYQQSIYCFTNNIPQRNGGSHLAGFRGGLTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y++ S +KK+K S+ G+D REG T++++IK+PDP+FSSQTK+KLVSSEVR+ +ES Sbjct: 298 TVNNYIDNSDIAKKEKNSITGEDTREGLTAIINIKIPDPKFSSQTKDKLVSSEVRAPIES 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +ND L+ + E+P EAKII+KK+LDAS R+AAR+AR++TRRKG+ DI+SLPGKL+DC Sbjct: 358 IINDKLNDYFLENPKEAKIIIKKILDASRARNAARKAREITRRKGLFDISSLPGKLSDCQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P +SE+FLVEGDSAGGSAKQGR+R QAILPL+GKILNVE++RF+K+LSS E+GTLI Sbjct: 418 TKNPVESEIFLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKSRFEKILSSAEVGTLI 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG++ +++NKLRYHKI+IMTDADVDGAHIRTLLLTFF+R +P LI NG+LYI + Sbjct: 478 TALGCGIGKEEYNLNKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLPELIENGYLYIAR 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY I +GK +Y+K+++ L DYL+ + ++ IS +L I + KI+ Sbjct: 538 PPLYKIKKGKQERYLKNDQELNDYLLQEGINNSYLFVSKKTPPISGIELEFLIKEYYKIN 597 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-IAEKSEKSWHGSI 657 K+ +++ ++ S + ++ + + + L LN + + + Sbjct: 598 KIFDKLSKHYNLNLLKAISNSKPIDDLTNHKNMNTWCTNLTKNLNKNLTLEKTHKVIFNK 657 Query: 658 NNSDILVKRIARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 N +++ GV +L SF + + FS +IE + KI++ Sbjct: 658 NTNEVEYTLYVYGVNIDHTILNSVFFNSFDYQSIKEFSKKIENVITQESYVKNINKKIRV 717 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +++ + + RKG S QRYKGLGEMN QLWETT++P+ R+L +VKI D+ +D++ Sbjct: 718 QYFSHVVEFLMNNARKGQSFQRYKGLGEMNPKQLWETTMDPEQRTLFKVKIEDSIISDEV 777 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 FS LMGD VEPRR FI++N+L LD Sbjct: 778 FSTLMGDAVEPRRNFIEDNALSVNNLD 804 >gi|149185061|ref|ZP_01863378.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21] gi|148831172|gb|EDL49606.1| type IIA topoisomeraseB subunit [Erythrobacter sp. SD-21] Length = 841 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 420/849 (49%), Positives = 558/849 (65%), Gaps = 54/849 (6%) Query: 1 MSDNI--------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M +N + ++YD+DSI++LKGLDAV+KRP MYIGDTD SGLHHM++EV DNA Sbjct: 1 MDENTPESGENAPKKNAYDSDSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--- 109 IDE+L G+ D++ + LN DGS +V DNGRGIP D+HKEEG+SAAEVIMT+LHAGGKF Sbjct: 61 IDEALAGHCDLVLIELNADGSVSVEDNGRGIPVDMHKEEGVSAAEVIMTQLHAGGKFENT 120 Query: 110 -NQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN- 167 + +YKVSGGLHGVGVSVVNALS WL+L I R+G + M F +G L V G A Sbjct: 121 SDDNAYKVSGGLHGVGVSVVNALSEWLELVIWRDGKEHWMRFEHGDAVESLRVVGDAPPV 180 Query: 168 ---------DTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217 GT VTF S + F ++++D L+HR REL+FLNS V+I L D R E Sbjct: 181 ASNGDENGLKKGTRVTFKASEETFKNVIEYDFDKLEHRYRELAFLNSGVRILLRDNRPEE 240 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFT 277 P E +FY+GGI AFV YLDR+K+ L+ PI + ++ I ID+A+ WND Y+ENVLCFT Sbjct: 241 PLEHDLFYEGGIAAFVKYLDRNKQALVAEPISVSAEKEGIGIDVALEWNDSYYENVLCFT 300 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 NNIPQ+DGGTHL+ R+ALTR + +Y S KK+K S+ G+D REG T+++S+K+PDP Sbjct: 301 NNIPQRDGGTHLAAFRAALTRTLNNYATASGLMKKEKVSLSGEDMREGLTAIVSVKLPDP 360 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 +F SQTK+KLVSSEVR +ES + + ++ WLEE+P +AK I++KV+DA A R Sbjct: 361 KFGSQTKDKLVSSEVRQPLESLMGEKMTEWLEENPNDAKQIIQKVIDA-AAAREAARRAR 419 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 RKG + IASLPGKL+DC ERD K+ELFLVEGDSAGGSAK GR + QAILPL+GKI Sbjct: 420 EMSRKGAMSIASLPGKLSDCRERDASKAELFLVEGDSAGGSAKNGRDSQYQAILPLKGKI 479 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 LNVERARFD+++SS+E+GTLI A+GTG+ +D F++ KLRYHKI+IMTDADVDGAHIRTLL Sbjct: 480 LNVERARFDRIISSKEVGTLIQAMGTGL-RDEFNLEKLRYHKIVIMTDADVDGAHIRTLL 538 Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 LTFF RQMP ++ G L+I +PPLY +TRGKS Y+KD+ + + YLI LS I Sbjct: 539 LTFFHRQMPEIVKAGHLFIAQPPLYKVTRGKSEVYLKDQPAFDRYLIEAGLSGRILE--T 596 Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 G + DL + AL++ + ++ +E I+G + E + SK Sbjct: 597 GSGPRASGDLEALVQHALRVRNHMNFVPRKYNAEIVEAMAIAGALDPEGTDR--EAALSK 654 Query: 638 LANRLNFIAEKSEKSWHGSINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 A L +E W + + R+ RGV + +EG + S ++ + Sbjct: 655 AAAHLQMG--DTEAKWSAELGEDGHVRFHRVWRGVTDVHEIEGRFLDSAEARKLHRVAQE 712 Query: 697 IEENYLTILSLICN---------------GDKIKITG------PCSLLDTIFSIGRKGIS 735 E Y + + LI ++++G P L+D + + GRKG+ Sbjct: 713 NAEVYASPVRLIRGSEEEAEAEVESDDVEEAAMQVSGDDALILPSQLVDAVMAAGRKGLK 772 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 + R+KGLGEM+A QLWETTL+P+ R+LL+VK+ DA D++F+RLMGD VEPRREFIQ N Sbjct: 773 VSRFKGLGEMDAEQLWETTLDPENRALLQVKVEDADVTDEIFTRLMGDVVEPRREFIQAN 832 Query: 796 SLPS-ALDI 803 +L LD+ Sbjct: 833 ALNVANLDV 841 >gi|32490765|ref|NP_871019.1| hypothetical protein WGLp016 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165971|dbj|BAC24162.1| gyrB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 803 Score = 854 bits (2207), Expect = 0.0, Method: Composition-based stats. Identities = 393/804 (48%), Positives = 540/804 (67%), Gaps = 13/804 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y + SI+ILKGL+AVKKRP MYIGDTD +GLHHMI+EV+DN+IDE+L G+ I VT+ Sbjct: 4 NYTSSSIKILKGLEAVKKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEALAGFCKKIIVTI 63 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S +V D+GRGIP D+H+EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVG+SVV Sbjct: 64 HEDKSISVEDDGRGIPVDIHEEEGISAAEVIMTVLHAGGKFDNDSYKVSGGLHGVGISVV 123 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDF 187 NALS L+L I R G Y ++ G PL G + TGT++ F P+ IF +F Sbjct: 124 NALSEKLELTIYRNGKEYNQNYNFGSPCFPLKKIGKS-RKTGTKIRFWPNLSIFKKNIEF 182 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 Y+ L RL ELSFLNS++ I LID ++ + Y+GGI+ FV YL ++K P+ + Sbjct: 183 QYEILFKRLMELSFLNSNISIYLIDIKNNKN--KHFHYEGGIKEFVKYLHKNKNPIHSNM 240 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 +D I +++A++WNDG+ EN+ CFTNNI QKDGG+HL G RSA+TR I SY++K Sbjct: 241 FYFIKEKDKILVEIALQWNDGFKENINCFTNNISQKDGGSHLIGFRSAITRTINSYMDKE 300 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +KK K GDD REG +++S+K+PDP+FSSQTK+KLVSSEV++ VES +N+ + Sbjct: 301 GYNKKSKVITTGDDTREGLVAIISVKVPDPKFSSQTKDKLVSSEVKTAVESLLNEQFFIF 360 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L E+P ++K IV K+LDA+ VR+AA+R R++TR+KG LD+ +PGKLA C E +P EL Sbjct: 361 LLENPKDSKFIVNKILDAARVREAAKRIREMTRKKGALDVIGIPGKLASCQENNPSLCEL 420 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 +LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+ Sbjct: 421 YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR 480 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D ++ +KLRYH IIIMTDAD+DG+HIRTLLLTFF+RQMP +I G+L+I +PPLY I G Sbjct: 481 DEYNPDKLRYHCIIIMTDADIDGSHIRTLLLTFFYRQMPEVIDRGYLFIAQPPLYKIKIG 540 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K+ +Y+K++ ++E++ I +S+ +IS L+N I D L I K+I + Sbjct: 541 KNKKYIKNDNAMENFQIKRSVENASLKLNSKSSIISGKSLKNIIYDFLNIKKIISE-TEF 599 Query: 608 HDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAEKSEKSWHGSINN-----S 660 K + ++ E ++E L ++ + K I+ Sbjct: 600 SPKELLMYSLNQSELKKEHFLNKEKLKIWLLNLEKNIDELNSNKFKYSFEIIDKDCSGFY 659 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 L+K+ G+++++ + + I K N+I+ + ++ I Sbjct: 660 KFLLKKELYGIKKKYCINKNFINLIEYKTIVCLINKIDYISKKHAYVKKGNNRHNIKNIE 719 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + R+G+++QRYKGLGEMN QLWETT+NP +RS+++V I DA AD LFS L Sbjct: 720 EACNWLLKESRQGMTIQRYKGLGEMNPEQLWETTMNPVSRSMMQVTIKDAIVADQLFSTL 779 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPR+ FI++N+L +DI Sbjct: 780 MGDSVEPRKSFIKKNALNVSNIDI 803 >gi|67459339|ref|YP_246963.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2] gi|75536235|sp|Q4UKX5|GYRB_RICFE RecName: Full=DNA gyrase subunit B gi|67004872|gb|AAY61798.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2] Length = 808 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 430/809 (53%), Positives = 570/809 (70%), Gaps = 7/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHQEEGISAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL V N GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVNEDINKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEAKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAVHPCIVVNTENTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKSKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP E+K I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGTG+ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 541 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-TLDGKEQLVGDNLEELINKVVK 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + + S K + LN + E +K+ W Sbjct: 600 FNGLLDHASKKFNRSITEILAINDLLNNKIFELESDSRLQKALDVLNSLEESPDKTNWEV 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + + R +RG++E +L + SF + I + + L LI + Sbjct: 660 LKHENKVEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFDKQLKLIVKSQEFG 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I LL+ I G++GIS+QR+KGLGEMN++QLWETTL+P R+LL+V++ + +A+ Sbjct: 720 ILTASQLLNAIIECGKRGISIQRFKGLGEMNSNQLWETTLDPAKRTLLQVRVAEVDEAEG 779 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808 >gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] Length = 835 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 384/828 (46%), Positives = 531/828 (64%), Gaps = 30/828 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + +++Y A SIQIL+GL+AV+KRP MYIGDT +GLHH ++EVLDN+IDESL G+ Sbjct: 12 SPSTLSAAYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHCVFEVLDNSIDESLAGHC 71 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 I VT++ D S +++DNGRGIPT + E SAAE++MT LHAGGKF+Q SYKVS Sbjct: 72 TEIHVTIHSDNSISITDNGRGIPTGIKWDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVS 131 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSA 165 GGLHGVGVS VN LS LKL I+R+G + M F+ G+ +P+ V G Sbjct: 132 GGLHGVGVSCVNGLSRLLKLTIRRDGKTHYMEFVRGVPQNREIETIDGHIVSPIKVIGET 191 Query: 166 GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 + GTEV F +IF+ +F+YD L R+RELSFLN+ V+I L D+R+ + + Sbjct: 192 -DKRGTEVHFWADEEIFNNVEFHYDILAKRIRELSFLNNGVRIRLSDQRTGKE--ELFAF 248 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNNI 280 +GG FV Y+++ K L + + G R NI++D++M+WND Y+E V+CFTNNI Sbjct: 249 EGGTRGFVEYINKAKSVLHPTIFQATGERLSDQGTNIAVDVSMQWNDAYNEQVICFTNNI 308 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 PQ+DGGTHL+GLR+A+TR I Y+++ +KK K V GDD REG T VLS+K+P+P+FS Sbjct: 309 PQRDGGTHLTGLRAAMTRVINKYIDEHEFAKKAKVEVTGDDMREGLTCVLSVKVPEPKFS 368 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 SQTK+KLVSSEVR VE V L+ +L+E P +AKII K+++A+ R+AAR+ARDLTR Sbjct: 369 SQTKDKLVSSEVRGPVEEIVAKTLADYLQEKPNDAKIICGKIVEAARAREAARKARDLTR 428 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKGV+D L KLADC E+DP EL++VEGDSAGGSAKQGR R+ QAILPLRGK+LNV Sbjct: 429 RKGVMDGLGLSSKLADCQEKDPALCELYVVEGDSAGGSAKQGRDRKFQAILPLRGKVLNV 488 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+ARF+KML+S++I TLI LGT IG D F+I KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 489 EKARFEKMLASEQITTLIATLGTSIGADEFNIEKLRYHRIIIMTDADVDGAHIRTLLLTL 548 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 +RQMP L+ G +YI +PPLY + GK +Y+KD+ Y++ +L++ + + Sbjct: 549 LYRQMPQLVERGHVYIAQPPLYKVKHGKDERYLKDDVEEAVYMMQIALNDAALVPAEGAE 608 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 IS + L + + +I D + A+++GV S QE + A +L + Sbjct: 609 PISGDALAELVRQYNTSNAIINRLTRMVDGAALT-AIMTGVTLDLSSQEAANASAQRLQD 667 Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 + + + + + R+ G + ++ + + + + Sbjct: 668 GIGEPSVEVIVRHDELAEKFSLRIHRMYHGNIKVSAIDAEFVNGADYRVLAAAAATFKGL 727 Query: 701 YLTILSLICN-GDKIK---ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 T + G+K+K I ++ + S + + QRYKGLGEMN SQLWETT++ Sbjct: 728 IGTGAMVQRGVGEKVKSIGINDFHQAMNWLRSEAERNVGKQRYKGLGEMNPSQLWETTMD 787 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 P R LL+V+I DA AD +F+ LMGD+VEPRR FI+ N+L + +DI Sbjct: 788 PTVRRLLKVQIEDAIAADQIFTTLMGDDVEPRRAFIELNALSAGNIDI 835 >gi|91205810|ref|YP_538165.1| DNA gyrase subunit B [Rickettsia bellii RML369-C] gi|157827062|ref|YP_001496126.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389] gi|123266189|sp|Q1RHT8|GYRB_RICBR RecName: Full=DNA gyrase subunit B gi|91069354|gb|ABE05076.1| DNA gyrase subunit B [Rickettsia bellii RML369-C] gi|157802366|gb|ABV79089.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389] Length = 808 Score = 853 bits (2203), Expect = 0.0, Method: Composition-based stats. Identities = 427/809 (52%), Positives = 571/809 (70%), Gaps = 7/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDE+L Sbjct: 1 MSEFEEKLNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ V LN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYCDLVRVVLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R + + F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ ++HRLREL+FLNS V+I L D R E +E+ +Y GGIEA+V YLD Sbjct: 181 SVETFTNIEFDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLD 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +S L Sbjct: 241 RAKHAVHSCIVVNADNTESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSGL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR IT+Y+E + +KK K + G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRVITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP +AK+I+ K+++A+ R+AAR+AR+LTRRK VL++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGTG+ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G S Y+K+E++L+DYL+ ++S+ D+K ++ +L + +K Sbjct: 541 AQPPLYKVKKGASELYLKNEQALQDYLVKSAISDATL-TLDNKEQLTNENLEELMSKVIK 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + S K N LN + + +K+ W Sbjct: 600 FNSLLDHASKKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSLEQSPDKTDWEV 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R +RG++E+ +L + SF + I + + L L+ + Sbjct: 660 LKHENKIEFFRFSRGLKERKILLREQLESFEFINISKLALTIFDVFNKQLKLVVKNQEFD 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G+KGIS+QR+KGLGEMN+ QLW+TTL+P R+L++V++ + +A+ Sbjct: 720 ILTPSILLNTIIECGKKGISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDEAEG 779 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR+FIQ N+L LD+ Sbjct: 780 IFSTLMGDVVEPRRQFIQSNALNVVNLDV 808 >gi|149925374|ref|ZP_01913638.1| DNA gyrase, B subunit [Limnobacter sp. MED105] gi|149825491|gb|EDM84699.1| DNA gyrase, B subunit [Limnobacter sp. MED105] Length = 841 Score = 852 bits (2202), Expect = 0.0, Method: Composition-based stats. Identities = 382/831 (45%), Positives = 531/831 (63%), Gaps = 38/831 (4%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 N+ Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 16 NNADYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 75 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V+DNGRGIPT D H E SA+E+ +T LHAGGKFNQ SYKVSGGL Sbjct: 76 VTIHADNSISVTDNGRGIPTGVKMDDKH-EPKRSASEIALTELHAGGKFNQNSYKVSGGL 134 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168 HGVGVS VNALSSWL+L ++REG ++++ F G + +P+ + G + Sbjct: 135 HGVGVSCVNALSSWLRLIVRREGKVHQLEFARGFVQNRIIEQVDGVDVSPMKIVG-TTDK 193 Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV FLP + IF + F+Y+ L RLRELSFLN+ V+I L D+R+ + G Sbjct: 194 RGTEVHFLPDTQIFQQNNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFAGSG 251 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277 G+ FV +++ +KK L + G R +I ++++M+WNDG++E+VLCFT Sbjct: 252 GVMGFVEFINANKKILHPNTFYAAGERPAETYGGIPGTSIGVEVSMQWNDGFNESVLCFT 311 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 NNIPQ+DGGTHL+GLR+A+TR I Y+E + +KK K V GDD REG VLS+K+P+P Sbjct: 312 NNIPQRDGGTHLTGLRAAMTRVIGKYIEVNEIAKKQKVEVTGDDMREGLCCVLSVKVPEP 371 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 +FSSQTK+KLVSSEVR+ VE V L +LEE P +AK+I K+++A+ R+AAR+ARD Sbjct: 372 KFSSQTKDKLVSSEVRAPVEDIVAKVLGEFLEERPNDAKLICLKIVEAARAREAARKARD 431 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 +TRRKGVLD LPGKLADC ERDP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+ Sbjct: 432 MTRRKGVLDGVGLPGKLADCQERDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKV 491 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 LNVE+ARFDK+L+S++I TLITALGT IG+D F++ KLRYH+IIIMTDADVDGAHIRTLL Sbjct: 492 LNVEKARFDKLLTSEQITTLITALGTSIGKDDFNLAKLRYHRIIIMTDADVDGAHIRTLL 551 Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 LT +RQMP L+ +G +YI +PPLY + GK +Y+KD++ Y++ +L + + + Sbjct: 552 LTLLYRQMPELVEHGHVYIAQPPLYKVKHGKDERYLKDDQEEAQYMLGIALEKAGLIPGE 611 Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 K I L + ++ +++ D + V + + +E + + A++ Sbjct: 612 GKEPIKGEALEELARQFVTVEAVVRRLSRMIDPDVLNAIVEGVELDLD-SEEASKASAAR 670 Query: 638 LANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 L L+ + + +L+ R G ++ + + Sbjct: 671 LQAVLDPTIMTVFSQFDEQSDKHRVLIHRRHHGNVRVTTIDPDFVHGADYPLLAHAAKTF 730 Query: 698 EENYLTILSLICNGDK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 + + + + + + + K I+ QRYKGLGEMN QLWET Sbjct: 731 KGLIMEGAEIQRGEGEKQKVQAVQSFREAMHWLREQAEKAITKQRYKGLGEMNPQQLWET 790 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 T++P R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + +D+ Sbjct: 791 TMDPTVRRLLRVQIEDAIAADQIFTTLMGDEVEPRRAFIESNALKAGNIDV 841 >gi|222053121|ref|YP_002535483.1| DNA gyrase, B subunit [Geobacter sp. FRC-32] gi|221562410|gb|ACM18382.1| DNA gyrase, B subunit [Geobacter sp. FRC-32] Length = 794 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 387/806 (48%), Positives = 529/806 (65%), Gaps = 15/806 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS++ + Y AD I++L+GL AV+KRP+MYIG T GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSNDETSKDYGADKIKVLEGLSAVRKRPAMYIGSTS-IQGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N+DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYKVSGGL Sbjct: 60 CDDIAVTINVDGSVTVVDNGRGIPTDMHPTEGKSAAEVVLTVLHAGGKFDNTSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G I++ S+ G PL V G GT++ F P + Sbjct: 120 HGVGVSVVNALSKKLELEIRRDGKIFKQSYRCGDPQGPLEVVGETK-KRGTKIIFFPDDE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++D L RLREL+FLN+ V+I ++D+R+ + E FY+GGI +FV YL+++K Sbjct: 179 IFETTEFSFDILSQRLRELAFLNAGVKIKIVDERTEKVHE--FFYEGGIRSFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ PI I G + + +++AM++ND Y E V F NNI +GGTHL G ++ALTR + Sbjct: 237 TPIHPQPIFINGEKGGVEMEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKAALTRTM 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K K ++ G+D REG T+V+S+K+ P+F QTK KL +SEV+ VE+ + Sbjct: 297 NTYANTNNLLKNVKENISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ +LEE+P AK I++K +DA+ R+AARRARDLTRRKG L++ +LPGKLADC E+ Sbjct: 357 NEKLATYLEENPQIAKRILEKSIDAARAREAARRARDLTRRKGALEVGTLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSSQEI TLI A Sbjct: 417 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLSSQEIRTLIAA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT +G+ FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM LI G+LYI +PP Sbjct: 477 LGTSVGKGDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I RGK QY+K+E +L+ YL+ + + I F + + + ++ L Sbjct: 537 LYKIKRGKKEQYLKNEAALQSYLLEEGTEDLILRFGSDERTYRGKQIIPLLRQIIEHQSL 596 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + +S + + S+L L + E + + + Sbjct: 597 FGKVVKKGVNEELLKIFL------KSGVKSGLEEISELEPYLARMKENFPDADYMPGDQK 650 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITG 718 I + R +Q + + I S+ ++E + + +K + Sbjct: 651 IIFMLGNLRVSIDQHIFDA--INSYEYDLLVESQRKVETIMGNESATVATEEKQLLETES 708 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LL +KG+ +QRYKGLGEMN QLWETT++P+ R LL+VKI D +A+++F+ Sbjct: 709 HEELLAFFLETAKKGLYIQRYKGLGEMNPEQLWETTMHPENRLLLQVKIEDTVEAEEIFT 768 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRREFI+ N+L LDI Sbjct: 769 VLMGDQVEPRREFIELNALNVSNLDI 794 >gi|171462835|ref|YP_001796948.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192373|gb|ACB43334.1| DNA gyrase, B subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 832 Score = 851 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 395/836 (47%), Positives = 531/836 (63%), Gaps = 37/836 (4%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ + Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE L G Sbjct: 1 MTEEKKVVEQYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEVLAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYK 115 Y ITV + D S ++ DNGRG+PT + E SAAE+ MT LHAGGKF+Q SYK Sbjct: 61 YCSEITVVIQTDNSISIVDNGRGVPTGIKYDDKHEPKRSAAEIAMTELHAGGKFDQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTG 163 VSGGLHGVGVS VNALS WL+L I+R+G Y M F G++ +P+ VTG Sbjct: 121 VSGGLHGVGVSCVNALSKWLRLTIRRDGKAYYMEFARGVIQNRNVVDEGGVLISPITVTG 180 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 +GTEV FL +IF +F+Y+ L R+RELSFLN+ V I LID+R+ + Sbjct: 181 DTE-LSGTEVHFLADEEIFGNVEFHYEILVKRIRELSFLNNGVHIKLIDQRTSQK--EDF 237 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTN 278 + GG++ FV Y+++ K L + +G R I+ +++M+WNDG+ E VLCFTN Sbjct: 238 AFSGGVKGFVEYINQTKNILHPNIFYAEGVRPSDLGGQITAEVSMQWNDGFSEQVLCFTN 297 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y++++ +KK K + GDD REG VLS+K+P+P+ Sbjct: 298 NIPQRDGGTHLTGLRAAITRVINKYIDENEIAKKAKVEISGDDMREGLACVLSVKVPEPK 357 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR VE V + LSA+L+E P +AKI+ K++DA+ R+AAR+ARD+ Sbjct: 358 FSSQTKDKLVSSEVRGPVEEIVAEALSAYLQERPADAKILCGKIVDAARAREAARKARDM 417 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TR KG LD LPGKLADC E+DP KSELF+VEGDSAGGSAKQGR R QAILPL+GKIL Sbjct: 418 TRCKGALDGLGLPGKLADCQEKDPSKSELFIVEGDSAGGSAKQGRDRRFQAILPLKGKIL 477 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+ARFDKM +SQE+ TLIT LGTGIG + + +KLRYH+IIIMTDADVDG+HIRTLLL Sbjct: 478 NVEKARFDKMFASQEVVTLITVLGTGIGIEEYKADKLRYHRIIIMTDADVDGSHIRTLLL 537 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TFF+RQMP LI G ++I +PPLY + GKS QY+KD+ L L+ +L S Sbjct: 538 TFFYRQMPELIERGHIFIAQPPLYKVKFGKSEQYIKDDNELNQLLLRIALETASLQTP-S 596 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LA 635 +I + L + I ++ F D+ + N ++++ N S L Sbjct: 597 GEIIEGDALNELVKHYQVIQSIVDRFSRTIDEDALRAIASGTSLNLDTEKSANDSADRLR 656 Query: 636 SKLANRLNFIAEKSEKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 LA+ LN +A E +L+ R G + + + + Sbjct: 657 QALADSLNPLAAAPEIIVQKEDRTERYRLLLSRRIHGNLKLSSINSDFVHGDDYQSLANA 716 Query: 694 SNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + + + + I + + S + +S QRYKGLGEMN S Sbjct: 717 AAVLSGKVVAGSKVRRGDPDKNQKEQTIGDFRAAFAWLLSEAERVLSRQRYKGLGEMNPS 776 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++ ++R+LL+VKI DA AD +F+ LMGDEVEPRR FI++N+L + LD+ Sbjct: 777 QLWETTMDANSRTLLQVKIEDAIAADQVFTTLMGDEVEPRRAFIEKNALIARNLDV 832 >gi|330994267|ref|ZP_08318195.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1] gi|329758734|gb|EGG75250.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1] Length = 848 Score = 851 bits (2200), Expect = 0.0, Method: Composition-based stats. Identities = 422/804 (52%), Positives = 559/804 (69%), Gaps = 12/804 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YDA SI +L+GLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ G+A VT Sbjct: 49 ADYDAASISVLRGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATTCIVT 108 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +V Sbjct: 109 LNGDGSVTVRDDGRGIPTDMHHEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAV 168 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W+++RI REG + + F +G D L V G + GT+VTF PS+ F+ +F Sbjct: 169 VNALSEWMEVRIWREGREHVIRFRHGERDEALRVVGESAEPRGTQVTFKPSAQTFAKVEF 228 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + L+ RLREL+FLNS ++I L D+R RE Y+GG+ AFV +LD+ K +++ P Sbjct: 229 EFPILERRLRELAFLNSGLKIVLRDERHEPAREENFHYEGGLCAFVEWLDQGKTAIVEPP 288 Query: 248 I--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +Q + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR + Y E Sbjct: 289 ITGSLQNDENGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGRYAE 348 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K ++ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV + D +S Sbjct: 349 ANATKKDS-HALNGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMIS 407 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 W E HP EA+ IV KV+DA+ R+AARRAR+LTRRKGVLDI+SLPGKLADC ERDP K Sbjct: 408 HWFETHPKEARHIVAKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPSKC 467 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S EIGTLITALGTGI Sbjct: 468 ELFLVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGI 527 Query: 486 GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G+ F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP LI G+LYI +PP Sbjct: 528 GRGDVEHGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIEKGYLYIAQPP 587 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY RG +Y+KD+ +LE YL++++L+ + D + ++ +R + + + Sbjct: 588 LYRAKRGNDERYLKDDAALESYLLDKALANAALRYADGRE-LTGEAMRAEVLFIRDVTRA 646 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + +EQA I+GV + + L RL+ ++ +E+ W +++NS Sbjct: 647 LSRLSARVPVWVLEQAAIAGVLRPDL--QAMPERIVDLQARLDAVSPPAERGWKVAVSNS 704 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + + R RGV E + LE +++ S ++ R+ ++ ++L+ +G GP Sbjct: 705 GLEMARSVRGVGEVYRLEATALRSAEVRWLAERHARLVADFTQPITLLLDGAPQSFNGPA 764 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 SL + I + GRKG+S+ R+KGLGEMN QLWETTL+P R+LL+VK+ D A +FS L Sbjct: 765 SLYERILAQGRKGLSINRFKGLGEMNDEQLWETTLDPAMRTLLQVKVGDIENAAQVFSTL 824 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPRR+FI N+L LD+ Sbjct: 825 MGDVVEPRRDFIVGNALKVANLDV 848 >gi|325294445|ref|YP_004280959.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064893|gb|ADY72900.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 804 Score = 850 bits (2196), Expect = 0.0, Method: Composition-based stats. Identities = 384/811 (47%), Positives = 536/811 (66%), Gaps = 15/811 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N + YDA +I++L+GL+AV+KRP MYIGDT G GLHH+++E++DN++DE+L GY Sbjct: 1 MANNEK---YDASAIKVLEGLEAVRKRPGMYIGDT-GSYGLHHLVFEIIDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIP D+H E G AAE++MT LHAGGKF +K+YK SGGL Sbjct: 57 CTEIKVIIHEDNSITVEDNGRGIPVDIHPEYGKPAAEIVMTVLHAGGKFEKKAYKYSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WLKL I ++G +Y+ + G G GT VTF P + Sbjct: 117 HGVGVSVVNALSEWLKLEIHKDGKVYKQIYEKGNPVTEFACIGETK-KRGTIVTFKPDPE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF V +F++D L +RLREL+FLN ++I+LID+R+ +E T +Y+GGI FV ++ K Sbjct: 176 IFEVTEFSWDILANRLRELAFLNKGLKITLIDERTEPQKEETFYYEGGIVEFVKKINEKK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL +PI I G +D+I +++A+++N Y E V F NNI ++GGTH+SG R+ALTR I Sbjct: 236 DPLFPNPIYIAGEKDDILVEVALQYNSTYTEQVFSFVNNINTREGGTHVSGFRTALTRAI 295 Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 ++E++ K+ K SV GDD REG +V+S+K+P+P+F QTK KL +SEVR +V S Sbjct: 296 IKFIEENNLLPKNAKISVTGDDVREGLVTVISVKVPNPQFEGQTKAKLGNSEVRPIVASI 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D L A+L E P + I +KV+ A+ R+AA+RAR+LTRRK L+ SLPGKLADCSE Sbjct: 356 VYDKLYAFLTERPDIGRKIAEKVITAARAREAAKRARELTRRKSALEEFSLPGKLADCSE 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+K+ELFLVEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR +K+LS+ EI T+IT Sbjct: 416 RDPQKTELFLVEGDSAGGSAKQGRDRRFQAILPLKGKIINVEKARIEKVLSNDEIKTIIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG++ FD++KLRY KIIIMTDADVDGAHIRTLLLTFFFRQ P ++ G LYI +P Sbjct: 476 ALGTGIGKN-FDMSKLRYSKIIIMTDADVDGAHIRTLLLTFFFRQFPEIVERGHLYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK Y+K + LE +++ +L + L + K + + L ++D K++ Sbjct: 535 PLYRVKKGKREMYIKSDSELESVVLDFALDSVLLLDNNGKEIPKEEGL-KVVEDISKLES 593 Query: 600 LIKDFYPNHDKTFIEQAVISGV-FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 ++ D+ I + G + D+E L ++ L K+E Sbjct: 594 VVSILSRKRDRDIINILLRIGADYKDLYDREKAEKLVEEIKKNLPESLRKTEFELIEDKE 653 Query: 659 N--SDILVKR-IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI--CNGDK 713 + I + R +++ + + S K+ R +RI E + G+ Sbjct: 654 HCCFKIFCRIPFDRYLKKTVEINKDLLISDLYKHGRGLKSRIREKLGEPPYKVETKKGEV 713 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L + + +G++GI +QRYKGLGEMN QLWETT+NP+ R+LL+V + DA +A Sbjct: 714 KEFLTLEELYNYLLQVGKEGIYIQRYKGLGEMNPDQLWETTMNPENRTLLKVSVEDAVKA 773 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD+VEPR+EFIQ+ + LDI Sbjct: 774 DEIFTILMGDKVEPRKEFIQKFAKEVRNLDI 804 >gi|237749316|ref|ZP_04579796.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13] gi|229380678|gb|EEO30769.1| DNA gyrase subunit B [Oxalobacter formigenes OXCC13] Length = 830 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 384/835 (45%), Positives = 519/835 (62%), Gaps = 37/835 (4%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS N QN +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+ID Sbjct: 1 MSQNSQNDVQQNEENYGVSSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSID 60 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG----ISAAEVIMTRLHAGGKFN 110 E+L G+ I VTL+ D S +V DNGRG+PT + ++ SAAE++MT LHAGGKF+ Sbjct: 61 EALAGFCTEIHVTLHADNSVSVVDNGRGVPTGIKFDDKNTPRRSAAEIVMTELHAGGKFD 120 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NP 158 Q SYKVSGGLHGVGVS VN LS+ LKL I R+G + M F G+ +P Sbjct: 121 QNSYKVSGGLHGVGVSCVNGLSTLLKLTIWRDGKEHYMEFAQGLPQNNSVEMINGVECSP 180 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 + + G + GT V F P IF+ +F Y+ L R+RELSFLN+ V+I L D+R+ + Sbjct: 181 IKIVGVSDKQ-GTRVQFWPDPTIFTTIEFQYEVLARRIRELSFLNNGVRIRLTDQRTGKE 239 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENV 273 Y+GG FV Y++R K L + + G R I +D++M+WND Y+E V Sbjct: 240 --EIFAYEGGTRGFVEYINRGKSVLHPTIFQATGERMSELGTPIYVDISMQWNDSYNEQV 297 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 LCFTNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG T VLS+K Sbjct: 298 LCFTNNIPQRDGGTHLTGLRAAMTRVINRYIEENELAKKAKVDVTGDDMREGLTCVLSVK 357 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 +P+P+FSSQTK+KLVSSEVR VE + L+ +L+E P +AKII K+++A+ R+AAR Sbjct: 358 VPEPKFSSQTKDKLVSSEVRGPVEEIITKTLTDFLQEKPNDAKIICSKIVEAARAREAAR 417 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR+LTRRKGVLD L KLADC E+DP EL+LVEGDSAGGSAKQGR R+ QAILPL Sbjct: 418 KARELTRRKGVLDGLGLSAKLADCQEKDPSMCELYLVEGDSAGGSAKQGRDRKFQAILPL 477 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 RGK+LNVE++R++KMLSS++I TLI LGT IG D F+I+KLRYH+IIIMTDADVDGAHI Sbjct: 478 RGKVLNVEKSRYEKMLSSEQITTLIATLGTSIGPDEFNIDKLRYHRIIIMTDADVDGAHI 537 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 RTLLLT F+RQMP L+ G++YI +PPLY I GK +Y+KD+ +++++ +L Sbjct: 538 RTLLLTLFYRQMPQLVERGYVYIAQPPLYKIKNGKDERYLKDDLEEANHMMSIALQGASL 597 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633 + I+ L+ D +I+ D + + N S +E S Sbjct: 598 TPREGAEPIAGEQLKEMADQHTIAYNIIQRISRMIDMDVLSAIMNGAKLNLNSMEEAEQS 657 Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 A LA +N + + + V + G L+ ++ + Sbjct: 658 -ARSLAKIIN-DPTVEVNVENNENGDIALSVIKTHYGNAHVTRLDKDFVYGNDYRTLEKT 715 Query: 694 SNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 + + ++ + + + S +GIS QRYKGLGEMN Q Sbjct: 716 ATAFLNLIGPGAMITRGEGDRMRQLAVKNFHQAMQWLRSEAERGISKQRYKGLGEMNPDQ 775 Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LWETT++P R LL+VKI DA AD +F+ LMGD VEPRR FI+ ++L + +D+ Sbjct: 776 LWETTMDPTMRRLLKVKIEDAITADQIFTTLMGDNVEPRRAFIENHALLAGNIDV 830 >gi|332524903|ref|ZP_08401089.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2] gi|332108198|gb|EGJ09422.1| DNA gyrase subunit B [Rubrivivax benzoatilyticus JA2] Length = 829 Score = 850 bits (2195), Expect = 0.0, Method: Composition-based stats. Identities = 388/833 (46%), Positives = 529/833 (63%), Gaps = 38/833 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ + Y A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L GY Sbjct: 4 SNQTPPNDYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYC 63 Query: 62 DIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 D I VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKV Sbjct: 64 DDIVVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPRRSAAEIALTELHAGGKFNQNSYKV 122 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGS 164 SGGLHGVGVS VNALS WL+L ++R+G ++ + F G+ +P+ + G Sbjct: 123 SGGLHGVGVSCVNALSKWLRLTVRRDGKVHRVEFKRGVTQDRVIEVRDGVETSPMKIVGD 182 Query: 165 AGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 + GTEV FLP +IFS DF+YD L RLRELSFLN+ V+I L+D+R+ + Sbjct: 183 T-DKRGTEVHFLPDDEIFSHVDFHYDVLAKRLRELSFLNNGVKIRLVDERNAKE--DNFA 239 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTNN 279 + GG++ FV ++++ KK L + G + I +++AM+WND Y E+VLCFTNN Sbjct: 240 FAGGVKGFVEFINQGKKVLHPNVFHAMGEKASEQGTTIGVEVAMQWNDSYSESVLCFTNN 299 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHL+GLR+A+TR I Y+E + +KK K V GDD REG V+S+K+P+P+F Sbjct: 300 IPQRDGGTHLTGLRAAMTRVINKYIEDNELAKKAKVEVAGDDMREGLACVVSVKVPEPKF 359 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVSSEVR+ VE V L+ WL E+P +AKII K++DA+ R+AAR+AR++T Sbjct: 360 SSQTKDKLVSSEVRAPVEDIVGRLLTDWLLENPNDAKIICGKIVDAARAREAARKAREMT 419 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKGVLD LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ QAILPLRGKILN Sbjct: 420 RRKGVLDGIGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKILN 479 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR++K+LSS I TLITALGTGIG + F+++KLRYH+II+MTDADVDGAHIRTLLLT Sbjct: 480 VEKARYEKLLSSDAIVTLITALGTGIGPEDFNVDKLRYHRIIVMTDADVDGAHIRTLLLT 539 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FF+RQM L+ G++YI +PPLY + +GK QY+KD + L+ +L+ +L L Sbjct: 540 FFYRQMHELVERGYIYIAQPPLYKVKQGKHEQYLKDGQELDAFLLKVALDGATVLPDGLA 599 Query: 580 G----VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 + L + + +++ D + + +S + S A Sbjct: 600 EGGRAALQGEALEQLARKYIVANNVVQRLGNWMDLDALRAIANGLELDVDSAEAAQASAA 659 Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695 + A + E + + + R G + V+ + Sbjct: 660 ALQAALKDAT---VEFHVDPRTDKPLLRIGRRHHGNVKTSVITQEFLHGADYAALAEAGR 716 Query: 696 RIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751 + + + K+ + +D + ++ QRYKGLGEMN QLW Sbjct: 717 TFKGLLGEEAVVRRGEGEKQKEQKVADFRAAMDWLMVQAEGAVARQRYKGLGEMNPEQLW 776 Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRREFI+ N+L + +D+ Sbjct: 777 ETTMDPNVRRLLRVQIEDAIEADRVFTMLMGDEVEPRREFIESNALRAGNIDV 829 >gi|296134507|ref|YP_003641749.1| DNA gyrase, B subunit [Thiomonas intermedia K12] gi|294338443|emb|CAZ86769.1| DNA gyrase subunit B [Thiomonas sp. 3As] gi|295794629|gb|ADG29419.1| DNA gyrase, B subunit [Thiomonas intermedia K12] Length = 827 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 394/832 (47%), Positives = 530/832 (63%), Gaps = 37/832 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N SY +SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D Sbjct: 2 NEPKNDSYSENSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGFCD 61 Query: 63 IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 I VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVS Sbjct: 62 DIVVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING--------------ILDNPLVVTG 163 GGLHGVGVS VNALS WL+L ++R+G ++ + F+ G + P +TG Sbjct: 121 GGLHGVGVSCVNALSQWLRLVVRRDGEVHTLEFVRGALQNRQTQMIDGVEVSVAP--ITG 178 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 + GTEV FLP ++IF+ DF+Y+ L RLRELSFLN V+I L+D+R + Sbjct: 179 KT-DKRGTEVHFLPDAEIFTTVDFHYEVLAKRLRELSFLNHGVKIRLVDERQGKE--ENF 235 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFTN 278 + GG++ FV Y++R K L + Q + IS++++M+WNDGY E V CFTN Sbjct: 236 AFSGGVKGFVEYINRGKSVLHPNIFYAQAEKASEVGSTISVEVSMQWNDGYAETVQCFTN 295 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR + Y++ + +KK K + GDD REG T VLS+K+PDP+ Sbjct: 296 NIPQRDGGTHLTGLRAAMTRVMNKYIDDNELAKKAKVEISGDDMREGLTCVLSVKVPDPK 355 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR VE V LS +L E P +AKII K++DA+ R+AAR+AR++ Sbjct: 356 FSSQTKDKLVSSEVRGPVEDLVAKALSDYLLETPTDAKIICGKIIDAARAREAARKAREM 415 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGV+D LPGKLADC E+DP EL+LVEGDSAGGSAKQGR R+ QAILPLRGKIL Sbjct: 416 TRRKGVMDGLGLPGKLADCQEKDPALCELYLVEGDSAGGSAKQGRDRKFQAILPLRGKIL 475 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+ARF+K+L+S EI TLITA+GT IG+D F+I+KLRYH+IIIMTDADVDGAHIRTLLL Sbjct: 476 NVEKARFEKLLTSNEILTLITAMGTSIGKDDFNIDKLRYHRIIIMTDADVDGAHIRTLLL 535 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TFFFRQMP ++ G +YI +PPLY + GK QY+KD L+ YL+ +L + + D+ Sbjct: 536 TFFFRQMPEIVERGHIYIAQPPLYKVKHGKDEQYLKDASELDAYLLRVALKDAVIHRPDT 595 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES-DQEINVSLASK 637 ++ L + + +I D+ + V V + + Q ++A+ Sbjct: 596 PAPLAGETLEQLARQHVLAEAVIARLGVFMDEQALRAIVDGVVIDLDHAAQASADAMAAY 655 Query: 638 LANRLNF-IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 LA + A + + + R G + VL + + Sbjct: 656 LAKHTDHGEAPQVLAEIDPRTEKPYLRIVRRHHGNLKSTVLHADFVHGADYAVLAQAAQT 715 Query: 697 IEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752 ++ + + +D + + QRYKGLGEMN QLWE Sbjct: 716 FHGLIAAGSTVRRGNGDNAKEAAVASFREAMDWLIRQAENTVGRQRYKGLGEMNPEQLWE 775 Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 TT++P R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + LDI Sbjct: 776 TTMDPAVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAANLDI 827 >gi|323143411|ref|ZP_08078096.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066] gi|322416816|gb|EFY07465.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066] Length = 807 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 383/812 (47%), Positives = 518/812 (63%), Gaps = 14/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++Y A I++L GL+AV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MS---AENNYGASGIKVLHGLEAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ DGS V DNGRGIP D H EE SAAEV+MT LHAGGKF+ SYKVSGGL Sbjct: 58 CTDIEVTICADGSVKVKDNGRGIPVDEHPEEHRSAAEVVMTVLHAGGKFDSNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVGVSVVNALS L L I R+G++++ +++NG + PL G + + TGTEV F PS Sbjct: 118 HGVGVSVVNALSDKLVLTIWRQGHVWQQTYLNGGNPEAPLKQIGDS-DATGTEVRFWPSP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRELSFLNS ++I L D+R + T + GGIE FV YL+R Sbjct: 177 SIFSNTTFDYNVLAKRLRELSFLNSGIKIILTDEREA-GKSHTFHHNGGIEEFVRYLNRG 235 Query: 240 KKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K PL D+I ++++M+W D Y+E+V CFTNN+PQKDGGTHLSG +SA+TR Sbjct: 236 KNPLNNKIFHCTKMCEDHIMVEISMQWTDAYNESVFCFTNNVPQKDGGTHLSGFKSAVTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 S++E SKK K S GDD REG T+V+S+KMPDP+FSSQTK+KLVSSE + V Sbjct: 296 IFNSFLESHGYSKKHKVSTSGDDAREGLTAVISVKMPDPKFSSQTKDKLVSSEAGNAVSG 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L +LEE+P EA I K+++++ VR+A R+ARDL+R+ G LDI SLP KLA C Sbjct: 356 CVSEKLKDFLEENPAEADNICMKIIESARVREAMRKARDLSRKNGKLDINSLPDKLAACR 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP ELF+VEGDSAGGSAK GR + QAILPLRGKILNVE+ARFD+M+ SQ++GTLI Sbjct: 416 EKDPALCELFIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARFDRMIQSQQVGTLI 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG G+G+D +D +K RYH +IIMTDADVDGAHIR LLLTFF+RQMP +I G++YI + Sbjct: 476 TALGCGVGKDEYDPDKFRYHNVIIMTDADVDGAHIRILLLTFFYRQMPEIIERGYVYIAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY +GK + YV+ ++ Y +L + I+ L + +D K+ Sbjct: 536 PPLYRYQKGKQVVYVQSDKEALQYRTTLALDNAAIYVNKAAAPITGLPLESLFNDYNKVM 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRL-----NFIAEKSEK 651 + K + + +F + + + A +L + +SE Sbjct: 596 TSLPKMSLKIHKDILINLMYYPLFTADMFNDEGKVKAWADGFVKQLPSQPTEGVFYRSEV 655 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + + G+ ++ L + S + + ++ + ++ Sbjct: 656 KYDAVESAYYPSIVHHIHGIDYRYNLNRNFFESSDYSLLKSLNAKVLDLIEADGYVVSGS 715 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 +I + + + G G+ +QRYKGLGEM+A QL +TT+NPDTR+LL+V I DA Sbjct: 716 KQIPVKNFHEAYEVLMKEGFSGVKIQRYKGLGEMSAEQLSDTTMNPDTRTLLKVSIEDAI 775 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +AD L + LMG+EVE RR FI EN+ + LDI Sbjct: 776 EADRLLTELMGEEVESRRVFISENADKATLDI 807 >gi|157803574|ref|YP_001492123.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel] gi|157784837|gb|ABV73338.1| DNA gyrase subunit B [Rickettsia canadensis str. McKiel] Length = 808 Score = 849 bits (2194), Expect = 0.0, Method: Composition-based stats. Identities = 428/809 (52%), Positives = 568/809 (70%), Gaps = 7/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEENFNKSSYGADSIKVLKGLEAVRKRPGMYIGDVGNGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ V LN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYCDLVQVILNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS ++I L+D R E +E +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGIKILLVDNRFEEAKEAEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + I + + I+++LAM WND Y+EN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIIVNVDNAESGINLELAMHWNDSYYENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKVKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EA+ I+ K+++A+ R+AAR+AR+ TRRK L+I++LPGKLAD Sbjct: 361 ENIVYTKVLEWFEEHPAEARAIISKIMEAANAREAARKAREFTRRKSALEISNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALGTG+ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGTGVDNQEFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRNMPELINKGYLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + +L I+ +K Sbjct: 541 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDGKEQLVDGNLEELINTVVK 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + + +++ E I+ + N + + + K + LN + E +K+ W Sbjct: 600 FNGCLDHASKKFNRSITEILAINDLLNNKIFEAESDLRCKKALDVLNSLEESPDKTNWEV 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R RG++E +L + SF + I + + L LI + Sbjct: 660 LKHENKIEFFRFNRGLKESKILLKEQLESFEFVQISKLALTIFDIFCKQLKLIVKSQECD 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI + G+KGI++QR+KGLGEMN++QLWETTL+P+ R+LL+V++ + +A+ Sbjct: 720 ILTPSQLLNTIIACGKKGINIQRFKGLGEMNSNQLWETTLDPEKRTLLQVRVAEVDEAEG 779 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808 >gi|317050926|ref|YP_004112042.1| DNA gyrase subunit B [Desulfurispirillum indicum S5] gi|316946010|gb|ADU65486.1| DNA gyrase, B subunit [Desulfurispirillum indicum S5] Length = 799 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 388/804 (48%), Positives = 541/804 (67%), Gaps = 10/804 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y ADSI++L+GL+AV+KRP MYIG T G +GLHH++YEV+DN+IDE+L G+ D + Sbjct: 1 MTQQAYGADSIKVLEGLEAVRKRPGMYIGST-GITGLHHLVYEVVDNSIDEALAGHCDTV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV+DNGRGIPT+ HKE+ SAAEV++T LHAGGKF+ SYKVSGGLHGVG Sbjct: 60 EVVIHTDNSITVTDNGRGIPTEFHKEQNRSAAEVVLTVLHAGGKFDSSSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS L+L IKR+G I+ S+ G PL V G TGT++ FLP S IF Sbjct: 120 ISVVNALSEELELEIKRDGKIHRQSYRRGFPQQPLEVVGET-RSTGTKIRFLPDSQIFET 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+Y+ L +RLRE +FLN+ V I + D+R + Y+GG+ +FV++L+++K+ L Sbjct: 179 TEFSYEILSNRLREQAFLNAGVTIIITDERVEKTNT--FLYEGGLRSFVTFLNKNKQTLH 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ + G +++I +++A+++ND Y E + + NNI DGGTHL G +SALTR I +Y+ Sbjct: 237 PEPVHVAGEKNDIIVEIALQYNDTYAETLFTYANNINTVDGGTHLVGFKSALTRCINTYI 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + +K ++ GDD REG T+V+S+K+PDP+F QTK KL ++E +SVVES + Sbjct: 297 STAKIKGSEKITLSGDDIREGLTAVISVKIPDPQFEGQTKGKLGTTEAKSVVESIFGEKF 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +A+LEE+P AK I+ K ++A+ R+AAR+AR+LTRRKGVL+ SLPGKLADCSE+DP K Sbjct: 357 AAYLEENPDVAKQILNKAINAARAREAARKARELTRRKGVLEGNSLPGKLADCSEKDPAK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEGDSAGGSAKQGR R NQAILPL+GKILNVE+ARFDKML+S+EI LITALGTG Sbjct: 417 SELYIVEGDSAGGSAKQGRDRRNQAILPLKGKILNVEKARFDKMLTSEEIKILITALGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IGQ+ FDINK+RYHKIIIMTDADVDGAHI TLLLTFFFRQM +I G+LYI +PPL+ I Sbjct: 477 IGQNDFDINKIRYHKIIIMTDADVDGAHIMTLLLTFFFRQMREIIERGYLYIAQPPLFKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK YVK E+ L+DYLI+ L +EL + I+ + +I ++ ++L+ + Sbjct: 537 QKGKKEMYVKTEKQLQDYLIDLGLDN-VELKDEEGKTITAEQCKEYIRRIVEAERLLHLY 595 Query: 605 YPNHDKTFIEQAVISGVFNCE---SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 F + + E +++ + + +R E+ ++ ++ D Sbjct: 596 QKKGFDIFFIKELAKNAVAVETELRNEQSARDIVERCVSRYGHRPEQFSVDFNEDTSSYD 655 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITGPC 720 I R + + S + R + ++ L+ +GD+ +++ Sbjct: 656 ITFTREEYSYRTTMTINNKIASSVELRKLRDIYQYLRQSMGRSPFLVKDGDRSVELGSYL 715 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + G+KG+ +QRYKGLGEMNA QLW+TT+ PD RSLL+V I D +AD F+ L Sbjct: 716 KFKNYVVERGKKGVGIQRYKGLGEMNADQLWDTTMCPDNRSLLQVSIDDLVEADGAFTIL 775 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPRREFI +N+L LDI Sbjct: 776 MGDNVEPRREFIYDNALNVRNLDI 799 >gi|169260665|gb|ACA52058.1| DNA gyrase B subunit [Shewanella sp. JG353] Length = 762 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 371/765 (48%), Positives = 508/765 (66%), Gaps = 11/765 (1%) Query: 41 LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 LHHM++EV+DN+IDE+L G+ IT+T+++DGS +V D+GRGIP +H+EEG+SAAEVIM Sbjct: 1 LHHMVFEVVDNSIDEALAGHCTDITITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIM 60 Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160 T LHAGGKF+ SYKVSGGLHGVGVSVVNALS L+L I+R+G ++E + +G+ D P+ Sbjct: 61 TVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIK 120 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 G A TGTE+ F PS FS +F+++ L R+RELSFLNS V I L+D+R + Sbjct: 121 EIGDAT-KTGTEIRFWPSEQTFSDVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN-- 177 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNN 279 Y+GGI AFV YL+R+K P+ + RD+ I++++AM+WNDGY EN+ CFTNN Sbjct: 178 EFFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFCFTNN 237 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHL+G RSALTR + +Y+E +KK K + GDD REG T+V+S+K+PDP+F Sbjct: 238 IPQRDGGTHLAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKF 297 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVSSEV++ VE + + L+ +L E+P +AK+IV K++DA+ R+AAR+AR++T Sbjct: 298 SSQTKDKLVSSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMT 357 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKG LD+ LPGKLADC E+DP SE+++VEGDSAGGSAKQGR+R+NQAILPL+GKILN Sbjct: 358 RRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILN 417 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+ARFDKMLSSQE+ TLITALG GIG+D ++ +K RYH IIIMTDADVDG+HIRTLLLT Sbjct: 418 VEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLT 477 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFFRQMP LI G++YI +PPL+ + +GK QY+KDE +L YL Q+L Sbjct: 478 FFFRQMPELIERGYVYIAQPPLFKVKKGKQEQYLKDEAALTQYLTTQALDGTSIYPSQGA 537 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASK 637 +S L + +++ ++ + + + + + E D+ Sbjct: 538 PGMSGEPLERLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNEMLADEAKMKEWIDA 597 Query: 638 LANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692 + L + E + G+ ++ S + Sbjct: 598 FIHELVELENSGVLYSGEPVLDPERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAK 657 Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752 +E + ++ LD S ++G+ +QRYKGLGEMN QLWE Sbjct: 658 LGAALEGLIEVGGYVQRGDRVKEVGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWE 717 Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 TT++P++R +L+V I DA AD LF+ LMGD+VEPRREFI+ N+L Sbjct: 718 TTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANAL 762 >gi|121891|sp|P22118|GYRB_NEIGO RecName: Full=DNA gyrase subunit B gi|150257|gb|AAA88327.1| DNA gyrase [Neisseria gonorrhoeae] Length = 781 Score = 849 bits (2193), Expect = 0.0, Method: Composition-based stats. Identities = 380/803 (47%), Positives = 515/803 (64%), Gaps = 24/803 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y ADSIQ+L+GL+AV KRP MYIGDT SGLHHM++EVLDNAIDE+L G+ Sbjct: 1 MTEQKHE-EYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V+DNGRG+PT +H +EG SAAEVIMT LHAGGKF+ SYK+SGGL Sbjct: 60 CDKITVTIHADHSVSVADNGRGMPTGIHPKEGRSAAEVIMTVLHAGGKFDNNSYKISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+ L I R+G + + F+ G + PL + G + + GT V FL ++ Sbjct: 120 HGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPLKIVGDS-DKKGTTVRFLAGTE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F ++++D L R+RELSFLN+ V I L D+R + + GG+ FV Y++R K Sbjct: 179 TFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGK--HESFALSGGVAGFVQYMNRKK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR +TR I Sbjct: 237 TPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQVMTRTI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVS E+ VV + Sbjct: 297 NSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSGEIGPVVNEVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P EAKII K++DA+ R AAR+AR++TRRKG++D LPGKLADC E+ Sbjct: 357 NQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKGLMDGLGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEG+SAGGSA QGR R+ QAILPL+GKILNV TLITA Sbjct: 417 DPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILNVA--------------TLITA 462 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI +PP Sbjct: 463 LGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGYIYIAQPP 522 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY GK +Y+KDE + +L+ +L + + I +L + L + Sbjct: 523 LYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGAELADTAKQFLLAKTV 580 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I+ D+ + + + + S + + ++A L+ L+ E+ + Sbjct: 581 IEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LSGLLDEKEAALERIEGHEGHQF 639 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 I + R G +E + S + + ++ L ++ Sbjct: 640 -IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKGLVGEGAKLYKGENEYDADSFE 698 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I D AD++F L Sbjct: 699 TALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDRI-ADEVFVTL 757 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGDEVEPRR FI+ N+L + +D Sbjct: 758 MGDEVEPRRAFIENNALIAQNID 780 >gi|15892807|ref|NP_360521.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7] gi|20138262|sp|Q92H87|GYRB_RICCN RecName: Full=DNA gyrase subunit B gi|15619989|gb|AAL03422.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7] Length = 807 Score = 848 bits (2191), Expect = 0.0, Method: Composition-based stats. Identities = 428/809 (52%), Positives = 570/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y M F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + + K + LN + + +K+ W Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R +RG++E +L + SF F+ I + + L LI + Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKFALTIFDIFSKQLKLIVKSQEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807 >gi|238650642|ref|YP_002916494.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic] gi|238624740|gb|ACR47446.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic] Length = 807 Score = 847 bits (2189), Expect = 0.0, Method: Composition-based stats. Identities = 426/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNAYKVA 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y M F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V++ L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKLLLVDNRFEEVKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIITKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELIKKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKEQLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + K + LN + + +K+ W Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFDPESDLRLKKALDVLNSLEDSPDKTNWEV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R +RG++E +L + SF + I + + L LI + Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIKCGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807 >gi|209542192|ref|YP_002274421.1| DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|209529869|gb|ACI49806.1| DNA gyrase, B subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 818 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 417/805 (51%), Positives = 560/805 (69%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +S YDA SI +LKGLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ G+A V Sbjct: 18 DSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATSCIV 77 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN DGS TV DNGRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG + Sbjct: 78 TLNGDGSVTVRDNGRGIPTDMHAEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAA 137 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+++RI R G + + F +G D PL V G + GT+VTF PS F+ + Sbjct: 138 VVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPRGTQVTFKPSIGTFTRVE 197 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F + L+ R+REL+FLNS +QI L D+R RE ++GG+ AFV +LDR K ++ Sbjct: 198 FEFAILERRMRELAFLNSGLQIVLRDERHTPTREENFHFQGGLAAFVEWLDRGKSSIVDP 257 Query: 247 PI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI +Q + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR + Y Sbjct: 258 PITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGKYA 317 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + K +S++G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV + +D + Sbjct: 318 ESNASKKDS-QSLVGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAASDMI 376 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + W E HP EA+ IV KV+DA+ R+AARRAR+LTRRKGVLD++SLPGKLADC ERDP + Sbjct: 377 AHWFETHPKEARAIVAKVMDAAAAREAARRARELTRRKGVLDVSSLPGKLADCQERDPAR 436 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S E+GTLITALGTG Sbjct: 437 SELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTG 496 Query: 485 IGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 IG+ F I+KLRYH+++IMTDADVDG+HIRTLLLTFFFRQMP LI G LYI +P Sbjct: 497 IGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIAQP 556 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY RG +Y+KD+ +LE YL++++L+ + D V++ DL + + + Sbjct: 557 PLYRAKRGNDERYLKDDAALEQYLLDKALANASLRYGD-GRVVAGADLAADMAFLRDVTR 615 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 ++ +EQA I+G N ++ + + L +L+ ++ +E+ W + Sbjct: 616 ALQRLTLRAPLWILEQAAIAGALNADT--ATVQTRVAALQAQLDEVSLPNERGWKVVASA 673 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + + R RGV E + L+ +++ S ++ + R+ ++ + L + GP Sbjct: 674 DGLEMARSVRGVGEVYRLDPATLRSAEVRWLAERAERLATDFAGKVELTLDTTTRAADGP 733 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 SL + I + GR+G+S+ R+KGLGEMN +QLWETTL+P R+LL+VK+ D A +FS Sbjct: 734 ASLYERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQVFST 793 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI N+L LD+ Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLDV 818 >gi|162147558|ref|YP_001602019.1| DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5] gi|161786135|emb|CAP55717.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl 5] Length = 818 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 417/805 (51%), Positives = 561/805 (69%), Gaps = 12/805 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +S YDA SI +LKGLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ G+A V Sbjct: 18 DSDYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGFATSCIV 77 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN DGS TV DNGRGIPTD+H EEG+SAAEV++T+LHAGGKFNQ SYKVSGGLHGVG + Sbjct: 78 TLNGDGSVTVRDNGRGIPTDMHAEEGVSAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAA 137 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+++RI R G + + F +G D PL V G + GT+VTF PS F+ + Sbjct: 138 VVNALSEWMEVRIWRNGQEHMIRFRHGERDAPLTVVGPSDEPRGTQVTFKPSIGTFTRVE 197 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F + L+ R+REL+FLNS +QI L D+R RE ++GG+ AFV +LDR K ++ Sbjct: 198 FEFAILERRMRELAFLNSGLQIVLRDERHTPTREENFHFQGGLAAFVEWLDRGKSSIVDP 257 Query: 247 PI--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI +Q + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR + Y Sbjct: 258 PITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRVVGKYA 317 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + K +S++G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV + +D + Sbjct: 318 ESNASKKDS-QSLVGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAASDMI 376 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + W E HP EA+ IV KV+DA+ R+AARRAR+LTRRKGVLD++SLPGKLADC ERDP + Sbjct: 377 AHWFETHPKEARAIVAKVMDAAAAREAARRARELTRRKGVLDVSSLPGKLADCQERDPAR 436 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S E+GTLITALGTG Sbjct: 437 SELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEVGTLITALGTG 496 Query: 485 IGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 IG+ F I+KLRYH+++IMTDADVDG+HIRTLLLTFFFRQMP LI G LYI +P Sbjct: 497 IGRGDVDQGGFSIDKLRYHRVVIMTDADVDGSHIRTLLLTFFFRQMPELIERGHLYIAQP 556 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY RG +Y+KD+ +LE YL++++L+ + D V++ DL + + + Sbjct: 557 PLYRAKRGNDERYLKDDAALEQYLLDKALANASLRYGD-GRVVAGADLAADMAFLRDVTR 615 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 ++ +EQA I+G N ++ + + L +L+ ++ +E+ W + Sbjct: 616 ALQRLTLRAPLWILEQAAIAGALNADT--ATVQTRVAALQAQLDEVSLPNERGWKVVASA 673 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + + R RGV E + L+ +++ S ++ ++R+ ++ + L + GP Sbjct: 674 DGLEMARSVRGVGEVYRLDPATLRSAEVRWLVERADRLATDFAGKVELTLDSTTRAADGP 733 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 SL + I + GR+G+S+ R+KGLGEMN +QLWETTL+P R+LL+VK+ D A +FS Sbjct: 734 ASLYERILAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVKVGDVENAAQVFST 793 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI N+L LD+ Sbjct: 794 LMGDVVEPRRDFIVGNALKVANLDV 818 >gi|51473761|ref|YP_067518.1| DNA gyrase subunit B [Rickettsia typhi str. Wilmington] gi|81826298|sp|Q68WF6|GYRB_RICTY RecName: Full=DNA gyrase subunit B gi|51460073|gb|AAU04036.1| DNA gyrase [Rickettsia typhi str. Wilmington] Length = 807 Score = 846 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 426/809 (52%), Positives = 572/809 (70%), Gaps = 8/809 (0%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS + SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DN+IDE+L Sbjct: 1 MSGIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D+I VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q SYK+S Sbjct: 61 AGYCDLIRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQHSYKIS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL + + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S IF+ +F++ T++HRLREL+FLNS V+I LID R E +++ FY GGIEA+V Y+D Sbjct: 181 SVGIFTNIEFDFVTIEHRLRELAFLNSGVKILLIDNRFEEVKKVEFFYTGGIEAYVQYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTEHVESGISLELAIHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP+EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPIEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKMLSS++IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLSSEQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + G S Y+K+E++L++YLI ++++ D + + +L + I+ ++ Sbjct: 540 AQPPLYKVKSGASELYLKNEQALQNYLIKSTINDTKL-ILDGQEQLIGYNLEDLINKVVQ 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ +FN + + + S K + LN + E +K+ Sbjct: 599 FNCLLDRASKKFNRSITEILAINDLFNKKIFEPESGSRLQKALDVLNNLEESPDKTNLQV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I +RG++ +L + F F+ I + + L LI G + Sbjct: 659 LKHENRIEFFHFSRGLKNTKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKGKEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + P LL+TI G+KGI++QR+KGLGEMN+ QLW+TTL+P R+LL+V++++ +A+ Sbjct: 719 VVTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWDTTLDPTKRTLLQVRVSEVDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +FS LMGD VEPRR FIQ N+L LDI Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDI 807 >gi|121596427|ref|YP_988323.1| DNA gyrase subunit B [Acidovorax sp. JS42] gi|120608507|gb|ABM44247.1| DNA gyrase subunit B [Acidovorax sp. JS42] Length = 868 Score = 846 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 390/845 (46%), Positives = 528/845 (62%), Gaps = 52/845 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I V Sbjct: 28 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87 Query: 67 TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 T++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLH Sbjct: 88 TIHTDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 146 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169 GVGVS VNALS L+L ++R+G +++ F G++ +P+ V G Sbjct: 147 GVGVSCVNALSKKLRLTVRRDGQTHQLEFAQGVVQNRLIEVVDGVEVSPMKVIGPTE-KR 205 Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I LID+R+ + GG Sbjct: 206 GTEVRFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGG 263 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278 ++ FV +++ KK L +P GSR I +++AM+WNDGY+E VLCFTN Sbjct: 264 VKGFVEFINGTKKVLHPTPFHATGSRPAETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTN 323 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+ Sbjct: 324 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 383 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++ Sbjct: 384 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCGKIVEAARAREAARKAREM 443 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKIL Sbjct: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDADV 508 NVE+AR++K+LSS EI TLITALGTGIG+ D FD+ KLRYH+IIIMTDADV Sbjct: 504 NVEKARYEKLLSSNEIVTLITALGTGIGKAAVESGKSGADDFDVAKLRYHRIIIMTDADV 563 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+ +L+ +L Sbjct: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDTFLLRVAL 623 Query: 569 SEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + ++ ++L +++I D + VFN ++ Sbjct: 624 NHASITTGGDQPRTLAGDELAQLARTHQHAEQVIARLSAFMDAEALRAVADGVVFNLDTL 683 Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIF 683 Q+ S A G I + + + R G + ++ + Sbjct: 684 QDAEASAVQLQAKLRELNTNGVPADVAGEIDPRTDKPILRISRHHHGNIKSSLITQDFVA 743 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739 + + + K+ + + S + S QRY Sbjct: 744 GDDYAALAQAAESFRGLIQEGAKVTRGEGEKAKEEKVGDFRQAMAWLISEAERTTSRQRY 803 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 804 KGLGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRA 863 Query: 800 -ALDI 803 LD+ Sbjct: 864 GNLDV 868 >gi|302341697|ref|YP_003806226.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075] gi|301638310|gb|ADK83632.1| DNA gyrase, B subunit [Desulfarculus baarsii DSM 2075] Length = 795 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 366/804 (45%), Positives = 510/804 (63%), Gaps = 10/804 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+++ ++Y AD I++L+GL+AV+KRP+MYIG T GLHH++YEV+DN++DE++ G+ Sbjct: 1 MTED--RTNYTADKIKVLEGLEAVRKRPAMYIGSTS-VDGLHHLVYEVVDNSVDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S +V D+GRGIP D H EG+SA +V+MT+LHAGGKF+ K+Y+V+GGL Sbjct: 58 CENIRVVIHADNSVSVVDDGRGIPVDFHAHEGMSAVQVVMTKLHAGGKFDDKAYQVAGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ I R+G +Y ++ G + L V G GT+VTF P + Sbjct: 118 HGVGVSVVNALSQWLEVEISRDGKVYHQRYMRGKPVSELEVIGKT-RRRGTKVTFKPDEE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD L R+REL+FLN ++I L D+RS E + YKGGI FV Y+ R+ Sbjct: 177 IFETTEYSYDILVARMRELAFLNRGLRIDLADERSDEE--KSFHYKGGINEFVEYISRNS 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL PI + G + + +++A+++ D Y E + F NNI K+GGTHL+G ++ALTR I Sbjct: 235 APLHPKPIYLAGQKGMVQVEIALQYADSYKERLFSFANNINTKEGGTHLTGFKAALTRTI 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+ + K K GDD REG V+S+++P P+F QTK KL +SEV+ +VE V Sbjct: 295 NAYIANN--FPKIKTPPSGDDAREGLFGVISVRIPQPQFEGQTKMKLGNSEVKGLVEQIV 352 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND L+ + EE+P A+ +V KV +A+ R+AAR+AR+L RRKGVL SLPGKLADCS R Sbjct: 353 NDQLATYFEENPAVARRVVDKVTEAARAREAARKARELVRRKGVLGEHSLPGKLADCSNR 412 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D ELFLVEGDSAGGSAKQ R R QAILPL+GKILNVE+ARF KM+ + EIGT+ITA Sbjct: 413 DATVCELFLVEGDSAGGSAKQARDRNFQAILPLKGKILNVEKARFHKMIENAEIGTIITA 472 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ F++ KLRYHKI+IMTDADVDG+HIRTL+LTFFFRQMP LI G LYI +PP Sbjct: 473 LGAGIGEEDFNLAKLRYHKIVIMTDADVDGSHIRTLILTFFFRQMPELIEAGHLYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I GK Y+KDE+SL L+ ++ +E + +S L + ++ + Sbjct: 533 LYRIVDGKKENYIKDEQSLRSMLLERACAEATLEVPATGQSVSGLRLISHMNTVGAYLEA 592 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + T QAV+ + + + + + + Sbjct: 593 LDRLRRRGYHTPALQAVLRVGARSRNIFSDQNRVKELSDSLAQHDLIIGDIPFDEEHSLY 652 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 +I V + + + S ++ L NG+ +I Sbjct: 653 EIQVS-CLGDAAKCAPISWELVSSADYARLHALHQQLGGGDAGPFILRKNGEVSQIATIE 711 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LL + G KG+ +QRYKGLGEMN QLW+TT++P+ R+LL+VK+ DA AD +F+ L Sbjct: 712 GLLSRLLEDGAKGLGLQRYKGLGEMNPEQLWQTTMDPERRTLLQVKVDDAIAADTMFATL 771 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPR+EFI EN+L + ALDI Sbjct: 772 MGDQVEPRKEFIIENALEARALDI 795 >gi|222109228|ref|YP_002551492.1| DNA gyrase subunit B [Acidovorax ebreus TPSY] gi|221728672|gb|ACM31492.1| DNA gyrase, B subunit [Acidovorax ebreus TPSY] Length = 868 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 389/845 (46%), Positives = 528/845 (62%), Gaps = 52/845 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I V Sbjct: 28 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87 Query: 67 TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 T++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLH Sbjct: 88 TIHTDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 146 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169 GVGVS VNALS L+L ++R+G +++ F G++ +P+ V G + Sbjct: 147 GVGVSCVNALSKKLRLTVRRDGQTHQLEFSKGVVQNRLIEIVDGFEVSPMKVIGPSE-KR 205 Query: 170 GTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP ++IF DF+Y+ L RLRELSFLN+ V+I LID+R+ + GG Sbjct: 206 GTEVRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGG 263 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278 ++ FV +++ KK L + G+R I +++AM+WNDGY+E VLCFTN Sbjct: 264 VKGFVEFINGTKKVLHPTAFHATGARPAETYGGIPGTEIGVEVAMQWNDGYNEQVLCFTN 323 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+ Sbjct: 324 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 383 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++ Sbjct: 384 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCGKIVEAARAREAARKAREM 443 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKIL Sbjct: 444 TRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 503 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDADV 508 NVE+AR++K+LSS EI TLITALGTGIG+ D FD+ KLRYH+IIIMTDADV Sbjct: 504 NVEKARYEKLLSSNEIVTLITALGTGIGKAAVESGKSGADDFDVAKLRYHRIIIMTDADV 563 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+ +L+ +L Sbjct: 564 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDTFLLRVAL 623 Query: 569 SEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + ++ +DL +++I D + VFN ++ Sbjct: 624 NHASITTSGDQPRTLAGDDLAQLARTHQHAEQVIARLSAFMDAEALRAVADGVVFNLDTL 683 Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIF 683 Q+ S A G I + + + R G + ++ + Sbjct: 684 QDAEASAVQLQAKLRELNTNGVPADVAGEIDPRTDKPILRISRHHHGNIKSSLITQDFVA 743 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739 + + + K+ + + S + S QRY Sbjct: 744 GDDYAALAQAAESFRGLIQEGAKVTRGEGEKAKEEKVGDFRQAMAWLISEAERTTSRQRY 803 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 804 KGLGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRA 863 Query: 800 -ALDI 803 +D+ Sbjct: 864 GNIDV 868 >gi|157828742|ref|YP_001494984.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933470|ref|YP_001650259.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa] gi|157801223|gb|ABV76476.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908557|gb|ABY72853.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa] Length = 807 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 428/809 (52%), Positives = 570/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AVKKRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEKKFNESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNAYKVA 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y M F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP+LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKEQLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + K + LN + + +K+ W Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFDPESDLRLKKALDVLNSLEDSPDKTNWEV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R +RG++E +L + SF + I + + L LI + Sbjct: 659 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807 >gi|73667042|ref|YP_303058.1| DNA gyrase subunit B [Ehrlichia canis str. Jake] gi|72394183|gb|AAZ68460.1| DNA gyrase subunit B [Ehrlichia canis str. Jake] Length = 798 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 398/809 (49%), Positives = 550/809 (67%), Gaps = 27/809 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+A SI +LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L G+ + I + Sbjct: 2 DNYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V+DNGRGIP D+H++EG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVG+SV Sbjct: 62 IQSDGSVSVTDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGISV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+WL+L I R G Y M F +G+ PL V G GT +TFLPS +IFS +F Sbjct: 122 VNALSTWLELTIWRNGKEYFMRFEDGVTVKPLSVVGENTYKKGTRITFLPSKNIFSSVNF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK----------GGIEAFVSYLD 237 NY TL+ R+RELSFLNSS+ I+L D R + + ++ G FV YLD Sbjct: 182 NYSTLESRVRELSFLNSSININLKDLRGAQVLNSSFGFRDNSKVSDASDKGTSGFVKYLD 241 Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R+K + + I+G IS++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA Sbjct: 242 RNKTAVT-KIVHIEGIVLEHGISLELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+V Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTV 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ V + L+ E +P A I+++++ ++ R+AAR+AR+L + K D LPGKLA Sbjct: 361 VENIVYEKLTNIFETNPKLAASIIERIIRSAKGREAARKARELIKSKNGFDFTILPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA D++LSS EI Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSAEIA 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M +I G+LY Sbjct: 481 SLITAIGSNIGTENFDIEKIRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIERGYLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +T+ K Y+K+++ L DY+I+ ++ + S DL + + Sbjct: 541 IAQPPLYKVTKHKKEFYIKNDDMLHDYIISNAIKDLTL---TGTNTYSGEDLSQILHQCM 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 I K+ K + ++ +E +I ++ + A ++ LN + + E W Sbjct: 598 NISKITKSYDRIIPQSVLESLII-------FFKKHSFDSADAISEHLNNVFCEYE--WSV 648 Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 I D I + R++ G+ +++ ++ + + S + + I+E + ++L L + I Sbjct: 649 EIPEKDKISIFRLSHGLVDKYYIDNTIMNSDEIRQVIHICDGIDEIFNSMLILSTKDNNI 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 KI P SL+D I G+K +++QR+KGLGEMN+ QLW+TTLNP+TR+LL++KI+D AD Sbjct: 709 KINSPTSLVDNIIEFGKKDMTLQRFKGLGEMNSDQLWDTTLNPETRTLLKLKISDCEAAD 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +FS LMGD VEPRR+FI N+L +D Sbjct: 769 SIFSVLMGDFVEPRRDFINNNALNVQNID 797 >gi|95929989|ref|ZP_01312729.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684] gi|95133958|gb|EAT15617.1| DNA gyrase, B subunit [Desulfuromonas acetoxidans DSM 684] Length = 791 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 388/801 (48%), Positives = 531/801 (66%), Gaps = 15/801 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++Y A++I++L+GL AV+KRP+MYIG T + GLHH++YEV+DN+IDE+L G+ D + V Sbjct: 2 ENNYSAENIKVLEGLTAVRKRPAMYIGSTSSQ-GLHHLVYEVVDNSIDEALAGFCDSVYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN+DGS TV DNGRGIP D H E SAAEV+MT LHAGGKF+ +YKVSGGLHGVGVS Sbjct: 61 TLNVDGSVTVEDNGRGIPVDWHATENKSAAEVVMTVLHAGGKFDSDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSS L+L I+R G IYE ++ GI L GT++TF P + IF + Sbjct: 121 VVNALSSKLELEIRRNGKIYEQTYETGIPKTDLKEVSDT-IKKGTKITFWPDASIFETVE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++Y+ L RLREL+FLN+ V++++ D R+ + +E +Y+GGI +FV YL+R K PL + Sbjct: 180 YSYEVLSKRLRELAFLNAGVRVTITDDRTEKVQE--FYYEGGISSFVEYLNRAKNPLHNN 237 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I G ++ + I++A ++NDGY E + F NNI +GGTHL G ++ALTR + +Y Sbjct: 238 IIFFNGEKEGVQIEIAFQYNDGYDEKIYTFANNINTHEGGTHLVGFKAALTRTMNAYATA 297 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K K SV GDD REG +V+S+K+PDP+F QTK KL +SE++ VE+ +N+ L+ Sbjct: 298 NNLLKNIKASVSGDDLREGMAAVISVKVPDPQFEGQTKTKLGNSEIKGYVETLINEKLAV 357 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P AK I++K ++A+ R+AAR+ARDLTRRKG LD SLPGKLADC E+DP SE Sbjct: 358 YLEENPQVAKKILEKGIEAARAREAARKARDLTRRKGALDGLSLPGKLADCQEKDPALSE 417 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R NQAILPL+GKILNVE++RFDKML+S EI TLITA+G GIG Sbjct: 418 IYIVEGDSAGGSAKQGRDRSNQAILPLKGKILNVEKSRFDKMLTSNEIRTLITAMGAGIG 477 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI K+RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP +I G+LYI +PPLY + + Sbjct: 478 KDDFDIAKIRYHRIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLYIAQPPLYKLKK 537 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y+KDEE+L DYL++ + + +I + + + + D L + Sbjct: 538 GKKEIYLKDEETLLDYLLSIGVENCSIDMNNGDKIIRGKQIIPTLKNIIDYDNLFEKLIH 597 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 K + + + + +++ + L N L A +E + N + IL Sbjct: 598 KGIKRELLKIFVENKIQFNFEDLVDL---NPLVNTLQQAASHAE--FTLLENPARILFTL 652 Query: 667 -IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLL 723 R +Q L+ + S K ++ + +I +K + LL Sbjct: 653 GNVRARIDQKSLDI--LSSHEYKLLLQSFKQLITITKEDVVVIQQEEKEPVSVNDREELL 710 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D S +KG +QRYKGLGEMN QLWETT++P+ R LL+VKI DA D++F+ LMGD Sbjct: 711 DFFLSRAKKGQYIQRYKGLGEMNPEQLWETTMDPEKRVLLQVKIEDAVATDNIFTVLMGD 770 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRREFI+ N+L LDI Sbjct: 771 QVEPRREFIENNALNVSNLDI 791 >gi|296115232|ref|ZP_06833873.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769] gi|295978333|gb|EFG85070.1| DNA gyrase, B subunit [Gluconacetobacter hansenii ATCC 23769] Length = 839 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 425/804 (52%), Positives = 560/804 (69%), Gaps = 12/804 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YDA SI +LKGLDAV+KRP MYIGDTD SGLHHM +E++DNA+DE+ GYA VT Sbjct: 40 ADYDAASISVLKGLDAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATTCIVT 99 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV DNGRGIPTD+H EEGISAAEV++T+LHAGGKFNQ SYKVSGGLHGVG +V Sbjct: 100 LNGDGSVTVRDNGRGIPTDMHHEEGISAAEVVLTKLHAGGKFNQNSYKVSGGLHGVGAAV 159 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W+++RI R G + + F G D PL V G + GT+VTF PS++ F++ +F Sbjct: 160 VNALSEWMEVRIWRNGQEHMIRFRAGERDAPLSVVGDSDEPRGTQVTFKPSAETFAIVEF 219 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + L+ RLREL+FLNS + I L D+R RE Y+GG+ AFV +LD K P+++ P Sbjct: 220 QFSVLERRLRELAFLNSGLAIILRDERHTPVREEAFHYEGGLSAFVEWLDHGKTPIVEPP 279 Query: 248 I--RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +Q + I ++ A+ WND +HE +LCFTNNIPQ+DGG+HL+G R ALTR + Y E Sbjct: 280 ITGSLQNEDNGIKVEFALTWNDSFHETMLCFTNNIPQRDGGSHLAGFRQALTRIVGRYAE 339 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K ++ G+D REG T+VLS+K+PDP+FSSQTK+KLVSSEV+ VV + D +S Sbjct: 340 ANASKKDS-HALAGEDMREGLTAVLSVKVPDPKFSSQTKDKLVSSEVQPVVHAAAADMIS 398 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 W E HP EA+ IV KV+DA+ R+AARRAR+LTRRKGVLDI+SLPGKLADC ERDP KS Sbjct: 399 HWFETHPKEARQIVAKVMDAAAAREAARRARELTRRKGVLDISSLPGKLADCQERDPAKS 458 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGG+AKQGR R QAILPL+GKILNVERARFD+ML S EIGTLITALGTGI Sbjct: 459 ELFIVEGDSAGGTAKQGRDRRFQAILPLKGKILNVERARFDRMLGSAEIGTLITALGTGI 518 Query: 486 GQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G+ F I KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP LI NG+LYI +PP Sbjct: 519 GRGDVEHGGFSIEKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELIENGYLYIAQPP 578 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY RG +Y+KD+ +LE YL++++L+ + D + V + + + + + Sbjct: 579 LYRAKRGNDERYLKDDAALEQYLLDKALAHATLRYGDGREV-TGEAIHTDVAFIRDVARA 637 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + +EQA I+G + +A L +RL+ ++ +SE+ W + + Sbjct: 638 LSRLAVRAPVWVLEQAAIAGALSANPAATPERVIA--LQSRLDAVSMESERGWKVAASAD 695 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + + R RGV E + L+ +S+ S ++ RI ++ + + L + I + GP Sbjct: 696 GLEMARSVRGVGEVYRLDPASLRSAEVRWLAEHHGRIATDFDSKVELSLDSQTIALDGPA 755 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 S+ + I + GR+G+S+ R+KGLGEMN +QLWETTL+P R+LL+V++ D A +FS L Sbjct: 756 SVYERIIAQGRRGLSINRFKGLGEMNDAQLWETTLDPAMRTLLQVRVGDVENAAQVFSTL 815 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD VEPRR+FI N+L LD+ Sbjct: 816 MGDVVEPRRDFIVGNALKVANLDV 839 >gi|94308948|ref|YP_582158.1| DNA gyrase subunit B [Cupriavidus metallidurans CH34] gi|93352800|gb|ABF06889.1| DNA gyrase, subunit B [Cupriavidus metallidurans CH34] Length = 841 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 391/845 (46%), Positives = 523/845 (61%), Gaps = 46/845 (5%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D + +SY A SIQIL+GL+AV+KRP MYIGDT +GLHH+++EVLDN+IDE+L Sbjct: 1 MTDQQKPQQENSYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIP----TDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 GY I VT++ D S ++ DNGRGIP D E SAAE+ MT LHAGGKFNQ S Sbjct: 61 AGYCTEIQVTIHSDNSISIVDNGRGIPPAVKFDDKHEPKRSAAEIAMTELHAGGKFNQNS 120 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-----------------D 156 YKVSGGLHGVGVS VNALS WL+L ++R+G + + F G + Sbjct: 121 YKVSGGLHGVGVSCVNALSKWLRLTVRRDGQVNLIEFAKGEVQNRVIETVTGPDGQPVEV 180 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 +P+ V G A + GTEV FL +IF+ +F+Y+ L R+RELSFLN+ V I L+D+R+ Sbjct: 181 SPMKVIG-ATDKRGTEVHFLADEEIFTNVEFHYEVLSKRIRELSFLNNGVHIKLVDQRTG 239 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + GG++ FV Y++R K L + +D IS+++AM+WNDGY+E VLCF Sbjct: 240 KE--EDFAFSGGVKGFVEYINRSKTTLHPNIFYANAEKDGISVEVAMQWNDGYNEQVLCF 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K GDD REG VLS+K+P+ Sbjct: 298 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEVAKKAKVETSGDDMREGLACVLSVKVPE 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V L+ +L E P +AKII K++DA+ R+AAR+AR Sbjct: 358 PKFSSQTKDKLVSSEVRLPVEELVGKALTDFLLETPNDAKIICGKIVDAARAREAARKAR 417 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGV+D LPGKLADC E+DP SELFLVEGDSAGGSAKQGR R+ QAILPL+GK Sbjct: 418 EMTRRKGVMDGMGLPGKLADCQEKDPAMSELFLVEGDSAGGSAKQGRDRKFQAILPLKGK 477 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERARFDKMLSSQE+ TLITALGTGIG++ +++ KLRYH+IIIMTDADVDG+HIRTL Sbjct: 478 ILNVERARFDKMLSSQEVLTLITALGTGIGKEDYNLEKLRYHRIIIMTDADVDGSHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+RQMP +I G++YI +PPLY I GK +Y+KD+ L Y++ ++ + Sbjct: 538 LLTFFYRQMPDIIERGYVYIAQPPLYKIKHGKEERYIKDDNELNAYMLKLAMEKASLSRP 597 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI-------SGVFNCESDQE 629 D I+ L + +I D + + S Sbjct: 598 DGSE-INGEALTELARQYQLAEGVIGRLSRIVDVDALRAIADGVALDLDNAAAAEASAVA 656 Query: 630 INVSLASKLANRL------NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683 + LA A L + + + +++ R G ++ + Sbjct: 657 LKAKLAEMHAKTLLGAAVNDDGTADVYAQFDEKTDKHRLMIARRHHGNVRLSHVDADFVH 716 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRY 739 + + + + + + + S +G+S QRY Sbjct: 717 GADYAALARAATTFQGLIPDGTKVRRGEGEKMREQTVADFHQAMQWLLSEAERGVSRQRY 776 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QL+ETTL+ R LLRV+I DA AD +F+ LMGDEVEPRR FI+ N+L + Sbjct: 777 KGLGEMNPEQLFETTLDVTQRRLLRVQIEDAIAADQIFTTLMGDEVEPRRNFIESNALVA 836 Query: 800 -ALDI 803 +D+ Sbjct: 837 RNIDV 841 >gi|330822656|ref|YP_004385959.1| DNA gyrase subunit B [Alicycliphilus denitrificans K601] gi|329308028|gb|AEB82443.1| DNA gyrase, B subunit [Alicycliphilus denitrificans K601] Length = 860 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 386/843 (45%), Positives = 526/843 (62%), Gaps = 53/843 (6%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ Sbjct: 22 YGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 81 Query: 70 MDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVG Sbjct: 82 TDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVG 140 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTE 172 VS VNALS L+L ++R+G +++ F G++ +P+ + G GTE Sbjct: 141 VSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTE-KRGTE 199 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V FLP ++IF DF+Y+ L RLRELSFLN+ V+I LID+R+ + GG++ Sbjct: 200 VRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVKG 257 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIP 281 FV +++ KK L + GSR I +++AM+WNDGY+E VLCFTNNIP Sbjct: 258 FVEFINGTKKVLHPTAFHATGSRPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIP 317 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+FSS Sbjct: 318 QRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSS 377 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRR Sbjct: 378 QTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRR 437 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE Sbjct: 438 KGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 497 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDG 510 +AR++K+LSS EI TLITALGTGIG+ D FD KLRYH+IIIMTDADVDG Sbjct: 498 KARYEKLLSSNEIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDG 557 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+++L+ +L+ Sbjct: 558 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNH 617 Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 ++ ++L +++I D + A FN ++ ++ Sbjct: 618 ASISTGGDAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLED 677 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIFSF 685 S A G I + + + R G + ++ + Sbjct: 678 AQASAVQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGD 737 Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + ++ + KI+ + + + + QRYKG Sbjct: 738 DYAALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKG 797 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 857 Query: 801 LDI 803 +D+ Sbjct: 858 IDV 860 >gi|319790697|ref|YP_004152337.1| DNA gyrase, b subunit [Variovorax paradoxus EPS] gi|315593160|gb|ADU34226.1| DNA gyrase, B subunit [Variovorax paradoxus EPS] Length = 873 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 387/848 (45%), Positives = 532/848 (62%), Gaps = 53/848 (6%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++SY SI IL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 30 LADTSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDI 89 Query: 65 TVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGG Sbjct: 90 VVTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGG 148 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGN 167 LHGVGVS VNALS L+L ++REG I+E+ F G + +P+ + G + Sbjct: 149 LHGVGVSCVNALSIKLRLIVRREGKIHELEFSRGFVQNRLLETVNGFEVSPMKIIGDT-D 207 Query: 168 DTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I L+D+R+ + Sbjct: 208 KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLLDERTGKE--DDFSGA 265 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCF 276 GG+ FV ++++ K L + G + +I +++AM+WN GY+E VLCF Sbjct: 266 GGVRGFVEFINKGKTVLHPNSFYAAGEKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCF 325 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+ Sbjct: 326 TNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPE 385 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR+ VE V L+ +L+E P +AKII K+++A+ R+AAR+AR Sbjct: 386 PKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGKIVEAARAREAARKAR 445 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKGVLD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ QAILPLRGK Sbjct: 446 EMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGK 505 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMTDA 506 ILNVE+AR++K+L+S EI T+ITALGTGIG+ D F++ KLRYH+IIIMTDA Sbjct: 506 ILNVEKARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDA 565 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK QY+KD +L+ +L+ Sbjct: 566 DVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKV 625 Query: 567 SLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 +L + S ++ + L + +I D + + + Sbjct: 626 ALKDARIETGGASSTTLTGDTLAELARKHQVAESVIARLRNFMDAEALRAIADGVALDLD 685 Query: 626 SDQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681 + S + A I + + + + + R G + V+ Sbjct: 686 TTPAAEASAVALQAKLRELNTTGIPAEVSNEFDARTDKPLLRISRRHHGNIKSSVITQDF 745 Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGD-----KIKITGPCSLLDTIFSIGRKGISM 736 + +N T +L+ G+ + K+ + + S + S Sbjct: 746 VHGADYAALAEAANTFRGLLSTEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATSR 805 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N+ Sbjct: 806 QRYKGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQNA 865 Query: 797 LP-SALDI 803 L + +D+ Sbjct: 866 LRAANIDV 873 >gi|319760741|ref|YP_004124678.1| DNA gyrase, b subunit [Alicycliphilus denitrificans BC] gi|317115302|gb|ADU97790.1| DNA gyrase, B subunit [Alicycliphilus denitrificans BC] Length = 860 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 385/843 (45%), Positives = 526/843 (62%), Gaps = 53/843 (6%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ Sbjct: 22 YGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 81 Query: 70 MDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVG Sbjct: 82 TDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVG 140 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDTGTE 172 VS VNALS L+L ++R+G +++ F G++ +P+ + G GTE Sbjct: 141 VSCVNALSKKLRLTVRRDGKTHQLEFSKGVVQNRLIEVVDGFEVSPMKIVGPTE-KRGTE 199 Query: 173 VTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V FLP ++IF DF+Y+ L RLRELSFLN+ V+I LID+R+ + GG++ Sbjct: 200 VRFLPDTEIFKENSDFHYEILAKRLRELSFLNNGVRIRLIDERTGKE--DDFSGAGGVKG 257 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIP 281 FV +++ KK L + G+R I +++AM+WNDGY+E VLCFTNNIP Sbjct: 258 FVEFINGTKKVLHPTAFHATGARPAESYGGIPGTEIGVEVAMQWNDGYNEQVLCFTNNIP 317 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+FSS Sbjct: 318 QRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVDVSGDDMREGLCCVLSVKVPEPKFSS 377 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRR Sbjct: 378 QTKDKLVSSEVRAPVEDIVAKALTEYLEEKPQDAKILCGKIVEAARAREAARKAREMTRR 437 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE Sbjct: 438 KGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 497 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDG 510 +AR++K+LSS EI TLITALGTGIG+ D FD KLRYH+IIIMTDADVDG Sbjct: 498 KARYEKLLSSNEIITLITALGTGIGKASEDGNGKSGADDFDAAKLRYHRIIIMTDADVDG 557 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+++L+ +L+ Sbjct: 558 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDAAALDNFLLRVALNH 617 Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 ++ ++L +++I D + A FN ++ ++ Sbjct: 618 ASISTGGDAPRTLAGDELATLARTHQHAERVIDRLSAFMDAEALRAAADGVAFNLDTLED 677 Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSI----NNSDILVKRIARGVQEQFVLEGSSIFSF 685 S A G I + + + R G + ++ + Sbjct: 678 AQASAVQLQARLRELNTSGVPADVTGEIDPRTDKPILRISRHHHGNIKSSLITQDFVAGD 737 Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + ++ + KI+ + + + + QRYKG Sbjct: 738 DYAALAEAAESFRGLIQEGAKVMRGEGEKQKEEKISDFRQAMQWLIGEAERTTARQRYKG 797 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 798 LGEMNPEQLWETTMDPEVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 857 Query: 801 LDI 803 +D+ Sbjct: 858 IDV 860 >gi|328952219|ref|YP_004369553.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109] gi|328452543|gb|AEB08372.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109] Length = 803 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 377/797 (47%), Positives = 524/797 (65%), Gaps = 9/797 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y AD+I++L GL+AV++RPSMYIG+T G GLHH++YEV+DN+IDE+L GY + I VT+ Sbjct: 14 DYGADNIRVLGGLEAVRQRPSMYIGNT-GPEGLHHLVYEVVDNSIDEALAGYCNQIQVTI 72 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S TV DNGRGIP DLHKEE + A EV+MT+LHAGGKF+ K+Y+VSGGLHGVGVSVV Sbjct: 73 HSDNSVTVEDNGRGIPVDLHKEENLPAVEVVMTKLHAGGKFDHKTYQVSGGLHGVGVSVV 132 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS +L++ I+R+G +Y + G L +TG GT+++F P ++IFS F+ Sbjct: 133 NALSEYLEVEIRRDGRVYHQRYEQGNTSTQLAITGETK-RRGTKISFKPDAEIFSETTFS 191 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 YD L RLRELSFLN V+I L D+RS + + +Y+GGI+ FV +L+R+K + + PI Sbjct: 192 YDILATRLRELSFLNRGVRIMLEDERSGKKND--FYYEGGIQEFVIFLNRNKTLMHEPPI 249 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + GSR + I++A ++ND Y+E + + NNI ++GGTHLSG ++ LTR I Y+ + Sbjct: 250 YLNGSRAEVIIEIAFQYNDTYNEQIFTYANNINTREGGTHLSGFKAGLTRCINQYMATAD 309 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K K + GDD REG T V+SIK+PDP+F QTK KL +S+++ +VE+ V + L +L Sbjct: 310 LPKNLKEHLTGDDVREGLTGVISIKLPDPQFEGQTKTKLGNSDIKGLVENLVYENLLTYL 369 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 E+P AK I+ KV++A+ R+AARRA++L R+KG L +LPGKLADC ERDP + EL+ Sbjct: 370 GENPTIAKQILAKVIEAARAREAARRAKELARKKGGLSELALPGKLADCQERDPSRRELY 429 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQ R R QAILPL+GKILNVE+AR+DKML SQEI TLITALG GIG++ Sbjct: 430 LVEGDSAGGSAKQARDRRFQAILPLKGKILNVEKARYDKMLQSQEIRTLITALGAGIGKE 489 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 D+ KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQM LI G+LYI +PPLY +TRG Sbjct: 490 EQDLEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMAELISRGYLYIAQPPLYRLTRGN 549 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 Y+KDE +DYL+ + L ++ +S+ I+ L ++ + + F Sbjct: 550 EKIYLKDEGPFQDYLLARGLDKKTLTLGNSQT-ITNAALITYLKKVISHQHSMDRFEKRG 608 Query: 609 -DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667 D+ +++ + G+ + E ++ L + +LV Sbjct: 609 VDRQLLKRIIDLGLIDKEFLRQREK--MQTWGEALRSTGLQIRLEADEEHQAWKLLVYNP 666 Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727 + ++ + + + E L +I L+ + Sbjct: 667 GVNDGNPWCVDWELLSGSDFQTLVKLQQALAELRQPPYRLQEGAKTWEIATLEELVQVVL 726 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 + G+KG+S+QR+KGLGEMN QLWETT++P+TR+LL+V I DA AD++F+ LMGD+VEP Sbjct: 727 NEGQKGLSVQRFKGLGEMNPEQLWETTMDPETRTLLQVNIEDAVAADEIFTILMGDKVEP 786 Query: 788 RREFIQENSLP-SALDI 803 RR+FIQ N+L S LDI Sbjct: 787 RRDFIQNNALELSQLDI 803 >gi|229586917|ref|YP_002845418.1| DNA gyrase subunit B [Rickettsia africae ESF-5] gi|228021967|gb|ACP53675.1| DNA gyrase subunit B [Rickettsia africae ESF-5] Length = 807 Score = 843 bits (2178), Expect = 0.0, Method: Composition-based stats. Identities = 426/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y M F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + + K + LN + + S+K+ W Sbjct: 599 FNDLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSSDKTNWEV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I +RG++E +L + SF + I + + L I + Sbjct: 659 LKHENKIEFFCFSRGLKESKILLKEQLESFEFVQISKLALTICDIFSKQLKFIVKSQEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPGQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807 >gi|68171653|ref|ZP_00545017.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88657694|ref|YP_507430.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas] gi|67998927|gb|EAM85614.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa] gi|88599151|gb|ABD44620.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas] Length = 798 Score = 842 bits (2176), Expect = 0.0, Method: Composition-based stats. Identities = 399/809 (49%), Positives = 547/809 (67%), Gaps = 27/809 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y+A SI +LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L G+ + I + Sbjct: 2 DDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIV 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V DNGRGIP D+H++EG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVG+SV Sbjct: 62 IQSDGSVSVVDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGISV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSSWL+L I R G Y M F +GI L V G GT++TFLPS +IFS +F Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVKSLSVVGENTTKKGTKITFLPSKNIFSSINF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM----------FYKGGIEAFVSYLD 237 +Y TL++R+RELSFLNS++ ++L D R + + G AFV YLD Sbjct: 182 SYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVNDIEDRGTAAFVKYLD 241 Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R+K + + I+G IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSA Sbjct: 242 RNKTAVT-KVVHIEGIVLEHGISLELSMHWNDSYYENMLCFTNNIRQKDGGTHLAGFRSA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y KK K +++G+D REG T VL+IK+PDP+FSSQTK+KLVSSE R+ Sbjct: 301 MTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSSEARTA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ V + L+ E +P A I+++++ ++ R+AARRARDL + K D LPGKLA Sbjct: 361 VENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTILPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA D++LSS EI Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSAEIA 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M +I G+LY Sbjct: 481 SLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIEKGYLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +T+ K Y+K+++ L DY+IN ++ + ++ S N L + + Sbjct: 541 IAQPPLYKVTKHKKEFYIKNDDMLHDYIINNAVKDLTL---NAGESYSGNSLSKVLHQCM 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 I K+ K + + +E +I ++ N A +++ LN + + E W Sbjct: 598 NISKITKSYDRVIPQHVLESLII-------FFRKHNFDSAGAISDHLNKVFCEYE--WSV 648 Query: 656 SI-NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 I +I + R++ G+ +++ + + + S K+ + IE+ + + L + I Sbjct: 649 EIPKEDEISIFRLSHGLVDKYYINSAMMNSEDIKHVIAMCDGIEDIFYNMPILSTKDNNI 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 KI+ P SL+D I G+K +++QR+KGLGEMNA QLW+TTLNP+TR+LL++KI D AD Sbjct: 709 KISSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPETRTLLKIKIADCEAAD 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +FS LMGD VEPRR+FI N+L +D Sbjct: 769 SIFSVLMGDFVEPRRDFINNNALNVQNID 797 >gi|241765810|ref|ZP_04763750.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN] gi|241364292|gb|EER59447.1| DNA gyrase, B subunit [Acidovorax delafieldii 2AN] Length = 874 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 385/843 (45%), Positives = 523/843 (62%), Gaps = 49/843 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + SY +I IL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 36 ASESYGEGAITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 95 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 96 VTIHSDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 154 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168 HGVGVS VNALS L+L ++REG ++ + F G + +P+ VTG + Sbjct: 155 HGVGVSCVNALSKKLRLTVRREGKVHVLEFSKGFVQNRIIETVDGVEVSPMKVTGET-DK 213 Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I L D+RS + G Sbjct: 214 RGTEVHFLPDTEIFKENNEFHYEILAKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 271 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277 G+ FV ++++ K L + G R +I +++AM+WN Y E VLCFT Sbjct: 272 GVRGFVEFINKGKTVLHPTSFYAAGERPAETYGGIPGTHIGVEVAMQWNSAYTEQVLCFT 331 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 NNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P Sbjct: 332 NNIPQRDGGTHLTGLRAAMTRVINKYIEENELAKKAKVEVTGDDMREGLCCVLSVKVPEP 391 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 +FSSQTK+KLVSSEVR+ VE V L+ +L+E P +AKII K+++A+ R+AAR+AR+ Sbjct: 392 KFSSQTKDKLVSSEVRAPVEDIVGKLLTDYLQEKPNDAKIICGKIVEAARAREAARKARE 451 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 +TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKI Sbjct: 452 MTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 511 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDG 510 LNVE+AR++K+L+S EI TLITALGTGIG+ D FD+ KLRYH+IIIMTDADVDG Sbjct: 512 LNVEKARYEKLLTSNEILTLITALGTGIGKAGGSTGSDDFDVAKLRYHRIIIMTDADVDG 571 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+ +L+ +L+ Sbjct: 572 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDAPALDGFLLRIALNH 631 Query: 571 EIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + +S + L + +I D + ++ E Sbjct: 632 ASVTTGGANPQTLSGDTLAELARKHQIAESVIARLGNFMDAEALRAIADGVSLKLDTVAE 691 Query: 630 INVSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 S + A LN +E + + + + R G + V+ + Sbjct: 692 AEASAIALQAKLRELNTTGAPAEVAGEFDARTDKPLLRISRRHHGNIKSSVITQDFVQGA 751 Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + ++ + K+ + + S + S QRYKG Sbjct: 752 DYAALAEAAETFRGLLSEGAKVMRGEGDKQKEEKVGDFRQAMKWLISEAERTTSRQRYKG 811 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 812 LGEMNPEQLWETTMDPNVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIETNALRAGN 871 Query: 801 LDI 803 +D+ Sbjct: 872 IDV 874 >gi|292572202|gb|ADE30117.1| DNA gyrase subunit B [Rickettsia prowazekii Rp22] Length = 807 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 421/809 (52%), Positives = 565/809 (69%), Gaps = 8/809 (0%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS + SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DN+IDE+L Sbjct: 1 MSVIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q+SYK+S Sbjct: 61 AGYCDLVQVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQQSYKIS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL + + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S F+ +F++ T++HRLREL+FLNS V+I L+D R E +++ +Y GGIEA+V Y+D Sbjct: 181 SVGTFTNIEFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVQYID 240 Query: 238 RHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTVHVESGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIR LLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLKKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + G S Y+K+E++L++YLI ++++ D + + +L + I+ +K Sbjct: 540 AQPPLYKVKSGASELYLKNEKALQNYLIKSTINDTYL-ILDGQEQLVGENLEDLINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ +FN + + + + K + LN + E +K+ Sbjct: 599 FNNLLDHVSKKFNRSITEILAINDLFNKKIFEPESSARLQKALDILNNLEESPDKTNLQV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I +RG++E +L + F F+ I + + L LI Sbjct: 659 LKHENKIEFFHFSRGLKETKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKSKAFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G+KGI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEVDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDV 807 >gi|15604433|ref|NP_220951.1| DNA gyrase subunit B [Rickettsia prowazekii str. Madrid E] gi|6647531|sp|Q9ZCX2|GYRB_RICPR RecName: Full=DNA gyrase subunit B gi|3861127|emb|CAA15027.1| DNA GYRASE SUBUNIT B (gyrB2) [Rickettsia prowazekii] Length = 807 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 421/809 (52%), Positives = 565/809 (69%), Gaps = 8/809 (0%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS + SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DN+IDE+L Sbjct: 1 MSVIEEKCNESSYSADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNSIDEAL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q+SYK+S Sbjct: 61 AGYCDLVQVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQQSYKIS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL + + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYFIRFNNGITEAPLSIVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S F+ +F++ T++HRLREL+FLNS V+I L+D R E +++ +Y GGIEA+V Y+D Sbjct: 181 SVGTFTNIEFDFVTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVQYID 240 Query: 238 RHKKPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + IS++LA+ WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTVHVESGISLELALHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKTKHDFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPTEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIR LLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRALLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + G S Y+K+E++L++YLI ++++ D + + +L + I+ +K Sbjct: 540 AQPPLYKVKSGASELYLKNEKALQNYLIKSTINDTYL-ILDGQEQLVGENLEDLINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ +FN + + + + K + LN + E +K+ Sbjct: 599 FNNLLDHVSKKFNRSITEILAINDLFNKKIFEPESSARLQKALDILNNLEESPDKTNLQV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I +RG++E +L + F F+ I + + L LI Sbjct: 659 LKHENKIEFFHFSRGLKETKILLKEQLELFEFVEISQFALSIFDIFSKRLKLIVKSKAFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G+KGI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIECGKKGITIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEVDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVMNLDV 807 >gi|157825960|ref|YP_001493680.1| DNA gyrase subunit B [Rickettsia akari str. Hartford] gi|157799918|gb|ABV75172.1| DNA gyrase subunit B [Rickettsia akari str. Hartford] Length = 807 Score = 841 bits (2172), Expect = 0.0, Method: Composition-based stats. Identities = 424/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H+EEG SAAEVIMT+LHAGGKF+Q SYKVS Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGTSAAEVIMTQLHAGGKFDQNSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI P+ V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITAAPIAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S++ F+ +F++ T++HRLREL+FLNS V+I +D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SAETFTNIEFDFGTIEHRLRELAFLNSGVKILFVDNRFEEVKEVEFYYMGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN++CFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENADSGISLELAMHWNDSYHENIMCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKFKNDFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP E+K I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAELYLKNEQALQDYLIKSTINDATL-TLDGKEQLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L++ +++ E I+ + N + + + K + LN + E +K+ W Sbjct: 599 FNGLLEHASKKFNRSITEILAINDLLNNKIFEAESDLRLEKALDVLNSLEESPDKTNWEI 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R + G++E +L + SF + I + + L LI + Sbjct: 659 LKHENKIEFFRFSMGLKESKILLKEQLESFEFIQISKLALTIFDIFSKKLKLIVKSQECG 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I LL+TI G+KGI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTASQLLNTIIECGKKGINIQRFKGLGEMNSDQLWETTLDPAKRTLLQVRVAEVDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +FS LMGD VEPRR FIQEN+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQENALNVMNLDV 807 >gi|120608717|ref|YP_968395.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1] gi|120587181|gb|ABM30621.1| DNA gyrase subunit B [Acidovorax citrulli AAC00-1] Length = 877 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 381/846 (45%), Positives = 530/846 (62%), Gaps = 53/846 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 67 TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 T++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLH Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 154 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFI------------NGILDNPLVVTGSAGNDT 169 GVGVS VNALS L+L ++R+G ++ + F NG+ +P+ VTG + Sbjct: 155 GVGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKR 213 Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I L D+R+ + GG Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGG 271 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278 + FV +++ KK L + GSR I +++AM+WNDG++E+VLCFTN Sbjct: 272 VMGFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTN 331 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+ Sbjct: 332 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPK 391 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++ Sbjct: 392 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREM 451 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKIL Sbjct: 452 TRRKGVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 511 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDAD 507 NVE+AR++K+L+S EI TLITALGTGIG+ D F+++KLRYH+IIIMTDAD Sbjct: 512 NVEKARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDAD 571 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+ +L+ + Sbjct: 572 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVA 631 Query: 568 L-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 L + + + L + +I+ D+ + N ++ Sbjct: 632 LRDASVTTGGEQARTLDGETLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDT 691 Query: 627 DQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682 ++ S + A + + + + + + R G + ++ + Sbjct: 692 VEDAEASAVALQAKLRELTTTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFV 751 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738 ++ ++ + K++ + + + S QR Sbjct: 752 HGADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQR 811 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L Sbjct: 812 YKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALR 871 Query: 799 S-ALDI 803 + +D+ Sbjct: 872 AGNIDV 877 >gi|326314826|ref|YP_004232498.1| DNA gyrase subunit B [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371662|gb|ADX43931.1| DNA gyrase, B subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 877 Score = 840 bits (2171), Expect = 0.0, Method: Composition-based stats. Identities = 382/846 (45%), Positives = 529/846 (62%), Gaps = 53/846 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 67 TLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 T++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGLH Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 154 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFI------------NGILDNPLVVTGSAGNDT 169 GVGVS VNALS L+L ++R+G ++ + F NG+ +P+ VTG + Sbjct: 155 GVGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKR 213 Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I L D+R+ + GG Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGG 271 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFTN 278 + FV +++ KK L + GSR I +++AM+WNDG++E+VLCFTN Sbjct: 272 VMGFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTN 331 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P+ Sbjct: 332 NIPQRDGGTHLTGLRAAMTRVIGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPK 391 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++ Sbjct: 392 FSSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREM 451 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKIL Sbjct: 452 TRRKGVLDGMGLPGKLADCQEKDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 511 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQ-----------DSFDINKLRYHKIIIMTDAD 507 NVE+AR++K+L+S EI TLITALGTGIG+ D F+++KLRYH+IIIMTDAD Sbjct: 512 NVEKARYEKLLTSNEILTLITALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDAD 571 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L+ +L+ + Sbjct: 572 VDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVA 631 Query: 568 L-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 L + + + L + +I+ D+ + N ++ Sbjct: 632 LRDASVTTGGEQARTLDGETLGTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDT 691 Query: 627 DQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682 ++ S + A + + + + + + R G + V+ + Sbjct: 692 VEDAEASAVALQAKLRELTTTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFV 751 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQR 738 ++ ++ + K+ + + + S QR Sbjct: 752 HGADYAALAEAAHTFRGLLGEGAKVLRGEGERQREEKVGDFRQAMAWLIKEAERTTSRQR 811 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P+ R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L Sbjct: 812 YKGLGEMNPEQLWETTMDPEVRRLLRVQIEDAIEADRVFTMLMGDEVEPRRDFIETNALR 871 Query: 799 S-ALDI 803 + +D+ Sbjct: 872 AGNIDV 877 >gi|157964719|ref|YP_001499543.1| DNA gyrase subunit B [Rickettsia massiliae MTU5] gi|157844495|gb|ABV84996.1| DNA gyrase subunit B [Rickettsia massiliae MTU5] Length = 808 Score = 840 bits (2170), Expect = 0.0, Method: Composition-based stats. Identities = 422/809 (52%), Positives = 565/809 (69%), Gaps = 10/809 (1%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AV+KRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 4 MSEIEEKFNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 63 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY +++ VTLN +GS TVSDNGRGIP ++H+EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 64 AGYCNLVRVTLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNTYKVA 123 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y + F NGI + PL V + GTEVTF P Sbjct: 124 GGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNGITEAPLAVVKENIDKKGTEVTFFP 183 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +++ +Y GGIEA+V Y+D Sbjct: 184 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKKVEFYYTGGIEAYVKYID 243 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + +S +LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 244 RAKHAIHPCIVVNTENVESGMSFELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 303 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + K GDD REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 304 TRVITSYLDTTNKK--AKNDFSGDDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 361 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 362 ENAVYTKVLEWFEEHPAEAKAIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 422 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 482 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 540 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 541 AQPPLYKVKKGAAELYLKNEQALQDYLIKSTINDTTL-ILDCKEQLVGDNLEELINKVVK 599 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + + K + LN + + +K+ W Sbjct: 600 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 659 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I R +RG++E +L + SF + I + + L LI + Sbjct: 660 LKHENKIEFFRFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 719 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 720 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 779 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 780 IFSTLMGDVVEPRRLFIQANALNVVNLDV 808 >gi|58038495|ref|YP_190459.1| DNA gyrase subunit B [Gluconobacter oxydans 621H] gi|58000909|gb|AAW59803.1| DNA gyrase subunit B [Gluconobacter oxydans 621H] Length = 814 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 418/819 (51%), Positives = 554/819 (67%), Gaps = 21/819 (2%) Query: 1 MSDNIQN--------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 MS+ Y A SI +LKGLDAV+KRP MYIGDTD SGLHHM++E++DNA Sbjct: 1 MSETQNQPEIPGADGEDYGASSISVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEIIDNA 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 +DE+ G+A +TLN DGS +V D+GRGIPTDLH EEGISAAEV++T+LHAGGKFNQ Sbjct: 61 VDEAQAGHATYCILTLNGDGSVSVRDDGRGIPTDLHPEEGISAAEVVLTKLHAGGKFNQN 120 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVG +VVNALS W+++RI R G +++ F +G D L V G + D GT Sbjct: 121 SYKVSGGLHGVGAAVVNALSEWMEVRIWRNGLEHKIRFQHGERDEALHVIGPSSEDRGTL 180 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 VTF PS F+ DF+ L+ R+REL+FLNS + I L D+R EP+E+ Y GG+ AF Sbjct: 181 VTFKPSKQTFTKVDFDISILERRVRELAFLNSGMLIILRDERHAEPKELRFHYDGGLSAF 240 Query: 233 VSYLDRHKKP--LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +LD K I I ++ A+ WND YHE +LCFTNNIPQ+DGGTHL+ Sbjct: 241 AEWLDSSKTSIVTPPITGEIDNPESGIRVEFALTWNDSYHETMLCFTNNIPQRDGGTHLA 300 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G R ALTR + Y E +K++ S+ G+D REG T+VLS+K+PDP+FSSQTK+KLVSS Sbjct: 301 GFRQALTRVVGKYAE--GVAKREAGSLTGEDMREGMTAVLSVKVPDPKFSSQTKDKLVSS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV+ VV + +D +S W E HP EAK IV K++DA+ R+AARRAR+LTRRKGVLD++SL Sbjct: 359 EVQPVVHAAASDAISHWFETHPKEAKAIVAKIIDAASAREAARRARELTRRKGVLDVSSL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADC ERD K+E+F+VEGDSAGG+AKQGR R QAILPLRGKILNVERARFD+ML Sbjct: 419 PGKLADCQERDASKAEIFIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVERARFDRMLG 478 Query: 471 SQEIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 S EIGTLITALGTGIG+ F KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQM Sbjct: 479 SAEIGTLITALGTGIGRGEVDQGGFSAEKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 P LI G+LYI +PPLY RG+ +Y+KD+ +LE YL++++L+ F D + ++ Sbjct: 539 PELIEQGYLYIAQPPLYRAKRGQEERYLKDDAALEQYLLDKALANASLRFADGRE-LTGE 597 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 L + + ++ +EQA ISGV + + + S ++ RL+ Sbjct: 598 PLAEEVAFLSAAARRLQSIASKVPVWVMEQAAISGVLDSDI--AVATSRMAEFQQRLDGA 655 Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 + +E+ W SI+ + + R RGV E + +E S + S +++ R+ ++ + Sbjct: 656 SLSNERGWKVSISETGLECARSVRGVGEVYRIEPSLLRSAEARWLVSEWERLARDFAKPV 715 Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 +L + ++ GP ++++ I GR+G+++ R+KGLGEMN QLW TTL+P TR+LL+V Sbjct: 716 TLTLDPTAYELFGPAAVMERILLQGRRGLTINRFKGLGEMNDEQLWHTTLDPSTRTLLQV 775 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++ D A +FS LMGD VEPRR+FI N+L LD+ Sbjct: 776 RVGDVEDAGQVFSTLMGDVVEPRRDFIVGNALKVANLDV 814 >gi|34581483|ref|ZP_00142963.1| DNA gyrase subunit B [Rickettsia sibirica 246] gi|28262868|gb|EAA26372.1| DNA gyrase subunit B [Rickettsia sibirica 246] Length = 807 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 427/809 (52%), Positives = 568/809 (70%), Gaps = 8/809 (0%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ SSY ADSI++LKGL+AVKKRP MYIGD SGLHHMIYEV+DNAIDESL Sbjct: 1 MSEIEEKFNESSYGADSIKVLKGLEAVKKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESL 60 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D++ VTLN +GS TVSDNGRGIP ++H EEGISAAEVIMT+LHAGGKF+Q +YKV+ Sbjct: 61 AGYCDLVRVTLNKNGSVTVSDNGRGIPVEIHGEEGISAAEVIMTQLHAGGKFDQNAYKVA 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+LRI R Y M F NGI + PL V + GTEVTF P Sbjct: 121 GGLHGVGVSVVNALSEWLELRIWRNNKEYLMRFNNGITEAPLAVVKENIDKKGTEVTFFP 180 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S + F+ +F++ T++HRLREL+FLNS V+I L+D R E +E+ +Y GGIEA+V Y+D Sbjct: 181 SVETFTNIEFDFGTIEHRLRELAFLNSGVKILLVDNRFEEVKEVEFYYTGGIEAYVKYID 240 Query: 238 RHKKPLMQSP-IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 R K + + + + IS++LAM WND YHEN+LCFTNNI Q+DGGTHLS +SA+ Sbjct: 241 RAKHAIHPCIVVNTENAESGISLELAMHWNDSYHENILCFTNNIRQRDGGTHLSAFKSAI 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR ITSY++ + +KK K G+D REG VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 301 TRVITSYLDTTGLNKKAKNYFSGEDTREGLCCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ V + W EEHP EAK I+ K+++A+ R+AAR+AR+LTRRK L++++LPGKLAD Sbjct: 361 ENAVYTKVLEWFEEHPAEAKSIIAKIMEAANAREAARKARELTRRKSALEVSNLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C +DP SELF+VEGDSAGG+AKQGR + QAILPLRGKILNVERARFDKML S +IGT Sbjct: 421 CHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGT 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITALG + ++ F + KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP LI+ G+LYI Sbjct: 481 LITALGISVERE-FSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G + Y+K+E++L+DYLI ++++ D K + ++L I+ +K Sbjct: 540 AQPPLYKVKKGAAEFYLKNEQALQDYLIKSTINDATL-ILDDKERLVGDNLEELINKVVK 598 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS-WHG 655 + L+ +++ E I+ + N + + + K + LN + + +K+ W Sbjct: 599 FNGLLDHASKKFNRSITEILAINDLLNNKIFEPESDLRLKKALDVLNSLEDSPDKTNWEV 658 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + I +RG++E +L + SF + I + + L LI + Sbjct: 659 LKHENKIECFCFSRGLKESKILLKEQLESFEFVQISKLALTIFDIFSKQLKLIVKSQEFD 718 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I P LL+TI G++GI++QR+KGLGEMN+ QLWETTL+P R+LL+V++ + +A+ Sbjct: 719 ILTPSQLLNTIIECGKRGINIQRFKGLGEMNSDQLWETTLDPTKRTLLQVRVAEIDEAEG 778 Query: 776 LFSRLMGDEVEPRREFIQENSLP-SALDI 803 +FS LMGD VEPRR FIQ N+L LD+ Sbjct: 779 IFSTLMGDVVEPRRLFIQANALNVVNLDV 807 >gi|225629988|ref|YP_002726779.1| DNA gyrase, B subunit [Wolbachia sp. wRi] gi|225591969|gb|ACN94988.1| DNA gyrase, B subunit [Wolbachia sp. wRi] Length = 809 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 395/808 (48%), Positives = 538/808 (66%), Gaps = 19/808 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +SY+AD+I+IL+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDESL GY D Sbjct: 13 NTMENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDK 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V++N DGS +V+DNGRGIPTD+H+EEGISAAEVIMT+LHAGGKF+ +YKVSGGLHGV Sbjct: 73 IEVSINKDGSVSVTDNGRGIPTDIHEEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGV 132 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+SVVNALSSWL+L I R + M F +G PL V N GT+VTF+PS++ F+ Sbjct: 133 GISVVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFN 192 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDR 238 +F+Y TL+ R+REL+FLNS++ I+L D R+ E + Sbjct: 193 GINFSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLD 252 Query: 239 HKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 K + ++G IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSAL Sbjct: 253 KNKTHVTKIASMKGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSAL 312 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I +Y KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VV Sbjct: 313 TRCINTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVV 372 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V+D LS LE P A IV++ + ++ R+AAR+AR+L + K +DIA+LPGKLAD Sbjct: 373 ESIVSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLAD 432 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+ P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER D++ SS EIG+ Sbjct: 433 CQEKAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGS 492 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M +I G+LYI Sbjct: 493 LITAIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYI 552 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY +T+ Y+KD+E+ E+Y+IN ++ ++ NDLR ++ + Sbjct: 553 AQPPLYKVTKNAKDTYIKDDETFEEYIINSAVKRLTLSSTATE----FNDLRLILNKCVS 608 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 I + K++ + +E +I ++ +S A + L + + Sbjct: 609 ISNISKNYDREIPQNLLESLLIL-------SKKNALSSADDILKYLKLMYSEYTWEVEIK 661 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 +I + ++ +G+ ++++ S + + + I + L +I+I Sbjct: 662 DEEKEIHISKLFQGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRI 721 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 T P +L I G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I D +AD + Sbjct: 722 TSPSTLAKIIMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIKDCEEADSI 781 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FS LMGD VEPRR+FI N+L +DI Sbjct: 782 FSILMGDIVEPRRDFINSNALNVHDVDI 809 >gi|190571487|ref|YP_001975845.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018889|ref|ZP_03334697.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357759|emb|CAQ55211.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995840|gb|EEB56480.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 790 Score = 840 bits (2169), Expect = 0.0, Method: Composition-based stats. Identities = 403/805 (50%), Positives = 542/805 (67%), Gaps = 24/805 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y+AD+I+IL+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDESL GY I V Sbjct: 2 ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCSKIEV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N DGS +V+DNGRGIPTD+H EEGISAAEVIMT+LHAGGKF+ +YKVSGGLHGVG+S Sbjct: 62 SINEDGSVSVTDNGRGIPTDIHPEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSSWL+L I R + M F +G L + N GT VTF+PS+ FS D Sbjct: 122 VVNALSSWLELTIWRNKKEHFMRFEDGESIESLKIINENTNKRGTRVTFMPSTGTFSSID 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG------GIEAFVSYLDRHK 240 F+Y TL+ R+REL+FLNS+++I L D R+ E G FV YLD++K Sbjct: 182 FSYSTLESRIRELAFLNSNIEIILRDLRNKPHVESHFNDSKESEDNFGTANFVRYLDKNK 241 Query: 241 KPLMQSPIRIQGSRD-NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + +D S++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR Sbjct: 242 THVTKIASIRDNVKDLGTSVEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRC 301 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES Sbjct: 302 INNYANNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESI 361 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D LS LE P A IV++ + ++ R+AAR+AR+L + K ++IA+LPGKLADC E Sbjct: 362 VFDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKNKNNINIATLPGKLADCQE 421 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVERA D++ SS EIG+LIT Sbjct: 422 KVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERAGLDRIFSSAEIGSLIT 481 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M +I G+LYI +P Sbjct: 482 AIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQP 541 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +T+ Y+KD+E+ E+Y++N ++ DLR ++ L I Sbjct: 542 PLYKVTKNAKDTYIKDDETFEEYIVNSAIKRLTLNGV-------GKDLRFVLNKCLSISN 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + K++ K +E +I ++ + A ++ L + SE +W + + Sbjct: 595 ISKNYDREIPKDLLESLLIL-------SKKNALLSADEILKYLKLM--YSEYNWEVEVKD 645 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +I + ++ +G+ +++V S + S + + I + + L +IKI P Sbjct: 646 EEIHIAKLFQGLADKYVFSLSMLESKEIRNILSSLDNIIDLFNGDSFLQSQETEIKIKSP 705 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L + G+KG+++QR+KGLGEMNA QLWETTLNP+TR+LL+V+I D +AD +FS Sbjct: 706 STLAKIVMDYGKKGLTLQRFKGLGEMNADQLWETTLNPETRTLLKVEIKDCEEADSIFSV 765 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI N+L +DI Sbjct: 766 LMGDIVEPRRDFINNNALNVHDVDI 790 >gi|322417549|ref|YP_004196772.1| DNA gyrase subunit B [Geobacter sp. M18] gi|320123936|gb|ADW11496.1| DNA gyrase, B subunit [Geobacter sp. M18] Length = 796 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 376/808 (46%), Positives = 531/808 (65%), Gaps = 17/808 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + + Y AD IQIL+GL+AV+KRP+MYIG T + GLHH++YE++DNAIDE+L GY Sbjct: 1 MSSE-EQNDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D + VT+++DG+ TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYKVSGGL Sbjct: 59 CDAVQVTIHLDGTVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNSSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L+L I+R G++Y S+ G+ PL +TG GT++TFLP + Sbjct: 119 HGVGSSVVNALSTRLELEIRRNGHLYTQSYRRGVPQAPLAITGETK-RRGTKITFLPDGE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++D L RLREL+FLN+ V+I + D+R+ + + FY+GGI +FV YL+++K Sbjct: 178 IFETTEFSFDILSKRLRELAFLNAGVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + PI I+G + + I++AM++ND Y E V F NNI +GGTHL G +++LTR + Sbjct: 236 NLVNPDPIYIKGEKGGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFKASLTRTM 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K K ++ G+D REG T+V+S+K+ P+F QTK KL +SEV+ VE+ + Sbjct: 296 NNYATANNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLM 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ +LEE+P A+ I++K +DA+ R+AAR+AR+LTRRKG L++ +LPGKLADC E+ Sbjct: 356 NEKLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+A Sbjct: 416 DPALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT IG++ FDI KLRYH+IIIMTDADVDG+HI TLLLTFFFRQM +I G+LYI +PP Sbjct: 476 LGTSIGKEDFDIAKLRYHRIIIMTDADVDGSHILTLLLTFFFRQMMEMIERGYLYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKID 598 LY I RG+ QY+K+E +L+ YL+ + + D + V + + + D Sbjct: 536 LYKIKRGRKEQYLKNEAALQSYLLEEGTEDMTLKLGIGDDERVYRGKQIIPILTQLIDYD 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 +L + + + E ++ L A+ + S + Sbjct: 596 ELFDKVVKKGINELLLRVFLKAGIKPGLEEMTDLIALLPKMKEAYPEVEAQPFDDSILFA 655 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 N + V + V E + E + + + + + ++ ++ + Sbjct: 656 FGNLRVRVDQQIFEVLESY--EYAMLLDNHKRVRSMMGAGSGAVLGPEDKVLLETERQE- 712 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L +KG+ +QRYKGLGEMN QLWETT++ + R LL+VKI DA A+++ Sbjct: 713 ----EILSFFLESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEI 768 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F+ LMGD+VEPRR+FI++N+L LD+ Sbjct: 769 FTVLMGDQVEPRRDFIEQNALNVSNLDV 796 >gi|256830858|ref|YP_003159586.1| DNA gyrase subunit B [Desulfomicrobium baculatum DSM 4028] gi|256580034|gb|ACU91170.1| DNA gyrase, B subunit [Desulfomicrobium baculatum DSM 4028] Length = 803 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 365/812 (44%), Positives = 513/812 (63%), Gaps = 18/812 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ S+Y AD+I +L+GL AV+ RP+MYIG T+ +GLHH++YEV+DN+IDE++ GY Sbjct: 1 MTQKT--STYTADNITVLEGLSAVRMRPAMYIGSTN-TNGLHHLVYEVIDNSIDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++MD S ++ DNGRGIP D+H +E A EV+MT LHAGGKF+ SYKVSGGL Sbjct: 58 CDHIKVVVHMDNSVSIVDNGRGIPVDMHPKEKKPALEVVMTVLHAGGKFDNDSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + R G+ + + G+ PL V G + TGT V F P D Sbjct: 118 HGVGVSVVNALSEYLEVTVSRGGHRHYQRYCRGVPQAPLAVIGET-DKTGTLVRFRPDED 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF DF YD L R EL++LN ++I D++S Y+GGI +FV +++ Sbjct: 177 IFEELDFQYDVLAKRFEELAYLNPGIKIEFFDEKS--QNRDVFKYEGGIISFVKN--KNQ 232 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + G + +SID A+++ GY ENV F NNI K+GGTHL G ++ALTR I Sbjct: 233 DNGIHKVVGGTGEMEGVSIDFALQYTAGYKENVFTFANNIRTKEGGTHLQGFKTALTRAI 292 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y++ S KK K+ V GDD REG T+++S+K+P+P+F QTK KL +SEV V + V Sbjct: 293 NTYIQNSDVPKKLKQKVSGDDVREGLTAIISVKIPNPQFEGQTKTKLGNSEVAGYVATMV 352 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ + E+P + ++I++KV+DA+ RDAARRA+DL RRKG L +LPGKLADC + Sbjct: 353 YEALNQFFGENPKDVRLIIEKVIDAARARDAARRAKDLVRRKGALSDNALPGKLADCQSK 412 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP + E+F+VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+ RFDKML ++EI LITA Sbjct: 413 DPAECEVFIVEGDSAGGSAKQGRNPKFQAILPLRGKILNVEKTRFDKMLQNKEIKALITA 472 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G GIGQD D+ +LRYHKI+IMTDADVDGAHIRTL+LTFFFR LI G+LYI +PP Sbjct: 473 MGAGIGQDDVDLARLRYHKIVIMTDADVDGAHIRTLILTFFFRHYEELIKQGYLYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +G +Y+KDE+ + +LI + E + D + ++ DLR ++ L + +L Sbjct: 533 LYRVHKGSFERYIKDEDEMSQFLIQRVTEEVALILPD-REPLTGEDLRELLNTILALREL 591 Query: 601 IKDFYPNHDKTFIEQAVISGV-------FNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 +D + V++ E + + L I+E+ E Sbjct: 592 AQDVANMGIPDGLFMRVVNAPGAIEPDELRANGPDEALTAHMAAGGFSLELISEQDEPQN 651 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL-SLICNGD 712 +++ R L +S + +I E + ++ Sbjct: 652 GEALDTEARHYLRFIDANNHVIRLGVEFFYSKRYRRAVELLGKIREFGSGQVWTIRHKDV 711 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +++ TGP LL + + +KGI++QRYKGLGEMN QLW TT++P+ R+ L+V I DA + Sbjct: 712 ELEATGPFDLLRQVLDLAQKGINVQRYKGLGEMNPEQLWSTTMDPEARTFLQVTIDDAVE 771 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+LF++LMGD+VEPRREFI+ N+L LDI Sbjct: 772 ADELFTKLMGDKVEPRREFIERNALLVSDLDI 803 >gi|58585021|ref|YP_198594.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419337|gb|AAW71352.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 792 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 401/805 (49%), Positives = 544/805 (67%), Gaps = 22/805 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y+AD+I+IL+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDESL GY D I V Sbjct: 2 ESNYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N DGS +V+DNGRGIPTD+HKEEGISAAEVIMT+LHAGGKF+ +YKVSGGLHGVG+S Sbjct: 62 SINEDGSVSVTDNGRGIPTDIHKEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSSWL+L I R + M F +G PL + N GT VTF+PS++ FS D Sbjct: 122 VVNALSSWLELTIWRNKKEHFMRFEDGESIEPLKIVNKNTNKRGTRVTFMPSTETFSSID 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG------GIEAFVSYLDRHK 240 F+Y TL++R+REL+FLNSS+ I+L D R+ E G FV YLD++K Sbjct: 182 FSYSTLENRIRELAFLNSSINITLRDLRNKPYIESHFNDSKQSKDNFGTANFVRYLDKNK 241 Query: 241 KPLMQ-SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + + ++ ISI+++M WND Y+E++LCFTNNI Q+DGGTHL+G RSALTR Sbjct: 242 THVTKITSMKGDAKDLGISIEISMEWNDSYYEHMLCFTNNIRQRDGGTHLAGFRSALTRC 301 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y KK K S+ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES Sbjct: 302 INNYATDEGFLKKAKVSLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARTVVESI 361 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D LS LE P A IV++V+ ++ R+AAR+AR+L + K +DI++LPGKLADC E Sbjct: 362 VFDKLSTILETDPKLAASIVERVIRSAKGREAARKARELVKNKNSIDISTLPGKLADCQE 421 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER D++ SS EIG+LIT Sbjct: 422 KVPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLIT 481 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M +I G+LYI +P Sbjct: 482 AIGAGIGSEHFDIEKTRYHKIIIMTDADVDGSHIRTLILTFFFRYMREVIERGYLYIAQP 541 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +T+ Y+KD+E+ E Y++N ++ + + LR + L I Sbjct: 542 PLYKVTKNAEDTYIKDDETFEKYIVNLAVKKLTLNS-------TGRGLRFILSKCLSISN 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + K++ + +E +I ++ +S A+++ L + + Sbjct: 595 ISKNYSRGIPQNLLESLLIL-------SKKNALSSANEILKYLKLMYSEYNWEVEIKDEE 647 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ + ++ +G+ +++V S + S + + + + + L +IKI P Sbjct: 648 REVHISKLFQGLADKYVFPLSMLDSKEIRNILSSLDDVIDLFNGDSFLKSQETEIKIRSP 707 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L + G+KG+++QR+KGLGEMNA QLW+TTLNP+TR+LL+V+I D +AD +FS Sbjct: 708 SALAKIVMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPETRTLLKVEIKDCEEADSIFSV 767 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI N+L +DI Sbjct: 768 LMGDIVEPRRNFINNNALNVYDVDI 792 >gi|58617165|ref|YP_196364.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel] gi|58416777|emb|CAI27890.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel] Length = 798 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 408/809 (50%), Positives = 548/809 (67%), Gaps = 27/809 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y+A SI +LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L G+ + I + Sbjct: 2 NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V DNGRGIP D+H++EGI AAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 62 IQNDGSVSVIDNGRGIPVDIHEDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSSWL+L I R G Y M F +GI PL V GT++TFLPS DIFS F Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFSFISF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG----------GIEAFVSYLD 237 NY TL++R+RELSFLNS++ I+L D R + + + KG G FV YLD Sbjct: 182 NYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKYLD 241 Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R+K P+ I I+G+ I+++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA Sbjct: 242 RNKNPVT-KVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+ Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ V + L+ E +P A ++++++ ++ R+AAR+ARD+ + K D LPGKLA Sbjct: 361 VENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA D++LSS EI Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEIA 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M +I G+LY Sbjct: 481 SLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +T+ K Y+K++E L DY+IN ++ + + L + + Sbjct: 541 IAQPPLYKVTQNKKELYIKNDEMLYDYIINNAVRNVTFIADKD---YVGDSLSKILHQCM 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +I K+ K + + +E +I ++ N + A +++N LN I E W Sbjct: 598 EISKITKSYNRIIPQNVLESLII-------FFKKHNFNSADEVSNHLNKIFCDYE--WSV 648 Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 I D I + R++ G+ +++ L+ + S + N IEE + I L + + Sbjct: 649 EIPEKDNITIFRLSHGLVDKYYLDNKIMNSEDIQRVINMCNNIEEAFSDIPILSTKDNNV 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 KI P SL+D I G+K +++QR+KGLGEMNA QLW+TTLNPDTR+LL++KI+D AD Sbjct: 709 KIDSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISDCEAAD 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +FS LMGD VEPRR+FI N+L +D Sbjct: 769 SIFSILMGDFVEPRRDFINNNALNVQNID 797 >gi|57239156|ref|YP_180292.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58579107|ref|YP_197319.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|57161235|emb|CAH58151.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden] gi|58417733|emb|CAI26937.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden] Length = 798 Score = 837 bits (2163), Expect = 0.0, Method: Composition-based stats. Identities = 407/809 (50%), Positives = 548/809 (67%), Gaps = 27/809 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y+A SI +LKGLDAV+KRP MYIGDTD SGLHHM+YEV+DN+IDE+L G+ + I + Sbjct: 2 NDYNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDII 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V DNGRGIP D+H++EGI AAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 62 IQNDGSVSVIDNGRGIPVDIHEDEGIPAAEVIMTQLHAGGKFDHSSYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSSWL+L I R G Y M F +GI PL V GT++TFLPS DIFS F Sbjct: 122 VNALSSWLELTIWRNGKEYFMRFEDGITVTPLSVVAENTTKKGTKITFLPSKDIFSFISF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG----------GIEAFVSYLD 237 NY TL++R+RELSFLNS++ I+L D R + + + KG G FV YLD Sbjct: 182 NYSTLENRIRELSFLNSNININLKDLRDNQISDSSFGIKGHIKTSAIEDRGTSGFVKYLD 241 Query: 238 RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 R+K P+ I I+G+ I+++L+M WND Y+EN+LCFTNNI Q+DGGTHL+G RSA Sbjct: 242 RNKNPVT-KVIHIEGNIPESGINVELSMHWNDSYYENMLCFTNNIRQRDGGTHLAGFRSA 300 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y KK K S++G+D REG T VLSIK+PDP+FSSQTK+KLVSSE R+ Sbjct: 301 MTRCINNYATNEGFLKKAKVSILGEDVREGLTCVLSIKLPDPKFSSQTKDKLVSSEARTA 360 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ V + L+ E +P A ++++++ ++ R+AAR+ARD+ + K D LPGKLA Sbjct: 361 VENIVYEKLTNIFETNPKLASSVIERIIRSAKGREAARKARDIIKNKNGFDFTILPGKLA 420 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+ P+ SELF+VEG+SAGGSAKQGR R +QA+L L+GKILNVERA D++LSS EI Sbjct: 421 DCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILSSSEIA 480 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +LITA+G+ IG ++FDI K+RYHK+IIMTDADVDG+HIRTLLLTFFFR M +I G+LY Sbjct: 481 SLITAVGSNIGVENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREIIEKGYLY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY +T+ K Y+K++E L +Y+IN ++ + + L + + Sbjct: 541 IAQPPLYKVTQNKKELYIKNDEMLYNYIINNAVRNVTFIADKD---YVGDSLSKILHQCM 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +I K+ K + + +E +I ++ N + A +++N LN I E W Sbjct: 598 EISKITKSYNRIIPQNVLESLII-------FFKKHNFNSADEVSNHLNKIFCDYE--WSV 648 Query: 656 SINNSD-ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 I D I + R++ G+ +++ L+ + S + N IEE + I L + + Sbjct: 649 EIPEKDNITIFRLSHGLVDKYYLDNKIMNSEDIQRVINMCNNIEEAFSDIPILSTKDNNV 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 KI P SL+D I G+K +++QR+KGLGEMNA QLW+TTLNPDTR+LL++KI+D AD Sbjct: 709 KIDSPTSLVDNIIEFGKKDMTLQRFKGLGEMNADQLWDTTLNPDTRTLLKIKISDCEAAD 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +FS LMGD VEPRR+FI N+L +D Sbjct: 769 SIFSILMGDFVEPRRDFINNNALNVQNID 797 >gi|332531211|ref|ZP_08407124.1| DNA gyrase subunit B [Hylemonella gracilis ATCC 19624] gi|332039318|gb|EGI75731.1| DNA gyrase subunit B [Hylemonella gracilis ATCC 19624] Length = 849 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 390/853 (45%), Positives = 530/853 (62%), Gaps = 54/853 (6%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ + YD SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE Sbjct: 1 MSEAEKPVGAGAGGYDESSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFN 110 +L GY D I VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFN Sbjct: 61 ALAGYCDDIVVTIHTDNSISVTDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFN 119 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158 Q SYKVSGGLHGVGVS VNALS WL+L ++ G ++++ F G + +P Sbjct: 120 QNSYKVSGGLHGVGVSCVNALSRWLRLTVRNGGKVHQLEFARGAVQSRLLTQQSGVDVSP 179 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217 + V G GTEV FLP ++IF F+Y+ L RLRELSFLN+ V+I L D+R+ + Sbjct: 180 MKVIGETE-KRGTEVHFLPDTEIFQQNHEFHYEILAKRLRELSFLNNGVRIRLKDERNGK 238 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWND 267 GG++ FV +++ +KK L + G+R I +++AM+WND Sbjct: 239 E--DDFSGAGGVKGFVDFINANKKVLHPNAFHAIGTRPADSYGGIPGTEIGVEVAMQWND 296 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 GY+E+VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+E + +KK K V GDD REG Sbjct: 297 GYNESVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIESNELAKKAKVEVTGDDMREGLC 356 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 VLS+K+P+P+FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AK + K+++A+ Sbjct: 357 CVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKALNDYLEERPNDAKTLCGKIVEAAR 416 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R+AAR+AR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ Sbjct: 417 AREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPSLCEIYIVEGDSAGGSAKQGRDRKF 476 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRY 497 QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+ D F+I+KLRY Sbjct: 477 QAILPLRGKILNVEKARYEKLLTSNEIVTLITALGTGIGKASSDSGKSGADDFNIDKLRY 536 Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557 H+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD Sbjct: 537 HRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELYLKDGS 596 Query: 558 SLEDYLINQSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 +L+ YL+ +L+ + VI+ + L + +I + D + Sbjct: 597 ALDAYLLRIALAGAAIHTGGVTNTVINGDTLAELARKHQLAESVIARLHNFMDVEALRAV 656 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIA-EKSEKSWHGSINNSDILVKRIARGVQEQF 675 ++ E VS + A + + + + + + R G + Sbjct: 657 ADGVELKLDTVAEAEVSAVALQAKLRELGSGSEVAGEFDVRTDKPILRISRRHHGNVKSS 716 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGR 731 V+ + + ++ + K+ S + + S Sbjct: 717 VITQDFVHGADYAALAEAAQTFRGLLGEGAKVVRGEGEKQKEEKVADFRSAMAWLISEAE 776 Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 + S QRYKGLGEMN QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEPRR+F Sbjct: 777 RTTSRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDF 836 Query: 792 IQENSLPS-ALDI 803 I+ N+L + +D+ Sbjct: 837 IETNALRAGNIDV 849 >gi|311087503|gb|ADP67582.1| DNA gyrase subunit B [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 803 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 375/807 (46%), Positives = 544/807 (67%), Gaps = 15/807 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + YD+ +I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L GY I V Sbjct: 2 KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+ SY++SGGLHGVG+S Sbjct: 62 TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I + Y+ + +G +NPL + G + TGT + F PS F + Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIG-TTDATGTYIRFWPSYKTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS++ I L + + + YKGGI+AF+ +L+ K P+ Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR + ++E Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G+ +Y+K++E + Y I +L + + D+ + K I + I Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQTIMKQS 598 Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657 ++ + + + + D EI LA LN + +K+ +I Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I + R A ++ + + S ++ + + + +G KI Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 + + ++G+ +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMG+ VEPRR+FI+ N+L + +D+ Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803 >gi|171056695|ref|YP_001789044.1| DNA gyrase subunit B [Leptothrix cholodnii SP-6] gi|170774140|gb|ACB32279.1| DNA gyrase, B subunit [Leptothrix cholodnii SP-6] Length = 864 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 388/830 (46%), Positives = 526/830 (63%), Gaps = 36/830 (4%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +++Y +DSIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 39 ASAAYGSDSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDII 98 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 99 VTIHTDNSISVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 157 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGND 168 HGVGVS VN LS+WL+L ++R+G + M F GI +P+ V G + Sbjct: 158 HGVGVSCVNGLSTWLRLTVRRDGRAHFMEFRQGIPQDRVLERRDGFEVSPMKVIGET-DK 216 Query: 169 TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP IFS DF+Y+ L RLRELSFLN+ V+I L+D+R+ + Y GG Sbjct: 217 RGTEVHFLPDHTIFSNIDFHYEILSKRLRELSFLNNGVKIRLVDERNNKE--DNFAYAGG 274 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283 ++ FV ++++ KK L + +G + N+ +++AM+WN+ Y+ENVLCFTNNIPQ+ Sbjct: 275 VKGFVEFVNKGKKVLHGNIFHARGDKMSDNQTNVGVEVAMQWNESYNENVLCFTNNIPQR 334 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+GLR+A+TR I Y++ + +KK K + GDD REG V+S+K+P+P+FSSQT Sbjct: 335 DGGTHLTGLRAAMTRVINKYIDDNDIAKKAKVEITGDDMREGLACVVSVKVPEPKFSSQT 394 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR+ VE V+ L+ WL E+P +AK I K++DA+ RDAAR+AR++TRRKG Sbjct: 395 KDKLVSSEVRAPVEDIVSRLLTDWLLENPTDAKTICSKIVDAARARDAARKAREMTRRKG 454 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 VLD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A Sbjct: 455 VLDGMGLPGKLADCQEKDPSLCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKA 514 Query: 464 RFDKMLSSQEIGTLITAL----GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 R++K+L+S EI TLITAL G G+G D F+ +KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 515 RYEKLLTSNEILTLITALGTGIGKGMGGDDFNPDKLRYHRIIIMTDADVDGAHIRTLLLT 574 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFFRQMP L+ G +YI +PPLY + GK QY+KD L+ YL+ ++ K Sbjct: 575 FFFRQMPDLVERGNIYIAQPPLYKVKHGKHEQYLKDGSELDAYLLKVAIDGATVEPGAGK 634 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 I+ L ++ +I D + + + Q+ S + Sbjct: 635 PAITGAALEELARQYVQASNVIARLSNWMDIEALRAISDGLTLDLDDAQKAEASAVALAG 694 Query: 640 NRLNFIAE-KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 L + + + + + + R G + V+ + + + Sbjct: 695 ALLAVGSSAEVAAEYDARTDKHHLRISRRHHGNIKSSVITQDFVHGADYEALSRAGITFK 754 Query: 699 ENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754 ++ GDK K + + + QRYKGLGEMN QLWETT Sbjct: 755 GLLADDATVKRGEGDKQKTAKAGDFRVAMAWLMQQAESSVGRQRYKGLGEMNPGQLWETT 814 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 ++P R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + +D+ Sbjct: 815 MDPTVRRLLRVQIEDAIEADKVFTMLMGDEVEPRRDFIESNALRAANIDV 864 >gi|121607007|ref|YP_994814.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2] gi|121551647|gb|ABM55796.1| DNA gyrase subunit B [Verminephrobacter eiseniae EF01-2] Length = 868 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 385/843 (45%), Positives = 523/843 (62%), Gaps = 49/843 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + SYDA +I IL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 30 ASESYDAGAITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 89 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V+DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 90 VTIHTDNSISVTDNGRGIPTGVKFDDKH-EPRRSAAEIALTELHAGGKFNQNSYKVSGGL 148 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168 HGVGVS VNALS WL+L ++REG ++++ F G + +P+ + G A Sbjct: 149 HGVGVSCVNALSKWLRLTVRREGRVHQLEFARGFVQDRLLDTVDGVAVSPMKLAG-ATEK 207 Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV FLP ++IF F+Y+ L RLRELSFLN+ V+I L D+RS + G Sbjct: 208 RGTEVHFLPDAEIFKENRDFHYEILAKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 265 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLCFT 277 G+ FV ++++ K L + G R +I +++AM+WN Y E VLCFT Sbjct: 266 GVRGFVEFINKGKTALHPNSFYATGERPAETYGGIPGTHIGVEVAMQWNSAYAEQVLCFT 325 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 NNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P+P Sbjct: 326 NNIPQRDGGTHLTGLRAAMTRVINKYIEETEMAKKAKVEVTGDDMREGLCCVLSVKLPEP 385 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 +FSSQTK+KLVSSEVR+ VE V L+ +L+E P +AKII K++DA+ R+AAR+AR+ Sbjct: 386 KFSSQTKDKLVSSEVRAPVEDIVGKLLADYLQEKPADAKIICSKIVDAARAREAARKARE 445 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 +TRRKG LD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKI Sbjct: 446 MTRRKGALDGLGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKI 505 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDG 510 LNVE+AR++K+L+S I TLITALGTGIG+ D FD KLRYH+IIIMTDADVDG Sbjct: 506 LNVEKARYEKLLTSDAILTLITALGTGIGKAGGSAGGDDFDAAKLRYHRIIIMTDADVDG 565 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD+ +L+++L+ +L++ Sbjct: 566 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDDPALDNFLLRIALNQ 625 Query: 571 E-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 + + V+S L + +I D + S + Sbjct: 626 ASVLTGNADQAVLSGATLTELARKHQSAESVIARLSHFMDAEALRAMADGVRLRLGSLAD 685 Query: 630 INVSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 S + A L+ +E + + + + R G + + + Sbjct: 686 AQASAVALQAKLRELHTTGAPAEVTGEFDARTDKPLLRISRRHHGNIKSSAITQDFVHGA 745 Query: 686 GSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 + + + KI+ + + S + + QRYKG Sbjct: 746 DYAALAEAAETFRGLLGANAKAMRGEAEKQKEEKISDFRQAMKWLISEAERTTTRQRYKG 805 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEPRR+FI+ N+L + Sbjct: 806 LGEMNPEQLWETTMDPSVRRLLRVQIDDAIEADRVFTMLMGDEVEPRRDFIEMNALRAGN 865 Query: 801 LDI 803 +D+ Sbjct: 866 IDV 868 >gi|42520018|ref|NP_965933.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409755|gb|AAS13867.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 795 Score = 836 bits (2159), Expect = 0.0, Method: Composition-based stats. Identities = 393/805 (48%), Positives = 536/805 (66%), Gaps = 19/805 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SY+AD+I+IL+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDESL GY D I V Sbjct: 2 ENSYNADAIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDESLAGYCDKIEV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N DGS +V+DNGRGIPTD+H+EEGISAAEVIMT+LHAGGKF+ +YKVSGGLHGVG+S Sbjct: 62 SINKDGSVSVTDNGRGIPTDIHEEEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSSWL+L I R + M F +G PL V N GT+VTF+PS++ F+ + Sbjct: 122 VVNALSSWLELIIWRNKKEHFMRFEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGIN 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKK 241 F+Y TL+ R+REL+FLNS++ I+L D R+ E + K Sbjct: 182 FSYSTLESRIRELAFLNSNIDITLRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNK 241 Query: 242 PLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + ++G IS++++M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALTR Sbjct: 242 THVTKIASMKGDAEDLGISLEISMEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTRC 301 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y KK K ++ G+D REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES Sbjct: 302 INTYATNEGFLKKAKVNLTGEDVREGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESI 361 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+D LS LE P A IV++ + ++ R+AAR+AR+L + K +DIA+LPGKLADC E Sbjct: 362 VSDKLSTILETDPKLAASIVERAIRSAKGREAARKARELVKSKNNIDIATLPGKLADCQE 421 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P+ SELF+VEG+SAGG+AKQGR+R+ QA+L LRGKILNVER D++ SS EIG+LIT Sbjct: 422 KAPELSELFIVEGNSAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLIT 481 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG + FDI K RYHKIIIMTDADVDG+HIRTL+LTFFFR M +I G+LYI +P Sbjct: 482 AIGAGIGSEHFDIEKARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQP 541 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +T+ Y+KD+E+ E+Y+IN ++ S N+LR ++ + Sbjct: 542 PLYKVTKNAKDTYIKDDETFEEYIINSAVKRLTL----SGTATEFNNLRLILNKCVSTSN 597 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + K++ + +E +I ++ +S A ++ L + + Sbjct: 598 ISKNYDREIPQNLLESLLIL-------SKKNALSSADEILKYLKLMYSEYTWEVEIKDEE 650 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +I + ++ +G+ ++++ S + + + I + L +I+IT P Sbjct: 651 KEIHISKLFQGLADKYIFALSMLEGKDMQNILSLLDGISNLFNGDSFLKSQETEIRITSP 710 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L I G+KG+++QR+KGLGEMNA QLW+TTLNP+ R+LL+V+I D +AD +FS Sbjct: 711 STLAKIIMDYGKKGLTLQRFKGLGEMNADQLWDTTLNPEARTLLKVEIKDCEEADSIFSI 770 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI N+L +DI Sbjct: 771 LMGDIVEPRRDFINSNALNVHDVDI 795 >gi|89898825|ref|YP_521296.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118] gi|89343562|gb|ABD67765.1| DNA gyrase subunit B [Rhodoferax ferrireducens T118] Length = 870 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 392/834 (47%), Positives = 524/834 (62%), Gaps = 43/834 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDESL G+ D I Sbjct: 44 ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDIL 103 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 104 VTIHSDNSVSVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 162 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168 HGVGVS VNALS L+L I+R+G ++ M F G + +P+ V G Sbjct: 163 HGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRVTEVVNGVEVSPMKVIG-TTEK 221 Query: 169 TGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV FLP S+IF DF+Y+ L RLRELSFLN+ V+I L D+RS + G Sbjct: 222 RGTEVHFLPDSEIFQQNSDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSGAG 279 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQ 282 G+ FV+++++ K L + G R NI +++AM+WN GY+E VLCFTNNIPQ Sbjct: 280 GVRGFVNFINKGKTVLNPNIFHALGDRQSDQDTNIGVEVAMQWNSGYNEQVLCFTNNIPQ 339 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +DGGTHL+GLR+A+TR I Y++ S +KK K V GDD REG T VLS+K+P+P+FSSQ Sbjct: 340 RDGGTHLTGLRAAMTRVINKYIDDSELAKKAKVEVTGDDMREGLTCVLSVKVPEPKFSSQ 399 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK+KLVSSEVR VE V+ L +L+E P +AKIIV K+++A+ R+AAR+ARD+TRRK Sbjct: 400 TKDKLVSSEVRGPVEDIVSKLLYDYLQERPADAKIIVGKIIEAARAREAARKARDMTRRK 459 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 GVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+ Sbjct: 460 GVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 519 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQ-------DSFDINKLRYHKIIIMTDADVDGAHIRT 515 AR++K+L+S EI TLITALGTGIG D F++ KLRYH+IIIMTDADVDGAHI T Sbjct: 520 ARYEKLLTSNEILTLITALGTGIGNAGGSTGSDDFNVAKLRYHRIIIMTDADVDGAHICT 579 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD + L+ +L+ +L Sbjct: 580 LLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEELYLKDGDELDRFLLRIALVNASVFT 639 Query: 576 -CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 ++ + L +I D + N ++ + +S Sbjct: 640 GGENGTTLKGETLAELARKHQTTQAVIARLRNFLDAEALRSVADGVALNLDTVADAEISA 699 Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 A+ L RL E + + + + + R G + VL + + Sbjct: 700 AA-LQARLPDAEVAGE--FDVASDKPILRISRRHHGNIKSSVLTQDFVHGADYAVLADAA 756 Query: 695 NRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 + ++ ++ + K++ + + + S QRYKGLGEMN +QL Sbjct: 757 STFKDLLSPGAIVMRGEGERQKEEKVSDFRQAMTWLLAQAEHATSRQRYKGLGEMNPAQL 816 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT++P R LLRV+I DA + D +F+ LMGDEVEPRREFI+ N+L + +D+ Sbjct: 817 WETTMDPTVRRLLRVQIDDAIETDRVFTMLMGDEVEPRREFIEANALRAGNIDV 870 >gi|212703755|ref|ZP_03311883.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098] gi|212672723|gb|EEB33206.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC 29098] Length = 799 Score = 834 bits (2154), Expect = 0.0, Method: Composition-based stats. Identities = 369/809 (45%), Positives = 508/809 (62%), Gaps = 16/809 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ ++ + SYDA SI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MAPDMAS-SYDASSITILEGLSAVRKRPAMYIGSTD-VRGLHHLVYEVVDNSIDEAMAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+ SYKVSGGL Sbjct: 59 CTRITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNNSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS WL + ++R+G Y + G+ + L V G A + GT V F P Sbjct: 119 HGVGVSCVNALSEWLTVTVRRDGKRYRQHYSRGVPQDQLTVIGEA-DGHGTTVRFQPDEQ 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF V +F+YDTL+ R EL++LN + I ID+R+ E +GGI FVS L+ + Sbjct: 178 IFEVLEFSYDTLKKRFEELAYLNKGLYIECIDERTSETH--VFHAEGGIRQFVSDLNSGQ 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I +G DN++ID A+++N GY E +L F NNI K+GGTHL G R+ALTR I Sbjct: 236 QGIHP-IIMAEGVVDNVAIDFALQYNAGYKETILTFANNIHTKEGGTHLVGFRTALTRAI 294 Query: 301 TSYVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 YV+ K ++ GDD REG T+V+S+K+P P+F QTK KL +SEV +V Sbjct: 295 NGYVKNQPDLTKKLKGTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGMVAG 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D L+ + EE+P + ++I+ K +DA+ RDAARRA++L RRKG L SLPGKLADC Sbjct: 355 MVYDRLTVYFEENPKDIRLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP +SELF+VEGDSAGGSAKQGR+ NQAILPLRGKILN ER RFDKML+++E+ LI Sbjct: 415 SKDPAESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKALI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG++ D++KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ ++ G++YI + Sbjct: 475 TAMGAGIGEEDTDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGYVYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + + +++KD+ L ++L+N+ +SE++ + + + DL ++ KI+ Sbjct: 535 PPLYRVHNARMEKFIKDDAELNEFLLNR-VSEDVTVVAANGREYTGRDLIRLMETIEKIE 593 Query: 599 KLIKDFYPNHDKT--FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + D F+ A + + + S L ++ + E H Sbjct: 594 LRVADAESTGMPRPLFLALATYPRAVDRALLEARDADFLSWLEKHEYALSLERE---HSE 650 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK 715 + + S + ++F++ E+ SL + Sbjct: 651 DEDEGRVFAVFENTGSHHTRRGMEFFASRLYRQTWQLFNDLREQCGELSFSLRRKDSSSQ 710 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L+ RKGI++QRYKGLGEMN QLW TT+NP+ R LL+V + DA++A D Sbjct: 711 AGDVFDLMQMTLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRVLLQVSVEDANEASD 770 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD VEPRREFI+ N+L LDI Sbjct: 771 AFEELMGDRVEPRREFIERNALSVQDLDI 799 >gi|313671974|ref|YP_004050085.1| DNA gyrase subunit b [Calditerrivibrio nitroreducens DSM 19672] gi|312938730|gb|ADR17922.1| DNA gyrase subunit B [Calditerrivibrio nitroreducens DSM 19672] Length = 796 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 359/812 (44%), Positives = 509/812 (62%), Gaps = 25/812 (3%) Query: 1 MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ N +SY +SI++L+GL+AV++RP MYIG D GLHH++YEV+DN+IDE++ Sbjct: 1 MSEILNNSENSYSEESIKVLEGLEAVRQRPGMYIGSID-VKGLHHLVYEVVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I VTL++DGS TV D+GRGIP +H EV+MT LHAGGKFN +Y SG Sbjct: 60 GYCKNIFVTLHVDGSVTVEDDGRGIPVGIHPTAKKPTVEVVMTTLHAGGKFNSGAYFASG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS +L++ +KR+G +Y + GI G + TGT+V F P Sbjct: 120 GLHGVGVSVVNALSEYLEVTVKRDGKVYFQRYERGIPVTEFKEIGKT-DKTGTKVRFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 S+IF +F++D+L R REL+FLNS ++I +D+ S + + GGI +++ +L++ Sbjct: 179 SEIFETTEFHFDSLAKRFRELAFLNSGIRIKAVDEASEKVHDFCF--DGGIVSYIKFLNK 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L PI + G +N+ ++ A+ +N + E ++ F NNI ++GGTH +G +S+ T+ Sbjct: 237 GKELLFDDPIYVSGKYENVVVECAILYNTSFDEKIISFVNNIHTEEGGTHEAGFKSSFTK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 +++ K KDK S+ GDD REG ++++SIK+ +P F QTK KL SS + VES Sbjct: 297 AFNNFINKYN-LLKDKISLEGDDVREGMSAIVSIKLNEPMFEGQTKSKLGSSIGKVAVES 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + L + EE+ + K I+ K + A R+AAR+A++LTRRK LDI++LPGKLADC Sbjct: 356 VLGSFLPDFFEENSVVVKKILDKAVQAYRAREAARKAKELTRRKNALDISTLPGKLADCQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SE+F+VEGDSAGGSAKQ R R QAILPL+GKILNVE+AR+DK+LS+ EI T+I Sbjct: 416 EKDPALSEIFIVEGDSAGGSAKQCRDRRFQAILPLKGKILNVEKARYDKLLSNNEIKTII 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG++ FD+NKLRYHKIIIMTDADVDGAHI TLLLTFFFR M +I GFLYI + Sbjct: 476 TALGCGIGKEDFDLNKLRYHKIIIMTDADVDGAHISTLLLTFFFRYMRPIIERGFLYIAR 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY I + K +Y+ +EE ED++++ L IS+ R I + ++ Sbjct: 536 PPLYKIKKNKVERYIHNEEEFEDFILDMGLDGVSI------PEISEIRYREIIRNLFVMN 589 Query: 599 KLIKDFYPN-HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE-----KSEKS 652 KLI + + + I E E S L N L+ Sbjct: 590 KLISKYEKKGYLEKLILNIATHQNLEPEYLSE--KSYVEDLMNMLDQKGAFEGYHSHFID 647 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ N +I + V + + + + K + + + E + ++ +G+ Sbjct: 648 FNEEYNRYNIFFSSSSGSV---YAINTDFLTTPEFKEIKRLARFLNEIGGVPIKILVDGE 704 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 ++ L++ I S G+KG+++QRYKGLGEMN QLWETT++P+ R L RV I DA + Sbjct: 705 ELYFDKVSELVNFIESRGKKGLTIQRYKGLGEMNPEQLWETTVDPERRVLYRVTIEDAEE 764 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD LFS LMGD V PRREFI+EN+L + +DI Sbjct: 765 ADGLFSLLMGDVVAPRREFIEENALYAKNIDI 796 >gi|85857848|ref|YP_460050.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB] gi|85720939|gb|ABC75882.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB] Length = 800 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 390/811 (48%), Positives = 546/811 (67%), Gaps = 19/811 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+DN Y ADSI+IL+GL+AV+ RP+MYIG E GLHH++YEV+DN+IDE+ GY Sbjct: 1 MTDN-----YSADSIKILEGLEAVRVRPAMYIGSIGKE-GLHHLVYEVVDNSIDEASAGY 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV + +D S V DNGRGIP D+H E G+SAAEV+MT+LHAGGKF+ SYK+SGGL Sbjct: 55 CDKITVKIRVDNSIMVEDNGRGIPVDMH-ETGVSAAEVVMTKLHAGGKFSNDSYKISGGL 113 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS ++L ++R+G +Y S++ G+ PL VTG GT++ F P Sbjct: 114 HGVGVSVVNALSSSMELNVRRDGKVYSQSYVRGVPTAPLAVTGQTS-GRGTKIYFKPDDT 172 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +FN+D L +RLREL+FLNS V+I+LID RS R+ FY+GGI +FV Y++R+K Sbjct: 173 IFEELEFNFDILANRLRELAFLNSGVRIALIDDRSD--RKSEFFYEGGIISFVEYINRNK 230 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 K L + PI + G R++ ++++A+++ND Y EN+ F N+I +GGTHLSG RSALTR Sbjct: 231 KVLHKDPIYVSGEREDSTVEVALQYNDTYTENIFSFANSINTTEGGTHLSGFRSALTRVF 290 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K K S+ G+D REG V+S+K+ +P+F QTK KL +SEVR +VE V Sbjct: 291 NNYAVNNGLLKNGKESLRGEDLREGLACVISVKVQNPQFEGQTKTKLGNSEVRGLVEGIV 350 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + ++LEE+P AK ++ K L+AS R+AARRAR+LTRRK L++ +LPGKLADC ER Sbjct: 351 YEKIGSYLEENPSVAKQLLNKCLEASRAREAARRARELTRRKSALEVGALPGKLADCQER 410 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SEL+LVEGDSAGGSAKQGR R NQAILPLRGK+LNVE+ARFDKML ++EI T+ITA Sbjct: 411 DPARSELYLVEGDSAGGSAKQGRDRRNQAILPLRGKVLNVEKARFDKMLQNEEIKTMITA 470 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIGQ+ +D++++RYHK+IIMTDADVDG+HIRTLLLTFFFRQM L+ G+LYI +PP Sbjct: 471 LGTGIGQEDYDVSRIRYHKVIIMTDADVDGSHIRTLLLTFFFRQMRELVEKGYLYIAQPP 530 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 L+ IT K+ Y+++EE + ++++ + I+LF + ++ N L N + ++++ + Sbjct: 531 LFKITEKKNEVYIRNEEEMNNFILQNGVKR-IKLFNGREEAVTGNQLLNLVKKVMRVETI 589 Query: 601 IKDFYPNH-DKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSWHGSI 657 + F D+ I F + + +A + A L ++ Sbjct: 590 LDKFEKEDCDRKIILALAERPSFTIQDFDDEALLKEVARQTAQALGEEVREAGVEADEEH 649 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC----NGDK 713 + G ++ S + + +I S++ D+ Sbjct: 650 GGYKLFFFLQNNGKVQRISFGKSIYRAPKFSEVKAILEQISSVGKPPYSVMAIDGDGTDR 709 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 +I SL+ + S+G+KG+S+QRYKGLGEMN QLWETT+NP+ R+LL+V++ DA QA Sbjct: 710 QEIPDMSSLVQFVNSVGKKGLSVQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVDDAVQA 769 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD+VEPRREFI +N+L LD+ Sbjct: 770 DEIFTTLMGDQVEPRREFIYQNALYVSNLDV 800 >gi|215433471|gb|ACJ66701.1| GyrB [Myxococcus fulvus HW-1] Length = 815 Score = 831 bits (2148), Expect = 0.0, Method: Composition-based stats. Identities = 367/805 (45%), Positives = 510/805 (63%), Gaps = 16/805 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y DSI L+G +AV+KRP MYIGDT GLH ++YEV+DNA+DESL G+ I V + Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDTVA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75 Query: 69 NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++DGS +V DNGRGIP H + G EV++T LHAG KF +YKVSGGLHGVGV+ Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VN LS W K+R++R G +YE S+ GI D+P G + GT + F P + + + +F Sbjct: 136 VNFLSEWFKVRVQRNGVVYEQSYAQGIPDSPPREVG-TTDKRGTHIAFKPDATVMELVEF 194 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 N++TL RLREL+FLN+ + I++ D+R+ + + + GGI +FV YL++ K+ L P Sbjct: 195 NFETLSQRLRELAFLNAGLHITIRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I R+ +++D+AM+WNDGY E + F NNI +GG+HLSG ++ALTR + SY EK Sbjct: 253 IAFSTEREGVTLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K K + G+D REG ++V+S+K+ +P+F QTK KL +SEV+ +VE VND L ++ Sbjct: 313 NLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE P+ AK +V K+ DA R AAR+AR+ RRKGVLD LPGKLADC RDP +SEL Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPNESEL 432 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIGA 492 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + +D K RYH+II+MTDADVDG+HIRTLLLTFFFRQMP L+ G+LYI +PPLY +TR Sbjct: 493 EDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFRQMPELLQKGYLYIAQPPLYKVTRN 552 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K QYVKDE +L +YL+ + L D + + +L+ ++ + ++ ++ Sbjct: 553 KKDQYVKDEHALNEYLLKSASEHARVLTPDGE--LGGAELKALLEKVITYEERLEKQAKR 610 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSINN 659 D ++ V G + E+ + A+ A F + E + Sbjct: 611 RDARVVDALVQGGRLSAETLTDEAALEAAVKAAYDTFERRMPDVLGRGRHELVQDPEHHT 670 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ G + VL+ + + S + + +I + Sbjct: 671 KKLVFHTDVNGAMRETVLDHAFLSSPEYVELSALRDAFAALGKPPYKVRVEAGEITVFSV 730 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L + ++G+ +QRYKGLGEMN QLW+TT+NP TR+LL+V++ DA ++D++FS Sbjct: 731 QEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESDEIFSL 790 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMG+ VEPRREFI+ N+L LDI Sbjct: 791 LMGEAVEPRREFIERNALDVQNLDI 815 >gi|313199780|ref|YP_004038438.1| DNA gyrase subunit B [Methylovorus sp. MP688] gi|312439096|gb|ADQ83202.1| DNA gyrase, B subunit [Methylovorus sp. MP688] Length = 762 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 369/765 (48%), Positives = 505/765 (66%), Gaps = 8/765 (1%) Query: 44 MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE----GISAAEVI 99 M++EVLDNAIDE+L G+ D I V ++ D S +VSDNGRGIPTD+ ++ SAAE++ Sbjct: 1 MVFEVLDNAIDEALAGHCDDIKVIIHPDNSVSVSDNGRGIPTDIKHDDIKAVKRSAAEIV 60 Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159 MT LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL+I R G +++M F G PL Sbjct: 61 MTELHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLKLKIYRNGQVHQMEFRRGEAVAPL 120 Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 +TG GTEV FL S + F + +F+++ L R+RELSFLN+ V+I LID+R+ + Sbjct: 121 AITG-TTERKGTEVHFLASIETFGLVEFHFEILAKRIRELSFLNNGVKIELIDQRNGKS- 178 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 + GG+ FV Y++R K L P G +D ++I+++M+WND Y E V CFTNN Sbjct: 179 -ENFAHSGGVRGFVEYMNRSKTVLHPKPFYAVGEKDGMTIEVSMQWNDSYAETVQCFTNN 237 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHL+GLR+A+TR + +Y+E++ +KK K GDD REG T VLS+K+P+P+F Sbjct: 238 IPQRDGGTHLTGLRTAMTRTLNNYIEQNELAKKAKIETTGDDMREGLTCVLSVKVPEPKF 297 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVS EV+ VV+ V L+ +L E+P++AK+I K++DA+ RDAAR+AR++T Sbjct: 298 SSQTKDKLVSGEVQPVVQEVVAAKLAEFLLENPVDAKVICNKIIDAARARDAARKAREMT 357 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKG +D LPGKLADC ERDP K EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILN Sbjct: 358 RRKGAMDTMGLPGKLADCQERDPTKCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILN 417 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+ARFDK+LSSQEI TLITA+GTGIG+D F +KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 418 VEKARFDKLLSSQEIATLITAMGTGIGKDDFSADKLRYHRIIIMTDADVDGAHIRTLLLT 477 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FF+RQM L+ G +YI +PPLY + +GK +Y+KD++ L+ YL+ SL L + Sbjct: 478 FFYRQMTQLVERGHIYIAQPPLYKVKQGKDERYLKDQQELDQYLLQSSLKGAELLTREGG 537 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 ++ L + + +I+ +D++ + + ++A KL Sbjct: 538 ETLAGEQLAEIAKQMVLTEAVIRRLASLYDESVLRALQNVEGTVELDTEANANAVAEKLR 597 Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 L + + + V + G + V++ + S + S ++ Sbjct: 598 PLLGHTGSEVIVAQDLETGTYRLEVNKYVHGNLQSCVVDTDFLASGDYRQISKMSVMLQG 657 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 S+ ++ + LD + + +++QRYKGLGEMN QLWETT++P Sbjct: 658 LLGEGASIKRGEKSQPVSNFKAALDWLLEEAKHNLNIQRYKGLGEMNPEQLWETTMDPTV 717 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LL+V+I DA AD++F+ LMGD+VEPRR FI+ N+L LDI Sbjct: 718 RRLLKVQIDDAIAADEIFTTLMGDQVEPRRAFIESNALGVNNLDI 762 >gi|295698376|ref|YP_003603031.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA] gi|291157393|gb|ADD79838.1| DNA gyrase, B subunit [Candidatus Riesia pediculicola USDA] Length = 805 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 379/811 (46%), Positives = 540/811 (66%), Gaps = 18/811 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y++ +I++LKGL+AV+KRP MYIGDTD +GLHHM++EV+ N+IDE+LEGY + I Sbjct: 1 MKTDIYNSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVIYNSIDEALEGYCNRI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +T++ D S +V DNGRGIPTDLH +EG+SAAEVIMT LHAGGKF+ ++YKVSGGLHGVG Sbjct: 61 DLTIHEDNSISVLDNGRGIPTDLH-QEGVSAAEVIMTFLHAGGKFDNQTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALSS LKL I REG Y+ ++ G +PL G+ GT + F P IF Sbjct: 120 ISVVNALSSRLKLVIFREGKKYQQNYKFGKPISPLTEIGTTK-VRGTFIHFWPDLQIFKN 178 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F Y +L +R++ELSFLNS++ I L D R+ + I + KGGI +F+ YL+ K P+ Sbjct: 179 VHTFKYSSLLNRMQELSFLNSNISIHLTDIRNNKK--IRLRNKGGIRSFIKYLNSQKIPI 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 SI++A++WN+G+ ENVLC+TNNIPQK+GG+HL G RSA+TR + Y Sbjct: 237 HSKIFYFFEKEKETSIEVAVQWNEGFQENVLCYTNNIPQKEGGSHLIGFRSAITRTLKKY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++K KK+K +IG+D REG T+V+S+K P+P+FSSQTK+KLV+SE++S+VE+ V+ Sbjct: 297 IQKQ--PKKNKTKIIGEDTREGLTAVISVKTPNPKFSSQTKDKLVTSEIKSIVENLVSKN 354 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P + K I++K+L + R+AA++AR++ R+KG + +++LPGKLADC E++P+ Sbjct: 355 LDEYLLENPSDTKSILEKILSCARTREAAKKAREINRKKGSMILSNLPGKLADCREKNPE 414 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++ +++L+SQE+ +L TALG Sbjct: 415 LSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSQLNRILNSQEVVSLTTALGC 474 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+ + +KLRYH +IIMTDADVDG+HIRTLLLTFF+RQMP +I G +YI +PPLY Sbjct: 475 GIGEKEHNPDKLRYHSVIIMTDADVDGSHIRTLLLTFFYRQMPEIIKRGHIYIAQPPLYK 534 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI-SKNDLRNFIDDALKIDKLIK 602 I +GK Y++DE + +YLI+ + S +I +L+ I I +IK Sbjct: 535 IKKGKMNHYIQDELKMNEYLISYISEDTTMYVNSSSKLILKGKELKKIIIQYKYIQNIIK 594 Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL---NFIAEKSEKSWHGSI 657 + K F+E + V + +Q+ A L L N I EK S Sbjct: 595 SCEKKYSKIFLESLIYQRVLDENCFRNQKKLKDWAEILIKYLKKKNRIGEKYNYCIRRST 654 Query: 658 N---NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD-K 713 D+++ G +E ++++ + I S+ K S + + G Sbjct: 655 QCDSYFDLIISIERYGKRENYLIDRAFIESYEYKIISENSAFFFNLNEKSIIYLKKGKNN 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 ++ L ++ KG+ +QRYKGLGEMN QLWETT+NP TR L++VKI DA +A Sbjct: 715 LQFFSFEEALIWLYKKSLKGLVIQRYKGLGEMNPKQLWETTMNPKTRKLVQVKIKDAIEA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + LFS LMG+EVE RR FI++N++ +DI Sbjct: 775 NRLFSILMGNEVEKRRYFIEKNAIEVKNIDI 805 >gi|197116406|ref|YP_002136833.1| DNA gyrase subunit B [Geobacter bemidjiensis Bem] gi|197085766|gb|ACH37037.1| DNA gyrase, B subunit [Geobacter bemidjiensis Bem] Length = 796 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 372/807 (46%), Positives = 524/807 (64%), Gaps = 18/807 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y AD IQIL+GL+AV+KRP+MYIG T + GLHH++YE++DNAIDE+L GY D Sbjct: 2 NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V +++DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYKVSGGLHG Sbjct: 61 AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNTSYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L L I+R G+++ ++ G+ PL +TG GT++TF P +IF Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVHTQTYRKGVPQAPLEITGETK-RRGTKITFFPDGEIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F++D L RLREL+FLN+ V+I + D+R+ + + FY+GGI +FV YL+++K Sbjct: 180 ETTEFSFDVLSKRLRELAFLNAGVRIKIHDERTEKDHD--FFYEGGIRSFVEYLNKNKNL 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + PI I+G + + I++AM++ND Y E V F NNI +GGTHL G +++LTR + + Sbjct: 238 VNPEPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLVGFKASLTRTMNT 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K K ++ GDD REG T+V+S+K+ P+F QTK KL +SEV+ VE+ +N+ Sbjct: 298 YATANNLLKNVKVAISGDDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LEE+P A+ I++K +DA+ R+AAR+AR+LTRRKG L++ +LPGKLADC E+DP Sbjct: 358 KLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+ALG Sbjct: 418 ALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 T IG++ FD+ KLRYH+II+MTDADVDG+HI TLLLTFFFRQM LI G+LYI +PPLY Sbjct: 478 TSIGKEDFDMAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKIDKL 600 I RG+ QY+K+E +L+ YL+ + E + + V + + + ++L Sbjct: 538 KIKRGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGNDERVYRGKQIIPILTQLIDYNEL 597 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + + + L L + E + +S Sbjct: 598 FDKVVKKGINDELLRVFLKTGIKP------GLEEMADLIALLPKMKEAFPEVTTEEFGDS 651 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 I R V+ + S + S+ R+ ++ + + Sbjct: 652 IIFAFGNLR-VKIDHQI-FSVLESYEYGMLLENHKRMRSVMGAGTGVVLGAEDKLVLETE 709 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 +L +KG+ +QRYKGLGEMN QLWETT++ + R LL+VKI DA A+++F Sbjct: 710 NQEDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIF 769 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR+FI++N+L LDI Sbjct: 770 TVLMGDQVEPRRDFIEQNALNVSNLDI 796 >gi|2827016|gb|AAC38108.1| DNA gyrase subunit B [Buchnera aphidicola] Length = 803 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 373/806 (46%), Positives = 543/806 (67%), Gaps = 15/806 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +YD+ I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L G+ I V Sbjct: 3 DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S ++ D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+ SYK+SGGLHGVG+SV Sbjct: 63 IHSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGISV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186 VNALS L+L I + Y + NG ++PL + G A TGT + F PS IF + Sbjct: 123 VNALSEKLELIIYKNKKKYRQQYENGNPESPLCIIG-ATEITGTYIRFWPSYKIFTNKTQ 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L RLRELSFLNS++ I L D R+ E YKGGI+AF+ +L+++K P+ + Sbjct: 182 FQYEILSKRLRELSFLNSNILIHLKDNRT--NLEEKYHYKGGIKAFIKFLNKNKFPINLN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + ++ I +++A++WN+ + EN+LCFTNNIPQKDGGTHLSG R+ +TR + ++E+ Sbjct: 240 IFYFRCIKNQIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGITRTLNLHIER 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 +KK+K + G+D REG T+++SIK+PDP+FSSQTK+KLVSSEV+SV+ES +N+ L Sbjct: 300 EGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIESLINENLIE 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P++AK I++K+++++ +R+AARRAR++ ++KG LD+ +LPGKL+DC E DPK SE Sbjct: 360 YLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDCQENDPKLSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNV++ +FDK++ SQE+ +LITALG I Sbjct: 420 IYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSLITALGCSIT 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + + ++KLRY+ IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + + Sbjct: 480 KSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIAQPPLYKVKK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS-KNDLRNFIDDALKIDKLIKDFY 605 GK +Y+K++E + Y I +L E + ++ + + + D I +K Sbjct: 540 GKQEKYIKNDEEMNKYQIKIALKEIVIKNKKNENCNKIIKEFQKIVSDFNHIQIKMKKNK 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-------IAEKSEKSWHGSIN 658 + + + + ++ + + KL +LN K +++ + SI Sbjct: 600 NYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNKKDKNNTIYTSKIKRNENDSIF 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 I + R A Q+ L+ + S + ++ + KI Sbjct: 660 EPSIKLSRYANH--TQYDLKNDFLESKEYFLITNLGEKFKKFQENENFIEKGEKIYKIND 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + ++G +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF+ Sbjct: 718 IKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNMLQVTIKDAISANNLFN 777 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FIQ+N+L + +DI Sbjct: 778 TLMGDLVEPRRKFIQKNALKAENIDI 803 >gi|253698660|ref|YP_003019849.1| DNA gyrase B subunit [Geobacter sp. M21] gi|251773510|gb|ACT16091.1| DNA gyrase, B subunit [Geobacter sp. M21] Length = 796 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 374/807 (46%), Positives = 522/807 (64%), Gaps = 18/807 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y AD IQIL+GL+AV+KRP+MYIG T + GLHH++YE++DNAIDE+L GY D Sbjct: 2 NSEEQGDYGADKIQILEGLEAVRKRPAMYIGSTAAQ-GLHHLVYELVDNAIDEALAGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V +++DGS TV DNGRGIPTD+H EG SAAEV++T LHAGGKF+ SYKVSGGLHG Sbjct: 61 AVQVIIHLDGSVTVEDNGRGIPTDMHPTEGRSAAEVVLTVLHAGGKFDNSSYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L L I+R G++Y ++ G+ PL +TG GT++TF P +IF Sbjct: 121 VGSSVVNALSTRLDLEIRRNGHVYTQTYRKGVPQAPLEITGETK-RRGTKITFFPDGEIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F++D L RLREL+FLN+ V+I + D+R + + FY+GGI +FV YL+++K Sbjct: 180 ETTEFSFDVLSKRLRELAFLNAGVRIKIHDERFDKDHD--FFYEGGIRSFVEYLNKNKNL 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + PI I+G + + I++AM++ND Y E V F NNI +GGTHL G ++ALTR + + Sbjct: 238 VNPEPIYIRGEKSGVDIEIAMQYNDSYDEKVFSFANNINTHEGGTHLIGFKAALTRTMNT 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K K ++ G+D REG T+V+S+K+ P+F QTK KL +SEV+ VE+ +N+ Sbjct: 298 YANTNNLLKNVKVAISGEDLREGLTAVISVKISQPQFEGQTKTKLGNSEVKGYVETLMNE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LEE+P A+ I++K +DA+ R+AAR+AR+LTRRKG L++ +LPGKLADC E+DP Sbjct: 358 KLATYLEENPAMARKILEKSIDAARAREAARKARELTRRKGALEVGTLPGKLADCQEKDP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ELFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKML+SQEI TLI+ALG Sbjct: 418 ALCELFLVEGDSAGGSAKQGRDRKYQAILPLKGKILNVEKARFDKMLASQEIRTLISALG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 T IG++ FDI KLRYH+II+MTDADVDG+HI TLLLTFFFRQM LI G+LYI +PPLY Sbjct: 478 TSIGKEDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMLELIERGYLYIAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIEL--FCDSKGVISKNDLRNFIDDALKIDKL 600 I RG+ QY+K+E +L+ YL+ + E + V + + + ++L Sbjct: 538 KIKRGRKEQYLKNEAALQAYLLEEGTEEMTLKLGVGSDERVYRGKQIIPILTQLIDYNEL 597 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + + L L + E + +S Sbjct: 598 FDKVVKKGINDELLSVFLKTGIKP------GLEEMADLIALLPKMKEAFPEVTTEEFGDS 651 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 I R V+ + + + S+ R+ T ++ + + Sbjct: 652 IIFAFGNLR-VKIDHQI-FTVLESYEYGMLLESHKRMRSVMGTGTGVVLGAEDKVVLETE 709 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 +L +KG+ +QRYKGLGEMN QLWETT++ + R LL+VKI DA A+++F Sbjct: 710 SQEDILSFFMESAKKGLYIQRYKGLGEMNPEQLWETTMHQENRVLLQVKIEDAVAAEEIF 769 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMGD+VEPRR+FI++N+L LDI Sbjct: 770 TVLMGDQVEPRRDFIEQNALNVSNLDI 796 >gi|302035397|ref|YP_003795719.1| DNA gyrase subunit B [Candidatus Nitrospira defluvii] gi|300603461|emb|CBK39791.1| DNA gyrase, subunit B [Candidatus Nitrospira defluvii] Length = 824 Score = 829 bits (2141), Expect = 0.0, Method: Composition-based stats. Identities = 381/820 (46%), Positives = 532/820 (64%), Gaps = 23/820 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S ++ SY AD I++L+GLDAV+KRP+MYIG T G GLHH++YEV+DN++DE + G+ Sbjct: 10 SAKPKSDSYSADQIKVLEGLDAVRKRPAMYIGST-GVDGLHHLVYEVVDNSVDEHMAGFG 68 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I VT+++DGS TV DNGRGIPT +H + SAAEV +T LHAGGKF Q +Y VSGGLH Sbjct: 69 EAIEVTIHIDGSVTVVDNGRGIPTGMHSTQKKSAAEVALTVLHAGGKFEQGAYTVSGGLH 128 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG+SVVNALS WL+L I ++G ++E + G PL VTG GT+V F P I Sbjct: 129 GVGISVVNALSEWLELEIWQDGQVFEQRYERGKPQAPLAVTGKTK-RRGTKVRFKPDGQI 187 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F +F++D L RLREL+FLN + I+L D R + + YKGGI +FV +L+ K Sbjct: 188 FETLEFSFDVLAQRLRELAFLNKGLSITLKDDRKEKEQ--VFHYKGGIVSFVDHLNEAKT 245 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL PI +Q R ++ +++A+++NDGY EN+ F NNI K+GGTHL G ++ALTR I Sbjct: 246 PLH-KPIYVQTERADLILEVALQYNDGYAENLFSFANNINTKEGGTHLVGFKAALTRTIN 304 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 SY + KKD S+ GDD REG T+V+S+K+ +P+F QTK KL +SEV+ +VE+ VN Sbjct: 305 SYANANDLLKKDTESLSGDDVREGLTAVVSVKVRNPQFEGQTKAKLGNSEVKGIVEAAVN 364 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D L + EE+P A+ I+ K +DA+ R+AAR+A+DL RRK LD SLPGKLADCSE+D Sbjct: 365 DALGTYFEENPPVARKIIGKAIDAARAREAARKAKDLIRRKSALDGGSLPGKLADCSEKD 424 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDKMLSS EI TLI AL Sbjct: 425 PALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSDEIRTLILAL 484 Query: 482 GTGIG----------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 GTGIG +++FDI + RYHKI++MTDADVDG+HIRTLLLTFFFRQMP L+ Sbjct: 485 GTGIGRKKEDSDKPDKEAFDIARTRYHKIVLMTDADVDGSHIRTLLLTFFFRQMPELLER 544 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI +PPL+ + +GK+ +Y+KDE ++ +YL + ++ E + + +S L + Sbjct: 545 GYIYIAQPPLFKVKKGKTERYLKDEPAMNEYLADLAVEEVEVALENGREYLSGRRLLPTL 604 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + L+ H + + + + + +LA+ +AN +A K Sbjct: 605 KKLISFESLLHKVNKKHHEANMLRVFVDEPGLTREALKDQAALATIVANAKATLALVYPK 664 Query: 652 S-------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 + +S ++ K G+ Q + + S + + + Sbjct: 665 AEPTIDILEDEEHQSSKLVCKVATGGIAYQLDVTHELVGSADFRELQKQAPSAMGLGKPP 724 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + G ++ G L+ I G++G+++QRYKGLGEMN QLWETT++P+ R+LLR Sbjct: 725 YKIKIKGTEVHKNGSAELVQAILEEGKQGLNIQRYKGLGEMNPGQLWETTMDPEKRTLLR 784 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 VK+ D + D++F+ LMGDEVEPRR FIQ+++L LD+ Sbjct: 785 VKLEDMTGVDEIFTILMGDEVEPRRNFIQQHALEVRNLDV 824 >gi|21672304|ref|NP_660371.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654250|sp|P29435|GYRB_BUCAP RecName: Full=DNA gyrase subunit B gi|21622902|gb|AAM67582.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 803 Score = 828 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 373/806 (46%), Positives = 543/806 (67%), Gaps = 15/806 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +YD+ I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L G+ I V Sbjct: 3 DTYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVV 62 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S ++ D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+ SYK+SGGLHGVG+SV Sbjct: 63 IHSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNASYKISGGLHGVGISV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186 VNALS L+L I + Y + NG ++PL + G A TGT + F PS IF + Sbjct: 123 VNALSEKLELIIYKNKKKYRQQYKNGNPESPLCIIG-ATEITGTYIRFWPSYKIFTNKTQ 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L RLRELSFLNS++ I L D R+ E YKGGI+AF+ +L+++K P+ + Sbjct: 182 FQYEILSKRLRELSFLNSNILIHLKDNRT--NLEEKYHYKGGIKAFIKFLNKNKFPINLN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + ++ I +++A++WN+ + EN+LCFTNNIPQKDGGTHLSG R+ +TR + ++E+ Sbjct: 240 IFYFRCIKNQIELEIAIQWNNSHQENILCFTNNIPQKDGGTHLSGFRAGITRTLNLHIER 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 +KK+K + G+D REG T+++SIK+PDP+FSSQTK+KLVSSEV+SV+ES +N+ L Sbjct: 300 EGYNKKNKTIITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVKSVIESLINENLIE 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P++AK I++K+++++ +R+AARRAR++ ++KG LD+ +LPGKL+DC E DPK SE Sbjct: 360 YLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGKLSDCQENDPKLSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNV++ +FDK++ SQE+ +LITALG I Sbjct: 420 IYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQELTSLITALGCSIT 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + + ++KLRY+ IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + + Sbjct: 480 KSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGYVYIAQPPLYKVKK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS-KNDLRNFIDDALKIDKLIKDFY 605 GK +Y+K++E + Y I +L E + ++ + + + D I +K Sbjct: 540 GKQEKYIKNDEEMNKYQIKIALKEIVIKNKKNENCNKIIKEFQKIVSDFNHIQIKMKKNK 599 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF-------IAEKSEKSWHGSIN 658 + + + + ++ + + KL +LN K +++ + SI Sbjct: 600 NYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNKKDKNNTIYTSKIKRNENDSIF 659 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 I + R A Q+ L+ + S + ++ + KI Sbjct: 660 EPSIKLSRYANH--TQYDLKNDFLESKEYFLITNLGEKFKKFQENENFIEKGEKIYKIND 717 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + L+ + ++G +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF+ Sbjct: 718 IKNTLEWLIKETKRGFFVQRYKGLGEMNPDQLWNTTMNPETRNMLQVTIKDAISANNLFN 777 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FIQ+N+L + +DI Sbjct: 778 TLMGDLVEPRRKFIQKNALKAENIDI 803 >gi|323699691|ref|ZP_08111603.1| DNA gyrase, B subunit [Desulfovibrio sp. ND132] gi|323459623|gb|EGB15488.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans ND132] Length = 799 Score = 828 bits (2140), Expect = 0.0, Method: Composition-based stats. Identities = 355/803 (44%), Positives = 504/803 (62%), Gaps = 8/803 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+A+SI +L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY D I Sbjct: 1 MSEKQYNAESITVLEGLEAVRKRPAMYIGSTD-IRGLHHLVYEVIDNSIDEAMAGYCDKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL+MD SCTV+DNGRGIP D+H +E I A +V MT LHAGGKF+ SYKVSGGLHGVG Sbjct: 60 KVTLHMDNSCTVTDNGRGIPVDIHPKEKIPAVQVAMTTLHAGGKFDNDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS +++ +KR+G + M F G + L G A + TGT F P DIF V Sbjct: 120 VSCVNALSEFMETTVKRDGKTWRMKFERGHVVKGLEEVGPA-DSTGTSQRFRPDEDIFEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L+ R +EL++LNS ++I D+R+PE + + GGI+ +V ++ + + Sbjct: 179 NQFDYDVLRKRFKELAYLNSGLEIEFKDERNPESKPEIFKFTGGIKQYVKDINSNLTT-I 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +N+ ++ A+++ Y EN F NNI +GGTHL+G ++ALTR I SY+ Sbjct: 238 GEIVYGEGESENMLVEFALQYTASYKENTYTFANNIRTIEGGTHLAGYKTALTRAINSYI 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + KK + + GDD REG TSV+S+K+P+P+F QTK KL +SE +V + D L Sbjct: 298 QSADLPKKLIQKLTGDDVREGLTSVISVKLPNPQFEGQTKTKLGNSEAAGLVAGVIYDKL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P EA+ I++KV+DA+ R+AAR+ARDL RRKG L +LPGKLADC + P+ Sbjct: 358 NTFFEENPKEARFIIEKVVDAARAREAARKARDLVRRKGALSDNALPGKLADCQSKSPED 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+FLVEGDSAGGSAKQGR + QAILPLRGKILNVE+ R DKML ++EI +ITA G G Sbjct: 418 SEIFLVEGDSAGGSAKQGRDPKIQAILPLRGKILNVEKTRLDKMLGNKEIRAMITAFGIG 477 Query: 485 IG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 IG +D D +KLRYHKI+IMTDADVDG+HIRTLLLTFFFRQ LI+ G +YI +PPLY Sbjct: 478 IGHEEDEKDYSKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQYEELINRGHIYIAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 ++GK +++KD+ L+++L+ + + ++ + + V+ L +D + Sbjct: 538 RASKGKFERFIKDDVELDNFLLER-VGGDLSVKTGNGKVLEGQKLIGVMDKIRFLRTRFH 596 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + +++ + + ++ H + + D Sbjct: 597 EAETVGIDAILYRKLLNFPERISYTYFEEHDPEKFKRDFETNGYQVQIETEHDAEMDKDR 656 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-ILSLICNGDKIKITGPCS 721 + L +S K ++E L ++ ++G S Sbjct: 657 TYLDFENENGHRTRLAMEFFYSKLYKTAYNTYGELKEVCGGFEFVLDLKEEQRPVSGFFS 716 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L D + +G S+QRYKGLGEMN QLWETT+NP+ R++LRV I DA+ A+D+F LM Sbjct: 717 LYDAVIEEAHRGWSIQRYKGLGEMNPEQLWETTMNPENRTMLRVTIEDAAAANDIFVDLM 776 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPRREFI++N+L LDI Sbjct: 777 GDNVEPRREFIEKNALAVQELDI 799 >gi|108758234|ref|YP_628545.1| DNA gyrase subunit B [Myxococcus xanthus DK 1622] gi|108462114|gb|ABF87299.1| DNA gyrase, B subunit [Myxococcus xanthus DK 1622] Length = 815 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 364/805 (45%), Positives = 506/805 (62%), Gaps = 16/805 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y DSI L+G +AV+KRP MYIGDT GLH ++YEV+DNA+DESL G+ I V + Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDTMA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75 Query: 69 NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++DGS +V DNGRGIP H + G EV++T LHAG KF +YKVSGGLHGVGV+ Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VN LS W K+R+ R G +YE ++ G+ D P G + GT + F P + + + +F Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTHIAFKPDATVMELVEF 194 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 N++TL RLREL+FLN+ + I + D+R+ + + + GGI +FV YL++ K+ L P Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I R+ + +D+AM+WNDGY E + F NNI +GG+HLSG ++ALTR + SY EK Sbjct: 253 ISFSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K K + G+D REG ++V+S+K+ +P+F QTK KL +SEV+ +VE VND L ++ Sbjct: 313 SLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE P+ AK +V K+ DA R AAR+AR+ RRKGVLD LPGKLADC RDP +SEL Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQSRDPNESEL 432 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGIG Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIVTLITALGTGIGA 492 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + +D K RYH+II+MTDADVDG+HIRTLLLTFFFRQMP L+ G+LYI +PPLY +TR Sbjct: 493 EDYDPEKARYHRIILMTDADVDGSHIRTLLLTFFFRQMPELLQKGYLYIAQPPLYKVTRN 552 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K QYVKDE +L +YL+ ++ E G + +L+ ++ + ++ ++ Sbjct: 553 KKDQYVKDEHALNEYLLK--IASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKR 610 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSINN 659 D ++ V + E+ + A+ A F + E + Sbjct: 611 RDARVVDALVQGARLSAETLTDEAALEAAVKAAYDTFERRMPDVLGRVRHELVQDPEHHT 670 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ G + VL+ + + S + + + +I + Sbjct: 671 KKLVFHTDVNGAMRETVLDHAFLSSPEYLELSSLRDAFVALGKAPYKVRVDAGEITVFSV 730 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L + ++G+ +QRYKGLGEMN QLW+TT+NP TR+LL+V++ DA ++D++FS Sbjct: 731 QEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESDEIFSL 790 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMG+ VEPRREFI+ N+L LDI Sbjct: 791 LMGEAVEPRREFIERNALDVQNLDI 815 >gi|46446709|ref|YP_008074.1| DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25] gi|46400350|emb|CAF23799.1| probable DNA gyrase subunit B [Candidatus Protochlamydia amoebophila UWE25] Length = 835 Score = 828 bits (2138), Expect = 0.0, Method: Composition-based stats. Identities = 348/826 (42%), Positives = 512/826 (61%), Gaps = 28/826 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 IQ YDA SI +L+GL AV++RP MYIGDT G +GLHH++YEV+DN IDE++ GY Sbjct: 12 KIQLKEYDASSITVLEGLQAVRERPGMYIGDT-GVNGLHHLVYEVIDNCIDEAMAGYCTA 70 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 I V L+ D S ++ D+GRGIP + H+ E +SA EV+MT LHAGGKF++ +YKVS Sbjct: 71 IDVVLHKDNSISIEDDGRGIPVERHENESRKQGREVSAIEVVMTILHAGGKFDKDTYKVS 130 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS + +++ + G ++E+ F G + P+ V G GT+V F P Sbjct: 131 GGLHGVGVSCVNALSKKMIVQVCKNGLMHEIEFSQGKVVKPVQVIGETT-KRGTKVWFWP 189 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 ++ + DF+YD L R REL+FLN + I D++ E ++ Y+GG+ +FVSYL+ Sbjct: 190 DPEVMTTIDFDYDILAKRFRELAFLNKGINIFFRDEKHAEKEDVNFCYQGGLSSFVSYLN 249 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +K+PL +PI G + I ++AM+WNDGY E + + NNIP + GG+HL+G Sbjct: 250 ENKEPLFSNPIYFHGVKPGDDAPIEFEVAMQWNDGYSETIFSYVNNIPTRQGGSHLTGFS 309 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ K DK S+ G+D REG T+V+S+K+ +P+F QTK++L +S+V Sbjct: 310 TALTRVLNNYIKNHNLLKSDKISINGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDVG 369 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SVV+ V + L+ +L+E+P AK+I K + A+ R+AAR+AR+LT RK LD A LPGK Sbjct: 370 SVVQQIVGEELAIFLDENPSMAKLITDKAIIAAQAREAARKARELTLRKSALDSARLPGK 429 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E++P E+++VEGDSAGGSAK GR R QAILP+RGKILNVE+AR +K+L + E Sbjct: 430 LTDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNTE 489 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +GT++ ALG GIG+D F++ KLRYHK+IIMTDADVDG+HIRTLLLTFF+R MP+L+ N F Sbjct: 490 VGTMVAALGCGIGKDGFNLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPALVENNF 549 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY ++R K+ +Y+ E ++DYL+ LS+ + ++S + + + Sbjct: 550 IYIAQPPLYRVSRKKTSRYIHSEREMDDYLLELGLSDIQIKLASRENILSLEETKKLVST 609 Query: 594 ALKIDKLIKDFYP-----NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 L ++ I + + F + + + L E+ Sbjct: 610 ILAVEIFIDRIEKKGIPFREFLALKNENGLLPRFQMNLMEGARFAYSEDEFVALRQSEEE 669 Query: 649 SEKSWHGS----INNSDILVKRIA------RGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 S++ H I +I + ++ I +Y FS + Sbjct: 670 SQRQRHQETLASIPADEITPEMRTFKPSRLHFIELYEEGGIEEIQEPLQEYGLDFSYYMC 729 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 N + + + G ++D + + GRKGI +QRYKGLGEMNA QLWETT++P Sbjct: 730 ANGVILDIVEEGGKTYTYYTLREVIDFLRNNGRKGIEIQRYKGLGEMNADQLWETTMDPV 789 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R+L++V + D AD +F+ LMG++V PRR FI++++L LD+ Sbjct: 790 KRTLIKVTLPDVIAADHMFTMLMGEDVPPRRAFIEQHALSVKNLDV 835 >gi|116750115|ref|YP_846802.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB] gi|116699179|gb|ABK18367.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB] Length = 808 Score = 827 bits (2136), Expect = 0.0, Method: Composition-based stats. Identities = 375/806 (46%), Positives = 516/806 (64%), Gaps = 10/806 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A I +L+GL AV+KRPSMYIG+ E GLHH++YEV+DN+IDE+L G+ D Sbjct: 8 ERNSHDEYTAQQITVLEGLSAVRKRPSMYIGNVSTE-GLHHLVYEVVDNSIDEALVGHCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I + +++DGS TV DNGRGIP D H++E + A +V+MT LHAGGKF+ SYKVSGGLHG Sbjct: 67 SIKIQIHLDGSVTVDDNGRGIPVDTHEKENLPAVQVVMTMLHAGGKFDDASYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS +L++ I+REG +Y + G PL+V G GT VTF P ++IF Sbjct: 127 VGVSVVNALSEYLEVEIRREGKVYYQRYERGEAKTPLIVKGET-QRRGTRVTFKPDTEIF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + + ++D L RLREL+FLN V I L D+R P+ R+ +GG+ +FV YL+++K+P Sbjct: 186 TDTEISFDILAQRLRELAFLNRGVSIELSDERIPKDRQYCY--EGGLVSFVEYLNKNKEP 243 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L I + G + +SID+A+++N Y+E + F NNI K+GGTHL G ++ LTR I Sbjct: 244 LYPEVIYVGGEKQGVSIDIAIQYNQTYNEKIFTFANNINTKEGGTHLVGFKTGLTRSIKQ 303 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y ++ +K D +IGDD REG T+++S+K+ P+F QTK KL +S+V+ +VE+ V + Sbjct: 304 YATQNKMAKADLDKMIGDDVREGLTAIVSVKLSQPQFEGQTKTKLGNSDVKGLVENLVYE 363 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS + EE+P + I+ KVL+A+ R+AAR+A++LTRRKGVL SLPGKLADC ERDP Sbjct: 364 KLSIFFEENPKVIRTILDKVLEAARAREAARKAKELTRRKGVLSDHSLPGKLADCQERDP 423 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILNVE++RFDKM+ +QEI T+I+ALG Sbjct: 424 SRSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRFDKMVENQEIRTMISALG 483 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D ++ KLRYHK IIMTDADVDGAHIRTLLLTFFFR MP LI G L+I +PPLY Sbjct: 484 TGIGKDEYNPEKLRYHKTIIMTDADVDGAHIRTLLLTFFFRMMPELIERGHLFIAQPPLY 543 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + GK Y+KD+ESL+ YL++++ ++ S + L + + ++ Sbjct: 544 RLAVGKQEFYMKDDESLDAYLLSRAADKKQVFLAGSAKPLPPEQLIQLMRAYSRYKDWLE 603 Query: 603 DFYPNH-DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + IE + S E ++ E D Sbjct: 604 RQSQKGVPRDVIEHVIRIYSIRKLSPAEHEENIGVLRTELEKAGFEIVSIEDEEEHQGYD 663 Query: 662 ILVKR--IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD-KIKITG 718 + ++R +A G L + + S K N E + + +G + + Sbjct: 664 LEIRRPGVANG-GTGVRLGYAFLQSIEFKKLLELYNNHLEIFNQTPYAVKDGQGEARFDH 722 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P L + RKG ++QRYKGLGEMN QLWETT+NP+ R+LL+V++ D AD+LF+ Sbjct: 723 PGDLFRFLTEEARKGTNIQRYKGLGEMNPEQLWETTMNPEKRTLLQVRVEDQYLADELFT 782 Query: 779 RLMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR+FIQ N+L LDI Sbjct: 783 TLMGDRVEPRRDFIQFNALDFRELDI 808 >gi|160895453|ref|YP_001561035.1| DNA gyrase subunit B [Delftia acidovorans SPH-1] gi|160361037|gb|ABX32650.1| DNA gyrase, B subunit [Delftia acidovorans SPH-1] Length = 859 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 396/850 (46%), Positives = 527/850 (62%), Gaps = 54/850 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +S Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L GY D Sbjct: 15 EGSDSSGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGYCD 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 I VT++ DGS +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVS Sbjct: 75 DILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVS 133 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSA 165 GGLHGVGVS VNALS WLKL ++R+G +YE+ F G + +P+ V G + Sbjct: 134 GGLHGVGVSCVNALSIWLKLNVRRDGEVYEIDFSRGHVQNRPIEIVDGVEVSPMRVVGKS 193 Query: 166 GNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 + GT+V FLP ++IF+ F Y+ L RLRELSFLN+ V+I L D+R + RE Sbjct: 194 -DKRGTKVHFLPDTEIFTQNHEFRYEILAKRLRELSFLNNGVRIRLKDER--DGREDDFS 250 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVL 274 GG+ FV +++ +KK L + G+R I +++AM+WND Y E VL Sbjct: 251 GAGGVMGFVQFINANKKVLHPTAFHANGTRPAESYGGIPGTEIGVEVAMQWNDSYAEQVL 310 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 CFTNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+ Sbjct: 311 CFTNNIPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKV 370 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 P+P+FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K++DA+ R+AAR+ Sbjct: 371 PEPKFSSQTKDKLVSSEVRAPVEDIVAKALTDYLEEKPNDAKILCSKIVDAARAREAARK 430 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 AR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR R+ QAILPLR Sbjct: 431 AREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRDRKFQAILPLR 490 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINKLRYHKIIIMT 504 GKILNVE+AR++K+L+S EI TLITALGTGIG+ D FD NKLRYH+IIIMT Sbjct: 491 GKILNVEKARYEKLLTSNEIVTLITALGTGIGKATAESGKSGSDDFDPNKLRYHRIIIMT 550 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+KD +L YL+ Sbjct: 551 DADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYIKDGPALNQYLL 610 Query: 565 NQSLSEEIELFCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623 +L + + +L + L + +I D + +A+ GV Sbjct: 611 RIALMNASVSTGGANPRTLDGEELAKLANMHLAAETVIDRLSNFMDAEAL-RAIADGVQI 669 Query: 624 CESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 E + A L +L + + + + R G + +L Sbjct: 670 TLDSIEAAQACAPILEAKLRELTTTGVPAEVTAEIDPVSEKPVLRISRHHHGNIKSSILT 729 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLDTIFSIGRKGI 734 + S + + + K + + + Sbjct: 730 QEFVRSHDYAALADEAQNFNGLLGEGAKVTRGEGEKAKSDKAGDFRQAMQWLLHEAERTT 789 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 + QRYKGLGEMN QLWETT++P RSLL+V+I DA +AD +F+ LMGDEVEPRREFI+ Sbjct: 790 ARQRYKGLGEMNPEQLWETTMDPTVRSLLQVQIGDAIEADRVFTMLMGDEVEPRREFIET 849 Query: 795 NSLPS-ALDI 803 N+L + +D+ Sbjct: 850 NALRAGNIDV 859 >gi|220903291|ref|YP_002478603.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867590|gb|ACL47925.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 801 Score = 826 bits (2135), Expect = 0.0, Method: Composition-based stats. Identities = 366/810 (45%), Positives = 505/810 (62%), Gaps = 16/810 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N + Y A SI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ G Sbjct: 1 MALQNPVDGGYTASSITILEGLSAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+ SYKVSGG Sbjct: 60 FCTRITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNTSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS L + ++R+G Y + G+ + L V G + GT V F P Sbjct: 120 LHGVGVSCVNALSEDLTVTVRRDGKRYRQRYSRGLPQDELTVIGEGVDGHGTTVRFKPDE 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF V +F+YDTL+ R EL++LN + I ID+R E +GGI FVS L+ Sbjct: 180 EIFEVSEFSYDTLKKRFEELAYLNKGLFIECIDERIGETH--VFHAEGGIRQFVSDLNSG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ + I +G DN+++D A+++N GY EN+L F NNI K+GGTHL G R+ALTR Sbjct: 238 EQGIHS-IIFGEGVVDNVTVDFALQYNAGYKENILTFANNIRTKEGGTHLVGFRTALTRA 296 Query: 300 ITSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 I Y++ K S+ GDD REG T+V+S+K+P P+F QTK KL +SEV +V Sbjct: 297 INGYIKGQADLVKKMKNTSLSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVS 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V D L+ + EE+P + ++I++K +DA+ RDAARRA++L RRKG L +LPGKLADC Sbjct: 357 GVVYDRLNIYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNALPGKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 +DP +SELF+VEGDSAGGSAKQGR+ NQAILPLRGKILN ER RFDKML+++E+ L Sbjct: 417 QSKDPSESELFIVEGDSAGGSAKQGRNPRNQAILPLRGKILNTERTRFDKMLANKEVKAL 476 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA+G GIG+D D+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ ++ GF+YI Sbjct: 477 ITAMGAGIGEDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVERGFVYIA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY + + +++KD+ L +L+++ +SE++ + + + L N ++ + Sbjct: 537 QPPLYRVHNSRMEKFIKDDAELNSFLLSR-VSEDVIVTATNGKEYTGTALSNLVERIETL 595 Query: 598 DKLIKD--FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + D F+ + + + L L R + ++E+ Sbjct: 596 ELRLDDAEMTGTPRDLFLALTTYPEQVDAAMLERQDAGLTEWLNERGYMLTLETEQ---- 651 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714 S ++ + L Q S + ++FS EE + + Sbjct: 652 SEDDEERLFAIFENTGGHQSRRGMEFFASRLYRMTWQLFSELREECGGLDFVMRRKDGET 711 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + RKGI++QRYKGLGEMN QLW TT+NP+ R LL+V + DA++A Sbjct: 712 PAQNLFDLMRMVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRILLQVSVDDANEAS 771 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D F LMGD VEPRREFI+ N+L LDI Sbjct: 772 DAFMELMGDRVEPRREFIERNALAVHDLDI 801 >gi|332702340|ref|ZP_08422428.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay] gi|332552489|gb|EGJ49533.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay] Length = 807 Score = 825 bits (2131), Expect = 0.0, Method: Composition-based stats. Identities = 372/799 (46%), Positives = 506/799 (63%), Gaps = 10/799 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N Y ADSI +L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY D I V Sbjct: 17 NGGYTADSITVLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMAGYCDRIRV 75 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L++D S TVSDNGRGIP D+H +EG A EV+MT+LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 76 VLHLDNSVTVSDNGRGIPVDMHPKEGKPAVEVVMTKLHAGGKFDSGSYKVSGGLHGVGVS 135 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS +L++ +KR+G + + F G+ L V G TGT V F P +IF Sbjct: 136 CVNALSEYLEVFVKRDGKRHHLRFERGVTVGQLTVIGEGETATGTTVRFRPDEEIFETNQ 195 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+TL R +EL++LN + I D+R + Y GGI +FV L+ + L Sbjct: 196 FSYETLSKRFQELAYLNDGLTIEFKDERESKE--EAYCYHGGIVSFVRDLNEGQGFLH-D 252 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I + G D++ + LAM++N GY ENVL F NNI K+GGTHL G ++ALTR + +YVEK Sbjct: 253 IIDVSGEVDSVIVSLAMQYNAGYKENVLTFANNIRTKEGGTHLVGFKTALTRAVNNYVEK 312 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 KK K+ V GDD REG T+V+S+K+P+P+F QTK KL +SE+ +V S V + L Sbjct: 313 GDLPKKLKQKVSGDDVREGLTAVVSVKLPNPQFEGQTKTKLGNSEIAGIVSSQVYERLMT 372 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P +AK I++K++D++ R+AAR+ARDL RRKG L SLPGKLADC + P++SE Sbjct: 373 FFEENPNDAKAIIEKIVDSARAREAARKARDLVRRKGALSDHSLPGKLADCQSKKPEESE 432 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQGR QAILPLRGKILNVER RFDKML ++EI +ITA+G GI Sbjct: 433 LFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRFDKMLGNKEIRAMITAMGAGID 492 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D D+ +LRYHKI+IMTDADVDGAHIRTLLLTFFFRQ LI NGFLYI +PPL+ + + Sbjct: 493 EDM-DLERLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYRQLIDNGFLYIAQPPLFRVQK 551 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK+ +Y+ DE +L +LI +++ E+ L ++ ISK L ++ ++ +++ Sbjct: 552 GKNEKYIVDEPTLRSHLIE-AIAGEVTLIAPNEQEISKKKLERLLEKIAYLEAKVREAGA 610 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + +V+ + L S L L ++ Sbjct: 611 YGFSDELLLSVLEYGTRLTPASFQDGELES-LRTYLTSKGHLVWTEQEMELDELR-TFVI 668 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGPCSLLDT 725 ++ + S +Y + I + L+L K++G L Sbjct: 669 FENENAQRTRIGVEFFNSKLYRYAYDALDTIRQATGGHELTLRKREQSYKVSGYFHALRA 728 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + K ++QRYKGLGEMN QLWETT+NP+ R++ +V + DA +AD +FS LMGD+V Sbjct: 729 VIDEAHKEYNIQRYKGLGEMNPEQLWETTMNPENRTMFQVSVEDAEEADKIFSDLMGDQV 788 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FI+ N+L LDI Sbjct: 789 EPRRQFIERNALSVSELDI 807 >gi|162456449|ref|YP_001618816.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] gi|161167031|emb|CAN98336.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] Length = 832 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 370/836 (44%), Positives = 509/836 (60%), Gaps = 37/836 (4%) Query: 1 MSD-------NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M++ ++ +SYDA SI L+GL+AV+KRP MYIGD SGLHH+++E +DNA+ Sbjct: 1 MTEPTLSQPTDLTKASYDAHSITALEGLEAVRKRPGMYIGDVHDGSGLHHLVWEAVDNAV 60 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE L G I VT++ DGS ++ DNGRGIP +H + G+SAAEV+MT LHAGGKF+ S Sbjct: 61 DEHLAGACTEIRVTVHFDGSVSIEDNGRGIPVGMHAK-GVSAAEVVMTVLHAGGKFDNSS 119 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEV 173 YKVS GLHGVGVS VNA+S WLKL IKREG ++ + G+ PL G + TGT++ Sbjct: 120 YKVSAGLHGVGVSAVNAVSEWLKLEIKREGKLWFQEYARGVPKAPLKGIGVT-DKTGTKL 178 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 TF P +FS +F++D L RLREL+FLN+ + I L D+R + R YKGGI FV Sbjct: 179 TFKPDPVVFSTVEFSFDVLASRLRELAFLNAGLIIHLHDQRP-DGRAEIYEYKGGISEFV 237 Query: 234 SYLDRHKKPLMQSPIRI-----------------QGSRDNISIDLAMRWNDGYHENVLCF 276 S L++ K+P+ I + + +++A++WN Y E + C+ Sbjct: 238 SLLNKTKEPIHDDVISFVSQHEVGAAGDGANGRGSAATPPVGVEVALQWNGSYTEAIFCY 297 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNN+ KDGGTHL+GLR+ALT+ I +Y K+ K+ + G+D REG T VLSIK PD Sbjct: 298 TNNVHNKDGGTHLTGLRAALTKTINNYGSAHNLFKELKQGLQGEDAREGLTCVLSIKHPD 357 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P F SQTK KLVSSEV+ +VE+ V+D L + EE+P AK I++K + A A R Sbjct: 358 PSFDSQTKSKLVSSEVKGIVEAAVSDKLGQYFEENPQSAKKIIEKAVVA-AKAREAARKA 416 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 RKG LD+ SL GKLADC +DP+KSE+++VEG+SAGGSAK GR R QAILPL+GK Sbjct: 417 REVIRKGSLDVTSLSGKLADCQSKDPEKSEIYIVEGESAGGSAKMGRDRHFQAILPLKGK 476 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIG-QDSFDINKLRYHKIIIMTDADVDGAHIRT 515 ILNVERAR D+MLSS E+GTLITALG GI F+I+KLRY KII+MTDADVDG+HIRT Sbjct: 477 ILNVERARLDRMLSSAEVGTLITALGCGINDAGGFEIDKLRYQKIILMTDADVDGSHIRT 536 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLTFFFRQMP ++ G+L+I +PPLY + +GK Y+KD+ +L+++L+ ++ + Sbjct: 537 LLLTFFFRQMPEIMEKGYLFIAQPPLYRVRKGKRDLYLKDQGALDEFLVGNAVDGLEIVA 596 Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF--NCESDQEINVS 633 ++ I+ L + ++ + D + + S + + + + Sbjct: 597 SGAQSGIAGQPLYRLAQRLKRFRAVLSNIDKRCDARIVAALLRSSGLGRDDLRETKKVAA 656 Query: 634 LASKLANRL-----NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 A +L L + S I V + V++ + S + Sbjct: 657 AADELRAYLKQRYPDLFPLTLSTPRDTEHGTSRIEVVPRPGASARKSVIDWDLVNSPEYQ 716 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + + + I SL+D I G+KGIS+ RYKGLGEMNA Sbjct: 717 EAWSIEQDLRSIGAPPYRARTSSGEETIENGESLVDYIEERGKKGISISRYKGLGEMNAD 776 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +LWETT+NPD R+LL+V+I DA + D+LF+ LMGD+VEPRR FI++N+L LDI Sbjct: 777 ELWETTMNPDARTLLQVRIDDAVKTDELFTILMGDQVEPRRNFIEQNALNVKNLDI 832 >gi|264676139|ref|YP_003276045.1| DNA gyrase B subunit [Comamonas testosteroni CNB-2] gi|262206651|gb|ACY30749.1| DNA gyrase, B subunit [Comamonas testosteroni CNB-2] Length = 855 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 390/860 (45%), Positives = 527/860 (61%), Gaps = 62/860 (7%) Query: 1 MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M++ + + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+ Sbjct: 1 MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107 IDE+L GY D I VT++ DGS +V DNGRGIPT D H E SAAE+ +T LHAGG Sbjct: 61 IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGG 119 Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155 KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G +E+ F G + Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAE 179 Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214 +P+ V G A + GT+V FLP +IF F Y+ L RLRELSFLN+ V+I L D+R Sbjct: 180 VSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264 + GG++ FV +++ KK L + GSR I ++++M+ Sbjct: 239 DGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEVSMQ 296 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K V GDD RE Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDDMRE 356 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G +VLS+K+P+P+FSSQTK+KLVSSEVR+ VE V L+ +LEE+P +AKI+ K+++ Sbjct: 357 GLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGKIIE 416 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 A+ R+AAR+AR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494 R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+ D ++ +K Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+K Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596 Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613 D +L YL+ +L+ D+ + +L + L + +I+ D + Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEGEELAKLANMHLAAETVIERLSNFMDAEAL 656 Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668 ++ +E A L +L + + + + + R Sbjct: 657 RAIADGVQIKLDTIEEA-QECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724 G + +L + S + + + K+ + Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S + QRYKGLGEMN QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FI++N+L + +D+ Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855 >gi|310817572|ref|YP_003949930.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1] gi|309390644|gb|ADO68103.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1] Length = 817 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 365/807 (45%), Positives = 512/807 (63%), Gaps = 18/807 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A+SI L+G +AV+KRP MYIGDT GLH ++YEV+DNA+DE+L GY I+V + Sbjct: 17 EYGAESITKLEGREAVRKRPGMYIGDT-MTYGLHKLVYEVVDNAVDEALAGYCTEISVDI 75 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEG---ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 ++DGS +V DNGRGIP H + +V++T LHAG KF +YKVSGGLHGVGV Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPDPKFHDKDTVDVVLTELHAGSKFGNGAYKVSGGLHGVGV 135 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 + VN LS WLK+RI+R G +YE S+ GI D + G + GT V F P + + Sbjct: 136 TCVNFLSEWLKVRIQRNGKVYEQSYSRGIPDGKVKEVG-TTDKRGTLVWFKPDTQVMEAV 194 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF+++TL RLREL+FLN+ + IS+ D+R+ + E + GGI +FV YL++ K+ L Sbjct: 195 DFDFETLSQRLRELAFLNAGLHISIRDERTNKEHE--FKFDGGIGSFVEYLNKSKQALHD 252 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ ++ +S++LAM+WNDGY E + F NNI +GG+HLSG ++ALTR + SY E Sbjct: 253 KPIFVRTEKEGVSLELAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAE 312 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KS K K + G+D REG +V+S+K+ +P+F QTK KL +SE++ +VE VND L+ Sbjct: 313 KSGLWKDLKETPTGEDAREGLAAVISVKLSNPQFEGQTKTKLGNSEIKGLVEQMVNDQLA 372 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P K +V K+ DA R AAR+AR+ RRKG+LD LPGKLADC RDPK+S Sbjct: 373 TYLEENPSNGKKVVAKIGDACRARIAARKARETVRRKGILDGGGLPGKLADCQSRDPKES 432 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ARF+KML+S EI TLITALGTGI Sbjct: 433 ELYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKARFEKMLTSAEIITLITALGTGI 492 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G + +D K RY++II+MTDADVDG+HIRTLLLTFFFRQM L+ G+LYI +PPLY +T Sbjct: 493 GAEDYDPAKARYNRIILMTDADVDGSHIRTLLLTFFFRQMRELLDLGYLYIAQPPLYKVT 552 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 R K YVKDE +L +YL+ ++ E G + ++L++ ++ + ++ ++ Sbjct: 553 RNKKDLYVKDERALNEYLLR--IAAEHSRVVTPNGELGGSELKSILEKVITYEERLEKQA 610 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE--------KSEKSWHGSI 657 D ++ V + E+ + A +F K E+ Sbjct: 611 KRRDARVVDALVQAARVKAETLADEKGLEAEVDRMYADFRKRMPDVLGRVKHERRDDPEH 670 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 + ++ G + VL+ + + S + ++ +G ++ Sbjct: 671 HTKKLVFHTEINGSMRETVLDHAFLSSPEYLELVALREAVTGLGRPPYTVKVDGGEVTAF 730 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 +L + +KG+ +QRYKGLGEMN QLW+TT+NP TR+LL+V++ DA ++D +F Sbjct: 731 SVQEVLAVVRKDAQKGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVQLKDAVESDGIF 790 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 S LMG+ VEPRREFI+ N+L LDI Sbjct: 791 SLLMGEAVEPRREFIERNALDVQNLDI 817 >gi|221069745|ref|ZP_03545850.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1] gi|220714768|gb|EED70136.1| DNA gyrase, B subunit [Comamonas testosteroni KF-1] Length = 855 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 392/860 (45%), Positives = 528/860 (61%), Gaps = 62/860 (7%) Query: 1 MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M++ + + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+ Sbjct: 1 MTEENKPDTQSAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107 IDE+L GY D I VT++ DGS +V DNGRGIPT D H E SAAE+ +T LHAGG Sbjct: 61 IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTRVKMDDKH-EPKRSAAEIALTELHAGG 119 Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155 KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G +E+ F G + Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSIWLKLTVSRDGVRHEIDFSRGFVQNRLIEVVDGTE 179 Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214 +P+ V G + + GT+V FLP +IF F Y+ L RLRELSFLN+ V+I L D+R Sbjct: 180 VSPMRVLGPS-DKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264 + GG++ FV +++ KK L + +G+R I +++AM+ Sbjct: 239 DGKE--DDFSGAGGVKGFVEFINGTKKVLHPTTFYAEGTRPAETYGGIPGTEIGVEVAMQ 296 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K V GDD RE Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNELAKKAKVEVTGDDMRE 356 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G VLS+K+P+P+FSSQTK+KLVSSEVR+ VE V L+ +LEE P +AKI+ K+++ Sbjct: 357 GLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVGKLLAEFLEEKPNDAKILCNKIVE 416 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 A+ R+AAR+AR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494 R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+ D ++ +K Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+K Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596 Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613 D +L YL+ +L+ D+ + +L + L + +I+ D + Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEGEELAKLANMHLAAETVIERLSNFMDAEAL 656 Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668 +A+ GV E A L +L + + + + + R Sbjct: 657 -RAIADGVQIKLDTIEQAQECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724 G + +L + S + + + K+ + Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S + QRYKGLGEMN QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FI++N+L + +D+ Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855 >gi|219681399|ref|YP_002467784.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471072|ref|ZP_05635071.1| DNA gyrase subunit B [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624242|gb|ACL30397.1| DNA gyrase subunit B [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085760|gb|ADP65842.1| DNA gyrase subunit B [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086337|gb|ADP66418.1| DNA gyrase subunit B [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086912|gb|ADP66992.1| DNA gyrase subunit B [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 803 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 373/807 (46%), Positives = 543/807 (67%), Gaps = 15/807 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + YD+ +I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L GY I V Sbjct: 2 KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+ SY++SGGLHGVG+S Sbjct: 62 TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I + Y+ + +G +NPL + G+ T + F PS F + Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS++ I L + + + YKGGI+AF+ +L+ K P+ Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR + ++E Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G+ +Y+K++E + Y I +L + + D+ + K I ++I Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598 Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657 ++ + + + + D EI LA LN + +K+ +I Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I + R A ++ + + S ++ + + + +G KI Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 + + ++G+ +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMG+ VEPRR+FI+ N+L + +D+ Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803 >gi|299530930|ref|ZP_07044344.1| DNA gyrase, B subunit [Comamonas testosteroni S44] gi|298721151|gb|EFI62094.1| DNA gyrase, B subunit [Comamonas testosteroni S44] Length = 855 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 390/860 (45%), Positives = 527/860 (61%), Gaps = 62/860 (7%) Query: 1 MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M++ + + Y +IQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+ Sbjct: 1 MTEENKPDTQTAADAGGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNS 60 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGG 107 IDE+L GY D I VT++ DGS +V DNGRGIPT D H E SAAE+ +T LHAGG Sbjct: 61 IDEALAGYCDDILVTIHADGSLSVIDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGG 119 Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------ 155 KFNQ SYKVSGGLHGVGVS VNALS WLKL + R+G +E+ F G + Sbjct: 120 KFNQNSYKVSGGLHGVGVSCVNALSVWLKLTVSRDGRRHEIDFSRGFVQNRLIEVVDGAE 179 Query: 156 DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR 214 +P+ V G A + GT+V FLP +IF F Y+ L RLRELSFLN+ V+I L D+R Sbjct: 180 VSPMRVVG-ASDKRGTKVHFLPDQEIFKENFEFRYEILAKRLRELSFLNNGVRIRLKDER 238 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMR 264 + GG++ FV +++ KK L + GSR I ++++M+ Sbjct: 239 DGKE--DDFSGAGGVKGFVQFINGTKKVLHPTTFHANGSRPAETYGGIPGTEIGVEVSMQ 296 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 WND Y E VLCFTNNIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K V GDD RE Sbjct: 297 WNDSYAEQVLCFTNNIPQRDGGTHLTGLRAAMTRVIGKYIADNEMAKKAKVEVSGDDMRE 356 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G +VLS+K+P+P+FSSQTK+KLVSSEVR+ VE V L+ +LEE+P +AKI+ K+++ Sbjct: 357 GLCAVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVAKSLTDFLEENPNDAKILCGKIIE 416 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 A+ R+AAR+AR++TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSAKQGR Sbjct: 417 AARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPALCEIYIVEGDSAGGSAKQGRD 476 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ----------DSFDINK 494 R+ QAILPLRGKILNVE+AR++K+LSSQEI TLITALGTGIG+ D ++ +K Sbjct: 477 RKFQAILPLRGKILNVEKARYEKLLSSQEIITLITALGTGIGKVSEDSGKSSSDDYNPDK 536 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y+K Sbjct: 537 LRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPDLVERGHIYIAQPPLYKVKNGKEELYLK 596 Query: 555 DEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613 D +L YL+ +L+ D+ + +L + L + +I+ D + Sbjct: 597 DGPALNKYLLKIALNHASVNTGGDNPRTVEDEELAKLANMHLAAETVIERLSNFMDAEAL 656 Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINNSDILVKRIA 668 ++ +E A L +L + + + + + R Sbjct: 657 RAIADGVQIKLDTIEEA-QECAPILEAKLRELTTTGVPADVTAEIDPNSEHPILRISRHH 715 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI----KITGPCSLLD 724 G + +L + S + + + K+ + Sbjct: 716 HGNIKSSILTQEFVRSHDYAALSDEAQNFVGLLGEGAKVTRGEGEKAKTEKVGDFRQAMA 775 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S + QRYKGLGEMN QLWETT++P+ RSLL+VKI DA +AD +F+ LMGDE Sbjct: 776 WLISEAERTTGRQRYKGLGEMNPEQLWETTMDPNVRSLLQVKIGDAIEADRVFTMLMGDE 835 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FI++N+L + +D+ Sbjct: 836 VEPRRNFIEDNALRAGNIDV 855 >gi|224367126|ref|YP_002601289.1| GyrB [Desulfobacterium autotrophicum HRM2] gi|223689842|gb|ACN13125.1| GyrB [Desulfobacterium autotrophicum HRM2] Length = 808 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 364/812 (44%), Positives = 517/812 (63%), Gaps = 15/812 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N Y A++I+IL+GL+AV+KRPSMYIG+ G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MKNNDNVKDYGANNIKILEGLEAVRKRPSMYIGNV-GIEGLHHLVYEVVDNSIDEAMAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V DNGRGIP +H+ E I AAEV+MT+LHAGGKF++ SYKVSGGL Sbjct: 60 CDKIIVIIHPDQSVSVEDNGRGIPVGMHETEHIPAAEVVMTKLHAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L++ + ++G +Y + G+ L +TG + +GT + F P D Sbjct: 120 HGVGISVVNALSINLEMEVFKDGKVYFQRYSRGVKQTELEITGDT-DKSGTRILFKPDFD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I + +F Y+ L R+REL+FLN ++I + D+ S E Y+GG+ +FV YL+R+ Sbjct: 179 IMNENEFEYEKLSRRMRELAFLNKGIRIIIEDELSAEK--DDFHYEGGLLSFVEYLNRNF 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + PI I+G + ++S+D+A+++ND + E + F NNI +GGTHLSG + ALTR + Sbjct: 237 TAMH-EPIHIEGEKSDVSVDVAIQYNDTFKEKIYSFANNINTIEGGTHLSGFKGALTRTL 295 Query: 301 TSYVEK-SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +Y + + GDD REG T+++S+K+ DP+F QTK KL +SEV+ +VES Sbjct: 296 NNYASSGNLPKNMQNIKIGGDDVREGLTAIVSVKVMDPQFEGQTKTKLGNSEVKGIVESL 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +N+ L+ +LEE+P AK I+ K +DA+ RDAA+RAR+L R+KG L ++LPGKLA+C Sbjct: 356 INERLAMFLEENPNTAKKIIMKAVDAARARDAAKRARELARKKGTLLDSTLPGKLAECQY 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DPK+ ELFLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDK+L S EI + T Sbjct: 416 ADPKERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARFDKILRSDEIKNVFT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 LGTG G++ +DI K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP LI NG+LYI +P Sbjct: 476 VLGTGAGKEEYDIEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPDLISNGYLYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PL+ I +GKS Y+KDE DYL+ + ++ DS+ + + L F+ D + Sbjct: 536 PLFRIGKGKSGIYLKDEPEYRDYLLKRICEQKEVRLADSEEPLPEESLFAFLKDLISFHN 595 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + T + +I + E + S + ++ N Sbjct: 596 AVDRLTMREMDTKLLMFLIGEGVKDKFFLEDLERMTSLKETLTAKGYIIRDITFDEERNL 655 Query: 660 SDILV----KRIARGVQEQFV-LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 ++ + +G++ V + S I N+IE L ++ Sbjct: 656 YEMDILGNEHDREKGIKHSLVTVGRSLIAMGDYTIMHKVLNKIESMDLPPFNVCAKSSSD 715 Query: 715 KITGPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K+ + I + +KGI++QRYKGLGEMN QLWETT++P+ R +L+V I DA Sbjct: 716 KVVSFEDRTEFFNYIMAEAKKGIAIQRYKGLGEMNPDQLWETTMDPEKRVMLQVNIEDAE 775 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +AD++F+ LMG+EVEPRR FIQ N+L +LD Sbjct: 776 KADEIFTLLMGEEVEPRRNFIQTNALEVSSLD 807 >gi|239813022|ref|YP_002941932.1| DNA gyrase, subunit beta [Variovorax paradoxus S110] gi|239799599|gb|ACS16666.1| DNA gyrase, B subunit [Variovorax paradoxus S110] Length = 874 Score = 822 bits (2123), Expect = 0.0, Method: Composition-based stats. Identities = 385/849 (45%), Positives = 528/849 (62%), Gaps = 53/849 (6%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++SY SI IL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D Sbjct: 30 TPADTSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDD 89 Query: 64 ITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 I VT++ D S +V+DNGRGIPT D H E SA+E+ +T LHAGGKFNQ SYKVSG Sbjct: 90 IVVTIHTDNSISVTDNGRGIPTGVKMDDKH-EPKRSASEIALTELHAGGKFNQNSYKVSG 148 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAG 166 GLHGVGVS VNALS L+L ++REG I+E+ F G + +P+ + G Sbjct: 149 GLHGVGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLIETVNGVEVSPMRIIGET- 207 Query: 167 NDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY 225 + GTEV FLP ++IF DF+Y+ L RLRELSFLN+ V+I L D+RS + Sbjct: 208 DKRGTEVHFLPDTEIFKENADFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSG 265 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRD----------NISIDLAMRWNDGYHENVLC 275 GG++ FV ++++ K L + G + +I +++AM+WN GY+E VLC Sbjct: 266 AGGVKGFVDFINKGKTVLHPNVFYAMGEKPADTYGGIPGTHIGVEVAMQWNSGYNEQVLC 325 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 FTNNIPQ+DGGTHL+GLR+A+TR I Y+E++ +KK K V GDD REG VLS+K+P Sbjct: 326 FTNNIPQRDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVP 385 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+FSSQTK+KLVSSEVR+ VE V L+ +L+E P +AKII K+++A+ R+AAR+A Sbjct: 386 EPKFSSQTKDKLVSSEVRAPVEDIVGRLLTDYLQERPNDAKIICGKIVEAARAREAARKA 445 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 R++TRRKGVLD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ QAILPLRG Sbjct: 446 REMTRRKGVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRG 505 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGI----------GQDSFDINKLRYHKIIIMTD 505 KILNVE+AR++K+L+S EI T+ITALGTGI G D F++ KLRYH+IIIMTD Sbjct: 506 KILNVEKARYEKLLTSNEILTMITALGTGIGRAGATSAGGGADDFNVAKLRYHRIIIMTD 565 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK QY+KD +L+ +L+ Sbjct: 566 ADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLK 625 Query: 566 QSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 +L + + +S + L + +I D + + Sbjct: 626 VALKDASIETGGPNSTTLSGDTLAELARKHQLAEAVIARLRNFMDAEALRAIADGVALDL 685 Query: 625 ESDQEINVSLASKLANRLNF----IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 ++ S + A + + + + + + R G + VL Sbjct: 686 DTTPAAEASAVALQAKLRELNTTGVPAEVSSEFDARTDKPLLRISRRHHGNIKSSVLTQD 745 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGD-----KIKITGPCSLLDTIFSIGRKGIS 735 + +N + + + G+ + K+ + + S Sbjct: 746 FVHGADYAALAEAANTFRNLLSSEGATVRRGEGERAKEEKVADFRIAMKWLIGQAENATS 805 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMN +QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N Sbjct: 806 RQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQN 865 Query: 796 SLP-SALDI 803 +L + +D+ Sbjct: 866 ALRAANIDV 874 >gi|15616640|ref|NP_239852.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132907|sp|P57126|GYRB_BUCAI RecName: Full=DNA gyrase subunit B gi|25292797|pir||B84931 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B [imported] - Buchnera sp. (strain APS) gi|10038703|dbj|BAB12738.1| DNA gyrase subunit B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 803 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 371/807 (45%), Positives = 543/807 (67%), Gaps = 15/807 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + YD+ +I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L GY I V Sbjct: 2 KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPTD+H EE ISAAEVI+T LH+GGKF+ SY++SGGLHGVG+S Sbjct: 62 TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVILTVLHSGGKFDNASYQISGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I + Y+ + +G +NPL + G+ T + F PS F + Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENPLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS++ I L + + + YKGGI+AF+ +L+ K P+ Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR + ++E Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G+ +Y+K++E + Y I +L + + D+ + K I ++I Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598 Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657 ++ + + + + D EI LA LN + +++ +I Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKENLDKNI 658 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I + R A ++ + + S ++ + + + +G KI Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 + + ++G+ +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMG+ VEPRR+FI+ N+L + +D+ Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803 >gi|219681955|ref|YP_002468339.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621688|gb|ACL29844.1| DNA gyrase subunit B [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 803 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 372/807 (46%), Positives = 542/807 (67%), Gaps = 15/807 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + YD+ +I+IL+GLDAV+KRP MYIGDTD SGLHHM++E++DN+IDE+L GY I V Sbjct: 2 KNIYDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D+GRGIPTD+H EE ISAAEVIMT LH+GGKF+ SY++SGGLHGVG+S Sbjct: 62 TIHSDNSVSVKDDGRGIPTDIHPEENISAAEVIMTVLHSGGKFDNASYQISGGLHGVGIS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L+L I + Y+ + +G +N L + G+ T + F PS F + Sbjct: 122 VVNALSEKLELIIDKNKKKYQQIYRHGKPENSLSIIGTTDTTG-TYIRFWPSYKTFTNNI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLRELSFLNS++ I L + + + YKGGI+AF+ +L+ K P+ Sbjct: 181 KFQYEILSKRLRELSFLNSNIAIYL--EDNRTSIKNCYHYKGGIKAFIKFLNAKKTPIHT 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + ++D I +++AM+WN+ + EN+LCFTNNIPQKDGGTHL+G RS +TR + ++E Sbjct: 239 HIFYFRSTKDQIELEIAMQWNNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTLNLHIE 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + +KK+K ++IG+D REG T+++SIK+PDP+FSSQTK+KLVSSE RSV+ES +N+ L Sbjct: 299 REGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLINENLI 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P ++K I++K+++A+ VR+AARRAR++ ++K +LD+ +LPGKL+DC E DPK S Sbjct: 359 EYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQENDPKFS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+++FDKM+ SQE+ +LITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++I+KLRYH IIIMTDADVDGAHIRTLLLTFF+RQ+P LI G++YI +PPLY + Sbjct: 479 GKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPPLYKLK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +G+ +Y+K++E + Y I +L + + D+ + K I ++I Sbjct: 539 KGRKEKYIKNDEEMNTYQIKNALKDLVLKSEDNLIINQKLKKFKKIMSEYHYIQIIMKQS 598 Query: 606 PNHDKTFI-EQAVISGVFNCESDQEINVSLASKLANRLNFIAE-------KSEKSWHGSI 657 ++ + + + + D EI LA LN + +K+ +I Sbjct: 599 KHYFPKLVFNELIYHNHLHNLKDIEIVKEWIYTLAENLNKKDNSNNHYSIEIKKNLDKNI 658 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I + R A ++ + + S ++ + + + +G KI Sbjct: 659 FEPTIKISRYAHY--TKYDFKEEFLKSKEYLLITNLGESFKKYFSDKVLIEKSGSTYKID 716 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 + + ++G+ +QRYKGLGEMN QLW TT+NP+TR++L+V I DA A++LF Sbjct: 717 SIKNTWKWLIKQSKRGLFIQRYKGLGEMNPEQLWNTTMNPETRNMLQVTIKDAVSANNLF 776 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 + LMG+ VEPRR+FI+ N+L + +D+ Sbjct: 777 NTLMGEAVEPRRQFIENNALKAENIDV 803 >gi|78355050|ref|YP_386499.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217455|gb|ABB36804.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 797 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 357/805 (44%), Positives = 501/805 (62%), Gaps = 10/805 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Q SYDA +I +L+GL AV+ RP+MYIG TD GLHH++YEV+DN+IDE++ GY Sbjct: 1 MTNETQKQSYDAANITVLEGLSAVRMRPAMYIGSTDS-RGLHHLVYEVVDNSIDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D +TV L++D S TV DNGRGIP D+H +EG A EV+MT LHAGGKF+ SYKVSGGL Sbjct: 60 CDKVTVKLHLDNSVTVIDNGRGIPVDIHPKEGRPAVEVVMTVLHAGGKFDNDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS +L++ ++R+G Y F G+ L G + GT + F P + Sbjct: 120 HGVGVSCVNALSEYLEVTVRRDGYKYHHRFERGVPVKELERVGET-DLRGTTIRFRPDEE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F++D L+ R EL++LN +++ ID+R+ + Y+GGI FV L+ + Sbjct: 179 IFETNQFSFDILKKRFEELAYLNPGLEVEFIDERTGDTAS--FHYEGGIREFVKNLNSGE 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I G DN+ +D A+++N GY EN+L F NNI K+GGTHL+G ++ALTR I Sbjct: 237 GGVHS-IIFASGESDNVMVDFALQYNAGYKENMLTFANNIRTKEGGTHLAGFKTALTRAI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y++ S KK K + GDD REG T V+S+K+P+P+F QTK KL +SEV +V V Sbjct: 296 NNYIQNSDLPKKLKVKLSGDDVREGLTGVVSVKLPNPQFEGQTKTKLGNSEVAGIVSGLV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ + E+P +AK+I++K +DA+ RDAAR+A+DL RRKG L +LPGKLADC + Sbjct: 356 YENLNTYFGENPKDAKLIIEKAVDAARARDAARKAKDLVRRKGALSDNALPGKLADCQSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SELF+VEGDSAGGSAKQGR+ QAILPLRGKILNVE+ RFDKML+++E+ LITA Sbjct: 416 DPSESELFIVEGDSAGGSAKQGRNPSTQAILPLRGKILNVEKTRFDKMLANKEVKALITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G GIG++ D KLRYHKI+IMTDADVDGAHIRTLLLTFF+RQ P LI G LYI +PP Sbjct: 476 MGAGIGEEDIDYGKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQYPELIDRGHLYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 L+ + K +++KDE L YL+ + +++++ + + + + + + I+ Sbjct: 536 LFRVYNSKFERFIKDETELNTYLLER-IAKDVVIEAHNGMEFRETQILDLLKAIRFINAR 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 I D + A + + L + S S Sbjct: 595 IADVENVGIGRNLFLAFLEYGEKLSPQFFEAPEF-NGFGTYLQEKGYSVQTSVDESGLER 653 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTILSLICNGDKIKITGP 719 + ++ + + S K ++ + G++ ++ Sbjct: 654 RVYLE-FEDSNGHKTRIGNEFFNSKMYKQPYDSMADMRRICGGFSFVVDRKGERTEVENI 712 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LLD + RKGI++QRYKGLGEM+A QLW TT+NP+ R LL+V++ DA +A+++F + Sbjct: 713 FVLLDHVLQEARKGINIQRYKGLGEMDAEQLWVTTMNPENRVLLQVQVDDAEEANEIFEQ 772 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRREFI N+L LDI Sbjct: 773 LMGDRVEPRREFIVRNALSVQELDI 797 >gi|255003158|ref|ZP_05278122.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Puerto Rico] gi|255004287|ref|ZP_05279088.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Virginia] Length = 793 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 408/802 (50%), Positives = 551/802 (68%), Gaps = 20/802 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GLDAVKKRP MYIGDTD SGLHHM YEV+DNAIDE+L G+ + I + + Sbjct: 3 SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 63 AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSSWL+L I +EG Y M F NG +PL + G G+ GT V+F+PSSD+FS DF+ Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSDVFSHTDFS 182 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243 Y TL++R+RELS LNS+V I+L D R E G AFV YLDR+K P+ Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242 Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + S IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + + Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V + Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS+ E +P A +V++V+ ++ R+AAR+AR++ + KG LD A+LPGKLADC E+ P Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SELF+VEG+SAGGSAKQGR R QA+L LRGKILNVER D+MLSS EI +LITA+G Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 + IG SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M +I G+LYI +PPLY Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TR + Y+K++E+L DY++ + L S +L++ + ++I + K Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661 + + E ++ ++ + + +A LN + SE W+ ++ Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I + R+++G+ +++ + + S + + IE+ + +L ++K+ PC+ Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L ++ GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770 Query: 782 GDEVEPRREFIQENSLPS-ALD 802 GD VEPRR+FI +N+L +D Sbjct: 771 GDLVEPRRDFINDNALRVENID 792 >gi|218781946|ref|YP_002433264.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01] gi|218763330|gb|ACL05796.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01] Length = 812 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 366/815 (44%), Positives = 522/815 (64%), Gaps = 22/815 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A++I++L+GL+AV+KRPSMYIG+ E GLHH++YEV+DN+IDE++ GY D I V Sbjct: 2 TQEYTAENIKVLQGLEAVRKRPSMYIGNVSTE-GLHHLVYEVVDNSIDEAMAGYCDHIQV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S TV DNGRGIPT +HK EGI A EV+M +LHAGGKF+ +YKVSGGLHGVGVS Sbjct: 61 TIHEDNSVTVEDNGRGIPTGIHKTEGIPAVEVVMCKLHAGGKFDNATYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS +L++ I + G IY ++ G + L V G GT++ F P + I + +D Sbjct: 121 VVNALSDFLEVEIYQGGEIYYQTYSKGGKTSELEVIGKTK-KRGTKIHFAPDTTIMTDED 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 + Y L RLREL+FLN+ ++I+L D+RS E +E YKGGI +FV YL+R + L Sbjct: 180 YQYAILSKRLRELAFLNAGIKITLEDERSDEEKEE-FLYKGGIISFVEYLNRSRTTLH-K 237 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G++ NI I++A+++ + E++L F NNI +GG+HL G ++ALTR I Y Sbjct: 238 PIFMAGAKSNIEIEVALQYTTAFSESILTFANNINTAEGGSHLIGFKAALTRTINQYASS 297 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 +K + + GDD REG T+++SI++PDP+F QTK KL +SEV+ +VES VN+ L A Sbjct: 298 DNVAKNAQTKISGDDVREGLTAIVSIRIPDPQFEGQTKTKLGNSEVKGLVESLVNEKLGA 357 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P AK +V + ++A+ R+AARRARDL R+KG L+ ++LPGKLA+C +PK E Sbjct: 358 FFEENPSIAKKMVMRAVEAARAREAARRARDLARKKGALNDSTLPGKLAECQISEPKLRE 417 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LFLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ARFDK+L S EI +ITALGTG+G Sbjct: 418 LFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKILQSDEIKNMITALGTGVG 477 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + +DI K+RYHK+IIMTDADVDG+HIRTLLLTFF+RQ+P ++ GFLYI +PPLY + + Sbjct: 478 AEEYDIKKIRYHKVIIMTDADVDGSHIRTLLLTFFYRQLPEILDEGFLYIAQPPLYRVGK 537 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK+ +Y+KD++ + +YL+ + ++++ + F+ D + ++ Sbjct: 538 GKAAKYLKDDQEMSEYLLRRICESRSIRRTTEDKPMAEHQMYLFLCDLTEYVTTLQRLDR 597 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + VI ++ + N + E SE + +++V Sbjct: 598 RGIPADMAEEVIKAGIISKTGLRDEARMIELRNNLIAKGYEVSELDYSDERRVYELMVTP 657 Query: 667 I-------------ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-- 711 + E + I+S + + S R + + G Sbjct: 658 LPKAQGQGDTSEVSIYDKLEPIKIGRGFIYSSDFQKCAVLSKRALDANGDAFVVWSRGKD 717 Query: 712 --DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +++ LL + +KGIS+QRYKGLGEMN QLWETT++P+ R L++VK+ D Sbjct: 718 EEKTVELPNKEELLHHLMEESKKGISLQRYKGLGEMNPDQLWETTMDPEKRRLVKVKVED 777 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 A + D++F LMGDEVEPRR+FIQ N+L LDI Sbjct: 778 AIETDEMFRLLMGDEVEPRRDFIQSNALEVTQLDI 812 >gi|56416812|ref|YP_153886.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries] gi|254995014|ref|ZP_05277204.1| DNA gyrase subunit B [Anaplasma marginale str. Mississippi] gi|56388044|gb|AAV86631.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries] Length = 793 Score = 820 bits (2117), Expect = 0.0, Method: Composition-based stats. Identities = 407/802 (50%), Positives = 550/802 (68%), Gaps = 20/802 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GLDAVKKRP MYIGDTD SGLHHM YEV+DNAIDE+L G+ + I + + Sbjct: 3 SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 63 AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSSWL+L I +EG Y M F NG +PL + G G+ GT V+F+PSS +FS DF+ Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSAVFSHTDFS 182 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243 Y TL++R+RELS LNS+V I+L D R E G AFV YLDR+K P+ Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242 Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + S IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + + Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V + Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS+ E +P A +V++V+ ++ R+AAR+AR++ + KG LD A+LPGKLADC E+ P Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SELF+VEG+SAGGSAKQGR R QA+L LRGKILNVER D+MLSS EI +LITA+G Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 + IG SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M +I G+LYI +PPLY Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TR + Y+K++E+L DY++ + L S +L++ + ++I + K Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661 + + E ++ ++ + + +A LN + SE W+ ++ Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I + R+++G+ +++ + + S + + IE+ + +L ++K+ PC+ Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L ++ GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770 Query: 782 GDEVEPRREFIQENSLPS-ALD 802 GD VEPRR+FI +N+L +D Sbjct: 771 GDLVEPRRDFINDNALRVENID 792 >gi|239904642|ref|YP_002951380.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1] gi|239794505|dbj|BAH73494.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1] Length = 804 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 355/813 (43%), Positives = 497/813 (61%), Gaps = 19/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +YDA SI +L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDES+ GY Sbjct: 1 MSQDKTPQAYDASSITVLEGLSAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDESMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I +T+++D S TVSDNGRGIP D+H +EG A EV+MT LHAGGKF+ +YKVSGGL Sbjct: 60 CDRIGITIHLDNSVTVSDNGRGIPVDIHPKEGRPAVEVVMTVLHAGGKFDNDAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ ++R G + + G L V G A +TGT + FLP + Sbjct: 120 HGVGVSVVNALSEYLEVTVRRGGKKHHQRYERGAPVTALTVIGEAE-NTGTTIRFLPDEE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF FN++TL R EL++LN +++ D+R+ E GG+ FV+ L+ + Sbjct: 179 IFETSQFNHETLAKRFEELAYLNRKLELDFRDERTNERVTYRF--DGGLNRFVTDLNAGE 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I QG + I +D A+++N Y E VL F NNI ++GGTHL G ++ALTR I Sbjct: 237 QVIH-EIIEGQGEIEGIMVDFALQYNANYKEEVLTFANNIRTREGGTHLQGFKTALTRAI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EK+ KK K+ + GDD REG T+V+S+K+P P+F QTK KL +SEV +V V Sbjct: 296 NTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVAKIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++ EE+P +AK IV+K +DA+ R+AAR+A++L RRKG L SLPGKLADC + Sbjct: 356 FEAVNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKLADCQSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P++SELF+VEGDSAGGSAKQGR QAILPLRGKILNVER R DKML ++EI LITA Sbjct: 416 KPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEIRNLITA 475 Query: 481 LGTGIGQDSFDIN--------KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 +G + +LRYHKI+IMTDADVDGAHIRTLLLTFF+R+ LI NG Sbjct: 476 IGPTPAMGDEESEEKEAENLARLRYHKIVIMTDADVDGAHIRTLLLTFFYRRYEKLILNG 535 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 ++YI +PPLY + +G +++KD+E L +L+ + E + S L N I+ Sbjct: 536 YVYIAQPPLYRVFKGDFERFIKDDEELSLFLMGRI--GEDVSVASGETTFSGESLTNLIE 593 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ +++ + +++S + V L LA L+ I + + Sbjct: 594 RIRFLEARVREAGSYGLPEELLVSLLSYP-RLAASDFAGVDLPDGLAEHLSAIG-YTVAT 651 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN-YLTILSLICNG 711 ++ L Q + + S + + ++ Sbjct: 652 EVEELDEERRLYAVFVSPNQARHRIAVEFFSSRIYRRAHETYAELTTLCPTQPFAITRKE 711 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + ++ G L + KGI++QRYKGLGEMN QLWETT+NP+ RS L+V+I D Sbjct: 712 ETREVGGFFELCRALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVRIEDMD 771 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +AD +FS+LMG++VE RR FI+ N+L LDI Sbjct: 772 EADSIFSQLMGEKVENRRNFIERNALSVRELDI 804 >gi|116619148|ref|YP_821304.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076] gi|116222310|gb|ABJ81019.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076] Length = 815 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 370/805 (45%), Positives = 506/805 (62%), Gaps = 15/805 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YD+ SI++L+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L GYA I VT++ Sbjct: 15 YDSSSIKVLEGLEAVRLRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGYATHIEVTIH 73 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S TV D+GRGIP +H+EEG+SAA+V+MT+LHAGGKF+ SYKVSGGLHGVGVS VN Sbjct: 74 DDNSVTVEDDGRGIPVGIHEEEGVSAAQVVMTKLHAGGKFDSNSYKVSGGLHGVGVSCVN 133 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS L+L I REG + + G LV G AG TGT VTF P S I V FNY Sbjct: 134 ALSEKLELEIWREGYTWTQEYSCGKPKADLVRAGKAGKRTGTRVTFKPDSTIMEVAVFNY 193 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 DTL RLREL+FLN ++I+L D+R + Y+GGI F+ +L+R K L + PI Sbjct: 194 DTLAQRLRELAFLNKGLKITLTDERVDPEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIH 253 Query: 250 IQGSRDN-----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + R+ I++++A+++ND Y ENV F NNI DGGTHLSG RSALTR I ++ Sbjct: 254 FEAEREMPEKGTITMEVALQYNDAYSENVFSFANNINTVDGGTHLSGFRSALTRTINAFG 313 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K+ K K ++ GDD REG T+V+S+K+P P+F QTK KL +S++ + FVND L Sbjct: 314 QKNGLFKDVKENLSGDDVREGLTAVVSVKVPQPQFEGQTKGKL-NSDIAGYMTQFVNDKL 372 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + +++ + IV K ++AS R+AAR+ARDLTRRKG LD LPGKLADC E+DPK Sbjct: 373 SEYFDKNSAVGRKIVGKAIEASRAREAARKARDLTRRKGALDSGGLPGKLADCQEKDPKL 432 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 ELFLVEG+SAGG+AKQGR R QAILPL+GKILNVE+AR+DKML +EI +ITALGTG Sbjct: 433 CELFLVEGESAGGTAKQGRERRFQAILPLKGKILNVEKARYDKMLGHEEIRCMITALGTG 492 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FD+ KLRY KIIIMTDADVDG+HIRTLLLTFFFR M LI G +YI +PPLY I Sbjct: 493 IGKDDFDVAKLRYDKIIIMTDADVDGSHIRTLLLTFFFRHMNELITRGKVYIAQPPLYRI 552 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK-----GVISKNDLRNFIDDALKIDK 599 +GKS +Y+KDE+ ++ ++ + + +LR F+ + + + Sbjct: 553 KKGKSEKYIKDEKEFTKEIMRRATENLTVEIHSNGDGKPKSSLEGQELRTFLLNLDEFQQ 612 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + + + + + + + + L + K Sbjct: 613 IFHKVERRLRDSRAVDVLTNVDLHVD--NKAEFQVEANLKPVFEAMKAKGLNPQMKKDEE 670 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + + + R + I + ++ N + Sbjct: 671 HSAWAVVFHDSTGAERSVGLQLAAQPEYRRFRALARTIAKFNEPPFVVVKNEHRDAQPDW 730 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LL+ + + G+K S+QRYKGLGEMNA QL +TT+NP+ R+LL V++ DA Q +++FS Sbjct: 731 VELLEYVKNEGKKDASVQRYKGLGEMNAEQLADTTMNPEKRTLLEVRLEDAVQCEEIFST 790 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMG++VE RR+FI+EN+L LD+ Sbjct: 791 LMGEDVESRRKFIEENALDVKNLDV 815 >gi|218887173|ref|YP_002436494.1| DNA gyrase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758127|gb|ACL09026.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 798 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 362/810 (44%), Positives = 490/810 (60%), Gaps = 19/810 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +Y ADSI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY Sbjct: 1 MTTPTG-QTYTADSITILEGLAAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L++D S TVSDNGRGIP DLH +EG A EV+MT+LHAGGKF+ +YKVSGGL Sbjct: 59 CSRIVVKLHLDNSVTVSDNGRGIPVDLHPKEGKPAVEVVMTKLHAGGKFDNDAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS WL++ ++R+G + M F G + PL G + N GT V F P + Sbjct: 119 HGVGVSCVNALSEWLEVTVRRDGKRHRMRFARGAVQGPLEFLGESANH-GTTVHFKPDEE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF ++Y+TL+ R ELS+LN ++I D+RS E GGI FV L+ + Sbjct: 178 IFETVQYSYETLRKRFEELSYLNKGLEIEFTDERSAETH--VFRADGGIRQFVKDLNSGE 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +G D +++D A+++N GY ENVL F NNI K+GGTHL+G ++ALTR I Sbjct: 236 SGIHPIID-GEGVTDGVTVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAI 294 Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y++ K + GDD REG TSV+S+K+P P+F QTK KL +SE+ +V Sbjct: 295 NGYIKGQPDLVKKMKGTVLSGDDVREGLTSVVSVKLPQPQFEGQTKTKLGNSEIAGLVAG 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D L+ E+P +A++I+ K +DA+ RDAARRA++L RRKG L SLPGKLADC Sbjct: 355 IVYDKLNVHFGENPKDARLIIDKAVDAARARDAARRAKELVRRKGALSDNSLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP +SELF+VEGDSAGGSAKQGR QAILPLRGKILN ER RFDKML+++E+ LI Sbjct: 415 SKDPAESELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D D +KLRYHK++IMTDADVDGAHIRTLLLTFFFRQ LI G LYI + Sbjct: 475 TAMGAGIGEDDTDYDKLRYHKVVIMTDADVDGAHIRTLLLTFFFRQYQELIDRGHLYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + + +++KD+ L +L+ + +S +I + +S + D+ + + + Sbjct: 535 PPLYRVHSSRFEKFIKDDPELNAFLLER-ISNDITIRTESGCAFTGPDIVSLMKAIELVS 593 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS---LASKLANRLNFIAEKSEKSWHG 655 ++D + A I E L L +R ++ + E Sbjct: 594 AKVRDVENIGIARELFLAFIEYQTRIEPQWFTEEDPNGLRQWLGDRGYTVSAEHE----- 648 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714 + + + S + ++ ++ G+ Sbjct: 649 DTDEDSRTFVVFEDTNGHRTRVGAEFFHSKMYRQAWDALADIRTRCGSLRCTVDRKGETS 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L + RKGI++QRYKGLGEMN QLW TT+NP+ R+LLRV + DA +A Sbjct: 709 DAEDIFDLFRLVLDEARKGINIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVDDAEEAS 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + F +LMGD VEPRREFI+ N+L LDI Sbjct: 769 EAFEQLMGDRVEPRREFIERNALSVQDLDI 798 >gi|222475176|ref|YP_002563592.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida] gi|222419313|gb|ACM49336.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida] Length = 793 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 408/802 (50%), Positives = 551/802 (68%), Gaps = 20/802 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GLDAVKKRP MYIGDTD SGLHHM YEV+DNAIDE+L G+ + I + + Sbjct: 3 SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 63 AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSSWL+L I +EG Y M F NG +PL + G G+ GT V+F+PSSD+FS DF+ Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAISPLKMVGECGSKKGTRVSFMPSSDVFSHTDFS 182 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243 Y TL++R+RELS LNS+V I+L D R E G AFV YLDR+K P+ Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242 Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + S IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + + Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V + Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS+ E +P A +V++V+ ++ R+AAR+AR++ + KG LD A+LPGKLADC E+ P Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SELF+VEG+SAGGSAKQGR R QA+L LRGKILNVER D+MLSS EI +LITA+G Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 + IG SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M +I G+LYI +PPLY Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TR + Y+K++E+L DY++ + L S +L++ + ++I + K Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661 + + E ++ ++ + + +A LN + SE W+ ++ Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I + R+++G+ +++ + + S + + IE+ + +L ++K+ PC+ Sbjct: 651 ITILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L ++ GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770 Query: 782 GDEVEPRREFIQENSLPS-ALD 802 GD VEPRR+FI +N+L +D Sbjct: 771 GDLVEPRRDFINDNALRVENID 792 >gi|269958766|ref|YP_003328553.1| DNA gyrase subunit B [Anaplasma centrale str. Israel] gi|269848595|gb|ACZ49239.1| DNA gyrase subunit B [Anaplasma centrale str. Israel] Length = 793 Score = 818 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 406/802 (50%), Positives = 550/802 (68%), Gaps = 20/802 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GLDAVKKRP MYIGDTD SGLHHM YEV+DNAIDE+L G+ + I + + Sbjct: 3 SYNASAITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS ++DNGRGIP D+H+EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 63 AGDGSIAITDNGRGIPIDIHEEEGVSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSSWL+L I +EG Y M F NG +PL + G G+ GT V+F+PSS +FS DF+ Sbjct: 123 NALSSWLELTIWKEGREYFMRFENGAAVSPLKMVGECGSKKGTRVSFMPSSGVFSHTDFS 182 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKPL 243 Y TL++R+RELS LNS+V I+L D R E G AFV YLDR+K P+ Sbjct: 183 YSTLENRVRELSLLNSNVVITLKDMRESPAVESNFGNSLEEGSSGTAAFVEYLDRNKTPV 242 Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + S IS++L+M WND Y+EN+LCFTNNI QKDGGTHL+G RSALTR + + Sbjct: 243 TKVISLKGMMSGYEISVELSMCWNDSYYENMLCFTNNIRQKDGGTHLAGFRSALTRCVNN 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y KK K ++IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES V + Sbjct: 303 YATSEGCLKKAKVAIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIVFE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS+ E +P A +V++V+ ++ R+AAR+AR++ + KG LD A+LPGKLADC E+ P Sbjct: 363 KLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKNKGGLDFAALPGKLADCQEKSP 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SELF+VEG+SAGGSAKQGR R QA+L LRGKILNVER D+MLSS EI +LITA+G Sbjct: 423 ELSELFIVEGNSAGGSAKQGRDRRYQAVLSLRGKILNVERVGLDRMLSSSEIASLITAIG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 + IG SFD++K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M +I G+LYI +PPLY Sbjct: 483 SSIGIGSFDVSKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMKDIISEGYLYIAQPPLY 542 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +TR + Y+K++E+L DY++ + L S +L++ + ++I + K Sbjct: 543 KLTRHRKDTYIKNDEALSDYIVG---NATRSLVLSGGAEHSGAELQSILRKCMRIANVTK 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD- 661 + + E ++ ++ + + +A LN + SE W+ ++ Sbjct: 600 AYARMIPQEVFESLIVQ-------YKKCGLGSPADMAAHLNRVF--SEYQWNVEMSEDGM 650 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + + R+++G+ +++ + + S + + IE+ + +L ++K+ PC+ Sbjct: 651 LTILRLSQGMVDKYAIGADFVHSRDVQNIVSTLDGIEDIFGADTTLSAKDYQMKVRSPCT 710 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L ++ GRK +++QR+KGLGEMNA QLW+TTLNP+TR+LL+VKI+D + AD +FS LM Sbjct: 711 LASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPETRTLLKVKISDYAAADSIFSVLM 770 Query: 782 GDEVEPRREFIQENSLPS-ALD 802 GD VEPRR+FI +N+L +D Sbjct: 771 GDLVEPRRDFINDNALRVENID 792 >gi|301165375|emb|CBW24946.1| DNA gyrase subunit B [Bacteriovorax marinus SJ] Length = 817 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 358/810 (44%), Positives = 514/810 (63%), Gaps = 19/810 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YDAD I++L+GL+AV+KRP MYIGDT GLHH +YE++DNA+DE+L GY I + Sbjct: 13 EKYDADQIKVLEGLEAVRKRPGMYIGDT-AVRGLHHCVYEIVDNAVDEALAGYCTEIKII 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGV 125 +++D S TV DNGRGIPTD+H EG SAAE++ T+LHAGGKF + +YKVSGGLHGVG Sbjct: 72 IHVDNSVTVVDNGRGIPTDMHPTEGCSAAELVYTKLHAGGKFNEDGGAYKVSGGLHGVGA 131 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS 183 +VVNALS W+K+ IK+ G ++ + F G PL V G TGT VTF P ++IF Sbjct: 132 AVVNALSKWVKMEIKKHGKLHAVKFERGEAVAPLAVIGDLEDPKITGTAVTFKPDNEIFE 191 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +FNYDTL +R RE++FLN + ISL D+RS + Y+GGI FV+YL+R K + Sbjct: 192 VHEFNYDTLANRFREMAFLNKGLNISLKDERSDKK--DVFCYEGGIAEFVTYLNRAKTAV 249 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I +R++ +++AM+W D Y E + + N I GGTH+SG ++A+TR + +Y Sbjct: 250 HKKVIAFSQAREDYEVEVAMQWTDSYSEVLSGYANAICTPGGGTHISGFKTAITRVLNAY 309 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + + K K ++ GDD REG T+++SIK+P+ +F QTK+KL +SEV +V S V + Sbjct: 310 AKDNNLLKGLKSNLTGDDMREGLTAIISIKLPELQFEGQTKDKLGNSEVEGIVNSLVGEQ 369 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +LEE+P AK I+KK +DA+ R+AAR+AR+LTRRK L ++ LPGK+ADC E+DP Sbjct: 370 LKQYLEENPSLAKTIIKKSVDAAAAREAARKARELTRRKSALVVSGLPGKMADCQEKDPA 429 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +SE+++VEGDSAGGSAKQGR R+ QA+LPL+GKILNVE+AR+DKML++ EI ++ A+GT Sbjct: 430 RSEIYIVEGDSAGGSAKQGRDRKTQAVLPLKGKILNVEKARYDKMLANNEIKMIVQAMGT 489 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G++ FDI KLRYHKI+IMTDADVDG+HIRTL+LT +RQ P L+ NG++YI +PPL+ Sbjct: 490 GVGKEQFDIKKLRYHKIVIMTDADVDGSHIRTLILTLLYRQFPELVENGYVYIAQPPLFK 549 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +GK+ +Y+KDE+ LE +L SL + + +S ++ R ++ + ++ Sbjct: 550 YKKGKAERYLKDEKELEAFLTTNSLQDTVIK--ADGKDLSTDEARVLVNKYRNYTRTVES 607 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKSEKSWHGSINNS- 660 + + D + Q + + ++ + KL + K++ SI Sbjct: 608 YDIHFDSLLLRQIIERSHITADILKDKVALQAELDKLTAYFKEQEVNTLKTYTFSITEDL 667 Query: 661 -----DILVKRIARGVQEQFVLEGSSIFSFGS-KYKRIFSNRIEENYLTILSLICNGDKI 714 I + G ++F L + S + Sbjct: 668 AHQSNQININVRTTGRTKKFKLNTYFLESPDYADLLNGYDGMKSYVNAKFSIDREKAGVK 727 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + + I G++G +QRYKGLGEMN QLWETT+NPD R+LL+V+I D +AD Sbjct: 728 EFDSLNEFAEHIIVDGKQGAYIQRYKGLGEMNPEQLWETTMNPDNRTLLQVRIEDTIEAD 787 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +FS LMGD VEPRR+F++EN+L LD+ Sbjct: 788 QVFSVLMGDNVEPRRQFVEENALNVRNLDV 817 >gi|91785916|ref|YP_546868.1| DNA gyrase subunit B [Polaromonas sp. JS666] gi|91695141|gb|ABE41970.1| DNA gyrase subunit B [Polaromonas sp. JS666] Length = 874 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 382/840 (45%), Positives = 520/840 (61%), Gaps = 45/840 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L G+ D I Sbjct: 38 ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIV 97 Query: 66 VTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 VT++ D S +V+DNGRGIPT + E SAAE+ +T LHAGGKFNQ SYKVSGGLH Sbjct: 98 VTIHTDNSISVTDNGRGIPTGIKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLH 157 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNPLVVTGSAGNDT 169 GVGVS VNALS L+L I+R+G ++ M F G + +P+ + Sbjct: 158 GVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIIEQINGVDVSPMK-VMDHTDKR 216 Query: 170 GTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 GTEV FLP ++IF + F+Y+ L RLRELSFLN+ V+I L D+RS + GG Sbjct: 217 GTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFAGAGG 274 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQK 283 ++ FV ++++ K L + G R NI +++AM+WN GY E VLCFTNNIPQ+ Sbjct: 275 VKGFVEFINKGKTVLHPNVFAAMGDRQSDQGTNIGVEVAMQWNSGYSEQVLCFTNNIPQR 334 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHL+GLR+A+TR I Y++ S +KK K V GDD REG VLS+K+P+P+FSSQT Sbjct: 335 DGGTHLTGLRAAMTRVINKYIDDSELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQT 394 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEVR VE V+ L +L+E P +AKIIV K+++A+ R+AAR+ARD+TRRKG Sbjct: 395 KDKLVSSEVRGPVEDIVSRLLHDYLQERPNDAKIIVGKIIEAARAREAARKARDMTRRKG 454 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 VLD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE+A Sbjct: 455 VLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKA 514 Query: 464 RFDKMLSSQEIGTLITAL----------GTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 R++K+L+S EI TLITAL G G D F++ KLRYH+IIIMTDADVDGAHI Sbjct: 515 RYEKLLTSNEILTLITALGTGIGKAGGIGGTPGTDDFNVAKLRYHRIIIMTDADVDGAHI 574 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 RTLLLTFF+RQMP L+ G +YI +PPLY + GK QY+KD +L+ +L+ +L + Sbjct: 575 RTLLLTFFYRQMPELVERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFLLRIALKDASV 634 Query: 574 LF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 D+ V++ + L + +I D + N ++ + Sbjct: 635 QTGADASTVLTGDTLAELARKHQLAESVIARLRGFMDAEALRAIADGVSLNLDTVADAEA 694 Query: 633 SLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 S + LN ++ + + + + R G + V+ + Sbjct: 695 SAVTLQVKLRELNTTGAPADVAGEFDTRTDKPILRISRRHHGNVKSSVITQDFVHGADYA 754 Query: 689 YKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 + ++ + K++ + + + QRYKGLGE Sbjct: 755 TLADAAATFRGLISEGAKVMRGEGERQKEEKVSDFRQAMAWLIGQAENATARQRYKGLGE 814 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 MN +QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEPRREFI++N+L + +D+ Sbjct: 815 MNPAQLWETTMDPQVRRLLRVQIDDAIEADHVFTMLMGDEVEPRREFIEQNALRAANIDV 874 >gi|121607001|ref|YP_984330.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2] gi|120595970|gb|ABM39409.1| DNA gyrase subunit B [Polaromonas naphthalenivorans CJ2] Length = 874 Score = 818 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 393/841 (46%), Positives = 526/841 (62%), Gaps = 47/841 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y SIQIL+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDESL G+ D I Sbjct: 38 ASEAYGEGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDESLAGHCDDIL 97 Query: 66 VTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 VT++ D S +V DNGRGIPT D H E SAAE+ +T LHAGGKFNQ SYKVSGGL Sbjct: 98 VTIHTDNSVSVVDNGRGIPTGVKMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGL 156 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING------------ILDNPLVVTGSAGND 168 HGVGVS VNALS L+L I+R+G ++ M F G + +P+ V G + Sbjct: 157 HGVGVSCVNALSKMLRLTIRRDGKVHVMEFSRGFVQNRIVEMANGVEVSPMKVMGPT-DK 215 Query: 169 TGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 GTEV FLP +DIF + F+Y+ L RLRELSFLN+ V+I L D+RS + G Sbjct: 216 RGTEVHFLPDTDIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERSGKE--DDFSGTG 273 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQ 282 G++ FV ++++ K L + G R NI +++AM+WN GY E VLCFTNNIPQ Sbjct: 274 GVKGFVEFINKGKTVLHPNVFNAMGDRQSDQGTNIGVEVAMQWNSGYSEQVLCFTNNIPQ 333 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +DGGTHL+GLR+A+TR I Y++ + +KK K V GDD REG VLS+K+P+P+FSSQ Sbjct: 334 RDGGTHLTGLRAAMTRVINKYIDDTELAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 393 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK+KLVSSEVR VE V+ L+ +L+E P +AKIIV K+++A+ R+AAR+ARD+TRRK Sbjct: 394 TKDKLVSSEVRGPVEDIVSRLLNDYLQERPNDAKIIVGKIIEAARAREAARKARDMTRRK 453 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 GVLD LPGKLADC E+DP E++LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ Sbjct: 454 GVLDGMGLPGKLADCQEKDPAMCEIYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEK 513 Query: 463 ARFDKMLSSQEIGTLITAL----------GTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 AR++K+L+S EI LITAL G G D F++ KLRYH+IIIMTDADVDGAH Sbjct: 514 ARYEKLLTSNEILILITALGTGIGKGGGVGGTPGADDFNVAKLRYHRIIIMTDADVDGAH 573 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFF+RQMP LI G +YI +PPLY + GK QY+KD +L+ +L+ +L + Sbjct: 574 IRTLLLTFFYRQMPELIERGHIYIAQPPLYKVKAGKEEQYLKDTAALDGFLLRIALKDAS 633 Query: 573 ELF-CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 D V++ + L + + +I D + N ++ + Sbjct: 634 VQTGADDSSVLTGDALGELARKHQQAESVISRLMGFMDAEALRAIADGVSLNLDTVADAE 693 Query: 632 VSLASKLAN--RLNFIAEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687 VS + A LN +E + + + + R G + VL + Sbjct: 694 VSAVALQAKLRELNTTGAPAEVAGEFDVRSDKPILRISRRHHGNVKSSVLTQDFVVGADY 753 Query: 688 KYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLG 743 ++ ++ + KI+ + + G + QRYKGLG Sbjct: 754 AVLAEAASTFHGLIGDGAKVMRGEGERRKEEKISDFRQAMRWLIGQAEHGTARQRYKGLG 813 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 EMN +QLWETTL+P R LL+V+I DA +AD +F+ LMGDEVEPRREFI++N+L + +D Sbjct: 814 EMNPAQLWETTLDPKVRRLLKVQIDDAIEADRVFTMLMGDEVEPRREFIEQNALRAGNID 873 Query: 803 I 803 I Sbjct: 874 I 874 >gi|27904523|ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076740|sp|Q89B37|GYRB_BUCBP RecName: Full=DNA gyrase subunit B gi|27903920|gb|AAO26754.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 804 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 377/806 (46%), Positives = 539/806 (66%), Gaps = 12/806 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++Y + +I+ILKGLDAVKKRP MYIG+TD +GLHHM++EV+DN+IDE+L G+ I V Sbjct: 2 KNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNIIV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S ++ D+GRGIPTD+H EEGISAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I R+ IY + NG N L + G TGT++ F P+ +IF+ Sbjct: 122 VVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYTKI-TGTKIRFWPNLEIFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FN++ L RLRELSFLNS+V I L + + + +GG++ F+ YL+++KKP+ Sbjct: 181 QFNWEILSKRLRELSFLNSNVSIYL--DDAKKHINENFYQQGGLKEFIIYLNKNKKPIHS 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 ++N+ +++AM+WN G+ EN+ C+TNNIPQ+DGGTHLSG RSALTR + +Y++ Sbjct: 239 KIFYFSSKKNNVEVEIAMQWNKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYLD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK+K ++IGDD REG T+++SIK+ DP+FSSQTK KLVSSEV+S +ES VN+ L Sbjct: 299 KEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFLM 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P E+K IV K++++S VR+AARRAR++TR+KG LD+ LPGKL+DC ERDP S Sbjct: 359 EFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQ R+R+NQAILPL+GKILNVE+AR++KMLSSQE+ TLITALG GI Sbjct: 419 EIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++ KLRYH+IIIMTDADVDG+HIRTLLLTFF+R MP +I G+LYI +PPLY +T Sbjct: 479 GKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKVT 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK--NDLRNFIDDALKIDKLIKD 603 + +Y+KD+ ++E+Y ++ +L I K + K L+ I + I + Sbjct: 539 KNNKTRYIKDKNTMENYKLSTALENTILESNTDKEIKIKCNYTLKKIISEYKIIQTIFFK 598 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS-----EKSWHGSIN 658 N + + + N +D+ + + +L + + +++ Sbjct: 599 IKDNFPLNILNEMLYHPKLNNLNDEVYVNNWINNFVIQLQKKSSSTRNYSAHITFNSKDK 658 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + L+K +++ + + I S+ + +++E + + N I Sbjct: 659 IFEPLIKIQKNAEVKEYKFDITFINSYEYQKIYSLGKKLQEMIQKNIHIKKNNKTYSIKN 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + + K + +QRYKGLGEMN QLW+TT+NP+TR +L++ + + + LF+ Sbjct: 719 FQKNFELLIQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDTTNKLFN 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPR+ FI+ +L + +DI Sbjct: 779 TLMGDSVEPRKLFIELYALKASNIDI 804 >gi|94266205|ref|ZP_01289914.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] gi|93453212|gb|EAT03670.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] Length = 804 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 361/806 (44%), Positives = 519/806 (64%), Gaps = 13/806 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N Y A+ I++L GL+ V+KRP+MYIG+T E GLHH++YEV+DN+IDE+L G+ Sbjct: 7 NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFE-GLHHLVYEVVDNSIDEALAGHCS 65 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VTL+ DGS +V DNGRGIP +H EG+SA E++M LHAGGKF+ +YKVSGGLHG Sbjct: 66 RIAVTLHKDGSVSVEDNGRGIPVGMHPTEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS IKR+G I+ + +GI ++ + V G + +G+ +TFLP +IF Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGIKESEVEVVGETEH-SGSRITFLPDPEIF 184 Query: 183 SV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + DF+Y+T+Q RLREL+FLN V+I L D+R+ E +KGG+ +FV +L+R++ Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTG--AEDEFHFKGGLRSFVEHLNRNRT 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ PI I+G +D++ +++ ++ +G++E + + NNI K+GG+H+ G R+ALT+ I Sbjct: 243 PVHAEPIFIEGEKDDVQVEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFRAALTKCIN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + + GDD REG T V+S+++P+P+F QTK KL +SEV+ +VE + Sbjct: 303 RYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVKWIVEGICH 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +S++LEEHP EA+ I+ K +DA+ R+AARRA+DL+R+KG L KLA+C + Sbjct: 363 EKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAKLAECQSKK 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++ E+FLVEGDSAGGSAKQGR R QAILPLRGKI+NVE+ARFD++L+S+EI +I AL Sbjct: 423 PEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEEIKQVIAAL 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM LI G +YI +PPL Sbjct: 483 GTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGRVYIGQPPL 542 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + ++RGK Q+ D++SL ++L Q+ SE +E+ C V++ +L + D +L+ Sbjct: 543 FRLSRGKKEQFFLDDDSLNNFLYKQA-SEMLEVHCPDGQVLAGEELVKLLHDLTIYQRLV 601 Query: 602 KDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658 N + + V + + + E+ +L +L + W S Sbjct: 602 DYMERTNLWEEIVRFLVAQDIHTADQFESQELLENLHQRLGGGKFILGNIRPCRWRPSCY 661 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 D+ K A + + +I + + Sbjct: 662 EFDVAAKDKAHLLTTV---GPQIPLQPEYRAILRQYPKIAAFLDVGFQVAVKNQQHSAAD 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LL I + KG S+QRYKGLGEMN QLW TT+NP+ R LL+V+I DA +AD++F+ Sbjct: 719 WRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVRIEDAEKADEIFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRREFIQ ++L +LDI Sbjct: 779 TLMGDKVEPRREFIQAHALEVSSLDI 804 >gi|291278436|ref|YP_003495271.1| DNA gyrase subunit B [Deferribacter desulfuricans SSM1] gi|290753138|dbj|BAI79515.1| DNA gyrase, B subunit [Deferribacter desulfuricans SSM1] Length = 789 Score = 816 bits (2109), Expect = 0.0, Method: Composition-based stats. Identities = 349/805 (43%), Positives = 511/805 (63%), Gaps = 22/805 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +SY+ +SI++L+GL+AV++RP MYIG D GLHH+IYEV+DN+IDE+ G+ I Sbjct: 1 MSKNSYNEESIKVLEGLEAVRQRPGMYIGSVD-HRGLHHLIYEVVDNSIDEASAGFCKNI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++T+++D S T+ D+GRGIP +H EV+MT LHAGGKF + +Y SGGLHGVG Sbjct: 60 SITIHIDNSVTIEDDGRGIPVGIHPTMKKPTVEVVMTTLHAGGKFEKGAYYASGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS +L++ +KR+G ++ + G L G + N TGT++ F P DIF Sbjct: 120 ISVVNALSEFLEVTVKRDGGVFFQRYEKGKPVTKLEKIGKS-NKTGTKIRFRPDIDIFED 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 DF++D LQ R REL++LN V+I+ D+R + + F +GGI ++V YL++ K L+ Sbjct: 179 LDFSHDVLQKRFRELAYLNPGVKITFNDERIDKKQ--EFFAEGGIVSYVKYLNKTKNTLL 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + P+ I+G +++S+++A +NDGY+E +L F NNI +GGTH +G ++A TR +++ Sbjct: 237 KEPVFIKGIHEDVSVEIAFTYNDGYNEQILSFVNNIHTHEGGTHEAGFKNAYTRIFNNFI 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K K S+ GDD REG ++V+S+++ DP F QTK KL S+ ++ VE+ +N L Sbjct: 297 AKNN-LLKQKVSLTGDDIREGLSAVISVRLHDPIFEGQTKGKLGSTTAKTAVENVMNSTL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + E++ KII+ K L A R+AAR+A++LTRRK L+I++LPGKLADC E+DP K Sbjct: 356 PDFFEKNINYVKIILDKALQAYRAREAARKAKELTRRKNALEISTLPGKLADCQEKDPDK 415 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +ELF+VEGDSAGGSAKQ R R QAILPL+GKI+NVE+ARFDK+LS+ EI +ITALGTG Sbjct: 416 AELFIVEGDSAGGSAKQCRDRRFQAILPLKGKIINVEKARFDKILSNDEIKAMITALGTG 475 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG +FDINK+RY KIIIMTDADVDGAHI TLLLTFF+R + +I G+LYI +PPLY + Sbjct: 476 IGHKNFDINKIRYKKIIIMTDADVDGAHITTLLLTFFYRYLREIIERGYLYIARPPLYKV 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK+ +Y+ DE+ +ED++ + S + + + ++I K Sbjct: 536 KKGKTEKYIHDEKEMEDFIFKNIIDNIEFPNISKT---SYKTILKGLKNYIQIRT--KYL 590 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA-----EKSEKSWHGSINN 659 + I +S + + L + LN KS S++ Sbjct: 591 KKGFTRELINALAEIDSLTKDSLSD--KTFVETLYDELNEKGILKPYNKSYISFNEEFEK 648 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +I+ ++ E+ ++ I S + + +I+ + +G+K Sbjct: 649 YNIIFEK----GSEKVIINSELIDSPEFRELKRNFLKIKPLGKRPFEITIDGEKSVFDTY 704 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +++++ IG KG+ +QRYKGLGEMN QLWETT++P+ R L +VKI DA AD+LFS Sbjct: 705 DEMMESLEEIGLKGVYVQRYKGLGEMNPQQLWETTVDPERRVLYKVKIEDAEAADELFSL 764 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD V PRREFI+EN+L LDI Sbjct: 765 LMGDVVGPRREFIEENALNVKNLDI 789 >gi|283852478|ref|ZP_06369746.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B] gi|283572086|gb|EFC20078.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B] Length = 806 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 349/815 (42%), Positives = 499/815 (61%), Gaps = 21/815 (2%) Query: 1 MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ + +YDA SI +L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ Sbjct: 1 MSEEKKTAPQAYDASSITVLEGLSAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I V +++DGS TVSDNGRGIP D+H +E A EV+MT LHAGGKF+ +YKVSG Sbjct: 60 GYCDRINVAVHLDGSVTVSDNGRGIPVDMHPKEHRPAVEVVMTVLHAGGKFDNDTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS +L++ ++R G Y+ + G+ + V G A +TGT + F P Sbjct: 120 GLHGVGVSVVNALSEYLEVTVRRNGKKYQQRYERGVPVTQVTVIGEAE-NTGTTIRFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF F+++TL R EL++LN ++I D R+ E GGI+ FV+ L+ Sbjct: 179 EEIFETNQFSHETLAKRFEELAYLNRGLEIDFRDDRTSERVTYRF--DGGIKRFVADLNA 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +P++ I D + +D A+++N Y E V F NNI ++GGTHL+G ++ALTR Sbjct: 237 G-EPVIHDIIEGLAEMDGVVVDFALQYNANYKEEVYTFANNIRTREGGTHLAGFKTALTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y+EK+ KK K+ + GDD REG T+V+S+K+P+P+F QTK KL +SEV +V Sbjct: 296 GINTYIEKADIPKKFKQKLTGDDVREGLTAVISVKLPNPQFEGQTKTKLGNSEVVGIVSK 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + ++ EE+P +AK IV+K +DA+ R+AAR+A++L RRKG L SLPGKLADC Sbjct: 356 IVFEAINVHFEENPKDAKAIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKLADCQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P++SEL++VEGDSAGGSAKQGR QAILPLRGKILNVER R DKML ++EI LI Sbjct: 416 SKNPEESELYIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEIRNLI 475 Query: 479 TALGTGI--------GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 TA+G +D+ + +LRYHKI+IMTDADVDGAHIRTLLLTFF+R+ LI Sbjct: 476 TAMGPTPSMGDDESEEKDNENYARLRYHKIVIMTDADVDGAHIRTLLLTFFYRRYERLIQ 535 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +G++YI +PPLY + +G +++KD+E L +L+ + + + + DL Sbjct: 536 SGYIYIAQPPLYRVFKGDFERFIKDDEELSQFLLGRIGQD--VTVASGEKRFAGADLTGL 593 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 ++ ++ I + + + G +L L L E Sbjct: 594 LERIHFLEARIHEAAT-YGLPDDLLLALLGYDKLAPSDFAAEALPQGLPAYLREKGYALE 652 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLIC 709 + + I+ Q + + S + + + + LS+ Sbjct: 653 IESEEIDDEKRLYAVFIS-ANQARHRIAVEFFSSKIYRRAHETYGQLLADCPELPLSIER 711 Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + + G L + KG+++QRYKGLGEMN QLWETT+NP+ RS L+V I D Sbjct: 712 KEESRAVAGFFDLYKALMDDALKGVNIQRYKGLGEMNPEQLWETTMNPEKRSFLQVSIED 771 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A +A+D+FS+LMG++VE RR+FI+ N+L LDI Sbjct: 772 AGEANDIFSQLMGEKVEGRRDFIERNALSVRELDI 806 >gi|303246810|ref|ZP_07333087.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ] gi|302491827|gb|EFL51707.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ] Length = 810 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 357/818 (43%), Positives = 504/818 (61%), Gaps = 23/818 (2%) Query: 1 MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS + + YDA SI +L+GL AV+KRP+MYIG TD GLHH+++EV+DN+ID Sbjct: 1 MSQDNAPQASHGPQAYDASSITVLEGLSAVRKRPAMYIGSTDS-RGLHHLVWEVVDNSID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 ES+ G+ D I VT+++D S TVSDNGRGIP D+H +E A EV+MT LHAGGKF+ ++Y Sbjct: 60 ESMAGFCDRIVVTIHLDNSVTVSDNGRGIPVDMHPKEHRPAVEVVMTVLHAGGKFDNETY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVSVVNALS +L++ ++R+G ++ + G+ PL V G A + TGT + Sbjct: 120 KVSGGLHGVGVSVVNALSEYLEVTVRRDGKKHQQRYERGVPVTPLTVIGEA-DVTGTTIR 178 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P +IF FN+DTL R EL++LN ++I D+R+ E GG++ FV+ Sbjct: 179 FKPDEEIFETNQFNHDTLVKRFEELAYLNRGLEIDYRDERTNERVTYRF--DGGLKRFVA 236 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 L+ ++ + I G D I D A+++N Y E VL F NNI ++GGTHL+G ++ Sbjct: 237 DLNAGEQTIH-DIIDGTGEIDGIVTDFALQYNANYKEEVLTFANNIRTREGGTHLAGFKT 295 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I +Y+EKS KK K+ + GDD REG T+V+S+K+P P+F QTK KL +SEV Sbjct: 296 ALTRAINTYIEKSDLPKKFKQKLTGDDVREGLTAVISVKLPGPQFEGQTKTKLGNSEVAG 355 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +V V + ++ EE+P +AK IV+K +DA+ R+AAR+A++L RRKG L SLPGKL Sbjct: 356 IVAKVVFEAMNVHFEENPKDAKSIVEKAVDAARAREAARKAKELVRRKGALSDHSLPGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC ++P++SELF+VEGDSAGGSAKQGR QAILPLRGKILNVER R DKML ++EI Sbjct: 416 ADCQSKNPEESELFIVEGDSAGGSAKQGRDPRFQAILPLRGKILNVERTRTDKMLGNKEI 475 Query: 475 GTLITALGTGIG-------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 LITA+G +++ + +LRYHKI+IMTDADVDGAHIRTLLLTFFFR+ Sbjct: 476 RNLITAMGPTPAMGEEDEEKEAENYARLRYHKIVIMTDADVDGAHIRTLLLTFFFRRYER 535 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI NG++YI +PPLY + +G +++KD+E L +L+ + + + V S L Sbjct: 536 LIENGYIYIAQPPLYRVFKGDFEKFIKDDEELSTFLMGRIGQD--VTVASGEKVFSGEAL 593 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + +++ ++ I + I ++ SD + + L L Sbjct: 594 SSLLENIRSLEARIHEAAAYGLPEEILTILLGYDRLAPSDFASHETFPQGLVPYLREKGF 653 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILS 706 + E + + IA Q + + S ++ + + E L+ Sbjct: 654 ELEIEAEEIDDEKRLYAVFIA-ANQARHRIAVEFFSSKIYRHAHETYGELLAECPEMPLT 712 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + + ++ L + KGI++QRYKGLGEMN QLWETT+NP+ RS L+V Sbjct: 713 ITRKEESRQVASFFELYKALMDDALKGINIQRYKGLGEMNPEQLWETTMNPEKRSFLQVS 772 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA A+D+F +LMG++VE RR FI+ N+L LDI Sbjct: 773 IQDAGDANDIFDQLMGEKVEGRRTFIERNALTVRELDI 810 >gi|327398178|ref|YP_004339047.1| DNA gyrase subunit B [Hippea maritima DSM 10411] gi|327180807|gb|AEA32988.1| DNA gyrase, B subunit [Hippea maritima DSM 10411] Length = 787 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 340/799 (42%), Positives = 493/799 (61%), Gaps = 16/799 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+ I++LKGL+AV+KRP+MYIG T E GLHH++YEV+DN+IDE++ GY D I V Sbjct: 2 AKYTAEDIKVLKGLEAVRKRPAMYIGGTSVE-GLHHLVYEVVDNSIDEAMAGYCDTINVY 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV DNGRGIP D+H E I A +++T LHAGGKF+ K+YKVSGGLHGVG+SV Sbjct: 61 INEDNSITVEDNGRGIPVDIHPVEKIPAVTLVLTTLHAGGKFDNKNYKVSGGLHGVGISV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL + +KREG IY F G L V G ++GT +TFLP IF + +F Sbjct: 121 VNALSEWLVVEVKREGKIYTQRFEKGTPTTDLEVIGQTK-ESGTVITFLPDKGIFEITEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +YD L RLREL+FLN ++ISL D+R+ + T Y G+ +FV YL + K L P Sbjct: 180 SYDILLKRLRELAFLNKGIKISLTDRRTDKS--ETFQYDKGLVSFVEYLSKTKNKLFDEP 237 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + + ++ ++LA + D Y + F N+I +GG HLS +S LT+ I Y + + Sbjct: 238 VYFNITEGSVLVELAFLYTDTYSSTIYTFANSINTAEGGVHLSAFKSVLTKTINRYAKAN 297 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K GDD REG +VLS+++P+P+F QTK KLV++++++V+++ + + L+ + Sbjct: 298 N-LVKGNVVFNGDDVREGIVAVLSVRLPNPQFEGQTKTKLVNTDIKNVIQTKLYEKLNEY 356 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP AK+I+ KV A R+AAR+A++L RRK V + LPGKLADC E+DP K+EL Sbjct: 357 FEEHPQIAKLIIDKVSRAFNAREAARKAKELVRRKTVFESKGLPGKLADCQEKDPLKAEL 416 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQ R R QAILPL+GKILN ER K+L S+EI +ITA+G+G+ + Sbjct: 417 FLVEGDSAGGSAKQARDRVYQAILPLKGKILNTERTNLKKVLESEEIRNIITAIGSGVNE 476 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 F+I+ +RYHKIIIMTDADVDG+HI+TL+LT FFR LI NG++YI +PPLY G Sbjct: 477 S-FNIDDVRYHKIIIMTDADVDGSHIQTLILTLFFRYFRELIENGYIYIAQPPLYRCKIG 535 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K Y+KDE+ ++++L+N+ + + + +SK++ R +D L + ++ Sbjct: 536 KKEFYIKDEKQMKEFLVNKGIDDFTPIV--DGKELSKDEFRVILDKLLVYEGMVDKLSKV 593 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVK 665 + I + + S + + + +RLN +++ + I + + Sbjct: 594 YPSEEIIR-----CLSIVSPSLDDFNDEDGIKDRLNACLKENSQILIKQIEQQGDSFVFR 648 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 ++ + S K ++ L G+ I+ +L Sbjct: 649 FEIDNEDKEIFISKEFFNSHEYKLISQYAPSKNMLGLPPFKAKVKGELIEFKTIKDMLSF 708 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 I +KG+ +QRYKGLGEMN QLWETT++P TR LL+V I+DA +AD +F+ LMG+ Sbjct: 709 IEDRAKKGLEIQRYKGLGEMNPEQLWETTMDPKTRRLLQVTISDAEEADRVFNMLMGNNP 768 Query: 786 EPRREFIQENSLPSA-LDI 803 + R+EFI++N+ LD+ Sbjct: 769 QLRKEFIEKNAKFVKHLDV 787 >gi|88608222|ref|YP_506597.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama] gi|88600391|gb|ABD45859.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama] Length = 783 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 396/802 (49%), Positives = 547/802 (68%), Gaps = 22/802 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N+ Y ADSI++LKGL+AV+KRP MYIGDTD SGLH M+YEV+DN++DESL GY I Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +++DGS +V DNGRG+PTD+H EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WLKL I R+G ++ F NG L VTG G+ TGT V FLPS F Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDKTGTLVHFLPSRSTFKN 179 Query: 185 QDF-NYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-EITMFYKGGIEAFVSYLDRHKKP 242 ++ TL++R RELSFLN ++ISL+D R ++ F GG E FV+YLDR K+P Sbjct: 180 TTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQP 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +PIR+ G D+I+ID++M+WND Y+ENVLCFTNNI QKDGGTHL+ LRSA+TR + + Sbjct: 240 IHSTPIRVVGGVDSIAIDVSMQWNDSYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHN 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y+ K KKDK V G+D REG +++LS+K+PDP+FSSQTKEKL+SSEV+ V+E V+D Sbjct: 300 YIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIVSD 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L++WLEE+P A++I +KV+++++ R+AA++ARDLTRRKG L+I +LPGKLADC E+ P Sbjct: 360 ALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEKSP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SEL +VEGDSAGGSAKQGR R+ QA+LPLRGKILNVE+ RF K++ S EIG LI ALG Sbjct: 420 ELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 T IG++ F+I+K+RYHKIIIMTDADVDG HIRTLLLTFFFR ++ G+LYI + PLY Sbjct: 480 TSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLY 539 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + R + Y++D+ +LE+YL+++ + + + V + L+ + L + K+++ Sbjct: 540 KVMRKGADVYLRDDAALEEYLLDRIVKGKELE-GANGNVYTGQSLKRVVQQCLVLSKILE 598 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 F +E + G +E + L ++ ++F A W +S + Sbjct: 599 KFDYRIPLEILEVVFLCG-------EEADPHLLAERVALISFGA------WTVVREDSSL 645 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 +R +G++ ++ + + I + + + NG+ I Sbjct: 646 FFERTFQGLRNRYEYSPLFV-PEDLEKMAKIREAISDIFYPGFARFNNGEYHSILAFIRD 704 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D++ R G+ +QR+KGLGEMN QLW TTL+P R++ +V I +A+ AD + S LMG Sbjct: 705 ADSV---ARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMG 761 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D V PRR+FI N+L + +D+ Sbjct: 762 DAVGPRRDFIVNNALNASNIDV 783 >gi|94264231|ref|ZP_01288026.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] gi|93455342|gb|EAT05546.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1] Length = 804 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 360/806 (44%), Positives = 519/806 (64%), Gaps = 13/806 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N Y A+ I++L GL+ V+KRP+MYIG+T E GLHH++YEV+DN+IDE+L G+ Sbjct: 7 NETKNMDYGAEQIKVLSGLEGVRKRPAMYIGNTAFE-GLHHLVYEVVDNSIDEALAGHCS 65 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VTL+ DGS +V DNGRGIP +H EG+SA E++M LHAGGKF+ +YKVSGGLHG Sbjct: 66 RIAVTLHKDGSVSVEDNGRGIPVGMHPTEGVSALELVMCTLHAGGKFDHSTYKVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS IKR+G I+ + +G+ ++ + V G + +G+ +TFLP +IF Sbjct: 126 VGVSVVNALSVRTVAEIKRDGKIHRQHYRHGLKESEVEVVGETEH-SGSRITFLPDPEIF 184 Query: 183 SV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + DF+Y+T+Q RLREL+FLN V+I L D+R+ E +KGG+ +FV +L+R++ Sbjct: 185 TEITDFDYETIQTRLRELAFLNRGVKILLHDERTG--AEDEFHFKGGLRSFVEHLNRNRT 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ PI I+G +D++ +++ ++ +G++E + + NNI K+GG+H+ G R+ALT+ I Sbjct: 243 PVHAEPIFIEGEKDDVQVEVCFQYFEGFNERLYPYVNNIYTKEGGSHVVGFRAALTKCIN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + + GDD REG T V+S+++P+P+F QTK KL +SEV+ +VE + Sbjct: 303 RYASDDIIPKNLREKLSGDDVREGITCVISVRVPNPQFEGQTKTKLGNSEVKWIVEGICH 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +S++LEEHP EA+ I+ K +DA+ R+AARRA+DL+R+KG L KLA+C + Sbjct: 363 EKISSYLEEHPQEARKILSKAVDAARAREAARRAKDLSRKKGSGVDVMLAAKLAECQSKK 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++ E+FLVEGDSAGGSAKQGR R QAILPLRGKI+NVE+ARFD++L+S+EI +I AL Sbjct: 423 PEEREIFLVEGDSAGGSAKQGRDRVFQAILPLRGKIMNVEKARFDRILNSEEIKQVIAAL 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD +KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM LI G +YI +PPL Sbjct: 483 GTGIGREEFDSDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIEQGRVYIGQPPL 542 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + ++RGK Q+ D++SL ++L Q+ SE +E+ C V++ +L + D +L+ Sbjct: 543 FRLSRGKKEQFFLDDDSLNNFLYKQA-SEMLEVHCPDGQVLAGEELVKLLHDLTIYQRLV 601 Query: 602 KDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGSIN 658 N + + V + + + E+ +L +L + W S Sbjct: 602 DYMERTNLWEEIVRFLVAQDIHTADQFESQELLENLHQRLGGGKFILGNIRPCRWRPSCY 661 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 D+ K A + + +I + + Sbjct: 662 EFDVAAKDKAHLLTTV---GPQIPLQPEYRAILRQYPKIAAFLDVGFQVAVKNQQHSAAD 718 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LL I + KG S+QRYKGLGEMN QLW TT+NP+ R LL+V+I DA +AD++F+ Sbjct: 719 WRELLTVIRAESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVRIEDAEKADEIFT 778 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRREFIQ ++L +LDI Sbjct: 779 TLMGDKVEPRREFIQAHALEVSSLDI 804 >gi|29840266|ref|NP_829372.1| DNA gyrase subunit B [Chlamydophila caviae GPIC] gi|29834614|gb|AAP05250.1| DNA gyrase, subunit B [Chlamydophila caviae GPIC] Length = 806 Score = 816 bits (2107), Expect = 0.0, Method: Composition-based stats. Identities = 361/819 (44%), Positives = 514/819 (62%), Gaps = 33/819 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + SYDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DAKEKSYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG T+SDNGRGIP +H++E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IYVRILEDGGITISDNGRGIPIQIHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNAL+ L + ++ Y+M F G+ L G GTE+TF P Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTALQPLGVTDKQ-GTEITFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS F+ L RLREL+FLN + I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DNKIFSSCVFDRSILIKRLRELAFLNRGITIVFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQG----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I G +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPEPIYISGIRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ +K DK S+ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK+IV+KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVSQQITGEALTTFFEENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++DYL+ + + +F + IS L +F+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVGDSKLVFKNGGREISGEALDSFVKL 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L ++ I F E + + + + EK ++ Sbjct: 600 ILNVESFIVALEKKAIP-FSEFLEMRSETSGYPLYYCPPKSGKQGGRYFHSTEEKDKEVL 658 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711 +S +V+ L +++F+ + R + I S +I N Sbjct: 659 SSEDPDSVKVVE-----------LYKTAVFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707 Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 D ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 DA +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806 >gi|319940695|ref|ZP_08015037.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B] gi|319805846|gb|EFW02613.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B] Length = 849 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 369/829 (44%), Positives = 509/829 (61%), Gaps = 37/829 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + ++Y+A SIQIL+GL+AV+KRP MYIGDT SGLHH++YEV+DN+IDE+L G+A Sbjct: 27 DQNPNAYNAASIQILEGLEAVRKRPGMYIGDTADGSGLHHLVYEVVDNSIDEALAGFASH 86 Query: 64 ITVTLNMDGSCTVSDNGRGIPT-----DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 I VT++ D S +V+D+GRGIPT D H + SAAE+ +T LHAGGKF+ YK+SG Sbjct: 87 IEVTIHTDNSISVTDDGRGIPTAIKWDDKH-DPKRSAAEIALTELHAGGKFDNNGYKISG 145 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV------TGSA------- 165 GLHGVGVS VNALS+WL+L ++R+G + F G + N L+ TG + Sbjct: 146 GLHGVGVSCVNALSTWLRLVVRRDGEARSLEFRRGKVVNRLIENAIDPATGKSVRISPMT 205 Query: 166 ----GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE 220 N GTEV FLP +IF +F+Y+TL RLRELSFLNS V I+L D R+ E Sbjct: 206 LLGPTNRRGTEVHFLPDLEIFEQVTEFSYETLLSRLRELSFLNSGVFITLKDLRT--SHE 263 Query: 221 ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR----DNISIDLAMRWNDGYHENVLCF 276 + G+ A+V Y ++ + L + + + +++AM+W D Y+E++ + Sbjct: 264 AQLKTDKGLIAYVEYKNQSRTVLHPKIFHAKETVLSNGSPVEVEVAMQWQDSYNESLTAY 323 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTH++GLR A+TR + +Y+ K+ +KK K GDD REG T VLS+K+P Sbjct: 324 TNNIPQRDGGTHVTGLRGAMTRVLKNYIAKNELAKKSKVDPDGDDMREGLTCVLSVKIPQ 383 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEVR VE V+ L +LE++P +AK+I +K++ A+ R+AAR+AR Sbjct: 384 PKFSSQTKDKLVSSEVRPAVEDVVSRELELYLEQNPTDAKLICEKIITAARAREAARKAR 443 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 DLTR+ G LPGKLADC E++P SELFLVEGDSAGGSAKQGR+ + QAILPLRGK Sbjct: 444 DLTRKTG--MGGGLPGKLADCREKNPAYSELFLVEGDSAGGSAKQGRNSQYQAILPLRGK 501 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 +LNVE+A DK+L S++I L ALGT IG+ FDI KLRYH+IIIMTDADVDGAHIRTL Sbjct: 502 VLNVEKAAQDKLLDSEQIRMLTLALGTNIGK-LFDIEKLRYHRIIIMTDADVDGAHIRTL 560 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRG--KSLQYVKDEESLEDYLINQSLSEEIEL 574 LLT FFRQMP LI NG++YI +PPLY + + +++KDE + YL + +LS Sbjct: 561 LLTLFFRQMPELIENGYVYIAQPPLYKVQKNSKDKGRFLKDEAEMNAYLKDLALSGAALY 620 Query: 575 FCDSKG-VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633 + I L + + L+ + +I D+ + + E+ Sbjct: 621 PSTNAEEPIRGTALETLVGEYLQANAVISRLGGAIDRAVLLAIAAGVELSLENT-FAAQQ 679 Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 A +L + K E W+ + + R G + L + S + R Sbjct: 680 SAERLEKEMRDPNVKIEAYWNEEEEKHVLKIHRTRHGNIKTTTLLPEFLLSADYQKLRES 739 Query: 694 SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 S ++ + G++ + + + KG+ QRYKGLGEM QL +T Sbjct: 740 SLMLQGVIQEGAEIERGGEREPVKNFAEAVGWLMRQAEKGLIRQRYKGLGEMTPEQLRDT 799 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 T++P R +LRV+I DA+ AD +FS LMGD VEPRR FI+ N+L +D Sbjct: 800 TMDPAVRRMLRVRIEDAANADAIFSMLMGDVVEPRRAFIESNALFGNID 848 >gi|297570053|ref|YP_003691397.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925968|gb|ADH86778.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2] Length = 801 Score = 815 bits (2106), Expect = 0.0, Method: Composition-based stats. Identities = 362/811 (44%), Positives = 518/811 (63%), Gaps = 18/811 (2%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSDN + Y A I++L GL+ V+KRP+MYIG+T E GLHH++YEV+DN+IDE+L G Sbjct: 1 MSDNETVTNDYGAAQIKVLTGLEGVRKRPAMYIGNT-AEEGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I +T++ DGS + DNGRGIP ++H EG+SA E++M LHAGGKF+ +YKVSGG Sbjct: 60 YCDRIKITIHKDGSVSSEDNGRGIPVEIHPTEGVSALELVMCTLHAGGKFDHSTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS IKR G I+ ++ G+ + + V G +GT++TFLP Sbjct: 120 LHGVGVSVVNALSLKTIAEIKRNGKIHRQTYRYGVKEGEVEVVGETE-KSGTKITFLPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ F Y+ +Q RLREL+FLN +V+I + D+R+ E +KGGI++FV YL+R Sbjct: 179 GIFTETTEFKYEIIQARLRELAFLNKNVKIKIHDERTG--AEDEFHFKGGIKSFVEYLNR 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ P+ P+ +QG +DN+ +++A ++ +GY E + + NNI K+GG+H++G R ALT+ Sbjct: 237 NRTPVHSEPVFVQGGKDNVQVEVAFQYFEGYTERLHSYVNNIYTKEGGSHVAGFRMALTK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K + + GDD REG T ++S ++P P+F QTK KL +SEV+ +V+S Sbjct: 297 CINRYASDDIVPKNLREKLSGDDVREGITCIISTRVPSPQFEGQTKTKLGNSEVKYIVDS 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +S +LEE+P EA+ I+ K ++A+ R+AARRA++L+R+KG + KLA+C Sbjct: 357 ICHEKISRYLEENPQEARKILSKAVEAARAREAARRAKELSRKKGSGMDVLMAAKLAECQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP K E+FLVEGDSAGGSAKQGR R QAILPLRGKI+NVE+ARF+K+LSS+EI +I Sbjct: 417 TKDPAKREIFLVEGDSAGGSAKQGRDRFFQAILPLRGKIMNVEKARFEKVLSSEEIKQII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 ALGTGIG++ FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM L+ NG +YI + Sbjct: 477 AALGTGIGKEEFDLDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLVENGNVYIGQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY ++RGK ++ D+ SL +L Q+ S + + ++ +L + D Sbjct: 537 PPLYRLSRGKKEKFFLDDYSLNSFLFQQA-STMCSVNTEDGRTVAGEELVALLKDLSHYQ 595 Query: 599 KLIKDFYP-NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL----NFIAEKSEKSW 653 +L++ N + + V V + + + N L ++L RL + W Sbjct: 596 RLVEYLERSNLWEDILRFLVTENVHSADQFE--NEPLLNQLHQRLSGEKFILGNIRPCRW 653 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 S D +K A + + R+ ++ + Sbjct: 654 RPSCYEFDAALKDKAHLLVTV---GPQIPLLPEYRQVLKHYPRVSPYLDGKFTVEVKNQQ 710 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I++ +L++I S KG S+QRYKGLGEMN QLW TT+NP+ R LL+V I DA A Sbjct: 711 IEVNSWREMLESIRSESFKGSSLQRYKGLGEMNPEQLWATTMNPENRILLQVTIDDAEGA 770 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++F+ LMGD+VEPRR+FIQ N+L +LDI Sbjct: 771 DEIFTTLMGDKVEPRRDFIQSNALEVSSLDI 801 >gi|308273672|emb|CBX30274.1| DNA gyrase subunit B [uncultured Desulfobacterium sp.] Length = 815 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 348/821 (42%), Positives = 517/821 (62%), Gaps = 28/821 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + ++Y +DSI++L+GL+AV+KRPSMYIG+ D + GLHH++YE++DN+IDES+ G+ + Sbjct: 2 KEEQNTYTSDSIKVLEGLEAVRKRPSMYIGNIDLQ-GLHHLVYEIVDNSIDESMAGFCNF 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S +V D+GRGIP +HK E + AAEV+M +LHAGGKF+ SYKVSGGLHGV Sbjct: 61 INVIIHTDNSVSVEDDGRGIPVGIHKTEKVPAAEVVMLKLHAGGKFDNDSYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS L L I +G IY +F G L +TG GT++ F P ++I + Sbjct: 121 GVSVVNALSVRLDLEIYTDGKIYSQAFEKGKKVTELTITGETK-KRGTKIHFKPDTEILT 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+++ + RLREL+FLN ++I + D+RS + +Y+GGI +FV ++++H L Sbjct: 180 TDNFDFEVISKRLRELAFLNKKLRIKVEDERSEKK--EEFYYEGGITSFVEFINKHTVVL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I +G+++++ +++ +++ND + E + F NNI +GG H+ G ++ALTR I Y Sbjct: 238 HSP-IYFEGNKNDVMVEVCLQYNDTFSEKLFSFANNINTVEGGFHVIGFKTALTRVINQY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 SK K + G+D REG T+V+SI++ +P+F QTK KL +SE++ +VES VN+ Sbjct: 297 AANGNLSKDLKEKLSGEDVREGLTAVISIRLKNPQFEGQTKTKLGNSEIKGLVESLVNEK 356 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + EE+P AK ++ + +DA+ R AAR+ARDL R KG + A+LPGKLADC +P Sbjct: 357 LAMFFEENPAIAKKVLSRAIDAARARFAARKARDLVRSKGSMVDATLPGKLADCQSSEPS 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+FLVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR D++L S+EI +I ALGT Sbjct: 417 EREIFLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARIDQILKSEEIKNIIIALGT 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G + ++ +RYHKIIIMTDADVDG+HIRTLLLT F+RQ+P +I G+LYI +PPL Sbjct: 477 GVGGEENVVDNIRYHKIIIMTDADVDGSHIRTLLLTLFYRQLPEVIEKGYLYIAQPPLLK 536 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK+ +Y KDE+ L DY I + +S L F+ + + +++ Sbjct: 537 VGKGKNEKYFKDEQELNDYTIKIFCEQNKLFIESDTQTLSDYGLYLFVTNLAEYSSVLRR 596 Query: 604 FYPNHDK-TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK-SWHGSINNSD 661 N K F+E + + V + Q+ + S + N L+ K+E+ +W+ N + Sbjct: 597 LERNGIKADFVEILLKNHVEDKSFLQDYDK--MSYIKNLLSEKKYKTEEINWNPERNIYE 654 Query: 662 ILVKR------------IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 + V+ + + + + I+S + I + + Sbjct: 655 LTVEYPEGLSDNKRQEGLVKDETNRVKIGIGLIYSADYQKCVNIGQNIFKYDKPPFYITG 714 Query: 710 NGD------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 D + KI LL I +KG+ +QRYKGLGEMN QLW TT+NP+ R+LL Sbjct: 715 KDDTEPVNPETKINDKMELLGIILEEAKKGLVIQRYKGLGEMNPDQLWSTTMNPEKRNLL 774 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +VK+ D+ +++F+ LMGD+VEPRREFIQ N+L LDI Sbjct: 775 QVKVGDSVDTNEIFTILMGDDVEPRREFIQNNALDVRMLDI 815 >gi|242281240|ref|YP_002993369.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638] gi|242124134|gb|ACS81830.1| DNA gyrase, B subunit [Desulfovibrio salexigens DSM 2638] Length = 798 Score = 815 bits (2104), Expect = 0.0, Method: Composition-based stats. Identities = 366/801 (45%), Positives = 504/801 (62%), Gaps = 10/801 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N Y A+SI +L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY D V Sbjct: 4 NQDYSAESITVLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVVDNSIDEAMGGYCDKFKV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL+MD S TVSDNGRGIP D+H ++ A E++MT LHAGGKF+ +YKVSGGLHGVGVS Sbjct: 63 TLHMDNSVTVSDNGRGIPVDIHPKKKKPALEIVMTVLHAGGKFDNDAYKVSGGLHGVGVS 122 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS L+ ++R G IY S+ G+ PL G A TGT + F P +IF Sbjct: 123 CVNALSEHLEATVRRGGKIYRQSYERGVPTGPLECIGDA-VTTGTTIRFRPDEEIFETNQ 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+++TL+ R REL++LN ++I +D+RS E + GGI +FV L++ + + Sbjct: 182 FDFNTLKKRFRELAYLNKGLEIEFVDERSNESA--SFKADGGIVSFVEDLNKGQTTV-SE 238 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I + DN+ +LA+++N + EN F NNI +GGTHL+G + ALTR I +Y++ Sbjct: 239 IIYAESETDNVITELAVQYNTAFKENTHTFANNIRTVEGGTHLAGFKGALTRAINTYIQN 298 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 S KK K + GDD REG T+V+S+K+PDP+F QTK KL +SE+ +V V D LS+ Sbjct: 299 SDLPKKLKIKLSGDDVREGLTAVISVKLPDPQFEGQTKTKLGNSEMVGIVSGMVYDKLSS 358 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + +E+P +AK IV+KV+DA+ RDAAR+ARDL RRKG L SLPGKLADC +DP +SE Sbjct: 359 YFQENPKDAKAIVEKVVDAARARDAARKARDLVRRKGALSDHSLPGKLADCQSKDPAESE 418 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQGR+ ++QAILPLRGKILNVE+ RFDKML ++EI LITA+G GIG Sbjct: 419 LFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFDKMLGNKEIRALITAMGIGIG 478 Query: 487 --QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 + D +KLRYHK++IMTDADVDG+HIRTLLLTFFFRQ LI G LYI +PPLY I Sbjct: 479 QEEGEKDFDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELIERGHLYIAQPPLYRI 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK +++KD+ L LI + ++++I + + + L +DD I I + Sbjct: 539 AKGKYEKFIKDDSELYSLLIER-VAKDITIKTECGQEYHQESLIELLDDIRFIKGKIGEA 597 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + ++S + + S + + + + Sbjct: 598 ANMGISDALFAKLVSLDEKMTPEMFADSDPQSFIFKMEESGYKVIIEREETETEGEARVY 657 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGPCSLL 723 + L S + + +I +E + ++ ++ G SLL Sbjct: 658 VVFENENGHRTRLAVEFFNSKLFRNTYDRNRKIVDECDGIDFKITRGENETEVRGIFSLL 717 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + KGI++QRYKGLGEMN QLWETT++P+ R++L+V I DA+ A+D+F LMGD Sbjct: 718 DGVMEEAYKGINLQRYKGLGEMNPEQLWETTMDPEKRTMLQVTIEDATAANDIFEDLMGD 777 Query: 784 EVEPRREFIQENSLPS-ALDI 803 VEPRREFI++N+L LDI Sbjct: 778 NVEPRREFIEKNALAVQELDI 798 >gi|258406590|ref|YP_003199332.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692] gi|257798817|gb|ACV69754.1| DNA gyrase, B subunit [Desulfohalobium retbaense DSM 5692] Length = 794 Score = 814 bits (2102), Expect = 0.0, Method: Composition-based stats. Identities = 364/801 (45%), Positives = 515/801 (64%), Gaps = 9/801 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ + Y ADSI IL+GL AV+KRP+MYIG TD + GLHH++YEV+DNAIDE++ GY + + Sbjct: 1 MEKNQYTADSITILEGLSAVRKRPAMYIGSTDLQ-GLHHLVYEVVDNAIDEAMAGYCNRV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+++D S T+SD+GRGIP D+H ++ A EV+MT LHAGGKF+ ++YKVSGGLHGVG Sbjct: 60 KVTIHLDNSVTISDDGRGIPVDMHPKQNKPAVEVVMTVLHAGGKFDNETYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L++ I+R G Y + G+ + L G + TGT + F P +IF+ Sbjct: 120 VSVVNALSEYLEVTIQRSGTKYHQRYERGLPKSELEERGPT-HRTGTTIRFRPDEEIFAD 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F TL R EL++LNS ++I+ D+R+ E + Y GGI +F+ L+ + L Sbjct: 179 LNFTAATLTKRFEELAYLNSGLEIAFFDERTQESQR--FKYDGGIRSFIENLNADEGALH 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + G +N++I+ A+++N G+ ENV F NNI K+GG+HLSG ++ALTR I +Y+ Sbjct: 237 S-IVYGHGEVENVAIEFALQYNGGFKENVHSFANNIRTKEGGSHLSGFKTALTRNINTYL 295 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + KK K + GDD REG T+V+S+K+P P+F QTK KL +SEV V S ++ L Sbjct: 296 LHADLPKKFKTKITGDDVREGLTAVVSVKLPMPQFEGQTKTKLGNSEVAGHVASVISSHL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LEE+P +AK IV+K++DA+ RDAAR+A+DL RRK L +LPGKLADC +DPK+ Sbjct: 356 GTYLEENPKDAKAIVEKIVDAARARDAARKAKDLVRRKSALGDNALPGKLADCQSKDPKE 415 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR + QAILPLRGKILNVE+ RFDKML ++EI LITA+G G Sbjct: 416 SELFIVEGDSAGGSAKQGRDPKFQAILPLRGKILNVEKTRFDKMLENKEIKHLITAMGAG 475 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ ++ KLRYHK+IIMTDADVDGAHIRTLLLTFFFRQ P LI +G+LYI +PPLY + Sbjct: 476 IGEEEINLEKLRYHKVIIMTDADVDGAHIRTLLLTFFFRQYPQLIEHGYLYIAQPPLYRV 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +G +++ E L+ YL+ + +S+E+++ S+ L +D + + ++D Sbjct: 536 HKGNFERFLSTENELKQYLMQR-ISDELKVTTPSEHAFEGQALVQLLDSIVALQDKMRDV 594 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + + ++ + + L + + + E S + Sbjct: 595 ANFGVQEDLFWDILQYGQRLRPETLRDSELYTPFFEYMEQLGYDLEVEEEEEEEESRWYL 654 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 I R + L S K +I + I ++ + I P LL Sbjct: 655 NIIDR-NDHRVHLGIEFFNSKLYKIAYQILDELKSHSPELIFTVTSKSTSLDIDSPFGLL 713 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + + + KGI++QRYKGLGEMN QLWETT+ PD R LL+V I DA++AD +FS+LMGD Sbjct: 714 EHVLAEADKGINVQRYKGLGEMNPKQLWETTMEPDDRMLLQVDIEDAAEADSIFSKLMGD 773 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR+FI+ N+L LDI Sbjct: 774 KVEPRRDFIERNALSVDELDI 794 >gi|262193330|ref|YP_003264539.1| DNA gyrase subunit beta [Haliangium ochraceum DSM 14365] gi|262076677|gb|ACY12646.1| DNA gyrase, B subunit [Haliangium ochraceum DSM 14365] Length = 821 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 388/826 (46%), Positives = 531/826 (64%), Gaps = 28/826 (3%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDADSI +LKGL+AV+KRP MYIGDTD SGLHHM++EV+DNA+DE Sbjct: 1 MADPTVTPANDATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L GY D + +T++ D S TV DNGRGIP +HK+EG AAE++MT LHAGGKFNQ SYK Sbjct: 61 ALAGYCDRVDITIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS LKL I+REG +Y + GI + L TG + GT++TF Sbjct: 121 VSGGLHGVGVSVVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTG-TTDRRGTKITF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LP ++F +F++ L R RELS+LNS + I++ D+R E ++ Y+GG+ +FV+ Sbjct: 180 LPDPEVFKQTEFSFGALSQRFRELSYLNSGLTIAITDER--ESQQQVFCYEGGMASFVAD 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ +K P+ + R+ +++D+AM+WND Y E + CFTN I KDGGTHL+G R Sbjct: 238 LNANKNPVT-EVVAFTDEREGVTVDIAMQWNDSYAEQINCFTNTIKNKDGGTHLTGFRQG 296 Query: 296 LTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + +Y ++ K+ K + G+D REG +V+S+K+ DP+FS+Q K+KLVSSEV Sbjct: 297 LTRTVNAYAAENKLLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAG 356 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + VND L ++ E +P +A+ I++K + A+ RDAAR+AR++ +RKG L+ SLPGKL Sbjct: 357 AVAAVVNDKLQSFFEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKL 416 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC ERDP K ELF+VEG+SAGGSAKQGR RE QAILPL+GKILNVERAR DKMLSSQEI Sbjct: 417 ADCQERDPSKCELFIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEI 476 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 TLITALG GIG + D+ +LRYH+I+IMTDADVDG+HIRTLLLTFFFRQ P +I N L Sbjct: 477 VTLITALGCGIGPEK-DMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHL 535 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS--------LSEEIELFCDSKGVISKND 586 YI +PPL+ + RGKS Y+K+E SLEDY+++ S + D+ I+ Sbjct: 536 YIAQPPLFKVKRGKSETYLKNEHSLEDYVLDLVSKELVVRGTSGDGAGGDDAGPEITGEA 595 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN------CESDQEINVSLASKLAN 640 L FI D + + D + G F E + + + + L Sbjct: 596 LHAFIKDTNEYRRHYTQLDKRGDSRLFASFIEGGEFTEQDLASEEGVERVRAGMRAYLEA 655 Query: 641 RLNFIAE-KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 +A+ + E + + V+ ++ + + + + ++ Sbjct: 656 HHKDLADLEFELVRDEEHSVYALRAPLEGGNVRRDTIIGRDLLQTREVEEIARLTKSLDA 715 Query: 700 NYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 L+ G+ I +T L + + ++GRKG+S+QRYKGLGEMN+ QLW+TT+ PD Sbjct: 716 TLRGPYVLVHKGEDIGTVTTLDELAEAVEAVGRKGLSIQRYKGLGEMNSDQLWDTTMCPD 775 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R+LL+V+I +A D+FS LMGD VEPRR FI+ N+L LDI Sbjct: 776 QRTLLQVRIDAREEAADVFSVLMGDLVEPRRHFIENNALNVRNLDI 821 >gi|282889966|ref|ZP_06298501.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500159|gb|EFB42443.1| hypothetical protein pah_c008o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 833 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 352/825 (42%), Positives = 509/825 (61%), Gaps = 30/825 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 I +YDA SI +L+GL AV++RP MYIGDT +GLH ++YE +DN IDE++ GY I Sbjct: 13 IAQKAYDASSITVLEGLQAVRERPGMYIGDT-ASNGLHQLVYEAVDNCIDEAMAGYCSAI 71 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVSG 118 VTL+ DG+ T+ DNGRGIP H++E +SA EV+MT LHAGGKF++ +YKVSG Sbjct: 72 YVTLHKDGAATIEDNGRGIPIQKHEKESLKQGRDVSALEVVMTILHAGGKFDKDTYKVSG 131 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS V ALS L +++ +G+ YEM F G + PL + G+ GT++TF+P Sbjct: 132 GLHGVGVSCVCALSKKLVVQVYNQGSTYEMEFSKGKVVRPLSIVGTTT-KRGTKLTFIPD 190 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I +V F+YD L RLREL+FLN + I D+R + ++ Y GG+ +FVSYL+ Sbjct: 191 DTIMNVTTFDYDILAKRLRELAFLNKGINIYFHDERDADKDDVNFCYSGGLLSFVSYLNE 250 Query: 239 HKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +K+PL +PI GSR I +++M+WNDGY+EN+ + NNI + GGTHL+G + Sbjct: 251 NKEPLFPTPIYFHGSRQGDDGPIEFEVSMQWNDGYNENIYSYVNNIATRSGGTHLTGFST 310 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y++ K DK S+ G+D REG T+V+S+K+ +P+F QTK++L +S+V S Sbjct: 311 ALTRVLNTYIKNHGLLKSDKYSITGEDMREGLTAVISVKVANPQFEGQTKQRLGNSDVGS 370 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VV+ V + L +L+E+P ++ I K + A+ R+AAR+AR+LT RK LD A LPGKL Sbjct: 371 VVQQIVGEELVIYLDENPAISRSIADKAMLAAQAREAARKARELTLRKSALDSARLPGKL 430 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 DC E++P E+++VEGDSAGGSAK GR R QAILP+RGKILNVE+AR +K+L +QE+ Sbjct: 431 TDCQEKNPALCEIYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLGNQEV 490 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 GT++ ALG GIG+D F+I+KLRYHKIIIMTDADVDG+HIRTLLLTFF+R MP L+ N ++ Sbjct: 491 GTMVAALGCGIGRDGFNIDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPGLVENNYI 550 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLY +TR K+ +Y+ E+ ++DY++ LS+ D++ + ++ I Sbjct: 551 YIAQPPLYRVTRKKTSRYIHSEKEMDDYMLELGLSDIKIKLKDTE--LDAERMQELIRTL 608 Query: 595 LKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 L+++ + + F+ G + S + + + E+ Sbjct: 609 LEVESFVSRIERKGVSFREFLASKNEEGRLPRFQVNLLKGSQFAYSIKEFEVLKQNDEEE 668 Query: 653 WHGSINN--SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC- 709 + I I ++ + I + + R+ + + Sbjct: 669 QQQRHKETLASIPESEITEEMRTFRPTRFNFIELYEDISLQGLVGRLNSFGFDLNHYLIA 728 Query: 710 ----------NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 G + +L I GRKGI +QRYKGLGEMNA QLWETT++P+ Sbjct: 729 DGHLLDIIEDGGKSTPFSTLGEVLAFIRENGRKGIEIQRYKGLGEMNADQLWETTMDPEK 788 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R+LLRV + D AD +F+ LMG+ V PRR FI++++L LD+ Sbjct: 789 RTLLRVTLPDMVAADHMFTMLMGEAVPPRRAFIEQHALSVKNLDV 833 >gi|46578420|ref|YP_009228.1| DNA gyrase subunit B [Desulfovibrio vulgaris str. Hildenborough] gi|120601056|ref|YP_965456.1| DNA gyrase, B subunit [Desulfovibrio vulgaris DP4] gi|46447831|gb|AAS94487.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561285|gb|ABM27029.1| DNA gyrase subunit B [Desulfovibrio vulgaris DP4] gi|311232352|gb|ADP85206.1| DNA gyrase, B subunit [Desulfovibrio vulgaris RCH1] Length = 798 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 369/810 (45%), Positives = 496/810 (61%), Gaps = 19/810 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N +Y ADSI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MTTGTGN-NYTADSITILEGLSAVRKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEAMAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V L++D S TVSDNGRGIP D+H +EG A EV+MT+LHAGGKF+ +YKVSGGL Sbjct: 59 CSKVVVKLHLDNSVTVSDNGRGIPVDMHPKEGRPAVEVVMTKLHAGGKFDNNAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS WL++R+KR+G Y + G+ L V G A GT V F P + Sbjct: 119 HGVGVSCVNALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG-ASEGHGTTVRFKPDEE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+Y+TL+ R ELS+LN ++I ID+RS E T F +GGI FV L+ + Sbjct: 178 IFETNQFSYETLRKRFEELSYLNRGLEIEFIDERSGESH--TFFAEGGIRQFVKDLNSGE 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + +G D + +D A+++N GY ENVL F NNI K+GGTHL+G ++ALTR I Sbjct: 236 TGIHP-IVAGEGKTDGVVVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTALTRAI 294 Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 YV+ K ++ GDD REG T+V+S+K+P P+F QTK KL +SE+ +V Sbjct: 295 NGYVKGQADLTKKMKGTALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIAGIVAG 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D L+ EE+P + ++I+ K +DA+ RDAARRA++L RRKG L +LPGKLADC Sbjct: 355 IVYDRLNVHFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SELF+VEGDSAGGSAKQGR QAILPLRGKILN ER RFDKML+++E+ LI Sbjct: 415 SKDPALSELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKEVKALI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D D +KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQ LI +G+LYI + Sbjct: 475 TAMGAGIGEDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGYLYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +++KD+ L ++L+ + +SE++E+ D+ + + Sbjct: 535 PPLYRAHNSRMERFIKDDAELNNFLLTR-VSEDVEVRTPGGCSFKGTDIVRLMRSIETVA 593 Query: 599 KLIKDFYPNHDKT--FIEQAVISGVFNCESDQEIN-VSLASKLANRLNFIAEKSEKSWHG 655 I+D F+ E ++ + L LA R + + E Sbjct: 594 ARIRDVETAGISRELFLGFLEYGERITPEWFEQHDGNGLRPWLAGRGYSMTAELESG--- 650 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKI 714 + D + + S + E +L G+ + Sbjct: 651 --DEGDRTFVVFENTNGHRTRIGAEFFGSRMYRSSWDALEAIRSECGGLSFTLDRKGETV 708 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L +F R+G+++QRYKGLGEMN QLW TT+NP+ R+LL+V I DA +A Sbjct: 709 GEGDMFDLQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSIEDAEEAS 768 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D F +LMGD VEPRREFI N+L LDI Sbjct: 769 DAFEQLMGDRVEPRREFIVRNALAVQELDI 798 >gi|298529211|ref|ZP_07016614.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510647|gb|EFI34550.1| DNA gyrase, B subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 800 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 365/803 (45%), Positives = 515/803 (64%), Gaps = 12/803 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y A SIQ+L+GL AV+KRP+MYIG TD GL H++YEVLDN+IDE++ GY D Sbjct: 7 QENSGEYTAQSIQVLEGLTAVRKRPAMYIGSTD-VRGLQHLVYEVLDNSIDEAMAGYCDN 65 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + +T++MD S T+SDNGRGIP D H++E A EV+MT LHAGGKF+ SYKVSGGLHGV Sbjct: 66 VRITVHMDNSVTISDNGRGIPVDWHEKENRPALEVVMTVLHAGGKFDNASYKVSGGLHGV 125 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS +L++ ++REG Y F GI L G + GT + F P +IFS Sbjct: 126 GVSVVNALSEYLEVTVRREGEKYFQKFERGIPVTKLRHEGPSS-SRGTTIKFRPDEEIFS 184 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF+YDTL R EL++LNS ++I D+R + + GG+ +F+ + +K Sbjct: 185 TLDFDYDTLSKRFEELAYLNSGLRIEFQDERYQKS--DVFQFDGGLLSFIK--NVNKDSG 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I G N+S++L +++ GY E++ F NNI +GGTHL+GLRSALTR I +Y Sbjct: 241 LHKVIYASGEVHNVSMELTLQYKTGYKEHIYSFANNIRTVEGGTHLNGLRSALTRAINTY 300 Query: 304 VEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 ++ + + K+ + GDD REG TS++S+K+PDP+F QTK KL +SE+ V + Sbjct: 301 IQHAQDLPRKLKQKLTGDDVREGLTSIISVKVPDPQFEGQTKTKLGNSEISGYVSGIAYE 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 ++ +L E+P +A+IIV+KV+DA+ R+AAR+A++L RRKG L SLPGKLADC ++P Sbjct: 361 KITTFLNENPKDARIIVEKVVDAARAREAARKAKELVRRKGALSDYSLPGKLADCQSKNP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +SE+F+VEGDSAGGSAKQGR+ ++QAILPLRGKILNVE+ RF+K+L + EI LITA+G Sbjct: 421 SESEIFIVEGDSAGGSAKQGRNPKHQAILPLRGKILNVEKTRFEKILENNEIKALITAMG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D++KLRYHKI+IMTDADVDGAHIRTLLLTFFFRQ LI NG+LYI +PPLY Sbjct: 481 AGIGDKELDLSKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQFSQLIENGYLYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +G Q++ DE+++ D+L+N+ EI + ++ +K+++ I + + + + Sbjct: 541 RVHKGNFEQFISDEKTMHDFLLNRVYD-EISIKTENGLEYTKDEMVELIKNLISLKDSFE 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 D K + Q+++ + + ++ E + + I Sbjct: 600 DAGNMGIKEELFQSLLEYGPRLHPVHFVYEDSSEFISFMSGRGFETTLEKEESEIEKRYF 659 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCS 721 LV + + S K + + N ++ D I++ G Sbjct: 660 LV--FTDRNEHSTRIGIEFFNSGLYKKAHQVQQQILHNNPGLGFEILSQKDTIQVKGIFP 717 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 LLD +F + KGI++QRYKGLGEMN QLW TT++PD R++L+V + DA ADDLFSRLM Sbjct: 718 LLDKVFELAHKGINIQRYKGLGEMNPEQLWSTTMDPDKRTMLQVNVEDAELADDLFSRLM 777 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GD+VEPRREFI++N+L A LDI Sbjct: 778 GDKVEPRREFIEKNALEVADLDI 800 >gi|114776948|ref|ZP_01451991.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1] gi|114553034|gb|EAU55465.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1] Length = 774 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 401/777 (51%), Positives = 523/777 (67%), Gaps = 11/777 (1%) Query: 35 TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94 TD +GLHHM++EV+DNAIDE+L G+ D I V ++ D S TV DNGRGIP +H EE S Sbjct: 1 TDDGTGLHHMVFEVVDNAIDEALAGHCDKIEVIIHSDDSVTVRDNGRGIPVGMHDEEQCS 60 Query: 95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154 AA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L+L I+REG+++ ++ G+ Sbjct: 61 AAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSESLELVIRREGHVHYQKYLMGV 120 Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 PL V G A +GTEV FLPS +IFS ++ ++D L RLRELSFLNS V I ++D+R Sbjct: 121 PVEPLKVIGDAK-GSGTEVRFLPSLEIFSHRNMSFDILAARLRELSFLNSGVHIEVLDER 179 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274 + ++ Y+GGI AFV +L+R + PL + +Q R+++ ++LAM+W D Y ENV Sbjct: 180 TD--HKVVFEYEGGISAFVEHLNRTRAPLHSDCVSMQIDRNDVGVELAMQWTDSYQENVF 237 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 CFTNNIPQKDGG+HL+GLR ALTR + +Y S KK K S+ G+DCREG T+VLS+K+ Sbjct: 238 CFTNNIPQKDGGSHLAGLRGALTRCVNNYAAASGLLKKHKVSLTGEDCREGLTAVLSVKV 297 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 PDP+FSSQTKEKLVSSEVR +VES VN+ L+ W EE+P EA IV KV +A+ R+AAR+ Sbjct: 298 PDPKFSSQTKEKLVSSEVRPIVESVVNEKLAEWFEENPKEAMRIVGKVAEAATAREAARK 357 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 ARDLTRRKG LDI+SLPGKLADC E+DP SEL+LVEGDSAGGSAKQGR R+ QAILPL+ Sbjct: 358 ARDLTRRKGALDISSLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKAQAILPLK 417 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GKILNVE+ARFD+MLSSQEIGT+ITALGT IG+D FDI+KLRYHK++IMTDADVDG+HI Sbjct: 418 GKILNVEKARFDRMLSSQEIGTMITALGTSIGKDDFDISKLRYHKVVIMTDADVDGSHIL 477 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574 TLLLTFF+RQMP LI G+LYI +PPLY +TRGK +Y+ D++ L ++L+ + Sbjct: 478 TLLLTFFYRQMPELIERGYLYIAQPPLYRVTRGKKSRYIADDDGLFEFLLEHGSDGKEYF 537 Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 IS L+ + ++ +L+ D+ ++ + SG + + + Sbjct: 538 SSSDGQPISGERLQTSVRSIHRLQRLLSRLSQRIDRKVLKLLIESGKISMQMMRSRAELE 597 Query: 635 ASKLA-NRLNFIAEKSEK--SWHGSINNSD----ILVKRIARGVQEQFVLEGSSIFSFGS 687 A +RL + + ++ +W + N D I +R G L+ + + Sbjct: 598 ERLQALDRLFELTTREDETLTWKVNENEEDGTCWIQFQRRDHGRVMISRLDKDLVGTAEF 657 Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 + I+ L IT L I S GRKG+ +QRYKGLGEM+ Sbjct: 658 GEAQKLCASIQNLVDDGAHLSEGEKNWPITHFDELASIIESEGRKGLGIQRYKGLGEMDP 717 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLWETT++P R RV + D AD+ FS LMGD VEPRR FIQ+N+L LD+ Sbjct: 718 EQLWETTMDPVNRVFKRVMLEDVVNADETFSTLMGDAVEPRRRFIQDNALKVQNLDV 774 >gi|163783146|ref|ZP_02178140.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1] gi|159881480|gb|EDP74990.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1] Length = 798 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 334/803 (41%), Positives = 489/803 (60%), Gaps = 17/803 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q+ Y A I+ + GL+ V+ RP+MYIGD GE GLHH+I+E+LDNA+DE++ GYA Sbjct: 11 QEVQDVDYGAQDIKAVTGLEHVRLRPAMYIGDV-GERGLHHLIWEILDNAVDEAMAGYAK 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ++V ++ DGS TV D+GRGIP D+H E G A E++ T L AGGKF +K+Y SGGLHG Sbjct: 70 NVSVIIHDDGSITVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKAYAYSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS WL + + R+G IY + G L V G+ GT VTF P DIF Sbjct: 130 VGASVVNALSEWLLVEVYRDGKIYRQEYRRGEPVYELKVVGNTT-KRGTRVTFKPDPDIF 188 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +D ++ RLREL++LN V+ L D+RS + GIE V YL + K+P Sbjct: 189 ETTRIKFDIVEKRLRELAYLNPEVRFYLKDERSDKEIVYKF--DRGIEELVEYLSQAKEP 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + +RIQG +D + +D+A R+ Y E + F NN+ +GGTH++G RS LT+ + Sbjct: 247 LFKDIVRIQGDKDGVIVDIAFRYVRDYKELIDSFVNNVKTVEGGTHVTGFRSGLTKAVVR 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 E SK+ K G+D REG +V+S K+P+P+F QTK KL + V+++V+S V D Sbjct: 307 LAEGLKLSKELKTMFSGEDVREGLVAVISCKVPEPQFEGQTKTKLGNQNVKTIVDSIVYD 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ + E+ K+IV+K ++A++ R+AA++A++L RRK L+ LPGKLADCSE+DP Sbjct: 367 YLTEYFNENKDVLKLIVEKAIEAALAREAAKKAKELVRRKSPLEDGILPGKLADCSEKDP 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +K E+F+VEGDSAGGSAKQ R R QAILPLRGKI+NVE+AR DK+L+++E+ +++ALG Sbjct: 427 EKCEIFIVEGDSAGGSAKQARDRRFQAILPLRGKIINVEKARIDKVLANEEVKAIVSALG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG++ D++KLRYHKII+MTDAD+DG+HIRTLLLTFF+R MP LI NG++YI PPLY Sbjct: 487 CGIGEEL-DLSKLRYHKIILMTDADIDGSHIRTLLLTFFYRFMPQLIENGYVYIALPPLY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +G+ YVKD+ LE +L +L + + + ++ + Sbjct: 546 KLKKGRKEMYVKDDRELEHFLQELVKEHSYIKDS-VGREFRGEELGKLLRNLREYEESYR 604 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 N + + + V + V ++ + + + DI Sbjct: 605 ALIKNKGEDIVNFLLAHRVVEEDLRSANRVKEIVRIMGE-ELTDYRVDTRYDEFEGAYDI 663 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITGPCS 721 ++ G + +++ + S K +E +L + ++ + K+ Sbjct: 664 ILYDDRLG--TKVIVDADFLSSLSYKQV------LEGIHLHLPVVVGYDSKTRKVKNLKE 715 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + DT+ + + GI +QRYKGLGEMN QLWETT++P TR L+RV + DA +AD +F+ LM Sbjct: 716 VYDTVMELVKSGIEIQRYKGLGEMNPQQLWETTMDPKTRRLMRVTVEDAVEADRIFTILM 775 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G++VEPRREFI+ + LD+ Sbjct: 776 GEQVEPRREFIETYAKEVKNLDV 798 >gi|329942857|ref|ZP_08291636.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10] gi|332287450|ref|YP_004422351.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC] gi|313848029|emb|CBY17027.1| DNA gyrase subunit B [Chlamydophila psittaci RD1] gi|325506975|gb|ADZ18613.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC] gi|328815117|gb|EGF85106.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10] gi|328914698|gb|AEB55531.1| DNA gyrase, B subunit [Chlamydophila psittaci 6BC] Length = 806 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 363/819 (44%), Positives = 516/819 (63%), Gaps = 33/819 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DAKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG T+SDNGRGIP H++E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IHVRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNAL+ L + ++ Y+M F G+ L + G+ GTE+TF P Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTGLQLLGATDKQ-GTEITFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 ++IFS F+ L RLREL+FLN + I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DNEIFSSCVFDRSILIKRLRELAFLNRGITIIFEDDRDVSFDKVIFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I GSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPEPIYISGSRTGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ +K DK S+ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + +E+P AK+IV+KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVSQQITGEALTIFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F++ KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGSDNFNLGKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++DYL+ + + +F + IS L +F+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVCDSKLVFKNGDREISGEALDSFVKL 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I+ I E + +L L ++ + + Sbjct: 600 ILNIENFIVALEKKAVPF------------SEFLEMRKETLGYPLYYSPPQSGKQGGRYF 647 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711 + S + + R + L +SIF+ + R + I S +I N Sbjct: 648 YSSEEKEEEMASREDADSMKVIELYKTSIFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707 Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 D ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 DA +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806 >gi|124516516|gb|EAY58024.1| DNA gyrase, B subunit [Leptospirillum rubarum] gi|206603407|gb|EDZ39887.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 818 Score = 810 bits (2093), Expect = 0.0, Method: Composition-based stats. Identities = 341/824 (41%), Positives = 502/824 (60%), Gaps = 27/824 (3%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS Y A+ I++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L G Sbjct: 1 MSSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I +T++ D S TV+DNGRGIPT +H E+ SAAEV++T LHAGGKFN YKVSGG Sbjct: 60 HCSEIHITIHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS L L I + G I+ ++ G D PL V G GT + F P Sbjct: 120 LHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETT-QRGTIIRFWPDM 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 I F++DTL HR REL+FLN + I L D+ + RE T ++GG+++FVS+L+ + Sbjct: 179 TIMETDQFSFDTLAHRFRELAFLNPVLTIHLKDEET--LREETFHFEGGVQSFVSFLNEN 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTR 298 KK L + D ++A ++ + +E VL F NNI ++GGTH+ G R+A+T+ Sbjct: 237 KKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I ++ + +K ++ G+D REG T ++S+++P P+F QTK KL SS V +ES Sbjct: 297 TINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 F+++ L EE PL AK I +K + + R+AAR+A+DL +RK VL+ ++LPGKLADC Sbjct: 355 FLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTL 477 E DP KSEL++VEGDSAGGSAKQGR R QAILPL+GKILNVE++R +K +++ E+ L Sbjct: 415 ESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRAL 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA+G G+G++ F KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M LI F+YI Sbjct: 475 ITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIA 534 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++ G+ +Y+ ++E+L+ Y++ + ++ + + +++ + + + Sbjct: 535 QPPLYKVSYGRQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHF 594 Query: 598 DKLIKDFYPNHDKTFIEQAV---ISGVFNCESDQEINVSLASKLANRL------NFIAEK 648 ++ ++ + + + ++E L S L +A + Sbjct: 595 EEQVRAHAQRFGNEMLLRLIGMFPETGIELLKNEEAAQRLVSFLTGEYPGWVDGGRLAGQ 654 Query: 649 SEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 E+ H I + G + + VL+ + + + + R Sbjct: 655 VERDPGMSESHPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLKLLRQSGLLFP 714 Query: 704 ILSLICN---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 ++ G++I+ P LL + S R+ +S+QRYKGLGEMN QLWETT++P R Sbjct: 715 GGFVLRRGAEGEEIRFRSPRELLSFLESPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRR 774 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +LL+V I D +AD +F+ LMG++V PRREFI++++L LDI Sbjct: 775 TLLKVSIPDYVEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818 >gi|303326105|ref|ZP_07356548.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3] gi|302864021|gb|EFL86952.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3] Length = 801 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 360/807 (44%), Positives = 504/807 (62%), Gaps = 15/807 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + N Y+A SI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY Sbjct: 4 ETSGNGGYNASSITILEGLSAVRKRPAMYIGSTD-GRGLHHLVYEVVDNSIDEAMAGYCS 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ITV L+ D S TV D+GRGIP D+H +EG+ A +V+MT+LHAGGKF+ SYKVSGGLHG Sbjct: 63 RITVILHADNSVTVRDDGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNTSYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS L + ++R+G Y + G+ + L V G GT V F P +IF Sbjct: 123 VGVSCVNALSEELTVTVRRDGKRYRQHYARGVPQDQLAVIGEDVEGHGTTVRFRPDEEIF 182 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 V +F+Y+TL+ R EL++LN + I ID+R E +GGI FV+ L+ ++ Sbjct: 183 EVLEFSYETLKKRFEELAYLNKGLIIECIDERIGETH--VFHAEGGIRQFVADLNSGEQG 240 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G D++++D A+++N GY EN+L F NNI K+GGTHL G R+ALTR I Sbjct: 241 IHS-IIFGEGMVDSVTVDFALQYNAGYKENILTFANNIRTKEGGTHLVGFRTALTRAING 299 Query: 303 YVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y++ K ++ GDD REG T+V+S+K+P P+F QTK KL +SEV +V V Sbjct: 300 YIKGQQDLVKKLKNTALSGDDVREGLTAVISVKLPQPQFEGQTKTKLGNSEVAGLVAGVV 359 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L+ + EE+P + ++I++K +DA+ RDAARRA++L RRKG L +LPGKLADC + Sbjct: 360 YDRLNVYFEENPKDIRLIIEKAVDAARARDAARRAKELVRRKGALSDNALPGKLADCQSK 419 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SELF+VEGDSAGGSAKQGR+ +NQAILPLRGKILN ER RFD+ML+++E+ LITA Sbjct: 420 DPVESELFIVEGDSAGGSAKQGRNPKNQAILPLRGKILNTERTRFDRMLANKEVKALITA 479 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G GI QD D+ KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ ++ GF+YI +PP Sbjct: 480 MGAGI-QDDTDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQYQEMVEKGFVYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + +++KD+ L D+L+++ +SE++ + + S L + + K++ Sbjct: 539 LYRVHNSRMEKFIKDDAELNDFLLSR-VSEDVSIVARNGKTFSGKALISLMRRIEKLEMR 597 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCE--SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + D + A+ + E ++ + + L + + E+S + Sbjct: 598 VTDAEGAGTPRDLFLALTTYPVRAEASMLEDQDSEFTAWLNEHGYLLTLERERS---EED 654 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKIT 717 + + L S + ++F+ EE +L + Sbjct: 655 DEERLFAVFESTGSHHTRRGMEFFASRLYRQTWQLFTELREECGGLAFTLRRKDGEAAAD 714 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + R+GI++QRYKGLGEMN QLW TT+NPD R LL+V + DA+ A D F Sbjct: 715 DVFQLMQMVLDEARRGINIQRYKGLGEMNPDQLWVTTMNPDNRILLQVSVEDATSASDAF 774 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR+FI+ N+L LDI Sbjct: 775 EELMGDRVEPRRDFIERNALAVQELDI 801 >gi|225848548|ref|YP_002728711.1| DNA gyrase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644043|gb|ACN99093.1| DNA gyrase, B subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 809 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 353/820 (43%), Positives = 504/820 (61%), Gaps = 28/820 (3%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M + +N Y A++IQ + GLD V+ RP+MYIGD GE GLHH+++E+LDNA+DE++ G Sbjct: 1 MEEIKNENIEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLVWEILDNAVDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 YA ITV ++ DGS TV D+GRGIP D+H E I A E++ T L AGGKF++K+Y+ SGG Sbjct: 60 YAKNITVIIHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALSSWL + + R G IY + G PL V G GT+VTF P Sbjct: 120 LHGVGASVVNALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTT-KRGTKVTFKPDD 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +D +Q R+REL+FLN V+ +ID+R + + +++ GI FV L++ Sbjct: 179 SIFETTTIKFDIIQKRVRELAFLNPGVRFVVIDER--KDIKEEFYFENGIVDFVRVLNQA 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+PL I ++G +D + +++A ++ Y+E + F NNI +GGTH+SG R+ALTR Sbjct: 237 KEPLFDEVIYVKGEKDGVLVEVAFQYTKSYNEVIESFVNNIKTVEGGTHVSGFRAALTRS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K+ K V GDD REG T+V+S+K+P+P+F QTK KL + +V+ +VES Sbjct: 297 MNKTLSGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D L + E++ A I +K ++A++ R+AAR+A++++RRK L+ +SLPGKLADCSE Sbjct: 357 VGDYLLEYFEKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP+ ELF+VEG+SAGGSAKQGR R QAILPL+GKILNVE+AR DK+LS++EI ++ Sbjct: 417 SDPQLCELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVN 476 Query: 480 ALGTGIG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 A+GTGIG + FD++KLRYHKII+M DADVDG+HI TLLLT F+R P Sbjct: 477 AIGTGIGLPIKSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQ 536 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I NG LYI +PPLY + +G+S YVKD+E L + + + SK+ L Sbjct: 537 IIENGHLYIAQPPLYKLKKGRSEIYVKDDEELSKIV----IDFATDEIAIEGKNFSKSQL 592 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + L + Y DK I+ + N D N ++ L Sbjct: 593 KDIAKLSKEYKNLKESLYKRKDKVVIDTLL---SLNLTEDDIRNKGKVKEVVEFLRQKLP 649 Query: 648 KSEKSW--HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-I 704 E + + ++ +I ++R+ R + ++ + S+ + N ++ Sbjct: 650 SYEIYYKFNPEESDYEIFIERVERFSKVVNKVDIDFLSSYAYLKVKEIENHLKSMLGELP 709 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + + IK+ L D IF G G +QRYKGLGEMN QLWETT+NP TR LL+ Sbjct: 710 VEISYKQKSIKVEDLDDLYDVIFEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRLLQ 769 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V I DA+ AD++FS LMG++VEPRREFI + + LDI Sbjct: 770 VTIEDAALADEVFSILMGEKVEPRREFIMKYAKEVRNLDI 809 >gi|206603337|gb|EDZ39817.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG'] Length = 818 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 340/824 (41%), Positives = 501/824 (60%), Gaps = 27/824 (3%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS Y A+ I++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L G Sbjct: 1 MSSGEPVEEEYTAEHIRVLEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I VT++ D S TV+DNGRGIPT +H E+ SAAEV++T LHAGGKFN YKVSGG Sbjct: 60 HCSEIHVTIHPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS L L I + G I+ ++ G D PL V G GT + F P Sbjct: 120 LHGVGVSVVNALSETLFLEIHQNGLIHRQTYHKGAPDAPLAVFGETA-QRGTIIRFWPDM 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 I F++DTL HR REL+FLN + I L ++ + RE T ++GG+++FVS+L+ + Sbjct: 179 TIMETDQFSFDTLSHRFRELAFLNPVLTIHLKEEET--LREETFHFEGGVQSFVSFLNEN 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTR 298 KK L + D ++A ++ + +E VL F NNI ++GGTH+ G R+A+T+ Sbjct: 237 KKTLHDVLFFRKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I ++ + +K ++ G+D REG T ++S+++P P+F QTK KL SS V +ES Sbjct: 297 TINRFIREKQLNKGEEVR--GEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 F+++ L EE PL AK I +K + + R+AAR+A+DL +RK VL+ ++LPGKLADC Sbjct: 355 FLSEALQEKFEEDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTL 477 E DP KSEL++VEGDSAGGSAKQGR R QAILPL+GKILNVE++R +K +++ E+ L Sbjct: 415 ESDPAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRAL 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA+G G+G++ F KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M LI F+YI Sbjct: 475 ITAVGCGLGEEEFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIA 534 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY ++ G+ +Y+ ++E+L+ Y++ + ++ + + +++ + + + Sbjct: 535 QPPLYKVSYGRQERYLLNDEALQAYILELACADWMFYDEQAGHWLAREEAVAKLLVLVHF 594 Query: 598 DKLIKDFYPNHDKTFIEQAV---ISGVFNCESDQEINVSLASKLA---------NRLNFI 645 ++ ++ + + + +E L S L RL+ Sbjct: 595 EEQVRAHAQRFGNEMLLRLIGMFTETGIEVLKSEEAARRLVSFLTGEYPGWVAGGRLDGQ 654 Query: 646 AEKSEK--SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 E+ H I + G + + VL+ + + + + R Sbjct: 655 VERDPVMAETHPEEEWFRIRFFTESLGYESRLVLDHYLLAQLLAGKRSLRLLRQSGLLFP 714 Query: 704 ILSLICN---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 ++ G++++ P LL + + R+ +S+QRYKGLGEMN QLWETT++P R Sbjct: 715 GGFVLKRGAEGEEVRFRSPRELLSFLETPVRQKLSIQRYKGLGEMNPEQLWETTMDPSRR 774 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +LL+V I D +AD +F+ LMG++V PRREFI++++L LDI Sbjct: 775 TLLKVSIPDYVEADRVFTTLMGEQVAPRREFIEKHALDVANLDI 818 >gi|62185121|ref|YP_219906.1| DNA gyrase subunit B [Chlamydophila abortus S26/3] gi|62148188|emb|CAH63945.1| DNA gyrase subunit B [Chlamydophila abortus S26/3] Length = 806 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 362/819 (44%), Positives = 513/819 (62%), Gaps = 33/819 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DAKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG T+SDNGRGIP H++E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IHVRILEDGGITISDNGRGIPIQTHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNAL+ L + ++ Y+M F G+ L G+ GTE+TF P Sbjct: 121 GGLHGVGVSCVNALAEKLVATVYKDKQAYQMEFSRGVPVTSLQCLGATNKQ-GTEITFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DNKIFSSCVFDRSILIKRLRELAFLNRGVTIIFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I GSR I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPEPIYISGSRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ +K DK S+ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + +E+P AK+IV KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVSQQITGEALTIFFDENPQIAKMIVDKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPAKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++DYL+ + + +F + IS L +F+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGICDSKLVFKNGDREISGEALDSFVKL 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I+ I E + ++ L R ++ + + Sbjct: 600 ILNIENFIVALEKKAVPF------------SEFLEMRKETVGYPLYYRPPQSGKQGGRYF 647 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711 + S + +V + L +SIF+ + R + I S +I N Sbjct: 648 YSSEEKEEEMVSGEDSDSTKVIELYKTSIFAEIQEELRNYGLDIRHYLNPKDSEMVITNE 707 Query: 712 D----KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 D +++ + ++GRKGI +QRYKGLGEMNA QLW+ T+NP+ R+L+RV + Sbjct: 708 DAKTLPYTCYTLKEVIEHLKALGRKGIEIQRYKGLGEMNADQLWDITMNPEQRTLVRVSL 767 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 DA +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 768 KDAVEADHIFTMLMGEEVPPRREFIENHALSVKMNNLDI 806 >gi|15606321|ref|NP_213700.1| gyrase B [Aquifex aeolicus VF5] gi|4033398|sp|O67137|GYRB_AQUAE RecName: Full=DNA gyrase subunit B gi|2983522|gb|AAC07098.1| gyrase B [Aquifex aeolicus VF5] Length = 792 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 335/802 (41%), Positives = 489/802 (60%), Gaps = 15/802 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Y A++I+ + GL+ V+ RP+MYIGD GE GLHH+I+E+LDNA+DE++ GYA Sbjct: 5 QSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDI-GERGLHHLIWEILDNAVDEAVAGYAR 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I+VT++ D S TV D+GRGIP D+H E G A E++ T L AGGKF +K Y SGGLHG Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHG 123 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS WL + + R+G IY M+F G + PL V G GT+V+F P +IF Sbjct: 124 VGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETK-KRGTKVSFKPDPEIF 182 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + +D ++ R+REL++LN V+ L D+R + GIE V YL+ K+P Sbjct: 183 ETTEIKFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKF--DRGIEELVKYLNEGKEP 240 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + IRIQG ++ + +D+A ++ Y E + F NNI +GGTH++G RS L++ + Sbjct: 241 LFKDIIRIQGEKEGVIVDIAFQYVKDYKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIR 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 + +K+ K+S G+D REG T+V++ K+P+P+F QTK KL + V+ +VES D Sbjct: 301 MAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYD 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+++ E+ K IV+K ++A++ R+AA++A++L RRK L+ LPGKLADCSE DP Sbjct: 361 FLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+FLVEGDSAGGSAKQ R R QAILPLRGKI+NVE+AR DK+LS+ EI +++ALG Sbjct: 421 SKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D D+ KLRYHKII+MTDADVDG+HIRTLLLTFF+R MP L+ G++YI +PPLY Sbjct: 481 CGIGEDL-DLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLY 539 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK Y+KD++ E +L+N+ + + K +L + D + + Sbjct: 540 RVKKGKKEIYIKDDKEFEHFLLNEIREKGRLVDAREKE-FKGEELVRLLIDLKDYEDAYR 598 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + V + V + L + + ++ DI Sbjct: 599 ALVKSKGENLVNFLLTHRVREEDLRNPARVKEITHLMEE-ELGDYRVDTKYNELEGAYDI 657 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + G + +++ + + S + + + + K++I + Sbjct: 658 IFYDDKLGTKT--IIDVNFLSSLSYREV-----LEGIHLHLPVQVFFENKKVEINSLGEI 710 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D R G+ +QRYKGLGEMN QLWETT+NP TR L +VKI DA++AD +F+ LMG Sbjct: 711 YDKFMDFARSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMG 770 Query: 783 DEVEPRREFIQENSLPSA-LDI 803 ++VEPRREFI+ + LD+ Sbjct: 771 EQVEPRREFIEAYAKEVKHLDV 792 >gi|89898309|ref|YP_515419.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56] gi|89331681|dbj|BAE81274.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56] Length = 806 Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats. Identities = 365/819 (44%), Positives = 515/819 (62%), Gaps = 33/819 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + SYDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DAKEKSYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEE------GISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG T+SDNGRGIP +H++E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IHVRILEDGGITISDNGRGIPIQVHEKESKKQGRDVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNAL+ L + ++ Y+M F GI L G+ GTE+TF P Sbjct: 121 GGLHGVGVSCVNALAKKLVATVYKDKQTYQMEFSRGIPLTSLQFLGATDKQ-GTEITFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DDKIFSSCIFDRSILIKRLRELAFLNRGVTIIFEDDRDVSFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I G+R I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPEPIYIAGTRTGDDGEIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ +K DK S+ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVLNAYIKAHNLAKNDKLSLTGEDIREGLTAVVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + +E+P AK+IV+KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVAQQITGEMLTTFFDENPQIAKMIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDHRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGSDNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++DYL+ + + +F +S I+ L NF+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDDYLLTLGVEDSTLVFKNSGREINGEALDNFVKL 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I+ I F E + + + R + +E+ E Sbjct: 600 ILNIENFIVALEKKAVP-FSEFLEMHKEVSGYPLYYCPPQSGKQ-GGRYFYSSEEKENEV 657 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS--LICNG 711 + + + V L +S+F+ + R + I S +I N Sbjct: 658 QLNEDVDSVKVV----------ELYKTSVFAEIQEELRDYGLDIRHYLNPKDSEMVITNE 707 Query: 712 DK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 D ++D + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + Sbjct: 708 DSKTLPYTCYTLKEVIDHLKALGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL 767 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 DA +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 768 KDAVEADHVFTMLMGEEVPPRREFIENHALSVKMNNLDI 806 >gi|237756532|ref|ZP_04585059.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691306|gb|EEP60387.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 812 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 351/814 (43%), Positives = 506/814 (62%), Gaps = 25/814 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 N+ Y A++IQ + GLD V+ RP+MYIGD GE GLHH+ +E++DNA+DE++ GYA I Sbjct: 9 QNNTEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLAWEIVDNAVDEAMAGYAKNI 67 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV L+ DGS TV D+GRGIP D+H E I A E++ T L AGGKF++K+Y+ SGGLHGVG Sbjct: 68 TVILHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVG 127 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS WL + + R G IY + G +PL G+ GT+VTF P IF Sbjct: 128 ASVVNALSKWLVVEVYRNGKIYRQEYSYGKPVHPLKEVGTTT-KRGTKVTFKPDDSIFET 186 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F YDT+ R+REL+FLN V+ ++ID+R + + +Y+ GI FV L++ K PL Sbjct: 187 TTFKYDTIAKRIRELAFLNPGVKFTVIDER--KDIKEEFYYENGIIDFVRVLNQAKDPLF 244 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I I+G +D + +++A ++N Y+E + F NNI +GGTH+SG R+ALT+ + + Sbjct: 245 PDVIYIKGEKDGVLVEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFRAALTKSMNKTL 304 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K V GDD REG T+V+S+K+P+P+F QTK KL + +V+ +VES V D L Sbjct: 305 AGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYL 364 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +++ A I +K ++A++ R+AAR+A++++RRK L+ +SLPGKLADCSE +P+ Sbjct: 365 IDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSEDNPEI 424 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 ELF+VEG+SAGGSAKQGR R QAILPL+GKILNVE+AR DK+LS++EI ++ A+GTG Sbjct: 425 CELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTG 484 Query: 485 IG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 IG ++ FD++KLRYHKII+M DADVDG+HI TLLLT F+R P +I NG Sbjct: 485 IGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRYFPQIIENG 544 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LYI +PPLY + +G+S YVKD+E L +I + E ++K +++ Sbjct: 545 HLYIAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSI----EGKNLNKLEIKEVAK 600 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEKSEK 651 + + L + Y DK I++ + + + +E + KL L + Sbjct: 601 LSREYKDLKQSIYKRKDKKVIDEILKLSLTEEDLRSEEKVKEIVEKLKEVLKEY--EVYY 658 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-N 710 + + DI V+R R + ++ + S+ + + E + T+ ++ Sbjct: 659 KYDPEEADYDIFVERRERFSKTVNKIDVDFLSSYAYVRVKEVERILLEKFGTLPIVVNYK 718 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 I + L D I+ G G +QRYKGLGEMN QLWETT+NP TR LL+V I DA Sbjct: 719 DKSITVEDFDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKTRRLLQVSIEDA 778 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + AD++FS LMG++VEPR+EFI + + LDI Sbjct: 779 ALADEIFSILMGEKVEPRKEFIMKYAKEVRNLDI 812 >gi|289549166|ref|YP_003474154.1| DNA gyrase subunit beta [Thermocrinis albus DSM 14484] gi|289182783|gb|ADC90027.1| DNA gyrase, B subunit [Thermocrinis albus DSM 14484] Length = 791 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 342/806 (42%), Positives = 503/806 (62%), Gaps = 18/806 (2%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M + + Y A I+ + GL V+ RPSMYIGD GE GLHH+I+E+LDNA+DE + G Sbjct: 1 MKEKRVLQEEYQAQDIKAVTGLQHVRLRPSMYIGDV-GERGLHHLIWEILDNAVDEHMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 YA ITVT++ D S +V D+GRGIP D+H E GI A +++ T L AGGKF++K Y+ SGG Sbjct: 60 YASHITVTIHADMSVSVEDDGRGIPVDIHPETGIPAVQMVFTVLGAGGKFDKKVYRYSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS WL + + R+GNIY ++ G P+ + G GT+VTF P Sbjct: 120 LHGVGASVVNALSEWLVVEVYRDGNIYRQEYVRGEPTTPVQIVGKT-RKRGTKVTFKPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +D ++ R+REL++LN + L+D+R+ + + GIE V YL R Sbjct: 179 EIFETTKIKFDIVEKRIRELAYLNPNCTFRLVDERTGKDLIYRF--EKGIEELVLYLARG 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+PL++ IR+ G + + +D+A + Y E V F NNI +GGTH++G RS LT+ Sbjct: 237 KEPLIKEVIRVGGEHEGVIVDIAFTYTKDYKEVVESFVNNIKTLEGGTHVTGFRSGLTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K+ K ++ G+D REG +V+S K+PDP+F QTK KL + V+S+VES Sbjct: 297 VMRLLPNIKLQKELKETITGEDLREGLVAVVSCKVPDPQFEGQTKTKLGNQNVKSIVESV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + LS++ +++ ++IV+K ++A++ R+AA++A++L RR+ L+ +LPGKLADCSE Sbjct: 357 VYEQLSSYFDKNRDVLRVIVEKAIEAALAREAAKKAKELVRRRSPLEDTTLPGKLADCSE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP+K ELF+VEG+SAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS++EI +++ Sbjct: 417 KDPEKCELFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLSNEEIKAIVS 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ++G GIG+D D++KLRYH+II+MTDADVDG+HIRTLLLTFF+R MP L+ G+LYI +P Sbjct: 477 SIGCGIGEDM-DLSKLRYHRIILMTDADVDGSHIRTLLLTFFYRYMPKLVEGGYLYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY +GK++ Y+KD+ LE L+ + +E + + L F+ ++++ Sbjct: 536 PLYRAKKGKTVVYLKDDRELEQLLME-DIKKEGYVRDKEGLELRGEKLMEFLKTIREVEE 594 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + + ++ + + ++E S+A KLA L + K E + Sbjct: 595 GYRALVKKKGQEVVDALMKVKPHEKDLREEEKARSVAEKLATLLPDM--KLELRFDEDEG 652 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 +IL+ G ++ ++ + S K L++ + + Sbjct: 653 AFEILLSDERIG--KRVLINVDLLSSLTYKNL-----LEGVGLTPPLTVGVGKREKTLED 705 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 SL I + ++ +QRYKGLGEMN QLWETT+NP TR LLRV I DA++AD +FS Sbjct: 706 LFSLYRDILDLAKENWEIQRYKGLGEMNPEQLWETTMNPATRRLLRVTIEDAAEADRIFS 765 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMG+EVEPRREFI+ + LD+ Sbjct: 766 ILMGEEVEPRREFIEAYAREVRNLDV 791 >gi|222823049|ref|YP_002574622.1| DNA gyrase, subunit B [Campylobacter lari RM2100] gi|222538270|gb|ACM63371.1| DNA gyrase, subunit B [Campylobacter lari RM2100] Length = 772 Score = 805 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 350/806 (43%), Positives = 493/806 (61%), Gaps = 42/806 (5%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +N +Y+A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I Sbjct: 2 QENQNYNAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGFCDTI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + +GSC VSDNGRGIP +H E + V++T LHAGGKF++ +YKVSGGLHGVG Sbjct: 61 NVEITTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L + R+G IY F G + + G TGT + F P IF + Sbjct: 121 VSVVNALSKKLVATVHRDGEIYRQEFSEGKVTSDFETIG-TSKKTGTIIEFWPDDQIFEI 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 TNFDYEILAKRFRELAYLNPKITINFKDNRIGKA--ESFHFEGGISQFVT--DLNKKQAL 235 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+ Sbjct: 236 TKAIFFNVDEEDVNVEVALLYNDSYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYI 295 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ + G+D REG +V+S+K+P+P+F QTK KL SS VR +V + L Sbjct: 296 EANASAREKDSKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K + +LPGKLADC +DP + Sbjct: 356 TKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKETSSVGTLPGKLADCQSKDPSE 415 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G G Sbjct: 416 SEIYLVEGDSAGGSAKQGRERTFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCG 475 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY Sbjct: 476 IG-DEFDIEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRY 534 Query: 545 TR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + K Y+KDE++L DYLI + + I NDL++F+ ++K+ Sbjct: 535 KKGQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYKNVLKE 588 Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + + IE N E + + L + N LN +SE + Sbjct: 589 LEKRFNVISVIRYLIENPDFIKASNEELFKVVKEFLEKQNHNILNSYINESEIRLYVQTE 648 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 N E+ ++ + + +I++ L Sbjct: 649 NG-----------LEELIINDDLFTNPLYEEANYIYQKIKDRDLKFD-----------KD 686 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +LD + +KG +QRYKGLGEMN QLWETT++P+ R LL++ I DA +AD+ F+ Sbjct: 687 ILEILDDVEKNAKKGAYIQRYKGLGEMNPDQLWETTMDPNNRRLLKITIEDAQRADETFN 746 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 MGD+VEPRRE+IQ ++ LD+ Sbjct: 747 LFMGDDVEPRREYIQAHAKDVKHLDV 772 >gi|189485008|ref|YP_001955949.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286967|dbj|BAG13488.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 830 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 371/825 (44%), Positives = 515/825 (62%), Gaps = 27/825 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y A +IQIL+GL+AV+KRP+MYIG T G GLHH++YEV+DN+IDE L GY Sbjct: 9 ESSEKDGYSASNIQILEGLEAVRKRPAMYIGST-GSQGLHHLVYEVVDNSIDEVLAGYCK 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEE---GISAAEVIMTRLHAGGKFNQKSYKVSGG 119 I VT++ D S TV D+GRGIP D H + G+SA E+++T+LHAGGKF++ SYKVSGG Sbjct: 68 NIDVTVHSDNSITVLDDGRGIPVDPHPDPKFKGVSALEIVLTKLHAGGKFDKNSYKVSGG 127 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS LK + R G +Y ++ G P+ +G + GT+VTF P Sbjct: 128 LHGVGVSCVNALSDLLKAEVYRNGKVYVQNYSKGKPLCPVKESGVTE-ERGTKVTFHPDP 186 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IFSV +++DTL +RLREL+FLN+ +I + D+R + I Y GGI+ FV YL+ + Sbjct: 187 EIFSVMKYSFDTLANRLRELAFLNAGTRIRISDERDDDKEHI-FDYNGGIKTFVQYLNTN 245 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + PI +D++ +++AM++ND Y+E + F NNI +GGTHLSG RSALTR Sbjct: 246 KNVINKDPIYFVKEKDDVYVEIAMQYNDSYNELIFTFVNNINTVEGGTHLSGFRSALTRS 305 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y++K+ SK + G+D REG T+++SIK+ DP+F QTK +L +SEV +++S Sbjct: 306 VNEYIKKNEVSKIKDLKLSGEDVREGLTAIISIKVQDPQFEGQTKTRLGNSEVEGIMQSV 365 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D L+ +LEE+P A I+ K ++A+ R+AAR+AR+LTRRKG LD ASLPGKLADCSE Sbjct: 366 VGDALTTFLEENPGIASQILDKAINAAEAREAARKARELTRRKGALDSASLPGKLADCSE 425 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+K+ELF+VEGDSAGGSAKQGR R QAILPL+GKILNVE++R K+L++ EI TLIT Sbjct: 426 RDPQKTELFIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKSRLTKILANDEIRTLIT 485 Query: 480 ALGTGIGQ--DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 A+G GIG+ F+INK+RYHKIIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++YI Sbjct: 486 AIGAGIGKEEQDFNINKVRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPQLLDRGYIYIA 545 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK---GVISKNDLRNFIDDA 594 +PPLY + R K Y+ EE L+ +L Q+L I L + + Sbjct: 546 QPPLYKVRRNKREMYLDSEEELDKFLFQQALDGLSMSLIRDGVEVKEIDYKSLHKIVANI 605 Query: 595 LKIDKLIKDFYPNHDKT-------------FIEQAVISGVFNCESDQEINVSLASKLANR 641 ++D L+K + V SD+E L R Sbjct: 606 SELDILLKKLWKKGVSWKEYLRFKKEGKLPLYRAMKDGSVKYIYSDKEWKEFKDPLLEKR 665 Query: 642 LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 +A + E +D ++ + V + + +S + Sbjct: 666 RELLASQGELDEITENLKTDEVMPEYKDLWELPRVDNLAEQLEEEGLHPEHYSETHAKPV 725 Query: 702 LTILSLICN--GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + G+ ++ L++TI +G KG ++QRYKGLGEMN QLWETT++ Sbjct: 726 YRLQDTEKKVQGEIYELYSTTELIETIRELGNKGATIQRYKGLGEMNPEQLWETTMDIKN 785 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R LL++ + DA + D +F+ LMGD+VEPRR FIQ ++L LDI Sbjct: 786 RKLLQITLEDAIETDRVFTTLMGDQVEPRRLFIQTHALDVRNLDI 830 >gi|269303150|gb|ACZ33250.1| DNA gyrase, B subunit [Chlamydophila pneumoniae LPCoLN] Length = 805 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 362/817 (44%), Positives = 511/817 (62%), Gaps = 30/817 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DPKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSR 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG + DNGRGIP ++H+ E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IDVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS L + ++ Y+M F GI PL SA + GTE+ F P Sbjct: 121 GGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLEYV-SASDRQGTEIVFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN + I D R ++T FY+GGI++FVSYL+ Sbjct: 180 DPKIFSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I G+R I + A++WN GY E V + NNIP + GGTHL+G Sbjct: 240 QNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFA 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y++ +K +K ++ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVS 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + V + L+ + EE+P A++IV KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+ +E LF ++ + L +FI+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINV 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L ++ I F E + + + + L EK E Sbjct: 600 ILDVESFINALEKKAIP-FSEFLEMYKEGIGYPLYYLAPATGMQGGRYLYSDEEKEEALA 658 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + I ++ V I + +Y S+ + +I N D Sbjct: 659 QEETHKFKI--------IELYKVAVFVDIQNQLKEYGLDISSYL--IPQKNEIVIGNEDS 708 Query: 714 ----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +++ + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + D Sbjct: 709 PSCNYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSLKD 768 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 A +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 769 AVEADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 805 >gi|317486106|ref|ZP_07944953.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6] gi|316922629|gb|EFV43868.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6] Length = 795 Score = 802 bits (2072), Expect = 0.0, Method: Composition-based stats. Identities = 351/809 (43%), Positives = 497/809 (61%), Gaps = 20/809 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N ++Y ADSI IL+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY Sbjct: 1 MTANA--NAYTADSITILEGLQAVRKRPAMYIGSTDY-RGLHHLVYEVVDNSIDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L+MD S TV DNGRGIP D+H +E + A +V+MT+LHAGGKF+ +YKVSGGL Sbjct: 58 CTRIEVVLHMDNSVTVRDNGRGIPVDIHPKEKVPAVQVVMTKLHAGGKFDNSAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L++ ++R+G ++ + G+ L G + + GT V F P Sbjct: 118 HGVGVSCVNALSERLEVTVRRDGKRWKQVYSRGVPQEELQYIGES-DSHGTTVRFKPDET 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F+YDTL+ R EL++LN +QI D+R+ E +GGI FV L+ + Sbjct: 177 IFETTEFSYDTLKKRFEELAYLNKGLQIECRDERTSEVH--LFHAEGGIHQFVKDLNSGE 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +G D +S++ A+++N GY EN+ F NNI K+GGTHL+G ++ALTR I Sbjct: 235 VGIHAIVD-GEGVADGVSVEFAIQYNAGYKENMYTFANNIRTKEGGTHLAGFKTALTRAI 293 Query: 301 TSYVEKSFGS--KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 +Y++ K +++ GDD REG T+VLS+K+P P+F QTK KL +SEV +V Sbjct: 294 NNYIKSQPDLTKKMKGQALSGDDVREGLTAVLSVKLPQPQFEGQTKTKLGNSEVAGIVGG 353 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V L + +E+P +A++I+ K +DAS RDAARRA++L RRKG L +LPGKLADC Sbjct: 354 VVYGKLDTYFQENPKDARLIIDKAVDASRARDAARRAKELVRRKGALSDNALPGKLADCQ 413 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SELF+VEGDSAGGSAKQGR+ QAILPLRGKILN ER RFDKML+++E+ LI Sbjct: 414 SKDPADSELFIVEGDSAGGSAKQGRNPNTQAILPLRGKILNTERTRFDKMLANKEVKALI 473 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG++ D +KLRYHKI+IMTDADVDGAHIRTLLLTFFFR LI G+LYI + Sbjct: 474 TAMGAGIGEEDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRNYAGLIDRGYLYIAQ 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +++KD+ L +L+ + +S+++E+ + + +++ + I Sbjct: 534 PPLYRAHNSRMEKFIKDDYELNAFLMQR-VSDDMEVEAPNGTLFRGEEIKALMGQIENIS 592 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK--SWHGS 656 + + + I + + + + E + + +F+ E+ + + + Sbjct: 593 HRV----RDAELAGINRDLFLALVDVE--DRVTPDCLTSGTRCYDFLKERGYELTTETEA 646 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIK 715 + D + I + + S + I ++ L + Sbjct: 647 HEDGDRVFALIENANGHRTRVSVEFFISKMYLNSWEALDAIRQKCGGLSFMLRNKEQEYA 706 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + L RKG+++QRYKGLGEMN QLW TT+NP+ R+LLRV + DA A D Sbjct: 707 ASDIFDLHALTLEEARKGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLRVTVEDAEAASD 766 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 F +LMGD VEPRREFI+ N+L LDI Sbjct: 767 TFEQLMGDRVEPRREFIERNALTVRDLDI 795 >gi|305432569|ref|ZP_07401730.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli JV20] gi|304444280|gb|EFM36932.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli JV20] Length = 770 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 354/799 (44%), Positives = 499/799 (62%), Gaps = 32/799 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I + Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDTIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L R REL++LN + I+ D R + + ++GGI FVS D +KK + Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFVS--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 PIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +V+S+K+P+P+F QTK KL SS VR +V + LS Sbjct: 296 NASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534 Query: 547 -GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 K Y+KDE++L DYLI + + I NDL++F+ ++ + Sbjct: 535 GQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYRSVLNELK 588 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + + + +I N + +E N L + L ++ + IN ++I + Sbjct: 589 KRFNVISVIRYLIE---NPDFIKENNEELFKIVKAFLE---KEGHNILNHYINENEIRIY 642 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 E+ ++ + N+I++ L+ +LD Sbjct: 643 VQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE-----------KDILDILDE 691 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + +KG +QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ MGDEV Sbjct: 692 VEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEV 751 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR++IQ ++ LD+ Sbjct: 752 EPRRDYIQTHAKDVKHLDV 770 >gi|317155005|ref|YP_004123053.1| DNA gyrase subunit B [Desulfovibrio aespoeensis Aspo-2] gi|316945256|gb|ADU64307.1| DNA gyrase, B subunit [Desulfovibrio aespoeensis Aspo-2] Length = 797 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 359/807 (44%), Positives = 506/807 (62%), Gaps = 14/807 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN Y A+SI L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSDN----QYTAESITHLEGLAAVRKRPAMYIGSTD-IRGLHHLVYEVIDNSIDEAMAGY 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTL+MD SCTV+DNGRGIP ++H +EGI A ++ MT LHAGGKF+ SYKVSGGL Sbjct: 56 CDTIKVTLHMDNSCTVTDNGRGIPVEIHPKEGIPAVQMAMTMLHAGGKFDNDSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS +++ ++R G Y M F G + + L G + + TGT F P D Sbjct: 116 HGVGVSCVNALSEFMETTVRRNGKTYRMKFERGAVVHELEELGPS-DATGTTQRFRPDED 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF V F+YDTL+ R REL++LNS ++I D+RS + + GGI +V L+ + Sbjct: 175 IFEVNQFDYDTLRKRFRELAYLNSGLEIEFKDERSGDN--EKFKFDGGIRQYVKDLNSGQ 232 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + +G +N+ ++ A+++ GY EN F NNI +GGTHL+G ++ALTR I Sbjct: 233 NV-IGEIVYGEGKSENMIVEFALQYTAGYKENTYTFANNIRTIEGGTHLAGYKTALTRAI 291 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +YV+ KK + + GDD REG TSV+S+K+PDP+F QTK KL +SE +V + Sbjct: 292 NNYVQNGDLPKKLIKKLTGDDVREGLTSVISVKLPDPQFEGQTKTKLGNSEASGLVAGVI 351 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ + EE+P EA+ I++KV+DAS R+AAR+ARDL RRKG L SLPGKLADC + Sbjct: 352 YEKLNVFFEENPKEARFIIEKVVDASRAREAARKARDLVRRKGALSDNSLPGKLADCQSK 411 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P+ SE+F+VEGDSAGGSAKQGR ++QAILPLRGKILNVE+ R DKML ++EI +ITA Sbjct: 412 RPEDSEIFIVEGDSAGGSAKQGRDPKHQAILPLRGKILNVEKTRMDKMLGNKEIRAMITA 471 Query: 481 LGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 LG GIG +D D +KLRYHK++IMTDADVDG+HIRTLLLTFFFRQ LI G LYI + Sbjct: 472 LGIGIGHEEDEQDYDKLRYHKVVIMTDADVDGSHIRTLLLTFFFRQYEELITRGNLYIAQ 531 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY +GK +++KD+ LE +L+ + ++ + S + L + + Sbjct: 532 PPLYRAHKGKFEKFIKDDIELETFLME-KVGTDVIIKAQSGKRFIEKQLMEMMTSIRFVR 590 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + + + + QA+++ + + A + ++ H + Sbjct: 591 QKFTEVETVGVEPGLFQALMNHDERISFTHFESHDHEAFKARFEALGYKAYIETEHDAEM 650 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKIT 717 + D + L S K + +++ + +L+ + ++ Sbjct: 651 DKDRTYVTFESSNGHRMRLAMEFFHSKLYKQAYKTYTDLKQACGGFDFALVLKDGEKPVS 710 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 G +L D++ ++G +QRYKGLGEMN QLWETT++P+ R++L+V I DA+ A+D+F Sbjct: 711 GIFALYDSVIEEAQRGWQIQRYKGLGEMNPEQLWETTMHPEKRTMLQVTIEDAAGANDIF 770 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VEPRR FI++N+L LDI Sbjct: 771 MDLMGDNVEPRRAFIEKNALAVQELDI 797 >gi|15835080|ref|NP_296839.1| DNA gyrase subunit B [Chlamydia muridarum Nigg] gi|270285247|ref|ZP_06194641.1| DNA gyrase subunit B [Chlamydia muridarum Nigg] gi|270289266|ref|ZP_06195568.1| DNA gyrase subunit B [Chlamydia muridarum Weiss] gi|301336643|ref|ZP_07224845.1| DNA gyrase subunit B [Chlamydia muridarum MopnTet14] gi|13627141|sp|Q9PKK3|GYRB_CHLMU RecName: Full=DNA gyrase subunit B gi|7190505|gb|AAF39313.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg] Length = 804 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 360/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG +VSDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS + ++G Y M F G L V GS + GTE+ F P Sbjct: 121 GGLHGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQVLGST-DKRGTEILFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 +FS F+ L RLREL+FLN + I D R ++T FY+GGI++FVSYL+ Sbjct: 180 DPTVFSTCVFDRAILMKRLRELAFLNRGITIIFEDDRDAGFDKVTFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI IQGS+ +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ +K DK S+ G+D REG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG D+F+++KLRY ++IIMTDADVDG+HIRTLLLTFF+R M +LI NG Sbjct: 480 IGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALIENGC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L +F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTRESRVVFDDTARELEGTALESFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ G + + N L EK Sbjct: 600 ILEVESFIIALEKRAIPFSEFLD-MFRDGAYPLYYYP---PESGKQGGNYLYSNEEKEAA 655 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + I+ + + E Y + +T+ + Sbjct: 656 VAANEEAAARII------ELYKASAFEEIQHNLNEYGYDIRHYLHPKGTGITVSTEDSKT 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 PNYTCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 +AD +F+ LMG+EV PRREFI+ ++L S LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMSNLDI 804 >gi|57504599|ref|ZP_00370711.1| DNA gyrase, B subunit [Campylobacter coli RM2228] gi|57019494|gb|EAL56188.1| DNA gyrase, B subunit [Campylobacter coli RM2228] Length = 770 Score = 801 bits (2069), Expect = 0.0, Method: Composition-based stats. Identities = 354/799 (44%), Positives = 499/799 (62%), Gaps = 32/799 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I + Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDTIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L R REL++LN + I+ D R + + ++GGI FVS D +KK + Sbjct: 180 FDYDILAKRFRELAYLNPKITINFKDNRVGKS--ESFHFEGGISQFVS--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 PIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +V+S+K+P+P+F QTK KL SS VR +V + LS Sbjct: 296 NASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIVSKASFEYLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534 Query: 547 -GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 K Y+KDE++L DYLI + + I NDL++F+ ++ + Sbjct: 535 GQKKEIYLKDEKALNDYLIETGIE------SSNYEGIGLNDLKDFLKIVAAYRSVLNELK 588 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + + + +I N + +E N L + L ++ + IN ++I + Sbjct: 589 KRFNVISVIRYLIE---NPDFIKENNEELFKIVKAFLE---KEGHNILNHYINENEIRIY 642 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 E+ ++ + N+I++ L+ +LD Sbjct: 643 VQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE-----------KDILDILDE 691 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + +KG +QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ MGDEV Sbjct: 692 VEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEV 751 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR++IQ ++ LD+ Sbjct: 752 EPRRDYIQTHAKDVKHLDV 770 >gi|158520112|ref|YP_001527982.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3] gi|158508938|gb|ABW65905.1| DNA gyrase, B subunit [Desulfococcus oleovorans Hxd3] Length = 814 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 353/821 (42%), Positives = 511/821 (62%), Gaps = 25/821 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +Y+ SI +L+GL+ V+KRPSMYIG+ D E GLHH++YEV+DN+IDE++ GY Sbjct: 1 MKKEEIKEAYNESSINVLEGLEPVRKRPSMYIGNVDKE-GLHHLVYEVVDNSIDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D + +V DNGRGIP +H++E + A EV++T+LHAGGKF+ +YKVSGGL Sbjct: 60 CDFIHVIIHKDNTVSVVDNGRGIPVGMHEKEHVPAVEVVLTKLHAGGKFDNNNYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALSS+L++ + R+G IY+ +F G + L + G GT++ F P + Sbjct: 120 HGVGISVVNALSSFLEVNVYRDGKIYKQTFSEGQKTSELEIIGDTT-QRGTKIIFKPDTT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I + +F++D L RLREL+FLN+ V+I + D RS E FY+GG+ FV YL+R Sbjct: 179 IMNTDNFSFDILTRRLRELAFLNNGVRIKIEDHRSDESA--EFFYEGGLATFVDYLNRAH 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L PI I G ++++ I+ A+++ND Y E + F NNI +GG HL G + ALTR I Sbjct: 237 AVLH-KPIYISGEKNDVQIEAAIQYNDSYSETMYSFANNINTVEGGFHLIGFKGALTRSI 295 Query: 301 TSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y G K + GDD REG T+V+S+++ +P+F QTK KL +SEV+ V+S Sbjct: 296 NQYAASQGGGSSKKNGDKITGDDVREGLTAVISVRIKNPQFEGQTKTKLGNSEVKGYVDS 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + L+ +LEE+P KII+KK +A+ R+AA++ARD+ R +G L +SLPGKLA+C Sbjct: 356 LVYEKLNIFLEENPSVGKIIIKKATEAARARNAAKKARDIARSQGSLLDSSLPGKLAECQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 P + ELFLVEGDSAGGSAKQGR R QAILPL+GKILN+E+ARFDK+L S+EI +I Sbjct: 416 SSIPAERELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNIEKARFDKILKSEEIKNII 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 T LGTG+G + ++I K++YHK+IIMTDADVDGAHIRTLLLTFFFRQM LI G LYI + Sbjct: 476 TVLGTGVGSEEYNIEKIKYHKVIIMTDADVDGAHIRTLLLTFFFRQMQDLIKQGHLYIAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ + RGK Y+ E L+DY I + E + + + ++L F+ + + Sbjct: 536 PPLFKVGRGKKEVYIDSELLLKDYFIQN--ACEKKYVKTGEKKLQDHELYLFLCNLSEFI 593 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + + + + +I +S + +A+ + ++ Sbjct: 594 SEMAGLKRRGYNSKLIETLIRQNIREKSLLQDRDRVAALQQTLSENGFVVDDVLYNEEKE 653 Query: 659 NSDILVKRIARGVQEQFV------------LEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + LV +E+ V + + I+S + + S +I + + Sbjct: 654 MYEFLVTIPLHEDEEEAVTGSAKKDIKPVRIGRNLIYSNRYQNIVMLSEKIAPYNVPPFT 713 Query: 707 LICNG---DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLL 763 + + ++ + L + ++G+KG+ QRYKGLGEMNA QLW+TT+ P+TR LL Sbjct: 714 VYNSDTDQEEARFDTVKQLYQYMEALGKKGVVFQRYKGLGEMNADQLWQTTMEPETRKLL 773 Query: 764 RVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +V I DA++AD +F+ LMGD VEPR++FIQEN+L LDI Sbjct: 774 KVTIDDAAEADAVFTLLMGDVVEPRKKFIQENALEVETLDI 814 >gi|330444523|ref|YP_004377509.1| DNA gyrase subunit B [Chlamydophila pecorum E58] gi|328807633|gb|AEB41806.1| DNA gyrase, B subunit [Chlamydophila pecorum E58] Length = 801 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 363/819 (44%), Positives = 515/819 (62%), Gaps = 38/819 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 +I+ +YDA +I +L+GL AV++RP MYIGD G SGLHH++YEV+DN+IDE+L GY Sbjct: 2 DIEVKNYDASAITVLEGLQAVRERPGMYIGD-AGISGLHHLVYEVIDNSIDEALAGYCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG T+SDNGRGIP ++HK E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 INVRILEDGGITISDNGRGIPVEIHKRESEKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS L + + IY+M F G+ + PL G+ N GT +TF P Sbjct: 121 GGLHGVGVSCVNALSEKLVATVCKGQQIYQMEFSRGVPETPLQRLGATENQ-GTTITFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFSV F+ L RLREL+FLN ++I D R ++T FY+GGI++FV+YL+ Sbjct: 180 DPKIFSVCVFDRSILMKRLRELAFLNRGIRIHFEDDRDVSFDKVTFFYEGGIQSFVNYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I G R + + +++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKESLFPEPIYIFGVRPGDDGDAEFEASLQWNSGYSELIYSYVNNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + +Y++ + +K +K S+ G+D REG T+V+S+K+P+P+F QTK+KL + V Sbjct: 300 TALTRVLNAYIKANNLAKNEKLSLTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNGSVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + +E+P AK+IV+KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVAQQVTGEVLTTFFDENPQIAKLIVEKVFIAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEVYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F++ KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGSDTFNLEKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E ++DYL+ + E +F D++ +S + L +F+ Sbjct: 540 VYIAQPPLYKVSKKKEFRYILSENEMDDYLLTLGMGECRAVFTDTQRELSGDALDSFVKV 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I+ I E+ ++S Sbjct: 600 ILSIESFITALEKK-------------AIPFSEFLEMYKDSLGYPLYYCTPNKKESGMYL 646 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT---ILSLICN 710 + IL + + V+ L S+F + + I + + ++ + Sbjct: 647 YSEEEKDQILAREEVKIVE----LYKPSVFLEIQNQLQDYGMDIRNYLIPQTHPIQILSD 702 Query: 711 GDKI---KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 KI +++ + +IGRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + Sbjct: 703 DSKILPYTCYTLQEVINYLKTIGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIRVSL 762 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 DA +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 763 KDAVEADHVFTMLMGEEVPPRREFIESHALSIRMNNLDI 801 >gi|42521654|ref|NP_967034.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100] gi|39574184|emb|CAE77688.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100] Length = 806 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 363/816 (44%), Positives = 521/816 (63%), Gaps = 23/816 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + SY ADSIQ+L+GL+AV+KRP MYIGDT G HH++YE++DN++DE L GY Sbjct: 1 MSAE-EQKSYSADSIQVLEGLEAVRKRPGMYIGDT-AFKGYHHLVYEIVDNSVDEHLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V++N D S TV D+GRGIP K+ G SA E++MT LHAGGKF+ YKVSGGL Sbjct: 59 CKKISVSINADESITVEDDGRGIPVATQKQTGKSALELVMTVLHAGGKFDGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS + + ++REG+ + ++ G + P+ G TGT+VTF P Sbjct: 119 HGVGASVVNALSDRVSVEVQREGHFWRQNYERGKILAPVAQ-GETTTKTGTKVTFKPDRT 177 Query: 181 IFSVQDFNYD--TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF + +YD TL +R REL+FLN+ + ISL D+R+ + ++ Y G+ FV Y+++ Sbjct: 178 IFKDETLSYDFTTLANRFRELAFLNAGLHISLTDERNGKKQD--FQYSEGVAEFVKYMNQ 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 KK L + +G +DN+ +++AM+WND Y E+V + NNI +GGTHL G R+ALTR Sbjct: 236 SKKSLHNEVVYFKGEKDNVEVEIAMQWNDSYSESVFTYCNNINTHEGGTHLVGFRAALTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 +Y + K K ++ G+D REG +V+S+K+ +P+F QTK KL ++EV+ +VE+ Sbjct: 296 TTNAYATEKNLLKDLKANLEGEDIREGLAAVISVKVREPQFEGQTKTKLGNAEVKGIVET 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 VN+ L+ W++ +P AK I+ K ++++ R+AAR+ARDLTRRK VLD SLPGK+ADC Sbjct: 356 LVNEKLADWMDRNPSVAKNIIMKCVESARAREAARKARDLTRRKTVLDGGSLPGKMADCQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP EL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDK++SS+EI +I Sbjct: 416 ERDPALCELYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKIISSEEIKVII 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +ALGTGIG+D+ +++K+RYHKIIIMTDADVDG+HI TLLLTFF+RQMP ++ G++YI + Sbjct: 476 SALGTGIGKDNVNVDKIRYHKIIIMTDADVDGSHIMTLLLTFFYRQMPLVLERGYVYIAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY +GK Y+K+E +L +YL++ L K + + DLR I + + + Sbjct: 536 PPLYRAKKGKEETYLKNEAALTEYLLSSGLGN---FKIKGKESLPEKDLRQLILNIQRFN 592 Query: 599 KLIKDFYPNHDKTFIEQAV--ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 L++ +DK + + ++ +D + + + L +N + G Sbjct: 593 DLLRVSSKKYDKDVLYFLLSKVTDFEKTFTDAKKIEQVLTDLGAWVNSDQTLGITEYKGE 652 Query: 657 INNS--------DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + DI R A + +F + + S R I+ L+++ Sbjct: 653 VKTEAETGKMYADIYTVRYADRMTTKFSTDN--LRSSEIIELRKIWADIQAISTLPLTIL 710 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 ++++ + +KGI +QRYKGLGEMN QLWETTLN + R+LL+V I Sbjct: 711 EGDNEVQFENYNDFYTHVMESTKKGIYIQRYKGLGEMNPEQLWETTLNKENRTLLKVTID 770 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 DA AD+ FS LMG+ VEPRR+FI +N+L + LD+ Sbjct: 771 DAVAADETFSILMGEMVEPRRQFIHDNALLARSLDV 806 >gi|255506765|ref|ZP_05382404.1| DNA gyrase subunit B [Chlamydia trachomatis D(s)2923] Length = 804 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 361/815 (44%), Positives = 509/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVIFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI IQGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+F + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEEFQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804 >gi|76788912|ref|YP_327998.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13] gi|237804536|ref|YP_002888690.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT] gi|76167442|gb|AAX50450.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13] gi|231272836|emb|CAX09745.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT] Length = 804 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 359/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI +QGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLHSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804 >gi|255348547|ref|ZP_05380554.1| DNA gyrase subunit B [Chlamydia trachomatis 70] gi|255503087|ref|ZP_05381477.1| DNA gyrase subunit B [Chlamydia trachomatis 70s] gi|289525228|emb|CBJ14704.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2] gi|296434776|gb|ADH16954.1| DNA gyrase subunit B [Chlamydia trachomatis E/150] gi|296438496|gb|ADH20649.1| DNA gyrase subunit B [Chlamydia trachomatis E/11023] Length = 804 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 360/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGHEISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVIFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI IQGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQIGGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804 >gi|237802614|ref|YP_002887808.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT] gi|231273848|emb|CAX10638.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT] Length = 804 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 359/815 (44%), Positives = 507/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRDN----ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI +QGSR I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYMQGSRPRDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLHSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804 >gi|34556461|ref|NP_906276.1| DNA gyrase subunit B [Wolinella succinogenes DSM 1740] gi|34482175|emb|CAE09176.1| DNA GYRASE SUBUNIT B [Wolinella succinogenes] Length = 772 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 344/800 (43%), Positives = 497/800 (62%), Gaps = 29/800 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +QN Y AD+I++LKGL+AV+KRP MYIGDT+ +GLHH+IYEV+DN+IDE++ G+ + I Sbjct: 1 MQNQQYSADNIKVLKGLEAVRKRPGMYIGDTN-VNGLHHLIYEVVDNSIDEAMAGHCNTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++TL +GS + DNGRGIP D+H E + AA V++T LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 SITLTKEGSAIIEDNGRGIPVDMHPTENLPAATVVLTVLHAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L + I++ GN+Y F GI L + G GT + F+P +IF V Sbjct: 120 VSVVNALSKKLVMTIRKNGNVYTQEFSCGIPKTGLDIIG-TSKKNGTTIEFIPDDEIFEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+ + L R +EL++LN ++ I D+R + + ++GG+ FV + +KK L+ Sbjct: 179 TVFDREVLARRFKELAYLNRNITIHFKDER--DNFNESYHFEGGLRQFVEH--LNKKVLV 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + +++A+ +NDGY E VL F NNI +GGTH +G R+ L+R ITSY+ Sbjct: 235 SQVFSFSDNESDTEVEIALAYNDGYDEKVLSFVNNIKTPEGGTHEAGFRAGLSRAITSYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + +++ + GDD REG +++S+K+ +P+F QTK KL SS V+ +V+ + + Sbjct: 295 DANANAREKDNKITGDDVREGLVAIVSVKVMEPQFEGQTKGKLGSSFVKPIVQKLTYEKI 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P +AK I++K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP Sbjct: 355 AKFFEENPNDAKAIMQKALMAARGREAAKKARELTRKKDSLMVGTLPGKLADCQSKDPSI 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG G Sbjct: 415 SELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDIN++RY KIIIMTDADVDG+HI+TLLLTFFFR + +I G+LYI +PPLY Sbjct: 475 IGEE-FDINRIRYQKIIIMTDADVDGSHIQTLLLTFFFRYLKPVIEAGYLYIAQPPLYRF 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y++DE++L +YLI + + DL + A +K+ Sbjct: 534 KKGKKEIYLRDEKALSEYLIENGIENFAF------EGVGTPDLLEILRFASHYRLTLKEL 587 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + + E I++ ++ F+ +K + + I + Sbjct: 588 EKRF------AMIDVVKYMIEHRDLISLPMSELYIKLEEFVQQKGYNILNKRVEEEKIHL 641 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 V++ S + N I E L+ L G+K ++L+ Sbjct: 642 YVQTHEGLVDLVIDDSLFTHPLFEEAYYVHNLILERDLSFL-----GEK----DILTILE 692 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 I +KG +QRYKGLGEMN QLWETT+ P+ R LL+V+ITD +A D+FS MGDE Sbjct: 693 EIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLKVQITDDMEASDVFSLFMGDE 752 Query: 785 VEPRREFIQENSLPSA-LDI 803 VEPRR +IQ+++ LD+ Sbjct: 753 VEPRRAYIQDHAKDVKHLDV 772 >gi|15604910|ref|NP_219694.1| DNA gyrase subunit B [Chlamydia trachomatis D/UW-3/CX] gi|255310990|ref|ZP_05353560.1| DNA gyrase subunit B [Chlamydia trachomatis 6276] gi|255317291|ref|ZP_05358537.1| DNA gyrase subunit B [Chlamydia trachomatis 6276s] gi|6647525|sp|O84193|GYRB_CHLTR RecName: Full=DNA gyrase subunit B gi|3328595|gb|AAC67782.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX] gi|296435705|gb|ADH17879.1| DNA gyrase subunit B [Chlamydia trachomatis G/9768] gi|296436629|gb|ADH18799.1| DNA gyrase subunit B [Chlamydia trachomatis G/11222] gi|296437565|gb|ADH19726.1| DNA gyrase subunit B [Chlamydia trachomatis G/11074] gi|297140064|gb|ADH96822.1| DNA gyrase subunit B [Chlamydia trachomatis G/9301] gi|297748320|gb|ADI50866.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC] gi|297749200|gb|ADI51878.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC] Length = 804 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 359/815 (44%), Positives = 508/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN V I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGVTIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI +QGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYMQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIESHALSIRMNNLDI 804 >gi|188996890|ref|YP_001931141.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931957|gb|ACD66587.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 812 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 353/817 (43%), Positives = 510/817 (62%), Gaps = 26/817 (3%) Query: 3 DNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 DNIQN+ Y A++IQ + GLD V+ RP+MYIGD GE GLHH+++E++DNA+DE++ GYA Sbjct: 6 DNIQNNIEYSAEAIQAVTGLDHVRARPAMYIGDI-GERGLHHLVWEIVDNAVDEAMAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I+V L+ DGS TV D+GRGIP D+H E I A E++ T L AGGKF++K+Y+ SGGLH Sbjct: 65 KNISVILHQDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS WL + + R G IY + G +PL G+ GT+VTF P I Sbjct: 125 GVGASVVNALSKWLVVEVYRNGKIYRQEYSYGKPAHPLKEIGTTT-KRGTKVTFKPDDSI 183 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F YDT+ R+REL+FLN V+ ++ID+R + + +Y+ GI FV L++ K Sbjct: 184 FETTTFKYDTIAKRIRELAFLNPGVKFTVIDER--KDIKEEFYYENGIIDFVRVLNQAKD 241 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL I I+G +D + +++A ++N Y+E + F NNI +GGTH+SG R+ALT+ + Sbjct: 242 PLFPDVIYIKGEKDGVLVEVAFQYNTSYNETLESFVNNIKTVEGGTHVSGFRAALTKSMN 301 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 + K+ K V GDD REG T+V+S+K+P+P+F QTK KL + +V+ +VES V Sbjct: 302 KTLAGMKLPKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVG 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D L + +++ A I +K ++A++ R+AAR+A++++RRK L+ +SLPGKLADCSE + Sbjct: 362 DYLIDFFDKNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSEDN 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P+ ELF+VEG+SAGGSAKQGR R QAILPL+GKILNVE+AR DK+LS++EI ++ A+ Sbjct: 422 PEICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAI 481 Query: 482 GTGIG------------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 GTGIG ++ FD++KLRYHKII+M DADVDG+HI TLLLT F+R P +I Sbjct: 482 GTGIGLPIKSEDEENKTEEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRYFPQII 541 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 NG LY+ +PPLY + +G+S YVKD+E L +I + E ++K +++ Sbjct: 542 ENGHLYLAQPPLYKLKKGRSEIYVKDDEELAKIVIEYASDEVSI----EGKNLNKLEIKE 597 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE-SDQEINVSLASKLANRLNFIAEK 648 + + L + Y DK I++ + + + +E + KL L + Sbjct: 598 VAKLSREYKDLKQSIYKRKDKKVIDEILKLSLTEEDLRSEEKVKEIVEKLKEVLKEY--E 655 Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + + DI V+R R + ++ + S+ + + E T+ ++ Sbjct: 656 VYYKYDPEEADYDIFVERKERFSKTVNKIDVELLSSYAYVRVKEVERILLEKLGTLPIIV 715 Query: 709 C-NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I + L D I+ G G +QRYKGLGEMN QLWETT+NP TR LL+V I Sbjct: 716 NYKDKSITVEDLDKLYDVIYEAGMTGCEIQRYKGLGEMNPEQLWETTMNPKTRRLLQVNI 775 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA+ AD++FS LMG++VEPR+EFI + + LDI Sbjct: 776 EDAALADEIFSILMGEKVEPRKEFIMKYAKEVRNLDI 812 >gi|88607620|ref|YP_505297.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ] gi|88598683|gb|ABD44153.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ] Length = 793 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 405/803 (50%), Positives = 542/803 (67%), Gaps = 20/803 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SSY+A SI +L+GLDAVKKRP MYIGDTD SGLHHM YEV+DNAIDE+L G+ + I + Sbjct: 2 SSYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIV 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V+DNGRGIP D+H+EEGISAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSV Sbjct: 62 IAADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSSWL+L I +EG Y M F G PL + G GN GT V F+PSSD+FS DF Sbjct: 122 VNALSSWLELVIYKEGREYFMRFEEGKAVAPLKMVGECGNKKGTCVRFMPSSDVFSFTDF 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFY-----KGGIEAFVSYLDRHKKP 242 +Y TL++R+RELSFLNS+V ISL D R E G+ FV YLDR+K P Sbjct: 182 SYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLDRNKTP 241 Query: 243 LMQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + S IS++++M WND Y+EN+LCFTNNI Q++GGTHL+G RSALTR + Sbjct: 242 VTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSALTRCVN 301 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y KK K S+IG+D REG T VLSIKMPDPRFSSQTK+KLVSSE R VVES + Sbjct: 302 NYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVVESIMF 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + LS+ E +P A +V++V+ ++ R+AAR+AR++ + +G LD S+PGKLADC E+ Sbjct: 362 EKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLADCQEKS 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P+ SELF+VEG+SAGGSAKQGR R QA+L LRGKILNVER D+ LSS EI +LI A+ Sbjct: 422 PELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITSLIMAI 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G+ IG SFDI+K+RYHKIIIMTDADVDG+HIRTLLLTFFFR M LI G+LYI +PPL Sbjct: 482 GSNIGIGSFDISKVRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYLYIAQPPL 541 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y +T+ K Y+K++E+L DY++ + + G S ++L+ + ++I + Sbjct: 542 YKLTKHKKDTYIKNDEALSDYIVGNATKNLVL---SGAGECSGDELKAVLRKCVRIANIT 598 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNS 660 K + + +E ++ + + +S++ +N + + E W+ + + Sbjct: 599 KTYSRIVPQEVLEALIV-------RYKRHGMGSSSEIMAYMNSMFPEYE--WNVEVLEDG 649 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 + + ++++G+ +++ L+ + + + + IE + L I++ PC Sbjct: 650 RLQILKLSQGMVDRYYLDADFMNTRDVQTILSVLDGIENVFTEDTVLTAKDCTIRVHSPC 709 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L ++ GRK +++QR+KGLGEMNA QLW+TTLNP TR+LL+VKI DA AD +FS L Sbjct: 710 VLASSVVEFGRKDMALQRFKGLGEMNADQLWDTTLNPQTRTLLKVKIADAEAADAIFSVL 769 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD VEPRR+FI N+L +D Sbjct: 770 MGDFVEPRRDFINNNALKVQNID 792 >gi|157414325|ref|YP_001481581.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116] gi|157385289|gb|ABV51604.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116] Length = 769 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKANNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|320355370|ref|YP_004196709.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032] gi|320123872|gb|ADW19418.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032] Length = 803 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 358/813 (44%), Positives = 515/813 (63%), Gaps = 20/813 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + +SY A+ I++L GL+AV+KRPSMYIG+T G GLHH+IYEV+DN+IDE+L G+ Sbjct: 1 MSE-LTETSYGAEQIKVLDGLEAVRKRPSMYIGNT-GVEGLHHLIYEVVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D + TV DNGRGIP D+H E +SA E++MT LHAGGKF+ +YKVSGGL Sbjct: 59 CDQISIVIHEDNAVTVEDNGRGIPVDMHPTENMSALELVMTTLHAGGKFDHSTYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +++R G IY ++ G+ + L V G TGT ++F P Sbjct: 119 HGVGVSVVNALSVRTVAQVQRNGKIYRQTYEYGMRTSELEVIG-TSEQTGTSISFKPDPS 177 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F Y+ +++R+REL+FLN ++ I+L D+R GGI ++V YL+R+ Sbjct: 178 IFTETTVFEYEIVKNRMRELAFLNKNIHITLKDERDGAENSFHF--DGGIVSYVEYLNRN 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + PI I G RD + +D+ +++ DGY E + F NNI K+GG+H++G R+ALT+ Sbjct: 236 RTTVHPDPILISGERDTVQVDICLQYFDGYSERLFSFVNNINTKEGGSHVAGFRAALTKC 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K K + GDD REG T V+S+++P+P+F QTK KL +SEV+S+VES Sbjct: 296 INRYASDDIIPKHLKEKMGGDDVREGLTCVISVRVPNPQFEGQTKTKLGNSEVKSIVESL 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 N+ L A+LE++P A+ I+ K ++A+ R+AAR+ARDL+R K + + + GKLA+C Sbjct: 356 CNEKLGAYLEQNPAVARGILNKAVEAARAREAARKARDLSRTKSNISVM-MAGKLAECQS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P + ELF+VEGDSAGGSAKQGR R QAILPLRGKI+NVE+ARFDK+L S+EI L+ Sbjct: 415 KNPAERELFIVEGDSAGGSAKQGRDRAIQAILPLRGKIMNVEKARFDKILDSEEIKQLVA 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +LGTGIG + FD+ KLRYHKIIIMTDADVDGAHIRTLLLTFF+RQM LI NG +YI +P Sbjct: 475 SLGTGIGSEEFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLIENGHVYIGQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + +GK QY +EE L Y + S+ + + + + I++++L + ++ Sbjct: 535 PLYRLGKGKKEQYFLNEEELNAY-LYAQASQLMRIRTEQEVEIAEDELVTVLRKLSAFER 593 Query: 600 LIKDFYP-NHDKTFIEQAVISGVFNCESDQ--EINVSLASKLANRLNFIAEKSEKSWHGS 656 ++ N ++ + S V + + + E LA +L NR + I +W + Sbjct: 594 VVAYLERLNIQESMTLFLLDSDVHSAKQFEKREFVEHLAEQLKNRASQIGSIHSCAWRPA 653 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----- 711 D+ + + + + ++ I +L G Sbjct: 654 CFEFDVTLAGQSHMMATV---GPNIPLINEYRHALDLYKTINPYLNGSFTLSKTGGTGQE 710 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++ L++ + KG +QRYKGLGEMN QLW+TT+NP R+L++VKI D Sbjct: 711 SQLTAENWHRLIELVREETFKGSHLQRYKGLGEMNPEQLWDTTMNPTNRTLIQVKIDDVE 770 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 DD+F+ LMGD+VEPRREFIQ ++L A LDI Sbjct: 771 VTDDMFTTLMGDKVEPRREFIQNHALEVADLDI 803 >gi|148926822|ref|ZP_01810501.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486] gi|145844547|gb|EDK21654.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486] Length = 769 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +++S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|307746967|gb|ADN90237.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni M1] gi|315931303|gb|EFV10272.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 327] Length = 769 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|88597733|ref|ZP_01100966.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218561696|ref|YP_002343475.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9297098|sp|O87667|GYRB_CAMJE RecName: Full=DNA gyrase subunit B gi|88190037|gb|EAQ94013.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359402|emb|CAL34184.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925306|gb|ADC27658.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni IA3902] gi|315928458|gb|EFV07770.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930330|gb|EFV09418.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 305] Length = 769 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +++S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRSLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|86153959|ref|ZP_01072161.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842497|gb|EAQ59710.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 769 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV +D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|86150547|ref|ZP_01068771.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152360|ref|ZP_01070570.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|121612557|ref|YP_999722.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|167004699|ref|ZP_02270457.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176] gi|315123619|ref|YP_004065623.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85838999|gb|EAQ56264.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840657|gb|EAQ57909.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|87249029|gb|EAQ71991.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|315017341|gb|ADT65434.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 769 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV +D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|205355744|ref|ZP_03222514.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421] gi|205346521|gb|EDZ33154.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421] Length = 769 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVVGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +++S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|166154400|ref|YP_001654518.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu] gi|166155275|ref|YP_001653530.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930388|emb|CAP03881.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu] gi|165931263|emb|CAP06835.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 804 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 359/815 (44%), Positives = 507/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI IQGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 804 >gi|57236917|ref|YP_178032.1| DNA gyrase subunit B [Campylobacter jejuni RM1221] gi|57165721|gb|AAW34500.1| DNA gyrase, B subunit [Campylobacter jejuni RM1221] Length = 769 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 351/803 (43%), Positives = 499/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV +D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ KVL A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|48094245|gb|AAT40430.1| DNA gyrase subunit B [Campylobacter jejuni] gi|315057444|gb|ADT71773.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni S3] Length = 769 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 351/803 (43%), Positives = 499/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LNS + I+ D R + + ++GGI FV +D +KK + Sbjct: 180 FDYEILAKRFRELAYLNSKITINFKDNRVGK--HESFHFEGGISQFV--IDLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEANYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|283956181|ref|ZP_06373666.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792335|gb|EFC31119.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 769 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 350/803 (43%), Positives = 498/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDMNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVTNGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQAHAKDVKHLDV 769 >gi|15618195|ref|NP_224480.1| DNA gyrase subunit B [Chlamydophila pneumoniae CWL029] gi|15835810|ref|NP_300334.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138] gi|16752763|ref|NP_445031.1| DNA gyrase subunit B [Chlamydophila pneumoniae AR39] gi|33241617|ref|NP_876558.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183] gi|6647530|sp|Q9Z8R3|GYRB_CHLPN RecName: Full=DNA gyrase subunit B gi|4376548|gb|AAD18424.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029] gi|7189402|gb|AAF38314.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39] gi|8978649|dbj|BAA98485.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138] gi|28415637|dbj|BAC57414.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae] gi|33236126|gb|AAP98215.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183] Length = 805 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 360/817 (44%), Positives = 509/817 (62%), Gaps = 30/817 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + +YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ GY Sbjct: 2 DPKEKNYDASAITVLEGLQAVRERPGMYIGDT-GITGLHHLVYEVVDNSIDEAMAGYCSR 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 I V + DG + DNGRGIP ++H+ E +SA EV++T LHAGGKF++ SYKVS Sbjct: 61 IDVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS L + ++ Y+M F GI PL S + GTE+ F P Sbjct: 121 GGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYV-SVSDRQGTEIVFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN + I D R ++T FY+GGI++FVSYL+ Sbjct: 180 DPKIFSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L PI I G+R I + A++WN GY E V + NNIP + GGTHL+G Sbjct: 240 QNKESLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y++ +K +K ++ G+D REG T+V+S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVS 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + V + L+ + EE+P A++IV KV A+ R+AA++AR+LT RK LD A LPGK Sbjct: 360 SVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IGT+I ALG GIG D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+ +E LF ++ + L +FI+ Sbjct: 540 VYIAQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRGEALESFINV 599 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L ++ I F E + + + + L EK E Sbjct: 600 ILDVESFINTLEKKAIP-FSEFLEMYKEGIGYPLYYLAPATGMQGGRYLYSDEEKEEALA 658 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + I ++ V I + +Y S+ + +I N D Sbjct: 659 QEETHKFKI--------IELYKVAVFVDIQNQLKEYGLDISSYL--IPQKNEIVIGNEDS 708 Query: 714 ----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +++ + ++GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+ V + D Sbjct: 709 PSCNYSCYTLEEVINYLKNLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKD 768 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 A +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 769 AVEADHIFTMLMGEEVPPRREFIESHALSIRINNLDI 805 >gi|283953662|ref|ZP_06371193.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794703|gb|EFC33441.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414] Length = 769 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 345/798 (43%), Positives = 498/798 (62%), Gaps = 31/798 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D + V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTVDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E I V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDIHPTENIPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R G IY F G + + V G + TGT + F P IF + + Sbjct: 121 VVNALSKKLVATVERNGKIYRQEFSEGKIISEFGVIGKSK-KTGTTIEFWPDDQIFEMTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 FNY+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FNYEILVKRFRELAYLNPKITINFKDNRIGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + LS Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G G+G Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGVG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D F+++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG++Y+ +PPLY + Sbjct: 476 ED-FNLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGYIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRVILKDLEK 588 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + + +I + + E ++ K F+ + + IN ++I Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEKLFNVIKK------FLETQGHNILNYYINENEIRAFV 642 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + E+ V+ + +I++ L +L+ + Sbjct: 643 QTQNGLEELVINEELFTHPLYEEASYIFGKIKDRGLEFN-----------KDILEILEDV 691 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ MGDEVE Sbjct: 692 ETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFMGDEVE 751 Query: 787 PRREFIQENSLPSA-LDI 803 PRR++IQ ++ LD+ Sbjct: 752 PRRDYIQAHAKDVKHLDV 769 >gi|94987227|ref|YP_595160.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731476|emb|CAJ54839.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Lawsonia intracellularis PHE/MN1-00] Length = 799 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 348/809 (43%), Positives = 496/809 (61%), Gaps = 16/809 (1%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ N + Y ADSI IL+GL AV+ RP+MYIG TD GLHH++YEV+DN+IDE++ Sbjct: 1 MASNSEIIPKDYTADSITILEGLQAVRMRPAMYIGSTD-TRGLHHLVYEVIDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ I V L++D S TV DNGRGIP D+H +EG+ A +V+MT+LHAGGKF+ +YKVSG Sbjct: 60 GFCTRIDVVLHLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+S VNALS L++ I R G ++ + G+ L G + ++ GT + F Sbjct: 120 GLHGVGLSCVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGES-DNHGTTIRFKAD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF +++Y+TL+ R EL++LN ++I D+R+ E +GGI FV ++ Sbjct: 179 EEIFETTEYSYETLKRRFEELAYLNKGLEIHCTDERTSETH--LFKAEGGIHQFVKDINT 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + L I + + + ID A+++N GY EN L F NNI K+GGTHL+G ++ALTR Sbjct: 237 GESILHS-IISRESIVEGVMIDFALQYNAGYKENTLTFANNIRTKEGGTHLAGFKTALTR 295 Query: 299 QITSYVEKSFGSKK--DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 I Y++ K +++ GDD REG T+VLS+K+P+P+F QTK KL +SE+ +V Sbjct: 296 AINGYIKGQPDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V L + +E+P + + I+ K +DA+ R+AARRA++L RRKG L +LPGKLAD Sbjct: 356 GGAVYTSLDTYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLAD 415 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ++P +SELF+VEGDSAGGSAKQGR+ QAILPLRGKILN+ER RFDKML+++EI Sbjct: 416 CQSKNPAESELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKA 475 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+G GIG++ D KLRY+KI+IMTDADVDGAHIRTLLLTFFFR LI G LYI Sbjct: 476 LITAMGAGIGEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYI 535 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + KS +++KD+ SL D+L+ +S E+E+ +S ++ +D+ + Sbjct: 536 AQPPLYRVHNSKSEKFIKDDPSLNDFLL-HRVSSELEIQTESGKLLKGSDIITTMKQIES 594 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 I + KD + +I+ + + +S ++ LN + + + S Sbjct: 595 ISQRTKDAELAGISENLFMLLIT---SPKKLTSDVLSSLEEIQLYLN-TSGYNITVENES 650 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK 715 + D L + + S + + + + +G Sbjct: 651 HEDGDRLFTIFENKNGHKTRIPADFFASKIYSSTWDVMDSLLTMCGGINFIVFHSGTSHT 710 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I L RKGI++QRYKGLGEMN QLW TT++P R+LL+V I DA +A++ Sbjct: 711 INDLFKLYQFTLDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTINDAEEANE 770 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 F +LMG+ VEPRREFI+ N+L LDI Sbjct: 771 TFEQLMGERVEPRREFIERNALNVRDLDI 799 >gi|288818582|ref|YP_003432930.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6] gi|288787982|dbj|BAI69729.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6] gi|308752173|gb|ADO45656.1| DNA gyrase, B subunit [Hydrogenobacter thermophilus TK-6] Length = 786 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 332/800 (41%), Positives = 491/800 (61%), Gaps = 15/800 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y A+ I+ + GL+ V+ RPSMYIGD GE GLHH+++E+LDNA+DE + GYA I Sbjct: 1 MEMERYQAEDIKAVTGLEHVRLRPSMYIGDV-GERGLHHLLWEILDNAVDEHVAGYAKNI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +V ++ DGS +V D+GRGIP DLH + GI A +++ T L AGGKF++K Y+ SGGLHGVG Sbjct: 60 SVVIHEDGSVSVEDDGRGIPVDLHPDTGIPAVQMVFTMLGAGGKFDKKVYRYSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS WL + + R+G I+ + G PL V GS GT+VTF P +DIF Sbjct: 120 ASVVNALSEWLAVEVYRDGKIHRQEYSRGEPLYPLKVIGST-IKRGTKVTFKPDADIFET 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 D ++ R+REL++LN L+D+R + GIE V +L K+PL Sbjct: 179 TKIKLDLVERRVRELAYLNPDCTFRLLDERIGKEFVYKF--DKGIEELVKFLSTGKEPLF 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 IRI+ R+ + +D+A + Y E V F NNI +GGTH++G RS LT+ + + Sbjct: 237 DQVIRIREEREGVDVDVAFLYTKDYRELVESFVNNIKTVEGGTHITGFRSGLTKAVMRSL 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + K+ K ++ G+D REG +V+S K+P+P+F QTK KL + V+S+VES V + L Sbjct: 297 QIIKLQKELKEAITGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQNVKSIVESVVYEHL 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+ + IV+K ++A++ R+AA++A++L RRK L+ +LPGKLADCSE+DP+K Sbjct: 357 SEYFEENKEIYRKIVEKAVEAALAREAAKKAKELVRRKSPLEDTTLPGKLADCSEKDPQK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 ELF+VEG+SAGGSAKQGR R QAILPLRGKILNVE+AR DK+ S++EI +++++G G Sbjct: 417 CELFIVEGESAGGSAKQGRDRRTQAILPLRGKILNVEKARLDKVFSNEEIKAIVSSIGCG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG + D++KLRYHK+I+MTDADVDG+HIRTLLLTFF+R MP LI G LYI +PPLY + Sbjct: 477 IGDEL-DLSKLRYHKVILMTDADVDGSHIRTLLLTFFYRYMPKLIEAGHLYIAQPPLYRL 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK++ Y+KD+ LE+ L+ ++ + +L + + + ++ K Sbjct: 536 KKGKTVLYLKDDRELENTLMEYIKNQGTLIDAQ-GRKYQDEELMKLLKNLREFEENYKYL 594 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + + + + E V L R N E + + D+++ Sbjct: 595 IRRKGEDVLSALQHVKLSEEDLRDEKAVEKKLSLL-RENLPEYTIETKYDHINSAYDLIL 653 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 G + +++ + S YK +FS+ +++ + +L Sbjct: 654 TDTKTG--KCVIIDVDFLSSLA--YKSVFSDL---ELQLPVTIGLEKKSRTLHHVHQILS 706 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + ++ +QRYKGLGEMN QLWETT+NP TR LL++ I DA++AD +F+ LMG++ Sbjct: 707 SFMELAKESFEVQRYKGLGEMNPEQLWETTMNPATRRLLKISIEDAAEADRIFTILMGED 766 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRREFI+ + LD+ Sbjct: 767 VEPRREFIETYAREVRNLDV 786 >gi|197120425|ref|YP_002132376.1| DNA gyrase subunit beta [Anaeromyxobacter sp. K] gi|196170274|gb|ACG71247.1| DNA gyrase, B subunit [Anaeromyxobacter sp. K] Length = 795 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 355/802 (44%), Positives = 493/802 (61%), Gaps = 24/802 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 L+GL+AV+KRP MYIGD G GLHH++YEV+DN++DE++ G A+ I V ++ D S TV Sbjct: 2 LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVL 60 Query: 78 DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 DNG GIP H +G+ +V++T+LHAGGKF +YKVSGGLHGVGV+ VNALS WLK Sbjct: 61 DNGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + R+G ++ + G + G GT +TF P + IF V +++++TL RL Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252 REL+FLN+ ++I++ D+R + E +K GI FV++L++ ++ L Q P ++ Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSREVLFQPPIALRQEVET 237 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311 R +++A++WNDGY E V F NNI +GGTHL G ++ALTR I +Y +K+ Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 GDD REG +V+S+++P F QTK KL ++E +S+VE+ +N+ LSA+LEE+ Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLEEN 357 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P AK I KV +A+ R AAR+AR+ RRKG LD ASLPGKLADC RDPK+SEL+LVE Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAKQGR R QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I G +YI +PPL+ + +GK Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 Y+KDE +L++YL+ + + VI DL DA+ L+ D Sbjct: 538 YLKDEAALDEYLLALGTDRTRLV--AGETVIEGRDLARLARDAIAYRALLARVDRRRDSR 595 Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662 ++ A+ G + + + A KL L K E+ + Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFDKAQKLHPELQVRIAKIER--DEEHGCDAL 653 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + + G L+ + I E L ++ Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVRDVFEA 713 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 ++ + +G ++QRYKGLGEMN QLWETT++P R++L+V++ D +AD++FS LMG Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFI++++L LDI Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795 >gi|242310229|ref|ZP_04809384.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489] gi|239523526|gb|EEQ63392.1| DNA gyrase subunit B [Helicobacter pullorum MIT 98-5489] Length = 772 Score = 795 bits (2054), Expect = 0.0, Method: Composition-based stats. Identities = 359/805 (44%), Positives = 507/805 (62%), Gaps = 39/805 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N Y SI++LKGL+AV+KRP MYIGDT+ +GLHH+IYEV+DN+IDE++ GY + I Sbjct: 1 MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTN-INGLHHLIYEVVDNSIDEAMAGYCNEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++TL +GS + DNGRGIP D+H E I AA V++T LHAGGKF+Q SYKVSGGLHGVG Sbjct: 60 SITLTKEGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L++ I + G IY +F GI + L + G + GT + F+P IF V Sbjct: 120 VSVVNALSKSLQMTIYKNGQIYRQNFAQGIPQDELTIIGECK-ENGTTIEFIPDGTIFEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F + L R +EL++LN + I D+R + E T ++GG+ FVS D +KKPL+ Sbjct: 179 TEFQREILAKRFKELAYLNKQITIHFKDER--DNFEETYHFEGGLNQFVS--DLNKKPLI 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I +G +++ + +A+ +NDG+ E VL F NNI DGGTH SG R LTR IT+Y+ Sbjct: 235 STIISFEGLENDVEMQIALAYNDGFDEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ + G+D REG +++S+K+ DP+F QTK KL SS VR +V+ + L Sbjct: 295 EANANAREKDSKITGEDIREGLIAIVSVKVVDPQFEGQTKGKLGSSFVRPIVQKLTFEKL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P EAK I++K L A+ R+AA++AR+LTR+K + +LPGKLADC +DP Sbjct: 355 TKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSI 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S+EI LITALG G Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FDI+K+RY+KIIIMTDADVDG+HI+TLL+TFFFR + +I +G+LYI +PPLY Sbjct: 475 IGED-FDISKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRF 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE++L +YLI + I DL F + + Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFEFQ------GIGTKDLIEFFKIVAHYRSTLNEL 587 Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + FIE + G+ N E ++I + S N LN + ++ + ++ Sbjct: 588 EKRFQLIEIVRHFIENPDLIGMKNQELYEQIKQKIQSLNFNILNEMLDEQRIHLYVQTDS 647 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +K ++ + +++E N + ++ P Sbjct: 648 GLVDIK-----------IDDELFTHPLFEEAHFVYGKLKE---------RNLEFLQGNDP 687 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L+ I +KG +QRYKGLGEMN QLWETT+ P+ R L+RV+I D +A D+FS Sbjct: 688 VEMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDVEEASDVFSL 747 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRRE+IQ ++ LD+ Sbjct: 748 FMGDEVEPRREYIQAHAKDVKHLDV 772 >gi|220915127|ref|YP_002490431.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219952981|gb|ACL63365.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 795 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 356/802 (44%), Positives = 494/802 (61%), Gaps = 24/802 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 L+GL+AV+KRP MYIGD G GLHH++YEV+DN++DE++ G A+ I V ++ D S TV Sbjct: 2 LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSITVL 60 Query: 78 DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 DNG GIP H +G+ +V++T+LHAGGKF +YKVSGGLHGVGV+ VNALS WLK Sbjct: 61 DNGSGIPIGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + R+G ++ + G + G GT +TF P + IF V +++++TL RL Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252 REL+FLN+ ++I++ D+R + E +K GI FV++L++ ++ L Q P ++ Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSREVLFQPPIALRQEVET 237 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311 R +++A++WNDGY E V F NNI +GGTHL G ++ALTR I +Y +K+ Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 GDD REG +V+S+++P F QTK KL ++E +S+VE+ +N+ LSA+LEE+ Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLEEN 357 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P AK I KV +A+ R AAR+AR+ RRKG LD ASLPGKLADC RDPK+SEL+LVE Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAKQGR R QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I G +YI +PPL+ + +GK Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 Y+KDE +L++YL+ + D+ VI DL DA+ L+ D Sbjct: 538 YLKDEAALDEYLLALGTDRTRLVAGDT--VIEGRDLARLARDAIAYRALLARVDRRRDSR 595 Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662 ++ A+ G + + + A KL L K E+ + Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFDKAQKLHPELQVRIAKIER--DEEHGCDAL 653 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + + G L+ + I E L ++ Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVLDVFEA 713 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 ++ + +G ++QRYKGLGEMN QLWETT++P R++L+V++ D +AD++FS LMG Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFI++++L LDI Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795 >gi|86156434|ref|YP_463219.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C] gi|85772945|gb|ABC79782.1| DNA gyrase subunit B [Anaeromyxobacter dehalogenans 2CP-C] Length = 795 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 353/802 (44%), Positives = 492/802 (61%), Gaps = 24/802 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 L+GL+AV+KRP MYIGD G GLHH++YEV+DN++DE++ G A+ I V ++ D S TV Sbjct: 2 LEGLEAVRKRPHMYIGDV-GARGLHHLVYEVVDNSVDEAMAGRANEINVAIHADNSVTVL 60 Query: 78 DNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 DNG GIP H +G+ +V++T+LHAGGKF +YKVSGGLHGVGV+ VNALS WLK Sbjct: 61 DNGSGIPVGPHPTVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + R+G ++ + G + G GT +TF P + IF V +++++TL RL Sbjct: 121 AEVYRDGKVWAQRYERGTPAGKVTAIGET-QRRGTRITFKPDATIFEVTEYSFETLSGRL 179 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP----IRIQG 252 REL+FLN+ ++I++ D+R + E +K GI FV++L++ + L Q P ++ Sbjct: 180 RELAFLNAGLKITIEDERHGKKHE--FLFKDGIREFVAFLNKSRDVLFQPPIALRQEVET 237 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311 R +++A++WNDGY E V F NNI +GGTHL G ++ALTR I +Y +K+ Sbjct: 238 ERGAALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 GDD REG +V+S+++P F QTK KL ++E +S+VE+ +N+ LSA+L+E+ Sbjct: 298 LKDELPSGDDMREGLAAVISVRLPGASFEGQTKTKLSNTEAKSMVETMLNERLSAFLDEN 357 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P AK I KV +A+ R AAR+AR+ RRKG LD ASLPGKLADC RDPK+SEL+LVE Sbjct: 358 PNVAKRICGKVAEAARARIAARKARETVRRKGALDSASLPGKLADCQSRDPKESELYLVE 417 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAKQGR R QAILPLRGKILNVE+ARFDKML S EI T+ITALGTGIG + FD Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLGSAEIATIITALGTGIGPEEFD 477 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 + K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMPS+I G +YI +PPL+ + +GK Sbjct: 478 VEKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPSVIERGLVYIAQPPLFRVAKGKKES 537 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 Y+KDE +L++YL+ + + V+ DL DA+ L+ D Sbjct: 538 YLKDEAALDEYLLALGTDRTRLV--AGETVVEGRDLARLARDAIAYRALLARVDRRRDSR 595 Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662 ++ A+ G + + + A KL L K E+ + Sbjct: 596 IVDAAIQLGDLDLDLLKHHEQVKEQVQKIFEKAQKLHPELQVRIAKIER--DEEHGCDAL 653 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + + G L+ + I E L ++ Sbjct: 654 VYQTSMAGAPRDTRLDHDYLSGAEWGELAALHAAIAELGPGPFRLETPEGAEEVLDVFEA 713 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 ++ + +G ++QRYKGLGEMN QLWETT++P R++L+V++ D +AD++FS LMG Sbjct: 714 VEAVKKAAGQGQTIQRYKGLGEMNPEQLWETTMDPARRTMLQVRVDDTVEADEVFSILMG 773 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFI++++L LDI Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795 >gi|301335659|ref|ZP_07223903.1| DNA gyrase subunit B [Chlamydia trachomatis L2tet1] Length = 804 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 358/815 (43%), Positives = 507/815 (62%), Gaps = 27/815 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q YDA +I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ Sbjct: 2 DAQEKKYDASAITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVS 117 + V + DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVS Sbjct: 61 VVVRILEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVS 120 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS ++ ++G Y M F G L V G + GTEV F P Sbjct: 121 GGLHGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS F+ L RLREL+FLN I D R ++ FY+GGI++FVSYL+ Sbjct: 180 DPAIFSTCVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLN 239 Query: 238 RHKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++K+ L +PI IQGSR +I + A++WN GY E + + NNIP + GGTHL+G Sbjct: 240 QNKEILFPNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFS 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V Sbjct: 300 TALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVG 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 SV + + L+ + EE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGK Sbjct: 360 SVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC E+DP+K E+++VEG+SAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QE Sbjct: 420 LIDCLEKDPEKCEMYIVEGNSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 IG++I ALG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N Sbjct: 480 IGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENEC 539 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ Sbjct: 540 VYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNL 599 Query: 594 ALKIDKLIKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 L+++ I F++ E S L + E+ E Sbjct: 600 ILEVESFIVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEA 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + ++ +++ V E+ + Y + I + Sbjct: 655 AIAANEESASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KI 709 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA Sbjct: 710 SPYVCYTLKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 769 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS---ALDI 803 +AD +F+ LMG+EV PRREFI+ ++L LDI Sbjct: 770 EADHIFTMLMGEEVPPRREFIKSHALSIRMNNLDI 804 >gi|281356695|ref|ZP_06243186.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548] gi|281316822|gb|EFB00845.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548] Length = 824 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 356/831 (42%), Positives = 504/831 (60%), Gaps = 35/831 (4%) Query: 1 MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+N S Y A I +L+GL+AV+ RPSMYIGDT G+ GLHH++YEV+DN+IDE Sbjct: 1 MSENSVDITGSASEYSASKITVLEGLEAVRVRPSMYIGDT-GQRGLHHLVYEVVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L GYA I VT++ D S +V D+GRGIP D+H+ E A EV++T LHAGGKF+ SYK Sbjct: 60 ALAGYASHIEVTIHSDNSISVEDDGRGIPVDMHEGEHKPAVEVVLTILHAGGKFDHNSYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVS VNALS WL + R Y + F G+ +PL G GT V+F Sbjct: 120 VSGGLHGVGVSCVNALSDWLVAEVYRNSKAYTIRFERGVTVDPLRELGPTT-KRGTRVSF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE----ITMFYKGGIEA 231 P IF + +D L RLREL+FLNS ++I+L D+R E + T Y+GGI Sbjct: 179 KPDGTIFPDTVYVWDILAKRLRELAFLNSGIRITLTDERLEEGQTAGRSETFHYEGGIRE 238 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVS L+ +K + I R+ I +++AM++NDG EN+ + NNI +GG+HL+G Sbjct: 239 FVSMLNVNKTVINPDVIYFHRERNGIDVEVAMQYNDGTAENIYSYANNINTIEGGSHLTG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ++ALTR I +Y + K+ + G D REG ++V+S+K+PDP+F QTK KL +SE Sbjct: 299 FQTALTRTINNY---TKTMMKNDTPLSGTDVREGLSAVISVKVPDPQFEGQTKTKLGNSE 355 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +VES +ND L A+LEEHP A+ I + AS R+AAR+AR+ RRKG L+ LP Sbjct: 356 VRGIVESVINDELGAYLEEHPKIAENIGNNAMLASRAREAARKARETVRRKGALEGIGLP 415 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP EL++VEGDSAGGSAK GR QAILP+RGK+LNVE+ RFDK+L + Sbjct: 416 GKLADCSNRDPSMCELYIVEGDSAGGSAKSGRDSGFQAILPIRGKLLNVEKVRFDKVLEN 475 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI +LI A+G GI + FD++K RYH+++IMTDADVDG+HIRTLLLTFFFRQM LI Sbjct: 476 KEIQSLIYAIGCGI-AEEFDVSKARYHRVVIMTDADVDGSHIRTLLLTFFFRQMKPLIEA 534 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI KPPL+ +T+G+ QY+ E+ L+ YL+ E++ + +++ + + Sbjct: 535 GYVYIAKPPLFKVTKGRKEQYIDTEDQLDSYLVRLG-EEDLTVKNGDGELLTPEQVSALV 593 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVIS-----GVFNCESDQEINVSLASKLANRLNFIA 646 K+ K I+ V + + A L + ++ Sbjct: 594 QLYTKVSKAAAGIRRCGIDPHEYFNAITPEGRCPVSHVTIRENDGTQTARYLYSPEEQLS 653 Query: 647 --EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF--------SFGSKYKRIFSNR 696 ++E G+ + ++ R + ++ SIF + R+ N+ Sbjct: 654 FITETELRLGGTPAADETEEQKKERTAELARHIDLVSIFEAANCQELTAELAAHRLRPNQ 713 Query: 697 IEENYLTILSLICNGDKI---KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 + ++ + GD L + G+ G+ +QRYKGLGEMNA QLWET Sbjct: 714 VFDSGTGAKYTVKAGDNQPENPANSLEELFKLVRQNGQAGLRIQRYKGLGEMNAEQLWET 773 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 T++P TR++++V++ DA +AD +F+ LMGD VEPRRE+I++++ LDI Sbjct: 774 TMDPATRTMIKVRMEDAVEADQIFNLLMGDVVEPRREYIEKHAAGVKDLDI 824 >gi|152989756|ref|YP_001355478.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2] gi|151421617|dbj|BAF69121.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2] Length = 774 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 353/806 (43%), Positives = 492/806 (61%), Gaps = 39/806 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y A+ I++LKGL+AV+KRP MYIGDT GLHH+IYEV+DNAIDE++ GY + I Sbjct: 1 MEKQQYGAEKIKVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNAIDEAMAGYCNKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLHGV 123 +TL DGS +SDNGRGIP D+H E I AA V++T LHAGGKF S YKVSGGLHGV Sbjct: 60 DITLTKDGSARISDNGRGIPVDIHPTEKIPAATVVLTVLHAGGKFGGDSAYKVSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS L + IKR+G I+ F GI LV G TGT + F P +IF Sbjct: 120 GVSVVNALSKKLIMTIKRDGKIWRQEFERGIPITDLVAIGET-RQTGTTIEFWPDEEIFE 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F +D L R +EL++LN ++ I+ D+R +GG+ FV D + K Sbjct: 179 TTEFKFDILSRRFKELAYLNPNITITFKDERVNTKEVYHF--EGGLRQFVE--DLNTKEA 234 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I D++ +D+A+ +N G+ E V F NNI +GGTH SG R+ LTR I++Y Sbjct: 235 LTKTIYFHDKVDDVEVDIALLYNSGFDEKVFSFVNNIRTPEGGTHESGFRAGLTRAISNY 294 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + ++ +K+ + G+D REG +V+S+K+P+P+F QTK KL SS VR + + + Sbjct: 295 IAQNANAKEKNVKITGEDVREGLVAVISVKVPEPQFEGQTKGKLGSSYVRPITQKLTYEK 354 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + EE+PL+AK I+ K L A+ R+AA++AR+L RRK + + +LPGKLADC +DP Sbjct: 355 LTKYFEENPLDAKAIMNKALAAARGREAAKKARELVRRKDSMSVGTLPGKLADCQSKDPS 414 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SELFLVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+L S+EI +ITALG Sbjct: 415 ISELFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEIKNIITALGC 474 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG++ FD KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ G+LY+ +PPLY Sbjct: 475 GIGEE-FDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLYPVVEKGYLYMAQPPLYR 533 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +GK Y+KD+ L +LI + + I + DL +F+ ++KD Sbjct: 534 YKKGKKEVYLKDDTELNQFLIENGVDTLLSEVN-----IGRYDLIDFLKLVAHYRMVLKD 588 Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + + IE ++ + N E Q+I L K N LN I+ Sbjct: 589 LEKRYSLIEVVRYLIENRDLAALDNSELYQKIGTFLEQKNYNILNK-----------HID 637 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + I + E+ +++ + +IE+ +++K Sbjct: 638 DEKIHLYVQTEEGLEEIIIDDELFTNPYFVEGVYIFEKIEDRVP---------EELKEKD 688 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +L+ + +KG +QRYKGLGEMN QLWETT++P+ R LLRV + +A A D+FS Sbjct: 689 LMEILEKVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPENRRLLRVTVENAEHASDVFS 748 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPR+++I+E++ LD+ Sbjct: 749 LFMGDEVEPRKKYIEEHAKDVKHLDV 774 >gi|153951349|ref|YP_001397276.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei 269.97] gi|152938795|gb|ABS43536.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 769 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 349/803 (43%), Positives = 497/803 (61%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ G+ D I V Sbjct: 2 QENYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGHCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E + V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++R IY F G + + V G + TGT + F P IF V + Sbjct: 121 VVNALSKKLVATVERNKEIYRQEFSEGKVISEFGVIGKSK-KTGTTIEFWPDDQIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R + + ++GGI FV+ D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVGK--HESFHFEGGISQFVT--DLNKKEALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +++++++A+ +ND Y EN+L F NNI DGGTH +G R LTR I++Y+E Sbjct: 236 AIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTRVISNYIEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL S+ VR +V + L+ Sbjct: 296 NASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSKASFEYLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPVEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYLYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K Y+KDE++L +YLI + I NDL++++ ++KD Sbjct: 535 AKKQIYLKDEKALSEYLIETGIEGLNY------EGIGMNDLKDYLKIVAAYRAILKDLEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE + + N E I L ++ N LN ++E Sbjct: 589 RFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQGHNILNHYINENEIR--------- 639 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 + G++E V+ + ++I++ L Sbjct: 640 -AFVQTQNGLEE-LVINEELFTHPLYEEASYIFDKIKDRGLEFD-----------KDILE 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +L+ + + +KG ++QRYKGLGEMN QLWETT++P R LL++ I DA A+D F+ M Sbjct: 687 VLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSANDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR++IQ ++ LD+ Sbjct: 747 GDEVEPRRDYIQVHAKDVKHLDV 769 >gi|187250428|ref|YP_001874910.1| DNA gyrase subunit B [Elusimicrobium minutum Pei191] gi|186970588|gb|ACC97573.1| DNA gyrase, B subunit [Elusimicrobium minutum Pei191] Length = 825 Score = 793 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 360/832 (43%), Positives = 514/832 (61%), Gaps = 36/832 (4%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ ++ +YD+ IQ+L+GL+AV+KRP+MYIG T G GLHH++YEV+DN++DE L Sbjct: 1 MTEEVKEKEQKNYDSSKIQVLEGLEAVRKRPAMYIGST-GLPGLHHLVYEVVDNSVDEIL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLH------KEEGISAAEVIMTRLHAGGKFNQ 111 G A I+VT+ D +C+V+D+GRGIP D K +G SA EV+MT LHAGGKF+ Sbjct: 60 AGGATKISVTIKDDMTCSVADDGRGIPVDPMVNAKDPKLKGKSALEVVMTVLHAGGKFDS 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 +YKVSGGLHGVGVS VNALS +L++ + ++G Y + G + + G+A + GT Sbjct: 120 GAYKVSGGLHGVGVSCVNALSEYLEVVVNKDGKQYFQRYHRGKPEEKVKEIGAAK-EKGT 178 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 VTF ++IF F+YDT+ +RLREL+FLN+ V+I L D+R EP+ T FY+GGI Sbjct: 179 TVTFKADTEIFGELSFSYDTIANRLRELAFLNAGVKIILTDERGDEPKTHTFFYEGGISQ 238 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV Y++ +K L PI + +N I A+++ND Y EN+ F NNI +GGTHLSG Sbjct: 239 FVKYINSNKTTLHAEPIYLTKEINNNYISFAIQYNDSYSENIYSFVNNINTIEGGTHLSG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RS+LTR I Y++ + K + +V GDD REG T+VLS+K+P P+F QTK KL +SE Sbjct: 299 FRSSLTRVINEYIKDNGLLKNKEVNVTGDDMREGLTAVLSVKIPHPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 + +V S V D L+ + EE+P AK + +K + A++ R+AAR+ARDLTRRK L+ LP Sbjct: 359 IEGIVRSMVGDALTTFFEENPKTAKAVCEKCIGAAVAREAARKARDLTRRKSALEGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC ER ++ ELF+VEG+SAGGSAKQGR R QAILPLRGK+LNVE+A+ K+LS+ Sbjct: 419 GKLADCQERVAERCELFIVEGNSAGGSAKQGRDRVFQAILPLRGKVLNVEKAQLVKILSN 478 Query: 472 QEIGTLITAL--GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +EI TL TAL G G G+ FDI++LRYHKI++M DADVDG HI TLLLTFF+RQ+ LI Sbjct: 479 EEIRTLFTALGTGVGEGEGGFDISRLRYHKIVLMADADVDGQHITTLLLTFFYRQLRPLI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY + +GK+ QY++ EE L ++L + ++ + D K ++ +L++ Sbjct: 539 EAGHVYIAQPPLYKVKKGKNEQYLQTEEQLVNWLSKEGINSTSVVKAD-KTALTAVELKD 597 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + ++ L+ I N + L S E Sbjct: 598 LLKILKDVEDLLMKIEVKG----ITLNEFLSFVNAGQIPLYRIPLQSGGFRYFYTEKEYG 653 Query: 650 EKSWHGSINNSDILVKR---IARGVQEQFVLEGSSIFSFGS-----KYKRIFSNRI---- 697 + + + ++L+ I+ E E S+F FG + F + Sbjct: 654 DYAAQYILERKEVLMAEGADISMLSDEDLAPEHQSLFEFGKLLAADTKLKAFGYSLANYQ 713 Query: 698 -----EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752 +E + ++ + + L T+ G G ++QRYKGLGEMN QLWE Sbjct: 714 DAVSEDEKKNPLFTVNTGKSDVFVYSLHELFKTVKDAGSSGSTIQRYKGLGEMNPEQLWE 773 Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 TT++P RSL++V+I DA+ A+ +F+ LMGD+VEPRR FI+ ++L LDI Sbjct: 774 TTMDPAKRSLIKVEIQDAADAEQIFTTLMGDKVEPRRAFIESHALEVKNLDI 825 >gi|291276246|ref|YP_003516018.1| DNA gyrase subunit B [Helicobacter mustelae 12198] gi|290963440|emb|CBG39269.1| DNA gyrase subunit B [Helicobacter mustelae 12198] Length = 772 Score = 792 bits (2046), Expect = 0.0, Method: Composition-based stats. Identities = 335/800 (41%), Positives = 491/800 (61%), Gaps = 29/800 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N Y A +I++LKGL+AV+KRP MYIGDT+ +GLHHMIYEV+DN+IDE++ G+ I Sbjct: 1 MENKDYGASNIKVLKGLEAVRKRPGMYIGDTN-VNGLHHMIYEVVDNSIDEAMAGHCSQI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +TL +GS + D+GRGIP D+H E + AA V++T LHAGGKF++ +YKVSGGLHGVG Sbjct: 60 KITLTQEGSAIIEDDGRGIPVDMHPTEKLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L + IK+ G IY F GI L + G + GT + F P ++ + Sbjct: 120 VSVVNALSKRLIMTIKKNGYIYRQEFAKGIPQTDLEIIGKTK-EHGTTIEFFPDGEVMEI 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R +E+++LN +V + ++++ + + G+ FV + +KKP + Sbjct: 179 LEFDAEILIKRFKEMAYLNQNVTLFFKEEKTGREQVFHF--ENGLHQFVEDM--NKKPFI 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + + ++ I++A+ +N+GY E VL F NNI DGGTH +G R+ L+R I +Y+ Sbjct: 235 SPIISFKANEEDTEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ + G+D REG +++S K+ +P+F QTK KL SS V+ +V+ + L Sbjct: 295 EANASAREKDAKIQGEDVREGLVAIISAKIMEPQFEGQTKGKLGSSFVKPIVQKLTFEKL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P EAK I++K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP++ Sbjct: 355 AKFFEENPNEAKKIMQKALLAARGREAAKKARELTRKKDSLSVGTLPGKLADCQSKDPRE 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S EI +ITA G G Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI NG +YI +PPLY Sbjct: 475 IGEE-FDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIENGHIYIAQPPLYRF 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE++L +YLI + I +L + ++K+ Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFHFQ------GIGSQELLEILRYISHYRGILKEI 587 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 ++ + F E+ I++ A F+ +I+ I + Sbjct: 588 QKHY------SMIEVIKFLIENRDFISLPFAELYEKIEVFLQSIDCNILSKNISEQQITL 641 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 + + V++ + + + N+I E + L LL+ Sbjct: 642 YIQTKTGLVELVIDENLFSNTFFEEAYFIHNKIMER--DLSFLEGR-------DLIDLLE 692 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 I +KG +QRYKGLGEMN QLWETT+ P R+LL+V + D AD++F+ MGDE Sbjct: 693 EIEESAKKGAYIQRYKGLGEMNPEQLWETTMTPSNRTLLKVALEDEESADEIFTLFMGDE 752 Query: 785 VEPRREFIQENSLPSA-LDI 803 VEPRR +IQEN+ LDI Sbjct: 753 VEPRRAYIQENAKNVKHLDI 772 >gi|153002883|ref|YP_001377208.1| DNA gyrase subunit B [Anaeromyxobacter sp. Fw109-5] gi|152026456|gb|ABS24224.1| DNA gyrase, B subunit [Anaeromyxobacter sp. Fw109-5] Length = 795 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 361/802 (45%), Positives = 499/802 (62%), Gaps = 24/802 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 L+GL+AV+KRP MYIGD GE GLHH++YEV+DN++DE++ G A+ ITVT++ D S T+ Sbjct: 2 LEGLEAVRKRPHMYIGDV-GERGLHHLVYEVVDNSVDEAMAGRANEITVTIHADSSITIV 60 Query: 78 DNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 DNG GIP H +G+ +V++T+LHAGGKF +YKVSGGLHGVGV+ VNALS WLK Sbjct: 61 DNGSGIPIGPHPSVKGMDTLDVVLTKLHAGGKFESNAYKVSGGLHGVGVTCVNALSEWLK 120 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + REG ++ + G + G GT++TF P + IF V +F+++TL RL Sbjct: 121 AEVYREGKVWLQRYDRGTPAGKVTAVGET-QRRGTKITFKPDATIFEVTEFSFETLSGRL 179 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR----IQG 252 REL+FLN+ + I++ D+RS + E +K GI FV YL++ + L Q PI ++ Sbjct: 180 RELAFLNAGLTITIEDERSGKKHE--FLFKDGIREFVGYLNKSRDVLFQPPISLRQEVET 237 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF-GSK 311 R +++A++WNDGY E V F NNI +GGTHL G ++ALTR I +Y +K+ Sbjct: 238 ERGTALVEIALQWNDGYDEKVFAFANNIHNHEGGTHLIGFKAALTRTINAYGQKNNLFKD 297 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 GDD REG +V+SI++P F QTK KL ++E +S+VE+ +N+ L A+LEE+ Sbjct: 298 LKDELPSGDDMREGLAAVISIRLPGASFEGQTKTKLSNTEAKSMVETMLNERLGAFLEEN 357 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P AK + KV +A+ R AAR+AR+ RRKG LD ASLPGKLADC RDP++SELF+VE Sbjct: 358 PNVAKRVCAKVAEATRARIAARKARETVRRKGALDGASLPGKLADCQSRDPRESELFIVE 417 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAKQGR R QAILPLRGKILNVE+ARFDKMLSS EI T+ITALGTGIG + +D Sbjct: 418 GDSAGGSAKQGRDRRTQAILPLRGKILNVEKARFDKMLSSAEIATMITALGTGIGPEEYD 477 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 ++K+RYHKI+IMTDADVDG+HIRTLLLTFFFRQMP L+ G+LYI +PPLY + +GK Sbjct: 478 VSKIRYHKIVIMTDADVDGSHIRTLLLTFFFRQMPELVEKGYLYIAQPPLYRVQKGKKES 537 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 Y+KDE +L+D+L+ + + D V+ DL+ DA++ L+ D Sbjct: 538 YLKDEAALDDFLLQLGTEKAKLVAGDL--VVEGADLKRLAQDAIRYRGLLARVDRRRDSR 595 Query: 612 FIEQAVISGVFNCESDQEINV---------SLASKLANRLNFIAEKSEKSWHGSINNSDI 662 ++ AV G + E + A KL L K E+ + Sbjct: 596 IVDAAVQLGDLDLELLKHHEQVKEQVQKIFDKAQKLHPELEVRLAKIER--DEEHGCDAL 653 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 + + G ++ + + E L + ++ Sbjct: 654 VFQTTMSGATRTTRIDFDYLSGPEWGELAGLYGELAELGAGPHKLRTGDGEEEVDDVFGA 713 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 ++ + G ++QRYKGLGEMN QLWETT++ R+LL+V++ D +AD++FS LMG Sbjct: 714 VEVLKRAATAGQTIQRYKGLGEMNPEQLWETTMDHARRTLLQVRVDDTVEADEVFSVLMG 773 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFI++++L LDI Sbjct: 774 DAVEPRREFIEKHALDVQNLDI 795 >gi|303256368|ref|ZP_07342382.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47] gi|331001506|ref|ZP_08325124.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859] gi|302859859|gb|EFL82936.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47] gi|329568235|gb|EGG50052.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT 11859] Length = 836 Score = 791 bits (2042), Expect = 0.0, Method: Composition-based stats. Identities = 393/838 (46%), Positives = 531/838 (63%), Gaps = 42/838 (5%) Query: 1 MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M D SY D+IQ+L+GL+AV+KRP MYIGDT +GLHH+++EV+DN+IDE+L Sbjct: 4 MQDKNYSAEESYGEDAIQVLEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALA 63 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLH----KEEGISAAEVIMTRLHAGGKFNQKSY 114 GYAD I VT+N D S TV DNGRGIPTD+ E SAAE+ +T LHAGGKFNQ SY Sbjct: 64 GYADHINVTINRDESITVVDNGRGIPTDVKMSDKHEPKRSAAEIALTELHAGGKFNQNSY 123 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI-----------LDNPLVV-- 161 KVSGGLHGVGVS VNALSSWLKL ++REG + ++F G+ P+ + Sbjct: 124 KVSGGLHGVGVSCVNALSSWLKLTVRREGVEHYLNFKKGVLQDRLTEKVQTPTGPVEISP 183 Query: 162 --TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 A + GTEV FLP ++IF DF+Y+ L RLRELSFLN+ V+I L D R + Sbjct: 184 MHVSGATDRRGTEVQFLPDAEIFGTVDFHYEVLSSRLRELSFLNNGVKIHLADLRKGKD- 242 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVL 274 + GG+ FV +++R K + + + +NI++++AM+W DGY EN L Sbjct: 243 -EVFQFAGGVSGFVDFINRDKTKIHDNCFYTNKTVTVNPEENINVEVAMQWTDGYTENFL 301 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 +TNNIPQKDGGTH++GLRSA+T I Y+E+S +KK+K + G+D REG T VLS+KM Sbjct: 302 AYTNNIPQKDGGTHVNGLRSAMTAVIKRYIEESEFAKKEKIDLTGEDIREGLTCVLSLKM 361 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 P+P+FSSQTK+KLVSSE R VE V L ++L+E+P +A+II +K++DA+ R+AAR+ Sbjct: 362 PEPKFSSQTKDKLVSSEARPAVEQVVRTALESYLQENPKDARIICEKIMDAARAREAARK 421 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 AR+ TRRKG+L A LPGKLADCSERD E+FLVEGDSAGGSAKQGR R QAILPLR Sbjct: 422 ARETTRRKGLLGSAGLPGKLADCSERDRSLCEVFLVEGDSAGGSAKQGRDRSFQAILPLR 481 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GK+LNVE+AR +K++SS++I TLI ALGT IG D FD++KLRY ++IIMTDADVDGAHIR Sbjct: 482 GKVLNVEKARIEKLISSEQIATLIAALGTSIG-DEFDLDKLRYDRVIIMTDADVDGAHIR 540 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574 TLLLT F+RQMP LI G +YI +PPLY + G+ +Y+KD++ L +L++Q ++ Sbjct: 541 TLLLTLFYRQMPKLIEGGHVYIAQPPLYKVEYGQKTKYIKDDKELYTFLVDQGITGTNLY 600 Query: 575 FC----DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630 ++K IS + L+ + +I F D + + + SD+ Sbjct: 601 VSKEAFENKQGISGDKLKEYFLAYSDAQNIISKFSRFVDASVLTAIAAGATIDLSSDKAA 660 Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690 S+ +A + + N I+VKR G + + + I + Sbjct: 661 ADSIEKLVAKITDPAISL---GYAVEENIPTIIVKRTHFGNIIESRITPAFIETPDYLTL 717 Query: 691 RIFSNRIEENYLTILSLIC----NGDKIKITGPCSLLDTIFSIGRKGI-SMQRYKGLGEM 745 S + L+ I+ + I IG+ G+ MQRYKGLGEM Sbjct: 718 TAASVTFKNLLHEGACLVRTTNNKETIQPISNFSEAISFILKIGKAGVKKMQRYKGLGEM 777 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 A +L ETT++P RSLL+V+I DA AD +F++LMGDEVEPRR FI++N+L + +D Sbjct: 778 KAEELEETTMDPTKRSLLKVRIEDAIAADQVFTKLMGDEVEPRRRFIEDNALLAGNID 835 >gi|182412481|ref|YP_001817547.1| DNA gyrase, B subunit [Opitutus terrae PB90-1] gi|177839695|gb|ACB73947.1| DNA gyrase, B subunit [Opitutus terrae PB90-1] Length = 861 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 350/849 (41%), Positives = 494/849 (58%), Gaps = 58/849 (6%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +YDA IQ L+GL+ V+KRP MYIGDT+ E GLHH ++EV+DN++DE+L G+A +I VT Sbjct: 18 EAYDASKIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEVVDNSVDEALAGFASLIVVT 76 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +++DGSC++ D+GRGIP D+H I A E+++T LHAGGKF + +Y+VSGGLHGVG Sbjct: 77 IHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAKC 136 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186 VNA+S W + ++R G +Y+M F GI + V G TGT++TF P +IF Sbjct: 137 VNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTK-KTGTKITFKPDPEIFKTTRE 195 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L RLREL+FLN V I L D+RS + +++ GI FV YL+++K + Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKG--DRFYFRDGITEFVRYLNQNKNVVHDK 253 Query: 247 PIRIQGSR--------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 PI S NI +D++M++ND Y++ V + N+I +GGTHLSG R+ALTR Sbjct: 254 PITFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVFAYANSIYNIEGGTHLSGFRTALTR 313 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + ++ + K+ S+ GDD REG +V+S+K+P+PRF QTK KL + E+ +V+ Sbjct: 314 VVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQR 373 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + L + E + AK I+ K + A R T RKG L LPGKLADCS Sbjct: 374 IVGEKLRFYFEANTNIAKRIIDKT-LNAARAREAARKARETVRKGALSGGGLPGKLADCS 432 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP EL++VEGDSAGGSAKQGR R QAILPLRGK++NVE+AR DK+L+++EI TLI Sbjct: 433 ERDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLI 492 Query: 479 TALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 TA GTGIG FD +K RYHK+IIMTDADVDG+HIRTLLLTF +RQM L GF+ Sbjct: 493 TAFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFV 552 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLY I R K QY+ +++ L L+ + + + V + + +++ Sbjct: 553 YIAQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLTRIADQHVFAPAQIDKIVENL 612 Query: 595 LKIDKLIKDFYP-------------NHDKTFIEQAVISGVFNCESDQEINVSLA-SKLAN 640 ++KL + N ES + + A SK Sbjct: 613 AALEKLGAGVTRYGAALSEYLDQQDHVTHALPRYIARIREGNKESHEFLRDEAARSKFVQ 672 Query: 641 RLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQE----------QFVLEGSSIFSFG 686 A+ E+ + N S + V GV E + L + Sbjct: 673 DHGLDADMFEQPDNVVPNGTGTASGLPVNGTTAGVNEPPRKPAATPKRITLHEIFESTEM 732 Query: 687 SKYKRIFSNRIEEN-----------YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735 +K + + E +T + + +I++ P ++ I + GRKG+S Sbjct: 733 AKLLKAIAATGLEINRFGATEEARYLITENAGQKSESRIELHSPLEIVTEIRANGRKGLS 792 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QL+ETT++P+ R LL+V I DA++AD LF+ LMGDEV PRR+FI++N Sbjct: 793 IQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDAAKADALFTLLMGDEVPPRRQFIEDN 852 Query: 796 SLPSA-LDI 803 +L LD+ Sbjct: 853 ALNVQYLDV 861 >gi|319957711|ref|YP_004168974.1| DNA gyrase subunit b [Nitratifractor salsuginis DSM 16511] gi|319420115|gb|ADV47225.1| DNA gyrase subunit B [Nitratifractor salsuginis DSM 16511] Length = 771 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 352/798 (44%), Positives = 484/798 (60%), Gaps = 30/798 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A +I++LKGL+AV+KRP MYIGDT GLHH+IYEV+DN+IDE++ GY D I VT Sbjct: 2 AEYGAGNIKVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNSIDEAMAGYCDKIKVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GS + DNGRGIP H E I AA V++T LHAGGKF++ +YKVSGGLHGVGVSV Sbjct: 61 LTGEGSAIIEDNGRGIPVAEHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALS L L + REG +YE F GI PL VTG TGT++ F P IF+ + Sbjct: 121 VNALSEKLHLTVFREGQVYEQWFEKGIPVTPLEVTGKT-RKTGTKIEFWPDHTIFTETVE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F + L R +EL++LNS + I D+R+ +GGI FV + K L+ S Sbjct: 180 FKDEILTKRFKELAYLNSRITIDFKDERNGLKESYHF--EGGIRQFVEDMHT--KELLSS 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 P +G D+I +DLA + + + V+ F NNI DGGTH +G R+ LTR I++Y+ K Sbjct: 236 PQLFEGKADDIEMDLAFMYQNADSDKVISFVNNIKTADGGTHEAGFRAGLTRAISNYISK 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +K+ + GDD +EG +V+S+++P+P+F QTK KL SS VR +V+ F + +S Sbjct: 296 NANAKERNTKISGDDTKEGLVAVVSVRVPEPQFEGQTKGKLGSSYVRPLVQKFTYERISK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P+EAK I+ VL A+ R+AA+RA+DL +RK + + +LPGKLADC +DP SE Sbjct: 356 YLEENPIEAKAIMNHVLLAAKGREAAKRAKDLVKRKDSMSVGTLPGKLADCQSKDPGISE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR +K+L S EI +ITALG GIG Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMITALGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D F+ KLRYHKIIIMTDADVDG+HI+TLL+TFFFR + +I G+LY+ +PPLY + Sbjct: 476 -DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLRPVIEKGYLYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK+ Y+KD+++L D+LI + + K DL +K+ Sbjct: 535 GKNETYLKDDKALNDFLIENGIDVL------ESESMGKQDLIELFKLVAYYQMTLKELDK 588 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + +I + + E N LA+ L I + ++ I Sbjct: 589 RFALAEVIRYMIE---HPDMVGEENQKLAAALEEY---ILSLGYNILNRNVTEEKIHYYV 642 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 E+ +++ + ++I E D+ + LLD I Sbjct: 643 QTNEGLEELIVDDQLFTNPHYNEALYIYDKIRERLT---------DEFRDKDLLELLDKI 693 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + RKG +QRYKGLGEMN QLWETT++P+ R LL++ I D +AD F MGDEVE Sbjct: 694 LASARKGAYIQRYKGLGEMNPEQLWETTMDPENRRLLQITIEDFEEADKTFMLFMGDEVE 753 Query: 787 PRREFIQENSLPSA-LDI 803 PRR +I+ ++ LD+ Sbjct: 754 PRRNYIETHAKDVKHLDV 771 >gi|297621239|ref|YP_003709376.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044] gi|297376540|gb|ADI38370.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044] Length = 822 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 352/823 (42%), Positives = 513/823 (62%), Gaps = 28/823 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y+A SI +L+GL AV++RP MY+GDT SGLH ++YEV+DN+IDE++ G+ I V Sbjct: 2 SKEYNASSITVLEGLQAVRERPGMYVGDTS-TSGLHQLVYEVVDNSIDEAMAGHCSEIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 +N DGS T+ DNGRGIP H++E +SA EV+MT LHAGGKF++++YKVSGGL Sbjct: 61 IINADGSITLEDNGRGIPIQKHEKESQKQGREVSALEVVMTTLHAGGKFDKETYKVSGGL 120 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS V ALSS + + + ++G ++EM F G + L G+ GT +TF P Sbjct: 121 HGVGVSCVCALSSKMIVNVYKDGRVWEMHFSQGKVIKSLADMGATSKK-GTRITFWPDET 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 + +V +F+YD L RLREL+FLN + I D+R + ++ Y GG+++FVSYL+ +K Sbjct: 180 VMTVTEFDYDILAKRLRELAFLNRGISIFFQDERHDDKDDVNFRYDGGLKSFVSYLNENK 239 Query: 241 KPLMQSPIRI----QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + PI +G I I++AM+WNDGY+E + + NNI GGTHL+G +AL Sbjct: 240 NAIFPEPIYFYGTREGDDGPIDIEVAMQWNDGYNETIFSYVNNISTAHGGTHLTGFSTAL 299 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + +Y++ + DK + G+D REG T+V+S K+ +P+F QTK++L +S+V SVV Sbjct: 300 TRVLNNYIKTHNLLRSDKIGISGEDMREGLTAVISAKVANPQFEGQTKQRLGNSDVGSVV 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + + L +L+EHP AK I K + A+ R+AAR+AR+LT RK LD A LPGKL D Sbjct: 360 QQITGEELGIFLDEHPSIAKTISDKAILAAKAREAARKARELTLRKSALDSARLPGKLTD 419 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ER+P+ EL++VEGDSAGGSAK GR R QAILP+RGKILNVE+AR +K+L + E+GT Sbjct: 420 CQERNPELCELYIVEGDSAGGSAKSGRDRRFQAILPIRGKILNVEKARLEKVLQNTEVGT 479 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I+ALG GIG + FD+ KLRYHKIIIMTDADVDG+HIRTLLLTFF+R MP+L+ N +YI Sbjct: 480 IISALGCGIGTEGFDLGKLRYHKIIIMTDADVDGSHIRTLLLTFFYRHMPALVENNHIYI 539 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY +TR KS QY+ E+ +++YL+ +S+ + + + K + ++ + Sbjct: 540 AQPPLYLVTRKKSKQYIHSEKEMDEYLLKLGISDIVLKKETDEQPMDKESVEALMNVIVD 599 Query: 597 IDKLIKDFYPNHD--KTFIEQAVISG---VFNCESDQEINVSLASKLANRLNFIAEKSEK 651 ++ + + F+E G F E+ + + +S L E+++K Sbjct: 600 LESFLTRIEKKGMSFREFLEAKNEEGQYPRFQIETVEGFRFAYSSDEFEALKTADEEAQK 659 Query: 652 SWHGS----------INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 H ++ + + ++ + + + F N + N Sbjct: 660 LQHEQKLASMPEAEITDDMRVFKAKRLHFIELYEPENLEKLINRIKPFNFSFENYLLVNG 719 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 + NG+ + ++D I GRKGI +QRYKGLGEMNA QLWETT++P+ R+ Sbjct: 720 PLLTVRTENGEDVLCHTLREVIDLIRDNGRKGIEIQRYKGLGEMNADQLWETTMDPEKRT 779 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L++V + DA AD +F+ LMGDEV PRR FI++++L LDI Sbjct: 780 LIKVTLPDAVAADHMFTMLMGDEVPPRRAFIEQHALSVKDLDI 822 >gi|315639365|ref|ZP_07894527.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter upsaliensis JV21] gi|315480691|gb|EFU71333.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter upsaliensis JV21] Length = 770 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 357/804 (44%), Positives = 496/804 (61%), Gaps = 42/804 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y +I++LKGL+AV+KRP MYIGDT+ +GLHHMIYEV+DN+IDE++ G+ D I + Sbjct: 2 QENYGEGNIKVLKGLEAVRKRPGMYIGDTN-INGLHHMIYEVVDNSIDEAMAGHCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GSC VSDNGRGIP +H E + V++T LHAGGKF+Q +YKVSGGLHGVGVS Sbjct: 61 ELTTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++REG IY F G + + + G + TGT + F P +IF + + Sbjct: 121 VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESK-KTGTSIEFFPDEEIFELTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R R + ++GGI FVS D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVG--RNESFHFEGGISQFVS--DLNKKQALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI DN+++++A+ +ND Y EN+L F NNI DGGTH +G R LTR IT+YVE Sbjct: 236 PIFFSVDEDNVNVEVALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTRVITNYVEA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +++S+K+P+P+F QTK KL SS VR +V + LS Sbjct: 296 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534 Query: 547 GKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 G+ Y+KDE++L ++LI + + I NDL++F+ ++KD Sbjct: 535 GQKREIYLKDEKALNEFLIEVGIE------NSNYEGIGLNDLKDFLKIVAAYRSVLKDLE 588 Query: 606 PNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + IE + N E + I L + N LN ++E + + Sbjct: 589 KRFNVISVIRYLIENPDLIKNSNEELFKIIKAFLEKQGHNILNSYLNENELRIYVQTESG 648 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 E+ ++ +I+E L Sbjct: 649 -----------LEELIINDDLFSHPLYTEASYIFTKIKERELNFE-----------RDIL 686 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +LD + +KG +QRYKGLGEMN QLWETT++P R LL++ I DA +ADD F+ Sbjct: 687 DILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSIRRLLKITIEDAKRADDTFNLF 746 Query: 781 MGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR++IQ ++ LD+ Sbjct: 747 MGDEVEPRRDYIQAHAKDVKHLDV 770 >gi|57506226|ref|ZP_00372145.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195] gi|57015494|gb|EAL52289.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195] Length = 770 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 358/804 (44%), Positives = 496/804 (61%), Gaps = 42/804 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y +I++LKGL+AV+KRP MYIGDT+ +GLHHMIYEV+DN+IDE++ G+ D I + Sbjct: 2 QENYGEGNIKVLKGLEAVRKRPGMYIGDTN-INGLHHMIYEVVDNSIDEAMAGHCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GSC VSDNGRGIP +H E + V++T LHAGGKF+Q +YKVSGGLHGVGVS Sbjct: 61 ELTTEGSCIVSDNGRGIPVGMHPTENMPTLTVVLTVLHAGGKFDQDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L ++REG IY F G + + + G + TGT + F P +IF + + Sbjct: 121 VVNALSKKLVATVQREGKIYRQEFAKGQIASEFGIIGESK-KTGTSIEFFPDEEIFELTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+ L R REL++LN + I+ D R R + ++GGI FVS D +KK + Sbjct: 180 FDYEILAKRFRELAYLNPKITINFKDNRVG--RNESFHFEGGISQFVS--DLNKKQALTK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI DN+++++A+ +ND Y EN+L F NNI DGGTH +G R LTR IT+YVE Sbjct: 236 PIFFSVDEDNVNVEIALLYNDTYSENLLSFVNNIKTPDGGTHETGFRMGLTRVITNYVET 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +++S+K+P+P+F QTK KL SS VR +V + LS Sbjct: 296 NASAREKDNKITGEDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVRPIVNKASFEYLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK I+ K L A+ R+AA++AR+LTR+K L I +LPGKLADC +DP +SE Sbjct: 356 YFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSIGTLPGKLADCQSKDPSESE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L S++I +ITA G GIG Sbjct: 416 IYLVEGDSAGGSAKQGRERAFQAILPLRGKILNVEKARLDKILKSEQIQNMITAFGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR M L+ NG +Y+ +PPLY + Sbjct: 476 ED-FDLTKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQPPLYRYKK 534 Query: 547 GKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 G+ Y+KDE++L ++LI + + I NDL++F+ ++KD Sbjct: 535 GQKREIYLKDEKALNEFLIEVGIE------NSNYEGIGLNDLKDFLKIVAAYRSVLKDLE 588 Query: 606 PNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + IE + N E + I L + N LN ++E + + Sbjct: 589 KRFNVISVIRYLIENPDLIKNSNEELFKIIKAFLEKQGHNILNSYLNENELRIYVQTESG 648 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 E+ ++ +I+E L Sbjct: 649 -----------LEELIINDDLFSHPLYTEASYIFTKIKERELNFE-----------RDIL 686 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +LD + +KG +QRYKGLGEMN QLWETT++P R LL++ I DA +ADD F+ Sbjct: 687 DILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSIRRLLKITIEDAKRADDTFNLF 746 Query: 781 MGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR++IQ ++ LD+ Sbjct: 747 MGDEVEPRRDYIQAHAKDVKHLDV 770 >gi|3510605|gb|AAC33551.1| gyrase subunit B [Chlamydia trachomatis] Length = 796 Score = 788 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 357/808 (44%), Positives = 503/808 (62%), Gaps = 27/808 (3%) Query: 11 DADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNM 70 A I +L+GL AV++RP MYIGDT G +GLHH++YEV+DN+IDE++ G+ + V + Sbjct: 1 SASVITVLEGLQAVRERPGMYIGDT-GVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILE 59 Query: 71 DGSCTVSDNGRGIPTDLHKEEG------ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 DG ++SDNGRGIP +H++E ISA EV++T LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 DGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS ++ ++G Y M F G L V G + GTEV F P IFS Sbjct: 120 VSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQVLGPT-DKRGTEVLFYPDPAIFST 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+ L RLREL+FLN I D R ++ FY+GGI++FVSYL+++K+ L Sbjct: 179 CVFDRAILMKRLRELAFLNRGATIVFEDDRDTGFDKVVFFYEGGIQSFVSYLNQNKEILF 238 Query: 245 QSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PI IQGSR +I + A++WN GY E + + NNIP + GGTHL+G +ALTR + Sbjct: 239 PNPIYIQGSRPGDDGDIEFEAALQWNSGYSELIYSYANNIPTRQGGTHLTGFSTALTRAV 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY++ SK DK S+ G+D +EG +++S+K+P+P+F QTK+KL +S+V SV + Sbjct: 299 NSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLGNSDVGSVSQQIS 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P AK IV KV A+ R+AA+RAR+LT RK LD A LPGKL DC E+ Sbjct: 359 GEVLTTFLEENPQIAKTIVDKVFVAAQAREAAKRARELTFRKSALDSARLPGKLIDCLEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP+K E+++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR K+ +QEIG++I A Sbjct: 419 DPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVFQNQEIGSIIAA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D+F+++KLRY +IIIMTDADVDG+HIRTLLLTFF+R M +LI N +YI +PP Sbjct: 479 LGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALIENECVYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY +++ K +Y+ E+ ++ YL+N E +F D+ + L F++ L+++ Sbjct: 539 LYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRGEALETFVNLILEVESF 598 Query: 601 IKDFYPNH--DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 I F++ E S L + E+ E + + Sbjct: 599 IVSLEKKAIPFSEFLDMFRDGAYPLYYYPPESGKQGGSYLYSH-----EEKEAAIAANEE 653 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 ++ +++ V E+ + Y + I + Sbjct: 654 SASRILELYKGSVLEELQRDLGDYGYDIRNYLHPKGSGITVSTEDP-----KISPYVCYT 708 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 ++D + +GRKGI +QRYKGLGEMNA QLW+TT+NP+ R+L+RV + DA +AD +F+ Sbjct: 709 LKEVIDYLKGLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAVEADHIFT 768 Query: 779 RLMGDEVEPRREFIQENSLPS---ALDI 803 LMG+EV PRREFI+ ++L LDI Sbjct: 769 MLMGEEVPPRREFIKSHALSIRMNNLDI 796 >gi|224418813|ref|ZP_03656819.1| DNA gyrase subunit B [Helicobacter canadensis MIT 98-5491] gi|253826663|ref|ZP_04869548.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491] gi|313142332|ref|ZP_07804525.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491] gi|253510069|gb|EES88728.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491] gi|313131363|gb|EFR48980.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491] Length = 772 Score = 788 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 352/805 (43%), Positives = 500/805 (62%), Gaps = 39/805 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N Y SI++LKGL+AV+KRP MYIGDT+ +GLHH+IYEV+DN+IDE++ GY + I Sbjct: 1 MENKQYSGSSIKVLKGLEAVRKRPGMYIGDTN-TNGLHHLIYEVVDNSIDEAMAGYCNEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++TL GS + DNGRGIP D+H E I AA V++T LHAGGKF+Q SYKVSGGLHGVG Sbjct: 60 SITLTQQGSAIIKDNGRGIPVDIHPTENIPAATVVLTVLHAGGKFDQDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS L++ I + G IY +F GI + L + G D GT + F+P IF + Sbjct: 120 ISVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIGECK-DNGTIIEFIPDDSIFEI 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F + L R +EL++LN V I D+R +GG+ FV+ D +KKPL+ Sbjct: 179 TEFQREILSKRFKELAYLNKQVTIHFKDERDGFNEIYHF--EGGLNQFVN--DLNKKPLI 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I +G+ +++ I +A+ +N+G+ E VL F NNI DGGTH SG R LTR IT+Y+ Sbjct: 235 STIINFEGTENDVEIQIALAYNEGFEEKVLSFVNNIRTIDGGTHESGFRMGLTRVITNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ + G+D REG +++S+K+ DP+F QTK KL S+ VR +V+ + L Sbjct: 295 EANANAREKDSKITGEDIREGLVAIVSVKVIDPQFEGQTKGKLGSAFVRPIVQKLTYEKL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P EAK I++K L A+ R+AA++AR+LTR+K + +LPGKLADC +DP Sbjct: 355 AKFFEENPNEAKAIMQKALLAARGREAAKKARELTRKKETFSVGTLPGKLADCQSKDPSI 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S+EI LITALG G Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FDI K+RY+KIIIMTDADVDG+HI+TLL+TFFFR + +I +G+LYI +PPLY Sbjct: 475 IGED-FDITKIRYNKIIIMTDADVDGSHIQTLLMTFFFRYLRGIIESGYLYIAQPPLYRF 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE++L +YLI + I DL F + + Sbjct: 534 KKGKKEIYLKDEKALSEYLIENGIENFEFQ------GIGTKDLMEFFKIVAHYRSTLNEL 587 Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + IE + G+ N + +I + + N LN + E+ + ++ Sbjct: 588 EKRFQLIEIVRYLIENPDLIGMQNQDLYAKIKEKIQNLNFNILNEMIEEQRIHLYVQTDS 647 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +K ++ + ++++E L + + P Sbjct: 648 GLVDIK-----------IDEDLFTHPLFEEAHFVFSKLKE---RDLGFLNG------SDP 687 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L+ I +KG +QRYKGLGEMN QLWETT+ P+ R L+RV+I D +A ++FS Sbjct: 688 VEMLEKIEESSKKGADIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDIEEASEVFSL 747 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRRE+IQ ++ LD+ Sbjct: 748 FMGDEVEPRREYIQAHAKDVKHLDV 772 >gi|195953991|ref|YP_002122281.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933603|gb|ACG58303.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1] Length = 786 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 487/799 (60%), Gaps = 17/799 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y D+I+++ GL+ V+ RPSMYIGD E GLHH+I+E++DN++DE++ GYA I V Sbjct: 2 QEYGVDAIKVVTGLEHVRLRPSMYIGDIS-ERGLHHLIWEIVDNSVDEAMAGYATHIRVH 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S TV DNGRGIP +HK+ G A EV++T L AGGKF++K+Y+ SGGLHGVG SV Sbjct: 61 IHQDDSITVEDNGRGIPVYIHKDVGKPAVEVVLTVLGAGGKFDKKAYQYSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL + + R+G IY + G+ L V G GT++TF P ++IF Sbjct: 121 VNALSEWLIVEVYRDGKIYRQEYERGVPKTELQVIGDTT-KRGTKITFKPDAEIFETTKI 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +D ++ R+REL++LN +V +ID R + + GI YL K+PL Sbjct: 180 KFDIVEKRIRELAYLNKNVTFEIIDDRLDKHLVYKF--ERGIIELAEYLAEGKEPLFNDV 237 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I I+ +D +++A ++ Y E++ F NNI +GGTH++G RSAL++ ++ + Sbjct: 238 IYIESGKDGTLVEIAFKYTKDYKESLESFVNNIKTIEGGTHVTGFRSALSKVVSKLSQNI 297 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 SK+ K G+D REG +V+S K+P+P+F QTK KL + E +++VES + L+ + Sbjct: 298 KISKELKEMFTGEDLREGLVAVVSCKVPEPQFEGQTKTKLGNQETKNIVESITVEFLTDY 357 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 E+H K+IV+K ++A++ R+AA++A+DL RRK L+ SLPGKLADCSE+DP K E+ Sbjct: 358 FEKHQDILKLIVEKAIEAALAREAAKKAKDLVRRKSFLEDTSLPGKLADCSEKDPSKCEI 417 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEG+SAGGSAKQGR R QAILPL+GKILNVE+AR DK LS++EI +I+ALG IG+ Sbjct: 418 FIVEGESAGGSAKQGRDRRFQAILPLKGKILNVEKARIDKALSNEEIRAIISALGCNIGE 477 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D D++ LRYHK IIMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY + G Sbjct: 478 DV-DLSALRYHKTIIMTDADVDGSHIRTLLLTFFYRFMTKLIENGHVYIAQPPLYKVKIG 536 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K Y+KD++ LE +L+N + ++ + + L N ++ + I Sbjct: 537 KKETYIKDDKELEKFLLNI-IRTDLSITDAKSNTYRGDVLINMLNTIKEQHNTIAQILNK 595 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667 +K I + + + + D+ + + KS S ++ D + Sbjct: 596 RNKDVI-----TYLLSNKIDESYLKDEQKAKKLLEDIQSMKSISSAKLKYDDFDSSYSIV 650 Query: 668 ARGVQEQF-VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDT 725 + + F +++ + S K +E + +SL I P L Sbjct: 651 MYDIYQNFSIIDIDFLTSGTYKK---LFEEHKEFFNYPISLKLGHKVKNIEKPAEDLYQD 707 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 I + + GI +QRYKGLGEMN QLWETT+NP+TR LLRV + DA++AD +FS LMG+ V Sbjct: 708 IINFVKDGIEIQRYKGLGEMNPEQLWETTMNPNTRRLLRVSLEDAAEADRIFSILMGENV 767 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRREFI+ + LD+ Sbjct: 768 EPRREFIETYAKEVRNLDV 786 >gi|157165358|ref|YP_001465928.1| DNA gyrase subunit B [Campylobacter concisus 13826] gi|112801785|gb|EAT99129.1| DNA gyrase, B subunit [Campylobacter concisus 13826] Length = 769 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 362/803 (45%), Positives = 503/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++Y A++I++LKGL+AV+KRP MYIGDT+ SGLHHMIYEV+DN+IDE++ GY D I V Sbjct: 2 ENNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GS +SDNGRGIP D+H E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 ELTREGSAIISDNGRGIPVDMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L + IKR+G ++ F GI + L V N TGT+V F P IF V + Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFAKGIPQSDLEVI-KTTNRTGTQVEFWPDDSIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ + L R REL++LN + I+ D+R+ R + ++GG+E+FV+ + +K + Sbjct: 180 FDDEILVKRFRELAYLNPKITINFKDQRNG--RSESFHFEGGLESFVTDM--NKANAVSK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + G D++ +D A+ +ND Y EN+L F NNI DGGTH +G R+ LTR IT+YV+ Sbjct: 236 AVSFSGGEDDVMVDFALLYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYVQA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL SS V+ +V+ V D L+ Sbjct: 296 NAAAREKDTKITGEDIREGLIAVVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EA+ I+ K L A+ R+AA++ARDLTR+K + + +LPGKLADC +DP SE Sbjct: 356 YFEENPIEARAIMDKALMAARGREAAKKARDLTRKKESMSVGTLPGKLADCQSKDPVISE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+L S EI +ITALG GIG Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSDEIKNMITALGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ NG +Y+ +PPLY + Sbjct: 476 -DEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLNKVVENGHIYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y+KDE++L ++LI + I DL +F+ ++K+ Sbjct: 535 GKKEIYLKDEKALNEFLIETGIEGVDI------EGIGSADLIDFLKIVAAYRSVLKELEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE I E + + L ++ N LN E + + Sbjct: 589 RFNVLSAIRYMIENPDIVSKSYNEIFEILRDFLKAEGHNILNHYVSDDEVRIYVQTESG- 647 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 E+ V+ + + + S +I+E L + + Sbjct: 648 ----------LEELVVNENLFTNPLYEEALYISQKIKERGLDLH-----------SDVID 686 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 +LD + +KG +QRYKGLGEMN QLWETT+NP+ R LL++ I DA A D F+ M Sbjct: 687 VLDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKIDINDAISASDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR +IQ+++ LDI Sbjct: 747 GDEVEPRRNYIQDHAKDVKYLDI 769 >gi|94967039|ref|YP_589087.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345] gi|94549089|gb|ABF39013.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345] Length = 879 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 360/852 (42%), Positives = 518/852 (60%), Gaps = 58/852 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +S Y+ DSI++L G++AV+KRP+MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 31 SSDYNEDSIKVLGGMEAVRKRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGHADRIDV 89 Query: 67 TLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+++D S TV DNGRGIPT E I AA+V+MT LHAGGKF+ +YKVSGGLHGVG Sbjct: 90 TIHIDNSITVIDNGRGIPTGDMDIDGEMIPAAQVVMTVLHAGGKFDSSNYKVSGGLHGVG 149 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALSS L+L I R+G++++ + G+ L +G GT++ F+P + IF+V Sbjct: 150 VSCVNALSSLLELEIWRDGHVWQQEYSEGVPTTKLKKSGKTTKL-GTKIHFIPDAKIFTV 208 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS-----PEPREITMFYKGGIEAFVSYLDRH 239 ++NYDTL +RLREL+FLN + I+L D+R+ E + Y GGI F+ +L+R Sbjct: 209 SEYNYDTLANRLRELAFLNKGLLITLTDERTTDPKTGESKHQEFKYTGGIAEFIKHLNRG 268 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + PI ++ RD +++++A+++ND Y E V F NNI DGGTHL G RS+LTR Sbjct: 269 KSVLHEKPIYMEAERDGVAMEIALQYNDAYSETVFSFANNINTVDGGTHLQGFRSSLTRT 328 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I ++ K K ++ GDD REG +V+S+K+ P+F QTK KL +S++ +V++F Sbjct: 329 INYAGQQLGLFKDVKENLSGDDVREGLVAVISVKLSQPQFEGQTKGKL-NSDIAGIVQAF 387 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ L A+ E++P A+ I+ K ++AS R+AAR+ARDLTRRKG LD LPGKLADCSE Sbjct: 388 VNERLGAFFEQNPPVARKIINKAIEASRAREAARKARDLTRRKGALDGGGLPGKLADCSE 447 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R P++ E++LVEG+SAGG+AKQGR R QAILPL+GKILNVE+AR+DKML +EI +IT Sbjct: 448 RQPERCEVYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEEIRAMIT 507 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FD KLRY KII+MTDADVDG+HIRTLLLTFFFR M LI G ++I +P Sbjct: 508 ALGTGIGKDDFDYAKLRYGKIILMTDADVDGSHIRTLLLTFFFRHMQELIKRGNVFIAQP 567 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK QY+K+E ++ ++ + + + + L F+ + Sbjct: 568 PLYRIKKGKFEQYIKNEAEFVKVMVKRAADGMVIRYGEGAAKLEGAQLTRFMTSLNEYIG 627 Query: 600 LIKDFYPNHDK----TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + +E+ +S + E + + + + + L + IA+ + Sbjct: 628 FFEKVSKRVRDERVVELMEKLELSKKVDFEGEAKKSPAKVAALEKEIKAIAKDRKLRDIE 687 Query: 656 SI--NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + + ++ R + +L S + +I++ + K Sbjct: 688 ARFDDEHNLWFVRFVNDQGAEHLLNWELATSPEYRQMMSKYAQIKDFMEPPFVIETASKK 747 Query: 714 -----------------------------------------IKITGPCSLLDTIFSIGRK 732 ++ T L D + S G+K Sbjct: 748 SSSAAEAAEDLSDAERADLEKAEQKSAKVAVRRTRAGEPEIVEKTNVRELFDYVLSEGKK 807 Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 S+QRYKGLGEM A QLW TT++P+ R+LL VK+ D ++ + +FS LMG++VE RR+FI Sbjct: 808 EYSVQRYKGLGEMTAEQLWMTTMDPERRTLLEVKLEDMTETETIFSTLMGEDVEARRKFI 867 Query: 793 QENSLPS-ALDI 803 +EN+L LDI Sbjct: 868 EENALDVKNLDI 879 >gi|291288761|ref|YP_003505577.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885921|gb|ADD69621.1| DNA gyrase, B subunit [Denitrovibrio acetiphilus DSM 12809] Length = 792 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 350/798 (43%), Positives = 497/798 (62%), Gaps = 13/798 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SY DSI++L+GL+AV++RP MYIG G+ GLHH++YEV+DN+IDE+ G+ D I + Sbjct: 6 NSYSDDSIRVLEGLEAVRQRPGMYIGSV-GQRGLHHLVYEVIDNSIDEASAGFCDTIDII 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +++DGS TV DNGRGIP +H + G EV+MT LHAGGKF+ SY SGGLHGVG+SV Sbjct: 65 IHIDGSVTVEDNGRGIPVGIHPKVGRPTVEVVMTTLHAGGKFDSGSYFASGGLHGVGISV 124 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS + ++ +KR+G +Y + G TG GT+VTF P IF +F Sbjct: 125 VNALSEYAEVTVKRDGGVYYQKYERGTAVTEFKRTGDTS-KRGTKVTFKPDHQIFETLEF 183 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +Y+TL R REL+FLNS ++I + D+R + +GGI ++V YL++ K ++ P Sbjct: 184 SYETLTRRFRELAFLNSGLKIKITDERYDKA--DEYHAEGGIVSYVKYLNKAKTVIIPEP 241 Query: 248 IR-IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I ++ D + ++ A+ +ND Y EN+ F NNI ++GGTH +G ++ T+ ++V K Sbjct: 242 IYHMEMYEDAVQVEFAIIFNDSYTENLYSFVNNIHTEEGGTHEAGFKAGYTKVFNNFVNK 301 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 KDK ++ GDD REG ++++SI++ +P F QTK KL S+ ++ VES + L Sbjct: 302 HG-LNKDKVNLTGDDVREGMSAIISIRLNEPVFEGQTKTKLGSAIAKTAVESIMGKFLPD 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P K I++K + A R+AAR+A++LTRRK VL++++LPGKLADC E+DP KSE Sbjct: 361 FFEENPAVIKKILEKAMQAFRAREAARKAKELTRRKNVLEVSTLPGKLADCQEKDPAKSE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQ R R QAILPL+GKILNVE+ARFDK+LSS EI LITALGTGIG Sbjct: 421 LFIVEGDSAGGSAKQCRDRRTQAILPLKGKILNVEKARFDKLLSSNEIRALITALGTGIG 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D F+I KLRYHKIIIMTDADVDGAHI TL++TFFFR M +I G+LY+ PPLY + + Sbjct: 481 KDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYMASPPLYKVKK 540 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GKS +Y+++EE++ +YL++Q L + K L N I + K K Y Sbjct: 541 GKSERYIQNEETMVNYLLDQGLDGVDIAHV--QPHRYKELLENLIKLNRMVTKFEKKGYS 598 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + E ++ LA+ + +E ++ +I + Sbjct: 599 RKLVKLLASYDDLHFSKLEDKDFVDGLLAAMQKYGILDQYVTNEIEFNEEYGRYNISLA- 657 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + V + + + + R ++E L +G+ + + Sbjct: 658 -SHSVT--VSINTDLLATPEFRELRRLGVYLKEIGDAPYKLNVDGEITNFETLTEFVSFV 714 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 G+KG+ +QRYKGLGEMN QLWETT++P +R+L RV+I DA A++LFS LMGD V Sbjct: 715 EQRGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTLYRVRIEDAEMANELFSLLMGDVVA 774 Query: 787 PRREFIQENSLPS-ALDI 803 PRREFI+ N+L LDI Sbjct: 775 PRREFIENNALNVRNLDI 792 >gi|225851073|ref|YP_002731307.1| DNA gyrase, B subunit [Persephonella marina EX-H1] gi|225645970|gb|ACO04156.1| DNA gyrase, B subunit [Persephonella marina EX-H1] Length = 805 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 338/811 (41%), Positives = 503/811 (62%), Gaps = 21/811 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + Y A++I +++GLD V+ RP+MYIGD E GLHH+++E++DNA+DE++ G+A Sbjct: 6 DTVTTEEYRAEAIDVVEGLDHVRARPAMYIGDIS-ERGLHHLVWELIDNAVDEAMAGFAK 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I+V ++ DGS TV D+GRGIP D+H + G+ A +++ T L AGGKF++K+Y+ SGGLHG Sbjct: 65 NISVVIHEDGSVTVEDDGRGIPVDIHPKTGLPAVQMVFTVLGAGGKFSKKAYQYSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS WL + + R+G +Y + G PL G + TGT+VTF+P IF Sbjct: 125 VGASVVNALSRWLVVEVYRDGKVYRQEYEFGKPITPLKTVGET-HKTGTKVTFMPDDTIF 183 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F +DT+ R REL+FL V+ + D+R + Y+ GI+ FV L+ K P Sbjct: 184 ETVKFKFDTISKRCRELAFLLPGVRFFVSDERVD--IDEEYLYEEGIKDFVRVLNAAKDP 241 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L I ++G +D I +++A ++ Y+E + F NN+ +GGTH++G R ALTR + Sbjct: 242 LFSDVIYVKGEQDRIIVEVAFQYTRSYNEVIESFVNNVKTVEGGTHVAGFRGALTRAMNK 301 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 + K+ K V G+D REG T+V+S+K+P+P+F QTK KL + EV+ VVE+ V + Sbjct: 302 TLSGMRLPKELKSGVKGEDLREGLTAVISVKVPEPQFEGQTKSKLGNQEVKRVVENIVGE 361 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L + +++ A I +K ++A++ R+AA++A++++RRK L+ SLPGKLADCSE DP Sbjct: 362 ALLEFFDKNKDIAVKIAEKAIEAAIAREAAKKAKEISRRKSFLEDTSLPGKLADCSETDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + ELF+VEG+SAGGSAKQGR R QAILPL+GKILNVE+AR DK+LS+ EI ++I A+G Sbjct: 422 EICELFIVEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNDEIRSIINAIG 481 Query: 483 TGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 TGIG + FD++KLRYHKII+M DADVDGAHI TLLLT F+R P +I NGFLYI Sbjct: 482 TGIGLSTEEDDEGFDLSKLRYHKIILMADADVDGAHITTLLLTLFYRYFPQIIENGFLYI 541 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + +G+S YVKD+E L + + + ++K +++ A + Sbjct: 542 AQPPLYKLKKGRSEIYVKDDEELAKIV----IDFASDEITFEGKNLTKIQIKDLAKKAKE 597 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 L + Y DK I+ + N D + ++ +L + + + Sbjct: 598 YSDLKRSIYKRKDKKVIDAVID---LNITEDDLTDEDRVKEIVQKLREKLPEYNVYYERN 654 Query: 657 INNSDILV--KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT-ILSLICNGDK 713 + DI + R R Q Q ++ + S+ + S+ I++ L++ + Sbjct: 655 LFEGDIEIFCVREERFKQVQNKIDDDFLTSYAYRRILELSSEIKQIVGELPLTMNYKNKE 714 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + +T L D I+ G G+ +QRYKGLGEMN QLWETT+NP TR L++V + DA+ A Sbjct: 715 VTVTDLDQLYDVIWEAGIHGVEIQRYKGLGEMNPEQLWETTMNPKTRRLMQVTLEDAALA 774 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D++FS LMG++VEPR+EFI + + LD+ Sbjct: 775 DEVFSILMGEKVEPRKEFIMKYAKEVRNLDV 805 >gi|257461146|ref|ZP_05626244.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268] gi|257441520|gb|EEV16665.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268] Length = 770 Score = 784 bits (2026), Expect = 0.0, Method: Composition-based stats. Identities = 358/799 (44%), Positives = 498/799 (62%), Gaps = 32/799 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ GY D I V Sbjct: 2 KQNYGASNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGYCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + +GSC VSDNGRGIP D+H E I AA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 EITSEGSCIVSDNGRGIPVDIHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L IKR+GNIY F GI L N TGT + F P +IF + + Sbjct: 121 VVNALSKKLVATIKRDGNIYRQEFAKGIPTTELEKI-KTTNRTGTTIEFWPDGEIFEILE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ + L R REL++LN + I+ D R+ R+ ++GG+E+FV+ + +K P + Sbjct: 180 FDDEILSKRFRELAYLNPKITINFKDNRTG--RDEHFHFEGGLESFVNDM--NKAPAISK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + S D++ +D A+ +N+ Y+EN+L F NNI DGGTH +G R+ LTR IT+YV Sbjct: 236 AVSFSDSADDVMVDFALMYNETYNENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYVAA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +V+S+K+P+P+F QTK KL SS V+ +V+ + LS Sbjct: 296 NAAAREKDTKITGDDVREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMAFEVLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425 + EE+P+EA+ I+ K L A+ R+AA++ARDLTR+K ++ PGKLADC +D S Sbjct: 356 YFEENPIEARAIMNKALLAARGREAAKKARDLTRKKDNINSVGTLPGKLADCQSKDASIS 415 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++L S+EI +ITA G GI Sbjct: 416 EIYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKARLDRILQSEEIKNMITAFGCGI 475 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ F+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ NG++Y+ +PPL+ Sbjct: 476 GEE-FNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPIVENGYVYLAQPPLFRYK 534 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK Y+KDE++L ++LI + I DL +++ L+ + Sbjct: 535 KGKKEIYLKDEKALSEFLIETGIDMGEF------EGIGNEDLIDYLKIVSNYRSLLNELK 588 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + A+ + N E+ L L RL + + +N+ I + Sbjct: 589 KRFS---VLSAIRFLIENDEARSLGYEELFKILKPRLE---SEGFNILNSYVNDEGIRIY 642 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 EQ V++ + +F N I E + I S I + D +LD Sbjct: 643 VQTPSGLEQLVIDEN-----------LFGNYIFEEAIRIYSKIKDRDVNFGKDFIEILDE 691 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 I +KG +QRYKGLGEMN QLWETT++P+ R LL++ I DA A D F+ MGDEV Sbjct: 692 IEKSSKKGAYIQRYKGLGEMNPEQLWETTMSPENRRLLKISIADAQSASDTFNLFMGDEV 751 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR +IQ+++ LDI Sbjct: 752 EPRRNYIQDHAKDVKHLDI 770 >gi|206889996|ref|YP_002247871.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741934|gb|ACI20991.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 759 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 358/802 (44%), Positives = 520/802 (64%), Gaps = 60/802 (7%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SY A+ I+ILKGL+ V+ RP+MYIG T G GLHH++YEV+DN++DE+L G+ + I Sbjct: 15 NKEESYKAEHIKILKGLEGVRTRPAMYIGST-GVEGLHHLVYEVVDNSVDEALAGFCNKI 73 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKE--EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 V L+ DGSC+V DNGRGIPT++H + E +A E+++T LHAGGKF K+YKVSGGLHG Sbjct: 74 EVRLHTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS WL++ ++R+G + + GI + V G TGT++ F +IF Sbjct: 134 VGLSVVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTE-KTGTKIKFKADPEIF 192 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 V +F+ + L HR +ELS+LN ++I LID+R + +GGI +FV L++ KKP Sbjct: 193 EVTEFSREILAHRFKELSYLNRGLKIILIDER--DGYVEEFIKEGGIVSFVEDLNKGKKP 250 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L PI I G +D + +++A+++N+GY E +L F NNI K+GGTHL G +SALTR I S Sbjct: 251 LHPKPIYITGQKDRVIVEIAIQYNEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINS 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K+ K S+ G+D REG V+S+K+P+P+F QTK KL +SEV+ +VE+ +N+ Sbjct: 311 YAMLNGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNE 370 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS WLEE+P AK I++K DA+ R+AA++A++LTRRKG+L+ +LPGKLADC+E+DP Sbjct: 371 KLSRWLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDP 430 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +ELF+VEGDSAGGSAKQ R R +QA+LPLRGKILNVE+AR DKML+S+EI TLITA+G Sbjct: 431 SHAELFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIG 490 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG++ F+ +RYHKII+MTDADVDGAHIRTLLLTFF+RQM LI G+LYI +PPLY Sbjct: 491 GGIGKEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLY 550 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I RGK +Y++ E+ ++L++ ++ E F + + +K + + +I ++ Sbjct: 551 RIKRGKWERYIQTEDEFHEFLMDIAVDE--ISFIEESELSTKKSFLKLLFEYGRI---LE 605 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +F F + ++ + + +Q +++ L N I Sbjct: 606 NFERKGFSPFYIENILETLQFQQDNQIVDLRDFETLQNIFEKI----------------- 648 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ +G++E + + +K L Sbjct: 649 ---KLIQGIRED----------------------------KNYIIRIKTEAVKTKSLWEL 677 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + + +KG+++QRYKGLGEMN QLWETT++P+ R+LL+V + DA +A+++F+ LMG Sbjct: 678 YNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTVEDAQRANEIFTILMG 737 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 DEVEPR+EFI ++L LDI Sbjct: 738 DEVEPRKEFIVRHALEVRNLDI 759 >gi|268678647|ref|YP_003303078.1| DNA gyrase subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268616678|gb|ACZ11043.1| DNA gyrase, B subunit [Sulfurospirillum deleyianum DSM 6946] Length = 770 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 358/797 (44%), Positives = 491/797 (61%), Gaps = 29/797 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S+Y AD+I++LKGL+AV+KRP MYIGDT+ +GLHH+IYEV+DN+IDE++ GY I V Sbjct: 2 SNYGADNIKVLKGLEAVRKRPGMYIGDTN-INGLHHLIYEVVDNSIDEAMAGYCTNIKVE 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GS ++DNGRGIP H+ E +SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV Sbjct: 61 LTREGSAIITDNGRGIPVGWHEGENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS L IKREGN + F GI PL V N TGT + F P + IF +F Sbjct: 121 VNALSSKLVATIKREGNEHRQEFACGIPVTPLDVV-KTTNRTGTIIEFWPDATIFETTEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++ L R REL++LN + I L D+R +GGI+ FV D +KK + Sbjct: 180 QFEILATRFRELAYLNPKITIELKDQRDGRTELYHF--EGGIKQFVL--DLNKKEKVAEA 235 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + S +++ ID+AM +N Y E + F NNI DGGTH SG R+ LTR IT+Y+ + Sbjct: 236 VHYTASVEDVEIDIAMMYNSTYSEILYSFVNNIKTIDGGTHESGFRAGLTRAITNYISLN 295 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 G ++ + GDD REG +++S+K+P+P+F QTK KL SS V+ +V+ V + L + Sbjct: 296 AGVREKDSKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKLVYEQLVKY 355 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EE+P+EAK I+ K L A+ R+AA+ ARDLTRRK + I +LPGKLADC +DP EL Sbjct: 356 FEENPIEAKAIMNKALMAARGREAAKNARDLTRRKDAMSIGTLPGKLADCQSKDPSVCEL 415 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 +LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG GIG Sbjct: 416 YLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG- 474 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D F+ KLRYHK+IIMTDADVDG+HI+TLLLTF FR + ++ NG++Y+ +PPLY +G Sbjct: 475 DEFNEEKLRYHKLIIMTDADVDGSHIQTLLLTFLFRFLRPIVDNGYVYLAQPPLYRYKKG 534 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K Y+KD+ + +LI + I NDL +F ++K+ Sbjct: 535 KKEIYLKDDTEMNAFLIESGMDSIDI------EGIGTNDLIDFFKIISAYRGILKELEKR 588 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667 + + +I E+ I +S + ++I + +N I + Sbjct: 589 FSMIEVVRYLI------ENPDLIGLSSQELFGSIQSYIQNLGYNILNHYVNEESIHLFIQ 642 Query: 668 ARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIF 727 + E+ +L+ S + + R +I+E + D P +LD I Sbjct: 643 TKDGLEELLLDESFYTNPLYEEARYIFTKIQE---------RDFDVFDGRDPIDVLDEIE 693 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 +KG +QRYKGLGEMN QLWETT+NP+ R LL+VK+ DA A D F+ MGDEVEP Sbjct: 694 KSAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLQVKVEDAEIASDTFTLFMGDEVEP 753 Query: 788 RREFIQENSLPSA-LDI 803 RR++IQ+++ LD+ Sbjct: 754 RRQYIQDHAKDVKHLDV 770 >gi|224437090|ref|ZP_03658071.1| DNA gyrase subunit B [Helicobacter cinaedi CCUG 18818] gi|313143561|ref|ZP_07805754.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] gi|313128592|gb|EFR46209.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] Length = 772 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 337/805 (41%), Positives = 491/805 (60%), Gaps = 39/805 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN++DE++ G+ D I Sbjct: 1 MEKKEYQASNIKVLKGLEAVRKRPGMYIGDTNSG-GLHHMIYEVVDNSVDEAMAGHCDRI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +TL M+GS + DNGRGIP D+H E + AA +++T LHAGGKF+Q +YKVSGGLHGVG Sbjct: 60 NITLTMEGSAIIEDNGRGIPVDIHPTENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L + IK+ G+IY F GI + L + G + GT + F P ++ V Sbjct: 120 VSVVNALSKKLIMTIKKNGHIYRQEFAQGIPQSELEIIGETK-EHGTIIEFYPDDEVMEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ L R +E+++LN ++ I D+R+ + GG++ F+ D + KPL+ Sbjct: 179 LEFDSQILTRRFKEMAYLNHNITIYFKDERTGQEESYHF--DGGLKQFIQ--DVNTKPLV 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + +++A+ +N+GY E VL F NNI DGGTH +G R+ L+R I +Y+ Sbjct: 235 SLIISFEALEQETEVEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAIMNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ V GDD REG +++S K+ DP+F QTK KL S+ V+ +V+ + L Sbjct: 295 EANANAREKDSKVTGDDVREGLVAIISTKVIDPQFEGQTKGKLGSAFVKPIVQKLTYEKL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P EA+II++K + A+ R+AA++ARDLT +K + +LPGKLADC +DP + Sbjct: 355 AKFFEENPTEARIIMQKAIMAARGREAAKKARDLTHKKESFSVGTLPGKLADCQSKDPSE 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S EI +ITA G G Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D F+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + L+ NG +YI +PPLY Sbjct: 475 IG-DEFNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQPPLYRY 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK+ Y+KDE +L +YL+ + I +L + ++K+ Sbjct: 534 KKGKTEIYLKDERALSEYLVENGIGNFSF------EGIGNKELLEVLKFIAHYRSILKEL 587 Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + +E + E Q I L +K N LN I + + + + Sbjct: 588 EKRYPMIDVVRYLVENDSFDNLTLNELSQNIESYLQAKECNILNKITSEEQITLYVQTKV 647 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + + G+ + ++ + Y++I ++ G+ Sbjct: 648 GLVEL-----GINDSLFMD-NFFQEARFIYQKIADRDLDFL---------KGE-----DL 687 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 + L+ I +K +QRYKGLGEMN QLWETT+ P R+LLRVKI + + D++F+ Sbjct: 688 IAFLEKIEESAKKDAYIQRYKGLGEMNPDQLWETTMTPANRTLLRVKIDNDADTDEIFTL 747 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR +IQE++ LD+ Sbjct: 748 FMGDEVEPRRAYIQEHAKDVKHLDV 772 >gi|223038508|ref|ZP_03608802.1| DNA gyrase, B subunit [Campylobacter rectus RM3267] gi|222880365|gb|EEF15452.1| DNA gyrase, B subunit [Campylobacter rectus RM3267] Length = 769 Score = 783 bits (2023), Expect = 0.0, Method: Composition-based stats. Identities = 360/803 (44%), Positives = 504/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A++I++LKGL+AV+KRP MYIGDT+ SGLHHMIYEV+DN+IDE++ GY D I + Sbjct: 2 QQNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GS +SDNGRGIP D+H E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 ELTREGSAIISDNGRGIPVDMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L + IKR+G ++ F GI + L + N TGT+V F P IF V + Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEII-KTTNRTGTQVEFWPDDSIFEVME 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ + L R REL++L+ + I+ D+R+ R + Y+GG+E+FV+ D +K + Sbjct: 180 FDDEILTKRFRELAYLSPKITINFKDQRNG--RNESFHYEGGLESFVT--DLNKNEAVSK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + G +++ +D A+ +ND Y EN+L F NNI DGGTH +G R+ LTR IT+Y+ Sbjct: 236 AVSFSGGEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL SS V+ +V+ V + LS Sbjct: 296 NAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFEVLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EA+ I++K L A+ R+AA++ARDLTR+K L I +LPGKLADC +DP SE Sbjct: 356 YFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQSKDPTISE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG GIG Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD +LRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ NG +Y+ +PPLY + Sbjct: 476 -DEFDSERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y+KDE +L ++LI + I DL +F+ ++K+ Sbjct: 535 GKKEIYLKDERALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKELEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + IE I E + + L ++ N LN + E + + Sbjct: 589 RFNVISAIRYMIENPDIISKSYVEIFEILRDYLQAQGHNILNSYVSEEEARIYVQTESG- 647 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 E+ ++ + + + S +I+E + + GD I + Sbjct: 648 ----------LEELLVNENLFTNPLYEEALYISQKIKERGVEL-----KGDVIDV----- 687 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L+ I +KG +QRYKGLGEMN QLWETT+NP+ R LL++ I DA A D F+ M Sbjct: 688 -LEEIEKNAKKGAYIQRYKGLGEMNPDQLWETTMNPENRRLLKININDAISASDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR +IQE++ LD+ Sbjct: 747 GDEVEPRRNYIQEHAKDVKHLDV 769 >gi|152991737|ref|YP_001357458.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1] gi|151423598|dbj|BAF71101.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1] Length = 773 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 353/806 (43%), Positives = 493/806 (61%), Gaps = 40/806 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y A +I++LKGL+AV+KRP MYIGDT GLHH++YEV+DN+IDE++ GY D I Sbjct: 1 MTMAEYGASNIKVLKGLEAVRKRPGMYIGDTS-TKGLHHLVYEVVDNSIDEAMAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL GS + DNGRGIP H E ISAA V++T LHAGGKF++ +YKVSGGLHGVG Sbjct: 60 KVTLTKAGSAIIEDNGRGIPVTEHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L L + ++G I+E SF GI PLV TG TGT++ F P IF+ Sbjct: 120 VSVVNALSKDLHLTVFKDGEIHEQSFQKGIPQEPLVATGPT-RKTGTKIEFWPDDSIFTE 178 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F + L R REL +LN S+ I D+R ++GGI+ FV + + KP Sbjct: 179 GVTFQKEILLKRFRELCYLNPSITIEFKDERDGTK--EKFHFEGGIKQFVEDM--NTKPP 234 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + QG D+I ID+A+ + D E L F NNI DGGTH +G R+ LTR ++SY Sbjct: 235 LSTAQFFQGKADDIEIDIALMYCDADSEKTLSFVNNIKTPDGGTHEAGFRAGLTRSMSSY 294 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +K+ + GDDC+EG +++S+++P+P+F QTK KL SS VR +V+ F ++ Sbjct: 295 ISKNASAKEKGTKITGDDCKEGLIAIVSVRVPEPQFEGQTKGKLGSSYVRPLVQKFFSEQ 354 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +LEE+P+EAK I+ +VL A+ RDAA+RA+DL +RK + I +LPGKLADC +DPK Sbjct: 355 FNKYLEENPVEAKAIMAQVLLAARGRDAAKRAKDLVKRKDSMSIGTLPGKLADCQSKDPK 414 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR +K+L S EI +ITALG Sbjct: 415 ISEIYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLEKILKSDEIKNMITALGC 474 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D F+ KLRYHKIIIMTDADVDG+HI+TLL+TFFFR + ++ G+LY+ +PPLY Sbjct: 475 GIG-DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRFLQPVVEKGYLYLAQPPLYR 533 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +GK+ Y+KD+++L D+LI +S + +NDL + +K+ Sbjct: 534 YKKGKNETYLKDDKALNDFLIENGISVIESHT------MGENDLVDLFKLVAYYKMTLKE 587 Query: 604 FYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN 658 + IE I G N E + + + N LN + + N Sbjct: 588 IEKRFALPEVLRYMIENPDIIGTSNKELAKTLEKYIKKLGYNILNKTITEDRLHYFVQTN 647 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 + E+ +++ + +I+E+ D+ K Sbjct: 648 DG-----------LEELIVDEILFTNPHYNEAIHIHQKIQEHIT---------DEFKDKD 687 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +L + + +KG +QRYKGLGEMN QLWETT+ P+ R LL+V+I D+ +A + F+ Sbjct: 688 LLALFAEVEASAKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLLQVRIDDSEEASETFT 747 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR +I+ ++ LD+ Sbjct: 748 LFMGDEVEPRRNYIESHAKDVKHLDV 773 >gi|255323607|ref|ZP_05364737.1| DNA gyrase, B subunit [Campylobacter showae RM3277] gi|255299321|gb|EET78608.1| DNA gyrase, B subunit [Campylobacter showae RM3277] Length = 769 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 361/803 (44%), Positives = 502/803 (62%), Gaps = 41/803 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A++I++LKGL+AV+KRP MYIGDT+ SGLHHMIYEV+DN+IDE++ GY D I + Sbjct: 2 QQNYGAENIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDEAMAGYCDTIDI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GS +SDNGRGIP +H E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 ELTREGSAIISDNGRGIPVGMHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L + IKR+G ++ F GI + L V + N TGT+V F P IF V + Sbjct: 121 VVNALSKKLVVNIKRDGKLHRQEFSKGIPQSDLEVIKNT-NRTGTQVEFWPDDSIFEVTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ + L R REL++LN + I+ D+R+ R+ + Y+GG+E+FV+ D +K + Sbjct: 180 FDDEILTKRFRELAYLNPKITINFKDQRNG--RKESFHYEGGLESFVT--DLNKNEAVSK 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + G +++ +D A+ +ND Y EN+L F NNI DGGTH +G R+ LTR IT+Y+ Sbjct: 236 AVSFSGGEEDVLVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYIAA 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + G+D REG +V+S+K+P+P+F QTK KL SS V+ +V+ V + LS Sbjct: 296 NAAAREKDTKITGEDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFEVLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EA+ I++K L A+ R+AA++ARDLTR+K L I +LPGKLADC +DP SE Sbjct: 356 YFEENPIEARAIMEKALMAARGREAAKKARDLTRKKEGLSIGTLPGKLADCQSKDPTISE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG GIG Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD +LRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ NG +Y+ +PPLY + Sbjct: 476 -DEFDAERLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHKVVENGHIYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y+KDE +L ++LI + I DL +F+ ++K+ Sbjct: 535 GKKEIYLKDERALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKELEK 588 Query: 607 NHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + IE I E + + L ++ N LN + E + + Sbjct: 589 RFSMISAVRYMIENPDIVSKSYGEIYEILKNYLEAQGHNILNSYVSEDEARIYVQTESG- 647 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 E+ ++ + + + S +I+E + GD I + Sbjct: 648 ----------LEELLVNENLFTNPLYEEALYISQKIKER-----GIELKGDVIDV----- 687 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 LD I +KG +QRYKGLGEMN QLWETT+NP+ R LL++ I D A D F+ M Sbjct: 688 -LDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKININDVVSASDTFNLFM 746 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GDEVEPRR +IQE++ LD+ Sbjct: 747 GDEVEPRRNYIQEHAKDVKHLDV 769 >gi|116514952|ref|YP_802581.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256806|gb|ABJ90488.1| DNA gyrase subunit B [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 797 Score = 783 bits (2021), Expect = 0.0, Method: Composition-based stats. Identities = 363/798 (45%), Positives = 506/798 (63%), Gaps = 9/798 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y + +I+ILKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ + I V ++ Sbjct: 5 YTSSNIKILKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGFCNTINVKIH 64 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S ++SDNGRGIP D+H E GISAAEVIMT LHAGGKF++ SYKVSGGLHGVG+SVVN Sbjct: 65 SDNSVSISDNGRGIPIDIHPEAGISAAEVIMTVLHAGGKFDENSYKVSGGLHGVGISVVN 124 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFN 188 ALS LKL I R I + +G L+ G GT++ F P+ IF + +F Sbjct: 125 ALSKKLKLYIYRNSKI-RQIYFHGNPKESLLCIGKTKKQ-GTKIRFWPNEKIFTNQNNFQ 182 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 + LQ RL+ELSFLNS++ I L D R+ KGGI+ F+ +L+ K P+ Sbjct: 183 SEILQKRLQELSFLNSNLLIKLTDMRNK--IYFQYLNKGGIKNFIKFLNNSKIPIHNKIF 240 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + + NI +++AM+WN + E +LCFTNNIPQ+DGG+HLSG R+ALTR + ++ ++ Sbjct: 241 IFKKKKKNIEVNIAMQWNSTFQEKILCFTNNIPQQDGGSHLSGFRAALTRTLNNFSDREK 300 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 +KK+K ++ GDD REG +++SIKM +P+FSSQTKEKLVSSEV+SVVE+ +N+ L +L Sbjct: 301 SNKKNKITITGDDTREGLIALISIKMFNPKFSSQTKEKLVSSEVKSVVETLLNEHLMNFL 360 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 E+P E+K I+ K++ ++ R+AA++AR++TR+KG ++ +L GKL+DC E+DP SE++ Sbjct: 361 LENPKESKPIITKIIQSARSREAAKKAREITRKKGTIESTNLSGKLSDCQEKDPLFSEIY 420 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQGR+R NQAILPL+GKILN+E+AR +K+++S E+ TLIT LG G G++ Sbjct: 421 LVEGDSAGGSAKQGRNRRNQAILPLKGKILNIEKARLEKIINSSELVTLITVLGCGFGKE 480 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 +D+ KLRY+ IIIMTDADVDG HIRTLLLTFFFRQMP +I G +YI +PPLY I GK Sbjct: 481 EYDLKKLRYNYIIIMTDADVDGLHIRTLLLTFFFRQMPEIIKKGHIYIAQPPLYKIKEGK 540 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 +Y+ D L Y + ++ L K + I KI+KL Sbjct: 541 KEKYLTDTNELYKYQYQL-IQKKCYLVYKIKQEKKEETFSKIIFQYNKINKLFLKKKYII 599 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN--NSDILVKR 666 + + + + L L +K S+ N N + ++ Sbjct: 600 PSFIFKIMIYIIPLKNLQKKNKVKNWIKLLIKNLQKKEKKKIYSYQIKKNQKNYEPILNI 659 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + + L+ + + K F +I + N K ++ + Sbjct: 660 SSNNNFYSYHLKNEFLLTKKYKKFIKFILKINFLIQHNAYIKLNNKKFIFNNIDKIITLL 719 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +++QRYKGLGEMN QLW TT+NP TR +L+V + DA AD LFS LMGD VE Sbjct: 720 IKETNDFLNIQRYKGLGEMNPEQLWMTTMNPKTRKMLQVTMNDAKSADQLFSILMGDLVE 779 Query: 787 PRREFIQENSLPS-ALDI 803 PRR FI++N+L + +DI Sbjct: 780 PRRNFIKKNALYAKNIDI 797 >gi|51244501|ref|YP_064385.1| DNA gyrase, subunit B [Desulfotalea psychrophila LSv54] gi|50875538|emb|CAG35378.1| probable DNA gyrase, subunit B [Desulfotalea psychrophila LSv54] Length = 807 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 362/817 (44%), Positives = 522/817 (63%), Gaps = 24/817 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +SY A+ I++L GL+AV+KRPSMYIG+T G GLHH+I+E++DN+IDE+L G+ Sbjct: 1 MTEK---NSYGAEQIKVLDGLEAVRKRPSMYIGNT-GIEGLHHLIWEIVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 +I VT++ TV D+GRGIP D+H E ISA E++MT LHAGGKF+ SYKVSGGL Sbjct: 57 CQLIKVTIHEGNKVTVEDDGRGIPVDIHPVEKISALELVMTTLHAGGKFDHSSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALSS ++ +KR G +Y ++ G + L + G TG+ VTF + Sbjct: 117 HGVGISVVNALSSVAQVIVKRNGKMYRQTYAYGDKTSELEIIGDCE-RTGSIVTFQADPE 175 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYL 236 IF+ ++Y+ +++R+REL+FLN V+I L D+R + E GG+ ++V YL Sbjct: 176 IFTESTVYDYEVVKNRVRELAFLNMGVKIQLKDERSGAEDKFPEEEFKLPGGVISYVQYL 235 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R + ++ PI I G +D + +D+A + DGY E + F NNI ++GG+H++G RSAL Sbjct: 236 NRKRTTIVAEPICIIGEKDGVEVDIAFQHFDGYAERLFSFVNNINTREGGSHVAGFRSAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T+ + Y K + + GDD REG T V+S+++P+P+F QTK KL ++EV+S+V Sbjct: 296 TKCMNRYANDDIIPKNLREKMSGDDIREGLTCVISVRVPNPQFEGQTKTKLGNTEVKSIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ LS +LE++P AK I+ KV++A+ R+AA+RARDL+R+KG + + GKLA+ Sbjct: 356 ESIASEKLSLFLEQNPQVAKKILFKVVEAARAREAAKRARDLSRKKGSTSLL-MAGKLAE 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C E+DP K E+F+VEGDSAGGSAKQGR R QAILPLRGKI+NVE+ARFDK+L S+EI Sbjct: 415 CQEKDPAKREIFIVEGDSAGGSAKQGRDRSIQAILPLRGKIMNVEKARFDKILGSEEIKN 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI ALG+GIG+D FD+ KLRYHK+IIMTDADVDGAHIRTLLLTFF+RQM L+ GF+YI Sbjct: 475 LIAALGSGIGKDDFDVEKLRYHKVIIMTDADVDGAHIRTLLLTFFYRQMLPLVQGGFVYI 534 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + RGK +Y ++ L +L Q+ + + V+ ++L + ++ Sbjct: 535 GQPPLYRLGRGKKEKYFLNDGELNHHLFQQASEAMRIMRVSDQVVVEGSELVSLLEKLSM 594 Query: 597 IDKLIKDFYP-NHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAEKSEKSW 653 + ++ N + + + +G+ + + ++ +L SK++ I W Sbjct: 595 YESIVAFMNRINILEDMLFFLLDNGIRSADQFKDKEFVENLISKISEEEFIIGNIRICHW 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN--- 710 DI V RG + + G I G K + + +L +I + Sbjct: 655 REDCYEVDIAV----RGKVQVMMTLGPEIPLIGEYRKALALFEHVQLFLRGSYIIHHTNK 710 Query: 711 ---GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 +I ++DTI KG +QRYKGLGEMN QLW+TT+NP+ R L++VKI Sbjct: 711 SGVEREIAAETWSDMVDTIRDESFKGSHLQRYKGLGEMNPEQLWDTTMNPENRVLVQVKI 770 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA QADD+F+ LMGD+VEPRREFIQ ++L LDI Sbjct: 771 NDAEQADDMFTTLMGDKVEPRREFIQNHALEVSDLDI 807 >gi|313681133|ref|YP_004058871.1| DNA gyrase subunit b [Sulfuricurvum kujiense DSM 16994] gi|313153993|gb|ADR32671.1| DNA gyrase subunit B [Sulfuricurvum kujiense DSM 16994] Length = 771 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 350/798 (43%), Positives = 487/798 (61%), Gaps = 30/798 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y A +I++LKGL+AV+KRP MYIGDT G GLHH+IYEV+DN+IDE++ G+ D ITVT Sbjct: 2 ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLIYEVVDNSIDEAMAGHCDTITVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +G+ VSDNGRGIPTD+H EGISAA V++T LHAGGKF++ +YKVSGGLHGVGVSV Sbjct: 61 LTKNGTAIVSDNGRGIPTDMHPTEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALSS LK+ I REG +E +F GI PL GT + F P IF+ Sbjct: 121 VNALSSDLKMTIHREGQSFEQNFKCGIPQEPLA-ITGTTRKRGTTIEFFPDPSIFTETII 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YD L R REL++LN + I D+R+ +GGI FV+ D +KK ++ S Sbjct: 180 FDYDYLAKRFRELAYLNPRITIIFKDERNGASNTYHF--EGGISQFVT--DVNKKTVVAS 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 P ++I +D+A+ +ND Y + F NNI +GGTH +G R+ LTR I++Y ++ Sbjct: 236 PFAFSEKIEDIEMDIAIMYNDSYDDKTFTFVNNINTPNGGTHEAGFRAGLTRVISNYNKQ 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +K+ + G+D EG V+S+++P+P+F QTK KL ++ VR +V+ + L+ Sbjct: 296 NGNAKEKDVPLTGEDVSEGLICVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKVTYEKLTK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+PL+AK IV+K L A+ R+AA++AR+LTRRK + + +LPGKLADC +DP SE Sbjct: 356 YFEENPLQAKAIVQKALMAARGREAAKKARELTRRKDAMTVGTLPGKLADCQSKDPAISE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+L S+EI +ITALG GIG Sbjct: 416 LYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITALGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ F+ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +P ++ NG+LY+ +PPLY + Sbjct: 476 EE-FNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYLPKIVENGYLYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y KD+ + +LI + + + NDL +F + Sbjct: 535 GKKEIYFKDDRVMNAFLIENGIEALEAENLN----VGVNDLVSFFKMVDHYRSTLDALER 590 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + V + E+ I++ L F+ + S+++ D+ + Sbjct: 591 RY------ALVELIRYFIENPDLISLPLTEMYTKVEAFLTAQGNNILSKSVSDEDMHLFV 644 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + E+ + S +I++ L + LL I Sbjct: 645 QTKEGLEELHINDELFASPHFAEANYIFQKIQDWNLPLEG-----------DLLELLTQI 693 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +KG +QRYKGLGEMN QLWETT+ P+ R LLR+ I DA A + F+ MGD+VE Sbjct: 694 TDYAKKGSYIQRYKGLGEMNPEQLWETTMTPENRVLLRITIEDAETAGESFNLFMGDDVE 753 Query: 787 PRREFIQENSLPSA-LDI 803 PRR +I+ ++ LDI Sbjct: 754 PRRNYIETHAKDVKHLDI 771 >gi|225874303|ref|YP_002755762.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196] gi|225791292|gb|ACO31382.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196] Length = 870 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 351/862 (40%), Positives = 506/862 (58%), Gaps = 66/862 (7%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S Q ++Y +D+I++L+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L GYA Sbjct: 15 SSQAQKTTYTSDNIKVLEGLEAVRLRPAMYIGST-GEMGLHHLVYEVVDNSVDEALAGYA 73 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHK---EEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 I VT+++D S TV D+GRGIP D E + A +V++T+LHAGGKF+ +YKVSG Sbjct: 74 TRIEVTIHVDNSITVVDDGRGIPVDEKTLDNGEKMPAVQVVLTKLHAGGKFDSSTYKVSG 133 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS + I R+G+ +E + GI + L G GT+V FLP Sbjct: 134 GLHGVGVSCVNALSEEFDVEIWRDGHTWEQDYARGIPISKLRQAG-TSKKRGTKVHFLPD 192 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-----EITMFYKGGIEAFV 233 IF+V ++NYDTL RLREL+FLN ++I L+D+R+ +P+ Y GGI F+ Sbjct: 193 KSIFTVTEYNYDTLAQRLRELAFLNKGLEIVLVDERTADPKTGQPKRNDFKYAGGIAEFI 252 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 ++++ K+ L PI ++G RDN+ +++A+++ND Y E V CF NNI DGGTHLSG + Sbjct: 253 KHINKGKQILHDKPIVMEGLRDNVDMEIALQYNDSYSETVFCFANNINTADGGTHLSGFK 312 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I S ++ K K ++ GDD REG +V+S+K+P P+F QTK KL +S++ Sbjct: 313 TALTRTINSAGQQLGLFKDVKENLSGDDVREGLVAVISVKLPQPQFEGQTKGKL-NSDIA 371 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V++ VN+ L +LE++P AK I+ K ++A+ R+AAR+ARDLTRRKG LD LPGK Sbjct: 372 GTVQALVNEKLGMFLEQNPPVAKRIINKAIEAARAREAARKARDLTRRKGALDGGGLPGK 431 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCSER P + EL+LVEG+SAGG+AKQGR R QAILPL+GKILNVE+AR+DKML +E Sbjct: 432 LADCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEE 491 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +ITALG GIG++ FD KLRY +II+MTDADVDG+HIRTLLLTFFFR M LI G Sbjct: 492 IRAMITALGCGIGKEDFDPAKLRYGRIILMTDADVDGSHIRTLLLTFFFRHMTELIKRGH 551 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPL+ I +GK QY+KDE ++ ++ + + + + L F+ Sbjct: 552 VYIAQPPLFKIKKGKFEQYIKDEREFVRVMVKRASDGMVVRYGATSATLEGAALTKFMGQ 611 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVI----------SGVFNCESDQEINVSLASKLANRLN 643 + + + + E + + +L L Sbjct: 612 LNEYLGFFDKVNKRLRNDEVTGMFARLFAHEGKEPAKRADFEGPADAAPAKLVELHAELE 671 Query: 644 FIAEKSE------KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 I + ++ + + ++ + S ++ I Sbjct: 672 KIQRNYQFKALHQPAFDEEHQTWSLSFVDAQ---GSERRIDWTLASSPETRQMLSKFALI 728 Query: 698 EENYLTILSLI------------------------------CNG-----DKIKITGPCSL 722 E + G + + P L Sbjct: 729 REQLEPPFVVEYASKATAAQTEAEESEAEASDEAEASKPAQKRGARSAAEPVTKQTPQEL 788 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D + G++ +QRYKGLGEM +SQLWETT++P+ R+LL VK+ D ++ + +F+ LMG Sbjct: 789 FDYVVEQGKRDYQVQRYKGLGEMTSSQLWETTMDPERRTLLSVKLEDIAETETIFTTLMG 848 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 ++VE RR+FI++N+L LDI Sbjct: 849 EDVEARRKFIEDNALDVKNLDI 870 >gi|296271548|ref|YP_003654179.1| DNA gyrase subunit B [Arcobacter nitrofigilis DSM 7299] gi|296095723|gb|ADG91673.1| DNA gyrase, B subunit [Arcobacter nitrofigilis DSM 7299] Length = 772 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 340/798 (42%), Positives = 489/798 (61%), Gaps = 28/798 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A +I++LKGL+AV+KRP MYIGDT+ +GLHHM+YEV+DN+IDE++ GY I + Sbjct: 2 SQEYGASNIKVLKGLEAVRKRPGMYIGDTN-TNGLHHMVYEVVDNSIDEAMAGYCKNIKI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D V D+GRGIPT +H+ EGISAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 TMTKDHWIRVEDDGRGIPTAIHEGEGISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS +K+ I REG I+ F GI PL V G + TGT + FL IF V Sbjct: 121 VVNALSKEVKMTIYREGKIHYQEFSKGIPKAPLEVIGDSPRKTGTTIEFLADDSIFEVNT 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 +++ L R RE+++LNS + I+LI++ + + +GGI+ FV D + + Sbjct: 181 YDFAVLAKRFREVAYLNSFISITLINEITKKTEVYHF--EGGIKQFVE--DINTATAVSD 236 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + + D + +D+A+ +ND Y E L F NNI DGGTH +G ++ LTR I Y+ + Sbjct: 237 AVAFNDNVDGVEVDIAVMYNDTYVEKTLSFVNNIRTIDGGTHEAGFKAGLTRSIVKYLNE 296 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +++S+K+P+P+F QTK KL SS V+ + + ++ L Sbjct: 297 NAAAREKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPICQRLTSEQLDK 356 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P +AK I+ K L A+ R+AA++ARD+TR+K + + +LPGKLA+C +DP E Sbjct: 357 YFEENPAQAKAIMDKALMAARGREAAKKARDMTRKKDAMTVGTLPGKLAECQSKDPAIRE 416 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG GIG Sbjct: 417 LYLVEGDSAGGSAKQGRDRVYQAILPLKGKILNVEKSRLDKILKSDEIRNMITALGCGIG 476 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD K+RYHKII MTDADVDG+HI+TLLLTFFFR + +I G+LYI +PPLY + Sbjct: 477 ED-FDEEKIRYHKIIFMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIAQPPLYRYKK 535 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK+ Y+KD+ +L +LI L + NDL + + +++ Sbjct: 536 GKNETYLKDDNALSAFLIENGLESFEFQ------GLGYNDLVDLFKTVSRYRGMLQQLEK 589 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + + +I E+ +N+ + F+ K + + I + Sbjct: 590 RYSLAEVLKHLI------ENSNLVNLDYQALYEEVKGFLEAKGYNILSKRLTDESIQLFV 643 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + E+ +++ S N++ E LT+ + +LD I Sbjct: 644 QTKEGLEELLIDDELFASPYFSEATYIYNKLVERDLTVF---------EGRDLVEILDEI 694 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 ++ +KG +QRYKGLGEMN QLWETT+ P+ R LLRV I DA+ A D F+ MGDEVE Sbjct: 695 ETLAKKGAYIQRYKGLGEMNPEQLWETTMTPEARRLLRVTIDDATVASDTFTLFMGDEVE 754 Query: 787 PRREFIQENSLPSA-LDI 803 PRR +I+E++ LD+ Sbjct: 755 PRRNYIEEHAKDVEHLDV 772 >gi|157736274|ref|YP_001488957.1| DNA gyrase subunit B [Arcobacter butzleri RM4018] gi|315635403|ref|ZP_07890669.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri JV22] gi|157698128|gb|ABV66288.1| DNA gyrase, subunit B [Arcobacter butzleri RM4018] gi|315480161|gb|EFU70828.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Arcobacter butzleri JV22] Length = 773 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 342/800 (42%), Positives = 490/800 (61%), Gaps = 28/800 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y A +I++LKGL+AV+KRP MYIGDT+ +GLHH++YEV+DN+IDE++ G+ I Sbjct: 1 MSQQEYGASNIKVLKGLEAVRKRPGMYIGDTN-INGLHHLVYEVVDNSIDEAMAGFCRNI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DG + D+GRGIPT +H EGISAA V +T LHAGGKF++ +YKVSGGLHGVG Sbjct: 60 KVTLTKDGWARIEDDGRGIPTAIHPTEGISAATVALTVLHAGGKFDKDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LK+ + REG I+ F GI L + G + TGT + FL IF V Sbjct: 120 VSVVNALSKHLKMTVYREGKIHYQEFKEGIPQGTLEIIGDSPRKTGTTIEFLVDDSIFEV 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + ++ L+ R +E+++LN + I+L D+ + +GGI+ FV+ + +K+ + Sbjct: 180 TKYEFNILKKRFKEVAYLNPIISITLEDEAAKLKEVYHF--EGGIKQFVADM--NKETAL 235 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + + +D+AM +ND Y E L F NNI DGGTH +G ++ LTR I+ Y+ Sbjct: 236 CEVISFSDRVEGVEVDIAMMYNDTYIEKTLSFVNNIRTIDGGTHEAGFKAGLTRSISKYL 295 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ +++ + GDD REG +V+S+K+P+P+F QTK KL SS VR + + D L Sbjct: 296 SENAAAREKDTKITGDDVREGLIAVVSVKVPEPQFEGQTKGKLGSSYVRPIAQKLTGDNL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EE+P AK I++K L A+ R+AA++AR+LTR+K + + +LPGKLA+C +DP Sbjct: 356 DKYFEENPTHAKAIMEKALMAARGREAAKKARELTRKKDAMTVGTLPGKLAECQSKDPAI 415 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 EL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG G Sbjct: 416 RELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIRNMITALGCG 475 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FD K+RYHKIIIMTDADVDG+HI+TLLLTFFFR + +I G+LYI +PPLY Sbjct: 476 IGED-FDEEKIRYHKIIIMTDADVDGSHIQTLLLTFFFRFLRPVIEKGYLYIAQPPLYRY 534 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK+ Y+KD +L +LI L + NDL + K +++ Sbjct: 535 KKGKNEIYLKDNNALSAFLIENGLESFEF------EGLGYNDLLDLFKIVSKYRAMLEQL 588 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + + + +I E+ +N+ N +F+ +K ++ + I + Sbjct: 589 GKRYSLLEVLKHLI------ENSDLVNLEFKDLYENIKDFLDKKGYNILSKTVLDDRIQL 642 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 E+ +++ S ++++E L++ + +L+ Sbjct: 643 FVQTNEGLEELIIDEELFASPYFSEATYIYSKLKERDLSVF---------EGRDLIEILE 693 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 I ++ +KG +QRYKGLGEMN QLWETT+ PD R LLRVKI DA A D F+ MGDE Sbjct: 694 EIETLAKKGAYIQRYKGLGEMNPEQLWETTMIPDNRRLLRVKIEDAEVASDTFTLFMGDE 753 Query: 785 VEPRREFIQENSLPSA-LDI 803 VEPRR +I+E++ LD+ Sbjct: 754 VEPRRNYIEEHAKDVEHLDV 773 >gi|189218174|ref|YP_001938816.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4] gi|189185032|gb|ACD82217.1| DNA gyrase subunit B [Methylacidiphilum infernorum V4] Length = 841 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 360/831 (43%), Positives = 502/831 (60%), Gaps = 41/831 (4%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I+ L+GL+AV+KRP MYIG TD E GLHH I+EVLDN+IDE L GY I +T+ Sbjct: 16 SYDASRIEKLEGLEAVRKRPGMYIGPTD-ERGLHHCIFEVLDNSIDEHLAGYCSRIELTI 74 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 ++DGS ++ DNGRGIP D H + I A E+++T LHAGGKF+Q YK SGGLHGVG V Sbjct: 75 HVDGSVSILDNGRGIPVDPHPKFKIPAVELVLTNLHAGGKFSQGVYKYSGGLHGVGAKCV 134 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DF 187 NALS W K+ + R+G +Y M F G PL V G TGT +TF P +IF+ +F Sbjct: 135 NALSEWFKVEVFRDGKVYRMEFRRGKTSKPLEVVGKT-LKTGTLITFKPDPEIFTQTLEF 193 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + + RLREL+FLN ++I L+D+R +P + F+K GI FVS + KPL Sbjct: 194 KTEIIAKRLRELAFLNPGLEILLLDERQLDGSKPSSLRFFFKEGIAEFVSQFTQDLKPLC 253 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI IQ +D++ +D +++ +GY E + C+TN IP DGG+HLSGLR+ALTR I Y Sbjct: 254 PRPIVIQKQKDDLIVDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLRTALTRSINQYG 313 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K+ + G+D REG +LS+K P P F SQTK KLVS EV VV S V +GL Sbjct: 314 KANNLFKEKDPPLSGEDVREGLVCILSLKHPSPSFESQTKVKLVSPEVEGVVSSLVYEGL 373 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE +P AK IV+K L A+ R+AA++AR+ RK L LPGKLADCS R+P++ Sbjct: 374 MNYLELNPQVAKRIVEKALTAARAREAAKKAREAV-RKTALSGGGLPGKLADCSVRNPQE 432 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +ELF+VEGDSAGGSAKQGR+R+ QAILP+RGK++NVE+AR DK+L+++EI T+ITA+GTG Sbjct: 433 AELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKARLDKVLNNEEIQTIITAVGTG 492 Query: 485 I----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 I G+ SF + +LRYHKII+MTDADVDG+HIRTLLLTFF+RQMP LI+ G +YI +PP Sbjct: 493 IGDGDGEGSFLLERLRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELINKGHVYIAQPP 552 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I + K YV+++E L L+ Q + +++ V +L + K+ + Sbjct: 553 LYLIGKKKEEYYVQNDEELNKILLEQGVKNVELFRANAEKVFRGRELFGILSKLEKLSQF 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 K + + + + E V + RL F ++ + N Sbjct: 613 CKYLELHGIDFDL--LLANKDPQTGKLPEHIVRVWENNQERLYFFFDERQLGHFAEENPD 670 Query: 661 DILVKRIARGV------------QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL- 707 +L + R + S + F S + + I Sbjct: 671 LLLFETPGRESLPPTGGELQADEERPRARRASYLELFESPMVMKILEELLQLGFEISRYK 730 Query: 708 ----------ICNGDK----IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 + G+K + I +L+ + G++G+ ++R+KGLGEMN QL+ET Sbjct: 731 SKDVPLYKMIVKKGEKGEKQLDIFSIGQILEVVKENGKEGVEIKRFKGLGEMNPKQLYET 790 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 T++P R LL+V+I DA +A+ +F LMG+EVEPR+ FI+EN+L LD+ Sbjct: 791 TMDPQKRKLLKVEIADAIEAERVFVTLMGEEVEPRKRFIEENALHVRNLDV 841 >gi|32266626|ref|NP_860658.1| DNA gyrase subunit B [Helicobacter hepaticus ATCC 51449] gi|32262677|gb|AAP77724.1| DNA gyrase (topoisomerase II) [Helicobacter hepaticus ATCC 51449] Length = 772 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 347/805 (43%), Positives = 494/805 (61%), Gaps = 39/805 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ GY D I Sbjct: 1 MEKKEYQASNIKVLKGLEAVRKRPGMYIGDTNSG-GLHHMIYEVVDNSIDEAMAGYCDKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +TL M+GS + DNGRGIP D+H E + AA +++T LHAGGKF+Q +YKVSGGLHGVG Sbjct: 60 NITLTMEGSAIIEDNGRGIPVDIHPTENLPAATLVLTTLHAGGKFDQDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L + IK+ G+IY F GI + L V G+ GT + F P ++ V Sbjct: 120 VSVVNALSKRLIMTIKKNGHIYRQEFAKGIPQSDLEVIGNTK-KHGTTIEFFPDGEVMEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ D L R +E+++LN ++ I D+R+ +GG++ F+ D +KKPL+ Sbjct: 179 LEFDKDILVRRFKEMAYLNHNITIQFKDERTQFEEIYHF--EGGLKQFIQ--DVNKKPLI 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + + I++A+ +N+GY E +L F NNI DGGTH +G R+ L+R I +Y+ Sbjct: 235 SSIISFEATEQESEIEIALAYNEGYDEKLLSFVNNIRTPDGGTHEAGFRAGLSRAIMNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ V G+D REG +++S K+ DP+F QTK KL SS V+ +V+ + L Sbjct: 295 EANANAREKDAKVSGEDVREGLVAIISTKIIDPQFEGQTKGKLGSSFVKPIVQKLTYEKL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P EAK I++K + A+ R+AA++ARDLTR+K + +LPGKLADC +DP Sbjct: 355 SKFFEENPNEAKAIMQKAIMAARGREAAKKARDLTRKKESFSVGTLPGKLADCQSKDPSV 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S EI +ITA G G Sbjct: 415 SEIYLVEGDSAGGSAKQGRDRTFQAILPLRGKILNVEKSRLDKILKSDEIKNMITAFGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + L+ NG +YI +PPLY Sbjct: 475 IGEE-FNIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLVENGHIYIAQPPLYRY 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE +L +YLI + + +L + ++K+ Sbjct: 534 KKGKKEIYLKDERALSEYLIENGIENFKF------EGVGNRELLEILKFISHYRSILKEL 587 Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + +E + Q I L SK N LN + + + Sbjct: 588 EKRYPMIEVVRYLVENEQFDTLELKALSQNIESYLISKECNILNKTTAQEQIT------- 640 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 L + G+ E + + + +F + + I+ ++ L + + D I Sbjct: 641 ---LYVQTKVGLVELSINDTLFMDNFFQEARFIY----KKIADRDLGFLNDEDMIV---- 689 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L+ I +K +QRYKGLGEMN QLWETT+ P R+LLRVKI + D++F+ Sbjct: 690 --FLERIEESAKKDAYIQRYKGLGEMNPDQLWETTMIPQNRTLLRVKIDNDINTDEIFTL 747 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR +IQE++ LD+ Sbjct: 748 FMGDEVEPRRAYIQEHAKDVKHLDV 772 >gi|154173892|ref|YP_001407307.1| DNA gyrase subunit B [Campylobacter curvus 525.92] gi|112803527|gb|EAU00871.1| DNA gyrase, B subunit [Campylobacter curvus 525.92] Length = 770 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 358/805 (44%), Positives = 494/805 (61%), Gaps = 41/805 (5%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ YDA +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ GY D I Sbjct: 1 MEEKHYDAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVVDNSIDEAMAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + + +GSC V+DNGRGIP D+H E + AA V++T LHAGGKF++ +YKVSGGLHGVG Sbjct: 60 DIEITNEGSCIVTDNGRGIPVDMHPTEHLPAATVVLTVLHAGGKFDKDTYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L L IKR+GN+Y F GI L N TGT+V F IF V Sbjct: 120 VSVVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETI-KTTNRTGTQVEFFVDDSIFEV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R REL++LN + I+ D+R +GG+E+FV+ + +K + Sbjct: 179 TEFDREILAKRFRELAYLNPKITINFKDQRDGFNESYHF--EGGLESFVTDM--NKAQAV 234 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + G +++ +D A+ +ND Y EN+L F NNI DGGTH +G R+ LTR IT+Y+ Sbjct: 235 SKAVSFSGGEEDVMVDFALMYNDTYSENLLSFVNNIKTPDGGTHEAGFRAGLTRVITNYI 294 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + ++ + GDD REG +V+S+K+P+P+F QTK KL SS V+ +V+ V D L Sbjct: 295 AANAAVREKDTKITGDDIREGLIAVISVKVPEPQFEGQTKGKLGSSYVKPIVQKMVFDVL 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P+EA+ I+ K L A+ R+AA++ARDLTR+K L + +LPGKLADC +D Sbjct: 355 SKYFEENPIEARAIMNKALMAARGREAAKKARDLTRKKEGLSVGTLPGKLADCQSKDATI 414 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE++R DK+L S EI +ITALG G Sbjct: 415 SELYLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSRLDKILKSDEIKNMITALGCG 474 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FD KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ NG++Y+ +PPLY Sbjct: 475 IG-DEFDAEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLHQVVDNGYIYLAQPPLYRY 533 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE++L ++LI + I DL +F+ ++K+ Sbjct: 534 KKGKKEIYLKDEKALNEFLIETGIEGVEF------EGIGNADLIDFLKIVAAYRSVLKEL 587 Query: 605 YPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + IE I E + + L + N LN +N+ Sbjct: 588 EKRFNVLSAIRYMIENPDIVSKSYPEIFEILKAYLKGQGHNILNSY-----------VND 636 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 +I + E+F++ + + + +I+E + Sbjct: 637 DEIRIYVQTESGLEEFIVNEGLFTNPLYEEAVYINQKIKEREINFK-----------KDV 685 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +LD I +KG +QRYKGLGEMN QLWETT+NP+ R LL++ I DA A D F+ Sbjct: 686 IEILDEIEKNAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLLKINIEDAISASDTFNL 745 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRR +IQ+++ LDI Sbjct: 746 FMGDEVEPRRNYIQDHAKDVKHLDI 770 >gi|254442695|ref|ZP_05056171.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235] gi|198257003|gb|EDY81311.1| DNA gyrase, B subunit [Verrucomicrobiae bacterium DG1235] Length = 839 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 330/832 (39%), Positives = 487/832 (58%), Gaps = 44/832 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +S Y+A +IQ L+GL+ V+KRP MYIGDT+ E GLHH ++EV+DN+IDE+L Y I V Sbjct: 17 DSDYNASNIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEVVDNSIDEALASYCKNIKV 75 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++++DGSC++ D+GRGIP D+H + I A E+++T LHAGGKF + +Y+VSGGLHGVG Sbjct: 76 SIHLDGSCSIEDDGRGIPVDIHPKYNIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAK 135 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VNA+S W + ++R+G I++M F G+ L + G TGT+++F P +IF Sbjct: 136 CVNAVSEWFEAEVRRDGKIHQMQFSKGLTTKSLTIIGDT-QKTGTKISFKPDPEIFQTTL 194 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L RLREL+FLN + ISLID+RS + + + GI ++ +L+R K L + Sbjct: 195 TFQYEILGKRLRELAFLNPGISISLIDERSNKE--ESFLFVDGIAEYIRFLNRSKNVLHE 252 Query: 246 SPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 PI I +D+++++ND Y++ + + N+I +GGTHL+G R+ALTR Sbjct: 253 DPISFSDSVKTNEDAPPIGVDVSLQYNDSYNDQIFAYANSIFNIEGGTHLTGFRTALTRV 312 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + + K ++ GDD REG +V+S+K+P+PRF QTK KL + EV +V+ Sbjct: 313 VNQFARANNLLKDKDPAITGDDAREGLVAVVSVKVPEPRFEGQTKTKLSNGEVDGIVQKI 372 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L E P AK ++ + A R T RK L LPGKLADCS Sbjct: 373 VGERLKYHFETDPKLAKRLID-KCLNAARAREAARKARETVRKSALSGGGLPGKLADCSS 431 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R P++SE+++VEGDSAGGSAKQGR R QAILPLRGK++N E+AR DK+LS+ EI T+IT Sbjct: 432 RKPEESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKLINSEKARIDKVLSNNEIRTMIT 491 Query: 480 ALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 A+GTGIG F+I K RYHKIIIMTDADVDG+HI TLLLTF +R M LI G++Y Sbjct: 492 AIGTGIGDSEDGGGFNIEKARYHKIIIMTDADVDGSHISTLLLTFLYRHMKGLIERGYVY 551 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY I R + QY+ ++E L L+ E + D L ++ Sbjct: 552 MAQPPLYKIKRKRREQYIDNDEQLNRILLELGGDESVLTRVDDGHKFEGEKLDKIVEVFA 611 Query: 596 KIDKLIKDFYPNHDK--TFIEQ------AVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +++++ + ++EQ ++ + + ++R F+ Sbjct: 612 QLERIGGSVTRHGGSLAEYLEQYSKENHSLPRYLARVREGNNETYHFLREESDRAAFVQN 671 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + + N+ + A G+ ++ + F S + IE L + Sbjct: 672 QGMGAEGLNEENATATIFDEAAGISKRISI----FEIFESNEMSKLLHEIENIGLNLSQF 727 Query: 708 ICNGD---------------KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWE 752 + + + I+I S+LD I GRKG+S+QRYKGLGEMN QL+E Sbjct: 728 VTSEEPVYTFTENLGSKSENTIEIFSNMSILDEIRKSGRKGLSIQRYKGLGEMNPKQLYE 787 Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 TT++ R LL+V I DA++AD+LF+ LMG+EV PRR FI++N+L + LD+ Sbjct: 788 TTMDVSKRRLLKVNINDAAKADELFTILMGEEVAPRRLFIEDNALNVSYLDV 839 >gi|154148768|ref|YP_001405626.1| DNA gyrase subunit B [Campylobacter hominis ATCC BAA-381] gi|153804777|gb|ABS51784.1| DNA gyrase, B subunit [Campylobacter hominis ATCC BAA-381] Length = 768 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 342/796 (42%), Positives = 501/796 (62%), Gaps = 30/796 (3%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A +I++LKGL+AV+KRP MYIGDT+ GLHHMIYEV+DN+IDE++ GY D + + L Sbjct: 2 EYGAGNIKVLKGLEAVRKRPGMYIGDTNIG-GLHHMIYEVIDNSIDEAMAGYCDTVNIRL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 +GS ++DNGRGIPTD+H E I AA V++T LHAGGKF++ +YKVSGGLHGVGVSVV Sbjct: 61 TKEGSAVITDNGRGIPTDIHPTEKIPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS L IKR G IY F GI N L + G +TGT++ F P S+IF + +F+ Sbjct: 121 NALSVRLIATIKRNGKIYRQEFSKGIPVNNLEIIGDTE-ETGTQIEFWPDSEIFEILEFD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 + L R +EL++LN + I+ D+R+ R+ ++GG+E+FV+ L+ +++ ++ + Sbjct: 180 DEILSKRFKELAYLNPKITINFKDERTG--RDECFHFEGGLESFVTDLNHNRQ-IVSKSV 236 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + D++++D A+ +N+ Y EN+L F NNI +GGTH +G R+ LTR IT+Y+ + Sbjct: 237 SFSDTIDDVAVDFALLYNETYSENLLSFVNNIHTPEGGTHEAGFRAGLTRAITTYINANA 296 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 +K+ + GDD REG +++S+K+P+P+F QTK KL SS V+ +V+ D LS + Sbjct: 297 SAKEKDTKITGDDVREGLIAIISVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLSKYF 356 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE+P+EAK ++ K L A+ R+AA++ARDLTR+K + +LPGKLADC +D SE++ Sbjct: 357 EENPIEAKAVMNKALLAARGREAAKKARDLTRKKESFGVGTLPGKLADCQSKDASISEIY 416 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQGR R QAILPLRGKILNVE+A +K+L S+EI +ITA G G+G + Sbjct: 417 LVEGDSAGGSAKQGRDRVFQAILPLRGKILNVEKAYLEKILRSEEIKNMITAFGCGVGSE 476 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FD KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + ++ G++Y+ +PPL+ +GK Sbjct: 477 -FDEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLKPIVEKGYVYLAQPPLFRYKKGK 535 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 Y+KDE++L ++LI + I +NDL +F+ ++ + Sbjct: 536 KEIYLKDEKALSEFLIQTGIEVGEF------EGIGENDLIDFLKIVSSYRSILNELKKRF 589 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA 668 + + + E+++ ++S I + + + +N + IL+ Sbjct: 590 ------SLISAVRYLVENEEARSMSYNELFEVLKTKIEDLNFNILNSRVNENGILIYVQT 643 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728 E+ ++ S + + +I++ L +LD I Sbjct: 644 PNGLERLKIDDSLFTNNLFEEAVYLYGKIKDRNLDFK-----------KDFIEILDDIEK 692 Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788 +KG +QRYKGLGEMN QLWETT+NP+ R L+++ I+DA A D F+ MGDEVEPR Sbjct: 693 NAKKGAYIQRYKGLGEMNPEQLWETTMNPENRRLVKISISDAESASDTFNLFMGDEVEPR 752 Query: 789 REFIQENSLPSA-LDI 803 R++IQ ++ LDI Sbjct: 753 RDYIQTHAKDVKHLDI 768 >gi|320108482|ref|YP_004184072.1| DNA gyrase subunit B [Terriglobus saanensis SP1PR4] gi|319927003|gb|ADV84078.1| DNA gyrase, B subunit [Terriglobus saanensis SP1PR4] Length = 877 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 354/862 (41%), Positives = 506/862 (58%), Gaps = 67/862 (7%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++Q ++Y +D+I+IL+GL+AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L G+A Sbjct: 22 QSVQTTTYTSDNIKILEGLEAVRLRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGHAT 80 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLH---KEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 I VT+++D S TV D+GRGIP D+ ++A EV++T+LHAGGKF+ SYKVSGG Sbjct: 81 RIDVTIHVDNSVTVVDDGRGIPVDMKTLPDGSKMAAVEVVLTKLHAGGKFDASSYKVSGG 140 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS + I R+G+ Y+ ++ G + G + GT+V FLP Sbjct: 141 LHGVGVSCVNALSEEFDVEIWRDGHTYQQNYSKGDPLEAVREVGVSK-KRGTKVHFLPDR 199 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF+V ++NYDTL +RLR+L+FLN ++I+L D+RS E + Y GGI F+ + Sbjct: 200 SIFTVHEYNYDTLANRLRQLAFLNKGIEITLTDERSIDAKGEAKHNDFKYNGGIAEFIKH 259 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L++ K L + PI ++ R + +++A+++ND Y E V F NNI DGGTHLSG R++ Sbjct: 260 LNKGKAVLHEKPIYMEAERGQLVMEIALQYNDAYSETVFSFANNINTVDGGTHLSGFRTS 319 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I + + K K S+ GDD REG +V+S+K+P P+F QTK KL +S++ Sbjct: 320 LTRTINAAGQSMGLFKDLKESLSGDDVREGLVAVVSVKLPQPQFEGQTKGKL-NSDISGQ 378 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+SFVN+ L + E++P AK I+ K +DA+ R+AAR+ARDLTRRKG LD LPGKLA Sbjct: 379 VQSFVNERLGVFFEQNPQVAKKIINKAIDAARAREAARKARDLTRRKGALDGGGLPGKLA 438 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSER P + EL+LVEG+SAGG+AKQGR R QAILPL+GKILNVE+AR+DKML +EI Sbjct: 439 DCSERQPDRCELYLVEGESAGGTAKQGRDRRFQAILPLKGKILNVEKARYDKMLGHEEIR 498 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +ITALGTGIG+D FD+ KLRY K+I+MTDADVDG+HIRTLLLTFFFR M LI G +Y Sbjct: 499 AMITALGTGIGKDDFDLAKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMGELIKRGHVY 558 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPL+ I +GK +Y+KDE ++ ++ I + +S + +L F+ Sbjct: 559 IAQPPLFKIKKGKREEYIKDEREFVKVMVKRASDGMIVRYGESAATLEGAELTKFMGHLN 618 Query: 596 KIDKLIKDFYPNHDKT-----FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK-- 648 + F E G +++ +L +A Sbjct: 619 EYLGFYDKADKRFRNDAVTTMFAEIFANEGKEPARRADFETPDKLNQMQAKLKAMAHDAK 678 Query: 649 ----SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 E + ++G Q ++ + + + +I E Sbjct: 679 FKAVGEPVLDEEHQTWSLSYSD-SQGAPRQ--IDFTMASAPEMRQMLGKYAQIREQLQPP 735 Query: 705 LSL------------------------------------------ICNGDKIKITGPCSL 722 + + D ++ L Sbjct: 736 FYVSYADKTAKQDADDAEEAAETEVAADATAPGTVAEVKGKQRNNRASQDPVQRNSAREL 795 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D + G+K +QRYKGLGEM A QLWETT++P R+L+ VK+ D + +++F+ LMG Sbjct: 796 FDYVIEQGKKEYQVQRYKGLGEMTAEQLWETTMDPARRTLVIVKLEDIAATEEIFTTLMG 855 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 ++VE RR+FI+EN+L LDI Sbjct: 856 EDVEARRKFIEENALDVKNLDI 877 >gi|294054231|ref|YP_003547889.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221] gi|293613564|gb|ADE53719.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221] Length = 846 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 332/836 (39%), Positives = 480/836 (57%), Gaps = 41/836 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N Q YD+ IQ L+GL+ V+KRP MYIGDT+ E GLHH ++E++DN+IDE+L G+ Sbjct: 17 KNAQPDVYDSSKIQKLEGLEGVRKRPDMYIGDTN-ERGLHHCVFEIVDNSIDEALAGHCS 75 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ITV+++ DGSC++ D+GRGIP D+H + I A E++MT LHAGGKF + +Y+VSGGLHG Sbjct: 76 QITVSIHNDGSCSIEDDGRGIPVDIHPKYQIPALELVMTNLHAGGKFGKGAYQVSGGLHG 135 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG VNA+S W ++ ++R+G +++M F G+ + + G TGT + F P IF Sbjct: 136 VGAKCVNAVSEWFEVEVRRDGKVHKMEFSRGLTTQKMKIIGETK-RTGTRIAFSPDPQIF 194 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F Y+ L RLREL+FLN ++I D+R + +K GI +VS+L+ +K Sbjct: 195 EATREFKYELLGKRLRELAFLNPGIKIIFTDERVSKT--EEFIFKDGIAEYVSFLNENKN 252 Query: 242 PLMQSPIRIQGS--------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 + PI G NI +D+A ++NDGY + + + N+I +GGTHLSG R Sbjct: 253 IIHPDPISFHGEAPTPNPDLDANIVVDIAFQYNDGYSDQIYSYANSIHNIEGGTHLSGFR 312 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y +++ K ++ GDD REG T+V+S+K+P+PRF QTK KL + EV Sbjct: 313 TALTRVINAYAKQNGLLKDKDPNLSGDDAREGLTAVISVKVPEPRFEGQTKTKLSNGEVD 372 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V+ + L + E +P AK ++ + A R T RKG L LPGK Sbjct: 373 GIVQKITGEELKFYFETNPQVAKKLID-KCLNAARAREAARKARETVRKGALSTGGLPGK 431 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP SEL++VEGDSAGGSAKQGR R QAILP+RGK+LNVE+AR DK+L + E Sbjct: 432 LADCSSKDPSVSELYIVEGDSAGGSAKQGRDRATQAILPIRGKLLNVEKARLDKVLGNNE 491 Query: 474 IGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I +LITA+GTGIG FD++K RYHKII+MTDADVDGAHI TLLLTF FRQM LI Sbjct: 492 IRSLITAVGTGIGDHEGDGAFDVSKARYHKIILMTDADVDGAHIMTLLLTFLFRQMKGLI 551 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI +PPLY I R + QYV ++ L L+ + + + +S + Sbjct: 552 EAGYVYIAQPPLYKIKRKRREQYVDNDPQLNRILLELGSEDVNLVRLRDQKDLSGEKIDE 611 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 ++ +++ +I + F E + I + + Sbjct: 612 LVESLSRLE-MIGRGVTRYGCDFATYLDQHTDGTYELPRYIVRVRTGNEEEFHFLKDDDA 670 Query: 650 EKSWHGS--INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 +H + + DI + V ++ + I + + E + + Sbjct: 671 RIEFHSEFGVGDEDISGTVVREHVTDEGIKLQQRISLHEIFESTEMTKLLNELASAGMDV 730 Query: 708 -------------------ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + I++ L+D I +IGR+G+S+QRYKGLGEMN Sbjct: 731 HQFSKSEEARYHLVEHKGDEKKENTIELHSIIELVDNIRAIGRRGLSIQRYKGLGEMNPK 790 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 QL+ETT++P +R LL+V I DA+ AD +FS LMG++V RR FI++N+L + LD+ Sbjct: 791 QLFETTMDPKSRRLLKVDIADAAAADGIFSMLMGEDVPSRRAFIEDNALNVSHLDV 846 >gi|322436978|ref|YP_004219190.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9] gi|321164705|gb|ADW70410.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9] Length = 898 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 363/878 (41%), Positives = 520/878 (59%), Gaps = 79/878 (8%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + + Y A++I +L+GL AV+KRP+MYIG T GE GLHH++YEV+DN++DE+L GYA Sbjct: 24 TDAAKAAGYSAENITVLEGLAAVRKRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGYA 82 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI--SAAEVIMTRLHAGGKFNQKSYKVSGG 119 I VT+++D S TV D+GRGIP D G+ A +V++T LHAGGKF+ +YKVSGG Sbjct: 83 SRIDVTIHVDNSITVVDDGRGIPVDNKVINGVTMPAVQVVLTILHAGGKFDASNYKVSGG 142 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS + I R+G +EM + G + L G + GT+V FLP Sbjct: 143 LHGVGVSCVNALSEAFDVEIWRDGFAWEMDYAAGDPISELRKMGPSTRK-GTKVHFLPDK 201 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVS 234 IFSV ++NYDTL +RLR+L+FLN ++I+L D+R + E + + Y GGI F+ Sbjct: 202 TIFSVTEYNYDTLANRLRQLAFLNKGIEITLTDERQTETKTGEAKTQSFKYLGGIAEFIK 261 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ K L + PI ++ RDN+++++AM++ND Y E V F NNI DGGTHLSG ++ Sbjct: 262 LINKGKAVLHEKPIYMEAERDNVAMEIAMQYNDAYSETVFTFANNINTVDGGTHLSGFKT 321 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I + + K K ++ GDD REG V+S+K+ P+F QTK KL +S++ Sbjct: 322 ALTRTINAAGQSLGLFKDVKENLSGDDVREGLVVVISVKLSQPQFEGQTKGKL-NSDIAG 380 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V++FVN+ L A+LE++P AK I+ K +DA+ R+AAR+ARDLTRRKG LD LPGKL Sbjct: 381 TVQAFVNERLGAFLEQNPQVAKKIINKAIDAARAREAARKARDLTRRKGALDGGGLPGKL 440 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCSER P + EL+LVEG+SAGG+AKQGR R+ QAILPL+GKILNVE+AR+DKML +EI Sbjct: 441 ADCSERQPDRCELYLVEGESAGGTAKQGRDRKFQAILPLKGKILNVEKARYDKMLGHEEI 500 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +ITALG GIG+D FD++KLRY K+I+MTDADVDG+HIRTLLLTFFFR M LI G + Sbjct: 501 RAMITALGCGIGKDDFDVSKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMTELIKRGHV 560 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPL+ I +GK QY+KDE + ++ ++ + + I DL FI Sbjct: 561 YIAQPPLFRIKKGKFEQYIKDEREYVNVMVKRASDGMVITHGEGGARIEGADLTEFIGRL 620 Query: 595 LKIDKLIKDFYPN-----HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA--- 646 + + + F E G + + + + ++ +L +A Sbjct: 621 NEYLGFLDKVNKRLRNEDVTRAFTELFAHGGATPAKKEDFQSPAKLEEMKTKLQALAHEA 680 Query: 647 ----------EKSEKSWHGSINNSDILVKRIA--------------RGVQEQFVLEGSSI 682 ++ ++W S ++ ++I + Q + L+G Sbjct: 681 QFRAVGEPVLDEEHQTWSVSFTDAQGAERKIDWALANAAESRQLLGKYAQIESQLKGPFH 740 Query: 683 FSFGSKY------------------------------------KRIFSNRIEENYLTILS 706 S+ +K E S Sbjct: 741 ISYAAKAAVPTPAAGSAEEAEATSQAEMDEADEVAQEEGINETIAAAPGTAAETKPGKRS 800 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + D ++ P + + + GRK +QRYKGLGEM A QLWETT++P+ R+L++VK Sbjct: 801 NRASQDPVEKKTPREVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWETTMDPERRTLMQVK 860 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + +++F+ LMG++VE RR FI+EN+L LDI Sbjct: 861 LEDIAATEEIFTTLMGEDVESRRRFIEENALDVKNLDI 898 >gi|262277739|ref|ZP_06055532.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114] gi|262224842|gb|EEY75301.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114] Length = 834 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 387/841 (46%), Positives = 527/841 (62%), Gaps = 45/841 (5%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + Y ADSI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G Sbjct: 1 MSTAITKKTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAG 60 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N D S +VSDNGRGIP ++HK E ISAAEVIMT+LHAGGKF+ K+YKVSGG Sbjct: 61 HCDTIVVKINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS LK+ I R+G Y + F NGI PL G + + GT VTFLPSS Sbjct: 121 LHGVGVSVVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKS-DLKGTNVTFLPSS 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY---- 235 +IF+ FN L+ RL+EL++LN + I L D+R + + + + GGI+ FV Sbjct: 180 EIFTDTKFNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKL 239 Query: 236 ----LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 + + ++ P+ Q ++++I ++ A+ WN Y+ENVLCFTNNIPQKDGGTHL G Sbjct: 240 KNKIKNEDSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVLCFTNNIPQKDGGTHLLG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+++TR I Y KKDK +++GDD REG VLS+K+PDP+FSSQTKEKLVSSE Sbjct: 300 FRNSITRLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSE 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR VVE+ N+ +S W +++P AK I+ K++ A++ R+ AR+AR+ RRK +DI SLP Sbjct: 360 VRPVVETITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE---------- 461 GKLADC D K+ELF+VEGDSAGGSAKQ R+RE QA+LPLRGKILN Sbjct: 420 GKLADCQSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDV 479 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 + F KMLSS EI TLI A+GTG+ + F++ KLRY KI+IMTDADVDG+HIRTLLLTFF Sbjct: 480 KKVFSKMLSSNEIVTLINAIGTGV--EPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFF 537 Query: 522 -FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 + LI G +YI +PPLY I GK++ Y+K+E LE I SL + + + Sbjct: 538 NNKPFNELIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNK 597 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC---------ESDQEIN 631 + + FI + ++ KLIK + DK +EQ I G F + + + Sbjct: 598 KFNYDK--TFIVQSYELYKLIKSI--DGDKEILEQLSIVGAFTKKDNIILITEDKNNQKK 653 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691 + +A LN EK + W G N +++R + L+ + + + Sbjct: 654 LGAIKAVAENLNQNLEKDDSKWQGLFENDSFVLRREFYHELIEKRLDINFLSNNKVLTNL 713 Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751 N+I + + + K+ ++ I IG+K +S+QR+KGLGEMN +LW Sbjct: 714 SKFNKIANIFQSSCVIKDGDVPHKVNSLIEFIEIIIEIGKKNLSLQRFKGLGEMNPDELW 773 Query: 752 ETTLNPDTRSLLRVKITDASQ--------ADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 ETTLNP+ SLL+V ++ + D++F LMG++V R+ FI N++ LD Sbjct: 774 ETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMGEDVSKRKNFINSNAINVSNLD 833 Query: 803 I 803 I Sbjct: 834 I 834 >gi|118474635|ref|YP_891213.1| DNA gyrase subunit B [Campylobacter fetus subsp. fetus 82-40] gi|118413861|gb|ABK82281.1| DNA gyrase, B subunit [Campylobacter fetus subsp. fetus 82-40] Length = 773 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 350/799 (43%), Positives = 498/799 (62%), Gaps = 32/799 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y A +I++LKGL+AV+KRP MYIGDT+ SGLHHMIYEV+DN+IDES+ GY D I + Sbjct: 5 EKNYGAGNIKVLKGLEAVRKRPGMYIGDTN-ISGLHHMIYEVVDNSIDESMAGYCDTINI 63 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L +GSC V+DNGRGIP D+H E ISAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 64 ELTREGSCIVTDNGRGIPVDIHPTEKISAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 123 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L L IKR+GN+Y F GI N L N TGT V F P DIF V + Sbjct: 124 VVNALSKKLILNIKRDGNLYRQEFSKGIPQNILEAV-KTTNRTGTSVEFWPDDDIFEVTE 182 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ L R +EL++LN +I++ K + T ++GG+E+FV+ D +K + Sbjct: 183 FDKQILSKRFKELAYLNP--RITINFKDQRDGFSETYHFEGGLESFVT--DINKSNPVSK 238 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + G +++ +D A+ +N+ Y EN+L F NNI DGGTH +G R+ LTR IT+Y+ Sbjct: 239 AVSFSGGEEDVIVDFALLYNETYTENLLSFVNNIKTPDGGTHEAGFRAGLTRAITNYIAA 298 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +++ + GDD REG +++S+K+P+P+F QTK KL SS V+ +V+ D L Sbjct: 299 NAAAREKDTKITGDDIREGLIAIVSVKVPEPQFEGQTKGKLGSSYVKPIVQKMTFDVLCK 358 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDPKKS 425 + EE+P+EAK I+ K L A+ R+AA++ARDLTR+K L+ PGKLADC +DP +S Sbjct: 359 YFEENPIEAKAIMNKALMAARGREAAKKARDLTRKKDSLNSVGTLPGKLADCQSKDPSES 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S+EI +ITA G GI Sbjct: 419 EIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKSRLDKILKSEEIKNMITAFGCGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ FD KLRYHKIIIMTDADVDG+HI+TLLLTFFFR + +I NG++Y+ +PPLY Sbjct: 479 GEE-FDPEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFLTPIIENGYVYLAQPPLYRYK 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK Y+KDE++L ++LI + E + DL +++ ++ D Sbjct: 538 KGKKEIYLKDEKALNEFLIETGIEGEDF------EGVGNKDLIDYLKIIAAYRSILMDLK 591 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + + + +I E+ I + + ++ + +N +I + Sbjct: 592 KRFNVLIVIRYMI------ENPDVIAKNYNELFEIIKKKLEDEKFNILNSYVNEDEIRIY 645 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 E+ V+ + + + +++E + + P +L+ Sbjct: 646 VQTENGLEELVINDNLFANPLYEEAVHIFTKMKERDIDLK-----------RDPVEVLED 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 I +KG +QRYKGLGEMN SQLWETT+NP+ R LL++ +++ A ++F MGDEV Sbjct: 695 IEKNAKKGAYIQRYKGLGEMNPSQLWETTMNPENRRLLKIDVSNLQTASEIFELFMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR++IQ ++ LD+ Sbjct: 755 EPRRDYIQAHAKDVKHLDV 773 >gi|78776204|ref|YP_392519.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251] gi|78496744|gb|ABB43284.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251] Length = 769 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 340/798 (42%), Positives = 485/798 (60%), Gaps = 32/798 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y A +I++LKGL+AV+KRP MYIGDT G GLHH++YEV+DN+IDE++ GY + I VT Sbjct: 2 ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGYCNTINVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +G+C VSDNGRGIPTD+H+ EG+SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV Sbjct: 61 LTKEGTCRVSDNGRGIPTDMHEGEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALSS LK+ I+R G I+E +F GI L TGT + F P IF+ Sbjct: 121 VNALSSDLKMTIQRNGEIHEQNFKKGIPQEAL-NVIGTTKKTGTTIEFSPDPSIFTETVI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L R +EL++LN + I D+R+ E +GGI +V+ L++ ++ Sbjct: 180 FEYEYLARRFKELAYLNPFITIIFKDERTNVKEEYHF--EGGIAQYVTDLNKKQEVA--K 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 ++I D+++ +ND Y E V F NNI +GGTH +G R+ LTR I++Y + Sbjct: 236 VFVFSSKIEDIEFDISLMYNDTYDEKVYSFVNNIRTPNGGTHEAGFRAGLTRVISNYNTQ 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +K+ + G+D EG +V+S+++P+P+F QTK KL ++ VR +V+ + LS Sbjct: 296 NGAAKEKDVKISGEDTSEGLIAVVSVRVPEPQFEGQTKGKLGNTYVRPLVQKATYELLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK IV K L A+ R+AA++AR+LTRRK + + +LPGKLADC +D E Sbjct: 356 YFEENPIEAKAIVAKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASICE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAK GR R QAILPL+GKILNVE+AR DK+L S+EI +ITA+G GIG Sbjct: 416 LYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITAMGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ ++ +KLRYHK+IIMTDADVDG+HI+TLLLTFFFR S+I NG+LY+ +PPLY + Sbjct: 476 EE-YNEDKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y KD+ ++ D+LI + + NDL ++ ++ Sbjct: 535 GKKEIYFKDDRAMNDFLIENGIESL------EGQSVGHNDLLSYFKMVDHYRGSLEALKK 588 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + + I E+ I + + + F+A +++ I + Sbjct: 589 RYALVELIRHFI------ENPDLIGLDIDNMYKKIEEFLALGGNNILTKTVSQDSIHIFV 642 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 +G E+ ++ + +I+E L +LD I Sbjct: 643 QTKGGMEELLINDDLFGAPHFAEASFVYRKIKEWNLDFN-----------EDILVVLDNI 691 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +KG +QRYKGLGEMN QLWETT+ P+ R LL+V I DA A D F+ MGDEVE Sbjct: 692 IEYAKKGSYIQRYKGLGEMNPDQLWETTMTPENRVLLQVTIDDAELASDTFTLFMGDEVE 751 Query: 787 PRREFIQENSLPSA-LDI 803 PRR +I+ ++ LD+ Sbjct: 752 PRRNYIETHAKDVKHLDV 769 >gi|115373779|ref|ZP_01461072.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1] gi|115369178|gb|EAU68120.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1] Length = 774 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 348/776 (44%), Positives = 491/776 (63%), Gaps = 17/776 (2%) Query: 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG---ISAA 96 GLH ++YEV+DNA+DE+L GY I+V +++DGS +V DNGRGIP H + Sbjct: 4 GLHKLVYEVVDNAVDEALAGYCTEISVDIHVDGSLSVQDNGRGIPVGPHPDPKFHDKDTV 63 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 +V++T LHAG KF +YKVSGGLHGVGV+ VN LS WLK+RI+R G +YE S+ GI D Sbjct: 64 DVVLTELHAGSKFGNGAYKVSGGLHGVGVTCVNFLSEWLKVRIQRNGKVYEQSYSRGIPD 123 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 + G + GT V F P + + DF+++TL RLREL+FLN+ + IS+ D+R+ Sbjct: 124 GKVKEVG-TTDKRGTLVWFKPDTQVMEAVDFDFETLSQRLRELAFLNAGLHISIRDERTN 182 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + E + GGI +FV YL++ K+ L PI ++ ++ +S++LAM+WNDGY E + F Sbjct: 183 KEHE--FKFDGGIGSFVEYLNKSKQALHDKPIFVRTEKEGVSLELAMQWNDGYDERIYTF 240 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 NNI +GG+HLSG ++ALTR + SY EKS K K + G+D REG +V+S+K+ + Sbjct: 241 ANNINTHEGGSHLSGFKAALTRTLNSYAEKSGLWKDLKETPTGEDAREGLAAVISVKLSN 300 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL +SE++ +VE VND L+ +LEE+P K +V K+ DA R AAR+AR Sbjct: 301 PQFEGQTKTKLGNSEIKGLVEQMVNDQLATYLEENPSNGKKVVAKIGDACRARIAARKAR 360 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 + RRKG+LD LPGKLADC RDPK+SEL++VEGDSAGGSAKQGR R NQAILPLRGK Sbjct: 361 ETVRRKGILDGGGLPGKLADCQSRDPKESELYIVEGDSAGGSAKQGRDRRNQAILPLRGK 420 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVE+ARF+KML+S EI TLITALGTGIG + +D K RY++II+MTDADVDG+HIRTL Sbjct: 421 ILNVEKARFEKMLTSAEIITLITALGTGIGAEDYDPAKARYNRIILMTDADVDGSHIRTL 480 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFFFRQM L+ G+LYI +PPLY +TR K YVKDE +L +YL+ ++ E Sbjct: 481 LLTFFFRQMRELLDLGYLYIAQPPLYKVTRNKKDLYVKDERALNEYLLR--IAAEHSRVV 538 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 G + ++L++ ++ + ++ ++ D ++ V + E+ + A Sbjct: 539 TPNGELGGSELKSILEKVITYEERLEKQAKRRDARVVDALVQAARVKAETLADEKGLEAE 598 Query: 637 KLANRLNFIAE--------KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 +F K E+ + ++ G + VL+ + + S Sbjct: 599 VDRMYADFRKRMPDVLGRVKHERRDDPEHHTKKLVFHTEINGSMRETVLDHAFLSSPEYL 658 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNAS 748 + ++ +G ++ +L + +KG+ +QRYKGLGEMN Sbjct: 659 ELVALREAVTGLGRPPYTVKVDGGEVTAFSVQEVLAVVRKDAQKGLGLQRYKGLGEMNPE 718 Query: 749 QLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLW+TT+NP TR+LL+V++ DA ++D +FS LMG+ VEPRREFI+ N+L LDI Sbjct: 719 QLWDTTMNPATRTLLQVQLKDAVESDGIFSLLMGEAVEPRREFIERNALDVQNLDI 774 >gi|299136177|ref|ZP_07029361.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8] gi|298602301|gb|EFI58455.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8] Length = 880 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 353/869 (40%), Positives = 502/869 (57%), Gaps = 77/869 (8%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q +Y ++I IL+GL AV+ RP+MYIG T GE GLHH++YEV+DN++DE+L G+A I Sbjct: 18 QPGTYTGENITILEGLAAVRLRPAMYIGST-GEQGLHHLVYEVVDNSVDEALAGHATRID 76 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHK---EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 VT+++D S TV D+GRGIP D E + A +V++T LHAGGKF+ +YKVSGGLHG Sbjct: 77 VTIHVDNSITVVDDGRGIPVDNKTLPTGETMPAVQVVLTMLHAGGKFDASNYKVSGGLHG 136 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS + I R+G +EM + G + L G + GT++ FLP IF Sbjct: 137 VGVSCVNALSEEFDVEIWRDGFTWEMDYSKGDPISELRKMGPSK-RRGTKIHFLPDKTIF 195 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSYLDR 238 +V ++N+DTL +RLR+L+FLN ++ISL D+R + + T Y GGI F+ L++ Sbjct: 196 TVTEYNFDTLANRLRQLAFLNKGIEISLTDERQVDTKGETKSQVYKYTGGIAEFIKLLNK 255 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L + PI ++ + N+ +++A+++ND Y E V F NNI DGGTHLSG R+ALTR Sbjct: 256 GKQVLHEKPIYMETEQGNVVMEIALQYNDAYSETVFSFANNINTVDGGTHLSGFRTALTR 315 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I ++ K K ++ GDD REG +V+S+K+P P+F QTK KL +S++ V++ Sbjct: 316 TINVAGQQLGLFKDVKENLSGDDVREGLVAVVSVKLPQPQFEGQTKGKL-NSDIAGQVQA 374 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 FVN+ L A+LE++P A+ I+ K +DAS R+AAR+ARDLTRRKG LD LPGKLADCS Sbjct: 375 FVNERLGAFLEQNPSVARKIINKAIDASRAREAARKARDLTRRKGALDGGGLPGKLADCS 434 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ER P+ EL+LVEG+SAGG+AKQGR R+ QAILPL+GKILNVE+AR+DKML +EI +I Sbjct: 435 ERRPELCELYLVEGESAGGTAKQGRDRKFQAILPLKGKILNVEKARYDKMLGHEEIRAMI 494 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FD KLRY K+I+MTDADVDG+HIRTLLLTFFFR M LI G +YI + Sbjct: 495 TALGTGIGKDDFDTAKLRYGKLILMTDADVDGSHIRTLLLTFFFRHMQELIKRGHVYIAQ 554 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ I +GK QY+KDE ++ ++ I + + + +L ++ Sbjct: 555 PPLFRIKKGKFEQYIKDEREYVQVMVKRASDGMIIRYGEGGSKLEGKELTKYMSQLNDYL 614 Query: 599 KLIKDFYPNHD-----KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK----- 648 + F E G + + + RL + Sbjct: 615 SFYDKVVKRLRNDEVVRAFAEIFANEGKDSVSRADFETDAKLKDMRARLKELERPELFKH 674 Query: 649 -SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 SE + + ++ + + + S+ +I E + + Sbjct: 675 VSEVEFDEEHRTYSVSFTDAQGALRH---INWTLASAPESRQLLGKHAQIREQLVGPFLI 731 Query: 708 ICNG----------------------------------------------------DKIK 715 G D ++ Sbjct: 732 EYAGKNAAATTKSVEEQAEQDLEDTDEVELEGAVDVGTVAPVEAAKPVKRSAKVSQDPVE 791 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 P + + + GRK +QRYKGLGEM A QLW+TT++P R+LL+VK+ D + ++ Sbjct: 792 RKTPREVFEYVIEQGRKEYQVQRYKGLGEMTAPQLWDTTMDPARRTLLQVKLEDIAATEE 851 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +F+ LMG++VE RR+FI+EN+L LDI Sbjct: 852 IFTTLMGEDVESRRKFIEENALDVKNLDI 880 >gi|307719924|ref|YP_003891064.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294] gi|306978017|gb|ADN08052.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294] Length = 772 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 340/800 (42%), Positives = 477/800 (59%), Gaps = 32/800 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A +I++LKGL+AV+KRP MYIGDT G GLHH++YEV+DN+IDE++ GY D ITV Sbjct: 2 QQEYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGYCDTITV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL +G+C VSDNGRGIPTD+H E +SAA V++T LHAGGKF++ +YKVSGGLHGVGVS Sbjct: 61 TLTKNGTCKVSDNGRGIPTDMHPTENMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSS L + I REG I+E F GI PL VTG+ T + F IF+ Sbjct: 121 VVNALSSDLHMTIYREGKIHEQDFKMGIPQGPLEVTGTTRKTG-TTIEFAADPSIFTETI 179 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ L R +EL++LN + I D+R+ +GGI +VS +++ + Sbjct: 180 TFEYEYLAKRFKELAYLNPFITIKFNDERTNTKEVYHF--EGGIAQYVSDMNKREVVAN- 236 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 G ++I D+A+ +ND Y E + F NNI +GGTH +G R+ LTR I++Y Sbjct: 237 -VYSFSGKAEDIEFDIAIMYNDSYEEKLASFVNNIRTPNGGTHEAGFRAGLTRVISNYNS 295 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +K+ + GDD +EG +++S ++P+P+F QTK KL ++ VR +++ + L+ Sbjct: 296 KNGAAKEKDVKISGDDVKEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLIQKATGEALN 355 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + EE+P+EAK IV K L A+ R+AA++AR+LTRRK + + +LPGKLADC +D Sbjct: 356 KYFEENPIEAKAIVSKALMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASIC 415 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAK GR R QAILPL+GKILNVE+AR +K+L S EI +ITA+G GI Sbjct: 416 ELYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLEKILKSDEITNMITAMGCGI 475 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ ++ KLRYHKIIIMTDADVDG+HI+TLLLTFFFR +I G+LY+ +PPLY Sbjct: 476 GEE-YNEEKLRYHKIIIMTDADVDGSHIQTLLLTFFFRYFRDIIEKGYLYLAQPPLYRYK 534 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK Y KD+ ++ DYLI+ + + NDL + ++ Sbjct: 535 KGKKEIYFKDDRAMNDYLIDNGIESLDID------GVGHNDLVAYFKMVDHYASSLEALN 588 Query: 606 PNHDK-TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + I + + +E+ V + L + N I + I+ L Sbjct: 589 RRYALVKLIRHFIENPDLIALPAKEMFVEIEKFLTSIGNNILTYTINEETNEIH----LF 644 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 + G++E ++ + +I E D +L+ Sbjct: 645 VQTQTGMEE-LLINDDLFSAPHFNEASFVYKKIMEW-----------DIHFDKDIIEVLE 692 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 I +KG +QRYKGLGEMN QLWETT+ P+ R LL++ I DA A D F+ MGDE Sbjct: 693 DIKDYAKKGAYIQRYKGLGEMNPEQLWETTMTPENRVLLQISIEDAEVASDAFTLFMGDE 752 Query: 785 VEPRREFIQENSLPSA-LDI 803 VEPRR +I+ ++ LD+ Sbjct: 753 VEPRRNYIETHAKDVKHLDV 772 >gi|223936717|ref|ZP_03628627.1| DNA gyrase, B subunit [bacterium Ellin514] gi|223894568|gb|EEF61019.1| DNA gyrase, B subunit [bacterium Ellin514] Length = 853 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 361/844 (42%), Positives = 502/844 (59%), Gaps = 47/844 (5%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + SYDA I L+GLD V+KRP MYIG TD E GLHH ++EV+DN+IDE L G+ Sbjct: 15 AKPEAGDSYDASKIDKLEGLDGVRKRPGMYIGPTD-ERGLHHCVFEVMDNSIDEHLAGFC 73 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+++DGS ++ DNGRGIP D H++ G+ A E ++T LHAGGKF Q +YK SGGL Sbjct: 74 SKIEVTMHVDGSVSIRDNGRGIPVDSHEKTKGMPAVEFVLTHLHAGGKFGQGAYKYSGGL 133 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG VNALS W K+ + R+ +Y M+F G L V GS+ +TGT +TF Sbjct: 134 HGVGAKCVNALSDWFKVEVSRDSKVYHMAFERGKTTETLKVIGSSK-NTGTLITFKADPT 192 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ +F ++ L +RLREL+FLN + I L D+R E + F++ G+ FV L ++ Sbjct: 193 IFTITTEFKFEILANRLRELAFLNPGLVIQLTDER-AESKSEKFFFEDGVRDFVEQLGKN 251 Query: 240 KKPLMQSPIRIQGSRD-------------NISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 K+ + PI + G R ++ +D +++ND Y + +LC+TN IP DGG Sbjct: 252 KQVIHPKPIVLNGRRPVKYKGKDGNEVEADMILDCVLQYNDSYSDQILCYTNAIPNPDGG 311 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 +H +G R+ALTR I Y + + K+ S+ GDD REG +V++IK P+P F SQTK K Sbjct: 312 SHSTGFRTALTRAINQYAKANNLIKEKDPSLTGDDVREGLVAVVAIKHPNPSFESQTKVK 371 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 LV+ E +V S DGL A+ + +P AK IV K L A A R T RK L Sbjct: 372 LVTPEAEGIVSSITYDGLMAYFDGNPSAAKKIVDKGLTA-ARAREAARKARETVRKSALT 430 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 LPGKLADCS+RDP +E+++VEGDSAGGSAKQGR R+ QAILP+RGK++NVE+AR D Sbjct: 431 GGGLPGKLADCSDRDPANTEVYIVEGDSAGGSAKQGRDRKFQAILPIRGKLINVEKARLD 490 Query: 467 KMLSSQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 K+L + EI T+ITA+GTGIG + SF+I KLRYHKIIIMTDADVDG+HIRTLLLTFF+ Sbjct: 491 KVLQNTEIRTMITAVGTGIGDGEGEGSFNIQKLRYHKIIIMTDADVDGSHIRTLLLTFFY 550 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 RQMP LI GF+YI +PPLY I+R K ++YV+D+ L LI + E + Sbjct: 551 RQMPQLIKGGFIYIAQPPLYQISRKKRVEYVEDDAQLNKILIQIATDEVRLRNITDGKEM 610 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNH--DKTFIEQ------AVISGVFNCESDQEINVSL 634 S++ L ++ +DK + + +IE + + S + V Sbjct: 611 SRSQLAEILELLESLDKFARAIRRHGGDFSDYIEHRNGQTGELPRHLVKVRSGNDETVHF 670 Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILV----------KRIARGVQEQ----FVLEGS 680 F +E S+ G+ SD + R AR V+ V Sbjct: 671 FHTEEELAKFSSENSDLRLFGNEEESDTEILEKEKIKNGPSRRARHVELHESKAIVELLG 730 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + S G +S + + + I + +LD++ +GR+GI ++R+K Sbjct: 731 KLRSKGLD-IEHYSAQDKPLFELIEGEGEKQTVKPLFSIAEILDSVLEVGRRGIQIKRFK 789 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA+QL+ETT++P R LLRV + DA +A+++FS+LMGDEVEPRR+FI++N+L Sbjct: 790 GLGEMNAAQLFETTMDPAKRKLLRVDLADAVEAEEMFSKLMGDEVEPRRQFIEDNALNVR 849 Query: 800 ALDI 803 LD+ Sbjct: 850 NLDV 853 >gi|4033395|sp|O33367|GYRB_MYXXA RecName: Full=DNA gyrase subunit B gi|2578422|emb|CAA04176.1| DNA gyrase B subunit [Myxococcus xanthus] Length = 815 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 340/810 (41%), Positives = 478/810 (59%), Gaps = 26/810 (3%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y DSI L+G +AV+KRP MYIGDT GLH ++YEV+DNA+DESL G+ I V + Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDTMA-YGLHKLVYEVVDNAVDESLAGHCTDIEVVI 75 Query: 69 NMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++DGS +V DNGRGIP H + G EV++T LHAG KF +YKVSGGLHGVGV+ Sbjct: 76 HVDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTC 135 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VN LS W K+R+ R G +YE ++ G+ D P G + GT + F P + + + +F Sbjct: 136 VNFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVG-TTDKRGTHIAFKPDATVMELVEF 194 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 N++TL RLREL+FLN+ + I + D+R+ + + + GGI +FV YL++ K+ L P Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHD--FKFDGGISSFVEYLNKSKQTLHDKP 252 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I R+ + +D+AM+WNDGY E + F NNI +GG+HLSG ++ALTR + SY EK Sbjct: 253 ISFSTEREGVMLDIAMQWNDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKG 312 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K K + G+D REG ++V+S+K+ +P+F QTK KL +SEV+ +VE VND L ++ Sbjct: 313 SLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSF 372 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE P+ AK +V K+ DA R AAR+AR+ RRKGVLD LPGKLADC RDP +SEL Sbjct: 373 LEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESEL 432 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR R NQAILPLRGKILNVE+ +ML+S EI TLITALG GIG Sbjct: 433 YIVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGA 491 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + +D K RYH+I +MTDADVDG+HIRTLLLT + S Y +TR Sbjct: 492 EDYDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRN 551 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K QYVKDE +L +YL+ ++ E G + +L+ ++ + ++ ++ Sbjct: 552 KKDQYVKDEHALNEYLLK--IASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKR 609 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRI 667 D ++ V + E+ + + W + R Sbjct: 610 RDARVVDALVQGARLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSW----CRT 665 Query: 668 ARGVQEQFVLEGSSIFSFGSKYK-------------RIFSNRIEENYLTILSLICNGDKI 714 + + + G + R+ + + + +I Sbjct: 666 PSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQGAVQGPRGRGEI 725 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + +L + ++G+ +QRYKGLGEMN QLW+TT+NP TR+LL+V++ DA ++D Sbjct: 726 TVFSVQEVLAAVRKDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESD 785 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++FS LMG+ VEPRREFI+ N+L LDI Sbjct: 786 EIFSLLMGEAVEPRREFIERNALDVQNLDI 815 >gi|254457757|ref|ZP_05071185.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1] gi|207086549|gb|EDZ63833.1| DNA gyrase, B subunit [Campylobacterales bacterium GD 1] Length = 769 Score = 763 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 340/798 (42%), Positives = 483/798 (60%), Gaps = 32/798 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y A +I++LKGL+AV+KRP MYIGDT G GLHH++YEV+DN+IDE++ G+ D I +T Sbjct: 2 ENYGASNIKVLKGLEAVRKRPGMYIGDT-GHRGLHHLVYEVIDNSIDEAMAGHCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L + +C VSDNGRGIPTD+H EG+SAA V++T LHAGGKF++ +YKVSGGLHGVGVSV Sbjct: 61 LTKENTCRVSDNGRGIPTDMHPTEGMSAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALSS LK+ I REG I+E +F GI L VT TGT + F IF+ Sbjct: 121 VNALSSDLKMTIYREGEIFEQNFKKGIPQEILAVT-GKTRKTGTTIEFSADPSIFTDTVT 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L R +EL++LN + I D+R+ + E +GGI +V+ + +KK ++ Sbjct: 180 FEYEYLSKRFKELAYLNPFITIIFKDERTDKKEEYHF--EGGIAQYVADM--NKKAVIAQ 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 ++I D+A+ +N+ Y E + F NNI +GGTH +G R+ LTR I++Y + Sbjct: 236 VYSFTAKVEDIEFDIALMYNESYEEKLASFVNNIRTPNGGTHEAGFRAGLTRVISNYNAQ 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + +K+ + G+D EG +++S ++P+P+F QTK KL ++ VR +V+ + LS Sbjct: 296 NGAAKEKDTKISGEDASEGLIAIVSARVPEPQFEGQTKGKLGNTYVRPLVQKQTYELLSK 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+EAK IV K L A+ R+AA++AR+LTRRK + + +LPGKLADC +D E Sbjct: 356 YFEENPIEAKAIVSKSLMAARGREAAKKARELTRRKDSMSVGTLPGKLADCQSKDASICE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAK GR R QAILPL+GKILNVE+AR DK+L S+EI +ITA+G GIG Sbjct: 416 LYLVEGDSAGGSAKMGRDRVFQAILPLKGKILNVEKARLDKILKSEEITNMITAMGCGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ ++ KLRYHK+IIMTDADVDG+HI+TLLLTFFFR S+I NG+LY+ +PPLY + Sbjct: 476 EE-YNEEKLRYHKLIIMTDADVDGSHIQTLLLTFFFRHFRSVIENGYLYLAQPPLYRYKK 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK Y KD+ ++ DYLI + I NDL ++ + Sbjct: 535 GKKEIYFKDDRAMNDYLIENGIESL------DVEGIGDNDLVSYFRMVDHYRGSLVALER 588 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + + I E+ I + + S F+ + SI + I + Sbjct: 589 RYALVDLIRHFI------ENPDLIGLDIKSMYEKVEKFLVDNGNNILTKSITDEYIHIFV 642 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + E+ ++ + +I+E + +L+ I Sbjct: 643 QTKDGMEELLINDDLFSAPHFNEASFVFKKIQEWNINFD-----------EDILVVLENI 691 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +KG +QRYKGLGEMN QLWETT+ P+ R LL+V+I DA A D F+ MGDEVE Sbjct: 692 NEYAKKGAYIQRYKGLGEMNPDQLWETTMTPENRVLLQVQIEDAEVASDAFTLFMGDEVE 751 Query: 787 PRREFIQENSLPSA-LDI 803 PRR +I+ ++ LD+ Sbjct: 752 PRRNYIETHAKDVKHLDV 769 >gi|149919818|ref|ZP_01908295.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1] gi|149819425|gb|EDM78856.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1] Length = 872 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 365/843 (43%), Positives = 513/843 (60%), Gaps = 52/843 (6%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YD SI L+GL+AV+KRP MYIGDTD +GLH M++E+LDN+IDE+L G+ I + + Sbjct: 34 AYDESSISHLEGLEAVRKRPGMYIGDTD-VTGLHKMVFEILDNSIDEALAGHCKQIQIVI 92 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEG--ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + D S +V D+GRGIPT + EG + AA + T+LH GGKF+ +YKVSGGLHGVGV+ Sbjct: 93 HEDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVT 152 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL+L IKREG ++ F G + L V G GT+VTF I++ Sbjct: 153 VVNALSDWLELEIKREGKVFTARFERGEVARELDVVGETE-ARGTKVTFHADPLIYTGVR 211 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS-------Y 235 ++DTL R RELS+L V I+L D R + RE + +GG+ +FV Sbjct: 212 VDFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTR 271 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + + Q P +G + + +A++W D YHE V C+TNNI +DGGTHL+GLR++ Sbjct: 272 IGAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHEMVHCYTNNIANRDGGTHLTGLRTS 331 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y K K S+ G+D REG +++S+K PDP+F+SQTKEKLVSSEV ++ Sbjct: 332 LTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTAL 391 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V + V + LS EE P +AK++V+K L A+ R AAR+AR+ RKGVLD SLPGKLA Sbjct: 392 VGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLA 451 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP+ +ELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR DK+LSSQEI Sbjct: 452 DCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIV 511 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D++ I+KLRYHKIIIMTDADVDG+HIRTLLLTFFFR +I G+LY Sbjct: 512 TLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLY 571 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY + GK +Y+K+E +L++++++ ++++ SK L + + Sbjct: 572 VAQPPLYKVKAGKKERYIKNEGALDEFIVSNAVADLELEI--GGAAASKEVLAEVANAGI 629 Query: 596 KIDKLIKDFYPNHDKTFIE--------------------------QAVISGVFNCESDQE 629 + + +++ H + +E A+ V Sbjct: 630 RYNNVLRSLEREHRRGILEGILGAIEARGWEAVEAAFEQGDDAFLAAMGQAVVEAAVPTM 689 Query: 630 INVSLASKLANRLNFIA-------EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682 +A+ L L+ + ++ E + + + ++ GV + + Sbjct: 690 PLTKVAASLRKVLDEVEAPAEGEGDEGEGEVQAARERTVLRFAVLSDGVTVNEDVGLPLL 749 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKG 741 S + + + L GD I + ++D + +GR G+S+QRYKG Sbjct: 750 RSTEIRELLRIRAELAARGEGAIKLRKKGDTIAEPKSLMQVIDHVGEVGRSGLSIQRYKG 809 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMN QLWETT++P+ R LL++KI + AD++F+ LMGDEV PRREFI EN+L + Sbjct: 810 LGEMNPDQLWETTMDPENRELLQIKIAEKDIADEVFTVLMGDEVAPRREFITENALNTRN 869 Query: 801 LDI 803 LD+ Sbjct: 870 LDV 872 >gi|251771682|gb|EES52257.1| DNA gyrase, B subunit [Leptospirillum ferrodiazotrophum] Length = 810 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 323/818 (39%), Positives = 481/818 (58%), Gaps = 26/818 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ +Y I+IL+GL+AV+ RP MYIG T G GLHH++YE++DN++DESL GY Sbjct: 2 NSQIQDTYGEQQIRILEGLEAVRVRPGMYIGST-GIDGLHHLVYELVDNSVDESLAGYCT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V L+ D S TV DNGRGIPT +H E+ SAAEV++T LHAGGKF+ +YKVSGGLHG Sbjct: 61 AIEVILHSDRSVTVKDNGRGIPTGMHPEQNRSAAEVVLTVLHAGGKFDNNTYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS L L I ++GN + + GI + PL TGT + F P I Sbjct: 121 VGVSVVNALSETLFLDIDQKGNHFRQVYHKGIPEAPLA-ITGTSETTGTSIRFYPDLTIM 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F++D L HR REL +LN ++ I I + RE +GGI +F+ +++ +K+ Sbjct: 180 ETDAFSFDVLAHRFRELGYLNPALTI--ILREEETLREEVFHDEGGIRSFLLFVNENKRT 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + + + +++ ++ D E +L + NNIP ++GGTH+ G R+ALTR + Sbjct: 238 IHDPLSFRKSFDNGSTFEISFQYQDTTDAETLLSYVNNIPTREGGTHVRGFRAALTRVVN 297 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +++ +K ++ G+D REG ++++SIK+P+P+F QTK KL SS V +E+F+ Sbjct: 298 RFIKDKNLNKGEEVR--GEDIREGLSAIVSIKIPNPQFEGQTKAKLGSSWVSGAMETFLA 355 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L E+ A+ I K + ++ R+AAR+AR+LT+RK VL+ ++LPGKLADC E D Sbjct: 356 EALEDAFEKQGAVARAIADKAILSAQAREAARKARELTKRKNVLEGSNLPGKLADCQEND 415 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR-FDKMLSSQEIGTLITA 480 P KSEL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+++ +K ++ E+ LITA Sbjct: 416 PAKSELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSKGVEKFITHDEVRALITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G + F + LRYHKIIIMTDADVDGAHIRTLLLTFFFR M LI ++YI +PP Sbjct: 476 VGCGLGAEEFSLKNLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNLLIDGSYVYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + K +Y+ ++++LE +++ ++ + ++ + + + + ++ Sbjct: 536 LYKVAFQKQERYLLNDQALEAFILEKASEKVDFSASEAGPWLEGEEAVKRLLVLSRYEQE 595 Query: 601 IKDFYPNHDKTFIEQAV-ISGVFNCE--SDQEINVSLASKLANRLNFIA-------EKSE 650 +K + + + + E +E + R + Sbjct: 596 VKYWTNRVGHGPLLALFGLYPSLSGEILHHEEEARAFVEFCRARYGESSGGGVLEGTVHP 655 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIF--SFGSKYKRIFSNRIEENYLTILSLI 708 G ++ + G + + L+ + GS+ RI E + Sbjct: 656 VEGSGDTPLLRLVFESRQLGYESRLTLDPALFGGMVGGSRSLRILRT---EGLQGPYRIR 712 Query: 709 CN--GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 G+ P ++L + R I++QRYKGLGEMN QLWETT++P R+LL+V Sbjct: 713 DRESGEVRTFNSPGAVLAAVTGPVRSKITLQRYKGLGEMNPEQLWETTMDPAKRTLLKVS 772 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I D +AD +F+ LMGD+V PRREFI++N+L LDI Sbjct: 773 IPDYLEADRIFTILMGDQVAPRREFIEQNALDVSNLDI 810 >gi|237753472|ref|ZP_04583952.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430] gi|229375739|gb|EEO25830.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430] Length = 770 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 348/805 (43%), Positives = 494/805 (61%), Gaps = 41/805 (5%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +++ Y SI++LKGL+AV+KRP MYIGDT +GLHH+IYEV+DN IDE++ GY I Sbjct: 1 MEDLEYTGQSIKVLKGLEAVRKRPGMYIGDTS-TNGLHHLIYEVVDNCIDEAMAGYCTKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L +G ++DNGRGIP D+H E I AA V +T LHAGGKF+QK+Y SGGLHGVG Sbjct: 60 DVILTKNGGAKITDNGRGIPVDIHPTENIPAATVALTILHAGGKFDQKTY--SGGLHGVG 117 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS+ L++ I + IY F GI N L + G + GT + F+P S IF V Sbjct: 118 VSVVNALSTSLQMTIYKHNKIYRQDFSQGIPQNDLEIIGETK-ENGTTIEFIPDSSIFEV 176 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L+ R +EL++LN + I D+R +GG+ F++ D +KKP + Sbjct: 177 VEFDKEILKKRFKELAYLNHQITIHFSDERDGFSEIYHF--EGGLSQFIT--DINKKPAI 232 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S + +G + + +++A+ +N+G+ E VL F NNI +GGTH +G R+ LTR I +Y+ Sbjct: 233 VSILGFEGKDEGVEVEVALTYNEGFDEKVLSFVNNINTSEGGTHEAGFRAGLTRTIMNYI 292 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 E + +++ + GDD REG +++S+++ DP+F QTK KL S+ V+ +V+ + + Sbjct: 293 EANANAREKDSKITGDDIREGLVAIVSVRVIDPQFVGQTKGKLGSTFVKPIVQKLTYEKI 352 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P EAK I++K L A+ R+AA++AR+LTR+K + +LPGKLADC +DP Sbjct: 353 SKYFEENPNEAKAIMQKALLAARGREAAKKARELTRKKESFSVGTLPGKLADCQSKDPSI 412 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L S+EI LITALG G Sbjct: 413 SELYLVEGDSAGGSAKQGRDRVYQAILPLRGKILNVEKSRLDKILKSEEIKNLITALGCG 472 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI K RY+KIIIMTDADVDG+HI+TLL+TFFFR + +I G+LYI +PPLY Sbjct: 473 IGEE-FDIEKARYNKIIIMTDADVDGSHIQTLLMTFFFRYLKGIIEAGYLYIAQPPLYRF 531 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK Y+KDE++L +YLI + I DL F +++ Sbjct: 532 KKGKKEIYLKDEKALSEYLIENGIENFEFS------GIGNKDLMEFFKITAHYRTTLQNL 585 Query: 605 YPN-----HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 K IE + G N + Q I + + N LN + ++ + + + Sbjct: 586 KKRFSLIEIVKFLIENPDLIGAKNSDLVQAIKEKITALHFNILNEMIDEEKIHLYVQTDA 645 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +K ++ + R +++E L L NG+ P Sbjct: 646 GLVDIK-----------IDDELFTHPLFEEARYVYEKMQERDLDFL----NGE-----DP 685 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 ++L+ I +KG +QRYKGLGEMN QLWETT+ P+ R L+RV+I D A D+FS Sbjct: 686 IAMLEKIEDSSKKGAYIQRYKGLGEMNPEQLWETTMTPENRRLIRVEIKDDGTASDVFSL 745 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 MGDEVEPRRE+IQ ++ LD+ Sbjct: 746 FMGDEVEPRREYIQAHAKDVKHLDV 770 >gi|91203531|emb|CAJ71184.1| strongly similar to DNA gyrase subunit B [Candidatus Kuenenia stuttgartiensis] Length = 820 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 360/829 (43%), Positives = 513/829 (61%), Gaps = 35/829 (4%) Query: 1 MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++N ++ +YDA SI+ L G++AV+KRP+MYIGDT +GLHH++ E++ N++D Sbjct: 1 MTNNDTLDAVLEADAYDATSIKTLGGIEAVRKRPAMYIGDTTA-NGLHHLVEEIVCNSVD 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ + I V +N+DGS TV D+GRGIP D+HKE SA EV+MT LHAGGKF KSY Sbjct: 60 EALAGFCENIAVKINVDGSVTVVDDGRGIPVDIHKETNKSALEVVMTMLHAGGKFEHKSY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 K SGGLHGVGVSVVNALS W ++ +KR G++Y + G + P+ G GT++ Sbjct: 120 KTSGGLHGVGVSVVNALSEWFEVEVKRNGHVYFQRYEKGEVITPVETRGITK-KRGTKIV 178 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P +IF F Y+T+ RLRE +FLN ++I+ D+++ + T Y+GGI AFV Sbjct: 179 FKPDHEIFEDTAFCYETIAKRLREYAFLNKGLKITFTDEKTDKN--ETFQYEGGIRAFVE 236 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 L+ K+ + + I ++ + I +++A ++N+ Y+EN+ F NNI +GGTHLSG R+ Sbjct: 237 ELNSGKEMIHKDIIYLEKEINEIVVEVAFQYNESYNENIYSFANNINTVEGGTHLSGFRA 296 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y+ K+ + ++++ GDD +EG T+V+SIK+P+P+F QTK KL + EV+ Sbjct: 297 ALTRTLNNYL-KNKKIQGEEKAPTGDDYKEGLTAVISIKLPEPQFEGQTKTKLGNREVQG 355 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +VE+ + + L + EE P AK I+ K ++AS R+AAR+ARDLTRRKG L ++LPGKL Sbjct: 356 IVETIIGEQLGIYFEETPSTAKAIINKGIEASRAREAARKARDLTRRKGALSSSNLPGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS RD + SELFLVEG SAGG+AKQGR R QAILPL+G ILNVE+AR DKMLS++EI Sbjct: 416 ADCSSRDFETSELFLVEGISAGGTAKQGRDRRVQAILPLKGVILNVEKARIDKMLSNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 TLI+ALGTGIG D F++ LRY KIIIMTDAD+DGAHIRTLLLTFFFRQM LI G + Sbjct: 476 RTLISALGTGIGIDDFNLKNLRYAKIIIMTDADIDGAHIRTLLLTFFFRQMIELIDKGHV 535 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF-CDSKGVISKNDLRNFIDD 593 YI +PPL+ I + K +Y+ D++ L+ LI + + D K + L + Sbjct: 536 YIAQPPLFKIVKNKRQEYIYDDKGLQKKLITFGIEGTVMEICSDKKETLDSQTLEKLLPL 595 Query: 594 ALKIDKLIKDFYPNHDK------------------TFIEQAVISGVFNCESDQEINVSLA 635 +++++ IK + I+ + + E + Sbjct: 596 LVQMEEHIKFLSKKGVSLRKFLSLRNKETGKLPYYKVTYKDKITYLSSEEDLEAYIKEKQ 655 Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695 K L + E I V + + + + I FG F Sbjct: 656 QKEGKELEILEEDDMADEKEKGEGGAIEVIEYHECKEIEKTI--NLIEGFGFTIDEYFRG 713 Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 + +E LI +I +L+ I I RKG+ +QRYKGLGEMNA +L ETT+ Sbjct: 714 QNDE--KPKYKLIAGESEINAFSLNEILEKIREIARKGMEIQRYKGLGEMNAEELAETTM 771 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 N +TR+LL+VK+ DA++AD +FS L G +V+ RREFI++++L LDI Sbjct: 772 NFNTRTLLKVKVEDAAKADSIFSTLAGKDVQRRREFIEKHALEVRNLDI 820 >gi|224372073|ref|YP_002606445.1| DNA gyrase subunit B [Nautilia profundicola AmH] gi|223589802|gb|ACM93538.1| DNA gyrase, B subunit [Nautilia profundicola AmH] Length = 758 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 339/800 (42%), Positives = 479/800 (59%), Gaps = 47/800 (5%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y A +I++LKGL+AV+KRP MYIGDT GLHH+IYEV+DN+IDE++ GYA+ I V Sbjct: 2 SDYGAKNIRVLKGLEAVRKRPGMYIGDTS-VKGLHHLIYEVVDNSIDEAMAGYANEIKVK 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +SDNGRGIP D+H EE I AA V++T LHAGGKF+ K+YKVSGGLHGVGVSV Sbjct: 61 INKDGSAEISDNGRGIPVDIHPEEKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNAL+ L + IKR+G I+ F G L V G N TGT + F P +IF F Sbjct: 121 VNALAKKLIMTIKRDGKIWRQEFERGKPVTDLEVIG-TTNRTGTTIQFWPDEEIFETTTF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS--YLDRHKKPLMQ 245 + LQ RL+EL++LN ++ I + + + Y+GGI+ FV ++ Sbjct: 180 KSEILQKRLKELAYLNPNITIKF--ENENDGVKEVYHYEGGIKDFVKTLTNKECISDVIY 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +++A+ ++ GY E VL F NNI +GGTH SG ++ L++ + +Y+ Sbjct: 238 FTDHYSDEEKALDVEVALCYDSGYDEKVLSFVNNIRTPEGGTHESGFKAGLSKAVINYIN 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + + GDD +EG +++S+KM +P+F QTK KL SS V+ + + + L+ Sbjct: 298 KNIKLK-ENLKITGDDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPITQKVTYEYLT 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + EE+P EAK+I +K + A+ R AA+RARDLTR++ + + +LPGKLADC +DP +S Sbjct: 357 RFFEENPNEAKLIAEKAIAAARSRIAAKRARDLTRKQAKVGVGTLPGKLADCQSKDPVES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR R QAILPLRGKILN +++ K LSS+EI +ITALGTGI Sbjct: 417 ELYLVEGDSAGGSAKQGRDRVFQAILPLRGKILNTQKSTDAKALSSEEIKNIITALGTGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI+K+RY+KIIIMTDADVDG+HI+TL++TFFF + +I NG+LYI +PPLY Sbjct: 477 GED-FDIDKIRYNKIIIMTDADVDGSHIQTLIMTFFFNHLREVIENGYLYIAQPPLYRYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK +Y+KD++ L ++LI Q ++ + K +L+ + A L+ Sbjct: 536 KGKIEKYLKDDKELNEFLIEQGINSIDI------TGVGKPELKELLKYAALYKLLLDRLS 589 Query: 606 PNHD-KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + I + +G L L + I K + ++ N Sbjct: 590 KRFNIPEVIRFLIENGNL---------EELPKFLESLGFNIISKHDDHYYIQTN------ 634 Query: 665 KRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLD 724 RG++E ++ + + +++E I LLD Sbjct: 635 ----RGLEE-ITIDDKLLNHQLFVEAKKVYQKLQEY-----------KDIIDRDYLELLD 678 Query: 725 TIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + RKG +QRYKGLGEMN QLWETT+NP+ R L++V + DA A + F MG E Sbjct: 679 EVVEKARKGAHIQRYKGLGEMNPEQLWETTMNPENRVLIQVTMDDAQNAAEKFELFMGSE 738 Query: 785 VEPRREFIQENSLPS-ALDI 803 V PRREFIQ N+ +D+ Sbjct: 739 VGPRREFIQANAKEVENIDV 758 >gi|284041476|ref|YP_003391816.1| DNA gyrase B subunit [Conexibacter woesei DSM 14684] gi|283945697|gb|ADB48441.1| DNA gyrase, B subunit [Conexibacter woesei DSM 14684] Length = 808 Score = 758 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 345/805 (42%), Positives = 491/805 (60%), Gaps = 10/805 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + SYDA I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L G+A Sbjct: 10 KPTPSPSYDAQDITVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEVVDNSVDEALAGHAS 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLH 121 + VT++ D S TV DNGRGIP + ++EG A EV++T LHAGGKF YKVSGGLH Sbjct: 69 AVDVTIHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLH 128 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L++ I R+G + ++ G L G A ++TGT +TFLP +I Sbjct: 129 GVGVSVVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLER-GEATSETGTTITFLPDDEI 187 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 DF++ TL+ RLRE +FL ++ISL D+R E R + Y GGI+ FV+YL+ +K Sbjct: 188 MESLDFDFTTLEERLRETAFLTRGLRISLTDER-GERRHVEFQYDGGIQDFVAYLNENKD 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + + D ++++AM+WN Y E+V F NNI +GG+HLSG RSALTR I Sbjct: 247 PVQRKIVYFSSESDEGAVEVAMQWNSSYQESVFSFANNINTHEGGSHLSGFRSALTRTIN 306 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + K+ ++ G+D REG T+V+S K+ +P+F QTK KL + ++ ES VN Sbjct: 307 KYAREKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVN 366 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 GL +LEE+P +A+ ++ K + A+ R AAR+ARDLTRRK L+ + LPGKLADCS +D Sbjct: 367 KGLDEFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKD 426 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+F+VEGDSAGGSAKQGR R QAILPLRGKILNVERAR DK+L + E+ LITA+ Sbjct: 427 PALSEIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAI 486 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG+ +D FD+ K RYHKII+MTDADVDGAHIRTL+LT FR+M LI GF+YI KPPL Sbjct: 487 GTGV-RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPL 545 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV-ISKNDLRNFIDDALKIDKL 600 Y + +GK+ +Y++ + LE+ L++ L +++ + F + Sbjct: 546 YKLKQGKNERYIEKDSELEEMLLSDKLERFSIFDRTGAETRLTEARWKRFTRLLKQYGGW 605 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 ++ SG+ E ++ + + A E + + Sbjct: 606 ASALRALSSHDVVDFLHESGILEANVTDEGALARLLRQPEA-DGAAFSVELVGEDEVELT 664 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI-EENYLTILSLICNGDKIKITGP 719 ++R G + + + + + +++ + + + Sbjct: 665 VRSIERKT-GHARTRHVRRAMLQANEYRQLARVHDQLVQAVGTPPFDIRLGDHRETAVSF 723 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L + + +G+ + R+KGLGEMNA QL ETT++P TR+L RV + DA+ A+ +FS Sbjct: 724 DELRSRVMDMAGRGVEINRFKGLGEMNAEQLRETTMDPATRTLARVTMEDAAAAERVFSM 783 Query: 780 LMGDEVEPRREFIQENS-LPSALDI 803 LMGD+VEPRR FI+EN+ L + LD+ Sbjct: 784 LMGDQVEPRRNFIEENASLVTNLDV 808 >gi|254797071|ref|YP_003081909.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois] gi|254590317|gb|ACT69679.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois] Length = 758 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 381/777 (49%), Positives = 521/777 (67%), Gaps = 22/777 (2%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLH M+YEV+DN++DESL GY I V +++DGS V DNGRG+PTD+H Sbjct: 1 MYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAIEVVIDVDGSILVKDNGRGMPTDMH- 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EG+SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS WLKL I R+G I+ Sbjct: 60 GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVGVSVVNALSDWLKLTIYRDGKIHFAE 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF-NYDTLQHRLRELSFLNSSVQI 208 F NG L VTG G+ TGT V FLPS F ++ TL++R RELSFLN +++ Sbjct: 120 FRNGETVRSLSVTGECGDKTGTLVHFLPSRSTFKNTTEVSFSTLENRFRELSFLNPGLEV 179 Query: 209 SLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 SL+D ++ ++ F GG E FV+YLDR K+P+ SPIRI G D+I +D++++WND Sbjct: 180 SLLDMRKGGSTGKVIFFSSGGTEEFVAYLDRSKQPIHPSPIRILGGVDSIVMDISIQWND 239 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 Y+ENVLCFTNNI QKDGGTHL+ LRSA+TR + +Y+ K KK+K V G+D REG T Sbjct: 240 SYYENVLCFTNNIKQKDGGTHLAALRSAMTRVMHNYIVKENLIKKEKVVVSGEDVREGLT 299 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 ++LS+K+PDP+FSSQTKEKL+SSEV+ V+E V+D L++WLEE+P A++I KKV+++++ Sbjct: 300 AILSVKLPDPKFSSQTKEKLISSEVKPVIEKVVSDALASWLEENPSAARVIAKKVVESAL 359 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R+AA++ARDLTRRKG L+I +LPGKLADC E+ P+ SEL +VEGDSAGGSAKQGR R+ Sbjct: 360 AREAAKKARDLTRRKGGLEITTLPGKLADCQEKSPELSELLIVEGDSAGGSAKQGRDRKT 419 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QA+LPLRGKILNVE+ RF K++ S EIG LI ALGT IG++ F+I+K+RYHK+IIMTDAD Sbjct: 420 QAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAALGTSIGEEEFNIDKIRYHKVIIMTDAD 479 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDG HIRTLLLTFFFR ++ G+LYI + PLY + R + Y++D+ +LE+YL+ + Sbjct: 480 VDGLHIRTLLLTFFFRYARPIVERGYLYIAQTPLYKVMRKGTDVYLRDDAALEEYLLERI 539 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + + V + L+ + L + K+++ F +E + G Sbjct: 540 IKGKEL-IGANGEVYTGQALKRIVQQCLVLSKILEKFDYRIPLEILEVVFLCG------- 591 Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687 + LA R +A S +W +S + +R +G++ ++ + S Sbjct: 592 ---ETADPQLLAER---VALTSFGTWTVVREDSSLFFERTFQGLRNRYEYSPLFV-SEDI 644 Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 + I + + + N + + D S R G+ +QR+KGLGEMN Sbjct: 645 EKMAKIREAISDIFYPGFARFNNKEYYSVLAFVRDAD---SAARAGMVLQRFKGLGEMNP 701 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLW TTL+P R++ +V I +A+ AD + S LMGD V PRR+FI N+L + +D+ Sbjct: 702 EQLWSTTLDPSNRTIFKVTIEEAAVADQMCSMLMGDAVGPRRDFIVNNALNASNIDV 758 >gi|187735779|ref|YP_001877891.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425831|gb|ACD05110.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835] Length = 852 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 358/845 (42%), Positives = 491/845 (58%), Gaps = 52/845 (6%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Y A I L+GL+AV+KRP MYIGD D E GLHH ++EVLDN+IDE L GY Sbjct: 15 TTAQHEYGAAQIDKLEGLEAVRKRPGMYIGDPD-ERGLHHCVFEVLDNSIDEHLAGYCSK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + +++DGS ++ DNGRGIP D+H + GI A E+++T LHAGGKF Q +YK SGGLHGV Sbjct: 74 IDIVIHVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182 G VNALS W K ++R+G Y++ F G PL GS + TGT +TF P + IF Sbjct: 134 GAKCVNALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIF 193 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F +D L RLREL+FLN + I LID+R R T FYK GI FV L +K+ Sbjct: 194 TDTTEFKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKE 253 Query: 242 PLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 + + PI I G R D++ +D+ ++N+ Y N+LCF N+I DGGTHL Sbjct: 254 VINEDPISISGVRKVEVEYDGKKMEDDVLVDVVFQYNNTYETNILCFANSIYNGDGGTHL 313 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG R ALTR I Y + + K+ S+ G+D REG +V+S+KMP+PRFSSQTK+KLV+ Sbjct: 314 SGFRGALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVN 373 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 +E+ VV + V + + + EE+P AK I++K + A A R T RK L I Sbjct: 374 TEIEGVVGNVVYEEIKTYFEENPAMAKKIIEKSITA-ARAREAARKARETVRKSALSIGG 432 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADCS+RDP K ELF+VEGDSAGGSAK GR R QAILPLRGK+LNVE+AR DK L Sbjct: 433 LPGKLADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKAL 492 Query: 470 SSQEIGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 S+EI +ITA+G GIG+ F ++++RYHKIIIMTDADVDGAHIRTLLLTFF R M Sbjct: 493 GSKEIQNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHM 552 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 P L+ G+LYI + PLY I R K +YV+D+ +L LI ++++ F D S Sbjct: 553 PQLVRAGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELAVNDVTLRFADGSRSFSPE 612 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF- 644 +L ++ + + + + +E + N E + + L F Sbjct: 613 ELSAILETLVNLQRYTESMQAQGGS--LEDLLSHRETNGEFPEFLVKVRCGNEEEILFFH 670 Query: 645 -------------------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 + E + + I + E + + Sbjct: 671 DMEALTAFSEENRDLFIFGTPSEEELLENPLPEREGPSRRSITHELHEAKAITRALARLA 730 Query: 686 GSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKG 741 I N I + L+ GDK K+T +L+++ SIG++G+ + R+KG Sbjct: 731 E---LGIPGNMIVSMDTPLFELVEGEGDKEKVTPLFSVMDILESVISIGKRGVEITRFKG 787 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS 799 LGEM+A L++TT++P+ R LLRV + D A +AD++F+ LMGD VEPR+ +I +++L Sbjct: 788 LGEMDAKDLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDVVEPRKNYIVDHALNV 847 Query: 800 -ALDI 803 LDI Sbjct: 848 RNLDI 852 >gi|149194734|ref|ZP_01871829.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2] gi|149135157|gb|EDM23638.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2] Length = 758 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 332/798 (41%), Positives = 467/798 (58%), Gaps = 43/798 (5%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A++I++LKGL+AV+KRP MYIGDT E GLHH+IYEV+DNAIDE++ GYA I V Sbjct: 2 AKYGAENIKVLKGLEAVRKRPGMYIGDTS-EKGLHHLIYEVVDNAIDEAMAGYATEIKVK 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS T+SDNGRGIP D+H EE I AA V++T LHAGGKF+ K+YKVSGGLHGVGVSV Sbjct: 61 INKDGSVTISDNGRGIPVDIHPEEKIPAATVVLTVLHAGGKFDNKTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L + IKR+G IY+ F G L V G+ N TGT + F P +IF +F Sbjct: 121 VNALSKKLIMTIKRDGKIYKQEFERGKPITDLEVIGNT-NRTGTTIQFWPDEEIFDSVEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 LQ RL+EL++LN ++ I D+R ++ Sbjct: 180 KPQILQKRLKELAYLNPNITIYFEDERHNIKEVYHFEGGIKDFVKTLTNKELITDVIYYN 239 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + ++ +++A+ ++ GY E VL F NNI DGGTH SG ++ L++ I +Y+ K+ Sbjct: 240 KQYSDEEKSLDVEVALCYDSGYDEKVLSFVNNIRTPDGGTHESGFKAGLSKAIINYINKN 299 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 KD V DD +EG +++S+KM +P+F QTK KL SS V+ +V+ + L+ + Sbjct: 300 -MKLKDNIKVTADDVKEGLNAIVSVKMSEPQFEGQTKGKLGSSYVKPIVQKVTYEYLTRF 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EE+P AKII +K + A+ R AA++AR+LTR++ + + +LPGKLADC ++P ++EL Sbjct: 359 FEENPNTAKIIAEKAIAAARSRIAAKKARELTRKQAKIGVGTLPGKLADCQTKNPDEAEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 +LVEGDSAGGSAKQGR R QAILPLRGKILN +++ K LSS+EI +ITALGTGIG Sbjct: 419 YLVEGDSAGGSAKQGRDRYFQAILPLRGKILNTQKSTDAKALSSEEIKNIITALGTGIGS 478 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FD +K+RY KIIIMTDADVDG+HI+TL++TFFF + LI G+LYI +PPLY +G Sbjct: 479 D-FDADKVRYKKIIIMTDADVDGSHIQTLIMTFFFNHLRELIERGYLYIAQPPLYRYKKG 537 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K +Y+KD++ L ++LI Q ++ + K +L+ + +A L+ Sbjct: 538 KIEKYLKDDKELNEFLIEQGINSIEI------EGVGKLELKELLKNAAYYKILLDKLTKR 591 Query: 608 HD-KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + I + G + L L I K + ++ N + Sbjct: 592 FNIPEIIRFLIEDGNID---------KLEEYLKKFGFNIISKHDNHYYIQTNRGLEEITI 642 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 + + +E ++ +YK + LLD + Sbjct: 643 DDKLLNHPLFIEAKKVYEKLKEYKDLVKG----------------------DYLELLDEV 680 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 R G +QRYKGLGEMN QLW+TT++P+ R L++V + DA A F MG EV Sbjct: 681 IKKARSGAHIQRYKGLGEMNPDQLWDTTMDPENRVLIQVTLEDAENAAKQFELFMGSEVG 740 Query: 787 PRREFIQENSLPS-ALDI 803 PRRE+IQ N+ +D+ Sbjct: 741 PRREYIQANAKEVENIDV 758 >gi|149196297|ref|ZP_01873352.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155] gi|149140558|gb|EDM28956.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155] Length = 838 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 341/844 (40%), Positives = 513/844 (60%), Gaps = 47/844 (5%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ +N Y ADSI ++KGL+AV+KRPSMYIGDT+ E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEQENQAGEYGADSISVMKGLEAVRKRPSMYIGDTN-ERGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ + ITV L++D S TV D+GRGIP ++H+EEGI A E+++T+LHAGGKF++ SYKVSG Sbjct: 60 GHCNNITVKLHIDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS W+++++ R+ ++ + F G+ + L G N TGTEV F P Sbjct: 120 GLHGVGVSCVNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHT-NITGTEVIFKPD 178 Query: 179 SDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-PREITMFYKGGIEAFVSYL 236 +IF+ + +D L RLREL+FLN + I+ ID+R+ + R T ++ GGI FV +L Sbjct: 179 FEIFTETLIYKWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + K + + +D ++ D++ +++DG+ EN+ + NNI +GGTHL+G ++AL Sbjct: 239 NDGKTVVT-DTVTFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T I SY+ K+ K++++V G D REG T+++S+K+P+P+F QTK KL ++EVRS+V Sbjct: 298 TASINSYM-KNDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIV 356 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + V+ + +LEE+P AK++V+K L A+ AA RAR L R+ VL+ + GKL+ Sbjct: 357 RAIVSTSFNEFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSG 416 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS ++P + E+F+VEGDSAGGSAKQGR+ E QAILPLRGK++NVE+AR DK+ ++ EIG+ Sbjct: 417 CSSKNPDECEIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGS 476 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI+A+G G+G + FD+ K+RY KI+IMTDADVDG+HI TLLLTFFFRQM LI G++Y+ Sbjct: 477 LISAIGCGVGNE-FDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYV 535 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + R K +Y+K++ L ++L+ + + +S + + + Sbjct: 536 AQPPLYKVVRRKREEYIKNDAMLNNFLLELGVDGITLENKLAGNTLSPRETNEILALIKR 595 Query: 597 IDKLIKDFYPNHD--KTFIEQAVISGVF--------------------NCESDQEINVSL 634 + K + +T+++ + G + E +I Sbjct: 596 TLAVGKGLENHGVTLETYLQHVLEDGSLPIARVGVREDDGTYSIYFPTSQEELAQIIDDA 655 Query: 635 ASKLANRLNFIAEKSEKS------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 +L + F+ +E + + E L ++ + Sbjct: 656 TERLKPVITFVDTDAESETIEGEEVLEGELVEEEAEEVGIHPSIEVNELHEKTLIEEIRE 715 Query: 689 YKRIFSNRIEENYLTILSLIC-------NGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 S ++ +L + I L + I G +G+ +QRYKG Sbjct: 716 KLETVSLTLQHFLEPEDALAEPIFNLTDGNNDTPIFTLIQLFEAIKDEGSQGLKLQRYKG 775 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS--LPS 799 LGEMNA QLWETT++P R LL+V + DA +A+ +FS LMGD VEPRR FI++ S L Sbjct: 776 LGEMNADQLWETTMDPTRRDLLQVTMEDAVEAERMFSLLMGDVVEPRRHFIEKYSTTLK- 834 Query: 800 ALDI 803 LD+ Sbjct: 835 ELDV 838 >gi|237751289|ref|ZP_04581769.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879] gi|229372655|gb|EEO23046.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879] Length = 775 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 326/801 (40%), Positives = 477/801 (59%), Gaps = 28/801 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Y AD+I++LKGL+AV+KRP MYIGDT+ +GLHHMIYEV+DN+IDE++ G+ Sbjct: 2 ENTTKEYLADNIKVLKGLEAVRKRPGMYIGDTN-TNGLHHMIYEVVDNSIDEAMAGFCKN 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +TL GS + D+GRGIP D+H E + AA V++T LHAGGKF++ +YKVSGGLHGV Sbjct: 61 IKITLTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS L + I + IY+ F GI L + G GT + F P +I Sbjct: 121 GVSVVNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETK-KHGTTIEFFPDPEIME 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + +F+ + L R +E+++L ++I D+R +GG+ F+ +++ Sbjct: 180 ITEFDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHF--EGGLSQFIEDINKKTLIT 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + I++A+ +N+GY E VL F NNI DGGTH +G R+ L+R I +Y Sbjct: 238 QILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +E + +++ V+GDD REG ++++ K+ DP+F QTK KL SS V+ +V+ + Sbjct: 298 IEANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEK 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S + EE+P +AK+I++KVL A+ R+AA+RARDLTR+ + +++LPGK ADC +DP Sbjct: 358 ISKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPS 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R D +L S+EI +ITA G Sbjct: 418 ECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGC 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D F+ KLRYHKIIIMTDADVDG+HI+TLL+TFF+R L+ G++YI +PPLY Sbjct: 478 GIG-DEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYK 536 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 R K Y+KD+++L D+LI + I N+L + +L+ D Sbjct: 537 YKRNKKEVYLKDDKALSDFLIENGIEHFNF------KGIGHNELLQILKIIAHYRQLVND 590 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 + ++ + ++ + + ++ ++ S L K I+ I Sbjct: 591 LERRYSVQYVLRYLVENELDTHDLESLSKNIESYL-------LSKQYNVLKKHIDEVSIT 643 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + + + + K + +I E L L K ITG L Sbjct: 644 LNAQTNLGITEIKITRNLFHDISFKECKRIYQKITERELEFL-----EGKDIITG----L 694 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + I RK + RYKGLGEMN +LWETT++P R+L++VKI D AD++F+ MGD Sbjct: 695 EEIEEATRKKGDISRYKGLGEMNKEELWETTMSPQNRTLVQVKIEDDEMADEMFNIFMGD 754 Query: 784 EVEPRREFIQENSLPS-ALDI 803 EVEPRR++IQ+++ LD+ Sbjct: 755 EVEPRRQYIQKHARDVKNLDV 775 >gi|315453774|ref|YP_004074044.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179] gi|315132826|emb|CBY83454.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179] Length = 766 Score = 748 bits (1931), Expect = 0.0, Method: Composition-based stats. Identities = 340/798 (42%), Positives = 485/798 (60%), Gaps = 37/798 (4%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY D I++LKGL+AV+KRP MYIGDT G +GLHHM+YEV+DNA+DES+ G+ D I VTL Sbjct: 3 SYMGDKIKVLKGLEAVRKRPGMYIGDT-GVNGLHHMVYEVVDNAVDESMAGFCDHIKVTL 61 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + GSC V DNGRGIP D+H EGI AA V++T LHAGGKF+Q+SYKVSGGLHGVGVSVV Sbjct: 62 SQYGSCIVEDNGRGIPVDIHPTEGIPAATVVLTILHAGGKFDQESYKVSGGLHGVGVSVV 121 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS L + I REG IY F GI PL V G+ GT + F P +I V F+ Sbjct: 122 NALSIKLIMTIYREGQIYRQEFEKGIPTTPLEVVGTTK-KRGTTIEFFPDPEIMEVVQFD 180 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 L+ R +E+++LN+ +I+L P + Y+ G++ F+ + PL+ I Sbjct: 181 SGVLKRRFQEMAYLNN--KITLEFHDQPAQVHESYHYQDGLKQFIIDTQK--TPLISEII 236 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + + +++A+ +N+ Y E F NNI +GGTH SG + L++ I SY+++S Sbjct: 237 AFSAQVEGMEVEVALAYNESYEEQTFSFVNNIRTIEGGTHESGFKMGLSKAILSYIQESN 296 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 ++ SV+ +D REG ++++S+K+ DP+F QTK KL SS VR ++ V + ++ + Sbjct: 297 --SREGSSVVQEDVREGLSAIISLKLLDPQFEGQTKAKLGSSFVRPIIAKLVYEKVAKYF 354 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE+P AK IV+KVL A+ R+AA++AR++TR+K L + +LPGKLADC +DPK+ EL+ Sbjct: 355 EENPSIAKAIVQKVLLAARGREAAKKAREITRKKDSLSVGTLPGKLADCQSKDPKECELY 414 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQGR R QAILPLRGKILNVE+A K+L S+EI +ITA G G+G++ Sbjct: 415 LVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKAHLGKILKSEEIKNMITAFGCGVGKE 474 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F++ KLRYHKIIIMTDADVDG+HI+TLL+TFFFR + LI G +YI +PPLY + K Sbjct: 475 -FNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFFRHLKPLIEYGHVYIAQPPLYRFKKKK 533 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 +Y++DE L +LI + + +NDL + + ++++ Sbjct: 534 IERYLRDERELNHFLIEHGIDSMEI------EGMGRNDLLDLLKTLSAYRSILQELEKRP 587 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK--SEKSWHGSINNSDILVKR 666 + + ++ S + L + L I K E+ H + + LV+ Sbjct: 588 ILMEVLRYLVEHDIEGLSFPTLAERLEALLQGLQYRILTKQVFEQGAHFFVQTALGLVEI 647 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 ++E + + + +K I+ L + +L L + Sbjct: 648 ---NIEETLLQDALFL---EAKALFARIAEIDTEVLGMDAL-------------DFLHKV 688 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + G +QRYKGLGEMN QLWETT+ + R+LLRV + D ++AD+ F+ LMGDEVE Sbjct: 689 EQSAKTGAYIQRYKGLGEMNPDQLWETTMALENRALLRVALEDEAKADEAFNLLMGDEVE 748 Query: 787 PRREFIQENSLPSA-LDI 803 PRRE+I ++ LD+ Sbjct: 749 PRREYIHTHAKDVKHLDV 766 >gi|322378945|ref|ZP_08053359.1| DNA gyrase subunit B [Helicobacter suis HS1] gi|321148621|gb|EFX43107.1| DNA gyrase subunit B [Helicobacter suis HS1] Length = 767 Score = 747 bits (1930), Expect = 0.0, Method: Composition-based stats. Identities = 340/796 (42%), Positives = 492/796 (61%), Gaps = 34/796 (4%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y D I++LKGL+ V+KRP MYIGDT+ +GLHHM+YEV+DN+IDES+ G+ I +TL+ Sbjct: 4 YMGDKIKVLKGLEGVRKRPGMYIGDTN-INGLHHMVYEVVDNSIDESMAGFCTDIKITLS 62 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 GSC V DNGRGIP D+H EGI+AA V++T LHAGGKF+++SYKVSGGLHGVGVSVVN Sbjct: 63 QYGSCIVEDNGRGIPVDIHPTEGIAAATVVLTTLHAGGKFDKESYKVSGGLHGVGVSVVN 122 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS L + IKREG IY F GI + L TG+ GT + F P I V F+ Sbjct: 123 ALSKRLLMTIKREGKIYTQEFAKGIPLDTLKQTGTTK-QRGTCIEFFPDESIMEVVVFDA 181 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 L+ R +E+++LN +V I+ D+ + E Y+ G++ F+ D +K PL+ I Sbjct: 182 AILKKRFKEMAYLNHNVTITFCDQPN--NIEEVYHYEEGLKQFIL--DTNKAPLLSDVIT 237 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 G +++ +++A+ +N+GY E + F NNI +GGTH +G R L+R I +Y++++ Sbjct: 238 FNGQAEDMEVEVALAYNEGYSEQMFSFVNNIRTPEGGTHETGFRMGLSRAILNYIQQNAS 297 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 +++ + VI +D +EG +V+S K+ +P+F QTK KL SS VR +V V + ++ + E Sbjct: 298 AREKEAGVIQEDIKEGLVAVVSTKILEPQFEGQTKAKLGSSFVRPIVAKLVYEKMAQFFE 357 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429 E+P AK I++K L A+ R+AA++AR+LTR+K L + +LPGKLADC +DPK+SE++L Sbjct: 358 ENPSVAKAIMQKALLAAKGREAAKKARELTRKKDNLSVGTLPGKLADCQSKDPKESEIYL 417 Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489 VEGDSAGGSAKQGR R QAILPLRGKILNVE++ K+L S+EI +ITA G G+G++ Sbjct: 418 VEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKSHLSKILKSEEIKNMITAFGCGVGEE- 476 Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 F++ KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI NG +YI +PPLY + K Sbjct: 477 FNLEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLKPLIANGHVYIAQPPLYRFKKKKI 536 Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN-H 608 +Y+KDE+ L +LI + I ++DL + ++K+ Sbjct: 537 EKYLKDEKELNHFLIEHGIDSAQI------EGIGRSDLLALLKTLSAYRFVLKELEKRPL 590 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA 668 + V S + LA+K+ + L I H ++ S + Sbjct: 591 MPEVLRYLVESP------QRLSLEVLAAKIHDLLEKIH--CHVLSHQILDQSLHFFVQTK 642 Query: 669 RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS 728 G+ E +++ + + +I+E L+ L++ L++I Sbjct: 643 TGLVE-LLIDEALFSDPLFLEAKALVQKIQEFDLSCLNM----------DALDFLESIEE 691 Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788 ++G +QRYKGLGEMN QLWETT++ R+LLRV + D A + F+ LMGDEVEPR Sbjct: 692 RAKQGAYIQRYKGLGEMNPEQLWETTMSAANRNLLRVSLEDEQSAHEAFNLLMGDEVEPR 751 Query: 789 REFIQENSLPSA-LDI 803 R++IQ ++ LDI Sbjct: 752 RDYIQAHARDVKHLDI 767 >gi|171913703|ref|ZP_02929173.1| DNA gyrase subunit B [Verrucomicrobium spinosum DSM 4136] Length = 864 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 354/849 (41%), Positives = 494/849 (58%), Gaps = 54/849 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N +Y A+ I L+GL+AV+KRP MYIGD D E GLHH ++EVLDN+IDE L G+ ITV Sbjct: 18 NQAYGAEQIDKLEGLEAVRKRPGMYIGDPD-ERGLHHCVFEVLDNSIDEHLAGFCKTITV 76 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGSC+V D+GRGIP ++H + G+ E+++T LHAGGKF Q +YK SGGLHGVG Sbjct: 77 TIHSDGSCSVEDDGRGIPVEIHPKFGVPTVELVLTNLHAGGKFGQGAYKYSGGLHGVGAK 136 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS- 183 VNALS W K + R G + +SF G PL V G TGT++TF P ++IF+ Sbjct: 137 CVNALSEWFKAEVYRGGKAHAISFSRGKTTEPLTVVGDLEDPTRTGTKITFFPDAEIFTA 196 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F ++ L +RLREL+FLN V I L D+R RE T FYK G+ FV L +K + Sbjct: 197 TTEFRFELLVNRLRELAFLNPGVIIVLKDERPEPIREETFFYKFGVVEFVVQLGDNKVLV 256 Query: 244 MQSPIRIQGSRD--------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 P+ ++G R +D +++ND Y E +LCF N+IP DGGTHLSG RSA Sbjct: 257 HDKPVVLRGQRFIEVEDKQDICFVDCVLQYNDSYSEQMLCFANSIPNPDGGTHLSGFRSA 316 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I + + + K+ + G+DCREG +LS+K+P+PRF+SQTK KLV+ EV Sbjct: 317 MTRAINQFAKANKMVKESDPPITGEDCREGMVCILSVKLPNPRFNSQTKGKLVNGEVEGA 376 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V S V +G+ +L+E+P AK I+ + + A R T RK V+ LPGKLA Sbjct: 377 VSSVVYEGMQQFLDENPGVAKRIID-KILTAARAREAARKARETVRKSVMTGGGLPGKLA 435 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC+ERDP KSELF+VEGDSAGGSAK GR R QAILPLRGK++NVE+AR DK L ++EI Sbjct: 436 DCTERDPAKSELFIVEGDSAGGSAKVGRDRRVQAILPLRGKLINVEKARLDKALQNREIQ 495 Query: 476 TLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +ITA+GTGIG + SF + K RYHKIIIMTDADVDG+HIRTLLLTFF RQMP L+ Sbjct: 496 AMITAIGTGIGDGADEGSFRLEKARYHKIIIMTDADVDGSHIRTLLLTFFCRQMPELVRR 555 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS---KGVISKNDLR 588 G++YI +PPLY + R K +YV+D+ L LI+ E ++ K+ L+ Sbjct: 556 GYIYIAQPPLYLVKRRKREEYVQDDGELNHILIDLGAEEVRLRVLTDSGENPMMEKDKLK 615 Query: 589 NFID---DALKIDKLIKDFYPNHDKTFIEQAVISGVFNC-----ESDQEINVSLASKLAN 640 +D + +++I+ + +K + +G E VS Sbjct: 616 PILDLLSRLSRFNEVIRRNGGDFEKYIQCRDPETGAMPAFLVRIRDGNEEMVSYFLGDRE 675 Query: 641 RLNFIAEKSEKSWHGSINNSDILV--------------------KRIARGVQEQFVLEGS 680 F ++ G + +V R AR V+ Sbjct: 676 LSEFAHANADLGLFGRSIDPPPVVAGTEAAEPPVAEKPAVKDGRTRRARLVEIHEANSIK 735 Query: 681 SIFSFGSKY---KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737 + S+ +S++ + + + N + +L+ + +IGR+G+ ++ Sbjct: 736 KLLGQLSELGLSLDHYSSQDKPLFELVEGEGDNARVHPVFSVPGILEGVMNIGRRGLEIR 795 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA +L+ TT+ TR LLRV++ + +AD +F+ LMGD VEPR+ FI+EN Sbjct: 796 RFKGLGEMNAKELYTTTMEQKTRKLLRVRLNEENEIEADRIFTILMGDIVEPRKIFIEEN 855 Query: 796 SLPS-ALDI 803 +L LD+ Sbjct: 856 ALNVRNLDV 864 >gi|196232356|ref|ZP_03131210.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus Ellin428] gi|196223724|gb|EDY18240.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus Ellin428] Length = 853 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 337/841 (40%), Positives = 480/841 (57%), Gaps = 46/841 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD + LKGL+AV+K+P MYIG TD E LHH + EVLDN++DE L GY I V Sbjct: 15 KTQYTADDLSSLKGLEAVRKKPGMYIGGTD-ERALHHCVSEVLDNSVDEFLAGYCTHIDV 73 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ DGS ++ DNGRGIP D++KEEGI E+++TRLH+GGK+ Q +Y+ SGG HGVG Sbjct: 74 TIHSDGSISIRDNGRGIPVDINKEEGIPGVELVLTRLHSGGKYGQGNYEYSGGTHGVGAK 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSV 184 VNA+S W K+ + R+G I+ MSF G L V N TGT +TF P +IF Sbjct: 134 CVNAVSEWFKVEVTRDGKIHAMSFERGTTKQQLHVIAEVKNNRHTGTLITFKPDPEIFHE 193 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F + + RL +L+++N+ + + +D+R+ R + + + G+E FV+ L +K + Sbjct: 194 TTEFKSERIITRLNDLAYINAPLSFTFLDERTEGARPVQIVHPKGVEDFVARLSENKTLV 253 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G+RD I ++ + +ND Y+E +LC+TN +P DGGTH SG R +LTR I Y Sbjct: 254 HPKPILVKGTRDRIIVEFGLHYNDSYNEQLLCYTNAVPNPDGGTHSSGFRGSLTRAINQY 313 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + + K ++ G+D EG +V+S+K PDPRF SQTK KL+S EV S+V S +G Sbjct: 314 AKNNSLLKDKDPAITGNDVLEGVAAVVSVKHPDPRFESQTKVKLISPEVESIVGSISYEG 373 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +++P K I+ K L A A R T RKG + LPGKLADCSERDP+ Sbjct: 374 LMLHFDQNPGVGKKIIDKCLMA-ARAREAARKARETVRKGAMTGGGLPGKLADCSERDPE 432 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +EL++VEGDSAGGSAKQGR R QAILP++GKI+NVE+AR DK+L + EI TLITA+GT Sbjct: 433 LTELYVVEGDSAGGSAKQGRDRRFQAILPIKGKIINVEKARLDKVLQNTEIQTLITAIGT 492 Query: 484 GIG----------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 GIG + +FDI +LRY +IIIMTDADVDG+HIRTLLLTFF+RQMP L+ G Sbjct: 493 GIGMATSEKEKENEGTFDIKRLRYGRIIIMTDADVDGSHIRTLLLTFFYRQMPELVRGGH 552 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK---NDLRNF 590 +YI PPLY I R K +YV+D+ +L LI + + + +L + Sbjct: 553 VYIACPPLYLIKRKKREEYVEDDAALNRILITLGSEDVKLKNLADGKIFTATQLKELLDL 612 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES---------------DQEINVSLA 635 ++ K + I+ + ++ + +G F D+ Sbjct: 613 LERLAKFSEAIRRHGGDFEQYLARRDSTTGAFPAYMVKVRDGNNESVEYFLDEAAVRGYH 672 Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG-------VQEQFVLEGSSIFSFGSK 688 + F E G + R + E + Sbjct: 673 EDNRDLGLFEDPAPENPVEGEALAEKPVASRKKEEGPVRRARLIELHESDAVQKLVADIA 732 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGLGE 744 K + ++ I LI IT + + IG+KG+S+QR+KGLGE Sbjct: 733 RKGLMIEHFADSDHPIFELIEGEGDKAITHSLFTVPEIHSKVIEIGKKGLSIQRFKGLGE 792 Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 MN QL+ETT++P+ R + RV++ +A +AD +F+ LMGD VEPRR+FI++N+L + LD Sbjct: 793 MNPKQLYETTMDPNKRKMWRVELNEDNAVEADRMFTILMGDVVEPRRQFIEDNALNARLD 852 Query: 803 I 803 + Sbjct: 853 V 853 >gi|269799050|gb|ACZ43803.1| DNA gyrase subunit B [Moritella viscosa] Length = 726 Score = 738 bits (1905), Expect = 0.0, Method: Composition-based stats. Identities = 360/734 (49%), Positives = 482/734 (65%), Gaps = 17/734 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 57 CTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I R G+I++ + +G P+ V G + TGTE+ F PS + Sbjct: 117 HGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV YL+ +K Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y+EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L+ +L E+P EA +V K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI + Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK +Y+KD+ L YL +L I L + ++ KI+ Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIE 594 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651 L+ + K F + + V E D+ + A +L L + Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + ++ G+ + S I + Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG--IANLLEEGAYIKRGE 712 Query: 712 DKIKITGPCSLLDT 725 ++T L+ Sbjct: 713 KSREVTNFVEALNW 726 >gi|330952329|gb|EGH52589.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7] Length = 727 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 365/733 (49%), Positives = 490/733 (66%), Gaps = 13/733 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN---QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 58 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + + TGT++ F PS++ Sbjct: 118 HGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVGES-DTTGTQIHFKPSAE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 177 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 235 TPVNQVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 295 NNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 355 GKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 415 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 475 LGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K Sbjct: 535 LYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKT 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSW 653 +K + + E V E D E + + RL + K+ Sbjct: 595 LKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRE 654 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N V+ I+ G+ S K +I + K Sbjct: 655 DRERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERK 714 Query: 714 IKITGPCSLLDTI 726 +T L + Sbjct: 715 KPVTEFKEALAWL 727 >gi|261838253|gb|ACX98019.1| DNA gyrase subunit B [Helicobacter pylori 51] Length = 773 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K + A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKAILAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ + LD+ Sbjct: 755 EPRRAFIQAHAKDAKQLDV 773 >gi|87308271|ref|ZP_01090412.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645] gi|87288828|gb|EAQ80721.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645] Length = 858 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 324/844 (38%), Positives = 479/844 (56%), Gaps = 51/844 (6%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ NS Y A ++ L L+ V++RPSMYIGD G G HH++YEV+DN+IDE++ + Sbjct: 25 MAK--ANSEYGAGDLEHLSDLEHVRERPSMYIGD-RGARGFHHLVYEVVDNSIDEAMAEF 81 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKE------EGISAAEVIMTRLHAGGKFNQKSY 114 A ITVT++ D S TV D+GRGIP +LH + +S E +MT L GGKF++ +Y Sbjct: 82 ASAITVTIHNDNSVTVEDDGRGIPVELHPQLTEQVGRDVSTLEGVMTVLKFGGKFSKGAY 141 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 + SGGLHGVGV+VVN LS W ++ + R+G+I++ + G+ P+ G+ GT+ + Sbjct: 142 QTSGGLHGVGVTVVNFLSEWCEVEVHRDGSIWQQEYQRGVPQGPIRKGGATK-KRGTKTS 200 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P S IF+V FNYDTL RL+EL+FLN V+I D+R+ E Y+ GI +V Sbjct: 201 FKPDSQIFNVSKFNYDTLYKRLQELAFLNRGVKIIFKDERNDEGG--EFQYERGIVEYVE 258 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+R L I ++G + + D+A+++++ Y EN+ F NNI +GGTH+SG ++ Sbjct: 259 HLNRASTALHSEVISLEGISEGVGFDIALQYSEEYTENLHSFVNNINTHEGGTHVSGFKT 318 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 A+TR + +Y +K ++ GDD REG T V+S+++P+P+F QTK KL +SEV Sbjct: 319 AMTRTLNNYAKKESLL--KDLTLAGDDFREGLTCVISLRVPNPQFEGQTKTKLGNSEVEG 376 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGK 413 +V S V + L +LEEHP K+I++K + AS R+AAR+AR++ R RK L LPGK Sbjct: 377 IVNSAVGEFLGKYLEEHPKIGKLIIRKAILASQAREAARKAREMMRSRKNALGGGGLPGK 436 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DC RD + EL+LVEGDSAGGSA+ GR RE QAILPLRGKI+N ++R DK+L+++E Sbjct: 437 LRDCISRDMEICELYLVEGDSAGGSAEGGRLREFQAILPLRGKIINAYKSREDKVLANEE 496 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + ++I A+G GIG++ K RY+K+IIMTDADVDG+HIRTLLL FF+RQM SL+ G Sbjct: 497 VQSMIQAIGAGIGEEQDIH-KRRYNKVIIMTDADVDGSHIRTLLLAFFYRQMYSLVSGGH 555 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +Y+ +PPL+ +TR K + Y++ EE ++ L+ L + +S I +++ Sbjct: 556 VYVAQPPLFRVTRKKQITYIQTEEEMKTRLLENGL-RDASFVDESGREIIGDEMERLCRS 614 Query: 594 ALKIDKLIKDFYPNH---------------------------------DKTFIEQAVISG 620 +++ I K E V G Sbjct: 615 LAALEEAIIALERRGISLKIHAVRQDPVTAKLPVFHLVFGITEEWFTTRKELDEYLVEKG 674 Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + E + A A AE + + + ++ Sbjct: 675 LVTESQSDEPAEAPADGEAAVSGEEAETNSTDKVEENGHPAEIPHITELHEVRTINIQLD 734 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + G + + + L + I L+ I + G KG + R+K Sbjct: 735 ELNGMGFDIQSLIPQERTGLQESRYKLRRGESESGIEDLRGLVSAIRAFGEKGQQITRFK 794 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA +L ETTL+P R+LL+V + D S ADD+F LMGD+VEPRREFI++++L Sbjct: 795 GLGEMNAEELRETTLDPANRTLLKVTMEDLSAADDMFRVLMGDKVEPRREFIEKHALDVR 854 Query: 800 ALDI 803 LD+ Sbjct: 855 NLDV 858 >gi|261839663|gb|ACX99428.1| DNA gyrase subunit B [Helicobacter pylori 52] Length = 773 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLATKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|288561864|gb|ADC53568.1| DNA gyrase subunit beta [Pseudomonas syringae pv. syringae] Length = 722 Score = 730 bits (1884), Expect = 0.0, Method: Composition-based stats. Identities = 356/725 (49%), Positives = 479/725 (66%), Gaps = 10/725 (1%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87 P MYIGDTD SGLHHM++EV+DN+IDE+L G+ D I++ ++ D S TV DNGRGIP D+ Sbjct: 1 PGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDV 60 Query: 88 HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147 HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L L ++R G I+E Sbjct: 61 HKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWE 120 Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207 ++++G+ P+ + G + + TGT++ F PS++ F F++D L R+RELSFLNS V Sbjct: 121 QTYVHGVPQEPMKIVGES-DSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVG 179 Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 I L D+RS + Y+GG+ AFV YL+ +K P+ + D I +++A++WND Sbjct: 180 IVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWND 237 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 ++EN+LC TNNIPQ+DGGTHL G RSALTR + +Y+E+ +KK K + GDD REG T Sbjct: 238 SFNENLLCSTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLT 297 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +++S+K+PDP+FSSQTK+KLVSSEV++ VE + S +L E+P EAK +V K++DA+ Sbjct: 298 AIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAAR 357 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R+AAR+AR++TRRKG LDIA LPGKLADC E+DP SEL+LVEGDSAGGSAKQGR+R Sbjct: 358 AREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRT 417 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPL+GKILNVE+ARFDKM+SSQE+GTLITALG GIG++ ++I+KLRYH IIIMTDAD Sbjct: 418 QAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDAD 477 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDG+HIRTLLLTFFFRQ+P LI G++YI +PPLY + +GK QY+KD+E++E+Y+ + Sbjct: 478 VDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSA 537 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES- 626 L + +S IS L ++D + K +K + + E V E Sbjct: 538 LEDASLHLSESAPGISGTALEKLVNDFRMVMKTLKRLSRLYPQELTEHFVYLPPITLEQL 597 Query: 627 -DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 D E + + RL + K+ N V+ I+ G+ Sbjct: 598 SDHEGMQAWLALFDARLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYVTFNRD 657 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 S K +I + K + L + + K ++QRYK Sbjct: 658 FFGSNDYKTVTALGAQISTLLEEGAYVQRGERKKPVNEFKEALAWLMAESTKRHTIQRYK 717 Query: 741 GLGEM 745 GLGEM Sbjct: 718 GLGEM 722 >gi|109947377|ref|YP_664605.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba] gi|109714598|emb|CAJ99606.1| DNA gyrase subunit B [Helicobacter acinonychis str. Sheeba] Length = 773 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDAINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP +H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVGIHPTEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G N ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGRIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F + LQ R +E+++LN ++I+ ++++ + T FY+ G++ FV + + Sbjct: 181 EFQANILQKRFKEMAYLNDGLKIAFKEEKT--QLQETYFYEDGLKQFVKDSTKKELLTSV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDGETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +++S+KM +P F QTK KL SS VR++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII KVL A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKVLLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGVNSANI------EGIGKNDLMNLLKVVRHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S S L Sbjct: 590 KRYNLLEILRFLIETKDALTLDMKVLEKSILEKLESLNYQVLRSFV-----TEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|217032914|ref|ZP_03438390.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128] gi|298736181|ref|YP_003728707.1| DNA gyrase, B subunit [Helicobacter pylori B8] gi|216945363|gb|EEC24033.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128] gi|298355371|emb|CBI66243.1| DNA gyrase, B subunit [Helicobacter pylori B8] Length = 773 Score = 728 bits (1879), Expect = 0.0, Method: Composition-based stats. Identities = 335/799 (41%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSTKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETCTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SF+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVVRHYRYTLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ + + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEVLRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHV 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|320103192|ref|YP_004178783.1| DNA topoisomerase type IIA subunit B region 2 domain-containing protein [Isosphaera pallida ATCC 43644] gi|319750474|gb|ADV62234.1| DNA topoisomerase type IIA subunit B region 2 domain protein [Isosphaera pallida ATCC 43644] Length = 889 Score = 727 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 331/870 (38%), Positives = 504/870 (57%), Gaps = 75/870 (8%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y I+ L+G++A++ RP+MYI DT + GLHH+++EV+DN+IDE++ GY I Sbjct: 24 VNSEDYSEAHIRDLEGIEAIRLRPAMYINDTSSQ-GLHHLVFEVVDNSIDEAMAGYCKHI 82 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ DGS +++D+GRGIP + SA E+++T+ H+G KF+ SYKVSGGLHGVG Sbjct: 83 HVRIHPDGSVSITDDGRGIPVGRIAKHDKSALEIVLTKPHSGAKFDHNSYKVSGGLHGVG 142 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 ++VVNALS WL+ ++REG I+ + G+ + + G A TGT + FLP + IF Sbjct: 143 LTVVNALSEWLEAEVRREGKIWRQEYRQGVAQSDVKAVGPAT-TTGTRIHFLPDATIFPS 201 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR-SPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + ++DTL+ RLREL+FLN V I L D+R EP++ T G++ FV YL+R + P+ Sbjct: 202 IELDHDTLEKRLRELAFLNKDVTIRLTDERGEGEPKDQTFPTNTGLKGFVEYLNRAQTPI 261 Query: 244 MQSPI-RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++S+++A+++ND ENV+ + NNI DGGTHL+G R ALT+ + Sbjct: 262 HPVIHLEGHDEEADVSVEVALQYNDSIAENVVTYCNNISTLDGGTHLTGFRLALTKTLGQ 321 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 V+ S K +V G+D REG T+V+++K+ DP+F+S +K KL + EV VV V D Sbjct: 322 MVKTIGSSSKKDLAVSGEDFREGLTAVIAVKVRDPQFASNSKRKLSNPEVEGVVSRIVTD 381 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT-RRKGVLDIASLPGKLADCSERD 421 L +LEE P AK +V+K L A+ R+AAR+AR+L RKGVL LPGKL DC+ +D Sbjct: 382 QLGRFLEETPAIAKRLVQKALLAAEAREAARKARELVRNRKGVLTGGGLPGKLMDCTSQD 441 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 + SELFLVEGDSAGG+A+ GR R QAILPLRGKILNVERAR DK+L ++E+ +ITA+ Sbjct: 442 RESSELFLVEGDSAGGTAEGGRDRLFQAILPLRGKILNVERARLDKVLGNEEVRNIITAV 501 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG+D D +K RY KI++M+DADVDG+HIRTLL+TFF+RQMP L+ G LY+ +PPL Sbjct: 502 GGGIGEDE-DPSKRRYGKIVMMSDADVDGSHIRTLLMTFFYRQMPKLVAEGHLYVAQPPL 560 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD------SKGVISKNDLRNFIDDAL 595 Y I++ K +YV+ E + L++ L+ F D + V+S LR ++ + Sbjct: 561 YMISQRKERRYVQTEAEMHRLLVDLGLAGSELEFLDPPSSPITPRVVSGERLRTLLEIVV 620 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH- 654 +++ ++ F K A+ + + + L R + E E+ +H Sbjct: 621 GLEQGLRAFGKRGIKARDFLALAHPATDPAVNPLAGLLPLYHLKPRPDH-PEDVERWFHT 679 Query: 655 -------------------------------GSINNSDILVKRIARGVQEQFVLEGSSIF 683 + R + + + E ++ Sbjct: 680 ADEWAALNEPARTAEPPPPSTTPSNSQDNAPTATETPSPPSTREHEALAPEELAEVRTLN 739 Query: 684 SFGSKYKRIFSNRIE---------ENYLTILSLICNGDK--------------------I 714 + ++ + F R + ++ + GD Sbjct: 740 KWLARLRDEFGLRADTLLDREVTGDDPPPRFIMRREGDTPTASSETEQDLSNASSPPTGY 799 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +T L + +G +G+ + R+KGLGEM+A QLW+TT++P R+LL+V++ DA+ A+ Sbjct: 800 PLTNLLQLPSLVRRLGERGLKITRFKGLGEMDADQLWDTTMDPARRTLLQVRLEDAAAAN 859 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DLF+ LMGD+VEPRR+FI++++L LD+ Sbjct: 860 DLFTTLMGDDVEPRRDFIEKHALDVKNLDV 889 >gi|317009520|gb|ADU80100.1| DNA gyrase subunit B [Helicobacter pylori India7] Length = 773 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTGEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SF+I KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFEIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHIYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|188527660|ref|YP_001910347.1| DNA gyrase subunit B [Helicobacter pylori Shi470] gi|188143900|gb|ACD48317.1| DNA gyrase subunit B [Helicobacter pylori Shi470] Length = 773 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 339/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F D LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQADILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 --GNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|225165618|ref|ZP_03727428.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] gi|224800132|gb|EEG18551.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] Length = 895 Score = 726 bits (1875), Expect = 0.0, Method: Composition-based stats. Identities = 344/865 (39%), Positives = 470/865 (54%), Gaps = 67/865 (7%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ YDA + LKGL+AV+K+P MYIG TD E LHH + EVLDN++DE L G+ Sbjct: 33 ANQAIEGDYDASKLSQLKGLEAVRKKPGMYIGGTD-ERALHHCVSEVLDNSVDEHLAGHC 91 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V +++DGS ++ DNGRGIP D+++E G+ E+++T LH+GGK+ Q YK SGG H Sbjct: 92 SRIEVNIHVDGSISIRDNGRGIPVDINQESGLPGVELVLTTLHSGGKYGQGGYKFSGGTH 151 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG VNA+S W ++ + R G ++ M F G L V G A TGT +TF P +I Sbjct: 152 GVGAKCVNAVSEWFEVEVSRNGQVHHMKFERGKTVKKLEVIGKA-RGTGTYITFKPDPEI 210 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F + RLREL+FLNS ++I D+R P+ T +YK G+E FV+ L+ K Sbjct: 211 FKETTVFQAARISQRLRELAFLNSGLEIVFTDERPATPKPETYYYKNGVEEFVTQLNTGK 270 Query: 241 KPLMQSPIRIQGSRD--------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 L PIRI I +++ +++ND Y++ VLC+TN I DGGTHLSG Sbjct: 271 NALHPRPIRITREVRSQIDDKPVEIHVEVVLQYNDTYNDQVLCYTNTIHNPDGGTHLSGF 330 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 RSALTR I Y + + K + GDD REG +V+SIK DP+F SQTK KL+S EV Sbjct: 331 RSALTRAINQYAKANNLLKDKDPQITGDDVREGLAAVISIKHSDPKFESQTKVKLLSPEV 390 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 SVV S +GL + E +P K I+ + A R T RKG LPG Sbjct: 391 ESVVGSASYEGLMMYFETNPPVIKRIID-KCLNAARAREAARKARETVRKGAFSGGGLPG 449 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCSERDP E+++VEGDSAGGSAKQGR R QAILPLRGK+LNVE+AR D +L + Sbjct: 450 KLADCSERDPSLCEIYIVEGDSAGGSAKQGRDRRYQAILPLRGKVLNVEKARIDHVLGNA 509 Query: 473 EIGTLITALGTGIGQDS-----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EI T+ITA GTGIG+ F+I K RYHKIIIMTDADVDG+HIRTLLLTF +RQM Sbjct: 510 EIRTMITAFGTGIGEGDDSVGGFNIAKTRYHKIIIMTDADVDGSHIRTLLLTFLYRQMRG 569 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L G++YI +PPLY I R K QYV +++ + L+ + I ++ + Sbjct: 570 LFEAGYVYIAQPPLYKIKRKKREQYVDNDDQMNRILLELGSEDVILTRLRDNLNFNEEQI 629 Query: 588 RNFIDDALKIDKLIKDFYP----------------NHDKTFIEQAVISGVFNCESDQEIN 631 +++ ++KL +I + N E + Sbjct: 630 DQIVENLSALEKLGGSVTRYGASLSDYLDQHDKTTQELPRYIARIREGNQENHEFLHDEA 689 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSINNSDI--------------------------LVK 665 A + + L + S GSI Sbjct: 690 ARYAFEQKHDLIDASASSTLQPDGSITTDLPPATPALDVGRSGEAAASLPPPPPTPVANA 749 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-------CNGDKIKITG 718 R A+ + + E + + RI + + + + + + Sbjct: 750 RTAKRITIHEIFESTEMSKLIRAIARIGLDINQFGTTENARYVLTENAGQKSEVQTPLHS 809 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 P ++ I + GRKG+S+QRYKGLGEMN QL+ETT++P R LL+V + DA++AD LF+ Sbjct: 810 PLDIVAQIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPAKRRLLKVNVADAAKADALFT 869 Query: 779 RLMGDEVEPRREFIQENSLPSA-LD 802 LMGDEV PRR+FI++N+L LD Sbjct: 870 LLMGDEVPPRRQFIEDNALNVQFLD 894 >gi|15645128|ref|NP_207298.1| DNA gyrase subunit B [Helicobacter pylori 26695] gi|2501294|sp|P55992|GYRB_HELPY RecName: Full=DNA gyrase subunit B gi|2313611|gb|AAD07566.1| DNA gyrase, sub B (gyrB) [Helicobacter pylori 26695] Length = 773 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y+ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIG 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|108562902|ref|YP_627218.1| DNA gyrase subunit B [Helicobacter pylori HPAG1] gi|107836675|gb|ABF84544.1| DNA gyrase subunit B [Helicobacter pylori HPAG1] Length = 773 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTSEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|308184282|ref|YP_003928415.1| DNA gyrase subunit B [Helicobacter pylori SJM180] gi|308060202|gb|ADO02098.1| DNA gyrase subunit B [Helicobacter pylori SJM180] Length = 773 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 VAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|15611520|ref|NP_223171.1| DNA gyrase subunit B [Helicobacter pylori J99] gi|6647533|sp|Q9ZLX3|GYRB_HELPJ RecName: Full=DNA gyrase subunit B gi|4154989|gb|AAD06031.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G ++I + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ + + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKDVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|307637178|gb|ADN79628.1| DNA gyrase subunit B [Helicobacter pylori 908] gi|325995767|gb|ADZ51172.1| DNA gyrase subunit B [Helicobacter pylori 2018] gi|325997363|gb|ADZ49571.1| DNA gyrase subunit B [Helicobacter pylori 2017] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSTKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+ FDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QEGFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYTLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ + + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|308063700|gb|ADO05587.1| DNA gyrase subunit B [Helicobacter pylori Sat464] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSVLEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|308182657|ref|YP_003926784.1| DNA gyrase subunit B [Helicobacter pylori PeCan4] gi|308064842|gb|ADO06734.1| DNA gyrase subunit B [Helicobacter pylori PeCan4] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 339/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A ++ + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYVLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317181823|dbj|BAJ59607.1| DNA gyrase subunit B [Helicobacter pylori F57] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317177660|dbj|BAJ55449.1| DNA gyrase subunit B [Helicobacter pylori F16] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN+ ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNNGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++++ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVSLAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHV 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|208434424|ref|YP_002266090.1| DNA gyrase subunit B [Helicobacter pylori G27] gi|208432353|gb|ACI27224.1| DNA gyrase subunit B [Helicobacter pylori G27] Length = 773 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 481/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAEKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G ++I + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRSFV-----TEESLHLHV 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|308061830|gb|ADO03718.1| DNA gyrase subunit B [Helicobacter pylori Cuz20] Length = 773 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 338/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 --GNIKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHV 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|254779478|ref|YP_003057583.1| DNA gyrase subunit B [Helicobacter pylori B38] gi|254001389|emb|CAX29378.1| DNA gyrase subunit B (type II topoisomerase) [Helicobacter pylori B38] Length = 773 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDAINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLHETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317013919|gb|ADU81355.1| DNA gyrase subunit B [Helicobacter pylori Gambia94/24] Length = 773 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNIG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTSEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 IAFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G ++I + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYHYTLLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ + + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEVLRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FTTEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + I L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL------ENKDILSF---LEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAIFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317012319|gb|ADU82927.1| DNA gyrase subunit B [Helicobacter pylori Lithuania75] Length = 773 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 340/799 (42%), Positives = 483/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSTKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FYK G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYKDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS VR++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI KLRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVACHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL ++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLFKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|297379696|gb|ADI34583.1| DNA gyrase, B subunit [Helicobacter pylori v225d] Length = 775 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 338/801 (42%), Positives = 486/801 (60%), Gaps = 32/801 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVIS--GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 ++ I + +I + + D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMDMKILEKSILEKLEGLNYQILRS-----FATEESLHL 644 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + +G+ E F L+ + + ++ E L L + + L Sbjct: 645 HAQTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFL 694 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGD Sbjct: 695 EEVENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGD 754 Query: 784 EVEPRREFIQENSLPSA-LDI 803 EVEPRR FIQ ++ LD+ Sbjct: 755 EVEPRRAFIQAHAKDVKQLDV 775 >gi|332673706|gb|AEE70523.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter pylori 83] Length = 773 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 339/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHETGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS VR++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIKDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317010750|gb|ADU84497.1| DNA gyrase subunit B [Helicobacter pylori SouthAfrica7] Length = 773 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 332/799 (41%), Positives = 481/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QDYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP +H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVGIHPTEKIPACTVVLTMLHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G N ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKNAKESGTTIEFFPDGSVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++I+ ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKIAFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + ++++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTAVEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +++S+KM +P F QTK KL SS R++V V D + Sbjct: 299 HN--IKTKESRPISEDIKEGLVAIVSLKMSEPLFEGQTKSKLGSSYARTLVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+R+AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASRKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL + + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVNI------EGIGKNDLMSLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQVLRSFV-----TEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ + L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMDYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|317180279|dbj|BAJ58065.1| DNA gyrase subunit B [Helicobacter pylori F32] Length = 773 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKLLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHV 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|210134704|ref|YP_002301143.1| DNA gyrase subunit B [Helicobacter pylori P12] gi|210132672|gb|ACJ07663.1| DNA gyrase subunit B [Helicobacter pylori P12] Length = 773 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 482/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTERIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSTKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPI 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKNMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 NN--IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVVRHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSLDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHT 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEAHYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|240142256|ref|YP_002966766.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1] gi|240012200|gb|ACS43425.1| DNA gyrase, subunit B [Methylobacterium extorquens AM1] Length = 816 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 367/820 (44%), Positives = 520/820 (63%), Gaps = 23/820 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + +YDA SIQ+L+GL+AV+KRP MYIGDT+ +G HHM++EV+DN IDE L G+ Sbjct: 1 MPAHQDPGAYDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGH 60 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 AD +TVTLN DGS TV DNGRGIP D H + G SAAE+IMT LHAGGKF+Q SYKVSGG Sbjct: 61 ADRVTVTLNADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS- 178 LHGVGVSVVNALSS L+L I R G + M+F +G P+ G A GT VTF PS Sbjct: 121 LHGVGVSVVNALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRRGTSVTFTPSL 180 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 V +F+ ++ RLREL+FLNS V+I D+R + + M+Y+GG+ +V Y+DR Sbjct: 181 RTFTGVVEFSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDR 240 Query: 239 --HKKPLMQSPIRIQGSR----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 + ++ PI ++ R + I++A++WND E+VL FTNNIPQ DGG Sbjct: 241 TAGRDRVIARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLPFTNNIPQTDGG 300 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH+ G ++ALTR +YV+++ K K + GDD REG T+++S+K+PDP+F+SQTK K Sbjct: 301 THVQGFKTALTRSFMAYVDRN--PLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAK 358 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 LVS+EV V+S V + L+ WL+E+P +A+ ++ K ++A+ R+AA+RAR++ RRK VLD Sbjct: 359 LVSNEVSGPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLD 418 Query: 407 I-ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 SLPGKLADC ERDP KSE+ +VEGDSAGGSAKQGR E QA+LPLRGKILN E AR Sbjct: 419 DITSLPGKLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARL 478 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 D+++ + +GTL+ ALG GIG+ S D +K+RYH+IIIMTDADVDGAHIRTLLL FFFR M Sbjct: 479 DRIMKNAAVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 P LI+ GF+Y +PPLY I + +++D+ +L+ L+ D V+S Sbjct: 539 PELINRGFVYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEGIAFRRADGA-VLSGV 597 Query: 586 DLRNFIDDALKIDKLIKDFYPN-HDKTFIEQAVISGVFNC--ESDQEINVSLASKLANRL 642 DL + A +L + + ++ V+SG + D E + L ++++ R+ Sbjct: 598 DLAVAAEQAKADARLFAAIDADVGLRPLADELVVSGWLDPVLWQDDEAMLRLGAEISARM 657 Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + S W + ++ +GV ++ ++ + + +I + Y Sbjct: 658 PSMMPAS--RWTSEAEAEGLRMRWTVKGVGQERLVPRALCEGAVAHTLVRRRQQIAQVYG 715 Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 +++ +I + GP SL D + +G KG+++ RYKGLGEM A QL ETTL+P RS+ Sbjct: 716 AGAAILGPAGEIPVPGPSSLFDHVRELGGKGLTIGRYKGLGEMTAQQLSETTLDPTARSI 775 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +++++ DA A +LMG + EPR+ ++ +D Sbjct: 776 VQIRVEDAEAARAKVDQLMGSKSEPRKHLLETRGHLVEVD 815 >gi|317179129|dbj|BAJ56917.1| DNA gyrase subunit B [Helicobacter pylori F30] Length = 773 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 340/799 (42%), Positives = 485/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SY + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QSYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMVGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+EG IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS VR++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYVRALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDTLSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|315586815|gb|ADU41196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter pylori 35A] Length = 773 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 337/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+E IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSVALDHFLIEHGINSVDI------EGIGKNDLMNLLKVARHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D +I + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKILEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|217034369|ref|ZP_03439784.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10] gi|216943164|gb|EEC22634.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10] Length = 773 Score = 721 bits (1861), Expect = 0.0, Method: Composition-based stats. Identities = 336/799 (42%), Positives = 484/799 (60%), Gaps = 30/799 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y + SI++LKGL+ V+KRP MYIGDT+ GLHHM+YEV+DNA+DES+ G+ D I +T Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVG-GLHHMVYEVVDNAVDESMAGFCDTINIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSC V DNGRGIP D+H E I A V++T LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 61 LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG--NDTGTEVTFLPSSDIFSVQ 185 VNALS L + IK+E IY F GI + L + G ++GT + F P + V Sbjct: 121 VNALSKRLIMTIKKESQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F LQ R +E+++LN ++IS ++++ + T FY+ G++ FV + + Sbjct: 181 EFQAGILQKRFKEMAYLNDGLKISFKEEKT--QLQETYFYEDGLKQFVKDSAKKELLTPV 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + + SI++A+ + D Y+EN L F NNI +GGTH +G + L++ I Y++ Sbjct: 239 ISFKSMDEETHTSIEVALAYADDYNENTLSFVNNIKTSEGGTHETGFKMGLSKAILQYID 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + I +D +EG +V+S+KM +P F QTK KL SS R++V V D + Sbjct: 299 EN--IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIH 356 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P EAKII K L A+ R+A+++AR+LTR+K L + +LPGKLADC +DP +S Sbjct: 357 QFLEENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLES 416 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE++ K+L S+EI +ITA G GI Sbjct: 417 EIFLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 Q+SFDI +LRYHKIIIMTDADVDG+HI+TLL+TFF+R + LI G +YI + PLY Sbjct: 477 -QESFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYK 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK+ Y+KD +L+ +LI ++ I KNDL N + A + + Sbjct: 536 KGKTEIYLKDSIALDHFLIEHGINSVDI------EGIGKNDLMNLLKVACHYRYALLELE 589 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 ++ I + +I D ++ + LN+ +S + S L Sbjct: 590 KRYNLLEILRFLIETKDALSFDMKVLEKSILEKLEGLNYQILRS-----FATEESLHLHA 644 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 + +G+ E F L+ + + ++ E L L + + L+ Sbjct: 645 QTPKGLVE-FNLDDNLFKEVLFEEANYTYQKLMEYNLDFL---------ENKDILAFLEE 694 Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + +KG ++QRYKGLGEMN + LWETT++ + RSL+++KI D + D +FS MGDEV Sbjct: 695 VENHAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEV 754 Query: 786 EPRREFIQENSLPSA-LDI 803 EPRR FIQ ++ LD+ Sbjct: 755 EPRRAFIQAHAKDVKQLDV 773 >gi|296120721|ref|YP_003628499.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein [Planctomyces limnophilus DSM 3776] gi|296013061|gb|ADG66300.1| DNA topoisomerase type IIA subunit B region 2 domain protein [Planctomyces limnophilus DSM 3776] Length = 824 Score = 719 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 316/837 (37%), Positives = 483/837 (57%), Gaps = 47/837 (5%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MSD S Y +I+ L+G++ ++ RP MYIGD G GLHH+++EV+DN+IDE Sbjct: 1 MSDAAATPAPSTSEYSEKNIRALEGIEGIRLRPDMYIGD-RGSRGLHHLVFEVVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG-ISAAEVIMTRLHAGGKFN-QKS 113 ++ GYA ++V +N+DGS ++ D+GRGIP ++G SA E+++T++HAGGKF+ Q Sbjct: 60 AVAGYATWVSVKINVDGSVSIIDDGRGIPVGAMADQGGKSALEIVLTKIHAGGKFDRQGG 119 Query: 114 YKV-SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 YK +GGLHGVG++ VNALS WL I+REG+++ M F G L G A + TGT+ Sbjct: 120 YKTGTGGLHGVGITAVNALSEWLSAEIRREGHVWTMDFARGTRTTELTKLGLA-DVTGTK 178 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 +TF P S IF+ F +D L RL+EL+FLN+ + I L D+R+ + Y G+ F Sbjct: 179 ITFKPDSTIFTESKFVFDVLAKRLQELAFLNAGIHIRLADERTEQS--EEFHYPDGLREF 236 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +L+R + L + I+G + + + + ++ NDG+ E V F NNI +GGTHLSG Sbjct: 237 VKHLNRTETTLYADILSIEGEIEGVKVMVCLQHNDGFSETVRAFANNIYNMEGGTHLSGF 296 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 RSALTR I +Y ++ GDD REG V+++++P P+F QTK KL + EV Sbjct: 297 RSALTRAINNYGKREN--LFKDIDTTGDDFREGLVCVIAVRVPHPQFEGQTKTKLSNGEV 354 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 +V S V +GL+ + EE+P AK I +K A+ R+AAR++R++ RRKG L LP Sbjct: 355 EGIVNSIVFEGLTKFFEENPGIAKKICQKGAMAAEAREAARKSREMVRRKGALTSGGLPE 414 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DC R+ +EL+LVEGDSAGGSA GR QAILPLRGKILNVE+A+ K+L + Sbjct: 415 KLRDCRSRELDITELYLVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVKILDNA 474 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI L A+G + D+ K RY KII+MTDADVDG+HIRTLLLTF FR M +L+ +G Sbjct: 475 EIANLFKAVGIPPMAELEDVTKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRALVEHG 534 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI +PPLY + + +YV+ + + LI ++ + + LR+ ++ Sbjct: 535 CIYIAQPPLYRVIQKNKTRYVQTHDMMMTELIELGMNGTRLVDPNDGFTFEGESLRHVVN 594 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNC-----------------ESDQEINVSLA 635 ++ + ++ + +++ F E + S A Sbjct: 595 LMRRLAEPVELLERRGISLKSLEPLLNASFKLPQYRVTITRTDHWFHTREDVEAFLQSEA 654 Query: 636 SKLANRLNF-------IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 ++ + LN +A + K G+ +D+ R V S + G + Sbjct: 655 ARRGSELNMANSDAQPVAADTAKPVEGAAQLTDLHEIRTLNDV-------LSDLRGIGIQ 707 Query: 689 YKRIFSNRIEEN-YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 ++ + + + + + +K+ LL+ + ++G G+++ R+KGLGEM+ Sbjct: 708 FRHLIPAGMRDGELVFPFRIEQEKSVLKLQSLRELLEKLRALGEDGLTVTRFKGLGEMDP 767 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +LWET++ P R+LL+V++ DA+ AD++F LMGD+VEPRREFI++++L LDI Sbjct: 768 EELWETSMQPTARTLLQVRMDDAAAADEMFRVLMGDQVEPRREFIEKHALDVKDLDI 824 >gi|283778833|ref|YP_003369588.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068] gi|283437286|gb|ADB15728.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068] Length = 830 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 322/838 (38%), Positives = 484/838 (57%), Gaps = 43/838 (5%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+D + Y+A+SI+ L L+ V+ RP+MYIGD GLHH++YEV+DN+IDE+ Sbjct: 1 MADELTPENVEKDYNAESIKHLSDLEHVRLRPAMYIGDITA-RGLHHLVYEVVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE----EG--ISAAEVIMTRLHAGGKFN 110 + G+A ++V +N DGS TV D+GRGIP + H++ EG +S E +MT+L GGKF+ Sbjct: 60 MAGHAKQVSVIVNTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFD 119 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 + SYK SGGLHGVGV+VVN LS W ++++ R G IY+ S+ G P+ GS + TG Sbjct: 120 KDSYKTSGGLHGVGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGST-DRTG 178 Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 T+ TF P IF + YD L RL+EL+FLNS V+I D+R+ E E Y+ GI Sbjct: 179 TKTTFKPDGTIFQTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAE--FCYERGII 236 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 F+ +L+R + I ++G D + ++A++++ Y EN+ + NNI +GGTH+S Sbjct: 237 EFIEHLNRASDVIHSDVIYLRGEVDTVGFEIALQYSAEYTENLHSYVNNIHTVEGGTHVS 296 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G RSALTR + +Y +K + GDD REG T+V+S+++ P+F QTK KL + Sbjct: 297 GFRSALTRTLNAYGKKEG--LFKDITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNG 354 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIV-KKVLDASMVRDAARRARDLTRRKGVLDIAS 409 EV +V VN+ L+ +LEE+P AKIIV K VL A A + L RK L Sbjct: 355 EVDGIVAGAVNEFLAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGG 414 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DC ++ ++ EL+LVEGDSAGGSA+ GR R+ QAILPLRGKI+N ++R DK+L Sbjct: 415 LPGKLRDCISKEMERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVL 474 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +++E+ ++I A+GTGIG + D+ K RY+KIIIMTDADVDG+HIRTLLL FF+RQM SL+ Sbjct: 475 ANEEVQSMIQAIGTGIGAEI-DLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLV 533 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 NG +Y+ +PPL+ + K YV+ +E + L+++ + + + +D++ Sbjct: 534 ANGHVYVAQPPLFRVRSKKETYYVQTDEEMRSQLLSRGIGDTELD-LQNGTKFVGDDMKK 592 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQ---AVISGVFNCESDQEINVSLASKLANRLNFIA 646 ++ + + V +G + + A +N Sbjct: 593 IAGILASMEDALVALERRGISLKLHATRADVNTGALPVVHLFIGSRDYWLRSAEEINAKV 652 Query: 647 EKSEKSWHGSINNSDILVK----------------RIARGVQEQFVLEGSSIFSFGSKYK 690 ++ E I + +V+ A V+ V ++ S Y Sbjct: 653 QELESELKKKIIFGEKVVEAAPGATDAPPAVDENAIRAYSVELHEVKTINAGLSQLKPYS 712 Query: 691 RIFSNRI----EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746 + I L ++I + +L+ +I +G+KG+S+ R+KGLGEMN Sbjct: 713 IDLAALIPQERTGTDEPRYILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMN 772 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 A +L +TTL+P R+L++V + DA ADD+F LMG++VEPRR+FI+ ++L LD+ Sbjct: 773 AEELRDTTLDPKNRTLVQVSMRDAGAADDMFRVLMGEKVEPRRQFIETHALEVRNLDV 830 >gi|269799052|gb|ACZ43804.1| DNA gyrase subunit B [Moritella viscosa] Length = 700 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 357/703 (50%), Positives = 475/703 (67%), Gaps = 15/703 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N +YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN----NYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGL Sbjct: 57 CTDVVVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I R G+I++ + +G P+ V G + TGTE+ F PS + Sbjct: 117 HGVGVSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV YL+ +K Sbjct: 176 TFTNTLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNK 234 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+ + R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR Sbjct: 235 TPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y+EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE Sbjct: 295 LNNYMEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L+ +L E+P EA +V K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC Sbjct: 355 AMGEKLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLI Sbjct: 415 EKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI + Sbjct: 475 TAMGCGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK +Y+KD+ L YL +L I L + ++ KI+ Sbjct: 535 PPLYKMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIE 594 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA-----EKSEK 651 L+ + K F + + V E D+ + A +L L + Sbjct: 595 SLMGKLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKEVTGTLYSARV 654 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 + ++ G+ + S Sbjct: 655 AQDEESQLFYPVLSIRQHGLDTSYDFTPGFFNSKEYATLTGLG 697 >gi|149174461|ref|ZP_01853087.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] gi|148846571|gb|EDL60908.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] Length = 831 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 328/838 (39%), Positives = 497/838 (59%), Gaps = 42/838 (5%) Query: 1 MSDNIQNSS------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MSD ++ + YD +I+ L+G++ ++ RP+MYIGDT GLHH++YEV+DN+ID Sbjct: 1 MSDQEESQTELKKTGYDESNIRALEGVEGIRTRPAMYIGDT-TLRGLHHLVYEVVDNSID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFN-QK 112 E + YA II V +N DGS T SD+GRGIP + + A EV++T +HAGGKF+ + Sbjct: 60 ECVNNYASIINVKINADGSVTCSDDGRGIPIGIMPDMNNRPALEVVLTEIHAGGKFDREG 119 Query: 113 SYKV-SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 YK +GGLHGVG++ VNALS WL+ ++REG+++ M F G+L PL G + +GT Sbjct: 120 GYKTGTGGLHGVGITAVNALSEWLEAEVRREGHVWTMDFHQGLLKTPLKKLGKT-DKSGT 178 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 ++TF P IF F YDTL RL+EL+FLN+ V+I + D+R+ + Y+ G+ Sbjct: 179 KITFKPDGTIFPDTKFVYDTLTKRLQELAFLNAGVRIRINDERTGQS--DEFHYEEGLVE 236 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV +L+R + L + I IQG + + +D++++ NDG ENV CF NNI +GGTH SG Sbjct: 237 FVRHLNRTETVLYEEIIHIQGELEGVQVDISVQHNDGSTENVRCFANNIFNIEGGTHFSG 296 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R ALTR I +Y +K+ + GDD REG T+V+++++PDP+F QTK KL +SE Sbjct: 297 FRGALTRSINAYGKKAN--LFKDFTPSGDDFREGLTAVITVRVPDPQFEGQTKTKLGNSE 354 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V +V++ VN+ L+ + EE+P AK I K L A+ R+AA++AR++ RRKG L LP Sbjct: 355 VEGIVQTVVNEKLTKFFEENPGVAKKISLKGLLAAEAREAAKKAREMVRRKGALTTGGLP 414 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 KL DC R+ +EL+LVEGDSAGGSA GR QAILPLRGKILNVE+A+ K+L + Sbjct: 415 EKLRDCRSRELDITELYLVEGDSAGGSADTGRDSNIQAILPLRGKILNVEKAQLVKVLDN 474 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI + A+G G D+ K RY KII+MTDADVDG+HIRTLLLTFFFR M L++N Sbjct: 475 AEIANIFKAVGVPPGAAFDDVTKRRYGKIILMTDADVDGSHIRTLLLTFFFRHMRELVNN 534 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +Y+ +PPLY +T+GK ++YV+ ++ + + L+ +LS+ + + L + Sbjct: 535 GCVYVAQPPLYRVTQGKKIRYVQTQDEMMNELVELALSDSNLQH-EDGTIFEGEMLEKLV 593 Query: 592 DDALKIDKLIKDFYPNHDK---TFIEQAVISGVFNCES------------DQEINVSLAS 636 D +++ + + A G+ +E+ L Sbjct: 594 DLVSDLEEPLGTLDRRGIDLKFIALNFATEDGLLPQYRIFLGKQQFWFTSQEEMASFLKE 653 Query: 637 KLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSN 695 + A R + + + + +S+ A+ G + L + + + + Sbjct: 654 EEAKRGDELQIADDNGAAETSEDSEEDEDEFAKAGALQVTDLHEIRTINDLLQKLKGYGI 713 Query: 696 RIEENYLT---------ILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746 +++ Y + + +K++ LL ++ IG KG+ + R+KGLGEMN Sbjct: 714 HLKDFYSPGNRNGEPIYPFCINSGSNAVKLSNLRQLLPSLRDIGEKGLKLTRFKGLGEMN 773 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +LW+T+++P+ R LL+V + DA+ AD++F LMGD VEPRREFI++++L LD+ Sbjct: 774 SEELWDTSMDPEKRVLLQVGMQDAAAADEIFRVLMGDVVEPRREFIEKHALDVKNLDV 831 >gi|269799054|gb|ACZ43805.1| DNA gyrase subunit B [Moritella viscosa] Length = 656 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 352/646 (54%), Positives = 465/646 (71%), Gaps = 6/646 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ + Sbjct: 1 MSENNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCTDV 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ DGS +VSD+GRGIP D+H+EEG+SAAEVI+T LHAGGKF+ SYKVSGGLHGVG Sbjct: 61 VVTIHEDGSVSVSDDGRGIPVDIHEEEGVSAAEVILTVLHAGGKFDDNSYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS L+L I R G+I++ + +G P+ V G + TGTE+ F PS + F+ Sbjct: 121 VSVVNALSEKLELTIHRHGHIHQQIYRHGEPQAPIAVIGDI-DTTGTELRFWPSHETFTN 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD L RLRELSFLNS V I LID+R + + Y+GGI+AFV YL+ +K P+ Sbjct: 180 TLFHYDILAKRLRELSFLNSGVSIKLIDER-EDGKSDHFVYEGGIKAFVDYLNVNKTPIN 238 Query: 245 QSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + R++ I++++AM+WNDG+ E + CFTNNIPQ+DGGTHL+G R ALTR + +Y Sbjct: 239 KDAFHFSVEREDGITVEVAMQWNDGFQEGIYCFTNNIPQRDGGTHLAGFRGALTRTLNNY 298 Query: 304 VEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 +EK KK K S GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VE + + Sbjct: 299 MEKEGFLKKAKSSTATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQAMGE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +L E+P EA +V K++DAS R+AAR+AR++TRRKG LD+A LPGKLADC E+DP Sbjct: 359 KLAEYLLENPKEASTVVTKIIDASRAREAARKAREMTRRKGALDLAGLPGKLADCQEKDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITA+G Sbjct: 419 ALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAMG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D ++ +K RYH+IIIMTDADVDG+HIRTLLLTFFFRQMP LI G++YI +PPLY Sbjct: 479 CGIGRDEYNPDKTRYHQIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK +Y+KD+ L YL +L I L + ++ KI+ L+ Sbjct: 539 KMKKGKQERYIKDDADLTQYLTTIALDGAGLFVNSDAPAIRGAALEDLVNGYRKIESLMG 598 Query: 603 DFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIA 646 + K F + + V E D+ + A +L L Sbjct: 599 KLNRSLPKVFTNEMIYQSVLTAEMLTDEASTTAWAEELVATLTAKE 644 >gi|325108906|ref|YP_004269974.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305] gi|324969174|gb|ADY59952.1| DNA gyrase subunit B [Planctomyces brasiliensis DSM 5305] Length = 826 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 311/832 (37%), Positives = 481/832 (57%), Gaps = 35/832 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N SYD I+ L+G++ ++ RP+MYIG TD GLHH+++E+ DN +DE + Sbjct: 1 MDENKPQGSYDHTKIRALEGIEGIRLRPAMYIGGTDSV-GLHHLVFELTDNVLDEYVNNN 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFN-QKSYKV-S 117 A ++TV +N DGS +V+D+GRGIP + +E SA EV+ T++HAGGKF+ + Y + Sbjct: 60 AAMMTVKINADGSVSVTDDGRGIPVGEMEGQENKSALEVVFTKIHAGGKFDREGGYATGT 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG++ VNA S WL+ ++REG+++ M F G + + L G TGT+VTF+P Sbjct: 120 GGLHGVGITAVNACSEWLEAEVRREGHVWTMEFSKGAVTSGLTKLG-TTEQTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IF F+Y+ L+ RL++ +FLN+ ++I L+D+RS + FY+ G+ FV +L+ Sbjct: 179 DPTIFPDTTFSYEVLRKRLQDAAFLNAGIRIRLVDERSGQT--DDFFYEDGLVEFVKHLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R + L IRI G D +++AM++NDGY EN+ C+ N I +GG+HLSG R ALT Sbjct: 237 RTETALHPEVIRINGQSDETVVEIAMQYNDGYSENIRCYANGIYNPEGGSHLSGFRGALT 296 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + +Y +K + G+D REG +V+++++P+P+F SQTK KL ++EV V Sbjct: 297 RTLNNYGKKEN--LFKDVQLSGEDFREGLAAVITVRIPNPQFESQTKIKLTNAEVDGAVA 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S V++ L+ ++EE+P AK I++K + A+ R+AAR+ R++ RRKG L LP KL DC Sbjct: 355 SIVSEQLNKYMEENPQLAKKILQKGILAAEAREAARKQREMVRRKGALTTGGLPEKLRDC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 R+ +E++ VEGDSAGGSA GR QAILPLRGKILNVE+A+ K+L + EI + Sbjct: 415 RSRELDITEIYFVEGDSAGGSADTGRDSNTQAILPLRGKILNVEKAQLVKVLDNAEISAM 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 A+G G + DI K RY KII+MTDADVDG+HIRTLLLTF FR M L+ G +Y+ Sbjct: 475 FKAIGIPPGAELEDIRKRRYGKIILMTDADVDGSHIRTLLLTFLFRHMRPLVQAGCVYVA 534 Query: 538 KPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + R K +YV+ E + LI+ +L+ V ++ +D + Sbjct: 535 QPPLYRVTQRNKKSRYVQTHEKMMSELIDLALAAASLHCKADGAVFEGDNFGRLVDLLHE 594 Query: 597 IDKLIKDFYPNHD--KTFIEQAVISGVFNCESDQEINVS--LASKLANRLNFIAEKSEK- 651 + + ++ + + ++ I + F++E++E+ Sbjct: 595 LSEPLETLERRGVTLRYLQQNDLLQDGNLPRYQVFIGKEPHWFFDKKDMEQFLSEETERR 654 Query: 652 ------------SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 +G+ SD + + V + + I Y + + Sbjct: 655 GTEFEVAHEQQMEKNGNGEESDQASRPTLYMIDMHEVRKINDILKRLKDYGISMGDLVPA 714 Query: 700 NYLT-----ILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQRYKGLGEMNASQLWE 752 + +I ++ +LL + +G I ++ R+KGLGEM+A +LW Sbjct: 715 GLKDGEAVFPFVVQTEKKEIPLSSLRNLLQILRKVGEDSIQGTITRFKGLGEMDAEELWL 774 Query: 753 TTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 TT++P+ RSLL+V + DA+ AD++F LMGD VEPRREFI++++L LD+ Sbjct: 775 TTMDPEARSLLQVTMEDAAAADEIFRILMGDHVEPRREFIEKHALDVKELDV 826 >gi|32475718|ref|NP_868712.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] gi|32446261|emb|CAD76089.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] Length = 897 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 315/829 (37%), Positives = 477/829 (57%), Gaps = 42/829 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 NS Y + L L+ V++RP MYIGDT GLHH++YEV+DN+IDE++ G+A ++ Sbjct: 80 ANSEYTDKDLLHLSDLEHVRERPGMYIGDT-TVRGLHHLVYEVVDNSIDEAMAGFAKSVS 138 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHK------EEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 V ++ DGS TV D+GRG+P H + +S E +MT L GGKF + +Y+ SGG Sbjct: 139 VIVHTDGSVTVEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGG 198 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGV+VVN LS W ++ + R+G+ + + GI P+ G TGT+ TF Sbjct: 199 LHGVGVTVVNFLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADG 257 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +N+DTLQ RL+EL+FLNS V+I +D+R+ E + GI FV +L+R Sbjct: 258 QIFSVTKYNFDTLQKRLQELAFLNSGVRIKFLDERNGEGGDYQY--DRGIVEFVEHLNRA 315 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L I+ G +D + D+A++++ + E V + NNI +GGTH+SG RSALTR Sbjct: 316 SDVLHGDVIQFVGEKDGVEYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRT 375 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y +K + GDD REG T+V+S+++P P+F QTK KL + EV ++ S Sbjct: 376 LNNYGKKEG--LFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSG 433 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418 V + L+ +LEE+P AK IV+K L A+ R+AAR+A+D R+ K L LPGKL DC Sbjct: 434 VGEALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCI 493 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ ++ E++LVEGDSAGGSA+ GR RE QAILPLRGKI+N ++R DK+L+++E+ ++I Sbjct: 494 SKNMEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMI 553 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+GTGIG D D+++ RY+K+IIMTDADVDG+HIRTLLL FF+RQM L+ G +Y+ + Sbjct: 554 QAIGTGIGADQ-DLSRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQ 612 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ +++GK+ Y++ EE ++ L+ + L+ + + + +R ++ Sbjct: 613 PPLFRVSQGKNRYYIQSEEEMKGQLLERGLN-DTRFETEDGRSAEGDSMRALCVALASME 671 Query: 599 KLIKDFYPNHDKTFIEQ--------------AVISGVFNCESDQEINVSLASKLANRLNF 644 I + I G + Q + ++ L+ Sbjct: 672 DAILALERRGVSLRVHSERFDPVTGKLPPFLLTILGGEHWFMKQSDVEAFLAENDATLDI 731 Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 + E + G +++ V L + G K +++ Sbjct: 732 DQAEEELNVEGEEEVKSDEPEKV---VAHLAELHEVRTINSGLKDLEPLGFGLQDLIPAD 788 Query: 705 --------LSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 L+ D + + LL + + G KG+ + R+KGLGEMNA +L ETTL Sbjct: 789 RTGSTTARFELVRGEDMRRPLEDLRELLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTL 848 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P R+L++V +TDA AD++F LMGD+VEPRREFI+ ++L LD+ Sbjct: 849 DPANRTLVKVNLTDAGAADEMFRLLMGDKVEPRREFIETHALDVRNLDV 897 >gi|254673484|emb|CBA08885.1| DNA gyrase subunit B [Neisseria meningitidis alpha275] Length = 698 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 330/704 (46%), Positives = 452/704 (64%), Gaps = 8/704 (1%) Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159 MT LHAGGKF+ SYK+SGGLHGVGVSVVNALS W+ L I R+G + + F+ G + PL Sbjct: 1 MTVLHAGGKFDNNSYKISGGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRFVRGETEEPL 60 Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 V G + + GT V FL S++ F ++++D L R+RELSFLN+ V I L D+R + Sbjct: 61 NVVGDS-DKKGTTVRFLASTETFGNVEYSFDILAKRIRELSFLNNGVDIELTDERDGK-- 117 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 + GG+ FV Y++R K PL + G +D +S++ AM+WND Y E+V CFTNN Sbjct: 118 HESFALSGGVAGFVQYMNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNN 177 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHL+ LR +TR I +Y+E + +KK K GDD REG T VLS+K+PDP+F Sbjct: 178 IPQRDGGTHLTALRQVMTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKF 237 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVS E+ VV ++ L+ +LEE+P EAKII K++DA+ R+AAR+AR++T Sbjct: 238 SSQTKDKLVSGEIGPVVNEVISQALTDFLEENPAEAKIITGKIVDAARAREAARKAREIT 297 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKGV+D LPGKLADC E+DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILN Sbjct: 298 RRKGVMDGLGLPGKLADCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILN 357 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+ARF+KML+SQE+ LITALG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLT Sbjct: 358 VEKARFEKMLASQEVAALITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLT 417 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FF+RQMP L+ G++YI +PPLY GK +Y+KDE + +L+ +L + + Sbjct: 418 FFYRQMPELVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKII--SDG 475 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 I +L + L +I+ D+ + + + + S + + ++A L+ Sbjct: 476 RTIEGAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAE-LS 534 Query: 640 NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 L+ E+ + I + R G +E + S + + ++ Sbjct: 535 GLLDEKEVALERIEGHEGHRF-IKITRKLHGNVMVSYIEPKFLNSKAYQTLTQTAAALKG 593 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 L + + LD + S+ +KG+S+QRYKGLGEMN QLWETT++P Sbjct: 594 MVGEGAKLYKGENGYDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPAV 653 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 R LL+V+I DA AD++F LMGDEVEPRR FI+ N+L + +D Sbjct: 654 RRLLKVRIEDAIAADEVFVTLMGDEVEPRRAFIENNALIAQNID 697 >gi|327539175|gb|EGF25802.1| DNA gyrase subunit B [Rhodopirellula baltica WH47] Length = 869 Score = 681 bits (1758), Expect = 0.0, Method: Composition-based stats. Identities = 314/829 (37%), Positives = 475/829 (57%), Gaps = 42/829 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 NS Y + L L+ V++RP MYIGDT GLHH++YEV+DN+IDE++ G+A ++ Sbjct: 52 ANSEYTDKDLLHLSDLEHVRERPGMYIGDT-TVRGLHHLVYEVVDNSIDEAMAGFAKSVS 110 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHK------EEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 V ++ DGS TV D+GRG+P H + +S E +MT L GGKF + +Y+ SGG Sbjct: 111 VIVHTDGSVTVEDDGRGVPVTRHDQLSEELDREVSTLEGVMTVLKFGGKFEKGAYQTSGG 170 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGV+VVN LS W ++ + R+G+ + + GI P+ G TGT+ TF Sbjct: 171 LHGVGVTVVNFLSQWAEVEVSRDGSTWTQGYERGIPTGPIQK-GRPTKKTGTKTTFKADG 229 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +N+DTLQ RL+EL+FLNS V+I +D+R+ E + GI FV +L+R Sbjct: 230 QIFSVTKYNFDTLQKRLQELAFLNSGVRIKFLDERNGEGGDYQY--DRGIVEFVEHLNRA 287 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L I+ G +D + D+A++++ + E V + NNI +GGTH+SG RSALTR Sbjct: 288 SDVLHGDVIQFVGEKDGVEYDMALQYSTEFTETVQSYVNNIHTIEGGTHVSGFRSALTRT 347 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y +K + GDD REG T+V+S+++P P+F QTK KL + EV ++ S Sbjct: 348 LNNYGKKEG--LFKNTTPTGDDFREGLTAVISVRVPHPQFEGQTKTKLGNGEVDGIITSG 405 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418 V + L+ +LEE+P AK IV+K L A+ R+AAR+A+D R+ K L LPGKL DC Sbjct: 406 VGEALNKYLEENPRTAKAIVRKGLLAAEAREAARKAKDQLRKRKDALGGGGLPGKLRDCI 465 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ ++ E++LVEGDSAGGSA+ GR RE QAILPLRGKI+N ++R DK+L+++E+ ++I Sbjct: 466 SKNMEECEVYLVEGDSAGGSAEGGRMREYQAILPLRGKIINAYKSREDKVLANEEVQSMI 525 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+GTGIG D ++ RY+K+IIMTDADVDG+HIRTLLL FF+RQM L+ G +Y+ + Sbjct: 526 QAIGTGIGADQDL-SRRRYNKVIIMTDADVDGSHIRTLLLCFFYRQMYQLVAAGHVYVAQ 584 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ +++GK+ Y++ EE ++ L+ + L+ + + + +R ++ Sbjct: 585 PPLFRVSQGKNRYYIQSEEEMKGQLLERGLN-DTRFETEDGRSAEGDSMRALCVALASME 643 Query: 599 KLIKDFYPNHDKTFIEQ--------------AVISGVFNCESDQEINVSLASKLANRLNF 644 I + I G + Q + ++ L+ Sbjct: 644 DAILALERRGVSLRVHSERFDPVTGKLPPFLLTILGGEHWFMKQSDVEAFLAENDATLDI 703 Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 + E + G +++ V L + G K +++ Sbjct: 704 DQAEEELNVEGEEEVKSDEPEKV---VAHLAELHEVRTINSGLKDLEPLGFGLQDLIPAD 760 Query: 705 --------LSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 L+ D + + LL + + G KG+ + R+KGLGEMNA +L ETTL Sbjct: 761 RTGSTTARFELVRGEDMRRPLEDLRDLLPEVRAAGEKGLQVTRFKGLGEMNAEELRETTL 820 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P R+L++V +TDA AD++F LMGD+VEPRREFI+ ++L LD+ Sbjct: 821 DPANRTLVKVNLTDAGAADEMFRLLMGDKVEPRREFIETHALDVRNLDV 869 >gi|6018677|emb|CAB57885.1| DNA gyrase B subunit [Photobacterium damselae subsp. piscicida] Length = 682 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 326/684 (47%), Positives = 441/684 (64%), Gaps = 9/684 (1%) Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163 HAGGKF+ SYKVSGGLHGVGVSVVNALS ++L I R G+I+ + +G+ PL V G Sbjct: 1 HAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIG 60 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 + TGT + F PSS+ F+ F Y+ L RLRELSFLNS V I L D+R E ++ Sbjct: 61 DT-DRTGTTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHF 118 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQ 282 Y+GGI+AFV +L+R+K P+ Q R++ I++++AM+WNDG+ EN+ CFTNNIPQ Sbjct: 119 MYEGGIQAFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQ 178 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +DGGTHL+G R ALTR + +Y+EK SKK K + GDD REG T+V+S+K+PDP+FSSQ Sbjct: 179 RDGGTHLAGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQ 238 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK+KLVSSEV+S VES + + L +L E+P +AK + K++DAS R+AAR+AR++TRRK Sbjct: 239 TKDKLVSSEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRK 298 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 G LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ Sbjct: 299 GALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEK 358 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 ARFDKMLSSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+ Sbjct: 359 ARFDKMLSSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFY 418 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 RQMP LI G +YI +PPLY + +GK QY+KD+E ++ + + +L + + Sbjct: 419 RQMPELIERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALENAALFTTEGAPAM 478 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN-VSLASKLANR 641 + L N + KLI+ + + + V + + + Sbjct: 479 AGLALENLVGQYNSTMKLIERMSRRYPTLLLNELVHQPRLTAMLSDRAQVEAWVTPVIEA 538 Query: 642 LNFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR 696 LN + N+ V GV ++ L I S S Sbjct: 539 LNAKQSGESHYTFDIVVDSENNHFLPKVVVRTHGVDHEYPLSFELICSKEYSKLADLSEE 598 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLN 756 + + K + +L+ + R+G+S+QRYKGLGEMN QLWETT++ Sbjct: 599 LNGLLDDSAYVQRGERKQPVASFKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMD 658 Query: 757 PDTRSLLRVKITDASQADDLFSRL 780 P++R ++RV I DA AD+LF+ L Sbjct: 659 PESRRMMRVTINDAVAADELFTTL 682 >gi|296537346|ref|ZP_06899212.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas cervicalis ATCC 49957] gi|296262326|gb|EFH09085.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas cervicalis ATCC 49957] Length = 705 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 355/698 (50%), Positives = 475/698 (68%), Gaps = 15/698 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +YD+ SI +L+GL+AV+KRP MYIGDTD SGLHHM +E++DNA+DE+ GYA Sbjct: 13 EPQADAYDSASITVLRGLEAVRKRPGMYIGDTDDGSGLHHMAFEIIDNAVDEAQAGYATR 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 V LN DGS TV+D+GRGIPTD+H EEG+SAAEV++TRLHAGGKFNQ SYKVSGGLHGV Sbjct: 73 CDVVLNADGSVTVTDDGRGIPTDIHAEEGVSAAEVVLTRLHAGGKFNQNSYKVSGGLHGV 132 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G +VVNALS W+ + I R G + + F +G PL V G + + GT VTF PS+ F+ Sbjct: 133 GAAVVNALSEWMDVTIWRNGQEHFLRFEHGDTVQPLKVVGPSDHKNGTRVTFKPSAGTFT 192 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRH 239 ++ + L+ RLREL+FLNS + I+L D+R +E ++GG+ AFV +LDR Sbjct: 193 RTEYEFAILEKRLRELAFLNSGLAITLRDERPVALGEPAKETAFRFEGGLVAFVEWLDRS 252 Query: 240 KKPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+PL + I ++ I ++LAM WN+ HE LCFTNNIPQ+DGGTH +G R ALTR Sbjct: 253 KEPLFKPAISLRAKEGTGIQVELAMWWNNSPHELALCFTNNIPQRDGGTHQAGFRQALTR 312 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y E+ +KK+K + G+D REG T+V+S+K+PDP+FSSQTK+KLVSSEV+ VV++ Sbjct: 313 VVMKYAEE--LAKKEKVELSGEDMREGLTAVISVKVPDPKFSSQTKDKLVSSEVQPVVQA 370 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D LS W E HP EA+ ++ +V+ A+ R AA+ AR+ RK LDI++LPGKLADC Sbjct: 371 AVADALSHWFETHPKEARQVLDQVVLAAAARKAAQLAREKVGRKNALDISTLPGKLADCQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP K ELFLVEGDSAGGSAKQGR R QAILPL+GKILNVERAR DKMLSS EIGTLI Sbjct: 431 EKDPTKCELFLVEGDSAGGSAKQGRDRRFQAILPLKGKILNVERARIDKMLSSAEIGTLI 490 Query: 479 TALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 TALGTGIG + F +KLRYH+I+IMTDADVDG+HIRTLLLTFFFRQMP L+ G Sbjct: 491 TALGTGIGTGPVERGGFSADKLRYHRIVIMTDADVDGSHIRTLLLTFFFRQMPELLARGH 550 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI +PPLY RG+ +Y+KD+ +LED+L+ ++L F D + LR ++ Sbjct: 551 LYIAQPPLYRAKRGQEERYLKDDRALEDFLLEKALHNATLRFADGQEA-QGAALRELVEG 609 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 + I+ N +EQA I+G ++D+ + + A I+ +E+ W Sbjct: 610 LRQTAHRIRRLSANLPAEMVEQAAIAGALTADTDRALAAAPALAARLD--AISRPTERGW 667 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR 691 + + + + + R RGV E+ ++ + + S +++ Sbjct: 668 KVTADAAGLAMSRTVRGVVERHRIDPAGLRSPEARWLA 705 >gi|215272278|dbj|BAG84634.1| DNA gyrase subunit B [Psychrobacter fulvigenes] gi|215272280|dbj|BAG84635.1| DNA gyrase subunit B [Psychrobacter fulvigenes] Length = 753 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 337/755 (44%), Positives = 461/755 (61%), Gaps = 49/755 (6%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P Sbjct: 1 MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 60 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Sbjct: 61 DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 120 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205 Y ++ +G+ D+ + A + TGT++ F PS D+F+ F YD L RLRELSFLNS Sbjct: 121 YHQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSHDVFTGTTFEYDILAKRLRELSFLNSG 179 Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 V+I L D+R + E +KGG+ FVSY++ K + + + IS+++A++W Sbjct: 180 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFTSEQAEGISVEVALQW 237 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K GDD REG Sbjct: 238 TDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKVVATGDDAREG 297 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 T+++S+K+PDP+FSSQTK+KLVSSEVRS VES ++D + +L E+P K I K++DA Sbjct: 298 LTAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFNDYLLENPSAGKAIAGKIMDA 357 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 + RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR Sbjct: 358 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 417 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 + QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTD Sbjct: 418 KTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 477 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 537 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 ++ I+ L ++D + + ++ + + + Sbjct: 538 STIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTD 597 Query: 626 S--DQEINVSLASKLANRLN-FIAEKSEKSWHGSINNSD--------------------- 661 D+ + + +L+ F ++ S + +I+ Sbjct: 598 MTYDKSAMQAWKEAMQTQLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMSPVIEVE 657 Query: 662 -----------------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 + + ++L+ S I S S Sbjct: 658 ESETTESDALSAKAQWLPRITVYVHQLAHHYLLDSSFINSGEYSKLLRLSAEWNTLLEED 717 Query: 705 LSLICNG-----DKIKITGPCSLLDTIFSIGRKGI 734 + I + L + R+G+ Sbjct: 718 AFIRREASAGTTRDIPVRDFDYLWQQMMLDARRGL 752 >gi|144898158|emb|CAM75022.1| DNA topoisomerase II [Magnetospirillum gryphiswaldense MSR-1] Length = 704 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 377/611 (61%), Positives = 466/611 (76%), Gaps = 7/611 (1%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ N Y ADSI++L+GLDAV+KRP MYIGDTD SGLHHM+YEV+DNAIDE+ Sbjct: 1 MTEPVNPNPTAEEYGADSIKVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GYA+++ V LN DGSCTV DNGRGIPTD+HKEEG+SAAEVIMT+LHAGGKF+Q SYKV Sbjct: 61 LAGYANLVEVVLNADGSCTVRDNGRGIPTDIHKEEGVSAAEVIMTQLHAGGKFDQNSYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS +L LRI R G+ + M F G PL + G + + +GTEVTFL Sbjct: 121 SGGLHGVGVSVVNALSEFLDLRIWRSGHEHTMRFHMGDAVAPLKLVGPS-DKSGTEVTFL 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS+ IF+ +F++ TL+HRLREL+FLNS V++ L D+R PE + Y+GGIEAFV YL Sbjct: 180 PSTTIFTKTEFDFATLEHRLRELAFLNSGVRLWLRDQRHPEEVVTELHYEGGIEAFVHYL 239 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR K L PI + G +D I++++AM W D YHE LCFTNNIPQ+DGGTHL+G R+AL Sbjct: 240 DRSKTALHAPPIAVAGEKDGITVEVAMEWCDSYHETQLCFTNNIPQRDGGTHLAGFRAAL 299 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I +Y +S +KK+K ++ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VV Sbjct: 300 TRTINTYANESGIAKKEKVALNGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVV 359 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS-LPGKLA 415 E+ V + L+ W EEHP EA+ +V KV++A+ R+AAR AR+LTR +S PGKLA Sbjct: 360 ENVVGEKLAEWFEEHPQEARKVVTKVVEAAAAREAAREARELTRHIVACWTSSPCPGKLA 419 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC+ERDP SELF+VEGDSAGGSAKQGR+R NQAILPL+GKILNVERARFDKMLSS EIG Sbjct: 420 DCTERDPALSELFIVEGDSAGGSAKQGRNRANQAILPLKGKILNVERARFDKMLSSAEIG 479 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI ALGTGIG++ F+ +K RYHKIIIMTDADVDG+HIRTLLLTFFFRQMP +I G+LY Sbjct: 480 TLIAALGTGIGREDFNADKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPEIIERGYLY 539 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY RG+S Y+KDE ++E+YLI+ L++ + V DLR + A Sbjct: 540 IAQPPLYRAKRGQSEVYLKDERAMEEYLIDGGLNDAVLRLGSGAQV-GGADLRALAETAR 598 Query: 596 KIDKLIKDFYP 606 + L+ P Sbjct: 599 TVRTLVNPLTP 609 >gi|21326652|gb|AAL30092.1| DNA gyrase subunit B [Xanthomonas campestris pv. campestris] Length = 621 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 343/622 (55%), Positives = 448/622 (72%), Gaps = 7/622 (1%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D N +YD+ I +L+GL+AV+KRP MYIGD +GLHHM++EV+DN++DE Sbjct: 1 MTDEQTTPPTPNGTYDSSKITVLRGLEAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDE 60 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V +++DGS VSDNGRG+P D+HKEEG+SAAEVI+T LHAGGKF+ SYK Sbjct: 61 ALAGHADDIVVKIHVDGSVAVSDNGRGVPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYK 120 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS L L I R+G Y+ + G PL A GT + F Sbjct: 121 VSGGLHGVGVSVVNALSEHLWLDIWRDGFHYQQEYALGEPQYPLKQL-EASTKRGTTLRF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P+ +IFS +F+YD L RLRELSFLNS V+I+LID+R E R Y+GGI +FV + Sbjct: 180 KPAVEIFSDVEFHYDILARRLRELSFLNSGVKIALIDER-GEGRRDDFHYEGGIRSFVEH 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L + K PL + I + G + I +D+A++W D Y E + CFTNNIPQKDGGTHL+G R A Sbjct: 239 LAQLKTPLHPNVISVTGEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRGA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR +++Y+E++ +K+ K ++ GDD REG +VLS+K+PDP FSSQTKEKLVSS+VR Sbjct: 299 LTRVLSNYIEQNGIAKQAKITLTGDDMREGMIAVLSVKVPDPSFSSQTKEKLVSSDVRPA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ L +L+E+P EAK I K++DA+ R+AAR+ARDLTRRKG LDIA LPGKLA Sbjct: 359 VENAFGARLQEFLQENPNEAKAITGKIVDAARAREAARKARDLTRRKGALDIAGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SELF+VEGDSAGGSAKQGR+R+NQA+LPLRGKILNVERARFD+ML+S ++G Sbjct: 419 DCQEKDPALSELFIVEGDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLASDQVG 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALGTGIG+D ++ +KLRYH+II+MTDADVDG+HIRTLLLTFF+RQMP LI G++Y Sbjct: 479 TLITALGTGIGRDEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 538 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY + +GKS Y+KD+ +L YL + ++ + + I+ L + Sbjct: 539 IGLPPLYKLKQGKSELYLKDDAALNAYLASSAVEGAALIPASDEPPITGEALEKLLLLFA 598 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 + I +D + + Sbjct: 599 GAKEAIARNAHRYDPALLTALI 620 >gi|72388577|gb|AAZ67932.1| DNA gyrase subunit B [Psychrobacter cryohalolentis K5] Length = 753 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 335/747 (44%), Positives = 459/747 (61%), Gaps = 48/747 (6%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P Sbjct: 2 MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Sbjct: 62 DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 121 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205 Y ++ +G+ D + A + TGT++ F PS+D+F+ F YD L RLRELSFLNS Sbjct: 122 YHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSG 180 Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 V+I L D+R + E +KGG+ FVSY++ K + I D IS+++A++W Sbjct: 181 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQW 238 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ KK+K + GDD REG Sbjct: 239 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVAATGDDAREG 298 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L+E+P K+I K++DA Sbjct: 299 LTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDA 358 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 + RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR Sbjct: 359 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 418 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 + QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTD Sbjct: 419 KTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 478 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 479 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 538 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 ++ I+ L ++D + + + ++ + + + Sbjct: 539 STIDNTRLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTD 598 Query: 626 --SDQEINVSLASKLANRLNF--------------------------------------- 644 D++ + L +L Sbjct: 599 ITYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMRPVVAVE 658 Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 ++ S+ + + + ++L+ S I S S Sbjct: 659 ESDSSDTEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDED 718 Query: 705 LSLIC----NGDKIKITGPCSLLDTIF 727 + K+ I L + Sbjct: 719 TFIRRDATAGTTKVPIRDFDYLWQQMM 745 >gi|72388579|gb|AAZ67933.1| DNA gyrase subunit B [Psychrobacter submarinus] Length = 749 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 341/742 (45%), Positives = 468/742 (63%), Gaps = 44/742 (5%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P Sbjct: 1 KRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPV 60 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Sbjct: 61 DVHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 120 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205 Y ++ +G+ D+ + A + TGT++ F PSSD+F+ F+YD L RLRELSFLNS Sbjct: 121 YSQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSSDVFTGTVFDYDILAKRLRELSFLNSG 179 Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 V+I L D+R + E +KGG+ FVSY++ K+ + + D I++++A++W Sbjct: 180 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGIAVEVALQW 237 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K +V GDD REG Sbjct: 238 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAVSGDDAREG 297 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 ++++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P AK I K++DA Sbjct: 298 LSAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAAKAIANKIIDA 357 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 + RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR Sbjct: 358 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRSR 417 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 + QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D +D +K+RYHKIIIMTD Sbjct: 418 KTQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKVRYHKIIIMTD 477 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 537 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 ++ + I+ L ++D + + T ++ + + + Sbjct: 538 STIDNTKLHVSEDAPAITGQALETLLNDYNQTQLIKARLQIRFPATLLDALTHTPKLSTD 597 Query: 626 S--DQEINVSLASKLANRLN------------------------------------FIAE 647 D+ ++L +LN A+ Sbjct: 598 MTYDKSAMQEWQAQLQTQLNQFGDELSPEIELVNIHEPQPENMDAAAADLLGMTPALTAD 657 Query: 648 KSEKSWHGSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 +SE + +++ + + ++L+ S I S S Sbjct: 658 ESEAADSDALSTKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLEDS 717 Query: 705 LSLICNGDKIKITGPCSLLDTI 726 + + LD + Sbjct: 718 AFIRREAGSGTTKDSDTRLDYL 739 >gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanogenic archaeon RC-I] gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured methanogenic archaeon RC-I] Length = 635 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 304/644 (47%), Positives = 426/644 (66%), Gaps = 11/644 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + +YDA SIQ+L+GL+AV+KRPSMYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSNEVPAQTYDASSIQVLEGLEAVRKRPSMYIGSTDY-RGLHHLVYEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N +GS TV+DNGRGIP ++H++ A E++MT LHAGGKF+ ++YKVSGGL Sbjct: 60 CNAIDVTINPNGSVTVTDNGRGIPVEMHEKYKKPALEIVMTILHAGGKFDNRTYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ +KR G ++ + G + + G + TGT+ TF P Sbjct: 120 HGVGVSVVNALSEYLEVEVKRNGKVFFQRYEKGKPVCEVKIIGET-DQTGTKTTFKPDKS 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F +D L +RLREL++LN ++I+L D + + E +GGI F+ YL++ K Sbjct: 179 IFETVEFQFDILANRLRELAYLNKGIRITLSDLGAQKSAEYHY--EGGINQFIEYLNQDK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L PI + +D ++++M++NDGY E +L F NNI +GGTHLSG R+ALTR + Sbjct: 237 TVLHPKPIYFEREKDTTKVEISMQYNDGYSEVILAFANNINTHEGGTHLSGFRAALTRTV 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K + G+D REG T+++S+K+ +P+F QTK KL +S+V+ +VES V Sbjct: 297 NDYARKNNMLK-GDMVLSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDVKGIVESLV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 DGL+ +LEE+P +A+ I++K + A R+AAR+AR+LTRRK L+ ++LPGKLADCSE+ Sbjct: 356 GDGLNDYLEENPADARKIIEKTVQAFQAREAARKARELTRRKSALEGSTLPGKLADCSEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K EL++VEGDSAGGSAKQGR+R QAILPLRGKILNVE+AR +K+L S EI LITA Sbjct: 416 DASKCELYIVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLNKILESAEIRALITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTG+G+D F ++K RYHKII+MTDADVDGAHIRTLLLTFF+R M ++ GF+YI +PP Sbjct: 476 LGTGVGED-FVLDKARYHKIILMTDADVDGAHIRTLLLTFFYRYMQQIVEAGFVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK +YV + L + L + G ++ L + +D Sbjct: 535 LYRIKKGKEEKYVYSDRELNEALEAMGRTNVSIQRYKGLGEMNPEQLWST-----TMDPA 589 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + Y + IE + + + + N Sbjct: 590 TRTMYQVKLEDVIEADRTFTLLMGDKVEPRREFIVKNAKFVKNL 633 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 32/188 (17%) Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS------------------ 680 RLN I E +E L+ + GV E FVL+ + Sbjct: 457 KARLNKILESAEIR---------ALITALGTGVGEDFVLDKARYHKIILMTDADVDGAHI 507 Query: 681 --SIFSFGSKY-KRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISM 736 + +F +Y ++I L I G + K + L + + ++GR +S+ Sbjct: 508 RTLLLTFFYRYMQQIVEAGFVYIAQPPLYRIKKGKEEKYVYSDRELNEALEAMGRTNVSI 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLW TT++P TR++ +VK+ D +AD F+ LMGD+VEPRREFI +N+ Sbjct: 568 QRYKGLGEMNPEQLWSTTMDPATRTMYQVKLEDVIEADRTFTLLMGDKVEPRREFIVKNA 627 Query: 797 LPS-ALDI 803 LD+ Sbjct: 628 KFVKNLDV 635 >gi|6018679|emb|CAB57876.1| DNA gyrase B subunit [Photobacterium damselae subsp. damselae] Length = 676 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 321/678 (47%), Positives = 436/678 (64%), Gaps = 10/678 (1%) Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVGVSVVNALS ++L I R G+I+ + +G+ PL V G + TG Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKVELTIYRHGHIHRQIYRHGVPQAPLEVIGDT-DRTG 59 Query: 171 TEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 T + F PSS+ F+ F Y+ L RLRELSFLNS V I L D+R E ++ Y+GGI+ Sbjct: 60 TTIRFWPSSETFTNTTFQYEILAKRLRELSFLNSGVSIKLNDER-EEGKQDHFMYEGGIQ 118 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 AFV +L+R+K P+ Q R++ I++++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL Sbjct: 119 AFVEHLNRNKTPIHQKVFHFNVEREDGITVEVAMQWNDGFQENIYCFTNNIPQRDGGTHL 178 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G R ALTR + +Y+EK SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVS Sbjct: 179 AGFRGALTRTLNNYMEKEGYSKKAKAATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVS 238 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SEV+S VES + + L +L E+P +AK + K++DAS R+AAR+AR++TRRKG LD+A Sbjct: 239 SEVKSAVESTMGEKLGEFLLENPGDAKTVCTKIIDASRAREAARKAREMTRRKGALDLAG 298 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML Sbjct: 299 LPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 358 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SSQE+ TLITA+G GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP LI Sbjct: 359 SSQEVATLITAMGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELI 418 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY + +GK QY+KD+E ++ + + +L + ++ L N Sbjct: 419 ERGHIYIAQPPLYKVKKGKQEQYIKDDEDMQQFQTSLALENAALFTTEGAPAMAGLALEN 478 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN--VSLASKLANRLNFIAE 647 + KLI+ + + + V E + + + + LN Sbjct: 479 LVGQYNSTMKLIERMSRRYPTLLLNELVHQPRLTAEMLSDRAQVEAWVTPVIEALNAKQS 538 Query: 648 -----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + N+ V GV ++ L I S S + Sbjct: 539 GESHYTFDIVVDSENNHFLPKVVVRTHGVDHEYPLSFELICSKEYSKLADLSEVLNGLLD 598 Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + K + +L+ + R+G+S+QRYKGLGEMN QLWETT++P++R + Sbjct: 599 DSAYVQRGERKQPVASFKEVLEWLNKESRRGLSLQRYKGLGEMNPDQLWETTMDPESRRM 658 Query: 763 LRVKITDASQADDLFSRL 780 +RV I DA AD+LF+ L Sbjct: 659 MRVTINDAVAADELFTTL 676 >gi|72388561|gb|AAZ67924.1| DNA gyrase subunit B [Psychrobacter pacificensis] Length = 750 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 337/752 (44%), Positives = 462/752 (61%), Gaps = 54/752 (7%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D Sbjct: 1 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 60 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 +H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y Sbjct: 61 IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120 Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206 ++ +G+ D + A + TGT++ F PSSD+F+ F YD L RLRELSFLNS V Sbjct: 121 RQTYTDGVPDADIQQ-MEATDQTGTQIRFYPSSDVFTGTVFEYDILAKRLRELSFLNSGV 179 Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 +I L D+R + RE +KGG+ FVSY++ K + + D IS+++A++W Sbjct: 180 RIVLTDERIDKRRE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWT 237 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 D Y+E VLCFTNNIPQKDGGTHLSG RSALTR + SY+++ KK+K + GDD REG Sbjct: 238 DTYNEKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGL 297 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K+++A+ Sbjct: 298 TAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIMEAA 357 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRK 417 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 ++ I+ L + ++D + + ++ + + + Sbjct: 538 TIDSTKLHVSADAPAITGQALESLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSVDM 597 Query: 627 --DQEINVSLASKLANRLN-----------------------------------FIAEKS 649 D+ + +L+ I ++ Sbjct: 598 TYDESAMQDWQKAMQAQLDVFGSELNPEIELVNIHAPQSQDMDSAAADLLGMTPAIGTEA 657 Query: 650 EKSWHGSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 + G ++++ V + ++L+ S I S S+ Sbjct: 658 ASTAEGEASDNEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSSEYGKLLRLSSEWNTL 717 Query: 701 YLTILSLICNG-----DKIKITGPCSLLDTIF 727 + + I + L + Sbjct: 718 LESDAFIRREASAGTTKDIPVRDFDYLWQQMM 749 >gi|72388585|gb|AAZ67936.1| DNA gyrase subunit B [Psychrobacter glacincola] Length = 756 Score = 660 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 333/726 (45%), Positives = 453/726 (62%), Gaps = 44/726 (6%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P Sbjct: 2 MRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPV 61 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Sbjct: 62 DIHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYH 121 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSS 205 Y ++ +G+ D + A + TGT++ F PS+D+F+ F YD L RLRELSFLNS Sbjct: 122 YHQTYTDGVPDGDIQQ-MEATDQTGTQIRFYPSNDVFTGTVFEYDILAKRLRELSFLNSG 180 Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 V+I L D+R + E +KGG+ FVSY++ K + I D IS+++A++W Sbjct: 181 VRIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINDVFHFISNQDDGISVEVALQW 238 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ KK+K GDD REG Sbjct: 239 TDTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREG 298 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L+E+P K+I K++DA Sbjct: 299 LTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDA 358 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 + RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR Sbjct: 359 ARARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSR 418 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 + QAILPL+GKILNVERARFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTD Sbjct: 419 KTQAILPLKGKILNVERARFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTD 478 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 479 ADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLS 538 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 ++ I+ L ++D + + + ++ + + + Sbjct: 539 STIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTD 598 Query: 626 S--DQEINVSLASKLANRLNFIAE---------------------------------KSE 650 D++ + L +L + E Sbjct: 599 MTYDKDAMQAWKDTLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMKPVVEVE 658 Query: 651 KSWHGSIN------NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 K + + ++L+ S I S S+ Sbjct: 659 KGDSSDAEAVVAKAQWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSSEWNTLLEED 718 Query: 705 LSLICN 710 + + Sbjct: 719 AFIRRD 724 >gi|72388571|gb|AAZ67929.1| DNA gyrase subunit B [Psychrobacter marincola] Length = 751 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 339/739 (45%), Positives = 465/739 (62%), Gaps = 49/739 (6%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D Sbjct: 1 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVSDNGRGVPVD 60 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 +H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y Sbjct: 61 VHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120 Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206 ++ +G+ D+ + A + TGT++ F PSSD+F+ F+YD L RLRELSFLNS V Sbjct: 121 SQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSSDVFTGTVFDYDILAKRLRELSFLNSGV 179 Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 +I L D+R + E +KGG+ FVSY++ K+ + + D I++++A++W Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKEGINEVFHFTSEQDDGIAVEVALQWT 237 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 D Y+E V CFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K +V GDD REG Sbjct: 238 DTYNEKVFCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAVSGDDAREGL 297 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 ++++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P AK I K++DA+ Sbjct: 298 SAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAAKAIANKIIDAA 357 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPSLSELYIVEGDSAGGSAKQGRSRK 417 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D +D +K+RYHKIIIMTDA Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYDPDKVRYHKIIIMTDA 477 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 ++ + I+ L ++D + + T ++ + + + Sbjct: 538 TIDNTKLHVSEDAPAITGQALETLLNDYNQTQLIKARLQIRFPATLLDALTHTPKLSTDM 597 Query: 627 --DQEINVSLASKLANRLN------------------------------------FIAEK 648 D+ ++L +LN A++ Sbjct: 598 TYDESAMQEWQAQLQTQLNQFGDELSPEIELVNIHEPQPENMDAAAADLLGMTPALTADE 657 Query: 649 SEKSWHGSINNSD---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 SE + +++ + + ++L+ S I S S Sbjct: 658 SEAADSDALSTKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLEDSG 717 Query: 706 SLICNG-----DKIKITGP 719 + + I Sbjct: 718 FIRREAGSGTTKNVPIRDF 736 >gi|282761891|gb|ADA84546.1| DNA gyrase subunit beta [Acidovorax citrulli] Length = 762 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 336/766 (43%), Positives = 467/766 (60%), Gaps = 52/766 (6%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF + F+Y Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG+ FV +++ KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 GSR I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E++ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 IGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRRKGVLD LPGKLADC E Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEIFTLIT 476 Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ALGTGIG+ D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L Sbjct: 477 ALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587 + G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + L Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644 + +I+ D+ + N ++ ++ S + A Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656 Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 + + + + + + R G + ++ + ++ Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLLGE 716 Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 ++ + K++ + + + S QRYKGLGEM Sbjct: 717 GAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 762 >gi|291333913|gb|ADD93593.1| DNA gyrase protein subunit B [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 740 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 347/732 (47%), Positives = 483/732 (65%), Gaps = 13/732 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +SYD+ +I +LKGL+AVKKRP MYIGDTD +GLHHMIYEVLDN+IDE+L GY + +T Sbjct: 18 NEASYDSSNITVLKGLEAVKKRPGMYIGDTDDGTGLHHMIYEVLDNSIDEALAGYCENVT 77 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D T+SD+GRGIP D+HK+EGISAAEVIMT+LHAGGKF+ SYKVSGGLHGVG+ Sbjct: 78 VTVHDDSKVTISDDGRGIPVDIHKDEGISAAEVIMTKLHAGGKFDDNSYKVSGGLHGVGI 137 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS +L L + R+G Y + +G + + G N TGT +TF+PS + F Sbjct: 138 SVVNALSEYLLLEVNRDGFSYTQEYKDGTPKS-KLKKGGKSNKTGTSITFIPSLETFGKN 196 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL RLRELSFLNS + I L D+R + R GG+E FV++L++ K + Sbjct: 197 RTFDHDTLFKRLRELSFLNSGLSIILKDER--DGRSSNFKSDGGLEEFVTFLNKKKSVIN 254 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + ++ ++D ++++LA++WND Y EN LC+TNNI QKDGG+HLSG ++ALTR + +++ Sbjct: 255 KPFRFLKETKDGMAVELALQWNDSYQENTLCYTNNIFQKDGGSHLSGFKTALTRSLNNFM 314 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 EK K + G+D REG T+V+S+K+PDP+FSSQTK+KLVSSE++ VVE L Sbjct: 315 EKEGYLKSGDLTPSGEDVREGLTAVISVKLPDPKFSSQTKDKLVSSEIKPVVEQETYKHL 374 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L E+P EAK I K++DAS R+AAR+AR++TRRKGVLD LPGKLADC E+DP Sbjct: 375 NDFLLENPGEAKQIATKIIDASRAREAARKAREMTRRKGVLDGIGLPGKLADCQEKDPSL 434 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEG+SAGGSAKQGR+R NQAI P++GKILNVERAR DK+L+S EI +ITALG G Sbjct: 435 SELYIVEGESAGGSAKQGRNRHNQAIYPMKGKILNVERARIDKVLNSDEIVNIITALGCG 494 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 + ++ FD+ KLRYH ++IMTDADVDG+HIRTLLLTFF+R MP ++ G ++I +PPLY + Sbjct: 495 L-KEDFDLEKLRYHSVVIMTDADVDGSHIRTLLLTFFYRHMPEVLEAGHIFIAQPPLYKV 553 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 RGKS +Y+K++ L +L+N+ E I +K V ++ D + + + ++ Sbjct: 554 GRGKSEEYIKNDSMLRSFLVNKISQETILHLTKTKKV-TEQDFSSMLASYNSMMDFVESS 612 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-AEKSEKSWHGSINNS-DI 662 N FIE + S FN Q+ + + + LN I AE E ++ + Sbjct: 613 SNNAPTLFIEAILNSKDFN----QKTIAAWLKDINSNLNKISAEDIEIKVDLDKDSKSRL 668 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG-PCS 721 ++ + G +L S S G K F + + + K + T Sbjct: 669 IISQTEHGNTLATILPISFFKSKGYKLIMDFKKKSDGIKPNSSFFMKGEAKKEFTDNLID 728 Query: 722 LLDTIFSIGRKG 733 + +F +KG Sbjct: 729 FFEELFEDSKKG 740 >gi|146295090|ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408666|gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 637 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 291/638 (45%), Positives = 414/638 (64%), Gaps = 6/638 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 3 TTKNPNQEYTASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFC 61 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN+ YKVSGGLH Sbjct: 62 KNIDVIIHRDNSVTVLDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNESVYKVSGGLH 121 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS +L++ + R+G +Y + G L V G TGT+VTFLP +I Sbjct: 122 GVGASVVNALSRYLEVEVYRDGKVYYQKYERGKPVCDLKVIGQT-QRTGTKVTFLPDDEI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F +F+ D L RLREL+FLN ++I+ D+R P+ I + Y GGI FV +L+R+K+ Sbjct: 181 FETIEFDADVLLQRLRELAFLNKGIRITFTDEREKNPKTIELKYDGGIAEFVKFLNRNKE 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI I+G ++ I +++A+++ D + EN+ F NNI DGGTHL G ++A+T+ + Sbjct: 241 VLHPEPIYIEGEKNQILVEVAIQYTDQFGENIYSFANNIATIDGGTHLVGFKAAVTKAVN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y +K K ++G+D R+G T+V+S+K+ +P+F QTK KL +SE R VE+ V+ Sbjct: 301 EYAKKYNF-VKGDNQLLGEDIRDGMTAVVSVKIHEPQFEGQTKTKLGNSEARWAVENLVS 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + L+A+LEE+P +K I+ K L A+ R+ AR+AR+L + K LD ++LPGKLADCSE+ Sbjct: 360 EKLAAFLEENPDVSKKIIDKALLAAKAREEARKARELVIKRKSALDSSNLPGKLADCSEK 419 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP+K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI A Sbjct: 420 DPEKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASPDKIYSNDKLLPLIQA 479 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG D D+ KLRYHK+I+M DADVDG+HIRTLLLTFF+R M LI NG +YI +PP Sbjct: 480 LGCGIGNDL-DLKKLRYHKVIVMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY IT+GK ++Y +++ L+ + + +++ F + ++ +D A +I Sbjct: 539 LYKITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAEELWETTMDPARRILLR 597 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 ++ + + V E N L Sbjct: 598 VELEDAVMAEEIFTILMGEKVEPRREFIEKNAKYVRNL 635 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 563 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMG++VEPRRE Sbjct: 564 MKDAQVQRFKGLGEMNAEELWETTMDPARRILLRVELEDAVMAEEIFTILMGEKVEPRRE 623 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 624 FIEKNAKYVRNLDI 637 >gi|288561862|gb|ADC53567.1| DNA gyrase subunit beta [Acidovorax avenae] Length = 762 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 337/766 (43%), Positives = 466/766 (60%), Gaps = 52/766 (6%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF + F+Y Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG+ FV +++ KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 GSR I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E++ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 IGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRRKGVLD LPGKLADC E Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT Sbjct: 417 KDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476 Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ALGTGIG+ D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L Sbjct: 477 ALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587 + G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + L Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644 + +I+ D+ + N ++ ++ S + A Sbjct: 597 GTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656 Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 + + + + + + R G + V+ + ++ Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFVHGADYAALAEAAHTFRGLLGE 716 Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 ++ + K+ + + + S QRYKGLGEM Sbjct: 717 GAKVLRGEGERQREEKVGDFRQAMAWLIKEAERTTSRQRYKGLGEM 762 >gi|260221774|emb|CBA30674.1| DNA gyrase subunit B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 731 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 336/737 (45%), Positives = 456/737 (61%), Gaps = 37/737 (5%) Query: 98 VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI------ 151 + +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L I+R+G ++ + F Sbjct: 1 MALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTIRRDGKVHTLEFSKGFVQN 60 Query: 152 ------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204 NGI +P+ + G GTEV FLP ++IF + F+Y+ L RLRELSFLN+ Sbjct: 61 RIVETQNGIEVSPMKIIGDTE-KRGTEVHFLPDTEIFKENNDFHYEILSKRLRELSFLNN 119 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD-----NISI 259 V+I L D+RS + GG++ FV+Y+++ K L + G R NI + Sbjct: 120 GVRIRLKDERSGKE--DDFAGAGGVQGFVNYVNKGKTVLHPNVFHAMGDRQSDQGTNIGV 177 Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319 ++AM+WN G++E VLCFTNNIPQ+DGGTHL+GLR+A+TR I+ Y+E++ +KK K V G Sbjct: 178 EVAMQWNSGFNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVISKYIEQNEMAKKAKVEVTG 237 Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379 DD REG VLS+K+P+P+FSSQTK+KLVSSEVR VE V L+ +LEE P +AKIIV Sbjct: 238 DDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRGPVEDIVGKLLADYLEERPNDAKIIV 297 Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 K+++A+ R+AAR+ARD+TRRKGVLD LPGKLADC E+DP E+++VEGDSAGGSA Sbjct: 298 GKIIEAARAREAARKARDMTRRKGVLDGMGLPGKLADCQEKDPAMCEIYIVEGDSAGGSA 357 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ-------DSFDI 492 KQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLITALGTGIG+ D F++ Sbjct: 358 KQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKAGGSTGGDDFNV 417 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552 KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + GK Y Sbjct: 418 AKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKSGKEELY 477 Query: 553 VKDEESLEDYLINQSLSEEIELFCD-SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ L+ YL+ +L + +S + L +I D Sbjct: 478 LQGPAELDGYLLRIALVNASVYTGGPNGTTLSGDTLAELARKHQLAQAVIARLKNFMDAE 537 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGV 671 + V N ++ + VS A+ A + + + + + + R G Sbjct: 538 ALRSVADGVVLNLDTVADAEVSAAALQAKLPDA---EVAGEFDARTDKPILRISRRHHGN 594 Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DKIKITGPCSLLDTIF 727 + VL + +N ++ + K++ + + Sbjct: 595 VKSSVLTQDFVHGADYAALAEAANTFRGLLSEGARVMRGEGEKQKEEKVSDFREAMAWLI 654 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 + S QRYKGLGEMN +QLWETT++P R LLRV+I DA +AD +F+ LMGDEVEP Sbjct: 655 GEAERTSSRQRYKGLGEMNPAQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEP 714 Query: 788 RREFIQENSLPS-ALDI 803 RR+FI+ N+L + +D+ Sbjct: 715 RRDFIETNALRAGNIDV 731 >gi|288561856|gb|ADC53564.1| DNA gyrase subunit beta [Acidovorax citrulli] Length = 762 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 336/766 (43%), Positives = 464/766 (60%), Gaps = 52/766 (6%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF + F+Y Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG+ FV +++ KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 GSR I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E++ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 IGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRRKGVLD LPGKLADC E Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476 Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ALGTGIG+ D F+++KLRYH+IIIMTDADVDGAHIR LLLTFF+RQMP L Sbjct: 477 ALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDGAHIRALLLTFFYRQMPEL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587 + G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + L Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + +I+ D+ + N ++ ++ S + A Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELTTT 656 Query: 648 KSEKSWHGS----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 G + + + R G + ++ + ++ Sbjct: 657 GVPAEVAGEFGARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLLGE 716 Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 ++ + K++ + + + S QRYKGLGEM Sbjct: 717 GAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 762 >gi|72388569|gb|AAZ67928.1| DNA gyrase subunit B [Psychrobacter jeotgali] Length = 754 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 338/757 (44%), Positives = 460/757 (60%), Gaps = 59/757 (7%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D Sbjct: 1 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVSDNGRGVPVD 60 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 +H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y Sbjct: 61 IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 120 Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206 + ++ +G+ D+ + A + TGT++ F PS+D+F+ F YD L RLRELSFLNS V Sbjct: 121 QQTYTDGVPDSEIQQ-MEATDKTGTQIRFYPSTDVFTGTVFEYDILAKRLRELSFLNSGV 179 Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 +I L D+R + E +KGG+ FVSY++ K + + D IS+++A++W Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGVNEVFHFTSEQDDGISVEVALQWT 237 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K GDD REG Sbjct: 238 DTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRVLNSYMDRENLFKKEKVVATGDDAREGL 297 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 T+++S+K+PDP+FSSQTK+KLVSSEVRS VES ++D S +L E+P K + K++DA+ Sbjct: 298 TAIVSVKVPDPKFSSQTKDKLVSSEVRSAVESAMHDRFSDYLLENPTAGKAVANKIIDAA 357 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRK 417 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 ++ I+ L ++D + + ++ + + + Sbjct: 538 TIDNTKLHVSADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDM 597 Query: 627 DQEI--NVSLASKLANRL-----------------------------NFIAEKSEKSWHG 655 + + KL +L + + K + + Sbjct: 598 TYDKSVMEAWKEKLQTQLSHFGSDLSPEIELINIHAPVSEAMDAVTADLLGMKPQPTPEP 657 Query: 656 SINN--------------------SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN 695 I+N + + ++L+ I S S Sbjct: 658 EIDNLTDDNIESAPESEMLSTKAQWLPRITIYVHQLAHHYLLDAGFINSGEYSKLLRLSA 717 Query: 696 RIEENYLTILSLIC-----NGDKIKITGPCSLLDTIF 727 + N +I + L + Sbjct: 718 EWNTLLEDTAFIRRESTTGNSKEIAVRDFDYLWQQMM 754 >gi|295694693|ref|YP_003587931.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912] gi|295410295|gb|ADG04787.1| DNA gyrase, B subunit [Bacillus tusciae DSM 2912] Length = 635 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 305/636 (47%), Positives = 412/636 (64%), Gaps = 11/636 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N +YD IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L GY Sbjct: 1 MAEK-SNLTYDESQIQVLEGLEAVRKRPGMYIGATSS-RGLHHLVWEVVDNSIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV DNGRGIP H + G EV++T LHAGGKF+ K YKVSGGL Sbjct: 59 CDHIVVRVNPDNSVTVIDNGRGIPVGTHPKLGKPTVEVVLTVLHAGGKFDGKGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ + REG+ Y + G+ PL G + TGT+VTF P + Sbjct: 119 HGVGVSVVNALSEWLEVEVWREGSAYRQRYSRGVPVTPLERLGPT-DRTGTQVTFKPDPE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F YD LQ RLREL+FLN+ + I L + + + R Y+GGI +FV YL+R K Sbjct: 178 IFEDVVFQYDILQGRLRELAFLNAGITIIL--EDARDGRRQEFAYQGGIRSFVEYLNRSK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q P+ I +D++ +++A+++NDGY ++ F NNI +GGTH SG +SALTR I Sbjct: 236 EVLHQPPVYIAAEKDDVMVEVALQYNDGYVPSLYSFANNIHTHEGGTHESGFKSALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K +V G+D REG T+++S+K+PDP+F QTK KL +SEVR +VES Sbjct: 296 NDYARKNNLLKDSDSNVTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEVRGIVESAF 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +LEE+P A+ IV K + A+ R+AAR+AR+LTRRK L+++SLPGKL DCS + Sbjct: 356 GERFVVFLEENPAVARKIVDKCITAARAREAARKARELTRRKNALEVSSLPGKLWDCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D +SEL+LVEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+LS+ EI +ITA Sbjct: 416 DASESELYLVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARMDKILSNNEIRAIITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGI + FDI++ RYHK++IMTDADVDG+HIRTLLLTFF+R M LI G++YI +PP Sbjct: 476 IGTGI-EPDFDISRARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I +GK ++Y ++ + + G + L +D Sbjct: 535 LYRIQKGKVVRYAYSDQERDHIVGELKGDVNDIQRYKGLGEMDAEQLWET-----TMDPE 589 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + IE I V + + + + Sbjct: 590 SRTLLQVSMQDAIEADAIFSVLMGDRVEPRREFIEA 625 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 5/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + I E + S +V Sbjct: 440 RHFQAIL--PLRGKILNVEKARMDKILSNNEIRAIITAIGTGIEPDFDISRARYHKVVIM 497 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + I + + L I G ++ D I Sbjct: 498 TDADVDGSHIRTLLLTFFYRYMRPLIEAGYVY-IAQPPLYRIQKGKVVRYAYSDQERDHI 556 Query: 727 FSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + ++ +QRYKGLGEM+A QLWETT++P++R+LL+V + DA +AD +FS LMGD V Sbjct: 557 VGELKGDVNDIQRYKGLGEMDAEQLWETTMDPESRTLLQVSMQDAIEADAIFSVLMGDRV 616 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRREFI+ ++ LDI Sbjct: 617 EPRREFIEAHAHFVRNLDI 635 >gi|168702514|ref|ZP_02734791.1| DNA gyrase subunit B [Gemmata obscuriglobus UQM 2246] Length = 810 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 310/811 (38%), Positives = 450/811 (55%), Gaps = 16/811 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ + N Y D++Q LK ++ RP MYIG+TD G+HH+++EV+ N++DE+L G+ Sbjct: 3 TETLGNVGYTEDNLQTLKDAAHIRHRPGMYIGNTD-IEGMHHLVWEVVYNSVDEALAGFC 61 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I +T++ D S TVSD+GRGIP + + G S E +T + GKFN +YK S GLH Sbjct: 62 KNIFITVHSDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLH 121 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 G+G +NALS W IKR+G +Y+M F G + L G A TGT +TF P + Sbjct: 122 GMGAKAMNALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPE 181 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F+YD L R +++SFLN ++++L D+R + T + GI +V L+R + Sbjct: 182 KFGDILFDYDRLGTRFQQISFLNKGLKLALADERVGKS--DTFHSERGIAEYVEVLNRSE 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I I D +++++ ++ G + +CFTNN KDGGTHLSG R LTR I Sbjct: 240 QTNYP-LIYINKQIDGVTVEVCFQYTQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K+ + + GDD REG T+V++I P P+F SQTK KL S EV S V Sbjct: 299 GHYGKKAN--LFKEIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLADCSE 419 + LS +LE +P EA+ I KKVL + R AA++ARD + RK L+ LPGKL DCS Sbjct: 357 YEVLSDYLERNPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD + +ELFLVEGDSAGGSA+ GR RE QAILPLRGK+LNVE+A+F+K+L + EI LI+ Sbjct: 417 RDRENTELFLVEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALIS 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G I D++K+RY KIIIMTDADVDG HIRTLLLTFFFRQM LI G +++ +P Sbjct: 477 AVGVDIDNVE-DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV---ISKNDLRNFIDDALK 596 PLY +T+ K ++++ E + L + L IS ++L + + Sbjct: 536 PLYKVTQKKETRFIQSREEMVTQLTTRGLKNTTLRATQVDRPARDISGDELTKLLPLLDE 595 Query: 597 IDKLIKDFYPNHD--KTFIEQAV--ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + +AV + +N ++ F +++ Sbjct: 596 AESAVVGLERRGRNLDELLTRAVDGLFPTYNLYEREKNKEHWFRTTDEVAAFKQALADEL 655 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + D + + F F + +L +G Sbjct: 656 KREPVVGEDYTLDEWHDLKSLNRAVTKLKAFGFDAADLVPLQRIAGREPPVRYTLDHDGS 715 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + L+ I +G KGI++ R+KGLGEM+ +LW TTL+P R+LL+V + DA + Sbjct: 716 NKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKVTLNDAFK 775 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 A+++F LMG EV+ R+ FI NSL S DI Sbjct: 776 AEEMFRTLMGKEVQDRKAFIFSNSLKSVEDI 806 >gi|288561858|gb|ADC53565.1| DNA gyrase subunit beta [Acidovorax cattleyae] Length = 762 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 337/766 (43%), Positives = 465/766 (60%), Gaps = 52/766 (6%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPRRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF F+Y Sbjct: 120 GKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENYDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG+ FV +++ KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFAGSGGVMGFVQFINASKKVLHPNAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 GSR I +++AM+WNDG++E+VLCFTNNIPQ+DGGTHL+GLR+A+TR Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVLCFTNNIPQRDGGTHLTGLRAAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E++ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 IGKYIEQNEMAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRRKGVLD LPGKLADC E Sbjct: 357 VAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT Sbjct: 417 KDPAMSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476 Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ALGTGIG+ D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L Sbjct: 477 ALGTGIGKASADGTGRSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDL 587 + G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + L Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGETL 596 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644 + +I+ D+ + N ++ ++ S + A Sbjct: 597 STLAQKHQVAEAVIERLSAFMDREALRAIADGVSLNLDTVEDAEASAVALQAKLRELTTT 656 Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 + + + + + + R G + V+ + ++ Sbjct: 657 GVPAEVAGEFDARTDKPVLRISRRHHGNIKSSVITQDFVHGADYAALAEAAHTFRGLLGE 716 Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 ++ + K+ + + + S QRYKGLGEM Sbjct: 717 GAKVLRGEGERQREEKVGDFRQAMSWLIKEAERTTSRQRYKGLGEM 762 >gi|288561860|gb|ADC53566.1| DNA gyrase subunit beta [Acidovorax konjaci] Length = 762 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 340/766 (44%), Positives = 462/766 (60%), Gaps = 52/766 (6%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF DF+Y Sbjct: 120 GKVHVLEFSQGFVQNRILETANGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENHDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG++ FV +++ +KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVKGFVDFINANKKVLHPTAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 G+R I +++AM+WNDGY E VLCFTNNIPQ+DGGTHL+GLR+A+TR Sbjct: 237 ATGTRPADTYGGIPGTEIGVEVAMQWNDGYSEQVLCFTNNIPQRDGGTHLTGLRAAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y+E+ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 IGKYIEQQELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVEDI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V L+ +LEE P +AKI+ K+++A+ R+AARRAR++TRRKGVLD LPGKLADC E Sbjct: 357 VAKTLTDYLEERPNDAKILCGKIIEAARAREAARRAREMTRRKGVLDGMGLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TLIT Sbjct: 417 KDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLIT 476 Query: 480 ALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ALGTGIG+ D F+++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L Sbjct: 477 ALGTGIGKASADGTGKSGADDFNVDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPEL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG-VISKNDL 587 + G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + L Sbjct: 537 VERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQPRTLDGETL 596 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF--- 644 + +I+ D+ + N ++ Q+ S + A Sbjct: 597 ATLAQKHQVAEGVIERLSVFMDREALRAIADGVALNLDTVQDAEASAVALQAKLRELTTT 656 Query: 645 -IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 + + + + + + R G + ++ + +N Sbjct: 657 GVPAEVAGEFDARTDKPILRISRRHHGNIKSSIITQDFVHGADYAALAEAANTFRGLLAE 716 Query: 704 ILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 K+ + + + S QRYKGLGEM Sbjct: 717 GAKAQRGEGDRQRDEKVGDFRQAMAWLIKEAERTTSRQRYKGLGEM 762 >gi|52783861|ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580] gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2] gi|52346363|gb|AAU38997.1| GyrB [Bacillus licheniformis ATCC 14580] gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2] Length = 637 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 288/586 (49%), Positives = 409/586 (69%), Gaps = 5/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q ++YD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY I Sbjct: 3 QQNNYDENQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCTEIN 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGLHGVG Sbjct: 62 VAIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L + + R+G I+ F G+ L V G TGT F P +IF+ Sbjct: 122 SVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDPEIFTET 180 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YDTL R+REL+FL V+I++ DKR + R+ Y+GGI+++V +L+R ++ + Sbjct: 181 TEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIH 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + P+ I+GS+D I++++A+++ND Y N+ F NNI +GGTH +G ++ LTR I Y Sbjct: 241 EEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ K+ ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ ++ ++ L Sbjct: 301 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEAL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P AK IV+K + A+ R AA++AR+LTRRK L++++LPGKLADCS +DP Sbjct: 361 EKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTI 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG Sbjct: 421 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPLY + Sbjct: 481 IGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKV 539 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK ++Y +++ LE+ L + + G ++ L Sbjct: 540 QQGKRVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWE 585 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 441 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 498 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I + L + G +++ L+ I Sbjct: 499 TDADVDGAHIRTLLLTFFYRYMRQIIEQGYVY-IAQPPLYKVQQGKRVEYAYNDQQLEEI 557 Query: 727 FSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + G+ QRYKGLGEMNA+QLWETT++P+TR+LL+V + DA AD+ F LMG Sbjct: 558 LKELPQNPKPGL--QRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEMLMG 615 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+EN+ LDI Sbjct: 616 DKVEPRRNFIEENARYVKNLDI 637 >gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580] gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580] Length = 639 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 288/586 (49%), Positives = 409/586 (69%), Gaps = 5/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q ++YD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY I Sbjct: 5 QQNNYDENQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCTEIN 63 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGLHGVG Sbjct: 64 VAIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGA 123 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L + + R+G I+ F G+ L V G TGT F P +IF+ Sbjct: 124 SVVNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTE-VTGTTTHFKPDPEIFTET 182 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YDTL R+REL+FL V+I++ DKR + R+ Y+GGI+++V +L+R ++ + Sbjct: 183 TEYDYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIH 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + P+ I+GS+D I++++A+++ND Y N+ F NNI +GGTH +G ++ LTR I Y Sbjct: 243 EEPVYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ K+ ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ ++ ++ L Sbjct: 303 RRNGVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEAL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P AK IV+K + A+ R AA++AR+LTRRK L++++LPGKLADCS +DP Sbjct: 363 EKFLLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTI 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALGTG Sbjct: 423 SELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPLY + Sbjct: 483 IGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKV 541 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK ++Y +++ LE+ L + + G ++ L Sbjct: 542 QQGKRVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWE 587 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 443 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 500 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I + L + G +++ L+ I Sbjct: 501 TDADVDGAHIRTLLLTFFYRYMRQIIEQGYVY-IAQPPLYKVQQGKRVEYAYNDQQLEEI 559 Query: 727 FSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + G+ QRYKGLGEMNA+QLWETT++P+TR+LL+V + DA AD+ F LMG Sbjct: 560 LKELPQNPKPGL--QRYKGLGEMNATQLWETTMDPETRTLLQVTLKDAIDADETFEMLMG 617 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+EN+ LDI Sbjct: 618 DKVEPRRNFIEENARYVKNLDI 639 >gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061] gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061] Length = 640 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 293/591 (49%), Positives = 413/591 (69%), Gaps = 5/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q++SYD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MAMEQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITV + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGL Sbjct: 60 CTDITVQIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L + + R+G I+ F G+ L + G + TGT F+P ++ Sbjct: 120 HGVGASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDTE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F+YDTL +R+REL+FL V I + D R + R Y+GGI+++V +L+R Sbjct: 179 IFTETIEFDYDTLANRVRELAFLTKGVNIVIEDLREGKERRNEYCYEGGIKSYVEHLNRS 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + + P+ I+G +D I++++A+++ND Y N+ F NNI +GGTH +G ++ LTR Sbjct: 239 KEVVHEEPVYIEGEKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRV 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ +S Sbjct: 299 INDYARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSL 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +L E+P AK IV+K + A+ R AA++AR+LTRRK L+++SLPGKLADCS Sbjct: 359 FSEALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++IT Sbjct: 419 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +P Sbjct: 479 ALGTGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PL+ + +GK ++YV +++ L++ L + + G ++ L Sbjct: 538 PLFKVQQGKRVEYVYNDKQLDELLKTLPQTPKPGLQRYKGLGEMNATQLWE 588 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 8/201 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLL 723 V + F + + I + + + + + LL Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLFKVQQGKRVEYVYNDKQLDELL 561 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 T+ + G+ QRYKGLGEMNA+QLWETT++PD R+LL+V + DA AD+ F LMGD Sbjct: 562 KTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPDARTLLQVTLEDAIDADETFEMLMGD 619 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR FI+EN+ LDI Sbjct: 620 KVEPRRNFIEENAQYVKNLDI 640 >gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51] gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2] gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51] gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2] Length = 644 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 295/588 (50%), Positives = 404/588 (68%), Gaps = 5/588 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + I + Y+A I++L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY D Sbjct: 9 ETIPTNDYNAGQIEVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCD 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT++ D S +V DNGRGIP D+H + G A EV +T LHAGGKF+ +YKVSGGLHG Sbjct: 68 TIEVTIHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDI 181 VG+SVVNALS+WL + ++++GNIY F+ G L V G N TGT +TF P +I Sbjct: 128 VGMSVVNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEI 187 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F +DTL HRLRELSFLN V I+LID R + ++ GGI FV Y++R K+ Sbjct: 188 FEDTVFLFDTLAHRLRELSFLNKKVSITLIDAREDKK--EVYYHTGGIYDFVKYINRSKE 245 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI + +D + ++++M++NDGY EN+ + NNI +GGTH SG ++ALTR Sbjct: 246 SLHPEPIYFEAEKDGVQVEVSMQYNDGYVENLFSYANNIHTHEGGTHESGFKAALTRVAN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ ++ G+D REG T+V+S+K+P+P+F QTK KL +SE+RS+V+S Sbjct: 306 DYARKNNILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITG 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 +GLSA+ EE+P K +++K + AS R+AAR+AR+LTRRK L++++LPGKLADCS ++ Sbjct: 366 EGLSAFFEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKE 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++L + EI +ITA+ Sbjct: 426 AELCEMYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAM 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI + FDI K RYHK++IMTDADVDGAHIR LLLTFFFR M L+ N ++YI +PPL Sbjct: 486 GTGI-SEDFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + + +GK + YV E L G ++ L Sbjct: 545 FKVKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYKGLGEMNAEQLWE 592 Score = 181 bits (459), Expect = 5e-43, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + + LV V + Sbjct: 461 ILNVEKARLDRILGNAEIRAMITAMGTGISEDFDIEKARYHKLVIMTDADVDGAHIRILL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F + +N + + + D + L IGR + +QRYK Sbjct: 521 LTFFFRYMKPLLENNYVYIAQPPLFKVKKGKDIHYVYSNEELAKLQDEIGRDRVEIQRYK 580 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT++P R++L+V + DA +AD+LF+ LMGD VEPRREFIQ+N+ Sbjct: 581 GLGEMNAEQLWETTMDPAKRTILQVTMEDAIKADELFTILMGDVVEPRREFIQDNAQYVR 640 Query: 800 ALDI 803 LD+ Sbjct: 641 NLDV 644 >gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV, B subunit [Thermincola sp. JR] gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR] Length = 635 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 303/620 (48%), Positives = 416/620 (67%), Gaps = 14/620 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + N +Y A IQ+L+GL+AV++RP MYIG T GLHH++YEV+DN+IDE+L G+ D Sbjct: 2 EQNTNHNYGASQIQVLEGLEAVRRRPGMYIGSTS-TRGLHHLVYEVVDNSIDEALAGFCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V ++ D S TV DNGRGIP D+H + G A EV++T LHAGGKF YKVSGGLHG Sbjct: 61 KIEVIIHHDNSITVIDNGRGIPVDIHPKIGKPAVEVVLTILHAGGKFGGDGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WL++ +KR+ +IY + G+ L + G + N TGT++TF P +IF Sbjct: 121 VGVSVVNALSEWLEVEVKRDNHIYHQRYERGLPVTELKIIGDS-NSTGTKITFKPDHEIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN++TL RL+ELSFLN + I L D+R + E T ++GGI FV +L+++K Sbjct: 180 EDLVFNFETLSQRLKELSFLNKGLTIILKDER--DGNEKTFQHEGGIIDFVKHLNKNKDV 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L PI +G +D++ +++A+++NDGY EN+ F NNI +GGTH +G ++ALTR + Sbjct: 238 LHPEPIYFEGEKDDVMVEIALQYNDGYTENIFSFVNNIHTHEGGTHEAGFKTALTRVVND 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K+++ ++ G+D REG T+++S+K+ +P+F QTK KL +SEVR +V++ V + Sbjct: 298 YARKYNLLKENENNLTGEDIREGLTAIISVKVREPQFEGQTKTKLGNSEVRGIVDAVVVE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 G+ +LEEHP AK I +K ++A+ R+AAR+AR+LTRRK L+ SLPGKLADCS +DP Sbjct: 358 GVGTFLEEHPPFAKRITEKAINAARAREAARKARELTRRKNALESTSLPGKLADCSLKDP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 EL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI +ITA+G Sbjct: 418 AVCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKVLANEEIRAMITAMG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI G++YI +PPLY Sbjct: 478 TGI-SDDFDISKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLY 536 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + K YV + LE L G ++ L + + Sbjct: 537 KVKKNKIDNYVYSDHELEKLLNQIGREGVSLQRYKGLGEMNPEQLW---------ETTMN 587 Query: 603 DFYPNHDKTFIEQAVISGVF 622 + +E A+I+ Sbjct: 588 PETRTILRVNLEDAMIADEI 607 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V ++ + + + S L+ V + + Sbjct: 452 ILNVEKARLDKVLANEEIRAMITAMGTGISDDFDISKARYHKLIIMTDADVDGAHI--RT 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLLDTIFSIGRKGISMQR 738 + +F +Y R +KI + L + IGR+G+S+QR Sbjct: 510 LLLTFFYRYMRPLIEAGYVYIAQPPLYKVKKNKIDNYVYSDHELEKLLNQIGREGVSLQR 569 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+TR++LRV + DA AD++F+ LMGD+VEPRREFIQ ++ Sbjct: 570 YKGLGEMNPEQLWETTMNPETRTILRVNLEDAMIADEIFTILMGDKVEPRREFIQTHAKE 629 Query: 799 S-ALDI 803 LDI Sbjct: 630 VRNLDI 635 >gi|224994125|dbj|BAH28875.1| DNA gyrase subunit B [Psychrobacter aquimaris] Length = 737 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 333/740 (45%), Positives = 458/740 (61%), Gaps = 49/740 (6%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H Sbjct: 1 MYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHP 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y + Sbjct: 61 EEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQT 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + +G+ D + + TGT++ F PSSD+F+ F YD L RLRELSFLNS V+I Sbjct: 121 YTDGVPDADIQQ-MEPTDKTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIV 179 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R + E +KGG+ FVSY++ K + + + D IS+++A++W D Y Sbjct: 180 LTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGISVEVALQWTDTY 237 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 +E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K GDD REG T++ Sbjct: 238 NEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAI 297 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K++DA+ R Sbjct: 298 VSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAARAR 357 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 DAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QA Sbjct: 358 DAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQA 417 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVD Sbjct: 418 ILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVD 477 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 478 GSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTID 537 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE 629 I+ L ++D + + ++ + + + + Sbjct: 538 NTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDMTYD 597 Query: 630 --INVSLASKLANRLNF----IAEKSE--------------------------KSWHGSI 657 + + +L+ ++ + E ++ G Sbjct: 598 LPAMQAWKDAMQTQLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMKPAVETIDGEA 657 Query: 658 NNSDIL---------VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 ++S++L + + ++L+ S I S S + Sbjct: 658 SDSEVLSAKAQWLPRITVYVHQLAHHYLLDASFINSSEYSKLLRLSAEWNTLLAEDAFIR 717 Query: 709 CNG-----DKIKITGPCSLL 723 I + L Sbjct: 718 REATAGTTKDIPVRDFDYLW 737 >gi|20090442|ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina acetivorans C2A] gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina acetivorans C2A] Length = 634 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 301/589 (51%), Positives = 403/589 (68%), Gaps = 7/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD YDA IQ+L+GL+AV+KRPSMYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSDKQV---YDASRIQVLEGLEAVRKRPSMYIGSTDS-RGLHHLVYEVVDNSIDEALAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + VT+N DGS TV DNGRGIP D H SA EV+MT LHAGGKF++ +YKVSGGL Sbjct: 57 CTRVDVTINPDGSVTVLDNGRGIPIDPHPVHKKSALEVVMTVLHAGGKFDKNTYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL + ++R+G Y +I G + + TG TGT+ TF P + Sbjct: 117 HGVGVSVVNALSEWLNVEVERDGKKYFQRYIRGKPEAEVQETG-TSEITGTKTTFKPDAR 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF DF YD L +RLREL+FLN + I+L D RSPE + T Y GGI FV YL++ K Sbjct: 176 IFETTDFQYDILSNRLRELAFLNRGLTINLKDLRSPEGQAETFIYSGGIVEFVEYLNKKK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL + PI + RD++ +++AM++ + Y ENV F NNI +GGTH+ G ++ALTR Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQYTNSYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y++ + K+ + GDD REG T+++S+K+ +P+F QTK +L +SEV+ +V+S V Sbjct: 296 NDYIKANK-LSKEDAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 DGL+ + EE+P A +I++K L A R+AA++AR+LTRRK L++++LPGKLADCSE+ Sbjct: 355 TDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+++VEG+SAGGSAKQGR R QAILPLRGKILNVE++R K+L + E+ +LITA Sbjct: 415 DPSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTG+ + F + RYHK+I+MTDADVDGAHIRTLLLT FFR M LI G++YI +PP Sbjct: 475 LGTGV-SEDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GKS Y+ + LE G ++ L Sbjct: 534 LYRIKKGKSEYYIHSDRELEVKKKELGEKGLAIQRYKGLGEMNPEQLWE 582 Score = 187 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + + + ++ V + Sbjct: 451 ILNVEKSRLAKILKNNEVVSLITALGTGVSEDFALESARYHKVILMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F I + + + + + I L +G KG+++QRYK Sbjct: 511 LTLFFRYMRPLIDAGYVYIAQPPLYRIKKGKSEYYIHSDRELEVKKKELGEKGLAIQRYK 570 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799 GLGEMN QLWETT+NP++R+LL+V + DA +AD++F LMGDEVEPRR FI+ ++ Sbjct: 571 GLGEMNPEQLWETTMNPESRTLLQVTLEDALRADEIFRVLMGDEVEPRRNFIETHAKEVV 630 Query: 800 ALDI 803 LDI Sbjct: 631 DLDI 634 >gi|312877900|ref|ZP_07737845.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311795326|gb|EFR11710.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 637 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 291/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 5 NTNSQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 64 IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G +Y + G L V G N TGT+VTFLP +IF Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NSTGTKVTFLPDDEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R + I + Y GGI FV +L+R+K+ L Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIELKYDGGIAEFVKFLNRNKEVL 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++A+++ + + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 243 HQEPIYIEGEKNDILIEVAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +E+ L+ + + +++ F + ++ +D A +I ++ Sbjct: 541 KITKGKQVRYAYNEKELQRI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQRILQE- 563 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 624 FIEKNAKYVRNLDI 637 >gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 637 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 291/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 5 NTNSQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 64 IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G +Y + G L V G N TGT+VTFLP +IF Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIGET-NRTGTKVTFLPDDEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R + I + Y GGI FV +L+R+K+ L Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNAKPIELKYDGGIAEFVKFLNRNKEVL 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++A+++ + + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 243 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +E+ L+ + + +++ F + ++ +D A +I ++ Sbjct: 541 KITKGKQVRYAYNEKELQRI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQRILQE- 563 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 624 FIEKNAKYVRNLDI 637 >gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032] gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus SAFR-032] Length = 642 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 295/588 (50%), Positives = 412/588 (70%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q++SYD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 6 EQQHNSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCTD 64 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ITV + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 65 ITVQIEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 124 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L + + R+G I+ F G+ L + G + TGT F+P +IF+ Sbjct: 125 GASVVNALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGET-DVTGTTTHFVPDPEIFT 183 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL +R+REL+FL V I + D R + R Y+GGI+++V +L+R K+ Sbjct: 184 ETIEFDYDTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEV 243 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + P+ I+G RD I++++A+++ND Y N+ F NNI +GGTH +G ++ LTR I Sbjct: 244 VHEEPVYIEGERDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 303 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ +S ++ Sbjct: 304 YARKNGVFKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSE 363 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L E+P AK IV+K + A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP Sbjct: 364 ALEKFLLENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDP 423 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 424 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 483 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 484 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 542 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++YV +++ L++ L + S + + G ++ L Sbjct: 543 KVQQGKRVEYVYNDKQLDELLKSLSQTPKPGLQRYKGLGEMNAAQLWE 590 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 503 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITG---PCSL 722 V + F + + I + + L + G +++ + L Sbjct: 504 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYVYNDKQLDEL 562 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L ++ + G+ QRYKGLGEMNA+QLWETT++PD R+LL+V + DA AD+ F LMG Sbjct: 563 LKSLSQTPKPGL--QRYKGLGEMNAAQLWETTMDPDARTLLQVTLEDAIDADETFEMLMG 620 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+EN+ LDI Sbjct: 621 DKVEPRRNFIEENAQYVKNLDI 642 >gi|301629588|ref|XP_002943920.1| PREDICTED: DNA gyrase subunit B-like [Xenopus (Silurana) tropicalis] Length = 554 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 331/552 (59%), Positives = 428/552 (77%), Gaps = 4/552 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++YD+ SI++LKGLDAV+KRP MYIGDTD SGLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEE-NTNTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I++ ++ D S TV DNGRGIP D+HKEEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L ++R G I+E ++++G+ P+ + G + TGT++ F PS + Sbjct: 120 HGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVGESE-TTGTQIHFRPSDE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 179 TFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + Q D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 237 TAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 297 NTYIEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 S +L E+P EAK++V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 GKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PP Sbjct: 477 LGCGIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPP 536 Query: 541 LYGITRGKSLQY 552 LY + + KS Sbjct: 537 LYKVKKDKSRLQ 548 >gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002] gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 650 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 287/636 (45%), Positives = 417/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 18 NTNSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 76 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 77 IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 136 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G +Y + G L V G + TGT+VTFLP +IF Sbjct: 137 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 195 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R + + + Y GGI FV +L+R+K+ L Sbjct: 196 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVELKYDGGIAEFVKFLNRNKEVL 255 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++A+++ + + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 256 HQEPIYIEGEKNDILIEIAIQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 315 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 316 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSER 374 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 375 LAAFLEENPDISKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 434 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 435 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 494 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 495 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 553 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +++ L+ ++ + +++ F + ++ +D A +I ++ Sbjct: 554 KITKGKQVRYAYNDKELQK-VLQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 612 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 613 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 648 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L + Sbjct: 519 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKVLQE- 576 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 577 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 636 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 637 FIEKNAKYVRNLDI 650 >gi|222528063|ref|YP_002571945.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725] gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725] Length = 650 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 287/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 18 NTNSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 76 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 77 IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 136 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G +Y + G L V G + TGT+VTFLP +IF Sbjct: 137 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 195 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R + + + Y GGI FV +L+R+K+ L Sbjct: 196 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPVELKYDGGIAEFVKFLNRNKEVL 255 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++A+++ + + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 256 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 315 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 316 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSER 374 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 375 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 434 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 435 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 494 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 495 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 553 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +++ L+ + + +++ F + ++ +D A +I ++ Sbjct: 554 KITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 612 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 613 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 648 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 519 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 576 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 577 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 636 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 637 FIEKNAKYVRNLDI 650 >gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108] gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108] Length = 637 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 288/636 (45%), Positives = 415/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 5 QNGSQQYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 64 IEVVIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G +Y + G L V G + TGT+VTFLP +IF Sbjct: 124 GASVVNALSRYLEVEVYRDGKVYYQRYERGKPTCELKVIG-TTDRTGTKVTFLPDDEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R + I + Y GGI FV +L+R+K+ L Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFVDEREKNVKPIELKYNGGIAEFVKFLNRNKEVL 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++A+++ + + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 243 HQEPIYIEGEKNDILIEVAVQYTEDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 303 AKKYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHKIIIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 482 VGIGNDI-DLKKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +++ L+ + + +++ F + ++ +D A +I ++ Sbjct: 541 KITKGKQVRYAYNDKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 600 LEDAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 635 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNDKELQKILQE- 563 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 623 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 624 FIEKNAKYVRNLDI 637 >gi|268318257|ref|YP_003291976.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252] gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252] Length = 649 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 306/597 (51%), Positives = 409/597 (68%), Gaps = 10/597 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + S+Y A +IQIL+GL+AV+KRP+MYIGD G GLHH++YEV+DNAIDE++ GY Sbjct: 3 TRPAEASNYVASNIQILEGLEAVRKRPAMYIGDV-GIRGLHHLVYEVVDNAIDEAMAGYC 61 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+N DGS TV DNGRGIP D H E SA EV+MT LHAGGKF++ +YKVSGGLH Sbjct: 62 DRIAVTINEDGSITVEDNGRGIPVDEHPTEKRSALEVVMTTLHAGGKFDKSTYKVSGGLH 121 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSS 179 GVGVS VNALS L +KR+G ++ ++ G +P+ +TGT V F P Sbjct: 122 GVGVSCVNALSRKLIATVKRDGYVWRQTYAYGKPTSPVERVRPMREDEETGTIVQFWPDP 181 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISL--IDKRSPEPREITMFYKGGIEAFVSYLD 237 IF +F +DTL RLREL++LN V+IS+ + R +++GG+ FV YLD Sbjct: 182 TIFKTVEFRFDTLAERLRELAYLNRGVRISIEDRREEDESLRYEEYYFEGGLVEFVQYLD 241 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + P+ I I G D++ +++A+R+NDGY ENVL F NNI +GGTH++G R+ALT Sbjct: 242 ETRTPIHDEVIYIAGEADDVVVEVALRYNDGYAENVLSFVNNINTHEGGTHVAGFRTALT 301 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + +Y EK+ K K + G+D REG T+V+S+K+P+P+F QTK KL +SEV+ +V Sbjct: 302 RTLKAYAEKNNLLKNFKGELSGEDFREGLTAVISVKVPEPQFEGQTKTKLGNSEVQGIVA 361 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V++ LS WLE+HP EA+ I+ KV+ A+ R AAR+AR+L +RK L+ +SLPGKLADC Sbjct: 362 GIVSEHLSRWLEDHPREARRILDKVILAAQARVAARKARELVQRKNALNGSSLPGKLADC 421 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 + RDP K ELFLVEGDSAGGSAKQ R+RE QAILPLRGKILNVE+AR DK+L + EI + Sbjct: 422 ASRDPSKCELFLVEGDSAGGSAKQARNREFQAILPLRGKILNVEKARLDKILENDEIRNI 481 Query: 478 ITALGTGIG--QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +TALGTG+ ++ FD++KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQ+ L+ G++Y Sbjct: 482 VTALGTGLATTEEDFDLSKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQLRPLVEGGYIY 541 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRN 589 I PPLY + GK+ +Y +E L + + G ++ L Sbjct: 542 IALPPLYRVKVGKTERYAWSDEELRQIVEELTDGQPQRAVIQRYKGLGEMNPEQLWE 598 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 42/68 (61%), Positives = 54/68 (79%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QLWETT+NP+TR L +V + DA+ AD +FS LMGD VEPRR+FI+ N Sbjct: 582 IQRYKGLGEMNPEQLWETTMNPETRILQQVTVEDAAAADRIFSILMGDAVEPRRKFIERN 641 Query: 796 SLPSALDI 803 + + LD+ Sbjct: 642 ARYATLDV 649 >gi|199601525|dbj|BAG70958.1| DNA gyrase subunit B [Psychrobacter pulmonis] Length = 626 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 326/624 (52%), Positives = 434/624 (69%), Gaps = 5/624 (0%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D Sbjct: 2 RPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVD 61 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 +H EEG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y Sbjct: 62 IHPEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHY 121 Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206 ++ +G+ D + A N TGT++ F PS+D+F+ F YD L RLRELSFLNS V Sbjct: 122 HQTYTDGVPDADIQQ-MEATNKTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGV 180 Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 +I L D+R + E +KGG+ FVSY++ K + + D IS+++A++W Sbjct: 181 RIVLTDERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFTSEQDDGISVEVALQWT 238 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR + SY+++ KK+K GDD REG Sbjct: 239 DTYNEKVLCFTNNIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKIVATGDDAREGL 298 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 T+++S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K++DA+ Sbjct: 299 TAIVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIIDAA 358 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ Sbjct: 359 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRK 418 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA Sbjct: 419 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 478 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 479 DVDGSHIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 538 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 ++ I+ L ++D + + + ++ + + + Sbjct: 539 TIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDM 598 Query: 627 DQEI--NVSLASKLANRLNFIAEK 648 + + + L +L Sbjct: 599 TYDKSVMEAWKASLQTQLEHFGSD 622 >gi|302870737|ref|YP_003839373.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47] Length = 638 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 289/634 (45%), Positives = 415/634 (65%), Gaps = 6/634 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ GY I Sbjct: 8 EKQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGYCKNIE 66 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ D S TV D+GRGIP D+H + S EV+ T LHAGGKFN++ YKVSGGLHGVG Sbjct: 67 VIIHKDNSVTVIDDGRGIPVDIHPKLQKSGVEVVFTVLHAGGKFNERVYKVSGGLHGVGA 126 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS +L++ + R+G +Y + G L V G + TGT+VTFLP +IF Sbjct: 127 SVVNALSCYLEVEVYRDGKVYYQRYEKGKPVCELKVIG-TTDKTGTKVTFLPDDEIFETI 185 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+ D + RLREL+FLN ++I +D+R P+ + + Y GGI FV +L+R+K+ L Q Sbjct: 186 EFDGDVILQRLRELAFLNKGIRIVFLDEREKNPKPVELKYDGGIAEFVKFLNRNKEVLHQ 245 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI I+G +++I I++A+++ D + EN+ F NNI DGGTHL G ++A+T+ + Y + Sbjct: 246 EPIYIEGEKNDILIEVAVQYTDDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEYAK 305 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ L+ Sbjct: 306 KYNFIK-GDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEKLA 364 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKK 424 +LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP K Sbjct: 365 TFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDPAK 424 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG G Sbjct: 425 CEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALGVG 484 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY I Sbjct: 485 IGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLYKI 543 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 T+GK ++Y +E+ L+ + + +++ F + ++ +D A +I ++ Sbjct: 544 TKGKQVRYAYNEKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELE 602 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 603 DAVMAEEIFTILMGDKVEPRREFIEKNAKYVRNL 636 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 507 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQKILQE- 564 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV++ DA A+++F+ LMGD+VEPRRE Sbjct: 565 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVELEDAVMAEEIFTILMGDKVEPRRE 624 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 625 FIEKNAKYVRNLDI 638 >gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL] gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL] Length = 637 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 292/636 (45%), Positives = 416/636 (65%), Gaps = 6/636 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N Y A IQ+L+GL+AV+KRP MYIG T + GLHH++YE++DNAIDE++ G+ Sbjct: 5 NNSTQEYSASEIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVYEIVDNAIDEAMAGFCKN 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ S TV D+GRGIP D+H + G S EV+ T LHAGGKFN++ YKVSGGLHGV Sbjct: 64 IEVVIHKGNSVTVIDDGRGIPVDIHPKLGKSGVEVVFTVLHAGGKFNERVYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G IY + G L V G + TGT+VTFLP +IF Sbjct: 124 GASVVNALSRYLEVEVYRDGKIYYQRYERGRPTCELKVIG-TTDKTGTKVTFLPDDEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ D + RLREL+FLN ++I +D+R P+ + + Y GGI FV +L+R+K+ L Sbjct: 183 TIEFDGDVILQRLRELAFLNKGIRIVFLDEREKNPKPVELKYDGGIAEFVKFLNRNKEVL 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +++I I++AM++ D + EN+ F NNI DGGTHL G ++A+T+ + Y Sbjct: 243 HQEPIYIEGEKNDILIEVAMQYTDDFGENIYSFANNIATIDGGTHLIGFKTAVTKAVNEY 302 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K ++G+D R+G T+++S+K+ +P+F QTK KL +SE R VE+ V++ Sbjct: 303 AKKYN-LTKGDTQLLGEDIRDGMTAIVSVKIHEPQFEGQTKTKLGNSEARWAVENLVSEK 361 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDP 422 L+A+LEE+P +K I+ K + A+ R+ A++AR+L + K LD ++LPGKLADCSE+DP Sbjct: 362 LAAFLEENPDVSKKIIDKAILAAKAREEAKKARELVIKRKSALDSSNLPGKLADCSEKDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAKQGR R QAILPL GK+LNVE+A DK+ S+ ++ LI ALG Sbjct: 422 AKCEIFIVEGDSAGGSAKQGRDRRYQAILPLWGKMLNVEKASQDKIYSNDKLLPLIQALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG D D+ KLRYHK+IIM DADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY Sbjct: 482 VGIGNDI-DLKKLRYHKVIIMADADVDGSHIRTLLLTFFYRYMRPLIENGHIYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 IT+GK ++Y +E+ L+ + + +++ F + ++ +D A +I ++ Sbjct: 541 KITKGKQVRYAYNEKELQKI-LQEMKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVE 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + + V E N L Sbjct: 600 IEDAVMAEEIFTILMGDRVEPRREFIEKNAKYVRNL 635 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + I L I G +++ L I Sbjct: 506 VDGSHIRTLLLTFFYRYMRPLIENGHIY-IAQPPLYKITKGKQVRYAYNEKELQKILQE- 563 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMNA +LWETT++P R LLRV+I DA A+++F+ LMGD VEPRRE Sbjct: 564 MKDAQVQRFKGLGEMNAQELWETTMDPARRILLRVEIEDAVMAEEIFTILMGDRVEPRRE 623 Query: 791 FIQENSLPS-ALDI 803 FI++N+ LDI Sbjct: 624 FIEKNAKYVRNLDI 637 >gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 638 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 293/588 (49%), Positives = 412/588 (70%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 61 INIQIEKDNSITVIDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L + + R+G I+ ++ G+ + L + G + TGT F+P +IF+ Sbjct: 121 GASVVNALSTELVVTVHRDGKIHRQTYKRGVPVSDLEIIGETDH-TGTTTHFVPDPEIFT 179 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++YD L +R+REL+FL V I++ DKR + R+ Y+GGI+++V YL+R K+ Sbjct: 180 ETTVYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI I+G +D I++++A+++ND Y N+ FTNNI +GGTH +G ++ LTR I Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K++ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ + Sbjct: 300 YARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSA 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L ++ E+P AK IV K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +DP Sbjct: 360 ALETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++Y +++ LED L + + G ++ L Sbjct: 539 KVQQGKRVEYAYNDKELEDLLKTLPQTPKPGLQRYKGLGEMNATQLWE 586 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 131/332 (39%), Gaps = 37/332 (11%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548 D ++ G +R L + P G L+ + + Sbjct: 311 DPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSAALETFMLENPD 370 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 + + + D+ + + S IS +L + D D I + Y Sbjct: 371 AAKKIVDKGLMAARARMAAKKARELTRRKSALEIS--NLPGKLADCSSKDPSISELYIVE 428 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662 + A + ++ + + + RL+ I +E G + ++ Sbjct: 429 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNL 488 Query: 663 LVKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKI 716 R + V ++G+ I + F +Y R I N L + G +++ Sbjct: 489 EKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEY 548 Query: 717 ----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 LL T+ + G+ QRYKGLGEMNA+QLWETT++P +R+LL+V + DA Sbjct: 549 AYNDKELEDLLKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMD 606 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+ F LMGD+VEPRR FI+ N+ LDI Sbjct: 607 ADETFEMLMGDKVEPRRNFIEANARYVKNLDI 638 >gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY] gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5] gi|121887|sp|P05652|GYRB_BACSU RecName: Full=DNA gyrase subunit B gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis] gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis] gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str. 168] gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195] gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5] Length = 638 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 291/588 (49%), Positives = 411/588 (69%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 61 INIQIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L + + R+G I+ ++ G+ L + G + TGT F+P +IF Sbjct: 121 GASVVNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEIIGETDH-TGTTTHFVPDPEIFS 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +++YD L +R+REL+FL V I++ DKR + R+ Y+GGI+++V YL+R K+ Sbjct: 180 ETTEYDYDLLANRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI I+G +D I++++A+++ND Y N+ FTNNI +GGTH +G ++ LTR I Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K++ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ + Sbjct: 300 YARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFST 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + ++ E+P AK IV K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +DP Sbjct: 360 AMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++Y +++ LE+ L + + G ++ L Sbjct: 539 KVQQGKRVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWE 586 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSL 722 V + F + + I + + L + G +++ L Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKELEEL 558 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L T+ + G+ QRYKGLGEMNA+QLWETT++P +R+LL+V + DA AD+ F LMG Sbjct: 559 LKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMG 616 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+ LDI Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638 >gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653] gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653] Length = 654 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 311/584 (53%), Positives = 415/584 (71%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 24 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 82 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 83 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 142 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G ++ + G+ PL V G +TGT +TF P +IF Sbjct: 143 SVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE-ETGTIITFKPDKEIFEEI 201 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YD L RLREL+FLN + I LID+R + Y+GG+ AFV YL+R+K+ L + Sbjct: 202 VFDYDILAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGLIAFVKYLNRNKEVLHE 259 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y+EN+ F NNI K+GGTHL G +SALT+ I Y + Sbjct: 260 EPIYMEAKNTDYEVEVCMQYNDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAK 319 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K ++++ G+D REG T+++S+K+ +P+F QTK +L + E+RS+VE V + LS Sbjct: 320 KYGMIKDGEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLS 379 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P A+IIV+K L A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 380 AYLEENPSVARIIVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKC 439 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI ++ITALGTGI Sbjct: 440 ELFIVEGDSAGGSAKAGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRSIITALGTGI 499 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI+KLRYHK+IIMTDADVDG+HIRTLLLTFFFR M LI NG +YI +PPLY IT Sbjct: 500 GED-FDISKLRYHKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKIT 558 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L + G ++ + L Sbjct: 559 KGKKVYYAYSDRELDKILSEIGRENIVVQRYKGLGEMNADQLWE 602 Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + + S ++ V + Sbjct: 471 ILNVEKARLDKILSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLL 530 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + I + + L + IGR+ I +QRYK Sbjct: 531 LTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEIGRENIVVQRYK 590 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 591 GLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 650 Query: 800 ALDI 803 LDI Sbjct: 651 NLDI 654 >gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1] Length = 665 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 308/583 (52%), Positives = 420/583 (72%), Gaps = 4/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A+ IQIL+GL+AV+KRP MYIG T GLHH++YEV+DN+IDE+L GY I V Sbjct: 35 EGDYGANQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGYCTHIEV 93 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S TV+DNGRGIP D+H E G A EV++T LHAGGKF YKVSGGLHGVGVS Sbjct: 94 TIHKDNSITVTDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGSGYKVSGGLHGVGVS 152 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ +++++KR+G I+E++F G+ PL V G ++TGT V F+P ++IF Sbjct: 153 VVNALSTNMEVKVKRDGKIHEITFEKGVTKEPLKVVGQT-DETGTLVHFVPDAEIFDETV 211 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+HRLRELSFLN + I L D+R E R+ T +++GGI +FV +L+R+K+ + Sbjct: 212 YDYDTLRHRLRELSFLNRGITIILTDERPEEVRQETFYFEGGISSFVEHLNRNKEVINPE 271 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 P+ G++D +++A+++N Y EN+ F NNI ++GGTHL+G +SALTR + + Sbjct: 272 PVYFNGTKDTTVVEIALQYNTSYSENIYSFVNNINTEEGGTHLAGFKSALTRAANDFARR 331 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ +++G+D REG T V+SIK+ +P+F QTK KL +SEVR +V+S V++GLS Sbjct: 332 QGIIKNNEDNLVGEDIREGLTCVISIKLREPQFEGQTKTKLGNSEVRGIVDSIVSEGLSE 391 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P+ +K I++K + AS R+AAR+AR+LTRRK L+++SLPGKLADCS +DP+++E Sbjct: 392 YFEENPVISKKIIEKSIMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPEQAE 451 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI T+ITA G+GIG Sbjct: 452 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIRTMITAFGSGIG 511 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M LI NG +YI +PPLY I + Sbjct: 512 SE-FDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGHVYIAQPPLYQIRK 570 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G+S Y +E L L G ++ L Sbjct: 571 GRSHWYTYSDEELAQKLDEIGRDGITVQRYKGLGEMNPEQLWE 613 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFS----FGSK 688 ++L LN ++ + GS S+ + + G + ++G+ I + F + Sbjct: 488 ARLDKILNNEEIRTMITAFGSGIGSEFDITKRRYGKIIIMTDADVDGAHIRTLLLTFFYR 547 Query: 689 YKR-IFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRYKGLGEMN 746 Y R + N L I G L + IGR GI++QRYKGLGEMN Sbjct: 548 YMRPLIENGHVYIAQPPLYQIRKGRSHWYTYSDEELAQKLDEIGRDGITVQRYKGLGEMN 607 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPSALD 802 QLWETT++P+ R++L+V + +A +AD +F+ LMGD+VEPRR FI+E++ L LD Sbjct: 608 PEQLWETTMDPEKRTVLQVHLREAEEADSIFTILMGDKVEPRRRFIEEHANLVRNLD 664 >gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1] gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1] Length = 641 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 295/594 (49%), Positives = 407/594 (68%), Gaps = 10/594 (1%) Query: 1 MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ SSYDA IQ+L+GL+AV++RP MYIG T GLHH++YE++DN+IDE Sbjct: 1 MAEQDTWTVSGASSYDASQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L GY + I V ++ D S V DNGRGIP D+H + G A EV +T LHAGGKF + YK Sbjct: 60 ALAGYCNRIDVIIHDDNSIEVIDNGRGIPVDIHPKMGKPAVEVALTVLHAGGKFGGEGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG+SVVNALS L++ ++R G I+E + G+ + L V G + +TGT + F Sbjct: 120 VSGGLHGVGLSVVNALSEKLRVTVRRNGKIHEQHYERGVATSELRVVGQSK-ETGTTIYF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P IF +++YDTL HRLRELSFLN V+I+L DKRS + + GGI FV + Sbjct: 179 KPDPQIFDELEYSYDTLSHRLRELSFLNRGVRITLTDKRSGQES--VFAHSGGIVDFVKF 236 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+R+K + I Q +D + +++A+++NDGY EN+ + NNI ++GGTH +G ++A Sbjct: 237 LNRNKDVIHNEVIYFQTEKDGVHVEVALQYNDGYVENLFSYANNINTQEGGTHEAGFKTA 296 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y + K ++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR + Sbjct: 297 LTRVVNEYARRLNQLKDNENNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++S V +G+ +LEEHP AK I++K + A R+AAR+AR+LTRRK L+ SLPGKLA Sbjct: 357 IDSCVTEGVGTYLEEHPSIAKRIIEKAIGAMRAREAARKARELTRRKTALESTSLPGKLA 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +DP EL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+LS++EI Sbjct: 417 DCSFKDPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKVLSNEEIR 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +ITA+GTGIG+D FD++K RYH+I +MTDADVDG+HIRTLLLTFF+R M LI NG++Y Sbjct: 477 AIITAMGTGIGED-FDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I +PPLY + + + ++Y + L YL G ++ L Sbjct: 536 IAQPPLYQVKKNRDVRYFYHDNELNRYLEKTGRDGVTIQRYKGLGEMNPEQLWE 589 Score = 181 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 8/154 (5%) Query: 658 NNSDILVKRIARG-VQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTILS-----LICN 710 + D+ R R + ++GS I + + R IE Y+ I + N Sbjct: 488 EDFDLSKARYHRICLMTDADVDGSHIRTLLLTFFYRHMKPLIENGYVYIAQPPLYQVKKN 547 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 D L + GR G+++QRYKGLGEMN QLWETT++P R++L+V + DA Sbjct: 548 RDVRYFYHDNELNRYLEKTGRDGVTIQRYKGLGEMNPEQLWETTMDPKNRTILQVSLEDA 607 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++A+ +F+ LMGD VEPRR+FIQ ++ LDI Sbjct: 608 AEAELIFTTLMGDRVEPRRDFIQSHAKDVRNLDI 641 >gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242] gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242] Length = 632 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 296/589 (50%), Positives = 407/589 (69%), Gaps = 9/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD YDA IQ+L+GL+AV+KRPSMYIG D GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSD-----DYDATHIQVLEGLEAVRKRPSMYIGSVD-TRGLHHLVYEVVDNSIDEALAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V++N DGS TV D+GRGIP D H + SA EV++T LHAGGKF++ +YKVSGGL Sbjct: 55 CKNIDVSINADGSVTVVDDGRGIPVDNHPKYKKSALEVVLTVLHAGGKFDKSNYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W+++ +KR+G +Y + G + + V G A TGT+ TF+P S Sbjct: 115 HGVGVSVVNALSEWMEVEVKRDGKLYYQRYERGAPTSDVTVIGDAK-GTGTKSTFMPDSQ 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F+Y TL RLREL+FLN ++I++ D R E + Y+GGI +FV +L++ + Sbjct: 174 IFETTEFSYGTLITRLRELAFLNKGIRITITDSREEELEQDVFEYEGGIISFVEHLNQSR 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L ++PI + ++ +++AM++ D Y E V F NNI +GGTHL G ++ALTR Sbjct: 234 TALHKTPIYFEREKEGTIVEIAMQYTDSYGEYVYSFANNINTYEGGTHLIGFKTALTRVA 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y++K+ K + G+D REG +++S+K+ +P+F QTK KL +SE++ +V+S V Sbjct: 294 NDYIKKNNV-VKGDEKLTGEDIREGLAAIISVKLTEPQFEGQTKTKLGNSELKGIVDSMV 352 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++GLS ++EE+P A II +K LDA R+AA++AR+LTRRK L+I +LPGKLADCSE+ Sbjct: 353 SEGLSEYMEENPKVAVIIFQKALDARRAREAAKKARELTRRKSALEIGTLPGKLADCSEK 412 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQGR+R QAILP RGKI+NVE+AR K+L + E+ +LITA Sbjct: 413 DPSVSEVYLVEGDSAGGSAKQGRNRRFQAILPFRGKIINVEKARLSKVLKNNEVLSLITA 472 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGI + ++I K RYHK+IIMTDADVDGAHIRTL+LTFFFR M LI G++YI +PP Sbjct: 473 MGTGI-AEDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPP 531 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GK+ YV + L L + G ++ L Sbjct: 532 LYRIKKGKAEHYVYSDRELAAKLEEIGENNTYVQRYKGLGEMNPEQLWE 580 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 1/153 (0%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + ++ ++ V + F F I + + + + Sbjct: 479 EDYNIEKARYHKVIIMTDADVDGAHIRTLILTFFFRYMAPLIDAGYVYIAQPPLYRIKKG 538 Query: 711 GDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + + L + IG +QRYKGLGEMN QLWETT+NPDTR+LL+V + DA Sbjct: 539 KAEHYVYSDRELAAKLEEIGENNTYVQRYKGLGEMNPEQLWETTMNPDTRTLLQVTMDDA 598 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLP-SALD 802 + AD++FS LMGDEV PR+ FIQ+ + LD Sbjct: 599 AAADEMFSVLMGDEVAPRKAFIQKYAKEVVNLD 631 >gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4] gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter tengcongensis MB4] Length = 654 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 310/584 (53%), Positives = 414/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 24 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 82 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 83 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 142 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G ++ + G+ PL V G +TGT +TF P +IF Sbjct: 143 SVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEVIGETE-ETGTIITFKPDKEIFEEI 201 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YD L RLREL+FLN + I LID+R + Y+GG+ AFV YL+R+K+ L + Sbjct: 202 VFDYDILAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGLIAFVKYLNRNKEVLHE 259 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y+EN+ F NNI K+GGTHL G +SALT+ I Y + Sbjct: 260 EPIYMEAKNTDYEVEVCMQYNDSYNENIYSFANNIDTKEGGTHLIGFKSALTKVINDYAK 319 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K ++++ G+D REG T+++S+K+ +P+F QTK +L + E+RS+VE V + LS Sbjct: 320 KYGMIKDGEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTRLGNPEMRSIVEGVVTEKLS 379 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P A+IIV+K L A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 380 AYLEENPSVARIIVEKALQAARAREAARKARELTRRKSALENTALPGKLADCSEKDPSKC 439 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+ S++EI ++ITALGTGI Sbjct: 440 ELFIVEGDSAGGSAKAGRNSRFQAILPLRGKILNVEKARLDKIFSNEEIRSIITALGTGI 499 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI+KLRYHK+IIMTDADVDG+HIRTLLLTFFFR M LI NG +YI +PPLY IT Sbjct: 500 GED-FDISKLRYHKVIIMTDADVDGSHIRTLLLTFFFRFMKPLIENGHIYIAQPPLYKIT 558 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L + G ++ + L Sbjct: 559 KGKKVYYAYSDRELDKILSEIGRENIVVQRYKGLGEMNADQLWE 602 Score = 183 bits (465), Expect = 9e-44, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + + S ++ V + Sbjct: 471 ILNVEKARLDKIFSNEEIRSIITALGTGIGEDFDISKLRYHKVIIMTDADVDGSHIRTLL 530 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + I + + L + IGR+ I +QRYK Sbjct: 531 LTFFFRFMKPLIENGHIYIAQPPLYKITKGKKVYYAYSDRELDKILSEIGRENIVVQRYK 590 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 591 GLGEMNADQLWETTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 650 Query: 800 ALDI 803 LDI Sbjct: 651 NLDI 654 >gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7] gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7] gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3] Length = 640 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 292/591 (49%), Positives = 412/591 (69%), Gaps = 5/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 1 MAMEQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I + + D S TV DNGRGIP + ++ G A EVIMT LHAGGKF+ YKVSGGL Sbjct: 60 CTDINIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L + + R+G I+ ++ G+ L V G + TGT F+P + Sbjct: 120 HGVGASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF ++YD L +R+REL+FL V I++ DKR + R+ Y+GGI+++V YL+R Sbjct: 179 IFKETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRS 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + + PI I+G +D I++++A+++ND Y N+ FTNNI +GGTH +G ++ LTR Sbjct: 239 KEVIHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRV 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K++ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ Sbjct: 299 INDYARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTL 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L E+P A+ IV+K L A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 359 FSSALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++IT Sbjct: 419 KDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +P Sbjct: 479 ALGTGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY + +GK ++Y +++ L++ L S + G ++ L Sbjct: 538 PLYKVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 588 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722 V + F + + I + + L + G +++ L Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 560 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L + + G+ QRYKGLGEMNA+QLWETT++P TR+LL+V + DA AD+ F LMG Sbjct: 561 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 618 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+ LDI Sbjct: 619 DKVEPRRNFIEANARYVKNLDI 640 >gi|332971209|gb|EGK10172.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Desmospora sp. 8437] Length = 641 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 301/643 (46%), Positives = 422/643 (65%), Gaps = 11/643 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++ +YD IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L G D Sbjct: 6 TVEKKNYDESQIQVLEGLEAVRKRPGMYIGATSS-RGLHHLVWEVVDNSIDEALAGRCDT 64 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV DNGRGIP + + G A EV+MT LHAGGKF+ + YK SGGLHGV Sbjct: 65 IQVTVNEDNSVTVEDNGRGIPVGIQPKVGRPAVEVVMTVLHAGGKFDNEGYKFSGGLHGV 124 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WL++++KREG I+ + G+ ++ L VTG +TGT +TF P +IF+ Sbjct: 125 GVSVVNALSEWLEVQVKREGKIHVQRYRKGVPESDLQVTGKTK-ETGTRITFKPDPEIFT 183 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++Y+ LQ+RLREL+FLN ++I L D+R E + Y GGI +FV +L+++++ Sbjct: 184 ETTEYDYEILQNRLRELAFLNQGLRIMLSDER-GEGKSNEFKYDGGIRSFVEHLNKNRES 242 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L Q PI I+G ++ + + +A+++NDG+ N+ + NNI +GGTH +G +SALTR I Sbjct: 243 LHQPPIFIEGEKEELVVQIALQYNDGFSSNLYSYANNIHTHEGGTHEAGFKSALTRVIND 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K++ ++ GDD REG T+++SIK+PDP+F QTK KL +SE R+V ES + Sbjct: 303 YARRHNLLKENDNNLSGDDTREGLTAIISIKIPDPQFEGQTKTKLGNSEARTVTESIFAE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 A+LEE+P +K ++ K + A+ R+AAR+AR+LTRRK L+++SLPGKLADC+ R Sbjct: 363 QFLAFLEENPAVSKKVINKAVMAARAREAARKARELTRRKNALEVSSLPGKLADCTSRKA 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + SEL+LVEGDSAGG+AKQGR R QAILPLRGKILNVE+AR DK LS++EI T+ TALG Sbjct: 423 EISELYLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKARLDKALSNEEIRTITTALG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F + K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PPLY Sbjct: 483 TGIGED-FQLEKARYHKIMIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLY 541 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLI 601 IT+GK + Y D+ + + ++ G ++ L +D Sbjct: 542 KITQGKKVLYAFDDREKDRIVSELEDKGKVELQRYKGLGEMTATQLWET-----TMDPES 596 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + ++ + E + + N Sbjct: 597 RTLLQVSLEDALDADQVFETLMGEKVEPRREFIQEYAKQVRNL 639 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 8/129 (6%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIGRKGIS 735 + +F +Y R K + ++ + G+ + Sbjct: 515 LLLTFFYRYMRPLIEAGYVYIAQPPLYKITQGKKVLYAFDDREKDRIVSELEDKGK--VE 572 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM A+QLWETT++P++R+LL+V + DA AD +F LMG++VEPRREFIQE Sbjct: 573 LQRYKGLGEMTATQLWETTMDPESRTLLQVSLEDALDADQVFETLMGEKVEPRREFIQEY 632 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 633 AKQVRNLDI 641 >gi|224994123|dbj|BAH28874.1| DNA gyrase subunit B [Psychrobacter nivimaris] Length = 740 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 333/743 (44%), Positives = 455/743 (61%), Gaps = 49/743 (6%) Query: 31 YIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE 90 YIGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H E Sbjct: 1 YIGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPE 60 Query: 91 EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSF 150 EG+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ Sbjct: 61 EGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLEMNIWREGYHYHQTY 120 Query: 151 INGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL 210 +G+ D+ + A + TGT++ F PSSD+F+ F YD L RLRELSFLNS V+I L Sbjct: 121 TDGVPDSDIQQ-MEATDQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVL 179 Query: 211 IDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 D+R + E +KGG+ FVSY++ K + + D IS+++A++W D Y+ Sbjct: 180 TDERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWTDTYN 237 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E VLCFTNNIPQKDGGTHLSG RSALTR + SY+++ KK+K + GDD REG T+++ Sbjct: 238 EKVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGLTAIV 297 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K+++A+ RD Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIANKIMEAARARD 357 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAI Sbjct: 358 AARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAI 417 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG Sbjct: 418 LPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDG 477 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 +HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 478 SHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDN 537 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQ 628 I+ L ++D + + ++ + + + D+ Sbjct: 538 TKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDMTYDE 597 Query: 629 EINVSLASKLANRLNFIAEKSEKS------------------------------WHGSIN 658 + + +L+ G + Sbjct: 598 SAMQDWKTAMQTKLDHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMTPVVGTEEGEAS 657 Query: 659 NSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 +S+ V + ++L+ S I S S+ + + Sbjct: 658 DSEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYSKLLRLSSEWNTLLESDAFIRR 717 Query: 710 NG-----DKIKITGPCSLLDTIF 727 I + L + Sbjct: 718 EASAGTTKDIPVRDFDYLWXQMM 740 >gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 685 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 301/591 (50%), Positives = 410/591 (69%), Gaps = 6/591 (1%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M D + ++ Y A IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L Sbjct: 47 MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D + VT++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF YKVSG Sbjct: 106 GYCDTVGVTIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ + + ++R+G I+ +SF G+ L G + TGT V F+P Sbjct: 165 GLHGVGVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPD 223 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+V +++DTL+HRLREL+FLN + I+L D+R E R T + GGI +FVS+L+R Sbjct: 224 PEIFTVTTYSFDTLKHRLRELAFLNHGITITLTDERGTEVRSETFHFDGGIRSFVSHLNR 283 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ + + PI G +D+I +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR Sbjct: 284 KKETINEEPIYFNGVKDDIVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + K ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR +V+S Sbjct: 344 AANDFARRLNVLKDKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V +GL+ + EE+P K ++ K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 404 IVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+I Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ FD+ K RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ +G +YI + Sbjct: 524 TAFGTGIGEE-FDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I + K Y ++ L G ++ L Sbjct: 583 PPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 633 Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + + ++ V + + Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHI--RT 559 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738 + +F +Y + + DK + IGR G+++QR Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAKKLDEIGRDGVTIQR 619 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+ R++L+V DA AD+LF+ LMGD+VEPRR+FI+EN+ Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENAKL 679 Query: 799 S-ALDI 803 LDI Sbjct: 680 VRNLDI 685 >gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 645 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 309/641 (48%), Positives = 422/641 (65%), Gaps = 8/641 (1%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M + N Y A+ IQIL+GL+AV++RPSMYIGDT G GLHH++YEV+DNAIDE++ G Sbjct: 9 MKTTVANLKEYTANDIQILEGLEAVRRRPSMYIGDT-GIRGLHHLVYEVVDNAIDEAMAG 67 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D ++V + DGS +V DNGRGIP D H + AAEV++T LHAGGKF+ K+Y+VSGG Sbjct: 68 YCDQVSVIVYPDGSVSVEDNGRGIPVDTHPKVNKPAAEVVLTILHAGGKFDNKAYQVSGG 127 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS+WL+L I R+G + + G+ L G A + TGT+V FLP Sbjct: 128 LHGVGVSVVNALSTWLELIIWRDGMEWHQRYSRGVPQCELTPVGKA-DRTGTKVHFLPDD 186 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +DF++D L RLRE++FL ++I L D R+ + + Y GG+ +FV YL+R Sbjct: 187 TIFEEKDFSFDVLSSRLREIAFLVPGLKIDLKDLRNNKS--VAFKYDGGVISFVEYLNRD 244 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K PL + PI I+G +D++ +++A+++ND + E V F N I +GGTH+ G R+ALTR Sbjct: 245 KNPLFKEPIYIKGEKDDVLVEVALQYNDSFQERVFAFANLIHTVEGGTHVVGFRTALTRA 304 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K ++ GDD +EG T+++S+K+ +P+F QTK KL +S+VR +V+S Sbjct: 305 VNEMARRQKLLKDKDANLSGDDLKEGLTAIISVKLKEPQFEGQTKTKLGNSDVRGIVDSI 364 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V DGL A+LEE P + IV+K + A RDAA++AR+L RRK LPGKLADCS Sbjct: 365 VYDGLMAFLEEKPDCLRPIVEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSS 424 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP++ EL++VEGDSAGGSAKQGR+R QAILPLRGKILNVE+AR DK+LS+ EI T+I Sbjct: 425 KDPEECELYIVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQ 484 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG+D FD+NKLRYH++IIMTDADVDGAHIRTLLL FF+R MP +I G LYI +P Sbjct: 485 ALGCGIGED-FDVNKLRYHRVIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQP 543 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + GKS Y ++ L + + + G ++ L D ++ Sbjct: 544 PLYRVQAGKSEYYCYSDKELRNMADKLANKKISVQRYKGLGEMNPEQLWKTTMDPN--ER 601 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 ++K E I E +E S A+++ N Sbjct: 602 ILKRVDVEDALAADEYFTILMGDKVEPRREFIESHANEVRN 642 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 102/262 (38%), Gaps = 2/262 (0%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + +D L+ + + S D ++ D Sbjct: 384 VEKAIKARQARDAAKKARELVRRKSAFGGLDLPGKLADCSSKDPEECELYIVEGDSAGGS 443 Query: 604 FYPNHDKTFIEQAVISG-VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 ++TF + G + N E + V +++ + + + + + Sbjct: 444 AKQGRNRTFQAILPLRGKILNVEKARLDKVLSNAEIRTIIQALGCGIGEDFDVNKLRYHR 503 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I + + + + L Sbjct: 504 VIIMTDADVDGAHIRTLLLAFFYRFMPGIIEGGHLYIAQPPLYRVQAGKSEYYCYSDKEL 563 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + + K IS+QRYKGLGEMN QLW+TT++P+ R L RV + DA AD+ F+ LMG Sbjct: 564 RNMADKLANKKISVQRYKGLGEMNPEQLWKTTMDPNERILKRVDVEDALAADEYFTILMG 623 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRREFI+ ++ LD+ Sbjct: 624 DKVEPRREFIESHANEVRNLDV 645 >gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531] gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531] Length = 685 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 300/591 (50%), Positives = 410/591 (69%), Gaps = 6/591 (1%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M D + ++ Y A IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L Sbjct: 47 MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D + VT++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF YKVSG Sbjct: 106 GYCDTVGVTIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ + + ++R+G I+ +SF G+ L G + TGT V F+P Sbjct: 165 GLHGVGVSVVNALSTEMDVEVRRDGKIFAISFSRGVTTTKLHEIG-TSDTTGTRVHFVPD 223 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+V +++DTL+HRLREL+FLN + I+L D+R E R T + GGI +FVS+L+R Sbjct: 224 PEIFTVTTYSFDTLKHRLRELAFLNHGITITLTDERGAEVRSETFHFDGGIRSFVSHLNR 283 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ + + PI G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR Sbjct: 284 KKETINEEPIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + K+ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR +V+S Sbjct: 344 AANDFARRLNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V +GL+ + EE+P K ++ K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 404 IVTEGLTEYFEENPAVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+I Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ FD+ K RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ +G +YI + Sbjct: 524 TAFGTGIGEE-FDLAKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I + K Y ++ L G ++ L Sbjct: 583 PPLYQIRKDKKHFYTYSDDEQAKKLDELGRDGVTIQRYKGLGEMNPEQLWE 633 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + + ++ V + + Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLAKRRYSKIIIMTDADVDGAHI--RT 559 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738 + +F +Y + + DK + +GR G+++QR Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDDEQAKKLDELGRDGVTIQR 619 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+ R++L+V DA AD+LF+ LMGD+VEPRR+FI+EN+ Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENAKL 679 Query: 799 S-ALDI 803 LDI Sbjct: 680 VRNLDI 685 >gi|21228521|ref|NP_634443.1| DNA gyrase subunit B [Methanosarcina mazei Go1] gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1] Length = 634 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 301/589 (51%), Positives = 403/589 (68%), Gaps = 7/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD YDA IQ+L+GL+AV+KRPSMYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSDKQV---YDASHIQVLEGLEAVRKRPSMYIGSTD-GRGLHHLVYEVVDNSIDEALAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N +GS TV DNGRGIP D H SA EV+MT LHAGGKF++ +YKVSGGL Sbjct: 57 CSEIDVTINPNGSVTVIDNGRGIPIDPHPVHKKSALEVVMTILHAGGKFDKNTYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W ++ + R+G Y +I G ++ + G++ T+ TF P + Sbjct: 117 HGVGVSVVNALSEWTEVEVSRDGKKYFQRYIRGKPESDVREIGTSDTTG-TKTTFKPDTK 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF DF YD L +RLREL+FLN + I+L D RSPE + T Y GGI FV YL++ K Sbjct: 176 IFETTDFQYDILLNRLRELAFLNRGLIINLKDLRSPEGQAETFNYSGGIIEFVEYLNKKK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL + PI + RD++ +++AM++ +GY ENV F NNI +GGTH+ G ++ALTR Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQYTNGYTENVYSFANNINTHEGGTHIIGFKTALTRVA 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y++ + K+ + GDD REG T+++S+K+ +P+F QTK KL +SEV+ +V+S V Sbjct: 296 NDYIKANK-LSKEDEKLTGDDVREGLTAIISVKLMEPQFEGQTKTKLGNSEVKGIVDSLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 DGL+ + EE+P A II+ K L A R+AA++AR+LTRRK L++++LPGKLADCS + Sbjct: 355 TDGLAEYFEENPKVANIILDKALLAQRAREAAKKARELTRRKSALEVSTLPGKLADCSNK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE++R K+L + E+ +LITA Sbjct: 415 NPAECEIYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNNEVISLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTG+ + FD+ RYHKIIIMTDADVDGAHIRTLLLT FFR M LI G++YI +PP Sbjct: 475 IGTGV-SEDFDLENARYHKIIIMTDADVDGAHIRTLLLTLFFRYMRHLIDAGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GK Y ++ L D L G ++ L Sbjct: 534 LYKIKKGKMDYYAYSDKELADKLKELGEKGVAIQRYKGLGEMNPGQLWE 582 Score = 190 bits (483), Expect = 9e-46, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + I + + ++ V + Sbjct: 451 ILNVEKSRLAKILKNNEVISLITAIGTGVSEDFDLENARYHKIIIMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F I + + + + L D + +G KG+++QRYK Sbjct: 511 LTLFFRYMRHLIDAGYVYIAQPPLYKIKKGKMDYYAYSDKELADKLKELGEKGVAIQRYK 570 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799 GLGEMN QLWETT++P++R+LL+V + DA +AD++F LMGDEVEPRR FI+ ++ Sbjct: 571 GLGEMNPGQLWETTMDPESRTLLQVTLEDAIRADEIFRVLMGDEVEPRRNFIETHAKEVV 630 Query: 800 ALDI 803 LDI Sbjct: 631 DLDI 634 >gi|269791748|ref|YP_003316652.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 636 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 293/641 (45%), Positives = 408/641 (63%), Gaps = 8/641 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N S Y A IQ+L+GL AV+KRP MYIGD G+ GLHH++YEV+DNAIDE++ G+ D Sbjct: 2 NAPVSQYTAKDIQVLEGLSAVRKRPGMYIGD-QGQRGLHHLVYEVVDNAIDEAMAGFCDT 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + VT++ DGS +V DNGRGIPT++H G AAEV++T LHAG KF++K+Y+VSGGLHGV Sbjct: 61 VQVTVHPDGSVSVEDNGRGIPTEMHPTMGRPAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WL++ I R G + S+ G+ L + G + GT+V F+P +IFS Sbjct: 121 GVSVVNALSEWLEVTIWRNGKEHRQSYRRGVPVTDL-IAGEDTDRRGTKVHFMPDGEIFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+ DTL RLREL+FLN V I D R P E + ++GGI +FV YL+R K+ L Sbjct: 180 TLEFSADTLIGRLRELAFLNPGVTIVFRDLRQDPPMERKLHFEGGIRSFVEYLNRGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P+ ++G +D + +++A+++ND Y E + F N I +GGTH+SG R+ALTR I Sbjct: 240 FSPPMVVKGEKDGVIVEVALQYNDTYLERIFAFANLINTVEGGTHVSGFRTALTRLINDQ 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K K + GDD +EG T+V+S+K+ +P+F QTK KL + +V+ +V+S V +G Sbjct: 300 ARKEKLLKDKDPNFTGDDLKEGLTAVISVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEG 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L LE+ P + +V+K + A R+AA++ARDL RRK + LPGKLADCS R P+ Sbjct: 360 LKVILEDQPQILRPVVEKAVKARQAREAAKKARDLVRRKSAMSGMDLPGKLADCSNRRPE 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + EL++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+LS+ ++ T+I ALG Sbjct: 420 ECELYIVEGDSAGGSAKMGRDRSFQAILPLRGKILNVEKARLDKILSNDQVRTIIQALGC 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G D FD +KLRYHKI +M DADVDGAHIRTLLLT FFR MP +I NG LY+ +PPLY Sbjct: 480 GVG-DEFDYSKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYR 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + GK++ Y + L++ + S + G ++ L +D + Sbjct: 539 VQEGKNVHYCYSDRELKEIMQRLSGRKASVQRYKGLGEMNPEQLWET-----TMDPANRV 593 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + V ++ + + + N Sbjct: 594 IKRVEIEDAVLADELFSVLMGDAVEPRREFIEAHAKEVRNL 634 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 2/115 (1%) Query: 691 RIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 +I N L + G + L + + + + S+QRYKGLGEMN Q Sbjct: 522 QIIENGHLYVAQPPLYRVQEGKNVHYCYSDRELKEIMQRLSGRKASVQRYKGLGEMNPEQ 581 Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LWETT++P R + RV+I DA AD+LFS LMGD VEPRREFI+ ++ LD+ Sbjct: 582 LWETTMDPANRVIKRVEIEDAVLADELFSVLMGDAVEPRREFIEAHAKEVRNLDV 636 >gi|310657321|ref|YP_003935042.1| DNA gyrase subunit b [Clostridium sticklandii DSM 519] gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [Clostridium sticklandii] Length = 641 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 297/588 (50%), Positives = 401/588 (68%), Gaps = 4/588 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N N +Y A+ IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DNAIDE+L G+ D Sbjct: 5 ENKVNHAYGAEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEVVDNAIDEALAGHCD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V+++ D TV DNGRGIP ++H + G S E ++T LHAGGKF YKVSGGLHG Sbjct: 64 KIYVSIDPDNGITVKDNGRGIPVEIHPKTGKSTVETVLTVLHAGGKFGAGGYKVSGGLHG 123 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS L + +K G IY F G+ L + G + GT V F+P +F Sbjct: 124 VGVSVVNALSKELIVEVKINGKIYRQEFAYGVPQTELEIVGETT-ERGTCVRFMPDDAVF 182 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 + YDTL+HRLREL+FLN + I+L DKR + Y GG+ FV Y++++K P Sbjct: 183 EETQYKYDTLEHRLRELAFLNKGIHITLEDKREDLQKVKEFHYTGGLVEFVRYINKNKSP 242 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I + + + ++++AM++ D Y ENV F NNI +GG HL+G ++ALTR I Sbjct: 243 IHDDVIYFEKKQGDYTVEIAMQYTDAYVENVYSFANNINTHEGGMHLTGFKTALTRVIND 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +KS K + +++G+D REG T+V+SIK+PDP++ QTK KL + + RS VE+ D Sbjct: 303 YAKKSNFLKSKEDNLMGEDIREGLTAVVSIKLPDPQYEGQTKTKLGNPQARSAVETISGD 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 ++ +L+E+P A+IIV K L A R+AA++AR+LTRRK VL+ SLPGKLADC+E+DP Sbjct: 363 NITIFLDENPASARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDP 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 KSE++LVEGDSAGGSAKQGR R+ QAILPLRGKILNVE++R D++LSS EI +ITA G Sbjct: 423 VKSEIYLVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILSSDEIRNMITAFG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI + FD KLRYHKI+IMTDADVDGAHIRTL+LTFFFR M LI G++YI +PPL+ Sbjct: 483 CGI-SNEFDEEKLRYHKIVIMTDADVDGAHIRTLILTFFFRYMRPLIEKGYVYIAQPPLF 541 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 I +G+ +YV ++ L + L S ++ G ++ L + Sbjct: 542 RIKKGRREEYVYSDKELNERLEEIGRSNQVELQRYKGLGEMNAEQLWD 589 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + +V V + Sbjct: 457 ILNVEKSRLDRILSSDEIRNMITAFGCGISNEFDEEKLRYHKIVIMTDADVDGAHIRTLI 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRY 739 F F I + + + + + L + + IGR + +QRY Sbjct: 517 LTFFFRYMRPLIEKGYVYIAQPPLFRIKKGRREEYVYSDKELNERLEEIGRSNQVELQRY 576 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLW+TT+NP TR+LLRV I DAS ADD+FS LMGD+VEPRR FIQEN+ Sbjct: 577 KGLGEMNAEQLWDTTMNPATRTLLRVTIEDASMADDIFSMLMGDKVEPRRNFIQENAKYV 636 Query: 800 -ALDI 803 LD+ Sbjct: 637 KNLDV 641 >gi|115607076|gb|ABJ16352.1| gyrase B [Leptospirillum ferriphilum] Length = 731 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 298/737 (40%), Positives = 440/737 (59%), Gaps = 25/737 (3%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87 P MYIG T G GLHH++YE++DN++DE+L G+ I VT++ D S TV+DNGRGIPT + Sbjct: 1 PGMYIGST-GIDGLHHLVYELVDNSVDEALAGHCSEIHVTIHPDRSVTVADNGRGIPTGM 59 Query: 88 HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147 H E+ SAAEV++T LHAGGKFN YKVSGGLHGVGVSVVNALS L L I + G I+ Sbjct: 60 HAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVVNALSETLFLEIHQNGLIHR 119 Query: 148 MSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQ 207 ++ G D PL V G GT + F P I F++DTL HR REL+FLN + Sbjct: 120 QTYHKGAPDAPLAVFGETA-QRGTIIRFWPDMTIMETDQFSFDTLSHRFRELAFLNPVLT 178 Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 I L ++ + RE T ++GG+++FVS+L+ +KK L + D ++A ++ + Sbjct: 179 IHLKEEET--LREETFHFEGGVQSFVSFLNENKKTLHDVLFFRKTLEDGSQFEVAFQYQE 236 Query: 268 GY-HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 +E VL F NNI ++GGTH+ G R+A+T+ I ++ + +K ++ G+D REG Sbjct: 237 STENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQLNKGEEVR--GEDVREGL 294 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 T ++S+++P P+F QTK KL SS V +ESF+++ L EE PL AK I +K + + Sbjct: 295 TGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFEEDPLTAKKIAEKAVLTA 354 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R+AAR+A+DL +RK VL+ ++LPGKLADC E DP KSEL++VEGDSAGGSAKQGR R Sbjct: 355 QAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYIVEGDSAGGSAKQGRDRR 414 Query: 447 NQAILPLRGKILNVERAR-FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 QAILPL+GKILNVE++R +K +++ E+ LITA+G G+G++ F KLRYHKIIIMTD Sbjct: 415 FQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEEEFSEKKLRYHKIIIMTD 474 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 ADVDGAHIRTLLLTFFFR M LI F+YI +PPLY ++ G+ +Y+ ++E+L+ Y++ Sbjct: 475 ADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGRQERYLLNDEALQAYILE 534 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV---ISGVF 622 + ++ + + +++ + + + ++ ++ + + + Sbjct: 535 LACADWMFYDEQAGHWLAREEAVAKLLVLVHFEEQVRAHAQRFGNEMLLRLIGMFTETGI 594 Query: 623 NCESDQEINVSLASKLA---------NRLNFIAEKSEK--SWHGSINNSDILVKRIARGV 671 +E L S L RL+ E+ H I + G Sbjct: 595 EVLKSEEAARRLVSFLTGEYPGWVAGGRLDGQVERDPVMAETHPEEEWFRIRFFTESLGY 654 Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN---GDKIKITGPCSLLDTIFS 728 + + VL+ + + + + R ++ G++++ P LL + + Sbjct: 655 ESRLVLDHYLLAQLLAGKRSLRLLRQSGLLFPGGFVLRRGAEGEEVRFRSPRELLSFLET 714 Query: 729 IGRKGISMQRYKGLGEM 745 R+ +S+QRYKGLGEM Sbjct: 715 PVRQKLSIQRYKGLGEM 731 >gi|224994121|dbj|BAH28873.1| DNA gyrase subunit B [Psychrobacter piscatorii] Length = 743 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 332/744 (44%), Positives = 456/744 (61%), Gaps = 54/744 (7%) Query: 32 IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91 IGDTD +GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EE Sbjct: 1 IGDTDDGTGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEE 60 Query: 92 GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151 G+SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ Sbjct: 61 GVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYT 120 Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211 +G+ D + A + TGT++ F PSSD+F+ F YD L RLRELSFLNS V+I L Sbjct: 121 DGVPDADIQQ-MEATDQTGTQIRFYPSSDVFTGTVFEYDILAKRLRELSFLNSGVRIVLT 179 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 D+R + E +KGG+ FVSY++ K + + D IS+++A++W D Y+E Sbjct: 180 DERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWTDTYNE 237 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 VLCFTNNIPQKDGGTHLSG RSALTR + SY+++ KK+K + GDD REG T+++S Sbjct: 238 KVLCFTNNIPQKDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVAATGDDAREGLTAIVS 297 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 +K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K+++A+ RDA Sbjct: 298 VKVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPTAGKAIANKIMEAARARDA 357 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 AR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAIL Sbjct: 358 ARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAIL 417 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+ Sbjct: 418 PLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGS 477 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 478 HIRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNT 537 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQE 629 I+ L ++D + + ++ + + + D+ Sbjct: 538 KLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSVDMTYDES 597 Query: 630 INVSLASKLANRLNF-----------------------------------IAEKSEKSWH 654 + + +L+ I ++ + Sbjct: 598 AMQDWKAAMQTKLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMTPVIGTEAASTAE 657 Query: 655 GSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 G ++++ V + ++L+ S I S S+ + Sbjct: 658 GEASDNEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYGKLLRLSSEWNTLLESDA 717 Query: 706 SLICNG-----DKIKITGPCSLLD 724 + I + L Sbjct: 718 FIRREASAGTTKDIPVRDFDYLWQ 741 >gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208] Length = 638 Score = 638 bits (1646), Expect = e-180, Method: Composition-based stats. Identities = 291/588 (49%), Positives = 410/588 (69%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + + D S TV DNGRGIP + ++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 61 INIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L + + R+G I+ ++ G+ L V G + TGT F+P +IF Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++YD L +R+REL+FL V I++ DKR + R+ Y+GGI+++V YL+R K+ Sbjct: 180 ETTVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI I+G +D I++++A+++ND Y N+ FTNNI +GGTH +G ++ LTR I Sbjct: 240 IHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K++ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ + Sbjct: 300 YARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSS 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L E+P A+ IV+K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +DP Sbjct: 360 ALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++Y +++ L++ L S + G ++ L Sbjct: 539 KVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 586 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722 V + F + + I + + L + G +++ L Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 558 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L + + G+ QRYKGLGEMNA+QLWETT++P TR+LL+V + DA AD+ F LMG Sbjct: 559 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 616 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+ LDI Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638 >gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42] gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42] Length = 638 Score = 638 bits (1646), Expect = e-180, Method: Composition-based stats. Identities = 291/588 (49%), Positives = 410/588 (69%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCTD 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + + D S TV DNGRGIP + ++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 61 INIEIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L + + R+G I+ ++ G+ L V G + TGT F+P +IF Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPVADLEVIGDT-DKTGTITHFVPDPEIFK 179 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++YD L +R+REL+FL V I++ DKR + R+ Y+GGI+++V YL+R K+ Sbjct: 180 ETIVYDYDLLSNRVRELAFLTKGVNITIEDKREGQERKNEYHYEGGIKSYVEYLNRSKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI I+G +D I++++A+++ND Y N+ FTNNI +GGTH +G ++ LTR I Sbjct: 240 VHEEPIYIEGEKDGITVEVALQYNDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K++ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ + Sbjct: 300 YARRKGIFKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSS 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L E+P A+ IV+K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +DP Sbjct: 360 ALETFLLENPDSARKIVEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++Y +++ L++ L S + G ++ L Sbjct: 539 KVQQGKRVEYAYNDKQLDELLKELPQSPKPGLQRYKGLGEMNATQLWE 586 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722 V + F + + I + + L + G +++ L Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 558 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L + + G+ QRYKGLGEMNA+QLWETT++P TR+LL+V + DA AD+ F LMG Sbjct: 559 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 616 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+ LDI Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638 >gi|72388563|gb|AAZ67925.1| DNA gyrase subunit B [Psychrobacter proteolyticus] Length = 743 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 331/744 (44%), Positives = 454/744 (61%), Gaps = 49/744 (6%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIGDTD +GLHHM++EV+DN++DE+L G+ D I + ++ D S +V DNGRG+P D Sbjct: 1 RPGMYIGDTDDGTGLHHMVFEVVDNSLDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVD 60 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 +H EEG+SAA+VIMT LH GGKF+ YKVSGGLHGVGVSVVNALS L++ I REG Y Sbjct: 61 IHPEEGVSAAQVIMTVLHVGGKFDDNRYKVSGGLHGVGVSVVNALSQKLEMNIWREGYHY 120 Query: 147 EMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSV 206 ++ +G+ D+ + A + TGT++ F PSSD+F+ F YD L RLRELSFLNS V Sbjct: 121 HQTYTDGVPDSDIQQ-MEATDQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGV 179 Query: 207 QISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 +I L D+R + E +KGG+ FVSY++ K + + D IS+++A++W Sbjct: 180 RIVLTDERIDKRHE--FEHKGGLLEFVSYINAGKDGINEVFHFTSQQDDGISVEVALQWT 237 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 D Y+E VLCFTNNIPQKDGGTHLSG SALTR + SY+++ KK+K + GDD REG Sbjct: 238 DTYNEKVLCFTNNIPQKDGGTHLSGXXSALTRCLNSYMDRENLFKKEKVAATGDDAREGL 297 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 T+++S+K FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K++DA+ Sbjct: 298 TAIVSVKYQIQNFSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPGAGKAIANKIIDAA 357 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 RDAAR+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ Sbjct: 358 RARDAARKAREMTRRKTTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRK 417 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPL+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDA Sbjct: 418 TQAILPLKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDA 477 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG+HIRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ Sbjct: 478 DVDGSHIRTLLLTFFFRQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSS 537 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 ++ I+ L ++D + + ++ + + + Sbjct: 538 TIDNTKLHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDM 597 Query: 627 --DQEINVSLASKLANRLNF----IAEKSEK--------------------------SWH 654 D+ + + +L+ ++ + E + Sbjct: 598 TYDESAMQDWKAAMQTKLDHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMTPVVGTEE 657 Query: 655 GSINNSD---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 G ++S+ V + ++L+ S I S S+ + Sbjct: 658 GEASDSEALSTKAQWLPRVTVYVHQLAHHYLLDASFINSGEYGKLLRLSSEWNTLLESDA 717 Query: 706 SLICNG-----DKIKITGPCSLLD 724 + I + L Sbjct: 718 FIRREASAGTTKDIPVRDFDYLWQ 741 >gi|81251070|gb|ABB69874.1| DNA gyrase subunit B [Nitrosospira sp. GS832] Length = 555 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 334/548 (60%), Positives = 422/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N +++Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D Sbjct: 11 KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + H +E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R G ++++ F G+ PLVVTG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + + GG+ +FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+EK+ +KK K GDD REG + V S+K+ +P+FSSQTKEKLVSSEVR VE V Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVSSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E PL+AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|81251074|gb|ABB69877.1| DNA gyrase subunit B [Nitrosospira sp. NRS527] Length = 555 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 335/548 (61%), Positives = 423/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N +++Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D Sbjct: 11 KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + H +E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R G ++++ F G+ PLVVTG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + + GG+ +FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+EK+ +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VE V Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E PL+AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|81251078|gb|ABB69880.1| DNA gyrase subunit B [Nitrosospira sp. TYM9] Length = 555 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 335/548 (61%), Positives = 423/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N +++Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D Sbjct: 11 KNESSTAYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + H +E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSLTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R G ++++ F G+ PLVVTG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLTIRRNGQVHQIEFRMGVPVGPLVVTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + + GG+ +FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--EIFAFVGGVRSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +DNI ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYASGEKDNIMVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+EK+ +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VE V Sbjct: 308 NSYIEKNEVAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L E PL+AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SQKLAEFLLEQPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVERARFDK++SSQEI +LITA Sbjct: 428 NPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 633 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 300/589 (50%), Positives = 408/589 (69%), Gaps = 8/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +Y A IQIL+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 1 MAN---EETYGASQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V D+GRGIPTD+H + G S EV +T LHAGGKFN YKVSGGL Sbjct: 57 CKNIDVVIHKDNSVSVIDDGRGIPTDIHPQTGKSGVEVALTVLHAGGKFNNDVYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L++ +K+ G +YE + G+ + L + G ++TGT +TF P + Sbjct: 117 HGVGLSVVNALSKRLEVIVKQNGKVYEQKYERGVPKSDLKIIGDT-DETGTTITFAPDDE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD L RLRELSFLN V+I L+D+R + Y+GGI FV YL+R+K Sbjct: 176 IFETLEYDYDILSQRLRELSFLNKGVRIRLMDERDGKE--DVFHYEGGIVEFVKYLNRNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L PI ++ D +++AM++ND Y EN+ F NNI ++GGTHL G ++ALT+ I Sbjct: 234 EVLHPEPIYMESKSDTYEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKAALTKVI 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K + +++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+V+S V Sbjct: 294 NDYARKFNIIKDNDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVV 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+A++EE+P +K+I++K A+ R+AAR+AR+LTRRK L+ SLPGKLADCSE+ Sbjct: 354 TEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K EL+LVEGDSAGGSAK GR QAILPLRGKILNVE+AR D++LSS EI +ITA Sbjct: 414 DASKCELYLVEGDSAGGSAKMGRDSRYQAILPLRGKILNVEKARLDRILSSDEIKAMITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PP Sbjct: 474 LGTGIGSD-FDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I + K + Y ++ L++ L G + L + Sbjct: 533 LYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYKGLGEMDAEQLWD 581 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDRILSSDEIKAMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + N L + + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEM+A QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 570 GLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9] gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9] Length = 636 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 294/566 (51%), Positives = 401/566 (70%), Gaps = 8/566 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L G+ Sbjct: 1 MS--LNQNTYDESQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEVVDNSIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIP + + S EV+MT LHAGGKF + YKVSGGL Sbjct: 58 CTHIDVIVHEDNSITVVDNGRGIPVGENTKLKKSTVEVVMTVLHAGGKFGGEGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + + +KR+G++Y+ + G + V G + +TGT V F P + Sbjct: 118 HGVGVSVVNALSEHVTVTVKRDGHVYQQEYRRGAPQYDIKVIGDSE-ETGTIVQFKPDPE 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ + Y+ LQ R+REL+FLN + ISL D+R+ + GGI FV YL+R+ Sbjct: 177 IFTETTVYEYEILQSRIRELAFLNKGISISLTDERTGQSNIYKY--DGGIIEFVKYLNRN 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L ++PI ++G +D+I +++A+++ND Y +N+ F NNI +GGTH SG +SALTR Sbjct: 235 REALHETPIYVEGEKDHIQVEVALQYNDSYSDNIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y ++ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VESF Sbjct: 295 INDYARRTNSIKDNDSNLSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESF 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L+E+P +K IV+K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 355 FAEKLQEFLDENPSVSKRIVEKGLQASRAREAARKARELTRRKSALEVSSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++L + EI +IT Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M +I GF+YI +P Sbjct: 475 ALGTGIG-DDFDIAKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLIN 565 PL+ + R K ++Y + E+ + + Sbjct: 534 PLFKVERNKVVRYAQSEKERDQIIAE 559 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILGNAEIRAIITALGTGIGDDFDIAKARYHKIIIM 497 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + K I + I + + N I Sbjct: 498 TDADVDGAHIRTLLLTFFYRYMRKIIDAGFIYIAQPPLFKVERNKVVRYAQSEKERDQII 557 Query: 727 FSIGRKGI--SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 G G+ ++QRYKGLGEMNA+QLWETT++P++R++L+V I DA +AD +F LMGD Sbjct: 558 AEFGE-GVKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVTIEDAMEADVVFDTLMGDN 616 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR+FI + + LD Sbjct: 617 VEPRRDFIHQYAKYVKNLD 635 >gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia ATCC 43541] gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia ATCC 43541] Length = 685 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 303/591 (51%), Positives = 413/591 (69%), Gaps = 6/591 (1%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M D + ++ Y A IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L Sbjct: 47 MGDEVTAVDADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALA 105 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D + V ++ D S TV+DNGRGIP D+H E G+ A EV++T LHAGGKF YKVSG Sbjct: 106 GYCDNVEVVIHKDNSITVTDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSG 164 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALSS +++ ++R+G IYE+SF G+ N L G TGT V F+P Sbjct: 165 GLHGVGVSVVNALSSSMEVEVRRDGKIYEISFTRGVTVNKLHEIG-ISETTGTRVHFVPD 223 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+V ++++TL+HRLREL+FLN + I+L+D+R E R T ++GGI +FVS+L+R Sbjct: 224 PEIFTVTTYSFETLKHRLRELAFLNHGITITLVDERGEEERRETFHFEGGIRSFVSHLNR 283 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ + + PI G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR Sbjct: 284 KKETINEEPIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTR 343 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + K ++ G+D REG T V+S+K+ +P+F QTK KL +SEVR +V+S Sbjct: 344 AANDFARRLSVLKDKDGNLSGEDVREGLTCVISLKVREPQFEGQTKTKLGNSEVRGIVDS 403 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V +GL+ + EE+P K +++K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 404 IVTEGLTEYFEENPAITKKVLEKGLMASRAREAARKARELTRRKNALEVSSLPGKLADCS 463 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+I Sbjct: 464 VKDPDQCEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMI 523 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ +G +YI + Sbjct: 524 TAFGTGIGEE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDHGHVYIAQ 582 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I + K Y +E L G ++ L Sbjct: 583 PPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 633 Score = 183 bits (465), Expect = 1e-43, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + S ++ V + + Sbjct: 502 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 559 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738 + +F +Y + + DK + IGR G+++QR Sbjct: 560 LLLTFFYRYMKPLVDHGHVYIAQPPLYQIRKDKKHFYTYSDEEQAKKLDEIGRDGVTIQR 619 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT+NP+ R++L+V DA AD+LF+ LMGD+VEPRR+FI+EN+ L Sbjct: 620 YKGLGEMNPEQLWETTMNPEGRTMLQVGAEDAEAADELFTILMGDKVEPRRQFIEENARL 679 Query: 798 PSALDI 803 LDI Sbjct: 680 VRNLDI 685 >gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT] gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT] Length = 628 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 312/644 (48%), Positives = 425/644 (65%), Gaps = 18/644 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + YDA I++++GL+AV+ RPSMYIG TD GLHH++YEV+DN++DE++ GY Sbjct: 1 MSETM----YDASHIKVMEGLEAVRHRPSMYIGSTD-VHGLHHLVYEVVDNSVDEAMAGY 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ DGS +V D+GRGIP D+H + A E++MT LHAGGKF+ +Y VSGGL Sbjct: 56 CKEISVVIHGDGSVSVKDDGRGIPVDIHPQYNRPAVEIVMTVLHAGGKFDHDTYHVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ + REG +Y + G + L TG +TGT V F P + Sbjct: 116 HGVGVSVVNALSEWLEVEVSREGRVYRQRYERGRPVSDLQETG-VSENTGTTVRFKPDPE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF V DF++D L RLREL+FLN ++IS+ D+RS R T Y GGI +FV YL++ K Sbjct: 175 IFEVTDFSFDVLSSRLRELAFLNRGLKISITDERSG--RSKTFHYDGGIISFVQYLNKSK 232 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L +PI RD++S+++AM++N Y+E+V F NNI ++GGTHLSG R+ALT+ + Sbjct: 233 EVLHPNPIYFSRVRDDVSVEVAMQYNTSYNESVFTFANNINTREGGTHLSGFRAALTKTV 292 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +V K + GDD REG +V+S+++PDP+F QTK +L +S VR +VES V Sbjct: 293 NDFVR-EKKLLKGDAKLTGDDLREGLVAVVSVRLPDPQFEGQTKTRLGNSAVRGLVESLV 351 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++GL + E +P A+ IV+K +A R+AAR+A+++TRRK L + LPGKLADC ER Sbjct: 352 SEGLMEYFELNPQVAEAIVEKATEAMRAREAARKAKEITRRKTALTSSGLPGKLADCVER 411 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP KSEL++VEG+SAGGSAKQGR+R QA+LPLRGKILNVERAR DKML ++EI LITA Sbjct: 412 DPAKSELYIVEGESAGGSAKQGRNRHFQAVLPLRGKILNVERARLDKMLKNEEIRNLITA 471 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D FDI K RYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G++YI +PP Sbjct: 472 LGTGIG-DDFDITKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVYIAQPP 530 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GKS++Y +E L L + + + G ++ L ++ Sbjct: 531 LYQVRKGKSVKYAYSDEELAKLLED---GKAVVQRYKGLGEMNPEQLWET-----TMNPE 582 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + K +E I V E + V + + N Sbjct: 583 KRTLLRVTLKDAVEADEIFSVLMGEQVEPRRVFIETHAREVRNL 626 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 15/201 (7%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + E + + +L + + + + + K + Sbjct: 442 LPLRGKILNVERARLDKMLKNEEIRNLITALGTGIGDDFDITKARYHK-----------I 490 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + I + + L + G +K L Sbjct: 491 IIMTDADVDGSHIRTLLLTFFYRYMQPLIEAGYVY-IAQPPLYQVRKGKSVKYAYSDEEL 549 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + G+ +QRYKGLGEMN QLWETT+NP+ R+LLRV + DA +AD++FS LMG+ Sbjct: 550 AKLLEDGK--AVVQRYKGLGEMNPEQLWETTMNPEKRTLLRVTLKDAVEADEIFSVLMGE 607 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR FI+ ++ LD+ Sbjct: 608 QVEPRRVFIETHAREVRNLDV 628 >gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis] Length = 641 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 297/594 (50%), Positives = 407/594 (68%), Gaps = 10/594 (1%) Query: 1 MSDNIQ-----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D S+YDA IQ+L+GL+AV++RP MYIG T GLHH++YE++DN+IDE Sbjct: 1 MADQETWTVNGESTYDASQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L GY D I V ++ D S VSDNGRGIP D+H + G A EV +T LHAGGKF + YK Sbjct: 60 ALAGYCDTIEVIIHEDNSIEVSDNGRGIPVDIHPKMGKPAVEVALTVLHAGGKFGGEGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG+SVVNALS LK+ ++R G ++E + G+ L V G+A TGT + F Sbjct: 120 VSGGLHGVGLSVVNALSEKLKVTVRRNGKVHEQYYERGVTMTDLKVVGNAE-STGTTIYF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P IF +++Y+TL HRLRELSFLN V+I+L D R+ + ++GGI FV + Sbjct: 179 KPDGLIFEELEYSYETLSHRLRELSFLNRGVKITLKDLRTGQES--IFAHEGGIIDFVKF 236 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+R+K + I Q ++ + +++A+++NDGY E + + NNI ++GGTH SG ++A Sbjct: 237 LNRNKDLIHPHVIYFQNEKEGVHVEMALQYNDGYSETLFSYANNINTQEGGTHESGFKTA 296 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y + K++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR + Sbjct: 297 LTRVINDYGRRINQIKENDSNLSGEDIREGITAVISVKVREPQFEGQTKTKLGNSEVRGI 356 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +S V +GLS +LEE+P K +++K L A R+AAR+AR+LTRRK L+ SLPGKLA Sbjct: 357 TDSCVTEGLSTYLEENPSVGKKVIEKALSAMRAREAARKARELTRRKSALESTSLPGKLA 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +DP EL++VEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+LS++EI Sbjct: 417 DCSFKDPSMCELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILSNEEIR 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LITALGTGIG+D FD++K RYH++ +MTDADVDG+HIRTLLLTFFFR M LI NG++Y Sbjct: 477 ALITALGTGIGED-FDLSKARYHRVCLMTDADVDGSHIRTLLLTFFFRHMKPLIENGYVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I +PPLY + +G+ ++Y + L YL G ++ L + Sbjct: 536 IAQPPLYQVKKGRDVRYYYHDNELNQYLDKNGRDGVTIQRYKGLGEMNPEQLWD 589 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 6/119 (5%) Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRYKGLGEM 745 R IE Y L + G ++ L + GR G+++QRYKGLGEM Sbjct: 523 RHMKPLIENGYVYIAQPPLYQVKKGRDVRYYYHDNELNQYLDKNGRDGVTIQRYKGLGEM 582 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 N QLW+TT++P+ R++L+V + DA++A+ +F+ LMGD VEPRREFIQ ++ LDI Sbjct: 583 NPEQLWDTTMDPEHRTILQVSMEDAAEAESIFTTLMGDRVEPRREFIQSHAKDVRNLDI 641 >gi|167043616|gb|ABZ08310.1| putative DNA gyrase B [uncultured marine microorganism HF4000_APKG2M17] Length = 655 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 294/596 (49%), Positives = 397/596 (66%), Gaps = 8/596 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N ++ Y A +IQ+L+GL+AV+KRP+MYIGD G GLHH++ EV+DN+IDE+L G+ Sbjct: 10 MAENEASNQYGASNIQVLEGLEAVRKRPAMYIGDI-GPRGLHHLVNEVVDNSIDEALAGH 68 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ DGS ++ DNGRGIP D+H E SA EV+MT LHAGGKF++ +YKVSGGL Sbjct: 69 CDAIDVIIHEDGSISIKDNGRGIPVDMHPIEKRSALEVVMTTLHAGGKFDKDTYKVSGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178 HGVGVS VNALS L+ I R+G +++ +F G + G TGT V F P Sbjct: 129 HGVGVSCVNALSEKLEASIWRDGALWKQTFEYGDPVGAVAKVRDMKDGESTGTLVRFWPD 188 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF +F +D L RLRE+++LN V IS+ D R E ++GGI FV YLD Sbjct: 189 GGIFQTTEFRFDRLADRLREMAYLNRHVYISIEDLREAEGLRDEYHFEGGIIEFVEYLDE 248 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + P+ I I + +++AMR+N GY ENVL F NNI +GGTH+SG R ALTR Sbjct: 249 ARTPIHDETIYIADEDAEVPVEMAMRYNSGYTENVLSFVNNINTHEGGTHVSGFRRALTR 308 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY +K+ K K + GDD REG T +LSIK+ +P+F QTK KL +SEV+ VES Sbjct: 309 TLKSYADKNNLLKNVKVDLSGDDFREGITVILSIKVAEPQFEGQTKTKLGNSEVQGAVES 368 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V L WL++HP E+K IV+KV+ A+ R AAR+AR+L +RK LPGKLADCS Sbjct: 369 LVFLKLGEWLDDHPKESKRIVEKVIIAAEARAAARKARELVQRKNAFSSGGLPGKLADCS 428 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ ++ E++LVEGDSAGGSAKQ R R QAILPLRGKILNVE+AR D++L+++EI ++ Sbjct: 429 SKNAEECEIYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILANEEIRNIV 488 Query: 479 TALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 TALGTG+ G+D FD KLRYHKII+MTDADVDGAHIRTLLLTF +R M +L+ G++YI Sbjct: 489 TALGTGLGAGEDDFDPEKLRYHKIIVMTDADVDGAHIRTLLLTFLYRHMHALVEAGYIYI 548 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRN 589 +PPLY +GK +Y ++ L++ + + G ++ + L + Sbjct: 549 AQPPLYKAKKGKQEEYCWTDKQLKEVIERIGGDSPEKVTIQRYKGLGEMNPDQLWD 604 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 15/211 (7%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A + + E + I +L + L E + Sbjct: 455 RHFQAILPLRGKILNVEKARLDRILANEEIRNIVTALGTGLGA--------GEDDFDPEK 506 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 ++ V + + + +F ++ K + Sbjct: 507 LRYHKIIVMTDADVDGAHI--RTLLLTFLYRHMHALVEAGYIYIAQPPLYKAKKGKQEEY 564 Query: 718 G-----PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 +++ I + +++QRYKGLGEMN QLW+TT+NP+TR L R+ I DA+ Sbjct: 565 CWTDKQLKEVIERIGGDSPEKVTIQRYKGLGEMNPDQLWDTTMNPETRLLQRITIDDAAA 624 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 AD +FS LMGD VEPRR+FI+ N+ + +D+ Sbjct: 625 ADRIFSTLMGDAVEPRRKFIERNAKYATIDV 655 >gi|81251090|gb|ABB69889.1| DNA gyrase subunit B [Nitrosovibrio sp. FJI82] Length = 559 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 330/548 (60%), Positives = 418/548 (76%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L GY D Sbjct: 15 NPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCD 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITVT++ D S +V DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 75 EITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 134 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R G +++ F G PL + G GTEV FL S Sbjct: 135 HGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKTE-RRGTEVHFLASKQ 193 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 194 IFGDIEYHYDIFARRLRELSFLNNGVKIHLVDQRTGKE--ETFAFAGGVKSFVEYINRAK 251 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + +G ++ I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 252 TVLHPNIFYARGEKEGIVVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 311 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+EK+ SKK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VE V Sbjct: 312 NSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 371 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 LS +L+E PL+AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 372 TQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLGLPGKLADCQEK 431 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 432 DPALCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIISLITA 491 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 492 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 551 Query: 541 LYGITRGK 548 LY + GK Sbjct: 552 LYKVKHGK 559 >gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885] gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885] Length = 635 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 298/584 (51%), Positives = 398/584 (68%), Gaps = 5/584 (0%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YD IQ+L+GL+AV++RP MYIG T G GLHH+I+EV+DNA+DE+L G ITVTL+ Sbjct: 6 YDESQIQVLEGLEAVRRRPGMYIGST-GPRGLHHLIWEVVDNAVDEALAGRCTAITVTLH 64 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGSC+V DNG GIP +H + G EV++T LHAGGKF+ ++YKVSGGLHGVGVSVVN Sbjct: 65 ADGSCSVRDNGGGIPVGIHPKVGKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVGVSVVN 124 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDFN 188 ALS WL++ ++REG I+ + G D L V G+ DTGT V F P +IF +F Sbjct: 125 ALSEWLEVEVRREGRIHRQRYRRGKPDTDLEVVGTTDPADTGTYVRFKPDPEIFEETEFK 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 YD + RLRE++ LNS + I L D+R+ E + GG+ +FV+ L+R K+PL PI Sbjct: 185 YDVVVGRLREIALLNSGLYIELKDERTGERN--LFQFMGGLRSFVALLNRTKEPLHPEPI 242 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 +G RD + +++A++W Y E + F N I +GGTH +G + ALTR + Y K+ Sbjct: 243 SYKGERDGVEVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDYARKAN 302 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K + ++ GDD REG T+VLS+K+P+P+F QTK KL +SEVR VV+S + L+ + Sbjct: 303 LIKNGEENLSGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEALATYF 362 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE+P A+ +V+K + A R+AAR+AR+LTRRK L++ +LPGKL DC+ RDP +ELF Sbjct: 363 EENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPAMAELF 422 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAKQGR R QA+LPLRGKILNVE+AR DK+L+ EI LITA+GTGIG+D Sbjct: 423 IVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGTGIGED 482 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI K RYHKII+MTDADVDGAHIRTLLLTFFFR M LI G++YI +PPLY + GK Sbjct: 483 -FDIQKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPPLYLVRMGK 541 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y D++ LE + + F + ++ ++ Sbjct: 542 EEHYFYDDDQLEAFFRQIGKRMPAQRFKGLGEMNAEQLWETTMN 585 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 2/183 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + + ++ V + Sbjct: 451 ILNVEKARLDKILAHDEIRALITAIGTGIGEDFDIQKARYHKIILMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + ++ L IG++ + QR+K Sbjct: 511 LTFFFRYMKPLIEAGYVYIAQPPLYLVRMGKEEHYFYDDDQLEAFFRQIGKR-MPAQRFK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 GLGEMNA QLWETT+NP+TR+LL+V + DA AD +FS LMG VEPRREFI++++ Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQIFSILMGSRVEPRREFIEQHARKVR 629 Query: 801 -LD 802 LD Sbjct: 630 FLD 632 >gi|225181142|ref|ZP_03734588.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1] gi|225168111|gb|EEG76916.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1] Length = 650 Score = 635 bits (1637), Expect = e-179, Method: Composition-based stats. Identities = 296/601 (49%), Positives = 418/601 (69%), Gaps = 15/601 (2%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ N+ YD IQ+L+GL+AV++RP MYIG T G GLHH+++EV+DN+IDE Sbjct: 1 MAEEKNNNPLNNGHYDESHIQVLEGLEAVRRRPGMYIGST-GARGLHHLVFEVVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ D I +T+ D TVSD+GRGIP + + G A EV++T LHAGGKF + YK Sbjct: 60 ALAGHCDDIVITIEKDNIITVSDDGRGIPVGIQPQTGRPAVEVVLTVLHAGGKFGGEGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVGVSVVNALS WL++ + R+G I++MSF G + L VTG TGT++ F Sbjct: 120 VSGGLHGVGVSVVNALSEWLEVEVHRDGKIHQMSFARGAIVKELTVTGKTK-KTGTQIRF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGI 229 P +++F +F+Y+TL RLREL+FLN ++I++ D+R+ E + T Y GGI Sbjct: 179 KPDAEVFETVEFSYETLSKRLRELAFLNKGIRITVADERTELTDETNEKVKETFKYDGGI 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 ++FV +L+++K+PL + I ++ + D +++A++++DGY++ +L F NNI +GGTH Sbjct: 239 KSFVEFLNKNKEPLHKKAIYLEQEKEDCCQVEIALQYHDGYNDLILSFANNIHTHEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 +G +SALTR I Y K+ K+++ +V G+D REG T+V+S+K+ +P+F QTK KL Sbjct: 299 EAGFKSALTRLINDYARKNNLLKENESNVSGEDIREGLTAVISVKLLEPQFEGQTKTKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 +SE+R +V+SF+ + L A+L E+P AK +V+K + A+ R+AAR+AR+L RRK L++ Sbjct: 359 NSEMRGIVDSFLYEELGAYLGENPQMAKRLVEKSVSAARAREAARKARELARRKSALEVT 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADC+ RDP EL+LVEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+ Sbjct: 419 SLPGKLADCASRDPAMCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKIINVEKARLDKI 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 L+++EI T+ITALGTGI FD+ K RYHKIIIMTDADVDG+HIRTLLLTFF+R M L Sbjct: 479 LANEEIRTIITALGTGI-STDFDLAKARYHKIIIMTDADVDGSHIRTLLLTFFYRYMQPL 537 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 I G++YI +PPLY + + + YV E+ L+ L G ++ L Sbjct: 538 IQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGNSLQRYKGLGEMNPEQLW 597 Query: 589 N 589 + Sbjct: 598 S 598 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + ++ V + Sbjct: 467 IINVEKARLDKILANEEIRTIITALGTGISTDFDLAKARYHKIIIMTDADVDGSHIRTLL 526 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + + + L + IGR+G S+QRYK Sbjct: 527 LTFFYRYMQPLIQAGYVYIAQPPLYLVKKKQKEHYVYTEDQLDRLLKEIGREGNSLQRYK 586 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLW TT++P+ R++L+V + DA +ADD+F+ LMGD+VEPRR FI+ ++ Sbjct: 587 GLGEMNPEQLWSTTMDPEKRTILQVTMEDAIRADDMFTVLMGDKVEPRRVFIESHANQVR 646 Query: 800 ALDI 803 LDI Sbjct: 647 NLDI 650 >gi|320531090|ref|ZP_08032119.1| DNA gyrase, B subunit [Selenomonas artemidis F0399] gi|320136672|gb|EFW28625.1| DNA gyrase, B subunit [Selenomonas artemidis F0399] Length = 684 Score = 634 bits (1636), Expect = e-179, Method: Composition-based stats. Identities = 300/583 (51%), Positives = 408/583 (69%), Gaps = 4/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y A IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L GY D + V Sbjct: 54 DADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDTVAV 112 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S TV DNGRGIP D+H E G+ A EV++T LHAGGKF YKVSGGLHGVGVS Sbjct: 113 TIHRDNSITVVDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 171 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSS + ++++R+G+IYE++F G L G TGT V F+P +IF+V Sbjct: 172 VVNALSSSMDVQVRRDGHIYEIAFARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT 230 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++++TL+HRLREL+FLN + I+L D+R E R T + GGI +FVS+L+R K+ + + Sbjct: 231 YSFETLKHRLRELAFLNHGITITLTDERGEELRSETFHFDGGIRSFVSHLNRKKETINEE 290 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR + + Sbjct: 291 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARR 350 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR +V+S V +GL+ Sbjct: 351 LNVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTE 410 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P K ++ K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS +DP + E Sbjct: 411 YFEENPNVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCE 470 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGIG Sbjct: 471 IYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIG 530 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ +G +YI +PPLY I + Sbjct: 531 EE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRK 589 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K Y +E L G ++ L Sbjct: 590 DKKHFYTYTDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 632 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + S ++ V + + Sbjct: 501 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 558 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738 + +F +Y R + DK + IGR G+++QR Sbjct: 559 LLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKKLDEIGRDGVTIQR 618 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT+NP R++LRV DA AD+LF+ LMGD+VEPRR+FI+EN+ L Sbjct: 619 YKGLGEMNPEQLWETTMNPSERTMLRVAAEDAEAADELFTILMGDKVEPRRQFIEENARL 678 Query: 798 PSALDI 803 LDI Sbjct: 679 VRNLDI 684 >gi|220932011|ref|YP_002508919.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] Length = 637 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 301/613 (49%), Positives = 411/613 (67%), Gaps = 8/613 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y A+ I+ILKGL+AV+KRP MYIG T G GLHH+++EV+DN+IDE L GY D I VT+N Sbjct: 9 YGAEQIEILKGLEAVRKRPGMYIGST-GIRGLHHLVWEVVDNSIDEYLAGYGDKIEVTIN 67 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S TV D GRGIP + H E G+ AA+V+MT LHAGGKFN SYKVSGGLHGVG+SVVN Sbjct: 68 EDNSITVEDWGRGIPAEEHPETGLPAAQVVMTTLHAGGKFNNNSYKVSGGLHGVGISVVN 127 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS WL+L GN Y + G G N GT ++F P +IF V +F Y Sbjct: 128 ALSEWLELTTYWNGNEYYQRYERGYPKTKFQKLG-TSNRNGTIISFKPDPEIFDVTEFKY 186 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 +TL HRL+E +FLN + + LIDKRS + ++ Y GGI+AFV YL+++++ + + I Sbjct: 187 ETLAHRLQESAFLNKELSLILIDKRSDKTKKEVFQYDGGIKAFVEYLNKNRQVINEDIIY 246 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 + + I++A+++N+GY+E + + NNI DGG HL+G ++ALT+ I ++ +++ Sbjct: 247 TEKENGDYYIEVALQYNEGYNERIFSYANNINTVDGGYHLTGFKTALTKAINNFAKQNNL 306 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 K+ ++ G+D REG T+V+++K+P+P+F QTK KL +SE+RS+VES + D LS +L+ Sbjct: 307 LKQSDPTLTGNDVREGLTAVVNVKLPNPQFEGQTKSKLGNSEIRSIVESNIYDYLSLYLD 366 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429 +P K IV K + A R A+++AR+LTRRK L+ SLPGKLADC+ R P+KSELFL Sbjct: 367 SNPEVGKKIVDKAIQAIRARQASKKARELTRRKNALNSHSLPGKLADCASRKPEKSELFL 426 Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489 VEGDSAGGSAKQGR+R QAILPL+GKI+NVERAR DK+LS+ EI T+I+ALGTGIGQ+ Sbjct: 427 VEGDSAGGSAKQGRNRHFQAILPLKGKIMNVERARLDKILSNNEIATIISALGTGIGQE- 485 Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 F+I+KLRYHKIIIMTDADVDGAHI TLLLT F+R MP LI G++YI +PPLY ++ K+ Sbjct: 486 FNIDKLRYHKIIIMTDADVDGAHIATLLLTLFYRYMPELIKEGYIYIAQPPLYKVSWKKN 545 Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 ++Y+ ++ LE G ++ L ++ + Sbjct: 546 IRYLYTDKELESLKRELENKSYSIQRYKGLGEMNPRQLWET-----TMNPETRKLLRIEI 600 Query: 610 KTFIEQAVISGVF 622 IE I Sbjct: 601 DDEIEADEIFTRL 613 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 1/73 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K S+QRYKGLGEMN QLWETT+NP+TR LLR++I D +AD++F+RLMG RREF Sbjct: 565 KSYSIQRYKGLGEMNPRQLWETTMNPETRKLLRIEIDDEIEADEIFTRLMGSNASLRREF 624 Query: 792 IQENSLPS-ALDI 803 I N+ LDI Sbjct: 625 IISNADMVDELDI 637 >gi|220930856|ref|YP_002507764.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168] Length = 642 Score = 634 bits (1635), Expect = e-179, Method: Composition-based stats. Identities = 294/593 (49%), Positives = 406/593 (68%), Gaps = 7/593 (1%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +Y+A+ IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE++ Sbjct: 1 MAEESFLNNKGNYEAEHIQVLEGLEAVRKRPGMYIGST-GMDGLHHLVYEVVDNSIDEAM 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 +GY D+I V + TV DNGRGIP D H + A EV++T LHAGGKF YKVS Sbjct: 60 QGYCDLIEVIIKPGNIITVKDNGRGIPVDPHPKLKKPAVEVVLTVLHAGGKFGGDGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 GGLHGVGVSVVNALS WL++ + R+G +Y + GI L V G TGT ++F Sbjct: 120 GGLHGVGVSVVNALSKWLEVEVCWRDGKVYHQKYNRGIPVYDLKVIGECS-GTGTTISFK 178 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P +IF +F Y L RL+EL+FLN V+I L D+R E R+ ++GG+ +FV YL Sbjct: 179 PDEEIFEDVNFKYKVLAQRLKELAFLNKGVRIILRDEREEEARQDEYCFEGGLVSFVKYL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +++K PL P ++ +N +++A+++NDGY +++ F NNI ++GGTHLSG +SAL Sbjct: 239 NKNKNPLFDEPFYLEEKDENREVEIAIQYNDGYVDSIFTFANNINTREGGTHLSGFKSAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y K++ ++ G+D REG T+++S+++ DP+F QTK KL +SE+R V Sbjct: 299 TRTVNDYARSKGILKENDENLTGEDIREGITAIISVRLTDPQFEGQTKTKLGNSEIRGFV 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +S ++ L +LEE+P KIIV+K A+ R AA++AR+LTRRKG L +LPGKLAD Sbjct: 359 DSALSSNLRTFLEENPKIGKIIVEKARSAARARKAAKKARELTRRKGALSNTALPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS RD + +E+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR +K+L+++EI Sbjct: 419 CSSRDTENTEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLNKILNNEEIRA 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+GTGIG D FDINK RY KIIIMTDADVDGAHIRTLLLTFF+R M LI NG +YI Sbjct: 479 LITAIGTGIG-DEFDINKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIENGMIYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +PPLY + +G+ +YV ++ L+ L + + G ++ + L Sbjct: 538 AQPPLYKVKKGRREEYVYNDRGLQKLLNDIGRDKITLQRYKGLGEMNPDQLWE 590 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + + ++ V + Sbjct: 459 ILNVEKARLNKILNNEEIRALITAIGTGIGDEFDINKARYGKIIIMTDADVDGAHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + I + + + + L + IGR I++QRYK Sbjct: 519 LTFFYRYMRPLIENGMIYIAQPPLYKVKKGRREEYVYNDRGLQKLLNDIGRDKITLQRYK 578 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP+ R +L+VKI DA AD+ F+ LMGD+V+PRREFIQE++ Sbjct: 579 GLGEMNPDQLWETTMNPENRIILKVKIEDAVVADETFTTLMGDKVQPRREFIQEHAHEVQ 638 Query: 800 ALDI 803 LD+ Sbjct: 639 NLDV 642 >gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824] gi|18273027|sp|P94604|GYRB_CLOAB RecName: Full=DNA gyrase subunit B gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium acetobutylicum ATCC 824] gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018] Length = 637 Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 290/592 (48%), Positives = 419/592 (70%), Gaps = 10/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L GY Sbjct: 1 MSEK--NEIYDESQIQVLEGLEAVRKRPGMYIGST-GTRGLHHLVYEIVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TVSD+GRG+P +H + EVIMT LHAGGKF +Y+VSGGL Sbjct: 58 CSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ +K EG+I++ ++ G + +P G + ++ GT++ F P + Sbjct: 118 HGVGASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGDS-DEHGTKIYFKPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YDTL RLREL+FLN ++I L D+R + Y+GG+++FVSYL+R+K Sbjct: 177 IFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLNRNK 234 Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + + PI ++GS N S+++A+++NDGY+EN+ F NNI +GGTHL+G ++ALTR Sbjct: 235 EVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTALTRV 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y +K K++ +++ G+D REG T+V+S+K+ +P+F QTK KL ++EVR +V+S Sbjct: 295 INDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSI 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +++ +S +LEE+P K+++ K L AS R+AA++AR++TRRK VL+ SLPGKLADCS Sbjct: 355 ISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D ++ E+++VEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ R DK+L+S+EI + T Sbjct: 415 KDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMAT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A G GIG+D FD++KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M LI G ++I +P Sbjct: 475 AFGGGIGKD-FDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 PLY +T+ + Y ++ LED L + ++ G ++ L Sbjct: 534 PLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWE 585 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+ I + N E + + + + + + K + Sbjct: 446 LPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGIGKDFDVSKLRYHK-----------I 494 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + + I + + + + L Sbjct: 495 IIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELE 554 Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 D + +G K +QRYKGLGEMN QLWETT+NP+ R+L++V I DA AD++F+ LM Sbjct: 555 DVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILM 614 Query: 782 GDEVEPRREFIQENS-LPSALDI 803 GD+V+PRR+FI+EN+ LD+ Sbjct: 615 GDKVDPRRKFIEENATKVVNLDV 637 >gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus 5a2] gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus 5a2] Length = 651 Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 287/602 (47%), Positives = 398/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M + + ++Y ADSIQ+L+GL+AV+KRP+MYIGD G GLHH+++EV+DN+IDE+L G Sbjct: 1 MEETQKLQNTYSADSIQVLEGLEAVRKRPAMYIGDI-GPKGLHHLVWEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I V ++ D S TVSDNGRGIPTD+H +E SA EV+MT LHAGGKF++ +YKVSGG Sbjct: 60 YCTTIKVQIHSDNSITVSDNGRGIPTDIHAKEKRSALEVVMTVLHAGGKFDKGTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ L+ + R+G IY+ + G P+ G+ GT + F P Sbjct: 120 LHGVGVSCVNALSTHLQATVYRDGKIYQQEYAKGAPLYPVKEVGTTT-LRGTTIHFQPDD 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235 IF+ +NY T+ RL EL++LN+ + I L D R + + T +GG+ FV+Y Sbjct: 179 SIFTTTTYNYSTIAARLGELAYLNAGLTIELTDLREQDQEGNFLQETFHSEGGLAEFVAY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ L+ PI ++G + ++ + +A+ +N G+ ENV+ + NNI +GGTH++G R A Sbjct: 239 LDDAREKLIPQPIYMEGEKYDVPVQVALSYNTGFTENVVSYVNNINTIEGGTHVAGFRRA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + SY EKS +K K ++GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 LTRTLKSYAEKSNLLEKAKVEIVGDDFREGLTAVISVKVSEPQFEGQTKTKLGNAEVVGA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+S V++ L +LEEHP EAKIIV KV+ A+ R AAR+AR++ +RK VL LPGKLA Sbjct: 359 VDSCVSETLQNYLEEHPQEAKIIVSKVILAAQARHAARKAREMVQRKNVLTGGGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS+ DP EL+LVEGDSAGG+AKQGR R QAILPLRGKILNVE+A+ ++ ++++ Sbjct: 419 DCSDNDPAACELYLVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKAQEHRIYDNEQLR 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +I ALG G + KLRYHK+IIMTDADVDG+HIRTL+LTFF+R + L+ Sbjct: 479 NMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSHIRTLILTFFYRYLKVLLER 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESL----EDYLINQSLSEEIELFCDSKGVISKNDL 587 GFLYI PPLY + RG +Y E+ +D+ + G ++ L Sbjct: 539 GFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDGKTESVNIQRYKGLGEMNAEQL 598 Query: 588 RN 589 Sbjct: 599 WT 600 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 621 VFNCESDQEINVSLASKLANRL-----NFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + +L N + F E+ K+ + ++ V Sbjct: 460 ILNVEKAQEHRIYDNEQLRNMIMALGITFGTEEDAKAVNLEKLRYHKVIIMTDADVDGSH 519 Query: 676 VLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNG-DKIKITGPCSLLDTIFSIGRKG 733 + + I +F +Y ++ R L L L+ G + + + G Sbjct: 520 I--RTLILTFFYRYLKVLLERGFLYIALPPLYLVKRGSESRYCWTEQDRIAAVKDFSPDG 577 Query: 734 ----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 +++QRYKGLGEMNA QLW TT++P RSL +V I A++AD LFS LMGDEV PRR Sbjct: 578 KTESVNIQRYKGLGEMNAEQLWTTTMDPAVRSLKQVTIESAAEADHLFSILMGDEVAPRR 637 Query: 790 EFIQENSLPSALDI 803 +FIQ ++ + +DI Sbjct: 638 DFIQLHAKYAQIDI 651 >gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941] gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941] Length = 644 Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 290/590 (49%), Positives = 400/590 (67%), Gaps = 9/590 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 S YDA SIQ+L+GL+AVK+RP MYIG T G GLHH+++E++DN+IDE+L GY Sbjct: 8 KHSKSDYDASSIQVLEGLEAVKRRPGMYIGST-GPRGLHHLVWEIVDNSIDEALAGYCTE 66 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I+VT++ D S TVSD+GRG+P + ++ G SAAEVIMT LHAGGKF+ ++YKVSGGLHGV Sbjct: 67 ISVTVHPDNSVTVSDDGRGMPVGVMEKYGKSAAEVIMTTLHAGGKFDGQTYKVSGGLHGV 126 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFLPSSD 180 G SVVNALS WL+L I+R+G+++ + G L G TGT V F P Sbjct: 127 GASVVNALSEWLELEIRRDGHLWTQRYERGFPVTGLERGRKLGK-REGTGTTVRFRPDPQ 185 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++DTL R RE +FLN ++I L D+R E RE+ Y+GGI+ FV++++ K Sbjct: 186 IFETVEFSFDTLSRRFRESAFLNKGLRIRLADER-EEGREVVYRYEGGIKDFVAHINEAK 244 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ ++ + + +++AM+WN GY ++V F NNI +GGTHLSG R+ALTR I Sbjct: 245 DPVHKTILYFHREEEAGDVEVAMQWNSGYQDSVFTFANNINTHEGGTHLSGFRAALTRTI 304 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + ++ GDD REG +V+S+K+ +P+F QTK KL ++E++ +VES Sbjct: 305 NEYARQKGLLKEKEENLTGDDIREGLAAVISVKLREPQFEGQTKTKLGNTEIKGLVESAT 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N L+ +LEE+P +A+ IV K ++AS R AA +AR RKG L+ ++LPGKLADCS + Sbjct: 365 NRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAI-RKGYLESSTLPGKLADCSSK 423 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+A +K+LS+ EI +I+A Sbjct: 424 DPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNAEIQAMISA 483 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G DSF+I + RYHKI+IMTDADVDG+HIRTL+LTF +R MP LI G++YI +PP Sbjct: 484 IGAGVG-DSFNIEEARYHKIVIMTDADVDGSHIRTLVLTFLYRNMPELIEAGYVYIAQPP 542 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 LY IT + YV + L++ L G ++ L Sbjct: 543 LYKITHNRRDVYVYSDAELQETLRRLRADGSATVSRFKGLGEMNPQQLWE 592 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 116/299 (38%), Gaps = 20/299 (6%) Query: 513 IRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 I+ L+ + R + + G I +R + + + YL + +L Sbjct: 356 IKGLVESATNRHLAEFLEENPGQARAIVTKAINASRARLAASKARKAIRKGYLESSTLPG 415 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKD-----FYPNHDKTFIEQAVISGVFNCE 625 ++ S+ + + +E+A I+ V + Sbjct: 416 KLADCSSKDPARSELYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKANINKVLSNA 475 Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 Q + ++ + + + N + K + + D R V + Sbjct: 476 EIQAMISAIGAGVGDSFNIEEARYHKIVIMTDADVDGSHIRTL--VLTFLYRNMPELIEA 533 Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGE 744 G Y + + N + + L +T+ + G ++ R+KGLGE Sbjct: 534 GYVYIAQ---------PPLYKITHNRRDVYVYSDAELQETLRRLRADGSATVSRFKGLGE 584 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 MN QLWETT++P R+LL+V I A+ AD+LF+ LMGD+VEPR+ FI+ N+ + +D Sbjct: 585 MNPQQLWETTMDPANRTLLQVTIDSAATADELFTALMGDKVEPRKAFIEANAREAKNID 643 >gi|323705855|ref|ZP_08117427.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534851|gb|EGB24630.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 633 Score = 633 bits (1634), Expect = e-179, Method: Composition-based stats. Identities = 300/589 (50%), Positives = 410/589 (69%), Gaps = 8/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+++ +Y A IQIL+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 1 MAND---ETYGASQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V D+GRGIPTD+H + G S EV +T LHAGGKFN YKVSGGL Sbjct: 57 CKNIDVIIHKDNSVSVIDDGRGIPTDIHPQTGKSGVEVALTVLHAGGKFNNDVYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS L++ +K+ G +Y+ + G+ L V G ++TGT +TF P + Sbjct: 117 HGVGLSVVNALSKNLEVIVKQNGKVYQQKYERGVPKTDLTVIGET-DETGTTITFSPDGE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD L RLRELSFLN V+I L+D+R + Y+GGI FV YL+R+K Sbjct: 176 IFETLEYDYDVLSQRLRELSFLNKGVKIRLVDERDGKE--DVFHYEGGIVEFVKYLNRNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L PI ++ D +++AM++ND Y EN+ F NNI ++GGTHL G ++ALT+ I Sbjct: 234 EVLHPEPIYMESKSDTYEVEVAMQYNDSYTENIFSFANNIDTREGGTHLIGFKTALTKVI 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K++ +++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+V+S V Sbjct: 294 NDYARKFNIIKENDKNLQGEDVREGLTAIISVKLMNPQFEGQTKTKLGNSEMRSIVDSVV 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+A++EE+P +K+I++K A+ R+AAR+AR+LTRRK L+ SLPGKLADCSE+ Sbjct: 354 TEKLTAFMEENPSLSKVILEKATSAARAREAARKARELTRRKSALESTSLPGKLADCSEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K EL+LVEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++LSS EI +ITA Sbjct: 414 DASKCELYLVEGDSAGGSAKMGRDSKYQAILPLRGKILNVEKARLDRILSSDEIKAMITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PP Sbjct: 474 LGTGIGSD-FDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNIYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I + K + Y ++ L++ L G + L + Sbjct: 533 LYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYKGLGEMDAEQLWD 581 Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDRILSSDEIKAMITALGTGIGSDFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + I + + N L + + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNIYIAQPPLYKIEKNKKVYYAYSDKELDNILKEIGRENYNVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEM+A QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 570 GLGEMDAEQLWDTTMDPEKRTMLKVSLDDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|313894727|ref|ZP_07828288.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976636|gb|EFR42090.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 684 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 300/583 (51%), Positives = 408/583 (69%), Gaps = 4/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y A IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L GY D + V Sbjct: 54 DADYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDTVAV 112 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S TV DNGRGIP D+H E G+ A EV++T LHAGGKF YKVSGGLHGVGVS Sbjct: 113 TIHRDNSITVVDNGRGIPVDMH-ESGMPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 171 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSS + ++++R+G+IYE++F G L G TGT V F+P +IF+V Sbjct: 172 VVNALSSSMDVQVRRDGHIYEIAFARGNTTEKLHEVG-TSETTGTRVHFVPDPEIFTVTT 230 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++++TL+HRLREL+FLN + I+L D+R E R T + GGI +FVS+L+R K+ + + Sbjct: 231 YSFETLKHRLRELAFLNHGITITLTDERGEELRSETFHFDGGIRSFVSHLNRKKETINEE 290 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR + + Sbjct: 291 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARR 350 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEVR +V+S V +GL+ Sbjct: 351 LSVLKEKDGNLSGEDVREGLTAVISLKVREPQFEGQTKTKLGNSEVRGIVDSIVTEGLTE 410 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P K ++ K L AS R+AAR+AR+LTRRK L+++SLPGKLADCS +DP + E Sbjct: 411 YFEENPNVTKKVLDKALMASRAREAARKARELTRRKNALEVSSLPGKLADCSVKDPDQCE 470 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGIG Sbjct: 471 IYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGIG 530 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ FD++K RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ +G +YI +PPLY I + Sbjct: 531 EE-FDLSKRRYSKIIIMTDADVDGAHIRTLLLTFFYRYMRPLVDHGHVYIAQPPLYQIRK 589 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K Y +E L G ++ L Sbjct: 590 DKKHFYTYTDEEQAKKLDEIGRDGVTIQRYKGLGEMNPEQLWE 632 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + S ++ V + + Sbjct: 501 ILNVEKARLDKIFANAEIRTMITAFGTGIGEEFDLSKRRYSKIIIMTDADVDGAHI--RT 558 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP--CSLLDTIFSIGRKGISMQR 738 + +F +Y R + DK + IGR G+++QR Sbjct: 559 LLLTFFYRYMRPLVDHGHVYIAQPPLYQIRKDKKHFYTYTDEEQAKKLDEIGRDGVTIQR 618 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT+NP R++LRV DA AD+LF+ LMGD+VEPRR+FI+EN+ L Sbjct: 619 YKGLGEMNPEQLWETTMNPSERTMLRVAAEDAEAADELFTILMGDKVEPRRQFIEENARL 678 Query: 798 PSALDI 803 LDI Sbjct: 679 VRNLDI 684 >gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942] gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942] Length = 638 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 287/588 (48%), Positives = 410/588 (69%), Gaps = 5/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q +SYD + IQ+L+GL+AV+KRP MYIG T+ GLHH+++E++DN+IDE+L GY Sbjct: 2 EQQQNSYDENQIQVLEGLEAVRKRPGMYIGSTNS-KGLHHLVWEIVDNSIDEALAGYCSE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I + + D S TV DNGRGIP + ++ G A EVIMT LHAGGKF+ YKVSGGLHGV Sbjct: 61 INIEIEKDNSITVRDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L + + R+G I+ ++ G+ + V G + TGT F+P +IF+ Sbjct: 121 GASVVNALSTTLDVTVHRDGKIHYQAYERGVPMADVEVIGET-DTTGTITHFVPDPEIFT 179 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++YD L R+REL+FL V+I++ DKR + ++ Y+GGI+++V YL+R K+ Sbjct: 180 ETTVYDYDLLSSRVRELAFLTKGVKITIEDKREEKEQKNEYCYEGGIKSYVEYLNRSKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI I+G++D I++++A+++ND Y N+ F NNI +GGTH +G ++ LTR I Sbjct: 240 VHEEPIYIEGTKDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K+ ++ GDD REG T+++SIK PDP+F QTK KL +SE R++ ++ ++ Sbjct: 300 YARKKGIFKESDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L E+P A+ ++ K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +DP Sbjct: 360 ALETFLFENPDSARKVIDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ ++ITALG Sbjct: 420 SISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D F++ K RYHK++IMTDADVDGAHIRTLLLTFF+R M +I NG++YI +PPLY Sbjct: 480 TGIGED-FNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYIYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +GK ++Y +++ LE+ L + + G ++ L Sbjct: 539 KVQQGKRVEYAYNDKQLEEVLSTLPQTPKPGLQRYKGLGEMNATQLWE 586 Score = 172 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722 V + F + + I + I L + G +++ + Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIENGYIY-IAQPPLYKVQQGKRVEYAYNDKQLEEV 558 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L T+ + G+ QRYKGLGEMNA+QLWETT++PDTR+LL+V + DA AD+ F LMG Sbjct: 559 LSTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPDTRTLLQVTLEDAMDADETFEMLMG 616 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR FI+ N+ LDI Sbjct: 617 DKVEPRRNFIEANARYVKNLDI 638 >gi|81251094|gb|ABB69892.1| DNA gyrase subunit B [Nitrosovibrio sp. RY3C] Length = 559 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 328/548 (59%), Positives = 417/548 (76%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G+ D Sbjct: 15 NPANSNDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCD 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITVT++ D S +V DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 75 EITVTIHPDNSVSVLDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGL 134 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R G +++ F G PL + G GTEV FL S Sbjct: 135 HGVGVSVVNALSEWLRLTIRRGGLTHQIEFRMGAPVAPLAILGKTE-RRGTEVHFLASKQ 193 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 194 IFGDIEYHYDIFARRLRELSFLNNGVKIHLVDQRTGKE--ETFAFAGGVKSFVEYINRAK 251 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + +G ++ I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 252 TVLHPNIFYARGEKEGIVVEVSMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 311 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+EK+ SKK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VE V Sbjct: 312 NSYIEKNELSKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPAVEEIV 371 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 LS +L+E PL+AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 372 TQKLSDFLQERPLDAKTICGKIIDAARAREAARKARELTRRKGVLDGLGLPGKLADCQEK 431 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP EL+LVEG SAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 432 DPALCELYLVEGGSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIISLITA 491 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PP Sbjct: 492 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 551 Query: 541 LYGITRGK 548 LY + GK Sbjct: 552 LYKVKHGK 559 >gi|81251082|gb|ABB69883.1| DNA gyrase subunit B [Nitrosospira sp. NIJS16] Length = 555 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 334/543 (61%), Positives = 422/543 (77%), Gaps = 5/543 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D I+V Sbjct: 16 ADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVI 75 Query: 68 LNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 ++ D S TV DNGRGIPT + H +E SAAE++MT LHAGGKF+ SYKVSGGLHGVGV Sbjct: 76 IHPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGV 135 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS WL+L I+REG I+++ F G+ PL VTG +GTEV FL S +IF Sbjct: 136 SVVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKTE-RSGTEVHFLASKEIFGDI 194 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K L Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSVLHP 252 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + G +D I +++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + +Y+E Sbjct: 253 NIFYAAGEKDRIMVEVAMQWNDSYSEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLNNYIE 312 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V+ L+ Sbjct: 313 KNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSLKLA 372 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP +AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+DP S Sbjct: 373 EFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDPALS 432 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI LITALGTGI Sbjct: 433 ELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAALITALGTGI 492 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PPLY I Sbjct: 493 GKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKIK 552 Query: 546 RGK 548 G+ Sbjct: 553 HGR 555 >gi|288561854|gb|ADC53563.1| DNA gyrase subunit beta [Acidovorax citrulli] Length = 764 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 320/768 (41%), Positives = 451/768 (58%), Gaps = 54/768 (7%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT-- 85 P MYIGDT +GLHH+++EV+DN+IDE+L G+ D I VT++ D S +V DNGRGIPT Sbjct: 1 PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIHSDNSISVVDNGRGIPTGV 60 Query: 86 ---DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKRE 142 D H E SAAE+ +T LHAGGKFNQ SYKVSGGLHGVGVS VNALS L+L ++R+ Sbjct: 61 KMDDKH-EPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNALSKMLRLTVRRD 119 Query: 143 GNIYEMSFI------------NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNY 189 G ++ + F NG+ +P+ VTG + GTEV FLP ++IF + F+Y Sbjct: 120 GKVHLLEFSQGFVQSRILETVNGVEVSPMRVTGET-DKRGTEVHFLPDTEIFKENNDFHY 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 + L RLRELSFLN+ V+I L D+R+ + GG+ FV +++ KK L + Sbjct: 179 EILAKRLRELSFLNNGVRIRLKDERTGKE--DDFSGAGGVMGFVQFINASKKVLHPNAFH 236 Query: 250 IQGSRD----------NISIDLAMRWNDGYHENVLCFTNNIPQKDG--GTHLSGLRSALT 297 GSR I +++AM+WNDG++E+ + L+GLR+A+T Sbjct: 237 ATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESRCFASPPTTSPHATAAPTLTGLRAAMT 296 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I Y+E++ +KK K V GDD REG VLS+K+P+P+FSSQTK+KLVSSEVR+ VE Sbjct: 297 RVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSSQTKDKLVSSEVRAPVE 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V L+ +LEE P +AKI+ K+++A+ R+AAR+AR++TRRKGVLD LPGKLADC Sbjct: 357 DIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRRKGVLDGMGLPGKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR++K+L+S EI TL Sbjct: 417 QEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTL 476 Query: 478 ITALGTGIGQ-----------DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ITALGTGIG+ D F+++KLRY +IIIMTDADVDGAHIRTLLLTFF+RQMP Sbjct: 477 ITALGTGIGKASADGTGKGGADDFNVDKLRYRRIIIMTDADVDGAHIRTLLLTFFYRQMP 536 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKN 585 L+ G +YI +PPLY + GK Y+KD +L+ +L+ +L + + + Sbjct: 537 ELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVALRDASVTTGGEQARTLDGE 596 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF- 644 L + +I+ D+ + N ++ ++ S + A Sbjct: 597 TLSTLAQKHQVAEAVIERLSAFMDREALRAIADGVALNLDTVEDAEASAVALQAKLRELT 656 Query: 645 ---IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 + + + + + + R G + ++ + ++ Sbjct: 657 TTGVPAEVAGEFDARTDKPVLRISRRHHGNIKSSIITQDFVHGADYAALAEAAHTFRGLL 716 Query: 702 LTILSLICNG----DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 ++ + K++ + + + S QRYKGLGEM Sbjct: 717 GEGAKVLRGEGERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEM 764 >gi|81251066|gb|ABB69871.1| DNA gyrase subunit B [Nitrosospira sp. PJA1] Length = 555 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 332/548 (60%), Positives = 424/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D Sbjct: 11 KSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSITVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R+G I+++ F G+ PL TG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYATGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|167461556|ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381377|ref|ZP_08055380.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154953|gb|EFX47224.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 636 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 299/646 (46%), Positives = 425/646 (65%), Gaps = 14/646 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L G+ Sbjct: 1 MT--LNQNTYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEVVDNSIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV DNGRGIP H + EV++T LHAGGKF + YKVSGGL Sbjct: 58 CTKIDVTIHEDNSITVIDNGRGIPVGEHPKLKKPTLEVVLTVLHAGGKFGGEGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L +KR+G+IY+ F G+ + V G GT +TF P ++ Sbjct: 118 HGVGVSVVNALSESLVATVKRDGHIYQQEFKRGVPQYGVKVIGDTDEY-GTVITFKPDAE 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ ++Y+ LQ R+REL+FLN ++I+L D+R+ +GGI +FV YL+++ Sbjct: 177 IFTETTVYDYEVLQSRIRELAFLNKELEINLKDERTGASHSYKY--EGGIISFVEYLNQN 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++PL Q PI ++G++DNI +++A+++ND ++EN+ F NNI +GGTH SG +SALTR Sbjct: 235 REPLNQPPIYVEGNKDNIQVEIAIQYNDNFNENIYSFANNIHTHEGGTHESGFKSALTRV 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K ++ GDD REG +++S+K+PDP+F QTK KL +SEVR +VES Sbjct: 295 INDYARKTNVLKDSNSNLSGDDVREGIAAIISVKIPDPQFEGQTKTKLGNSEVRGIVESL 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L +LEE+P AK I++K + A+ R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 355 LAEKLQEFLEENPSTAKRIMEKSMQAARAREAARKARELTRRKSALEVSSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LS+ EI +IT Sbjct: 415 KDAAISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNMEIRAIIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGI + FD++K RYHKIIIMTDADVDGAHIRTLLLTFFFR M LI G++YI +P Sbjct: 475 ALGTGI-SEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598 PLY + + K+++Y +++ + + ++ G ++ L +D Sbjct: 534 PLYKLEKNKTVRYAYNDKQRAEIMKEFGEGSKVNVQRYKGLGEMNAGQLWET-----TMD 588 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + I+ I + ++ + + N Sbjct: 589 PESRTLLQVNIEDAIKADAIFDMLMGDNVEPRRNFIHEHAKYVTNL 634 Score = 170 bits (431), Expect = 9e-40, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 4/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + + + + S ++ Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILSNMEIRAIITALGTGISEDFDLSKARYHKIIIM 497 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F F K I + + + L N + + Sbjct: 498 TDADVDGAHIRTLLLTFFFRYMRKLIEAGYVYIAQPPLYKLEKNKTVRYAYNDKQRAEIM 557 Query: 727 FSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G +++QRYKGLGEMNA QLWETT++P++R+LL+V I DA +AD +F LMGD V Sbjct: 558 KEFGEGSKVNVQRYKGLGEMNAGQLWETTMDPESRTLLQVNIEDAIKADAIFDMLMGDNV 617 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR FI E++ LD+ Sbjct: 618 EPRRNFIHEHAKYVTNLDV 636 >gi|81251043|gb|ABB69854.1| DNA gyrase subunit B [Nitrosospira multiformis] Length = 555 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 334/548 (60%), Positives = 425/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L GY D Sbjct: 11 KSKSSADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R+G I+++ F G+ PL TG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVGPLATTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I LID+R+ + T + GG+++FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLIDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +D I+++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYAAGEKDRIAVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185] Length = 690 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 308/581 (53%), Positives = 407/581 (70%), Gaps = 5/581 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A+ IQIL+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE+L GY D I VT+ Sbjct: 63 DYGANQIQILEGLEAVRKRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDHIDVTI 121 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D S TV DNGRGIP D+H E G A EV++T LHAGGKF + YKVSGGLHGVGVSVV Sbjct: 122 EKDNSITVVDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGEGYKVSGGLHGVGVSVV 180 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ + + +KR+G I+ + F G+ PL V G TGT+V F+P +IF+V ++ Sbjct: 181 NALSTSMDVEVKRDGKIHSIRFEQGVTAAPLTVIGETE-KTGTKVHFVPDPEIFTVTQYS 239 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +DTL+HRLREL+FLN + I L+DKR E RE + FY+GGI +FV +L+R K+ + +PI Sbjct: 240 FDTLKHRLRELAFLNQGITIRLVDKR-GEGREESYFYEGGIRSFVEHLNRKKEVIHPTPI 298 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR + K Sbjct: 299 YFNGIKDDTVVEIAMQYNDSYMENIYSFVNNINTEEGGTHLAGFKIALTRAANDFARKQG 358 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K ++ G+D REG T V+S+K+ +P+F QTK KL +SEVR +V+S V +GL+ + Sbjct: 359 ILKDKDGNLSGEDVREGLTCVISLKIHEPQFEGQTKTKLGNSEVRGIVDSIVTEGLTEYF 418 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE+P K +++K + AS R+AAR+AR+LTRRK L+++SLPGKLADCS +DP+++E++ Sbjct: 419 EENPAITKKVIEKAIMASRAREAARKARELTRRKNALEVSSLPGKLADCSIKDPEQAEIY 478 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGI D Sbjct: 479 LVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI-SD 537 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI K RY KIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +PPLY I +GK Sbjct: 538 DFDIAKRRYGKIIIMTDADVDGSHIRTLLLTFFYRYMKPLIERGHVYIAQPPLYQIRKGK 597 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 Y ++ L L G ++ L Sbjct: 598 KHWYTYSDDELAQKLNEVGRDNATVQRYKGLGEMNPEQLWE 638 Score = 187 bits (474), Expect = 9e-45, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + ++ V + Sbjct: 507 ILNVEKARLDKIFANAEIRTMITAFGTGISDDFDIAKRRYGKIIIMTDADVDGSHIRTLL 566 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRY 739 F + I + L I G K L + +GR ++QRY Sbjct: 567 LTFFYRYMKPLIERGHVY-IAQPPLYQIRKGKKHWYTYSDDELAQKLNEVGRDNATVQRY 625 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT++P+ R++L+V++ DA +AD+LF+ LMGD+VEPRR+FI+E++ Sbjct: 626 KGLGEMNPEQLWETTMDPEGRTMLQVRMEDAEEADELFTILMGDKVEPRRQFIEEHAKHV 685 Query: 800 -ALDI 803 LDI Sbjct: 686 RNLDI 690 >gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824] Length = 637 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 290/592 (48%), Positives = 419/592 (70%), Gaps = 10/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L GY Sbjct: 1 MSEK--NEIYDESQIQVLEGLEAVRKRPGMYIG-TTGTRGLHHLVYEIVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TVSD+GRG+P +H + EVIMT LHAGGKF +Y+VSGGL Sbjct: 58 CSHIKVFIHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGAYRVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ +K EG+I++ ++ G + +P G + ++ GT++ F P + Sbjct: 118 HGVGASVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFEKIGDS-DEHGTKIYFKPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YDTL RLREL+FLN ++I L D+R + Y+GG+++FVSYL+R+K Sbjct: 177 IFEDTEYDYDTLSQRLRELAFLNKGIKIELTDERHDKN--EIFHYEGGLKSFVSYLNRNK 234 Query: 241 KPLMQSPIRIQGS-RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + + PI ++GS N S+++A+++NDGY+EN+ F NNI +GGTHL+G ++ALTR Sbjct: 235 EVVFKEPIYVEGSIDSNYSVEIALQYNDGYNENIFSFANNIHTIEGGTHLAGFKTALTRV 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y +K K++ +++ G+D REG T+V+S+K+ +P+F QTK KL ++EVR +V+S Sbjct: 295 INDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSI 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +++ +S +LEE+P K+++ K L AS R+AA++AR++TRRK VL+ SLPGKLADCS Sbjct: 355 ISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D ++ E+++VEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ R DK+L+S+EI + T Sbjct: 415 KDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMAT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A G GIG+D FD++KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M LI G ++I +P Sbjct: 475 AFGGGIGKD-FDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 PLY +T+ + Y ++ LED L + ++ G ++ L Sbjct: 534 PLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWE 585 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+ I + N E + + + + + + K + Sbjct: 446 LPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGIGKDFDVSKLRYHK-----------I 494 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + + I + + + + L Sbjct: 495 IIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELE 554 Query: 724 DTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 D + +G K +QRYKGLGEMN QLWETT+NP+ R+L++V I DA AD++F+ LM Sbjct: 555 DVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILM 614 Query: 782 GDEVEPRREFIQENS-LPSALDI 803 GD+V+PRR+FI+EN+ LD+ Sbjct: 615 GDKVDPRRKFIEENATKVVNLDV 637 >gi|81251051|gb|ABB69860.1| DNA gyrase subunit B [Nitrosospira sp. HBN8222A] gi|81251059|gb|ABB69866.1| DNA gyrase subunit B [Nitrosospira sp. TCH711] gi|81251063|gb|ABB69869.1| DNA gyrase subunit B [Nitrosospira sp. TCH716] Length = 555 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 333/548 (60%), Positives = 425/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L GY D Sbjct: 11 KSKSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGL Sbjct: 71 EISVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R+G ++++ F G+ PL VTG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKVHQIEFRMGVPMTPLAVTGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPNIFYAAGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|254230346|ref|ZP_04923732.1| DNA gyrase, B subunit [Vibrio sp. Ex25] gi|151937138|gb|EDN56010.1| DNA gyrase, B subunit [Vibrio sp. Ex25] Length = 563 Score = 632 bits (1629), Expect = e-178, Method: Composition-based stats. Identities = 320/522 (61%), Positives = 415/522 (79%), Gaps = 8/522 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L G+ Sbjct: 1 MSEN-----YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGH 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +VSD+GRGIPT++H EE +SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 56 CKDIVVTIHEDNSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLHAGGKFDDNSYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS ++L I R G+I+ ++ +G PL V G + TGT++ F PS++ Sbjct: 116 HGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVGDT-DKTGTQIRFWPSAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 FS +F+YD L RLRELSFLNS V I L+D+R + Y+GGI+AFV +L+ +K Sbjct: 175 TFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADK-HDHFMYEGGIQAFVDHLNTNK 233 Query: 241 KPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 P+++ R++ IS+++AM+WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+ALTR Sbjct: 234 TPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRT 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S+++K SKK K + GDD REG T+V+S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 294 LNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESA 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + LS +L E+P EAK++ K++DA+ R+AAR+AR++TRRKG LD+A LPGKLADC E Sbjct: 354 MGEKLSEFLIENPTEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQE 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLIT Sbjct: 414 KDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 ALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF Sbjct: 474 ALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFF 515 >gi|125974861|ref|YP_001038771.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405] gi|256003883|ref|ZP_05428870.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360] gi|281418684|ref|ZP_06249703.1| DNA gyrase, B subunit [Clostridium thermocellum JW20] gi|125715086|gb|ABN53578.1| DNA gyrase subunit B [Clostridium thermocellum ATCC 27405] gi|255992221|gb|EEU02316.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 2360] gi|281407768|gb|EFB38027.1| DNA gyrase, B subunit [Clostridium thermocellum JW20] gi|316939072|gb|ADU73106.1| DNA gyrase, B subunit [Clostridium thermocellum DSM 1313] Length = 641 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 305/646 (47%), Positives = 428/646 (66%), Gaps = 14/646 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + S YD +IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ + Sbjct: 5 NNEMSKYDESNIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIMDNSIDEALAGFCNE 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S T DNGRGIP +H + GIS EV+ T LHAGGKF+ + YKVSGGLHGV Sbjct: 64 IKVIIHKDNSITNIDNGRGIPVGIHPKLGISTVEVVHTILHAGGKFDGQGYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS +L++ + R+G+IY + G P+ + G N TGT+ TF P +IF Sbjct: 124 GASVVNALSEFLEVEVFRDGHIYRQRYERGKPVTPVEIIGDT-NLTGTKTTFKPDPEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +F+++ L RLREL+FLN ++I L D+R EP E + Y+GGI +FV Y+DR+K PL Sbjct: 183 VTEFDFEVLLTRLRELAFLNKGLKIILRDERPEEPVEKHLHYEGGIVSFVEYMDRNKDPL 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 PI G +D +++AM++N D Y EN+ F NNI +GGTHL+G ++A+T+ + Sbjct: 243 H-EPIYFDGYKDGCYVEIAMQYNKDVYVENIHSFANNISTAEGGTHLTGFKTAITKVLND 301 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K K++ ++++G+D REG T+V+S+K+PDP+F QTK KL +SEVRS VES +N+ Sbjct: 302 YAKKFNFLKENDKNLLGEDVREGLTAVISVKIPDPQFEGQTKTKLGNSEVRSFVESIINE 361 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +++LEE+P ++I+ K + ++ R+AAR+AR+LTRRK VL+ ++LPGKLADC+ERDP Sbjct: 362 KFASFLEENPSVTRLILDKCIMSARAREAARKARELTRRKNVLETSTLPGKLADCTERDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 E+F+VEGDSAGGSAKQGR+R QAILPL GK+LNVE+AR DK+ + ++ +I ALG Sbjct: 422 SLCEIFIVEGDSAGGSAKQGRNRRFQAILPLWGKMLNVEKARVDKVYGNDKLTPVIMALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 T IG FDI KLRYHKIIIM DADVDGAHIRTLLLTFF+R M LI NG++YI +PPLY Sbjct: 482 TNIG-QDFDITKLRYHKIIIMADADVDGAHIRTLLLTFFYRYMTPLITNGYVYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDKL 600 IT+GK+ Y ++ LE + +E G ++ L +D Sbjct: 541 KITKGKTELYAYNDSELEKIIRENQWKKEECTIQRFKGLGEMNPEQLWTT-----TMDPE 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA--SKLANRLNF 644 + + I I + + + + +KL L+ Sbjct: 596 TRTILRVELEDAIAADEIFTILMGDKVEPRKEFIQANAKLVTNLDI 641 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG---RKGISM 736 + +F +Y + +N L I G S L+ I ++ ++ Sbjct: 514 LLLTFFYRYMTPLITNGYVYIAQPPLYKITKGKTELYAYNDSELEKIIRENQWKKEECTI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QR+KGLGEMN QLW TT++P+TR++LRV++ DA AD++F+ LMGD+VEPR+EFIQ N+ Sbjct: 574 QRFKGLGEMNPEQLWTTTMDPETRTILRVELEDAIAADEIFTILMGDKVEPRKEFIQANA 633 Query: 797 -LPSALDI 803 L + LDI Sbjct: 634 KLVTNLDI 641 >gi|81251086|gb|ABB69886.1| DNA gyrase subunit B [Nitrosospira sp. NIJS18] Length = 555 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 333/543 (61%), Positives = 422/543 (77%), Gaps = 5/543 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L G+ D I+V Sbjct: 16 ADYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGHCDEISVI 75 Query: 68 LNMDGSCTVSDNGRGIPTDL-HKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 ++ D S TV DNGRGIPT + H +E SAAE++MT LHAGGKF+ SYKVSGGLHGVGV Sbjct: 76 IHPDNSVTVQDNGRGIPTGIKHDDELKRSAAEIVMTELHAGGKFDSNSYKVSGGLHGVGV 135 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS WL+L I+REG I+++ F G+ PL VTG + +GTEV FL S +IF Sbjct: 136 SVVNALSEWLRLSIRREGKIHQIEFRMGVPVAPLAVTGKTEH-SGTEVHFLASKEIFGDI 194 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K L Sbjct: 195 EYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSVLHP 252 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + G +D I +++AM+WND Y E VLCFTNNIPQKD GTHL+GLR+A+TR + +Y+E Sbjct: 253 NIFYAAGEKDRIMVEVAMQWNDSYSEQVLCFTNNIPQKDRGTHLTGLRAAMTRTLNNYIE 312 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V+ L+ Sbjct: 313 KNDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSLKLA 372 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L EHP +AK I K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+DP S Sbjct: 373 EFLLEHPSDAKTICGKIIDAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDPALS 432 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI LITALGTGI Sbjct: 433 ELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIAALITALGTGI 492 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PPLY I Sbjct: 493 GKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLYKIK 552 Query: 546 RGK 548 G+ Sbjct: 553 HGR 555 >gi|81251106|gb|ABB69901.1| DNA gyrase subunit B [Nitrosomonas sp. OZK11] Length = 554 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 335/545 (61%), Positives = 419/545 (76%), Gaps = 5/545 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Y++DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L GY D Sbjct: 13 ESNQRDYNSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYCDD 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I+VT++ D S ++ DNGRGIPTD+ + E SAAE++MT LHAGGKF+ SYKVSGGLH Sbjct: 73 ISVTIHADNSVSIHDNGRGIPTDIKQDDELKRSAAEIVMTELHAGGKFDDNSYKVSGGLH 132 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WL+L I R G++++M F +G+ PL VTG GTEV FL S + Sbjct: 133 GVGVSVVNALSEWLRLTIHRNGHVHQMEFRDGVAVAPLKVTGQTE-KHGTEVHFLASQSV 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F ++Y+ RLRELSFLN ++I L+D R + RE T + GGI FV Y++R K Sbjct: 192 FGDVTYHYEIFAKRLRELSFLNHGIKIRLVDLR--DDREETFAFTGGIRNFVEYINRSKN 249 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + QG +DNI++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 250 VLHPNIFYAQGLKDNITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLN 309 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y+EK+ ++K K GDD REG T VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 310 NYIEKNELARKAKVDTTGDDMREGMTCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVT 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 LS +L E+P EAKII K++DA+ R+AAR+AR+LTRRKGVLD LPGKLADC E+D Sbjct: 370 QKLSDFLLENPNEAKIICNKIIDAARAREAARKARELTRRKGVLDSMGLPGKLADCQEKD 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +LITAL Sbjct: 430 PKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSLITAL 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI +PPL Sbjct: 490 GTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPPL 549 Query: 542 YGITR 546 Y I Sbjct: 550 YKIKH 554 >gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126] gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126] Length = 653 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 294/604 (48%), Positives = 406/604 (67%), Gaps = 17/604 (2%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS + +N Y A +I +L+GL+AV+KRP+MYIGD G GLHHMI+EV+DN+IDE++ Sbjct: 1 MSTEKDNKNKDYSAGNITVLEGLEAVRKRPAMYIGDV-GVKGLHHMIWEVVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ ITV +N D S TV D+GRGIP D+H++EG SA EV+MT LHAGGKF++ SYKVSG Sbjct: 60 GHCTTITVEINEDNSVTVMDDGRGIPVDIHEKEGRSALEVVMTVLHAGGKFDKDSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GLHGVGVS VNALS+ LK + R+G IYE + G P+ G + TGT++ F P Sbjct: 120 GLHGVGVSCVNALSTMLKATVYSRDGKIYEQEYSEGFPKEPVKPVGET-DVTGTKIQFKP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 + IF +F Y+T+ RLREL++LN+ ++I L D R + + +E F +GG+ FV Sbjct: 179 DASIFMETEFKYETVASRLRELAYLNAGIKIKLQDHRDKDENGDSKEENFFSEGGLLEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLD ++ L+ PI ++G ++ + + +A+ +N Y ENV+ + NNI +GGTH+SG R Sbjct: 239 EYLDVSREKLIPQPIYMEGEKNGVPVQVALNYNTSYSENVVSYVNNINTIEGGTHVSGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + SY +KS +K K + GDD REG T+++S+K+ +P+F QTK KL +S+V Sbjct: 299 RALTRTLKSYADKSGLLEKQKIEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNSDVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VES V++ L +LEE+P AK IV+KV+ A+ R+AA++AR++ +RK V+ + LPGK Sbjct: 359 GAVESCVSETLQYFLEENPKAAKTIVQKVILAAQARNAAKKAREMVQRKNVMSGSGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCSE+DP EL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+A+ K+ + E Sbjct: 419 LADCSEKDPSICELYLVEGDSAGGSAKQGRDRNFQAILPLKGKILNVEKAQEHKIYDNDE 478 Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I ++TALG G + + KLRYHKI+IMTDADVDG+HIRTL+LT FFR M LI Sbjct: 479 IKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSHIRTLILTLFFRYMRELI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVISKN 585 G++YI +PPLY I RGK+ +YV E+ + + S G ++ Sbjct: 539 DMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDGTEGAVHLQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWT 602 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N L + E EK+ + +V V Sbjct: 462 ILNVEKAQEHKIYDNDEIKNILTALGVRFGTEDDEKALNLEKLRYHKIVIMTDADVDGSH 521 Query: 676 VLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGD-KIKITGPCSLLDTIFSIGRKG 733 + + I + +Y R + L LI G + + ++ + I G Sbjct: 522 I--RTLILTLFFRYMRELIDMGYVYIAQPPLYLIKRGKTERYVFTEDERVEVVKEISPDG 579 Query: 734 ----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 + +QRYKGLGEMN QLW TT++P TR + +V + A++AD LFS LMGDEV PRR Sbjct: 580 TEGAVHLQRYKGLGEMNPEQLWTTTMDPHTRKMKQVSVESAAEADHLFSMLMGDEVPPRR 639 Query: 790 EFIQENSLPSALDI 803 +FI++N+ + +DI Sbjct: 640 DFIEKNAKYAKIDI 653 >gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 637 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 299/646 (46%), Positives = 405/646 (62%), Gaps = 13/646 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ S Y A SIQIL+GL+AV+KRP MYIGDT GLHH +YEV+DNA+DE+L GY Sbjct: 1 MTATSAQSQYTAQSIQILEGLEAVRKRPGMYIGDT-ATRGLHHCVYEVVDNAVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ DGS +VSDNGRGIP D H G A EV++T LHAGGKFN +YKVSGGL Sbjct: 60 CSEIKVTIHTDGSVSVSDNGRGIPVDPHPSNGRPACEVVLTVLHAGGKFNNDTYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSSWL+L I R G + F GI L G + +GT V F+P + Sbjct: 120 HGVGVSVVNALSSWLELDICRNGKTWGQRFEKGIPVTDLE-GGYETDKSGTTVHFMPDDE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ + L +RLRE++FL ++I+LID R + T Y+GG+ +FV YL+R K Sbjct: 179 IFEEVCFSAEILGNRLREMAFLIPGLKITLIDDREEKEW--TFHYEGGLASFVEYLNRDK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L PI + G RD+I +++ +++NDGYHE + F N I +GGTH+ GLRSA+TR I Sbjct: 237 SSLFPKPIVVSGERDSIFVEVGLQYNDGYHERLFSFANLIHTMEGGTHVIGLRSAITRAI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++ K ++ G+D +EG T V+S+K+ DP+F QTK KL +SEV+ +V+S V Sbjct: 297 NESARRNKVLKDKDANLSGEDLKEGLTCVISVKLGDPQFEGQTKTKLGNSEVKGIVDSIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GL L+E P K +V K + A R+AA++AR+L RK + +LPGKLADCS R Sbjct: 357 YEGLLVALDEDPSVLKPVVDKAVKARQAREAAKKARELV-RKTAMTGLNLPGKLADCSGR 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P+ E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LSS+EI T+I A Sbjct: 416 IPENCEVYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDRILSSKEIRTIIQA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D FD KLRYHKIIIMTDADVDGAHI TLLLTFF+R M L+ G++Y+ +PP Sbjct: 476 LGCGIGED-FDTTKLRYHKIIIMTDADVDGAHISTLLLTFFYRYMKELVEGGYIYLAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALKID 598 LY + G+ +Y+ ++ L ++ + + + G ++ L +D Sbjct: 535 LYRVQIGRHSEYIFSDKDLRTFMNSHKDTGKKIGVQRYKGLGEMNPEQLWET-----TMD 589 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + + + + + N Sbjct: 590 PENRVMKRIEVDDALAADEYFSILMGDKVEPRREFIQAHSHEVQNL 635 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 2/88 (2%) Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + +++ G+K I +QRYKGLGEMN QLWETT++P+ R + R+++ DA AD+ Sbjct: 551 KDLRTFMNSHKDTGKK-IGVQRYKGLGEMNPEQLWETTMDPENRVMKRIEVDDALAADEY 609 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FS LMGD+VEPRREFIQ +S LD+ Sbjct: 610 FSILMGDKVEPRREFIQAHSHEVQNLDV 637 >gi|313902779|ref|ZP_07836176.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965] gi|313466899|gb|EFR62416.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965] Length = 635 Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 294/589 (49%), Positives = 399/589 (67%), Gaps = 5/589 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YD IQ+L+GL+AV++RP MYIG T G GLHH+I+EV+DNA+DE+L G I Sbjct: 1 MARTGYDESQIQVLEGLEAVRRRPGMYIGST-GPRGLHHLIWEVVDNAVDEALAGRCTAI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVTL+ DGSC+V DNG GIP +H + G EV++T LHAGGKF+ ++YKVSGGLHGVG Sbjct: 60 TVTLHADGSCSVRDNGGGIPVGIHPKVGKPTVEVVLTMLHAGGKFDGQAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 VSVVNALS WL++ ++REG I+ + G + L V G+ +DTGT V F P +IF Sbjct: 120 VSVVNALSEWLEVEVRREGRIHRQRYRRGQPETGLEVVGTTAADDTGTYVRFKPDPEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F YD + RLRE++ LNS + I L D+R+ E + GG+ +FV+ L+R K+ L Sbjct: 180 ETEFKYDVVVGRLREIALLNSGLYIELRDERTGERN--LFQFMGGLRSFVALLNRTKEAL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI + RD + +++A++W Y E + F N I +GGTH +G + ALTR + Y Sbjct: 238 HPEPISYKAERDGVEVEMALQWTTSYVETLYSFANTIHTHEGGTHEAGFKMALTRVVNDY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K ++ GDD REG T+VLS+K+P+P+F QTK KL +SEVR VV+S + Sbjct: 298 ARKANLLKNGDENLAGDDIREGLTAVLSVKLPEPQFEGQTKTKLGNSEVRGVVDSVTGEA 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + EE+P A+ +V+K + A R+AAR+AR+LTRRK L++ +LPGKL DC+ RDP Sbjct: 358 LATYFEENPQVARRVVEKAITAMRAREAARKARELTRRKSALEVTALPGKLTDCTVRDPA 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +ELF+VEGDSAGGSAKQGR R QA+LPLRGKILNVE+AR DK+L+ EI LITA+GT Sbjct: 418 MAELFIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDKILAHDEIRALITAIGT 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FDI++ RYHKII+MTDADVDGAHIRTLLLTFFFR M LI G++YI +PPLY Sbjct: 478 GIG-DEFDIHRARYHKIILMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYL 536 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + +GK Y D++ LE + + F + ++ ++ Sbjct: 537 VRQGKEEHYFYDDDQLEAFFRQVGKRMPAQRFKGLGEMNAEQLWETTMN 585 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 2/183 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + ++ V + Sbjct: 451 ILNVEKARLDKILAHDEIRALITAIGTGIGDEFDIHRARYHKIILMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + ++ L +G++ + QR+K Sbjct: 511 LTFFFRYMRPLIEAGYVYIAQPPLYLVRQGKEEHYFYDDDQLEAFFRQVGKR-MPAQRFK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 GLGEMNA QLWETT+NP+TR+LL+V + DA AD +FS LMG VEPRREFI++++ Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTLEDAMAADQIFSILMGSRVEPRREFIEQHARKVR 629 Query: 801 -LD 802 LD Sbjct: 630 FLD 632 >gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646] gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646] Length = 637 Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 308/643 (47%), Positives = 412/643 (64%), Gaps = 14/643 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + YD I++L+GL+ V+ RP MYIG TD GLHH++YEV+DN+IDE+L G+ I Sbjct: 3 KKTVYDETKIEVLEGLEHVRLRPGMYIGSTDS-RGLHHLVYEVVDNSIDEALAGFCKNIL 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N DGS TV D+GRGIP +H + G A EV +T LHAGGKF YKVSGGLHGVGV Sbjct: 62 VTINKDGSITVDDDGRGIPVKIHPKVGKPALEVALTMLHAGGKFGTGGYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS WL++ +KR+G Y + G + G A DTGT++TF+P IF Sbjct: 122 SVVNALSKWLEVEVKRDGFKYFQRYERGKPVTEVKKIGEAS-DTGTKITFMPDDQIFEDT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FNYD L RLRE +FLN ++I + D R+ + + Y+GGI +FV YL+R+K L + Sbjct: 181 SFNYDILAQRLREQAFLNRGLKIEIKDLRTGKEQ--VFHYEGGIVSFVKYLNRNKDVLHE 238 Query: 246 SPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++ +++A+++ND Y ENVL F NNI ++GGTHL G +SALTR I Y Sbjct: 239 DPIYMRAASQEGEWEVEVALQYNDSYAENVLSFANNINTQEGGTHLVGFKSALTRSINDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K K+ ++ GDD REG T+V+S+K+ +P+F QTK KL +SE+R +VES V D Sbjct: 299 ARKMNLLKEQDPNLSGDDVREGLTAVISVKLVNPQFEGQTKTKLGNSEMRGIVESVVGDA 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 ++ +LEE+P A++IV+K + A+ R+AAR+AR+L RRK LD SLPGKLADC E+DP+ Sbjct: 359 MNRFLEENPSVARVIVEKAISAARAREAARKARELVRRKNALDRTSLPGKLADCREKDPR 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 EL+LVEGDSAGGSAKQGR QAILPLRGKILNVE+AR DK+L ++EI +ITALGT Sbjct: 419 LCELYLVEGDSAGGSAKQGRDPRFQAILPLRGKILNVEKARLDKILGNEEIRAMITALGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FDI KLRYHKII+M DADVDGAHIRTLLLTF +R M LI G +YI +PPLY Sbjct: 479 GIG-DDFDIEKLRYHKIILMADADVDGAHIRTLLLTFLYRYMRPLIEAGMVYIAQPPLYQ 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSE--EIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 +++GK + Y +E L+ L G ++ + L + ++ Sbjct: 538 VSKGKEVYYAYSDEELKAILERLGKDRDKAEVKRFKGLGEMNADQLWDT-----TMNPKT 592 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + IE I + E + + A N Sbjct: 593 RTILKVNLEDAIEADEIFTILMGEKVEPRRQFIFEHAAEVRNL 635 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IG--RKGISM 736 + +F +Y R + + L + G ++ L I +G R + Sbjct: 510 LLLTFLYRYMRPLIEAGMVYIAQPPLYQVSKGKEVYYAYSDEELKAILERLGKDRDKAEV 569 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 +R+KGLGEMNA QLW+TT+NP TR++L+V + DA +AD++F+ LMG++VEPRR+FI E++ Sbjct: 570 KRFKGLGEMNADQLWDTTMNPKTRTILKVNLEDAIEADEIFTILMGEKVEPRRQFIFEHA 629 Query: 797 LPS-ALDI 803 LDI Sbjct: 630 AEVRNLDI 637 >gi|72388587|gb|AAZ67937.1| DNA gyrase subunit B [Psychrobacter immobilis] Length = 747 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 325/741 (43%), Positives = 451/741 (60%), Gaps = 49/741 (6%) Query: 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92 G SGLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG Sbjct: 1 GPLSXMSGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEG 60 Query: 93 ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 +SAA+VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ + Sbjct: 61 VSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTD 120 Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 G+ D + + TGT++ F PSSD+F+ F YD L RLRELSFLNS V+I L D Sbjct: 121 GVPDADIQQ-MEPTDKTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTD 179 Query: 213 KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +R + E +KGG+ FVSY++ K + + + D IS+++A++W D Y+E Sbjct: 180 ERIDKRHE--FEHKGGLSEFVSYINAGKDGINEVFHFVSEQDDGISVEVALQWTDTYNEK 237 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V CFTNNIPQ+DGGTHLSG RSALTR + +Y+++ KK+K GDD REG T+++S+ Sbjct: 238 VFCFTNNIPQRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSV 297 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+PDP+FSSQTK+KLVSSEV+S VES ++D + +L+E+P K I K++DA+ RDAA Sbjct: 298 KVPDPKFSSQTKDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKAIAGKIIDAARARDAA 357 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILP Sbjct: 358 RKAREMTRRKTTLDIAGLPGKLADCQEKDPAFSELYIVEGDSAGGSAKQGRSRKTQAILP 417 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 L+GKILNVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+H Sbjct: 418 LKGKILNVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSH 477 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 IRTLLLTFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 478 IRTLLLTFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTK 537 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--I 630 I+ L ++D + + ++ + + + + Sbjct: 538 LHISADAPAITGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLSTDMTYDFPA 597 Query: 631 NVSLASKLANRLNF----IAEKSE--------------------------KSWHGSINNS 660 + + +L ++ + E ++ G+ ++S Sbjct: 598 MQAWKEAMQAQLEHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMKPVVETVEGAASDS 657 Query: 661 D---------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + + + ++L+ S I S S + Sbjct: 658 EALSAKAQWLPRITVYVHQLAHHYLLDASFINSGEYSKLLRLSAEWNTLLAEDAFIRREA 717 Query: 712 -----DKIKITGPCSLLDTIF 727 I + L + Sbjct: 718 TTGTTKDIPVRDFDYLWQQMM 738 >gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219] gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219] Length = 634 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 298/589 (50%), Positives = 405/589 (68%), Gaps = 7/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD YDA IQ+L+GL+AV+KRPSMYIG D GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSDR---DVYDATHIQVLEGLEAVRKRPSMYIGSID-GRGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V++N DGS TV D+GRGIPTD+H + SA EV+MT LHAGGKF++ SYKVSGGL Sbjct: 57 CTSIDVSINRDGSVTVRDDGRGIPTDIHSKYKKSALEVVMTILHAGGKFDKSSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W + + R G I+ ++ G + ++ G TGT +TF P +D Sbjct: 117 HGVGVSVVNALSEWNDVEVHRNGKIFYQRYVRGKPLDDVIEKGDTE-STGTSMTFKPDTD 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF DFN++TL RLREL+FLN ++I + DKRS EP + Y GGI +FV YL++ + Sbjct: 176 IFETVDFNFETLVTRLRELAFLNRGIKIVITDKRSDEPLQEVFEYDGGIVSFVEYLNKSR 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + PI + +++ +++AM++ D Y E V F NNI +GGTHL+G +SALTR Sbjct: 236 NVLHEQPIYFEREKEDTRVEIAMQYTDSYGEYVYSFANNINTHEGGTHLAGFKSALTRVA 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + + K + GDD REG ++S+K+ DP+F QTK KL +SE++ +V+S V Sbjct: 296 NDYAKSNN-LAKGDIKLSGDDIREGLAGIISVKLMDPQFEGQTKTKLGNSELKGIVDSMV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++GLS ++EE+P A I++K +DA R+AA++AR+LTRRK L++++LPGKLADCSE+ Sbjct: 355 SEGLSEFMEENPKIASAILQKAMDARRAREAAKKARELTRRKSALEVSTLPGKLADCSEK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAK GR R QAILP RGKILNVE++R ++L + EI +LITA Sbjct: 415 DPSVSEIYLVEGDSAGGSAKMGRDRRFQAILPFRGKILNVEKSRLARILKNNEILSLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D +D+ K RYHK++IMTDADVDGAHIRTL+LTFFFR M LI G++YI +PP Sbjct: 475 MGTGIG-DEYDLTKARYHKVVIMTDADVDGAHIRTLMLTFFFRYMTPLIDAGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GK+ ++ E + + G ++ + L Sbjct: 534 LYSIKKGKNQRFAYTEREKDRIIEEIGEKGVSIQRYKGLGEMNPDQLWE 582 Score = 186 bits (472), Expect = 2e-44, Method: Composition-based stats. Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 2/103 (1%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I G + D I G KG+S+QRYKGLGEMN QLWETT+NP TR+ Sbjct: 532 PPLYSIKKGKNQRFAYTEREKDRIIEEIGEKGVSIQRYKGLGEMNPDQLWETTMNPQTRT 591 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +L+V + DA AD++FS LMGDEV PRR+FIQE++ LD+ Sbjct: 592 ILQVTMEDAVAADEMFSVLMGDEVAPRRKFIQEHAKDVINLDV 634 >gi|3695371|gb|AAC62775.1| DNA gyrase subunit B [Campylobacter jejuni] Length = 685 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 305/715 (42%), Positives = 434/715 (60%), Gaps = 39/715 (5%) Query: 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99 GLHHMIYEV+DN+IDE++ G+ D I V + +GSC VSDNGRGIP D+H E + V+ Sbjct: 5 GLHHMIYEVVDNSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVV 64 Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159 +T LHAGGKF++ +YKVSGGLHGVGVSVVNALS L ++R G IY F G + + Sbjct: 65 LTVLHAGGKFDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEF 124 Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 V G + TGT + F P IF V +F+Y+ L R REL++LN + I+ D R + Sbjct: 125 GVIGKSK-KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGK-- 181 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 + +KGGI FV +D +KK + I +++++++A+ +ND Y EN+L F NN Sbjct: 182 HESFHFKGGISQFV--IDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNN 239 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I DGGTH +G R LTR I++Y+E + +++ + G+D REG +V+S+K+P+P+F Sbjct: 240 IKTPDGGTHEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQF 299 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL S+ VR +V + L+ + EE+P+EAK I+ K L A+ R+AA++AR+LT Sbjct: 300 EGQTKGKLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELT 359 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 R+K L + +LPGKLADC +DP +SE++LVEGDSAGGSAKQGR R QAILPLRGKILN Sbjct: 360 RKKESLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILN 419 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR DK+L S++I +ITA G GIG+D FD++KLRYHKIIIMTDADVDG+HI+TLLLT Sbjct: 420 VEKARLDKILKSEQIPNMITAFGCGIGED-FDLSKLRYHKIIIMTDADVDGSHIQTLLLT 478 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFFR M L+ NG +Y+ +PPLY + K Y+KDE++L +YLI + Sbjct: 479 FFFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNY------ 532 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD-----KTFIEQAVISGVFNCESDQEINVSL 634 I NDL++++ ++KD + + IE + + N E I L Sbjct: 533 EGIGMNDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFL 592 Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 ++ N LN ++E + G++E V+ + Sbjct: 593 ETQGHNILNHYINENEIR----------AFVQTQNGLEE-LVINEELFTHPLYEEASYIF 641 Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 ++I++ L +L+ + + +KG ++QRYKGLGEMN Q Sbjct: 642 DKIKDIGLEFD-----------KDILEVLEDVETNAKKGATIQRYKGLGEMNPEQ 685 >gi|307265429|ref|ZP_07546985.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919543|gb|EFN49761.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 633 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 308/584 (52%), Positives = 409/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G IY + G+ L V G T +TF P +IF Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERHGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y EN+ F NNI ++GGTHL G ++ALT+ I Y Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTG+ Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGV 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHKI+IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY IT Sbjct: 479 GND-FDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDRELDKILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDKILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|326390355|ref|ZP_08211914.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993632|gb|EGD52065.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW 200] Length = 633 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 307/584 (52%), Positives = 410/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G IY + G+ L V G T +TF P +IF Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQIYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERHGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y+EN+ F NNI ++GGTHL G ++ALT+ I Y Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYNENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTG+ Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGV 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHKI+IMTDADVDG+HIRTLLLTFF+R M LI NG ++I +PPLY IT Sbjct: 479 GND-FDISKLRYHKIVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVFIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDRELDKILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGVGNDFDISKLRYHKIVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVFIAQPPLYKITKGKKVYYAYSDRELDKILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++ + Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 653 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 284/604 (47%), Positives = 385/604 (63%), Gaps = 17/604 (2%) Query: 1 MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD N Y A SIQ+L+GL+AV+KRP+MYIGD GE GLHH++YEV+DN+IDE+ Sbjct: 1 MSDETTNKALNKEYGASSIQVLEGLEAVRKRPAMYIGDV-GEKGLHHLVYEVVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY I+VT+N D S TV D+GRGIP D+H++E SA EV+MT LHAGGKF++ SYKV Sbjct: 60 LAGYCKNISVTINKDNSVTVKDDGRGIPVDIHEKEKKSALEVVMTVLHAGGKFDKGSYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVS VNALS +LK + R G Y + G+ + G ++TGT +TF Sbjct: 120 SGGLHGVGVSCVNALSDYLKAEVCRNGKRYVQEYSRGVPLGEVKEVG-TSSETGTTITFH 178 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAF 232 P DIF + Y L R+REL+FLN+ +++++ D + + + + G+ F Sbjct: 179 PDKDIFIDIHYKYSILVKRMRELAFLNAGIRLTITDLRSEEEGGANKTEEFYSEQGLREF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V Y+D ++PL+ I I + +++AM +N Y EN+ + NNI +GGTH++G Sbjct: 239 VKYIDSTREPLINDVIYIDTDKYGTPVEVAMMYNTSYTENLHSYVNNINTIEGGTHVTGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALTR + Y + + +K K + DD REG T+V+S+K+ +P+F QTK KL + EV Sbjct: 299 RTALTRTLKKYADDNKLLEKTKVEISSDDFREGITAVISVKVAEPQFEGQTKTKLGNDEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + +V+ V + L+ +LEEHP EAK IV+K++ A+ R+AAR+AR+L +RK L LPG Sbjct: 359 KGMVDRAVGEALNVFLEEHPKEAKTIVEKIILAATARNAARKARELVQRKSPLSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS RD E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+A K S+ Sbjct: 419 KLADCSSRDASLCEIFLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAMRHKAFESE 478 Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 E+ + TALG IG + KLRYHK++IMTDADVDG+HI TL+LTFFFR M L Sbjct: 479 EVRNIYTALGVTIGTEEDSQALNIEKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKEL 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKN 585 I G +YI PPLY +GK +Y EE ++ +E + G ++ Sbjct: 539 IEQGHVYIATPPLYLCKKGKVQEYCWTEEQRLRFIQQYGDGKESGITQQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 11/203 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ F E + I +L + + A EK + + Sbjct: 457 LPLRGKILNVEKAMRHKAFESEEVRNIYTALGVTIGTEEDSQALNIEKLRYHK------V 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSL 722 V V + F F + I + L L G + Sbjct: 511 VIMTDADVDGSHIATLILTFFFRYMKELIEQGHVY-IATPPLYLCKKGKVQEYCWTEEQR 569 Query: 723 LDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L I G GI+ QRYKGLGEMN QLWETT+NP+ R+L ++ I +A++AD +FS Sbjct: 570 LRFIQQYGDGKESGITQQRYKGLGEMNPEQLWETTMNPENRTLRQITIENAAEADYVFSM 629 Query: 780 LMGDEVEPRREFIQENSLPSALD 802 LMGD+V PRR+FI+EN+ + +D Sbjct: 630 LMGDDVAPRRQFIEENATYANID 652 >gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE] gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE] Length = 635 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 309/589 (52%), Positives = 408/589 (69%), Gaps = 6/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ I +YDA SIQ+L+GL+AV+KRPSMYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSNEIPAQAYDASSIQVLEGLEAVRKRPSMYIGSTDY-RGLHHLVYEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N DGS TVSD+GRGIP ++H++ A E++MT LHAGGKF+ +YKVSGGL Sbjct: 60 CHNIEVTINKDGSVTVSDDGRGIPVEMHEKYKRPALEIVMTMLHAGGKFDNLTYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ ++R ++ ++ G + + TGT F P Sbjct: 120 HGVGVSVVNALSEWLRVEVRRNEKLWVQEYVRGKPKDEVHEI-GTAIGTGTTTIFKPDPT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F Y+ L +RLREL+FLN V+I+L+D RS T Y+GGI FV YL+ K Sbjct: 179 IFETTEFKYEILVNRLRELAFLNKGVKITLMDARSG--VSDTFHYEGGIVQFVQYLNEGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + I + +D +++AM++NDGY E VL F NNI +GGTHLSG RSALTR Sbjct: 237 TPVNEKVIYFEKQKDTTDVEIAMQYNDGYSEIVLAFANNIHTTEGGTHLSGFRSALTRSF 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K+ K G+D REG T+++S+K+ +P+F QTK KL +S+V+ +V S V Sbjct: 297 NDYAKKN-SLLKGDMQFSGEDIREGLTAIISVKLTNPQFEGQTKTKLGNSDVQGIVNSLV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GL +LEE+P EA+ I+ K + A R+AAR+AR+LTRRK VL+ +LPGKLADCSER Sbjct: 356 GEGLDDFLEENPSEARKIIDKAVQAFQAREAARKARELTRRKSVLENTTLPGKLADCSER 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K EL+LVEGDSAGGSAKQGR+R QAILPLRGKILNVE+AR D++L+S+EI LITA Sbjct: 416 DPSKCELYLVEGDSAGGSAKQGRNRLFQAILPLRGKILNVEKARLDRVLTSEEIRALITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GT +G+D F I+K RYHKII+MTDADVDGAHIRTLLLTFFFR M LI G++YI +PP Sbjct: 476 MGTSVGED-FVIDKARYHKIILMTDADVDGAHIRTLLLTFFFRYMKPLIEAGYVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 L+ +GK +Y +EE+L L + G ++ L + Sbjct: 535 LFRAKKGKEERYAYNEEALAGILEEMGRNGVAVNRYKGLGEMNPEQLWS 583 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V + ++ + + + + ++ V + Sbjct: 452 ILNVEKARLDRVLTSEEIRALITAMGTSVGEDFVIDKARYHKIILMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + ++ +L + +GR G+++ RYK Sbjct: 512 LTFFFRYMKPLIEAGYVYIAQPPLFRAKKGKEERYAYNEEALAGILEEMGRNGVAVNRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLW TT++P TR++L+V + DA +AD F+ LMGD+VEPRR+FI +N+ Sbjct: 572 GLGEMNPEQLWSTTMDPQTRTVLQVTMEDAVEADRTFTLLMGDKVEPRRDFIVQNAKFVR 631 Query: 800 ALDI 803 LD+ Sbjct: 632 NLDV 635 >gi|284047394|ref|YP_003397733.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731] gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731] Length = 646 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 311/599 (51%), Positives = 405/599 (67%), Gaps = 15/599 (2%) Query: 1 MSDNIQN--------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 M+ Q Y A+ IQ+L+GL+AV+KRPSMYIG GLHH++YEV+DN+ Sbjct: 1 MAKKKQTIEEEIAVHGDYGAEQIQVLEGLEAVRKRPSMYIGSIS-GRGLHHLVYEVIDNS 59 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L GY D I V ++ D S TV+DNGRGIP ++HK G A EV+MT LHAGGKF Sbjct: 60 IDEALAGYCDHIRVIIHPDNSITVTDNGRGIPVEMHKV-GKPAIEVVMTVLHAGGKFGDG 118 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGT 171 YKVSGGLHGVGVS VNALS + + +K+ G IY + F G PL V G N+TGT Sbjct: 119 GYKVSGGLHGVGVSCVNALSKKMVVEVKKNGKIYGIEFSKGKTTRPLYVKGECPENETGT 178 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 VTF P IF+ ++YDTL+HR+REL+FLN V+I L D+RS + Y+GGI + Sbjct: 179 SVTFWPDDTIFTETVYSYDTLKHRIRELAFLNKGVKIQLTDERSGQD--EVFHYEGGIVS 236 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV ++++ K+PL PI ++G R + +++AM++ D Y EN+ F NNI ++GGTHL+G Sbjct: 237 FVEFVNKGKEPLHAKPIYVEGERQDTIVEVAMQYTDAYTENIYTFVNNINTEEGGTHLAG 296 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 L+ ALTR I Y K+ K ++ ++ GDD REG T V+S+K+ +P+F QTK KL +SE Sbjct: 297 LKQALTRCINDYARKNSLLKDNEDNLSGDDVREGLTCVMSLKVREPQFEGQTKTKLGNSE 356 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +V++ V + L+ + EE+ AK IV+K + AS R AAR+ARDLTRRK L+++SLP Sbjct: 357 VRGIVDNMVTEALTEYFEENAPVAKKIVEKAIMASRARSAARKARDLTRRKSALEVSSLP 416 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS ++ ++E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DKML+S Sbjct: 417 GKLADCSSKNAAETEIYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKMLNS 476 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 QEI +ITA G GIG D FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M LI N Sbjct: 477 QEIRAMITAFGCGIG-DEFDIAKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIQN 535 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589 G ++I +PPLY I GK Y +E L+ L + G ++ L Sbjct: 536 GNVFIAQPPLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPYVQRYKGLGEMNPEQLWE 594 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 4/126 (3%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKG-ISMQ 737 + +F +Y + + N L LI G K L + +GR+ +Q Sbjct: 520 LLLTFFYRYMKPLIQNGNVFIAQPPLYLIRTGKKHTYAYSDEELQRKLDEVGRQNNPYVQ 579 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT++P R++L+V++ DA+ AD +FS LMGD+VEPRR+FI+EN+ Sbjct: 580 RYKGLGEMNPEQLWETTMDPSKRTVLQVQLEDAATADSVFSVLMGDKVEPRRQFIEENAG 639 Query: 798 PS-ALD 802 LD Sbjct: 640 KVTNLD 645 >gi|81251055|gb|ABB69863.1| DNA gyrase subunit B [Nitrosospira sp. KAN8] Length = 555 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 332/546 (60%), Positives = 423/546 (77%), Gaps = 5/546 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y +DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L GY D I Sbjct: 13 KSSTDYGSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCDEI 72 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKF+ SYKVSGGLHG Sbjct: 73 SVIIHPDNSVTVQDNGRGIPTGIKQDDELKRSAAEIVMTELHAGGKFDSDSYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WL+L I+R+ ++++ F G+ PL VTG GTEV FL S +IF Sbjct: 133 VGVSVVNALSEWLRLSIRRDEKVHQIEFRMGVPVTPLAVTGKTE-RRGTEVHFLASKEIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 192 GDIEYHYDIFAKRLRELSFLNNGVKIHLVDQRNAKE--ETFAFVGGVKSFVEYVNRTKSV 249 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G +D I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + + Sbjct: 250 LHPNIFYAAGEKDRIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTLNN 309 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V+ Sbjct: 310 YIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIVSL 369 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+DP Sbjct: 370 KLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEKDP 429 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITALG Sbjct: 430 ALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITALG 489 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PPLY Sbjct: 490 TGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPPLY 549 Query: 543 GITRGK 548 I GK Sbjct: 550 KIKHGK 555 >gi|81251047|gb|ABB69857.1| DNA gyrase subunit B [Nitrosospira sp. 9SS1] Length = 555 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 335/548 (61%), Positives = 425/548 (77%), Gaps = 5/548 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ YD+DSI+ILKGLDAV+KRP MYIGDT +GLHHM++EVLDNAIDE+L GY D Sbjct: 11 KSKGSTDYDSDSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVLDNAIDEALAGYCD 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I+V ++ D S TV DNGRGIPT + + E SAAE++MT LHAGGKFN SYKVSGGL Sbjct: 71 EISVIIHPDNSITVQDNGRGIPTGIKQDDEFKRSAAEIVMTELHAGGKFNSDSYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL+L I+R+G I+++ F G+ PL TG GTEV FL S + Sbjct: 131 HGVGVSVVNALSEWLRLSIRRDGKIHQIEFRMGVPVAPLAATGKTE-RRGTEVHFLASKE 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++YD RLRELSFLN+ V+I L+D+R+ + T + GG+++FV Y++R K Sbjct: 190 IFGDIEYHYDIFAKRLRELSFLNNGVKIHLLDQRNAKE--ETFAFVGGVKSFVEYVNRTK 247 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L G +D+I ++++M+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+TR + Sbjct: 248 SVLHPHIFYAAGEKDHIVVEVSMQWNDSYTEQVLCFTNNIPQKDGGTHLTGLRAAMTRTL 307 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+EKS +KK K GDD REG + VLS+K+ +P+FSSQTKEKLVSSEVR VVE V Sbjct: 308 NNYIEKSDLAKKAKIETSGDDMREGLSCVLSVKLFEPKFSSQTKEKLVSSEVRPVVEEIV 367 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L EHP++AKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC E+ Sbjct: 368 SLKLAEFLMEHPVDAKIICGKIIEAARAREAARKARELTRRKGVLDGMGLPGKLADCQEK 427 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE+ARFDK++SSQEI +LITA Sbjct: 428 DPALSELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKARFDKLISSQEIASLITA 487 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G ++I +PP Sbjct: 488 LGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIFIAQPP 547 Query: 541 LYGITRGK 548 LY I GK Sbjct: 548 LYKIKHGK 555 >gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF] Length = 640 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 407/591 (68%), Gaps = 5/591 (0%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M +N + +YD IQ+L+GL+AV+KRP MYIG TD E GLHH+++EV+DN+IDE++ Sbjct: 1 MEENKFVNEQNYDESQIQVLEGLEAVRKRPGMYIGSTD-ERGLHHLVHEVVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I + L V+DNGRGIP H + EVIMT LHAGGKF+ SYKVSG Sbjct: 60 GYCDDIRIKLEPGNKVRVTDNGRGIPVKDHPKIKKPTLEVIMTYLHAGGKFSNDSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVN LS W+++++ R+G +Y+ + G + G + + GTE+ FLP Sbjct: 120 GLHGVGISVVNGLSKWIRVKVYRDGKVYQQEYEKGYPKTEIKEIGES-DKRGTEIIFLPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF +F+Y L++RL++L+FLN V I++ D+R E +E Y+GGI++FV YL+ Sbjct: 179 EEIFETVEFDYQVLRNRLQQLAFLNRGVSITISDEREDEFKEEHFKYEGGIKSFVEYLNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K L P+ I+G ++ +++A+++NDGY E + + NNI +GGTH SG + +LTR Sbjct: 239 NKTTLFTPPVYIEGEQEGCKLEVAIQYNDGYQEMIHSYANNINTHEGGTHESGFKISLTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y + K +++ G+D REG T+++S+K+ DP+F QTK KL +SEVR +VE Sbjct: 299 TVNDYARRHNLLKNGDKNLTGEDIREGITAIISVKVEDPQFEGQTKTKLGNSEVRRIVEG 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L ++LEE+P K IV K ++AS R+AAR+A++LTRRK L++ +LPGKLADC+ Sbjct: 359 IVSEHLESYLEENPAVGKKIVNKAINASRAREAARKAKELTRRKNALEVTALPGKLADCT 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D KSEL+LVEGDSAGGSAKQGR RE QAILPLRGKILNVE+ARFDK+L+++EI T+I Sbjct: 419 TKDASKSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARFDKILANEEIKTII 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+GTGIG++ FDI+K RY +IIIMTDADVDGAHIRTLLLTFF+R M LI +G++YI + Sbjct: 479 TAIGTGIGEE-FDISKARYQRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEHGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + Y ++ L++ L G ++ L Sbjct: 538 PPLYMVKKKGKHYYTFNDHELDNLLEEIGKEGISLQRYKGLGEMNPTQLWE 588 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + + S ++ V + Sbjct: 457 ILNVEKARFDKILANEEIKTIITAIGTGIGEEFDISKARYQRIIIMTDADVDGAHIRTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + G L + + IG++GIS+QRYK Sbjct: 517 LTFFYRYMRPLIEHGYVYIAQPPLYMVKKKGKHYYTFNDHELDNLLEEIGKEGISLQRYK 576 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN +QLWETT+NP++R++L V + DA +AD +F+ LMG++V PRR+FI+EN+ Sbjct: 577 GLGEMNPTQLWETTMNPESRTVLNVNLQDAIEADKIFTVLMGEKVSPRRKFIEENARDVR 636 Query: 800 ALDI 803 LD+ Sbjct: 637 NLDV 640 >gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1] gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1] Length = 639 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 292/593 (49%), Positives = 395/593 (66%), Gaps = 10/593 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+SY A IQ+L+GL+AV++RP MY+G TD LHH++YEV+DN+IDE+L G Sbjct: 1 MATPV-NTSYGAKDIQVLEGLEAVRRRPGMYVGGTD-LKALHHLVYEVVDNSIDEALAGA 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S TV DNGRGIP D+H E+ SA EV+MT LHAGGKF SYKVSGGL Sbjct: 59 CDHIQVTIHPDSSVTVEDNGRGIPVDIHPEKQKSALEVVMTVLHAGGKFGSGSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179 HGVGVS VNALS W ++ ++R+G ++ + G+ P+ V G + TGT+ TF Sbjct: 119 HGVGVSAVNALSEWCEVEVRRDGKVHFQRYERGVPVEPVKVIGKCKPNETGTKTTFRFDP 178 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF D+ +DTL R RE++F+ V I LID+R+ +GGI +FV YL+R Sbjct: 179 TIFKGDLDYKFDTLVQRFREMAFVTRKVTIRLIDERASREMSFYF--EGGITSFVRYLNR 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +++ L + + + + I+ A+++ D Y E+V F N I DGGTHL+GLR+A+TR Sbjct: 237 NREVLHP-VVYAEKEVEGVGIEAAIQYTDAYAESVYSFANTINTIDGGTHLTGLRAAITR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y ++ K + GDD REG T+++S+K PDP+F SQTK KL++ EV++ V+ Sbjct: 296 VINDYARRNNFLKDGDPNFSGDDTREGLTAIVSVKHPDPQFESQTKVKLMNPEVQTYVQQ 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + S +LEE+P AK I++K L ++ RDAAR+ARDL RK L+ +LPGKLADCS Sbjct: 356 VVGEAFSTFLEENPQAAKAIIQKCLTSARARDAARKARDLVIRKSTLESLTLPGKLADCS 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP K+EL++VEGDSAGGSAKQGR R QA+LPLRGKILN ERAR DK+LS+ E+ LI Sbjct: 416 ERDPSKTELYIVEGDSAGGSAKQGRDRHFQAVLPLRGKILNTERARLDKILSNNEVKALI 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +ALGTGIG DSFD++ LRY ++IIMTDADVDG+HIRTLLLTFFFR M LI +G L+I + Sbjct: 476 SALGTGIG-DSFDLSGLRYGRVIIMTDADVDGSHIRTLLLTFFFRYMLPLIEDGHLFIAQ 534 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRN 589 PPLY I ++Y + + L + + G ++ L Sbjct: 535 PPLYRIAYKNQVRYAYTDADRDRILKELGITPEKASIQRYKGLGEMNPTQLWE 587 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEMN +QLWETT+NP+ R+LL V + DA+ AD F LMG V PR +FIQ Sbjct: 570 SIQRYKGLGEMNPTQLWETTMNPENRTLLMVTVEDAAAADRTFDMLMGAAVPPRTKFIQT 629 Query: 795 NSLPS-ALDI 803 ++ LDI Sbjct: 630 HARDVRNLDI 639 >gi|312878944|ref|ZP_07738744.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260] gi|310782235|gb|EFQ22633.1| DNA gyrase subunit B [Aminomonas paucivorans DSM 12260] Length = 635 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 292/599 (48%), Positives = 398/599 (66%), Gaps = 3/599 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 S Y A IQ+L+GL+AV+KRP MYIGD G GLHH++YEV+DNAIDE++ G D Sbjct: 2 EAPASQYTAKDIQVLEGLEAVRKRPGMYIGD-QGPRGLHHLVYEVVDNAIDEAMAGVCDT 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + VT++ +GS +V DNGRGIPT++H G SAAEV++T LHAG KF++K+Y+VSGGLHGV Sbjct: 61 VYVTIHPEGSVSVVDNGRGIPTEIHAATGKSAAEVVLTVLHAGAKFDKKAYQVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS WL++ I R G + F G L TG + GT+V F+P +IFS Sbjct: 121 GVSVVNALSEWLEVTIWRNGREHRQRFERGAAVTELQ-TGEDTDRRGTKVQFMPDEEIFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF+ +TL RLREL+FLN + I D R E ++GGI +F YL+R K+ L Sbjct: 180 TLDFSSETLLGRLRELAFLNPGITIHFQDLRQDPILEKHYHFEGGIASFAEYLNRGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + P+ ++G +DN+ +D+A+++ND Y E V F N I +GGTH+SG R+ALTR + Sbjct: 240 FKPPVVVRGEKDNVVVDVALQYNDTYLERVFAFANLINTVEGGTHVSGFRTALTRAVNDQ 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K K + GDD +EG T+V+S+K+ +P+F QTK KL + +V+ +V+S V +G Sbjct: 300 ARKEKILKDKDPNFTGDDLKEGLTAVVSVKLLEPQFEGQTKTKLGNGDVKGIVDSVVYEG 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L A LEE K +V K + A R+AA++ARDL RRK + LPGKLADCS R+P+ Sbjct: 360 LKALLEERADILKPVVDKAVRARQAREAAKKARDLVRRKSAMSGLDLPGKLADCSNRNPE 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEG+SAGGSAK GR+R QAILPLRGKILNVERAR DK+LS++ + T+I ALG Sbjct: 420 ECEVYIVEGESAGGSAKMGRNRSFQAILPLRGKILNVERARLDKILSNEMVRTIIQALGC 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G D FD KLRYHKI +M DADVDGAHIRTLLLT FFR MP +I NG LY+ +PPLY Sbjct: 480 GVG-DDFDYAKLRYHKIFLMADADVDGAHIRTLLLTLFFRYMPQIIENGHLYVAQPPLYR 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + GK++ Y ++ L+ S ++ + + + +D A +I K ++ Sbjct: 539 VQEGKTVHYCFSDKELKTLTDKASKRVSVQRYKGLGEMNPEQLWETTMDPANRIIKRVE 597 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + + E + I +L + + ++ + K + + + D Sbjct: 447 LPLRGKILNVERARLDKILSNEMVRTIIQALGCGVGDDFDYAKLRYHKIFLMADADVDGA 506 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIK-ITGPCS 721 R + + +Y +I N L + G + Sbjct: 507 HIRT-------------LLLTLFFRYMPQIIENGHLYVAQPPLYRVQEGKTVHYCFSDKE 553 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L T+ K +S+QRYKGLGEMN QLWETT++P R + RV++ DA AD+LF LM Sbjct: 554 -LKTLTDKASKRVSVQRYKGLGEMNPEQLWETTMDPANRIIKRVEVDDAVTADELFGILM 612 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPRREFI+ ++ LDI Sbjct: 613 GDAVEPRREFIETHAKEVRNLDI 635 >gi|167036441|ref|YP_001664019.1| DNA gyrase subunit B [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751447|ref|ZP_05492325.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320114866|ref|YP_004185025.1| DNA topoisomerase IV subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855275|gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749666|gb|EEU62692.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319927957|gb|ADV78642.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 633 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 307/584 (52%), Positives = 408/584 (69%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVRKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G IY + G+ L V G T +TF P +IF Sbjct: 122 SVVNALSEKLEVIVKQHGKIYRQRYERGVPKTDLEVIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFDYDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y EN+ F NNI ++GGTHL G ++ALT+ I Y Sbjct: 239 EPIYMEAKNSDYEVEVCMQYNDSYTENIFSFANNIDTREGGTHLVGFKAALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVTEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTGI Sbjct: 419 ELFLVEGDSAGGSAKSGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY IT Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 184 bits (468), Expect = 5e-44, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDRILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++++ Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKHAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|72388573|gb|AAZ67930.1| DNA gyrase subunit B [Psychrobacter okhotskensis] Length = 741 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 327/734 (44%), Positives = 453/734 (61%), Gaps = 49/734 (6%) Query: 40 GLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVI 99 GLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VI Sbjct: 5 GLHHMVFEVVDNSIDEALAGHCDQIDIVIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVI 64 Query: 100 MTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL 159 MT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ +G+ D + Sbjct: 65 MTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADI 124 Query: 160 VVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR 219 A + TGT++ F PS+D+F+ F YD L RLRELSFLNS V+I L D+R + Sbjct: 125 QQ-MEATDKTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRH 183 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 E +KGG+ FVSY++ K + + D IS+++A++W D Y+E VLCFTNN Sbjct: 184 E--FEHKGGLSEFVSYINAGKDGVNEVFHFDSEQDDGISVEVALQWTDTYNEKVLCFTNN 241 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IPQ+DGGTHLSG RSALTR + SY+++ KK+K + GDD REG T+++S+K+PDP+F Sbjct: 242 IPQRDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVTATGDDAREGLTAIVSVKVPDPKF 301 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 SSQTK+KLVSSEV+S VES ++D + +L E+P +K I K++DA+ RDAAR+AR++T Sbjct: 302 SSQTKDKLVSSEVKSAVESAMHDKFNDFLLENPTASKAIANKIIDAARARDAARKAREMT 361 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILN Sbjct: 362 RRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILN 421 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLT Sbjct: 422 VERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLT 481 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 482 FFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADA 541 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASK 637 I+ L ++D + + ++ + + + D+ + Sbjct: 542 PAITGQALETLLNDYNQTQLIKARLQIRFPAVILDALTHTPKLSTDMTYDKSAMQAWQEA 601 Query: 638 LANRLNF----IAEKSE--------------------------KSWHGSINNSD------ 661 + +L ++ + E + G++++S+ Sbjct: 602 MQTQLEHFGSDLSPEIELVNIHAPQPKNMDAAAADLLGMRPAVEIADGTVSDSEALSAKA 661 Query: 662 ---ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DK 713 + + ++L+ S I S S + K Sbjct: 662 QWLPRITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLEEEAFIRREATAGTTKK 721 Query: 714 IKITGPCSLLDTIF 727 I + L + Sbjct: 722 IPVRDFDYLWQQMM 735 >gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro] gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro] Length = 633 Score = 627 bits (1617), Expect = e-177, Method: Composition-based stats. Identities = 295/589 (50%), Positives = 400/589 (67%), Gaps = 8/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD YDA IQ+L+GL+AV+KRPSMYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSDK---QVYDASHIQVLEGLEAVRKRPSMYIGSTDS-RGLHHLVYEVVDNSIDEALAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 II VT+N DGS TV DNGRGIP D H SA EV+MT LHAGGKF++ +YKVSGGL Sbjct: 57 CTIINVTINPDGSVTVLDNGRGIPVDPHPFHKKSALEVVMTVLHAGGKFDKNTYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVN LS WL++ + REG Y + G ++ G++ T+ TF P Sbjct: 117 HGVGVSVVNGLSEWLEVEVAREGKKYFQRYDRGKPKADVLEIGTSETTG-TKTTFKPDEK 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF DF+Y+ L +RLREL+FLN + ISL+D R+P+ + T Y+GGI FV YL+ K Sbjct: 176 IFETLDFDYEILSNRLRELAFLNRGLTISLMDLRTPDGQAETFTYEGGIVEFVKYLNNKK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL PI + RD++ +++AM++ Y ENV F NNI +GGTH+ G ++ALTR Sbjct: 236 QPLHA-PIYFERQRDDMVVEIAMQYTSSYAENVYSFANNINTHEGGTHIIGFKTALTRVA 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y++ + K+ + GDD REG T+++S+K+ +P+F QTK +L +S+V+ +V+S V Sbjct: 295 NDYIKANK-LSKEDIKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSDVKGIVDSLV 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 DGL+ + EE+P A +I++K L A R+AA++AR+LTRRK L++++LPGKLADCSE+ Sbjct: 354 TDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKNALEVSTLPGKLADCSEK 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P E+++VEG+SAGGSAKQGR R QAILPLRGKILNVE++R K+L ++EI +LITA Sbjct: 414 NPAACEIYIVEGNSAGGSAKQGRDRSFQAILPLRGKILNVEKSRLAKILKNEEIISLITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGI + F + RYHK+IIMTDADVDG HIRTLLLT FFR M LI G++YI +PP Sbjct: 474 IGTGI-SEDFTLESARYHKVIIMTDADVDGEHIRTLLLTLFFRYMRPLIDEGYVYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GK+ Y+ + LE G ++ L Sbjct: 533 LYRIKKGKAEYYIHSDRELEAKKKELGEKGLGIQRYKGLGEMNPGQLWE 581 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + I + + ++ V + + Sbjct: 450 ILNVEKSRLAKILKNEEIISLITAIGTGISEDFTLESARYHKVIIMTDADVDGEHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F I + + + + I L +G KG+ +QRYK Sbjct: 510 LTLFFRYMRPLIDEGYVYIAQPPLYRIKKGKAEYYIHSDRELEAKKKELGEKGLGIQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-S 799 GLGEMN QLWETT+NP++R LL+V + DA +AD++F LMGDEVEPRR FI+ ++ Sbjct: 570 GLGEMNPGQLWETTMNPESRILLQVTLEDAIRADEIFRVLMGDEVEPRRNFIEAHAKEVV 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|21675071|ref|NP_663136.1| DNA gyrase subunit B [Chlorobium tepidum TLS] gi|21648310|gb|AAM73478.1| DNA gyrase subunit B [Chlorobium tepidum TLS] Length = 647 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 284/593 (47%), Positives = 406/593 (68%), Gaps = 10/593 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++ Y A +IQ+L G++ V+KRP+MYIGD GLHH++YE++DNAIDE+L GY Sbjct: 8 TAQNASTEYGATNIQVLDGIEHVRKRPAMYIGDIHS-RGLHHLVYEIVDNAIDETLAGYN 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V +N DGS TV+D+GRGIP D+H + SA E++MT + AGGKF++ +YKVSGGLH Sbjct: 67 DYIHVAMNPDGSVTVTDHGRGIPVDIHPVKKKSALELVMTVIGAGGKFDKGAYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS W ++ + R+G I+ ++ G+ + G + GT+VTF P +I Sbjct: 127 GVGASVVNALSEWCEVEVYRDGKIFRQTYRRGVPQGGVEEIG-TTDQRGTKVTFKPDPEI 185 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F + +F D + R+REL+FLNS+++I + + E E Y+GG++ FV ++D ++ Sbjct: 186 FKITEFRKDIILDRMRELAFLNSNLRIIV---QDAEGNEEIFHYEGGLKEFVRFIDSNRL 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L++ PI + G RD+ +++A+++ND Y EN+ + NNI +GGTH++G R ALTR + Sbjct: 243 SLLKEPIFLSGERDSTMVEIALQYNDSYQENIFSYVNNINTHEGGTHVTGFRKALTRTLN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y +K+ K K ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE +S+VE+ VN Sbjct: 303 AYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVN 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ + E +P K+I++KV A++ R+AAR+A++LTRRK VL+ + LPGKLADCS D Sbjct: 363 EQLAEFAESNPGTLKLIIEKVKSAAISREAARKAKELTRRKSVLESSGLPGKLADCSIND 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I AL Sbjct: 423 PDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G ++I +PPL Sbjct: 483 GTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 542 Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 Y + G+ QY DE+ + + + G ++ L + Sbjct: 543 YLVKSGREQQYAWDEDERLSIVEQMKKLQKGKANVSIQRYKGLGEMNPEQLWS 595 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 L E+ + ++ V + F F I + ++ Sbjct: 479 ILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-I 537 Query: 701 YLTILSLICNGDKIKIT-------GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 L L+ +G + + + + G+ +S+QRYKGLGEMN QLW T Sbjct: 538 AQPPLYLVKSGREQQYAWDEDERLSIVEQMKKLQK-GKANVSIQRYKGLGEMNPEQLWST 596 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 T++P RSLL+V + +A +AD +FS LMGD+VEPRR+FI++N+ LD+ Sbjct: 597 TMDPAHRSLLQVTVENAMEADQVFSTLMGDKVEPRRDFIEKNARYVRRLDV 647 >gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680] Length = 636 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 299/636 (47%), Positives = 421/636 (66%), Gaps = 10/636 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + Y A IQ+L+GL+AV+KRP MYIG TD GLHH+++E++DN+IDE++ GY Sbjct: 1 MNINGSKNEYTALDIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVFEIVDNSIDEAVAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + D + TV+DNGRGIP D+H + GI A EVI+T LH+G KF Y +SGGL Sbjct: 60 CDEIKVIILDDSTVTVTDNGRGIPVDMHPKMGIPALEVILTTLHSGAKFGGSGYTISGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS WL++ + R+G +Y + G PL VTG A TGT++TF P + Sbjct: 120 HGVGLSVVNALSRWLEVEVARDGQLYHQRYERGKPVTPLAVTG-ACQTTGTKITFSPDPE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ + + RLRELS+LN +I L DKR+ R++ ++ GGI FV YL +++ Sbjct: 179 IFEEICFSAEIIGQRLRELSYLNQGTRIVLCDKRTG--RDVEYYHTGGIRDFVKYLSKNR 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL PI + ++ +++A+++N GY E +L + NNI ++GGTH G ++ LTR + Sbjct: 237 EPLSPEPIYFRIGKEGTVVEVAIQYNTGYTETLLSYANNIHTQEGGTHELGFKNGLTRVV 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K+++ +++G+D REG T+V+S+ + DP+F QTK KL ++ +RS+VE V Sbjct: 297 NEYAKKQGMLKENEGNLLGEDIREGMTAVISVLVQDPQFEGQTKTKLGNAFIRSLVEGAV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +D + A+ +E+P AK IV+K + A R+AAR+AR+LTRRK +LD SLPGKLADCSE+ Sbjct: 357 SDFVGAFFDENPSLAKKIVEKAIAARRAREAARKARELTRRKNLLDSTSLPGKLADCSEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS++EI LITA Sbjct: 417 DPALSELYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKARLDKVLSNEEIRALITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG+D FDINK RYH++IIMTDADVDG+HIR LLLTFF+R M LI G++Y+ +PP Sbjct: 477 IGTGIGED-FDINKARYHRLIIMTDADVDGSHIRVLLLTFFYRYMRPLIEAGYVYVAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + RGK + Y+ ++ L+ +L Q + G ++ L ++ Sbjct: 536 LYELKRGKEVHYIYNDRELQRFLEQQGNKKYGVKRYKGLGEMNPEQLWET-----TMNPE 590 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + I VI E + + Sbjct: 591 NRTLLQVRIEDAIAADVIFSSLMGEKVEPRREFIQE 626 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V ++ + I + + + L+ V + Sbjct: 453 ILNVEKARLDKVLSNEEIRALITAIGTGIGEDFDINKARYHRLIIMTDADVDGSHIRVLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + L + I L + G K ++RYK Sbjct: 513 LTFFYRYMRPLIEAGYVYVAQPPLYELKRGKEVHYIYNDRELQRFLEQQGNKKYGVKRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPS 799 GLGEMN QLWETT+NP+ R+LL+V+I DA AD +FS LMG++VEPRREFIQEN+ L + Sbjct: 573 GLGEMNPEQLWETTMNPENRTLLQVRIEDAIAADVIFSSLMGEKVEPRREFIQENARLVT 632 Query: 800 ALDI 803 LDI Sbjct: 633 NLDI 636 >gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 637 Score = 627 bits (1616), Expect = e-177, Method: Composition-based stats. Identities = 292/584 (50%), Positives = 402/584 (68%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I VT Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIEVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV D+GRGIP + K+ G+ A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INEDNSITVVDDGRGIPVGIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186 VNALS WL++++ ++G+IY+ + G + PL + G + GT+VTFLP +IF Sbjct: 122 VNALSEWLEVQVYKDGDIYQQRYERGKVTYPLKIVGKCSPDQHGTKVTFLPDKEIFEETI 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I+L D R + E T Y+GGI+ FV+YL++ K PL Sbjct: 182 YDYDTLKIRLRETAFLTKNLRITLKDDRDEKK-EKTFHYEGGIKEFVTYLNKGKTPLYDQ 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +GS++ + ++++M+ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y K Sbjct: 241 VIYCEGSKEGVYVEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K ++ S+ G+D REG T+++SIK+ +P+F QTK+KL +SE RS V++ V++ L+ Sbjct: 301 NKLLKDNEDSLSGEDIREGLTAIISIKVEEPQFEGQTKQKLGNSEARSAVDNIVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AK + +K + A R AAR+ARDLTRRK LD +LPGKLADCS+++P+ E Sbjct: 361 FLEQNPAIAKAMCEKSIMAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++ + EI +ITA GTGI Sbjct: 421 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + + Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 K + Y ++ L L + G + L Sbjct: 540 SKKVWYAYSDDELNSILTDIGRDTNNKIQRYKGLGEMDAEQLWE 583 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 477 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 536 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + IGR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 537 VEKSKKVWYAYSDDELNSILTDIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRV 596 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 597 TLDEETTSEIDLTFTTLMGDQVEPRREFIEANAKRVQNLDI 637 >gi|289577274|ref|YP_003475901.1| DNA gyrase subunit beta [Thermoanaerobacter italicus Ab9] gi|289526987|gb|ADD01339.1| DNA gyrase, B subunit [Thermoanaerobacter italicus Ab9] Length = 633 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 308/584 (52%), Positives = 411/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G I+ ++ G+ L + G T +TF P +IF Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTELEIIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FNYD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIRLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y EN+ F NNI ++GGTHL G +SALT+ I Y Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTGI Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY IT Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y ++ L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDKELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDKELDRILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI+ + Sbjct: 570 GLGEMNADQLWDTTMDPEKRTILKVTLEDAIAADEIFTILMGDKVEPRREFIERYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|218961619|ref|YP_001741394.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans] gi|167730276|emb|CAO81188.1| DNA gyrase subunit B [Candidatus Cloacamonas acidaminovorans] Length = 632 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 307/632 (48%), Positives = 418/632 (66%), Gaps = 10/632 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +Q+S+Y A +I++LKGL+AV+KRP+MYIG T E GLHH++YEV+DN+IDE+L GY D I Sbjct: 1 MQSSTYTASNIKVLKGLEAVRKRPAMYIGGTS-ERGLHHLVYEVIDNSIDEALAGYCDEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T+ +G+ V DNGRGIP D+ K+ G+ A +V++T LHAGGKF+ KSYKV+GGLHGVG Sbjct: 60 ICTITTEGNIRVEDNGRGIPVDIQKDMGVPAVQVVLTVLHAGGKFDDKSYKVAGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L++ I ++G Y M F G+ L V G N TGT VTF P IF Sbjct: 120 VSVVNALSEFLEVNIFKDGKEYFMRFERGLPVTELQVLGDT-NKTGTVVTFRPDPLIFET 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F++D L RLREL+FLNS ++I L D+RS R Y+GGI++FV YL+++KKPL Sbjct: 179 TEFSFDYLTSRLRELAFLNSGLRIILKDERSG--RVHDFKYEGGIKSFVEYLNQNKKPLF 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +PI I ++ + ++A+++N+GY EN+ F NNI +GGTHLSG +S LTR + +Y+ Sbjct: 237 PNPIYISSVKEGMEFEVALQYNEGYQENIFSFANNINTTEGGTHLSGFKSGLTRAVNTYI 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K +K S G+D REG T+V+S+K+ +P+F QTK KL +SEV +V S V + L Sbjct: 297 KNADLLKNEKVSPSGEDIREGLTAVISLKIANPQFEGQTKTKLQNSEVEGIVNSAVYEKL 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP EAK I K + A+ R+AAR+AR+LTRRK VL+ SLPGKLADC+ DP+K Sbjct: 357 MEYFEEHPAEAKNITMKSILAARSREAARKARELTRRKTVLESGSLPGKLADCTLSDPEK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +ELFLVEGDSAGGSAKQGR R QAILPL GK+LN E+AR DK+L++ +I +I ALG G Sbjct: 417 TELFLVEGDSAGGSAKQGRDRSFQAILPLWGKMLNTEKARVDKVLNNDKIQPIILALGAG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG FDI+KLRYHKIIIM DADVDG+HI TLL+TFF+R M +I G LYI PPL+ + Sbjct: 477 IG-QEFDISKLRYHKIIIMADADVDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQV 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK YV +EE + + + G ++ L +D + Sbjct: 536 RKGKQKVYVYNEEERDKAIREFGEKGVLVQRYKGLGEMNAEQLWET-----TLDPKNRKM 590 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 IE + + + + + Sbjct: 591 IAIKMDDAIEADRMFTILMGDEVEPRREFIQE 622 Score = 182 bits (463), Expect = 1e-43, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I ++ + + K+ + I G Sbjct: 499 VDGSHIATLLMTFFYRYMRPVIEEGKLYIAMPPLFQVRKGKQKVYVYNEEERDKAIREFG 558 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 KG+ +QRYKGLGEMNA QLWETTL+P R ++ +K+ DA +AD +F+ LMGDEVEPRRE Sbjct: 559 EKGVLVQRYKGLGEMNAEQLWETTLDPKNRKMIAIKMDDAIEADRMFTILMGDEVEPRRE 618 Query: 791 FIQENSLPS-ALDI 803 FIQEN+ LD+ Sbjct: 619 FIQENARYVKNLDV 632 >gi|297543507|ref|YP_003675809.1| DNA gyrase subunit B [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841282|gb|ADH59798.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 633 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 308/584 (52%), Positives = 411/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G I+ ++ G+ L + G T +TF P +IF Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FNYD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIKLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y EN+ F NNI ++GGTHL G +SALT+ I Y Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTGI Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY IT Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y ++ L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDKELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDKELDRILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI+ + Sbjct: 570 GLGEMNADQLWDTTMDPEKRTILKVTLEDAIAADEIFTILMGDKVEPRREFIERYAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|194332868|ref|YP_002014728.1| DNA gyrase subunit B [Prosthecochloris aestuarii DSM 271] gi|194310686|gb|ACF45081.1| DNA gyrase, B subunit [Prosthecochloris aestuarii DSM 271] Length = 644 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 296/639 (46%), Positives = 419/639 (65%), Gaps = 8/639 (1%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ +SSY A +IQIL G++ V+KRP+MYIGD + GLHH+IYE++DN+IDE+L Sbjct: 1 MSETQTPSASSSYLATNIQILDGIEHVRKRPAMYIGDIN-VRGLHHLIYEIVDNSIDETL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I ++LN DGS TVSDNGRGIP D+H ++ SA E++MT + AGGKF++ +YKVS Sbjct: 60 AGYNDTIEMSLNDDGSVTVSDNGRGIPVDMHPQKKKSALELVMTVIGAGGKFDKGAYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS W ++ + R+G ++ + G+ + + G + TGT+ TF+P Sbjct: 120 GGLHGVGASVVNALSEWCEVEVSRDGKVWYQRYHRGVPQCEVKIIGET-DKTGTKTTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IF +F D + R+REL+FLNS ++I + D E T Y+GGI+ FV+Y D Sbjct: 179 DASIFKTTEFRKDVIIDRMRELAFLNSVLKIVVKDTDDSE---ETFHYEGGIKEFVTYTD 235 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++ L++ P+ + G RD +++A+++ND Y ENV + NNI +GGTH++G R ALT Sbjct: 236 HNRIALVKEPVYLYGERDTTVVEIALQYNDSYQENVFSYVNNINTHEGGTHMTGFRKALT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + +Y +K+ K K S+ GDD +EG T+++S+K+ +P+F QTK KL +SE +S+VE Sbjct: 296 RTLNAYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVE 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S VN+ L+ +LE +P K I++KV A++ RDAAR+A++LTRRK VL+ LPGKLADC Sbjct: 356 SIVNEQLAEFLESNPNVLKTIIEKVKSAALSRDAARKAKELTRRKSVLESTGLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S DP+ EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+ Sbjct: 416 SINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTI 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGT G+D F +KLRY KIIIMTDADVDGAHIRTLLLTFFFR M LI G ++I Sbjct: 476 ILALGTNFGEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLIEAGKVFIA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK +Y DE+ + S++ + + + ++ + + Sbjct: 536 QPPLYLIKAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNPEQLWSTTM 595 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + + +E + + + Sbjct: 596 DPEHRSLLQVTVENAMEADQVFSTLMGDKVDPRREFIEK 634 Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + ++ V + F F I + ++ L LI Sbjct: 484 GEDEFMADKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPLIEAGKVF-IAQPPLYLI 542 Query: 709 CNGDKIKI---TGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSL 762 G + K + + + +KG I++QRYKGLGEMN QLW TT++P+ RSL Sbjct: 543 KAGKEQKYAWDEDERTTIMEMMKKSQKGKTNINIQRYKGLGEMNPEQLWSTTMDPEHRSL 602 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+V + +A +AD +FS LMGD+V+PRREFI++N+ LD+ Sbjct: 603 LQVTVENAMEADQVFSTLMGDKVDPRREFIEKNARYVRRLDV 644 >gi|291457885|ref|ZP_06597275.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419429|gb|EFE93148.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 656 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 285/584 (48%), Positives = 392/584 (67%), Gaps = 3/584 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + +Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY I+V Sbjct: 21 SENYGADQIQILEGLEAVRKRPGMYIGTTSS-RGLHHLVYEIVDNSVDEALAGYCGEISV 79 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D S TV D+GRGIP D+ K+ G A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 80 TIEPDNSITVEDDGRGIPVDIQKKAGKPALEVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 139 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS L +R+ R+G IY+M F G P+ V GS GT V F P +IF Sbjct: 140 VVNALSRKLWVRVYRDGKIYQMDFERGKTTAPMRVVGSCEPERHGTSVHFQPDPEIFEET 199 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++++TL+ RLRE +FL +++I+L DKR + +E + ++GGI+ FVSYL+R K PL Sbjct: 200 VYDFETLKVRLRETAFLTRALRINLKDKREGQEQEKSFHFEGGIKEFVSYLNRGKDPLYS 259 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D I +++AM+ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y Sbjct: 260 EVIYCEGEKDKIFVEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAR 319 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + ++ G+D REG T ++S+K+ DP+F QTK+KL +SE ++ V+S V++ L+ Sbjct: 320 QNKLLKDSEPNLSGEDIREGLTGIISVKIEDPQFEGQTKQKLGTSEAQTAVQSIVSEQLT 379 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AKI+ +K + A R AAR+ARDLTRRK L+ LPGKL DCS RDP Sbjct: 380 YFLEQNPSVAKIMCEKSILAQRARAAARKARDLTRRKSALEGVGLPGKLVDCSSRDPASC 439 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSA G AK+GR+ E QA+LPLRGK+LNV++AR D++ +++EI +ITA GTGI Sbjct: 440 EIFIVEGDSALGPAKEGRNVETQAVLPLRGKVLNVQKARLDRIYANEEIKGMITAFGTGI 499 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI KLRYHKIIIMTDADVDGAHI TL+LTF + MP LI G +Y+ +PPL+ I Sbjct: 500 NED-FDITKLRYHKIIIMTDADVDGAHIATLMLTFIYNFMPELIRQGHIYLAQPPLFNIQ 558 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + K Y +E ++ L G + +L Sbjct: 559 KNKKHYYAYSDEEYQNILREIGAEGTDVSRFKGLGEMDTEELAE 602 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 3/104 (2%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + ++ N + + IG +G + R+KGLGEM+ +L ETT++P+TR+L Sbjct: 553 PLFNIQKNKKHYYAYSDEEYQNILREIGAEGTDVSRFKGLGEMDTEELAETTMDPETRTL 612 Query: 763 LRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 LRV + D ++ D F+ LMGD+VEPRREFI++N+ LD+ Sbjct: 613 LRVNMAEDDRAELDLTFTTLMGDQVEPRREFIEQNAKYVNHLDV 656 >gi|332980610|ref|YP_004462051.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON] gi|332698288|gb|AEE95229.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON] Length = 633 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 315/636 (49%), Positives = 421/636 (66%), Gaps = 13/636 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + +YDA IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE L G+ Sbjct: 1 MAE---SGAYDASQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEVLAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + ++ D S TV DNGRGIP +H + G SA EV +T LHAG KF YKVSGGL Sbjct: 57 CDTIKIIIHKDNSITVEDNGRGIPVGIHPKTGRSAVEVALTMLHAGSKFGGGGYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL + +K+ G+IY + G L V G ++TGT ++F P Sbjct: 117 HGVGVSVVNALSEWLIVTVKQNGHIYRQRYERGKPVTDLEVIGDT-DETGTTISFKPDYQ 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 +F ++NYDTL++R REL+FLN V I+LID+R + Y+GGI +FV YL+++K Sbjct: 176 VFEELEYNYDTLRNRFRELAFLNKEVTITLIDERDDKK--EEFHYEGGIVSFVEYLNKNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + I I G RD++ +++A+++ND Y E+V F NNI +GGTHLSG RSA+T+ I Sbjct: 234 SPLHKEAIYISGMRDDVQVEVAIQYNDSYVESVYAFANNIETPEGGTHLSGFRSAMTKVI 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K ++ S+ GDD REG T+++S+K+ DP+F QTKEKL +SEVR +V+S V Sbjct: 294 NDYARKLNMLKPNEPSLSGDDVREGLTAIISVKLSDPQFEGQTKEKLGNSEVRGIVDSIV 353 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +DGLS + EEHP KII++K + A R+AAR+AR+LTRRK L+ S+PGKLADCSER Sbjct: 354 SDGLSTYFEEHPSVTKIIIEKAISAFRAREAARKARELTRRKSALESVSMPGKLADCSER 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ R D++LS++EI +ITA Sbjct: 414 DPKLCEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKTRLDRILSNEEIKAMITA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG+D FDI+KLRY +II MTDADVDG+HIRTLLLTFF+R M L+ NG +YI +PP Sbjct: 474 FGAGIGED-FDISKLRYERIICMTDADVDGSHIRTLLLTFFYRYMRPLLENGNVYIAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y+ + LE L G + L + +D Sbjct: 533 LYKVEKGKKEYYIYSDRELEQLLTRIGRDGITVQRYKGLGEMDPVQLWDT-----TMDPA 587 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + I I + ++ + +AS Sbjct: 588 KRTMLKVSIEDAIAADEIFTILMGDNVEPRREFIAS 623 Score = 184 bits (466), Expect = 8e-44, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S + ++ V + Sbjct: 450 ILNVEKTRLDRILSNEEIKAMITAFGAGIGEDFDISKLRYERIICMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + + + + + + I L + IGR GI++QRYK Sbjct: 510 LTFFYRYMRPLLENGNVYIAQPPLYKVEKGKKEYYIYSDRELEQLLTRIGRDGITVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-LPS 799 GLGEM+ QLW+TT++P R++L+V I DA AD++F+ LMGD VEPRREFI N+ L Sbjct: 570 GLGEMDPVQLWDTTMDPAKRTMLKVSIEDAIAADEIFTILMGDNVEPRREFIASNAHLVK 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|333029415|ref|ZP_08457476.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011] gi|332740012|gb|EGJ70494.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011] Length = 652 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 299/603 (49%), Positives = 395/603 (65%), Gaps = 16/603 (2%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ SY ADSIQ+L+GL+AV+KRP+MYIGDT GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEQIQANKGSYKADSIQVLEGLEAVRKRPAMYIGDTS-LKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIPTD H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIDVTINEDNSITVKDNGRGIPTDFHEKEQRSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + + R G Y + G P+ G +DTGT+ TF P Sbjct: 120 GGLHGVGVSCVNALSTRMITEVSRNGITYRQEYACGKPQYPVKEVG-TTDDTGTKQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFV 233 IF+V ++YD L R+REL+FLN+ ++ISL DKR+ + + K G++ FV Sbjct: 179 DPTIFTVLVYSYDILATRMRELAFLNAGLKISLTDKRTQNEDGTYKSESFQSKEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I + + + I++A+ +N + EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYLNTEKQGVPIEVAIMYNTSFSENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKLLDKIKVDISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNTEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR+L +RK + LPGK Sbjct: 359 GAVDQAVGEALNYYLEEHPREAKTIVDKVILAATARHAARKARELVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCSE++P+ ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A + K L S+E Sbjct: 419 LADCSEKNPEICELFLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMYHKALESEE 478 Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEEDSKEANLEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQMI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKND 586 NG+LYI PPLY +GK+ +Y EE ++ N E G ++ + Sbjct: 539 QNGYLYIATPPLYLCRKGKTEEYCWTEEQRLAFINNYGGGSESGIHIQRYKGLGEMNAHQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 11/203 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ E + I +L + + EK + I Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKEANLEKLRYHKI------ 509 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSL 722 + V + F F + I + + L L G + Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQMIQNGYLY-IATPPLYLCRKGKTEEYCWTEEQR 568 Query: 723 LDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L I + G GI +QRYKGLGEMNA QLWETT++PD R L +V I +AS AD +FS Sbjct: 569 LAFINNYGGGSESGIHIQRYKGLGEMNAHQLWETTMDPDNRMLKQVTIDNASDADRIFSM 628 Query: 780 LMGDEVEPRREFIQENSLPSALD 802 LMG++V PRREFI+EN+ + +D Sbjct: 629 LMGEDVGPRREFIEENATYANID 651 >gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus DSM 14838] gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus DSM 14838] Length = 653 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 282/604 (46%), Positives = 391/604 (64%), Gaps = 17/604 (2%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ N N SY A++IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEQINSNNGSYSAENIQVLEGLEAVRKRPAMYIGDIS-TKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G P+ G + TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233 + IF+ +NY+ L R+REL++LN+ ++I+L D R + + + + G++ FV Sbjct: 179 DNTIFTETVYNYEILATRMRELAYLNAGIKITLTDLRVKDEENNAKMEVFYSEEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I I + +++A+ +N Y+EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK++V KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I NG+LYI PPLY +GK +Y ++ + ++ E + G ++ Sbjct: 539 IRNGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L + Sbjct: 599 QLWS 602 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 35/66 (53%), Positives = 51/66 (77%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLW TT+NP+ R L ++ I +A++ D +FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWSTTMNPENRMLKQISIENAAEVDYIFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|167038684|ref|YP_001661669.1| DNA gyrase subunit B [Thermoanaerobacter sp. X514] gi|300913756|ref|ZP_07131073.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561] gi|307723227|ref|YP_003902978.1| DNA gyrase subunit B [Thermoanaerobacter sp. X513] gi|166852924|gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514] gi|300890441|gb|EFK85586.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561] gi|307580288|gb|ADN53687.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X513] Length = 633 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 308/584 (52%), Positives = 410/584 (70%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ +Y A IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 3 KDETYTASQIQILEGLEAVRKRPGMYIGST-GSRGLHHLVYEVVDNSIDEALAGYCKNIV 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D+GRGIPTD+H + G A EV +T LHAGGKFN +YKVSGGLHGVGV Sbjct: 62 VTIHKDNSITVEDDGRGIPTDIHPKVGKPAVEVALTMLHAGGKFNNDAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L++ +K+ G I+ ++ G+ L + G T +TF P +IF Sbjct: 122 SVVNALSEKLEVVVKQRGKIFRQTYERGVPKTDLEIIGETEETG-TTITFKPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FNYD L RLREL+FLN + I LID+R + Y+GGI +FV YL+R+K+ L + Sbjct: 181 VFNYDVLAQRLRELAFLNKGINIRLIDERDGKE--EVFNYEGGIISFVKYLNRNKEVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++ + +++ M++ND Y EN+ F NNI ++GGTHL G +SALT+ I Y Sbjct: 239 EPIYMEAKNTDYEVEVCMQYNDTYTENIFSFANNIDTREGGTHLVGFKSALTKVINDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K +++++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+VE+ V + LS Sbjct: 299 KYGIIKDNEKNLQGEDVREGLTAIVSVKLKNPQFEGQTKTKLGNSEMRSIVENVVIEKLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 A+LEE+P AK+IV+K A+ R+AAR+AR+LTRRK L+ +LPGKLADCSE+DP K Sbjct: 359 AFLEENPSVAKVIVEKATQAARAREAARKARELTRRKSALENTTLPGKLADCSEKDPSKC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR+ QAILPLRGKILNVE+AR DK+LS++EI +ITALGTGI Sbjct: 419 ELFLVEGDSAGGSAKTGRNSRFQAILPLRGKILNVEKARLDKILSNEEIRAMITALGTGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+KLRYHK++IMTDADVDG+HIRTLLLTFF+R M LI NG +YI +PPLY IT Sbjct: 479 G-DEFDISKLRYHKVVIMTDADVDGSHIRTLLLTFFYRFMRPLIENGNVYIAQPPLYKIT 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK + Y + L+ L G ++ + L + Sbjct: 538 KGKKVYYAYSDRELDRILNEIGRENYTVQRYKGLGEMNADQLWD 581 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S +V V + Sbjct: 450 ILNVEKARLDKILSNEEIRAMITALGTGIGDEFDISKLRYHKVVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + L + IGR+ ++QRYK Sbjct: 510 LTFFYRFMRPLIENGNVYIAQPPLYKITKGKKVYYAYSDRELDRILNEIGRENYTVQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW+TT++P+ R++L+V + DA AD++F+ LMGD+VEPRREFI++++ Sbjct: 570 GLGEMNADQLWDTTMDPEKRTMLKVTLEDAIAADEIFTILMGDKVEPRREFIEKHAKTVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2] gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2] Length = 635 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 308/645 (47%), Positives = 426/645 (66%), Gaps = 18/645 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L GY Sbjct: 1 MS---QQNTYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIP + + S EV+MT LHAGGKF + YKVSGGL Sbjct: 57 CTKIQVRVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGEGYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + + +K GN+Y+ + G+ + + G + ++TGT V F P + Sbjct: 117 HGVGVSVVNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGES-DETGTTVKFKPDPE 175 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ + Y+TLQ R+REL+FLN ++I LID+R+ + Y GGI FV +L+R+ Sbjct: 176 IFTDTTVYEYETLQSRIRELAFLNKGLEIELIDERTGTSN--SFKYDGGIIEFVKHLNRN 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + + PI ++GS+D+I +++++++NDGY EN+ F NNI +GGTH SG +SALTR Sbjct: 234 KEVMHEEPIYVEGSKDHIQVEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSALTRI 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + + GDD REG T+++S+K+P+P+F QTK KL +SEVR +VESF Sbjct: 294 INDYARKTGLIKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESF 353 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L+E+P ++ IV+K L A+ R+AAR+AR+LTRRK L+++SLPGKLADCS Sbjct: 354 FAEKLQEFLDENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLADCSS 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVERAR D++L + EI +IT Sbjct: 414 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIRAIIT 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D FD+ K RYHK+IIMTDADVDGAHIRTL+LTFFFR M +I G++YI +P Sbjct: 474 ALGTGIG-DDFDLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQP 532 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598 PL+ I R K ++Y + E+ E+ + ++ G ++ L +D Sbjct: 533 PLFKIERNKVIRYAQSEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWET-----TMD 587 Query: 599 KLIKDFYPNHDKTFIEQAVISGVF---NCESDQEINVSLASKLAN 640 + + IE VI N E ++ A + N Sbjct: 588 PESRTMLQVSIEDAIEADVIFDTLMGDNVEPRRDFIQQFAKDVKN 632 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 13/208 (6%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A + + + I +L + + + + + K Sbjct: 439 RHFQAILPLRGKILNVERARLDRILGNAEIRAIITALGTGIGDDFDLAKARYHK------ 492 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 ++ V + F F K I + I + + N Sbjct: 493 -----VIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQPPLFKIERNKVIRYAQ 547 Query: 718 GPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + I G +++QRYKGLGEMNA+QLWETT++P++R++L+V I DA +AD + Sbjct: 548 SEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVSIEDAIEADVI 607 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD VEPRR+FIQ+ + LDI Sbjct: 608 FDTLMGDNVEPRRDFIQQFAKDVKNLDI 635 >gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271] gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271] Length = 645 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 283/586 (48%), Positives = 399/586 (68%), Gaps = 4/586 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + Y+A I++L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE++ G+ D Sbjct: 12 NSPAADYNAGQIEVLEGLEAVRKRPGMYIGSTTS-RGLHHLVYEIVDNSIDEAMAGFCDN 70 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + VT++ D S TV DNGRGIP D+H + A EV MT LHAGGKF+ +YKVSGGLHGV Sbjct: 71 VEVTIHNDNSITVKDNGRGIPVDIHPKMKKPAVEVAMTILHAGGKFSGDAYKVSGGLHGV 130 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+SVVNALS WLK+ +K G Y+ + G L G+ TGT+++F P + IF Sbjct: 131 GMSVVNALSEWLKVEVKINGIRYQQEYSRGKPLYDLKEAGTYKGRTGTQISFKPDAQIFE 190 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++Y+ L+ RL+ELSFLN ++ I+L D+R+ + GGI +V YL+R+K + Sbjct: 191 DVIYDYEVLEQRLKELSFLNKNIGIALKDERTG--AGELFKHSGGIVDYVKYLNRNKDAI 248 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI + ++ +++A ++NDGY EN+ + NNI +GGTH +G ++ALTR I Y Sbjct: 249 QPKPIYFEAQKEENIVEIAFQYNDGYSENIYSYANNINTTEGGTHEAGFKAALTRVINDY 308 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K ++ ++ G+D REG T+++S+K+ +P+F QTK KL +SE+RS+V+S + DG Sbjct: 309 ARKNNILKANENNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEMRSIVDSILGDG 368 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS + EE+P AK IV+K L A+ R AAR+ARDLTRRK LD SLPGKLADC+ ++ + Sbjct: 369 LSTFCEENPSVAKKIVEKGLQATRARMAARKARDLTRRKNALDSTSLPGKLADCAWKEAQ 428 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E++LVEGDSAGGSAKQGR ++ QAILPLRGKILNVE+AR D++L+++EI +ITA+GT Sbjct: 429 FCEIYLVEGDSAGGSAKQGRDQKFQAILPLRGKILNVEKARLDRILANEEIRAMITAMGT 488 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI D F++ K RY+KI+IMTDADVDG+HIR LLLTFF+R M L+ N ++YI +PPL+ Sbjct: 489 GI-SDDFNLEKARYNKIVIMTDADVDGSHIRILLLTFFYRYMKPLLENNYVYIAQPPLFQ 547 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I +GK +QY +E L L G ++ L Sbjct: 548 IKKGKEIQYAYSDEELNHILEMIGRERVEIQRYKGLGEMNPEQLWE 593 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + ++ + +V V + Sbjct: 462 ILNVEKARLDRILANEEIRAMITAMGTGISDDFNLEKARYNKIVIMTDADVDGSHI--RI 519 Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQR 738 + +F +Y + + N L I G +I+ L+ I IGR+ + +QR Sbjct: 520 LLLTFFYRYMKPLLENNYVYIAQPPLFQIKKGKEIQYAYSDEELNHILEMIGRERVEIQR 579 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+TR++L+VK+ DA +A++LF+ MGD+V+PR+E+IQ+ + Sbjct: 580 YKGLGEMNPEQLWETTMNPETRTILQVKMEDARRAEELFTIFMGDKVDPRKEYIQKYAKD 639 Query: 799 S-ALDI 803 LDI Sbjct: 640 VKNLDI 645 >gi|289450191|ref|YP_003474441.1| DNA gyrase subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184738|gb|ADC91163.1| DNA gyrase, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 696 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 394/589 (66%), Gaps = 4/589 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D NS Y IQ+L+GL+AV+KRP MYIGDT GLHH++YE++ N++DE+L G D Sbjct: 59 DTSNNSKYSESDIQVLEGLEAVRKRPGMYIGDT-TLRGLHHLVYEIVANSVDEALAGRCD 117 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +I +T+N DGS TV D+G GIP +H +GI EV+ T LHAGGKF +Y VSGGLHG Sbjct: 118 MIYLTINHDGSITVEDDGSGIPIGIHPTKGIPTVEVVHTILHAGGKFGGGAYSVSGGLHG 177 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDI 181 VG SVVNALS W+ + +KREGNIY++SF G++ PL + G N+TGT+ F+P +I Sbjct: 178 VGASVVNALSEWMDVYVKREGNIYKISFARGVVTEPLKIIGHCPINETGTKTVFMPDKEI 237 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHK 240 F FNYD + R RE++FLN + I D+R E + Y GGI +FV Y++ HK Sbjct: 238 FPDIHFNYDNMLTRYREMAFLNKEITIVFRDERPEEEVVEKVLHYDGGIISFVEYMNLHK 297 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL PI S +N +++A+++N+ Y EN+ + NNI +GGTHL+G +SA+T+ I Sbjct: 298 EPLFPKPIYFASSINNSYVEVALQYNNTYAENIYSYANNIATPEGGTHLTGFKSAITKVI 357 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K + +++ G+DCREG T ++S+K+P+P+F QTK KL +SE+R++VES + Sbjct: 358 NDYARKYGFLKTNDKNLQGEDCREGLTCIVSVKLPEPQFEGQTKSKLGNSEMRTLVESMI 417 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND +LEE+P AKII++K + AS RDAA++AR++TRRK D SLPGKL DC E Sbjct: 418 NDKFPVFLEENPAIAKIIMEKCISASRARDAAKKAREMTRRKNTFDSVSLPGKLVDCQEN 477 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+F+VEGDSAGG+AK GR R+ QAILPL GK+LNVER+R DK+ ++ ++ ++ A Sbjct: 478 DPTLCEIFIVEGDSAGGNAKGGRERKYQAILPLWGKMLNVERSRVDKVYNNSKLSPIVMA 537 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG D FD+NKLRY+K+IIM DADVDGAHIRTLLLTFFFR M L+ G ++I PP Sbjct: 538 LGTGIG-DEFDLNKLRYNKVIIMADADVDGAHIRTLLLTFFFRHMKPLVEKGHVFIACPP 596 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 L+ + + Y DE +E Q + G + L Sbjct: 597 LFKVENDNQVFYAYDEAGVEKIKQEQGWDKPKLQRYKGLGEMDAEQLWE 645 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 42/67 (62%), Positives = 53/67 (79%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT+NP TR LLRV + DA AD F+ LMG+EV+PR++FIQ N Sbjct: 629 LQRYKGLGEMDAEQLWETTMNPATRKLLRVDLEDAQSADQTFNLLMGEEVKPRKDFIQAN 688 Query: 796 SLPSALD 802 + + LD Sbjct: 689 AKYALLD 695 >gi|325299173|ref|YP_004259090.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170] gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170] Length = 654 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 284/605 (46%), Positives = 388/605 (64%), Gaps = 18/605 (2%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + ++Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEELTPKGGNTYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + + R G IY+ + G P+ G + TGT TF P Sbjct: 120 GGLHGVGVSCVNALSTHMITNVFRNGKIYQQEYACGKPLYPVKEVG-TTDITGTRQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233 + IF+V ++ Y+ LQ R+REL++LN + I+L DKR E ++ + G++ FV Sbjct: 179 DASIFTVTEYKYNILQARMRELAYLNKGITITLTDKREKEEDGSYKQEVFHSEEGVKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ PL+ I + + + I+ A+ +N G+ EN+ + NNI +GGTH +G R Sbjct: 239 RFLNSTNTPLIDDVIYLNTEKQGVPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + Y E S +K K + G+D REG +V+S+K+ +P+F QTK KL ++EV Sbjct: 299 TALTRVLKKYAEDSKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKLIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R P++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSRTPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ALG G +I+KLRY+K+IIMTDADVDG+HI TL++T F+R MP Sbjct: 479 VNNIIQALGVRFGVDDSEDSKKANIDKLRYNKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584 +I G LYI PPLY ++GK +Y +E + ++ E G ++ Sbjct: 539 VIQGGHLYIANPPLYKCSKGKVSEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 56/70 (80%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 GI QRYKGLGEMN QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENAAEADYIFSMLMGDDVAPRREFI 643 Query: 793 QENSLPSALD 802 ++++ + +D Sbjct: 644 EKHATYANID 653 >gi|255659815|ref|ZP_05405224.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544] gi|260847890|gb|EEX67897.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544] Length = 688 Score = 625 bits (1611), Expect = e-176, Method: Composition-based stats. Identities = 304/583 (52%), Positives = 402/583 (68%), Gaps = 4/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+ IQIL+GL+AV+ RP MYIG T E GLHH++YEV+DN+IDE+L GY D I V Sbjct: 58 EADYGAEQIQILEGLEAVRMRPGMYIGSTS-ERGLHHLVYEVVDNSIDEALAGYCDHIDV 116 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S TV DNGRGIP D+H E G A EV++T LHAGGKF YKVSGGLHGVGVS Sbjct: 117 TIHKDNSITVVDNGRGIPVDMH-ESGKPAVEVVLTVLHAGGKFGGDGYKVSGGLHGVGVS 175 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ +++++KR+G IYE++F G+ PL V G+ T V F+P +IFSV Sbjct: 176 VVNALSTSMEVQVKRDGKIYEIAFERGVTTKPLTVVGTTTETG-TRVHFMPDPEIFSVTT 234 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++Y+TL+HRLRELSFLN + I L D+R R + GGI +FV +L+R K+ L Sbjct: 235 YSYETLRHRLRELSFLNHGITIGLHDERVEPVRSEQFHFDGGISSFVEHLNRKKEVLNPE 294 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI G +D+ +++AM++ND Y EN+ F NNI ++GGTHL+G + ALTR + K Sbjct: 295 PIYFNGVKDDTVVEIAMQYNDSYQENIYSFVNNINTEEGGTHLAGFKLALTRAANDFARK 354 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ GDD REG T V+S+K+ +P+F QTK KL +SEVR +V+S V +GLS Sbjct: 355 QGILKDKDSNLSGDDVREGLTCVISLKIREPQFEGQTKTKLGNSEVRGIVDSIVTEGLSE 414 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + +E+P K I+ K + A+ R+AAR+AR+LTRRK L+++SLPGKLADCS +DP+++E Sbjct: 415 YFDENPAITKRIIDKAIMAARAREAARKARELTRRKNALEVSSLPGKLADCSVKDPEQAE 474 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+ ++ EI T+ITA GTGI Sbjct: 475 IYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKIFANAEIRTMITAFGTGI- 533 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 + FD++K RY KIIIMTDADVDGAHIRTLLLTF +R M LI +G +YI +PPLY I + Sbjct: 534 SEDFDLSKRRYGKIIIMTDADVDGAHIRTLLLTFLYRYMKPLIEHGHVYIAQPPLYQIRK 593 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 GK Y ++ L L G ++ L Sbjct: 594 GKKHWYTYSDDELSKKLDEVGRDGVTVQRYKGLGEMNPEQLWE 636 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + S ++ V + + Sbjct: 505 ILNVEKARLDKIFANAEIRTMITAFGTGISEDFDLSKRRYGKIIIMTDADVDGAHI--RT 562 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKI-KITGPCSLLDTIFSIGRKGISMQR 738 + +F +Y + I G K L + +GR G+++QR Sbjct: 563 LLLTFLYRYMKPLIEHGHVYIAQPPLYQIRKGKKHWYTYSDDELSKKLDEVGRDGVTVQR 622 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P+ R++LRV++ DA +AD+LF+ LMGD+VEPRR+FI+EN+ Sbjct: 623 YKGLGEMNPEQLWETTMDPEGRTMLRVEMEDAEEADELFTILMGDKVEPRRQFIEENAKL 682 Query: 799 S-ALDI 803 LDI Sbjct: 683 VRNLDI 688 >gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989] gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989] Length = 651 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 298/599 (49%), Positives = 410/599 (68%), Gaps = 7/599 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ I Y A+ IQ+L+GL+ V+KRP MYIG T G+ GLHH++YE++DN+IDE+L G+ Sbjct: 12 MSEKIDKK-YGAEEIQVLEGLEPVRKRPGMYIGST-GKPGLHHLVYEIVDNSIDEALAGH 69 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGG 119 + I + +N DGS V DNGRG+P D+H ++ I A EVI + LHAGGKF+ YKVSGG Sbjct: 70 CNEIKICINEDGSIRVEDNGRGMPVDIHPKQKIPAVEVIHSILHAGGKFDENGGYKVSGG 129 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALSS ++++IKR GN+Y+ + G L + G +TG+ F+P Sbjct: 130 LHGVGASVVNALSSRMEVKIKRNGNLYKQEYSRGKTMTKLEIIG-TSTETGSITEFMPDD 188 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F+YDTL +R RE++FLN ++I L DKR + T Y+GGI+ F+ Y +++ Sbjct: 189 QIFDDIEFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNTYCYEGGIKEFIKYQNKN 248 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + I DN +++A+++ D Y E +L + NNI +GG HLSG +SALTR Sbjct: 249 KEKLHEDIIFFDKKLDNSQVEVAIQYTDRYSETLLSYANNINTTEGGYHLSGFKSALTRV 308 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y +K+ ++ S++G+D REG T+++S+K+ +P+F QTK KL +S +R VVE+ Sbjct: 309 INDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEGQTKTKLGNSFIRGVVETA 368 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ + A+L EHP +AKII++K + ++ VR+AA++ARDLTRRK LD +LPGKL+DCSE Sbjct: 369 VNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKTALDSLALPGKLSDCSE 428 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DPK SE+FLVEGDSAGGSA+QGR R QA+LPLRGKILNVE+AR DK+LSS+EI +IT Sbjct: 429 KDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKARLDKILSSEEIKNMIT 488 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A G GIG D F+++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R M L+ G +Y +P Sbjct: 489 AFGCGIG-DDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMMPLVEAGHVYAAQP 547 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PLY + +GK Y E + + N + G + N L D K Sbjct: 548 PLYKVKKGKKEYYTYSENEQKKLMKNLAEQGGKSDIQRYKGLGEMDYNQLWETTMDYDK 606 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 84/480 (17%), Positives = 164/480 (34%), Gaps = 26/480 (5%) Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLE-AKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 S+E S+ E +D + +E + ++ R + Sbjct: 174 TSTETGSITEFMPDDQIFDDIEFDYDTLNYRFREMAFLNKGLKIQLEDKRKGREKTNTYC 233 Query: 407 IASLPGKLADCSERDPKKSELFLVEGD-----SAGGSAKQGRSRENQAILPLRGKILNVE 461 + ++ +K ++ D S A Q R ++ +L I E Sbjct: 234 YEGGIKEFIKYQNKNKEKLHEDIIFFDKKLDNSQVEVAIQYTDRYSETLLSYANNINTTE 293 Query: 462 RARFDKMLSSQEIGTLITALG----TGIGQDSFDINKLRYHKIII----MTDADVDGAHI 513 S + G +S +R I +T+ +G Sbjct: 294 GGYHLSGFKSALTRVINDYAKKAKLIGENDNSLLGEDVREGLTAIISVKLTNPQFEG-QT 352 Query: 514 RTLLLTFFFRQMPSLIHNGFLY---IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 +T L F R + N +Y I P I K ++ + E+ + Sbjct: 353 KTKLGNSFIRGVVETAVNENVYAFLIEHPKQAKIIIEKCIKSARVREAAKKARDLTRRKT 412 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESD 627 ++ + ++ + + ++ + QAV+ + N E Sbjct: 413 ALDSLALPGKLSDCSEKDPKLSEIFLVEGDSAGGSARQGRDRNRQAVLPLRGKILNVEKA 472 Query: 628 QEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGS 687 + + + ++ N + + ++ V + F + Sbjct: 473 RLDKILSSEEIKNMITAFGCGIGDDFELDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRY 532 Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGE 744 + + + + + + L+ + G K +QRYKGLGE Sbjct: 533 MMPLVEAGHVYAAQPPLYKVKKGKKEYYTYSENEQKKLMKNLAEQGGKS-DIQRYKGLGE 591 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 M+ +QLWETT++ D R+L+++ + DAS ADD+F+ LMGD+V PR++FI+EN+ LDI Sbjct: 592 MDYNQLWETTMDYDKRTLIQITVEDASAADDIFTTLMGDKVPPRKKFIEENARYVKNLDI 651 >gi|269925173|ref|YP_003321796.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798] gi|269788833|gb|ACZ40974.1| DNA gyrase, B subunit [Thermobaculum terrenum ATCC BAA-798] Length = 640 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 314/593 (52%), Positives = 413/593 (69%), Gaps = 9/593 (1%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + S+Y+A+SIQ+L+GL+AV+KRP MYIG TD GLHH+IYE++DN++DES+ Sbjct: 1 MAQLEEKVISNYNAESIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLIYEIVDNSVDESMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I V ++ D S TV DNGRGIP +H + SA EV+MT LHAGGKF YKVSG Sbjct: 60 GYCDFIEVHIHKDKSVTVRDNGRGIPVGIHPKLKKSALEVVMTVLHAGGKFGSGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG SVVNALS +L + REG I+ S+ G+ P+ G + TGT +TF P Sbjct: 120 GLHGVGASVVNALSEYLIAEVHREGKIWRQSYERGVPKTPVEAIGDT-DRTGTIITFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +D+FS ++ +DTL R RE+++LN ++I+ ID R + + +GGI +FV +L++ Sbjct: 179 ADLFSTLEYQFDTLAQRFREIAYLNKGLKITFIDDRDDKELTLYF--EGGIASFVRHLNK 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I + I +++A+++ DG++E++ FTNNI DGGTHL+G R+ALTR Sbjct: 237 NRNVLTEKPIYIHKQLNGIDVEVAIQYTDGFNESLHTFTNNINTVDGGTHLTGFRTALTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y K+ K + G+D REG T+V+S+K+PDP+F QTK KL SSE VV S Sbjct: 297 TLNDYAVKNGLLKDSDTKLTGEDVREGLTAVVSVKLPDPQFEGQTKSKLGSSEAERVVAS 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V DGL ++ +E+P +AK I++K + A+ R+AAR+ARDL RKG LD +LPGKLADCS Sbjct: 357 VVRDGLLSYFDENPSDAKRIIEKAITAARAREAARKARDLVVRKGALDGMTLPGKLADCS 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ERDP+ SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DKMLSS EI LI Sbjct: 417 ERDPRHSELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKMLSSAEIKALI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG DSFDI+KLRYH+I +MTDADVDGAHIRTLLLTFFFR MP +I NG LYI Sbjct: 477 TALGTGIG-DSFDISKLRYHRIFLMTDADVDGAHIRTLLLTFFFRHMPDIIKNGHLYIAM 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I GK +V +E + L +N + S+ I G ++ L Sbjct: 536 PPLYKIQVGKEKYFVYSDEERDRVLAGLNGNRSKAIIQRYKGLGEMNPEQLWE 588 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 15/139 (10%) Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 L + F + + + + + +K + D + + Sbjct: 509 HIRTLLLTFFFRHMPDIIK--NGHLYIAMPPLYKIQVGKEKYFVYSDEER-DRVLA---- 561 Query: 733 GIS-------MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G++ +QRYKGLGEMN QLWETT++P TR++++V I DA +AD+LF LMG V Sbjct: 562 GLNGNRSKAIIQRYKGLGEMNPEQLWETTMDPSTRTIMQVTIEDAVKADELFDMLMGSNV 621 Query: 786 EPRREFIQENSLPS-ALDI 803 PR++FIQ ++ LDI Sbjct: 622 APRKKFIQSHAKSVRNLDI 640 >gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002] gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002] Length = 640 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 294/641 (45%), Positives = 405/641 (63%), Gaps = 10/641 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y A IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 2 TSNYSAQQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAGYCTEINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+DNGRGIP D+H G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 EINADGSVTVTDNGRGIPVDVHPSTGKSALETVMTVLHAGGKFGAGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+++ + R+ Y+ + G+ L + + +GT V FLP + IF+ Sbjct: 121 VVNALSEWVEVTVWRDETTYKQRYERGVPQGELTEAPAPQHLSGTSVCFLPDAKIFTETT 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+Y+TL RLREL++LN+ V+I D RS + T FY+GGI+ +V+Y++R K PL + Sbjct: 181 VFDYNTLAGRLRELAYLNAGVRIVFTDHRSEKQASNTYFYEGGIKEYVAYMNREKSPLHE 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + G ++ + +++A++W D Y +N+L F NNI DGGTHL GL+S LTR + + Sbjct: 241 EIIYVTGEKNGVQLEVALQWCTDAYSDNLLGFANNIRTVDGGTHLEGLKSVLTRTMNTVA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K + ++ G++ REG T+V+S+K+PDP F QTK KL +SEVR +V+SFV + L Sbjct: 301 RKRNKLKDNDSNLAGENIREGLTAVISVKVPDPEFEGQTKTKLGNSEVRGIVDSFVGEVL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + E + I++K + A +AARRAR+L RRK VL+ + LPGKLADCSERDP K Sbjct: 361 TEYFEFNLNVVDAILEKAIQAFKAAEAARRARELVRRKSVLESSLLPGKLADCSERDPAK 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LITALG G Sbjct: 421 TEIYLVEGDSAGGSAKQGRDRAFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I + F+ KLRYH+++IMTDADVDGAHIRTLLLTFF+R L+ G++YI PPLY + Sbjct: 481 IKGEEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIACPPLYKL 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 RGK+ Y + L+D + + + G + L + ++ + Sbjct: 541 ERGKNHAYCYSDRELQDQISQLPDNAKYNIQRFKGLGEMMPQQLWDT-----TMNPESRT 595 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + E I V + A +LN Sbjct: 596 LKRVEIEDAAEADRIFTVLMGDRV-APRREFIEMNAPKLNM 635 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + ++ +V V + F + + + + I + L Sbjct: 484 EEFNPEKLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYIYIACPPLYKLERG 543 Query: 711 GDKIKITGPCSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + L D I + ++QR+KGLGEM QLW+TT+NP++R+L RV+I Sbjct: 544 KNHAYCYSDRELQDQISQLPDNAK--YNIQRFKGLGEMMPQQLWDTTMNPESRTLKRVEI 601 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 DA++AD +F+ LMGD V PRREFI+ N+ LDI Sbjct: 602 EDAAEADRIFTVLMGDRVAPRREFIEMNAPKLNMDDLDI 640 >gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 633 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 282/590 (47%), Positives = 404/590 (68%), Gaps = 4/590 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+A IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE++ G+ I Sbjct: 1 MLEREYNASDIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVFEIVDNSIDEAVAGFCKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N D S TV D+GRGIP D+H GI A +VI+T LH+GGKF Y +SGGLHGVG Sbjct: 60 EVTINQDNSITVCDDGRGIPVDIHPAMGIPALQVILTTLHSGGKFGGSGYNISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS +++R+KR+G+IY+ + G N + + G + +TGT + F +IF Sbjct: 120 LSVVNALSRRMEVRVKRDGHIYQQDYERGNPVNEIRIIGESK-ETGTSICFFADDEIFEE 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F + L RLRELSFLN +++ISL D+R E Y G++ FV+Y++++K+ + Sbjct: 179 INFEREILLQRLRELSFLNRNLKISLRDEREEEVFYQEFHYSHGLKDFVAYINKNKEVIN 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +PI + +D++ + +A+++N+ Y EN+ F NNI ++GGTH G ++ALTR I Y Sbjct: 239 DNPIYFENKKDDVIVQVAIQYNNSYSENLYSFANNIRTQEGGTHEIGFKNALTRVINDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K+ K++ ++ G+D REG +++S+ + DP+F QTK KL ++ +R +VES V + + Sbjct: 299 KKNNILKENDNNLSGEDIREGIAAIISVLVKDPQFEGQTKTKLGNTYIRGIVESIVFEHV 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P A+ ++ K + A R+AA++AR+LTRRK L+ +LPGKLADCS ++P + Sbjct: 359 EDYLNENPAAARKLLDKAISARRAREAAKKARELTRRKNALESTALPGKLADCSNKNPAE 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LSS+EI LITA+GTG Sbjct: 419 SELFIVEGDSAGGSAKQGRDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FDI K RYHK+ IMTDADVDG+HIR LLLTFF+R M LI G+LYI +PPLYG+ Sbjct: 479 IGED-FDIKKARYHKLFIMTDADVDGSHIRVLLLTFFYRYMKELIEEGYLYIAQPPLYGL 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 RGK ++Y ++ L +L + G + L DA Sbjct: 538 KRGKEIKYFYNDADLNAFLSQTE-QKWSIQRYKGLGEMDPEQLWTTTMDA 586 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 21/273 (7%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I + + L + + +S+ I + D Sbjct: 377 ISARRAREAAKKARELTRRKNALESTALPGKLADCSNKNPAESELFIVEGDSAGGSAKQG 436 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + +E+A + V + E + + ++ + + + + K + Sbjct: 437 RDRTYQAILPLRGKILNVEKARLDRVLSSEEIRNLITAMGTGIGEDFDIKKARYHKLFIM 496 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNG 711 + + D R+ + +F +Y IEE YL L + G Sbjct: 497 TDADVDGSHIRV-------------LLLTFFYRY---MKELIEEGYLYIAQPPLYGLKRG 540 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 +IK + L+ S + S+QRYKGLGEM+ QLW TT++ ++R++L+V I DA Sbjct: 541 KEIKYFYNDADLNAFLSQTEQKWSIQRYKGLGEMDPEQLWTTTMDAESRTVLKVTIEDAI 600 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +A+D+FS LMGD V+PRREFI+ N+ LDI Sbjct: 601 KANDIFSALMGDNVQPRREFIESNARYVANLDI 633 >gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM 17393] gi|189438338|gb|EDV07323.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM 17393] Length = 653 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 279/604 (46%), Positives = 391/604 (64%), Gaps = 17/604 (2%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ N + +Y A++IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEQINSNSGNYSAENIQVLEGLEAVRKRPAMYIGDIS-TKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G P+ G + TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYPVKEIG-TSDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233 + IF+ +NY+ L R+REL++LN+ ++I+L D R + + + + G++ FV Sbjct: 179 DNTIFTDTVYNYEILATRMRELAYLNAGIKITLTDLRVKDEENNAKMEIFYSEEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I I + +++A+ +N Y+EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y + + +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 RALTRTLKKYADDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK++V KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALNYYLEEHPKEAKMVVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVNTEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I NG+LYI PPLY +GK +Y ++ + ++ E + G ++ Sbjct: 539 IRNGYLYIATPPLYLCKKGKVEEYCWTDQQRQKFIDTYGGGSESAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L + Sbjct: 599 QLWS 602 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 36/66 (54%), Positives = 51/66 (77%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLW TT+NP+ R L ++ I +A++ D +FS LMG++V PRREFI++N+ Sbjct: 587 QRYKGLGEMNPEQLWSTTMNPENRMLKQISIENAAEVDYIFSMLMGEDVGPRREFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM 18228] gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM 18228] Length = 656 Score = 624 bits (1609), Expect = e-176, Method: Composition-based stats. Identities = 286/606 (47%), Positives = 390/606 (64%), Gaps = 18/606 (2%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + + +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEELTPNSGSNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFL 176 GGLHGVGVS VNALS+ + + R G +Y+ + G P+ G A TGT TF Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRGGKVYQQEYECGKPLYPVKEVGTCAPGMTGTRQTFW 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232 P +IF+V ++ Y LQ R+REL++LN + I+L DKR E ++ + G++ F Sbjct: 180 PDGNIFTVTEYKYSILQARMRELAYLNKGITITLTDKRVKEEDGSFKQEVFHSEEGVKEF 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +L+ PL+ I + + I I+ A+ +N G+ EN+ + NNI +GGTH +G Sbjct: 240 VRFLNSTNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALTR + Y E+S +K K + G+D REG +V+S+K+ +P+F QTK KL ++EV Sbjct: 300 RTALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEV 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 360 SGAVNQAVGEALTYYLEEHPKEAKVIVDKVVLAATARIAARKARESVQRKSPMGGGGLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS R+P++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K S Sbjct: 420 KLADCSSRNPEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESD 479 Query: 473 EIGTLITALGTGIGQDSF------DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 E+ +I ALG G D +I+KLRY+KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 480 EVNNIIQALGIRFGVDGDEDSKKANIDKLRYYKIIIMTDADVDGSHIDTLIMTLFYRYMP 539 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVIS 583 +I G LYI PPLY ++GK +Y +E + ++ E G ++ Sbjct: 540 EVIQGGHLYIATPPLYKCSKGKISEYCYTDEERQAFMQKYGDGSENGIHTQRYKGLGEMN 599 Query: 584 KNDLRN 589 L Sbjct: 600 PEQLWE 605 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 43/73 (58%), Positives = 56/73 (76%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GI QRYKGLGEMN QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRR Sbjct: 583 SENGIHTQRYKGLGEMNPEQLWETTMNPETRMLKQVHIENAAEADYIFSMLMGDDVAPRR 642 Query: 790 EFIQENSLPSALD 802 EFI++N+ + +D Sbjct: 643 EFIEKNATYANID 655 >gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135] gi|198272789|gb|EDY97058.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM 17135] Length = 654 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 285/605 (47%), Positives = 386/605 (63%), Gaps = 18/605 (2%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + + +Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEELTQNSGSNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + + R G IY+ + G + G + TGT TF P Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRNGKIYQQEYECGKPLYAVKEVG-TTDITGTRQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233 IF+V ++ Y LQ R+REL++LN + I+L DKR E ++ + G++ FV Sbjct: 179 DGSIFTVTEYKYSILQARMRELAYLNKGITITLTDKRVKEEDGSYKQEKFHSEEGVKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ + PL+ I + + I I+ A+ +N G+ EN+ + NNI +GGTH +G R Sbjct: 239 RFLNSNNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E+S +K K + G+D REG +V+S+K+ +P+F QTK KL ++EV Sbjct: 299 MALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNNEVS 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V V + L+ +LEEHP EAKIIV KV+ A+ R AAR+AR+ +RK + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKIIVDKVVLAATARVAARKARESVQRKSPMGGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R ++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSRVAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ALG G +I+KLRYHK+IIMTDADVDG+HI TL++T F+R MP Sbjct: 479 VNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584 +I G LYI PPLY ++GK +Y +E+ + ++ E G ++ Sbjct: 539 VIQGGHLYIATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQRYKGLGEMNP 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 5/184 (2%) Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSI 682 + + + ++ L R E+ K + ++ V + Sbjct: 471 HKAFESDEVNNIIQALGVRFGVDGEEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMT 530 Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IG-RKGISMQR 738 + + I + L G + G +GI QR Sbjct: 531 LFYRYMPEVIQGGHLY-IATPPLYKCSKGKISEYCYTDEARQAFIQKYGEGNEQGIHTQR 589 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI++N+ Sbjct: 590 YKGLGEMNPEQLWETTMNPETRILKQVNIENAAEADYIFSMLMGDDVGPRREFIEKNATY 649 Query: 799 SALD 802 + +D Sbjct: 650 ANID 653 >gi|126662002|ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38] gi|126625381|gb|EAZ96070.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38] Length = 646 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 287/598 (47%), Positives = 387/598 (64%), Gaps = 12/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + SY ADSIQ L+G++ V+ RPSMYIGDT G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEENKKGSYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTIYVAINEDNSITVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L+ + REG +YE + G P+ G GT VTF P + Sbjct: 120 HGVGVSCVNALSDHLRATVYREGKVYEQEYERGKAMYPVKQIG-TTEKRGTMVTFKPDAT 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF+ +++YDTL RLRELSFLN + I+L DKR T K G++ FV + Sbjct: 179 IFTQTLEYSYDTLASRLRELSFLNKGITITLTDKRHLAEDGSQPVETFHSKEGLKEFVKF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++P++ I ++ + I +++A+ +N Y EN+ + NNI +GGTHL G R Sbjct: 239 LDGNREPIISHVISMEHEKSEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRMG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTRTLKKYADSSGLLDKLKFEISGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVVSP 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L +LEE+P +AKIIV+KV+ A+ R AA++AR++ +RK V+ LPGKL+ Sbjct: 359 VSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSEQDPAKCEIFLVEGDSAGGTAKQGRDRFFQAILPLRGKILNVEKAMQHKVFENEEIR 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG KLRYHK++IM DADVDG+HI TL+LTFFFR M LI Sbjct: 479 NIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKELIEK 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI PPLY + +G +Y ++ + + G ++ L + Sbjct: 539 GHVYIAAPPLYLVKKGNKKEYAWNDVQRD-VANERMGGSAAIQRYKGLGEMNAEQLWD 595 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQR 738 I +F +Y + + L L+ G+K + + + + G ++QR Sbjct: 523 LILTFFFRYMKELIEKGHVYIAAPPLYLVKKGNKKE-YAWNDVQRDVANERMGGSAAIQR 581 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLW+TTLNP+ R+ +V I ++AD +FS LMGDEV PRREFI++N+ Sbjct: 582 YKGLGEMNAEQLWDTTLNPENRTFRQVTIDSLAEADRVFSMLMGDEVPPRREFIEKNASY 641 Query: 799 SALD 802 + +D Sbjct: 642 AKID 645 >gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme DSM 15981] gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme DSM 15981] Length = 638 Score = 623 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 293/584 (50%), Positives = 400/584 (68%), Gaps = 4/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I VT Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIEVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV D+GRGIP + K+ G+ A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INEDNSITVIDDGRGIPVGIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186 VNALS WL++++ +GNIY+ + G + PL + G ++ GT V FLP +IF + Sbjct: 122 VNALSEWLEVQVYLDGNIYQQRYERGKVMYPLKIVGKCEPHEHGTHVRFLPDKEIFEETE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+YDTL+ RLRE +FL +++I+L D R E +E T Y+GGI FV+YL++ K PL + Sbjct: 182 FDYDTLKIRLRETAFLTKNLKITLRDDREEEVKEKTFHYEGGIREFVAYLNKGKTPLYEQ 241 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G+R+ + ++++++ ND Y E + F NNI +GGTHL+G ++ALT+ Y K Sbjct: 242 VIYCEGTREGVYVEVSLQHNDSYTEGIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 301 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K+++ S+ G+D REG T+++S+K+ DP+F QTK+KL +SE R+ V++ V++ L+ Sbjct: 302 NKLLKENEDSLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARTAVDNVVSEQLTY 361 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AK I +K + A R AAR+ARDLTRRK LD +LPGKLADCS+++P E Sbjct: 362 FLEQNPSVAKSICEKSILAQRARAAARKARDLTRRKSALDGVALPGKLADCSDKNPVNCE 421 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++ + EI +ITA GTGI Sbjct: 422 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGIH 481 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + + Sbjct: 482 ED-FDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKVEK 540 Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 K + Y +E L L + G + L Sbjct: 541 NKRIWYAYSDEELNSILTDVGRDGNNKIQRYKGLGEMDAEQLWE 584 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 478 TGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 537 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + +I L + +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 538 VEKNKRIWYAYSDEELNSILTDVGRDGNNKIQRYKGLGEMDAEQLWETTMDPERRILLRV 597 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 598 TMDDETQSELDLTFTTLMGDQVEPRREFIESNAKRVQNLDI 638 >gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC 43183] gi|167698263|gb|EDS14842.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC 43183] Length = 653 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 279/604 (46%), Positives = 388/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + S+Y A +IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEEKINGESNYSASNIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G+ TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVGTTAI-TGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233 + IF+ ++YD L R+REL++LN+ ++I+L D + ++ + G++ FV Sbjct: 179 DATIFTETVYSYDILATRMRELAYLNAGIKITLTDLRVKEEDGSYKQEVFYSVEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I I + +++A+ +N Y+EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + LS +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALSYYLEEHPKEAKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I G+LYI PPLY T+GK +Y ++ + ++ E + G ++ Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 52/66 (78%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|312143598|ref|YP_003995044.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311904249|gb|ADQ14690.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 636 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 285/589 (48%), Positives = 399/589 (67%), Gaps = 5/589 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Y+AD IQ+LKGL+AV+KRP MYIG T G GLHH+++EV+DN+IDE L GY Sbjct: 1 METLFDKTDYNADQIQVLKGLEAVRKRPGMYIGST-GIKGLHHLVWEVVDNSIDEFLAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ + TV D GRGIP D+HK+ G+ A +V++T LHAGGKFN SYKVSGGL Sbjct: 60 GDEIKVTIHENNEITVEDYGRGIPADIHKDSGLPAVQVVLTTLHAGGKFNNNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L L EGN Y F G+ + L G +GT + F SD Sbjct: 120 HGVGVSVVNALSEKLVLTTHWEGNKYRQVFKKGVPTSKLEKLGKTK-RSGTVIRFKADSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ +D+ ++ L HRL+E ++LN + + LID+R ++ Y GGI+AFV +L++ + Sbjct: 179 IFAARDYKFENLAHRLQESAYLNKDLTLILIDERGEGEKKKVFQYDGGIKAFVEFLNKDR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I + ++ +++A+++NDGY+E + + NNI DGG HL+G ++ALTR I Sbjct: 239 NVINEDIIYFESKPEDYEVEMAIQYNDGYNERIYSYANNINTIDGGYHLTGFKTALTRAI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++ + + S+ G D REG T+++++K+P+P+F QTK KL +SE+RS+VES V Sbjct: 299 NNFAKNNNRLPAKISSLRGKDVREGITAIINVKLPEPQFEGQTKTKLGNSELRSIVESEV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS + + +P A ++ K + A R A+++AR+LT+RK L+ +LPGKLADCS + Sbjct: 359 YEYLSLYFDTNPDLANKVIDKAVQAVRARKASKKARELTKRKSALNSNALPGKLADCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +KSELF+VEGDSAGGSAKQGR R QAILPL+GKILNVERAR DK+L++ EI ++ITA Sbjct: 419 KAEKSELFIVEGDSAGGSAKQGRDRNFQAILPLKGKILNVERARLDKILNNTEIASIITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D F+I LRYHKIIIMTDADVDGAHI TL+LT F+R MP LI G++Y+ KPP Sbjct: 479 LGAGIGED-FNIKNLRYHKIIIMTDADVDGAHIATLILTLFYRYMPELIEEGYIYLAKPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY ++RGKS +Y+ ++ L +Y G ++ L + Sbjct: 538 LYKVSRGKSTKYLYSDQELAEYKKKH--ENFSLQRYKGLGEMNPRQLWD 584 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 30/199 (15%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672 +E+A + + N I +L + + N + K ++ V Sbjct: 458 VERARLDKILNNTEIASIITALGAGIGEDFNIKNLRYHK-----------IIIMTDADVD 506 Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIK-ITGPCSLLDTIF 727 + + I + +Y IEE Y+ L + G K + L + Sbjct: 507 GAHI--ATLILTLFYRY---MPELIEEGYIYLAKPPLYKVSRGKSTKYLYSDQELAEY-- 559 Query: 728 SIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 +K S+QRYKGLGEMN QLW+TT++P+ R LLRV+I D +ADD+F+RLMG Sbjct: 560 ---KKKHENFSLQRYKGLGEMNPRQLWDTTMDPENRVLLRVEIDDDFEADDIFTRLMGSN 616 Query: 785 VEPRREFIQENS-LPSALD 802 R+EFI N+ L +D Sbjct: 617 ASLRKEFIFNNAELVQTID 635 >gi|72388567|gb|AAZ67927.1| DNA gyrase subunit B [Psychrobacter frigidicola] Length = 731 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 323/733 (44%), Positives = 448/733 (61%), Gaps = 53/733 (7%) Query: 42 HHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMT 101 HHM++EV+DN+IDE+L G+ D I + ++ D S +VSDNGRG+P D+H EEG+SAA+VIMT Sbjct: 1 HHMVFEVVDNSIDEALAGHCDRIDIVIHDDESVSVSDNGRGVPVDIHPEEGVSAAQVIMT 60 Query: 102 RLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV 161 LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y+ ++ +G+ D + Sbjct: 61 VLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYQQTYTDGVPDGDIQP 120 Query: 162 TGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI 221 A + TGT++ F PS+D+F+ F YD L RLRELSFLNS V+I L D+R + E Sbjct: 121 I-EATDRTGTQIRFYPSTDVFTGTIFEYDILAKRLRELSFLNSGVRIILTDERIDKRHE- 178 Query: 222 TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIP 281 +KGG+ FVSY++ K + + + D IS+++A++W D Y+E VLCFTNNIP Sbjct: 179 -FEHKGGLSEFVSYINAGKDGVNEVFHFVSEQADGISVEVALQWTDTYNEKVLCFTNNIP 237 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 Q+DGGTHLSG RSALTR + +Y+++ KK+K GDD REG T+++S+K+PDP+FSS Sbjct: 238 QRDGGTHLSGFRSALTRCLNTYMDRENLFKKEKIVATGDDAREGLTAIVSVKVPDPKFSS 297 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK+KLVSSEV+S VES ++D + +L+E+P K+I K++DA+ RDAAR+AR++TRR Sbjct: 298 QTKDKLVSSEVKSAVESAMHDKFNDYLQENPGAGKLIAGKIIDAARARDAARKAREMTRR 357 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 K LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVE Sbjct: 358 KTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVE 417 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 RARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTL +TFF Sbjct: 418 RARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLKMTFF 477 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ + Sbjct: 478 FRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHVSAAAPA 537 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLA 639 I+ L ++D + + + ++ + + + + L Sbjct: 538 ITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLTTDMTYDLSAMQAWKDTLQ 597 Query: 640 NRLNFIAE---------------------------------KSEKSWHGSINNSD----- 661 +L + E + G S+ Sbjct: 598 TQLEHFGSDLHPEIELVNIHAPTPKVIDAVTADLMGMKPQPEPELTIEGETETSNSDMLS 657 Query: 662 ------ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---- 711 + + ++L+ S I S S+ + + Sbjct: 658 TKAQWLPRITVYVHQLAHNYLLDASFINSGEYARLLRLSSEWNTLLADSAFIRRDSTSAT 717 Query: 712 DKIKITGPCSLLD 724 +I I L Sbjct: 718 KEIPIRDFDFLWQ 730 >gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC BAA-613] gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC BAA-613] Length = 637 Score = 623 bits (1607), Expect = e-176, Method: Composition-based stats. Identities = 288/584 (49%), Positives = 396/584 (67%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I VT Sbjct: 3 EQYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDSIDVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV D+GRGIP D+ K+ G+ A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INEDNSITVMDDGRGIPVDIQKKAGLPAVEVVFTILHAGGKFGNGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186 VNALS WL++++ ++GNIY+ + G + PL + G GT VTFLP +IF Sbjct: 122 VNALSEWLEVQVYKDGNIYQQRYERGKVTYPLKIVGKCGPEQHGTRVTFLPDKEIFEETV 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I L D R + ++ Y+GGI+ FV+YL++ K P+ Sbjct: 182 YDYDTLKIRLRETAFLTKNLKIILKDDRDEKKEKV-FHYEGGIKEFVTYLNKGKTPIYDQ 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G+R+ + ++++M+ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y + Sbjct: 241 VIYCEGTREGVYVEVSMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARE 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R+ V++ V++ L+ Sbjct: 301 KKLLKDSEDNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVDNIVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AK + +K + A R AAR+ARDLTRRK LD +LPGKLADCS+++P+ E Sbjct: 361 FLEQNPAVAKSMCEKSILAQRARAAARKARDLTRRKSALDGMALPGKLADCSDKNPENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++ + EI +ITA GTGI Sbjct: 421 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARMDRIYGNAEIKAMITAFGTGI- 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + + Sbjct: 480 HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKVEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 K + Y ++ L L G + L Sbjct: 540 NKKVWYAYSDDELNSILKEIGRDNSNKIQRYKGLGEMDAEQLWE 583 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G ++ DI R + + ++G+ I + + R I++ Y L Sbjct: 477 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 536 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L++I GR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 537 VEKNKKVWYAYSDDELNSILKEIGRDNSNKIQRYKGLGEMDAEQLWETTMDPERRILLRV 596 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 597 TMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKKVKNLDI 637 >gi|86141195|ref|ZP_01059741.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217] gi|85831754|gb|EAQ50209.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217] Length = 646 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 284/601 (47%), Positives = 397/601 (66%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEEANKKQYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N + S +V DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDSIKVIINENNSISVKDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ LK + R+G I+E + G P+ G +D GT VTFLP Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGKIWEQEYEKGKAMYPVKGIGDT-DDRGTAVTFLPDPS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF +NYDTL R+REL++LN ++ISL DKR + T + G++ FV + Sbjct: 179 IFQTTTEYNYDTLASRMRELAYLNKGIKISLTDKRQKDEKGDFVSETFHSEEGLKEFVRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++P++ I ++G +++I +++AM +ND Y EN+ + NNI +GGTHL+G R Sbjct: 239 LDGNRQPIIGEVISMEGEKNDIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTSSLKKYADASGMLDKLKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ + +LEEHP +AK IV+KV+ A+ R AA++AR++ +RK V+ I LPGKLA Sbjct: 359 VSQAVSEMVEIYLEEHPDDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP+ E+FLVEGDSAGG+AK GR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSETDPEACEVFLVEGDSAGGTAKMGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRY KI+IM DADVDG+HI TL+LTFFFR M L+ Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYKKIVIMCDADVDGSHIATLILTFFFRYMRELVEG 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +GK ++Y E+ ++Y S ++ + + ++ + Sbjct: 539 GHVYIATPPLYLLKKGKKMRYAWSEKERDEYNAQMGGSVSVQRYKGLGEMNAEQLWDTTM 598 Query: 592 D 592 + Sbjct: 599 N 599 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 59/70 (84%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +S+QRYKGLGEMNA QLW+TT+NP+ R+L +V I + ++AD +FS LMGDEV PRREFI+ Sbjct: 577 VSVQRYKGLGEMNAEQLWDTTMNPEFRTLRQVTIDNGTEADRIFSMLMGDEVPPRREFIE 636 Query: 794 ENSLPSALDI 803 +N++ + +D+ Sbjct: 637 KNAVYANIDV 646 >gi|150010130|ref|YP_001304873.1| DNA gyrase subunit B [Parabacteroides distasonis ATCC 8503] gi|149938554|gb|ABR45251.1| DNA gyrase, B subunit [Parabacteroides distasonis ATCC 8503] Length = 651 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK ++R G ++ F G + + V + TGT ++F P Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+V ++ YD L RLREL+FLN+ + + L DKR + + G++ FV Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++A+ +N Y+E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK L LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDASICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G +G + ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y E+ + +++ E + G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ +F E Q I ++ + + A EK + + I+ Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718 + L + F R + IE Y+ L L G + Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I G I QRYKGLGEMN QLW+TT+NP+ R+L ++ I +A++AD Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMG++V PRREFI+EN+ + +D Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650 >gi|256838953|ref|ZP_05544463.1| DNA gyrase, B subunit [Parabacteroides sp. D13] gi|262382583|ref|ZP_06075720.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B] gi|256739872|gb|EEU53196.1| DNA gyrase, B subunit [Parabacteroides sp. D13] gi|262295461|gb|EEY83392.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B] Length = 651 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK ++R G ++ F G + + V + TGT ++F P Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+V ++ YD L RLREL+FLN+ + + L DKR + + G++ FV Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++A+ +N Y+E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK L LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G +G + ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y E+ + +++ E + G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ +F E Q I ++ + + A EK + + I+ Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718 + L + F R + IE Y+ L L G + Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I G I QRYKGLGEMN QLW+TT+NP+ R+L ++ I +A++AD Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMG++V PRREFI+EN+ + +D Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650 >gi|301308180|ref|ZP_07214134.1| DNA gyrase, B subunit [Bacteroides sp. 20_3] gi|300833650|gb|EFK64266.1| DNA gyrase, B subunit [Bacteroides sp. 20_3] Length = 651 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 292/602 (48%), Positives = 400/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK ++R G ++ F G + + V + TGT ++F P Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+V ++ YD L RLREL+FLN+ + + L DKR + + G++ FV Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEIFHSDEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++A+ +N Y+E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK L LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G +G + ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y E+ + +++ E + G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ +F E Q I ++ + + A EK + + I+ Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718 + L + F R + IE Y+ L L G + Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I G I QRYKGLGEMN QLW+TT+NP+ R+L ++ I +A++AD Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMG++V PRREFI+EN+ + +D Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650 >gi|294102629|ref|YP_003554487.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261] gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261] Length = 634 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 298/645 (46%), Positives = 407/645 (63%), Gaps = 14/645 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y A IQ+L+GL AV+KRP MYIGDT G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MT--TSAKQYTAKDIQVLEGLQAVRKRPGMYIGDT-GPRGLHHLVYEVVDNSIDEAIAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V + D S +V+DNGRGIPT+ H G A+EV++T LHAGGKF+ ++YKVSGGL Sbjct: 58 CDKISVVIYEDESVSVADNGRGIPTEPHPSSGRPASEVVLTILHAGGKFDNQAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ I+R G F G+ L G TGT V F P + Sbjct: 118 HGVGVSVVNALSEWLEITIQRNGLSRTQRFERGVPVTDLSE-GEPSTKTGTYVRFHPDTT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ D L RLRE++FLN + I+L D RS + + Y+GGI+ F+ YL++ K Sbjct: 177 IFEEVRFSADILSGRLREMAFLNPGLAITLEDHRSGK--CVEFHYEGGIKTFIEYLNKGK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL PI I G +D S+++ +++NDGY E + F N I +GGTH++G R+ALTR + Sbjct: 235 TPLFPEPIVIAGEKDGASVEIGIQYNDGYLERIFAFANMIHTIEGGTHVAGFRTALTRAV 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++ ++ ++ G+D +EG T VLSIK+ +P+F QTK KL +SE++ + +S V Sbjct: 295 NEVARRAKILREKDENLSGEDLKEGLTCVLSIKLSNPQFEGQTKTKLGNSEIKGITDSVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GL A+L+EH K +V+K + A RDAA++AR+L RK + +LPGKLADCS R Sbjct: 355 YEGLLAYLDEHQEVLKPVVEKAIRARQARDAAKKARELV-RKTAMTGMNLPGKLADCSSR 413 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+ARFDK+LS+ EI T+I A Sbjct: 414 DPHVCEVYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNVEKARFDKVLSNNEIRTIIQA 473 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D FD +KLRY+KIIIMTDADVDGAHI TLLLTFF+R M LI G LY+ +PP Sbjct: 474 LGCGIGED-FDHSKLRYNKIIIMTDADVDGAHISTLLLTFFYRYMQDLIDKGHLYLAQPP 532 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + RGK++ Y E+ L D + + S G ++ + L +D Sbjct: 533 LYRVQRGKNVTYCYSEKELRDIVDSTPDSRRASVQRYKGLGEMNPDQLWET-----TMDP 587 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + + + + +A+ N Sbjct: 588 QNRVLKRIEVEDAMLADEYFSILMGDKVEPRRDFIAAHAHEVRNL 632 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V +++ + + + + S + ++ V + Sbjct: 450 ILNVEKARFDKVLSNNEIRTIIQALGCGIGEDFDHSKLRYNKIIIMTDADVDGAHISTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738 F + I + + + + L D + S R+ S+QR Sbjct: 510 LTFFYRYMQDLIDKGHLYLAQPPLYRVQRGKNVTYCYSEKELRDIVDSTPDSRR-ASVQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P R L R+++ DA AD+ FS LMGD+VEPRR+FI ++ Sbjct: 569 YKGLGEMNPDQLWETTMDPQNRVLKRIEVEDAMLADEYFSILMGDKVEPRRDFIAAHAHE 628 Query: 799 S-ALDI 803 LDI Sbjct: 629 VRNLDI 634 >gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056] gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056] Length = 653 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 279/604 (46%), Positives = 387/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + S+Y A +IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEEKINGESNYSASNIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVG-TTDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233 IF+ +NYD L R+REL++LN+ ++I+L D + ++ + G++ FV Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKITLTDLRVKEEDGSYKQEIFYSVEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I I + +++A+ +N Y+EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + LS +LEEHP E+K+IV KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I G+LYI PPLY T+GK +Y ++ + ++ E + G ++ Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 52/66 (78%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|193211690|ref|YP_001997643.1| DNA gyrase subunit B [Chlorobaculum parvum NCIB 8327] gi|193085167|gb|ACF10443.1| DNA gyrase, B subunit [Chlorobaculum parvum NCIB 8327] Length = 647 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 284/593 (47%), Positives = 402/593 (67%), Gaps = 10/593 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + Y A +IQ+L G++ V+KRP+MYIGD GLHH++YE++DN+IDE+L G+ Sbjct: 8 TAQNAANDYGATNIQVLDGIEHVRKRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLAGFN 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V +N DGS TV+D GRGIP D+H + SA E++MT + AGGKF++ +YKVSGGLH Sbjct: 67 DYIHVAMNPDGSVTVTDRGRGIPVDIHPVKKKSALELVMTVIGAGGKFDKGAYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS W + + R+G I+ ++ G+ + G + GT+VTF P DI Sbjct: 127 GVGASVVNALSEWCEAEVYRDGKIFRQTYKRGVPQGGVEEVG-TTDQKGTKVTFKPDPDI 185 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F + +F D + R+REL+FLNS+++I + + E E T ++GG+ FV + D ++ Sbjct: 186 FKITEFRKDIIIDRMRELAFLNSNLRIIV---QDAEGFEETFHFEGGLREFVRFTDANRL 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L++ PI + G R++ +++A+++ND Y ENV + NNI +GGTH++G R ALTR + Sbjct: 243 SLLKEPIFLSGERESTMVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y +K+ K K ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE +S+VE+ VN Sbjct: 303 AYAQKNDLLKNVKITLTGDDFKEGLTAVISVKVPEPQFEGQTKTKLGNSETQSIVETIVN 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ + E +P K+I++KV A++ R+AAR+A++LTRRK VL+ + LPGKLADCS D Sbjct: 363 EQLAEFAESNPGTLKLIIEKVKGAAISREAARKAKELTRRKSVLESSGLPGKLADCSIND 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I AL Sbjct: 423 PDHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G ++I +PPL Sbjct: 483 GTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 542 Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 Y + G+ QY DEE + + + G ++ L + Sbjct: 543 YLVKAGREQQYAWDEEERASITEQMKKLQKGKANVSIQRYKGLGEMNPEQLWS 595 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 80/171 (46%), Gaps = 10/171 (5%) Query: 641 RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN 700 L E+ + ++ V + F F I + ++ Sbjct: 479 ILALGTSIGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-I 537 Query: 701 YLTILSLICNGDKIKIT-------GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWET 753 L L+ G + + + + G+ +S+QRYKGLGEMN QLW T Sbjct: 538 AQPPLYLVKAGREQQYAWDEEERASITEQMKKLQK-GKANVSIQRYKGLGEMNPEQLWST 596 Query: 754 TLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 T++P+ RSLL+V + +A +AD +FS LMGD+VEPRR FI++N+ LD+ Sbjct: 597 TMDPEHRSLLQVTVENAMEADQVFSTLMGDKVEPRRNFIEQNAKYVRRLDV 647 >gi|22298189|ref|NP_681436.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1] gi|22294368|dbj|BAC08198.1| DNA gyrase subunit B [Thermosynechococcus elongatus BP-1] Length = 640 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 278/634 (43%), Positives = 390/634 (61%), Gaps = 9/634 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y + +++LKGL+ V+ RP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 2 TAEYSSAQLRVLKGLEPVRTRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGYCSTILV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPTD+H + G+S E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 QINADGSVTVTDDGRGIPTDIHPDTGVSGVETVMTVLHAGGKFGDGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ + R G ++ + G+ PL T GT VTF P IF+ Sbjct: 121 VVNALSEWLEVTVWRNGFVHHQRYERGVPTTPLEKTPDTEERRGTSVTFFPDRQIFTETI 180 Query: 187 FNY-DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 L RLREL++LN+ ++I D R P T Y+GGI +V Y+ + K+PL Sbjct: 181 EFDAKVLMTRLRELAYLNAGIRIEFKDLRVTPPLSETYCYEGGIREYVRYMVQEKEPLHP 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I IQG +D++ ++ A++W D Y EN+L F NNI DGGTH+ GL++ LTR + + Sbjct: 241 EIIYIQGEKDDVQVEAALQWCADAYSENLLGFANNIRTIDGGTHMEGLKAVLTRTLNALG 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K++ ++ G++ REG T+++S+K+P+P F QTK KL ++EVR +V++ V L Sbjct: 301 RKRNKLKENNANLAGENIREGLTAIISVKVPNPEFEGQTKTKLGNTEVRGIVDAIVGAAL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L+ HP I++K + A +AARRAR++ RRK VL+ ++LPGKLADCS RDP Sbjct: 361 TEYLDFHPNVTDTILEKAIQAFNAAEAARRAREMVRRKSVLESSTLPGKLADCSSRDPAV 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + E+ +LITALG G Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 + + FD KLRYHKII+MTDADVDG+HIRTLLLTFF+R L++ GF+YI PPLY + Sbjct: 481 VKGEEFDPAKLRYHKIILMTDADVDGSHIRTLLLTFFYRYQQELVNQGFVYIACPPLYKV 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 RG+ Y + L+ + + + G + L ++ + Sbjct: 541 ERGRQHFYCYSDRELQQQIASFPENANYTIQRFKGLGEMMPEQLWET-----TMNPETRI 595 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + E I + + + + Sbjct: 596 LKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 629 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 8/130 (6%) Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDK-IKITGPCSLLDTIFSIGRK-GISMQ 737 + +F +Y++ N+ L + G + L I S ++Q Sbjct: 512 LLLTFFYRYQQELVNQGFVYIACPPLYKVERGRQHFYCYSDRELQQQIASFPENANYTIQ 571 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-- 795 R+KGLGEM QLWETT+NP+TR L RV+I DA++AD +F+ LMGD V PRREFI+ Sbjct: 572 RFKGLGEMMPEQLWETTMNPETRILKRVEIEDAAEADRIFTILMGDRVAPRREFIETYGP 631 Query: 796 --SLPSALDI 803 +L LDI Sbjct: 632 QLALE-NLDI 640 >gi|309389293|gb|ADO77173.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228] Length = 638 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 290/622 (46%), Positives = 404/622 (64%), Gaps = 8/622 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N Y+A+ IQ+LKGL+AV+KRP MYIG T G GLHH+++EV+DN+IDE L G Sbjct: 1 METLFENKDYNANQIQVLKGLEAVRKRPGMYIGST-GIKGLHHLVWEVVDNSIDEFLAGN 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ TV D GRGIP D H+E G+ A +V++T LHAGGKFN SYKVSGGL Sbjct: 60 GDQIKVTIHQGEEITVEDFGRGIPADTHQETGLPAVQVVLTTLHAGGKFNNSSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L++ EG+ Y+ + G + L G +GT + F P S+ Sbjct: 120 HGVGVSVVNALSSELEITTHWEGHKYQQHYKKGAPVDKLKKIGKTE-RSGTIIRFKPDSE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ ++F ++ L HRL+E ++LN + +SL D+R E E Y GGI+AFV +L++ + Sbjct: 179 IFTAREFKFENLAHRLQESAYLNKELTLSLRDERGEEVVEKEFQYDGGIKAFVEFLNKDR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I + D+ +++A+++NDGY+E + + NNI DGG HL+G ++ALTR + Sbjct: 239 NIINNDIIYFESKPDDYEVEIAVQYNDGYNERIFSYANNINTIDGGYHLTGFKTALTRAV 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++ + + S+ G D REG T+V+++K+P+P+F QTK KL +SE+RS+VES V Sbjct: 299 NNFAKNNNKLPAKISSLNGKDVREGITAVINVKLPEPQFEGQTKTKLGNSEIRSIVESEV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 LS + + +P AK I+ K + A R A+++AR+LT+RK L SLPGKLADCS + Sbjct: 359 YQYLSLYFDTNPDLAKKIIDKAVQAVRARKASKKARELTKRKTALSSNSLPGKLADCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 ++SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVERAR DK+L++ E+ +ITA Sbjct: 419 KSEESELFIVEGDSAGGSAKQGRERKFQAILPLKGKILNVERARLDKILNNNEVAAIITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG+D F++ KLRYHKI+IMTDADVDGAHI TL+LT F+R MP LI NG +Y+ KPP Sbjct: 479 LGAGIGED-FNLEKLRYHKIVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY +T+ K Y+ +++LE + S G ++ L A +D Sbjct: 538 LYKVTKRKKSHYLYSDQALETFRKENENSSFSLQRYKGLGEMNPEQLW-----ATTMDPQ 592 Query: 601 IKDFYPNHDKTFIEQAVISGVF 622 + IE I Sbjct: 593 NRVLQKVEIDDKIEADDIFTRL 614 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 94/263 (35%), Gaps = 14/263 (5%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 ++ + + L + + +S+ I + D + K Sbjct: 388 KASKKARELTKRKTALSSNSLPGKLADCSSKKSEESELFIVEGDSAGGSAKQGRERKFQA 447 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +E+A + + N I +L + + N + K Sbjct: 448 ILPLKGKILNVERARLDKILNNNEVAAIITALGAGIGEDFNLEKLRYHK----------- 496 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 +V V + + + I + I + + + Sbjct: 497 IVIMTDADVDGAHIATLILTLFYRYMPELIENGHIYLAKPPLYKVTKRKKSHYLYS-DQA 555 Query: 723 LDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L+T S+QRYKGLGEMN QLW TT++P R L +V+I D +ADD+F+RLM Sbjct: 556 LETFRKENENSSFSLQRYKGLGEMNPEQLWATTMDPQNRVLQKVEIDDKIEADDIFTRLM 615 Query: 782 GDEVEPRREFIQENS-LPSALDI 803 G R+EFI N+ L +D+ Sbjct: 616 GSNASLRKEFIFNNAELAQTIDV 638 >gi|257452986|ref|ZP_05618285.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|257466634|ref|ZP_05630945.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|315917788|ref|ZP_07914028.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] gi|317059526|ref|ZP_07924011.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|313685202|gb|EFS22037.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R] gi|313691663|gb|EFS28498.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563] Length = 638 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 271/586 (46%), Positives = 393/586 (67%), Gaps = 5/586 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A +I +L+GL+AV+KRP MYIG T GLHH+++EV+DN++DE+L GY + ITV+ Sbjct: 2 NNYGAQNITVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEVVDNSVDEALAGYCNTITVS 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D V DNGRGIP D+H + G SA E+++T LHAGGKF +YKVSGGLHGVG+SV Sbjct: 61 ILPDNIIQVEDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQ 185 VNALS W ++++KR+GN+Y ++ G + + AG+ TGT VTF P ++IF Sbjct: 121 VNALSEWTEIKVKRDGNVYYQKYLRGKPIEDVKIISSLEAGDTTGTTVTFKPDAEIFETV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ LQHRL+EL++LN ++I+L+D R+ ++ ++GGI F+ + + L+ Sbjct: 181 IFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKEKFQFEGGISDFLKEVTHENQVLLS 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I ++G + + +D+A + E + F NNI +GGTH++G R+ LT+ I + Sbjct: 241 KQIHVEGQAEQVGVDIAFTYTTSQSETIYSFVNNINTTEGGTHVTGFRTCLTKVINDIGK 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ + G D REG +++S+K+P P+F QTK KL +SEV +V S ++ L Sbjct: 301 SQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIVNSVLSVDLK 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P + K+I++K+L++ R+AA+RAR+ RK VL++ SLPGKLADCS + ++ Sbjct: 361 IFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKSEEC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+A K L S+EI ++TA GT I Sbjct: 421 EIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESEEIRAMVTAFGTNI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++SFD+NKLRY KII+MTDADVDGAHIRTL+LTF +R M LIHNG +YI +PPLY I+ Sbjct: 481 GEESFDLNKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYIAQPPLYKIS 540 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 GKS++Y + L++ L + + G ++ L Sbjct: 541 FGKSIRYAYTDAQLKEILQSVEGENKKYTLQRYKGLGEMNPEQLWE 586 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 105/268 (39%), Gaps = 12/268 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + F+ + K Sbjct: 376 KILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKSEECEIFLVEGDSAGGSAK 435 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQ-EINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + + N E + A F E+S+ + Sbjct: 436 QGRDRYFQAIL--PLKGKILNVEKAGLHKALESEEIRAMVTAFGTNIGEESFDLNKLRYG 493 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITG-- 718 ++ V + + I +F +Y + N L I G I+ Sbjct: 494 KIILMTDADVDGAHI--RTLILTFLYRYMVDLIHNGNVYIAQPPLYKISFGKSIRYAYTD 551 Query: 719 --PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L ++ +K ++QRYKGLGEMN QLWETT++P+ R LL+V I +A +AD L Sbjct: 552 AQLKEILQSVEGENKK-YTLQRYKGLGEMNPEQLWETTMDPEARLLLKVSIDNAREADML 610 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F +LMGD+VEPRREFIQE++ + +DI Sbjct: 611 FDKLMGDKVEPRREFIQEHAEYAKNIDI 638 >gi|313884315|ref|ZP_07818078.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620468|gb|EFR31894.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 639 Score = 621 bits (1602), Expect = e-175, Method: Composition-based stats. Identities = 293/590 (49%), Positives = 403/590 (68%), Gaps = 4/590 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ I+N+ Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MSEPIKNNGYNADQIQVLEGLEAVRKRPGMYIG-TTSIDGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + D S TV DNGRGIP D+ + G AAE + T LHAGGKF SYKVSGGL Sbjct: 60 CDHIEVFIEADNSITVIDNGRGIPVDIQSKTGRPAAETVYTVLHAGGKFGNDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG +VVNALS+ L L I REG I+ + F G++ L V G GT+V F+P Sbjct: 120 HGVGAAVVNALSTHLTLEIFREGKIHHLEFERGLVTKELEVIGETELV-GTKVNFVPDGT 178 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ DF Y+ L+ R++EL+FLN ++ISL DKR + FY+GG+++F+ +L+ Sbjct: 179 IFTDTTDFKYERLKDRIQELAFLNRGLRISLEDKREERQASDSFFYEGGLKSFIEHLNHA 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKPL + PI ++G D+I++++A+++ D Y N+L F NNI +GG H SG ++ALTR Sbjct: 239 KKPLHEEPIFLEGEMDDIAVEIALQYTDSYSTNLLSFANNIHTHEGGMHESGFKTALTRI 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K ++ G+D REG T+++S+K PDP+F QTK KL +SEVR++V+ Sbjct: 299 INDYARNNNLLKDSDDNLSGEDTREGLTAIISVKHPDPQFEGQTKTKLGNSEVRTIVDRL 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + +L E+P AKIIV+K + A+ R AA+RAR++TR+K L+IA+LPGKLADCS Sbjct: 359 FTAEFNTFLLENPRVAKIIVEKGILAARARSAAKRAREMTRKKSGLEIANLPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K ELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI ++ T Sbjct: 419 KEAEKCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKATMDRILANEEIRSMFT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G + FD+N +RYHK+IIMTDADVDGAHIRTLLLT FR M LI G++YI +P Sbjct: 479 AMGTGFGSE-FDVNNVRYHKLIIMTDADVDGAHIRTLLLTLIFRYMRPLIEAGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + GK Y+ +E L + + G + L Sbjct: 538 PLYQVKVGKKETYLDTDEELNKWRKANPDARYKLQRYKGLGEMDYEQLWE 587 Score = 159 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + + + + L+ V + Sbjct: 456 ILNVEKATMDRILANEEIRSMFTAMGTGFGSEFDVNNVRYHKLIIMTDADVDGAHIRTLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F I + + + + + + L + +QRYK Sbjct: 516 LTLIFRYMRPLIEAGYVYIAQPPLYQVKVGKKETYLDTDEELNKWRKANPDARYKLQRYK 575 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEM+ QLWETT+NP+ R LLRVK+ DA AD + S LMG++VEPRR FI++N++ Sbjct: 576 GLGEMDYEQLWETTMNPENRRLLRVKVEDAEVADQVMSMLMGEDVEPRRAFIEDNAVYVQ 635 Query: 800 ALDI 803 LD+ Sbjct: 636 NLDV 639 >gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136] gi|189430362|gb|EDU99346.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM 17136] Length = 654 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 282/605 (46%), Positives = 384/605 (63%), Gaps = 18/605 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + ++Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEELIPSSGNNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCTHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + + R G I++ + G + G + TGT TF P Sbjct: 120 GGLHGVGVSCVNALSTHMTTNVFRNGKIHQQEYACGKPLYAVKEVG-TTDITGTRQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFV 233 IF+ ++ Y+ LQ R+REL++LN + I+L DKR E ++ + G++ FV Sbjct: 179 DGSIFTTTEYKYNILQARMRELAYLNKGITITLTDKREKEEDGSFKQEIFHSEEGVKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ PL+ I + + I I+ A+ +N G+ EN+ + NNI +GGTH +G R Sbjct: 239 RFLNSTNTPLIDDVIYLNTEKQGIPIECAIMYNTGFRENLHSYVNNINTIEGGTHEAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + Y E+S +K K + G+D REG +V+S+K+ +P+F QTK KL ++EV Sbjct: 299 TALTRVLKKYAEESKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNNEVS 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR+ +RK + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKTIVDKVVLAATARIAARKARESVQRKSPMGGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R ++ ELFLVEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSRTAEECELFLVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ALG G +I+KLRYHK+IIMTDADVDG+HI TL++T F+R MP Sbjct: 479 VNNIIQALGVRFGVDGTEDSKKANIDKLRYHKVIIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584 +I G LYI PPLY ++GK +Y +E + ++ E G ++ Sbjct: 539 VIQGGHLYIANPPLYKCSKGKISEYCYTDEERQAFMQKYGDGTETGIHTQRYKGLGEMNP 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 56/70 (80%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 GI QRYKGLGEMN QLWETT+NP+TR L +V I +A++AD +FS LMGD+V PRREFI Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVSIENAAEADYIFSMLMGDDVAPRREFI 643 Query: 793 QENSLPSALD 802 ++++ + +D Sbjct: 644 EKHATYANID 653 >gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697] gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA] gi|217986143|gb|EEC52482.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM 20697] gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA] Length = 653 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 278/604 (46%), Positives = 386/604 (63%), Gaps = 17/604 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + ++Y A +IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYECGHPLYSVKEVGVTEI-TGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233 IF+ +NYD L R+REL++LN+ ++I+L D + ++ + G++ FV Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKITLTDLRVKEEDGNYKQEIFYSVEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ L+ I I + +++A+ +N Y+EN+ + NNI +GGTHL+G R Sbjct: 239 RYIDSSREHLVNDVIYINTEKQGTPVEVAIMYNTSYNENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + LS +LEEHP E+K+IV KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALSYYLEEHPKESKMIVDKVILAAQARVAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRTFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I G+LYI PPLY T+GK +Y ++ + ++ E + G ++ Sbjct: 539 IQQGYLYIATPPLYLCTKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 52/66 (78%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYTFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580] gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580] Length = 638 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 290/637 (45%), Positives = 416/637 (65%), Gaps = 13/637 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SY A++I +LKGLDAV+KRP MYIG T G GLHH++YEV+DN IDE++ GY D I Sbjct: 1 MTTPSYSAENITVLKGLDAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L + + V DNGRGIP D+H EEG+SA E+++TRLHAGGKF++ SYKVSGGLHGVG Sbjct: 60 LVVLEKNDTVRVEDNGRGIPVDIHPEEGVSALELVLTRLHAGGKFDKGSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALS+ ++ + R+G Y F G P+ G GT + + IF Sbjct: 120 VSVVNALSTSMEAIVCRDGFEYVQKFALGEPLGPVTKRGET-QKRGTTIRWTADPSIFTE 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N+D L RLREL+FLN++++I+L D+R P+E+T + GG+ FV YL+ K+ L Sbjct: 179 TTTYNFDVLAVRLRELAFLNNTIKITLRDERLSTPKEVTFAFDGGLSHFVRYLNESKQVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI +G ++++ +++AM++NDGY EN+L F N+I ++GGTHL G ++ALTR + + Sbjct: 239 PKEPIYFEGEKNDVVVEIAMQYNDGYKENILSFVNDINTREGGTHLEGFKTALTRVMNEF 298 Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++K+ + + ++G+D R G T+VLS+K+P+P+F QTK KL +SEVRS+V++F+ Sbjct: 299 LKKNAKLSKKMEKEEKLMGEDVRAGLTAVLSVKVPEPQFEGQTKTKLGNSEVRSIVDTFI 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ + E++P+E I++K + + R AAR+A++ TRRK LD LPGKLADCS + Sbjct: 359 NEKLTLFFEQNPIEIDKILEKAVGEATARIAARKAKEATRRKSGLDSFGLPGKLADCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP+K E+++VEGDSAGGSAK+GR + QAILPL GK+LNVE+ R DK+L+++++ +I Sbjct: 419 DPEKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLNNEKLQPIIAT 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D F+++K+RYHKIIIM DADVDG+HIRTLLLTFFFR MP LI +GF+Y+ PP Sbjct: 479 LGTGIGED-FNLDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPELIEHGFVYLAMPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDK 599 LY I+ K YV D+ + L S G + L +D Sbjct: 538 LYKISYNKKEWYVYDDSERDSILNEIGRSVSPAVQRYKGLGEMDGTQLWET-----TMDP 592 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +E I E + + Sbjct: 593 ARRKMMRVTLSDAVEADRIFSTLMGEEVEPRRKFIEE 629 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 43/82 (52%), Positives = 65/82 (79%), Gaps = 2/82 (2%) Query: 724 DTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 D+I + + +S +QRYKGLGEM+ +QLWETT++P R ++RV ++DA +AD +FS LM Sbjct: 557 DSILNEIGRSVSPAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLSDAVEADRIFSTLM 616 Query: 782 GDEVEPRREFIQENSLPSALDI 803 G+EVEPRR+FI+EN++ + LD+ Sbjct: 617 GEEVEPRRKFIEENAVYANLDV 638 >gi|83588881|ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073] gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073] Length = 634 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 299/637 (46%), Positives = 418/637 (65%), Gaps = 10/637 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YDA IQIL+GL+AV++RP MYIG+T G GLH +++E++DN+IDE+L G+ D I VT Sbjct: 6 NEYDASQIQILEGLEAVRRRPGMYIGNT-GVRGLHQLVFELVDNSIDEALAGFCDRIEVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ +GS TV+DNGRGIP D+H++ G+ A EV +T LHAGGKF YKV+GGLHGVG+SV Sbjct: 65 IHENGSLTVADNGRGIPVDIHEKTGLPAVEVALTILHAGGKFGGNGYKVAGGLHGVGLSV 124 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++++KR G IY + G + L V G TGT VTF P +IF F Sbjct: 125 VNALSEWLEIKVKRNGKIYHQEYRRGQKVSELKVIGKTK-GTGTSVTFYPDGEIFEDLVF 183 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + + RL+ELSFLN V+I D+R+ T ++ GG+ FV +L+++K L P Sbjct: 184 QDEIIGRRLQELSFLNRGVKIVFRDERNESET--TYYHTGGLIDFVRHLNKNKTVLFNKP 241 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + G +D++ ++A+++NDGY+E +L + NNI +GG+H G ++ALTR I Y + Sbjct: 242 LYFSGEKDDVQAEIAIQYNDGYNELILSYANNIHTVEGGSHEIGFKTALTRVINDYARRF 301 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K + ++ G+D REG T+V+S+K+ +P+F QTK KL ++EVR +V+S V + LSA+ Sbjct: 302 NLLKDAEANLSGEDIREGLTAVISVKVLEPQFEGQTKTKLGNTEVRGIVDSLVAENLSAY 361 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE+P + IV K L+A R+AAR+AR+LTRRK L+I SLPGKLADC+ +DP +EL Sbjct: 362 LEENPTIGRRIVDKALNAFRAREAARKARELTRRKNALEITSLPGKLADCTHKDPAMAEL 421 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI T+ITALGTGIG Sbjct: 422 FLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILNNEEIRTIITALGTGIG- 480 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D F+INK RYHK I+M DADVDG+HIRTLLLTFF+R M LI G++YI +PPLY + RG Sbjct: 481 DDFNINKARYHKTILMADADVDGSHIRTLLLTFFYRYMRPLITEGYIYIAQPPLYKVYRG 540 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 K +Y+ ++ LE +L G ++ L ++ + Sbjct: 541 KVERYLYNDAELEKFLKEHEGERWEIQRYKGLGEMNPEQLWET-----TMNPESRTLLQV 595 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + +E I + + + + N Sbjct: 596 NLEDAMEADAIFNILMGDRVEPRREFIQQHAHEVRNL 632 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 14/202 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N E + I +L + + + N + K+ + + Sbjct: 445 LPLRGKILNVEKARLDKILNNEEIRTIITALGTGIGDDFNINKARYHKTILMADAD---- 500 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V + F + I I + + + + L Sbjct: 501 -------VDGSHIRTLLLTFFYRYMRPLITEGYIYIAQPPLYKVYRGKVERYLYNDAELE 553 Query: 724 DTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + G + +QRYKGLGEMN QLWETT+NP++R+LL+V + DA +AD +F+ LMG Sbjct: 554 KFLKEHEGER-WEIQRYKGLGEMNPEQLWETTMNPESRTLLQVNLEDAMEADAIFNILMG 612 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D VEPRREFIQ+++ LDI Sbjct: 613 DRVEPRREFIQQHAHEVRNLDI 634 >gi|86132658|ref|ZP_01051251.1| DNA gyrase subunit B [Dokdonia donghaensis MED134] gi|85816900|gb|EAQ38085.1| DNA gyrase subunit B [Dokdonia donghaensis MED134] Length = 647 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 283/598 (47%), Positives = 391/598 (65%), Gaps = 11/598 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD+ Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSDDANKKQYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S TV DNGRGIP +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDAIDVTINEDNSITVRDNGRGIPVGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ LK + +EG ++E + G P+ G + TGTEVTF P Sbjct: 120 HGVGVSCVNALSNHLKATVYKEGKVWEQEYERGKALYPVKAIGDT-DFTGTEVTFTPDDS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF +NYDTL RLREL++LN + ++L DKR+ E T G+ FV + Sbjct: 179 IFQQTTEYNYDTLASRLRELAYLNKGITVTLTDKRNKKEDGEFENETFHSNEGLSEFVRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ P++ + I ++G ++ + +++AM +ND Y EN+ + NNI +GGTHL+G R Sbjct: 239 LDGNRNPIIGNVISMEGEKNGVPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + + + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V + + ++EE+P +AK IV+KV+ A+ R AA++AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQAVAEMIEIYMEENPNDAKTIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP E+FLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSETDPAVCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M L+ Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELVEK 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 GF+YI PPLY + +G+ QY D++ + G ++ L + Sbjct: 539 GFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERLGTQGVSIQRYKGLGEMNAEQLWD 596 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 2/124 (1%) Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQR 738 I +F +Y R + L L+ G K + D I +G +G+S+QR Sbjct: 523 LILTFFFRYMRELVEKGFVYIATPPLYLVKKGQKKQYAWDDKERDAIAERLGTQGVSIQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLW+TT+NP+ R+L +V I + ++AD +FS LMGDEV PRREFI++N++ Sbjct: 583 YKGLGEMNAEQLWDTTMNPEFRTLRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAIY 642 Query: 799 SALD 802 + +D Sbjct: 643 ANID 646 >gi|298374500|ref|ZP_06984458.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19] gi|298268868|gb|EFI10523.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19] Length = 651 Score = 621 bits (1601), Expect = e-175, Method: Composition-based stats. Identities = 292/602 (48%), Positives = 401/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I V +N D S TV+D+GRGIP D+H++EG SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCTYIDVVINEDNSITVTDDGRGIPVDIHEKEGKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK ++R G ++ F G + + V + TGT ++F P+ Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRNGKVHMQEFSCGKPLHDVQVI-DNTDKTGTTISFKPN 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+V ++ YD L RLREL+FLN+ + + L DKR + + G++ FV Sbjct: 179 GSIFTVTEYKYDILATRLRELAFLNAGITLRLTDKRVLKEDGSFKSEVFHSDEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++A+ +N Y+E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEKLIPDVIHIVTEKQGIPVEVALTYNTSYNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S +K K + GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKKYAEDSKLLEKAKVEIQGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK L LPGKL Sbjct: 359 AVDMAIGEALGYYLEEHPKEAKIIVDKVILAAQARHAARKARELVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDAAICELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKIFESEEI 478 Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G +G + ++ KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M SLI Sbjct: 479 QNIYRAMGVTVGTEDDPKALNMEKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRSLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y E+ + +++ E + G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTEQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ +F E Q I ++ + + A EK + + I+ Sbjct: 455 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718 + L + F R + IE Y+ L L G + Sbjct: 511 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 563 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I G I QRYKGLGEMN QLW+TT+NP+ R+L ++ I +A++AD Sbjct: 564 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMG++V PRREFI+EN+ + +D Sbjct: 624 IFAMLMGEDVGPRREFIEENATYANID 650 >gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46] gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343] gi|253564361|ref|ZP_04841818.1| subunit B [Bacteroides sp. 3_2_5] gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16] gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46] gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343] gi|251948137|gb|EES88419.1| subunit B [Bacteroides sp. 3_2_5] gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16] gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R] Length = 652 Score = 620 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 293/603 (48%), Positives = 398/603 (66%), Gaps = 16/603 (2%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G P+ G A + TGT+ F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-TGTKQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + T + + G+ FV Sbjct: 179 DDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + NI I++A+ +N G+ EN+ + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP+K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S+E Sbjct: 419 LADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEE 478 Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 13/204 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ E + I +L + + A +K + I Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 509 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722 + V + F F + I + + L L G KI+ Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KIEEYCWTDAQ 567 Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +DT I QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS Sbjct: 568 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 627 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMG++V PRREFI+EN+ + +D Sbjct: 628 MLMGEDVGPRREFIEENATYANID 651 >gi|227873174|ref|ZP_03991465.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] gi|227841005|gb|EEJ51344.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] Length = 654 Score = 620 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 280/584 (47%), Positives = 399/584 (68%), Gaps = 3/584 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G+ + ITV Sbjct: 19 SKEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNSVDEALAGFCNTITV 77 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ + S TV DNGRGIP D+ K+ G SA EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 78 KIHQNNSITVRDNGRGIPVDIQKKAGKSALEVVFTVLHAGGKFGGAGYKVSGGLHGVGAS 137 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185 VVNALS WL +++ +EG IY MSF G + P+ G+ + GTEV FLP + IF Sbjct: 138 VVNALSEWLDVKVYKEGKIYTMSFAKGKVTKPIECIGTCSEEEQGTEVHFLPDASIFEES 197 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++++TL+ RLRE +FL +++I L+D+R + +E Y+GGI+ FV++L++ K+ L Sbjct: 198 VYDFETLKIRLRETAFLTKNLKIRLVDEREGQEKEKEFHYEGGIQEFVTFLNKGKEALYP 257 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G ++ I +++AM+ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y Sbjct: 258 DVIYCEGEKEKILVEVAMQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYAR 317 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + ++ G+D REG T ++S+K+ DP+F QTK+KL +SE + V+ V++ L+ Sbjct: 318 QNKLLKDSEANLSGEDIREGLTCIISVKIEDPQFEGQTKQKLGTSEAQVAVQGIVSEQLT 377 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+I +K + A R AAR+ARDLTRRK LD LPGKLADCS +DP++ Sbjct: 378 YFLEQNPAVAKVICEKSILAQRARAAARKARDLTRRKSALDGVGLPGKLADCSSKDPERC 437 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSA G AK+GR+ E QA+LPLRGK+LNV++AR D++ +++EI +ITA GTGI Sbjct: 438 EIFIVEGDSALGPAKEGRNPETQAVLPLRGKVLNVQKARLDRIYANEEIKGMITAFGTGI 497 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FD++KLRYHKIIIMTDADVDGAHI TL+LTF + MP LI G +Y+ +PPL+ I Sbjct: 498 HED-FDLSKLRYHKIIIMTDADVDGAHISTLMLTFIYNFMPELIRKGHVYLAQPPLFTIQ 556 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + K Y +E + L G ++ +L+ Sbjct: 557 KNKKHYYAYSDEEYQRILKEIGSDGADVSRFKGLGEMNTEELQE 600 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 4/105 (3%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I K I G G + R+KGLGEMN +L ETTL+P++R+ Sbjct: 550 PPLFTIQKNKKHYYAYSDEEYQRILKEIGSDGADVSRFKGLGEMNTEELQETTLDPESRT 609 Query: 762 LLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV ++D +A D F+ LMGD+VEPRREFI++N+ LDI Sbjct: 610 LLRVNMSDEDKAELDITFTTLMGDQVEPRREFIEQNARYVTNLDI 654 >gi|295135619|ref|YP_003586295.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87] gi|294983634|gb|ADF54099.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87] Length = 646 Score = 620 bits (1600), Expect = e-175, Method: Composition-based stats. Identities = 289/622 (46%), Positives = 408/622 (65%), Gaps = 12/622 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + Y ADSIQ L+G++ V+ RPSMYIGDT G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEEAKEKKYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDAIKVDINEDNSITVEDNGRGIPIDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ LK + R+G I+E + G P+ G +GT VTF P Sbjct: 120 HGVGVSCVNALSTHLKATVYRDGQIWEQEYEIGKPMYPVKPVGETE-LSGTIVTFKPDPS 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF +++Y+TL R+REL+FLN ++I L DKR E + G++ F+ + Sbjct: 179 IFQQTLEYSYETLAKRMRELAFLNKGIRIVLTDKREKDEKGEFLSEEFHSEEGLKEFIRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++P++ I ++G ++ I +++A+ +ND ++EN+ + NNI +GGTHLSG R Sbjct: 239 LDGTREPIIADVISMEGEKNGIPVEVALVYNDTFNENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S +K K V GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTTTLKKYADASGLLEKVKFEVTGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L +LEE+P +AK IV+KV+ A+ R+AA++AR++ +RK + I LPGKL+ Sbjct: 359 VSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTAMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DPKK E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A ++ ++EI Sbjct: 419 DCSEQDPKKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMSHRVFDNEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHKI+IM DADVDG+HI TL+LTFFFR M LI Sbjct: 479 NIYTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIETLILTFFFRYMKELIEQ 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y +E+ ++ S +I+ + + ++ + Sbjct: 539 GHIYIATPPLYLVKKGSKKRYAWNEKERDEIADEYSGGIQIQRYKGLGEMNAEQLWDTTM 598 Query: 592 D-DALKIDKLIKDFYPNHDKTF 612 D + K+ ++ D D+ F Sbjct: 599 DPERRKLRQVTIDNSGEADRIF 620 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF+ E + I +L + E+ K+ + S + Sbjct: 454 LPLRGKILNVEKAMSHRVFDNEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKI 507 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I I L L+ G K + Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMKELIEQGHIY-IATPPLYLVKKGSKKRYAWNEKER 566 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D I GI +QRYKGLGEMNA QLW+TT++P+ R L +V I ++ +AD +FS LMGD Sbjct: 567 DEIADEYSGGIQIQRYKGLGEMNAEQLWDTTMDPERRKLRQVTIDNSGEADRIFSMLMGD 626 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N+ + +D Sbjct: 627 EVPPRREFIEKNAKYANID 645 >gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855] gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA] gi|237724917|ref|ZP_04555398.1| DNA gyrase B subunit [Bacteroides sp. D4] gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA] gi|212664587|gb|EEB25159.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855] gi|229436655|gb|EEO46732.1| DNA gyrase B subunit [Bacteroides dorei 5_1_36/D4] gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA] gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA] Length = 654 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 286/605 (47%), Positives = 392/605 (64%), Gaps = 18/605 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G + TGT+ TF P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233 IF+V ++ +D LQ R+REL++LN + ISL D + ++ G++ FV Sbjct: 179 DDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+R+ + L+ I + ++N I+ A+ +N GY E++ + NNI +GGTH +G R Sbjct: 239 RFLNRNNEALIDDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNNINTIEGGTHEAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 SALTR + Y E + +K K + G+D REG +V+S+K+ +P+F QTK KL +SEV Sbjct: 299 SALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVS 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR+ +RK + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P++ ELFLVEGDSAGGSAKQGRSR QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +ITALG G +I+KLRYHK++IMTDADVDG+HI TL++T F+R MP Sbjct: 479 VNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584 +I NG LYI PPLY ++GK +Y EE+ + ++ +E G ++ Sbjct: 539 IIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMNP 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 54/70 (77%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 GI QRYKGLGEMN QLWETT+NP+TR L +V I +A+ D +FS LMGD+V PRREFI Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVTIDNAANVDYIFSMLMGDDVAPRREFI 643 Query: 793 QENSLPSALD 802 ++N+ + +D Sbjct: 644 EKNATYANID 653 >gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896] Length = 638 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 301/591 (50%), Positives = 408/591 (69%), Gaps = 7/591 (1%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + Y AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNAIDE+L G Sbjct: 1 MSETENKNVQYGADQIQVLEGLEPVRKRPGMYIGST-GAKGLHHLVYEVVDNAIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V + + V D+GRGIPT++H + G S E ++T LHAGGKF YKVSGG Sbjct: 60 FCKTIYVAIEEGNAIRVIDDGRGIPTEVHPKTGKSTVETVLTVLHAGGKFGTGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS++ ++ +KR G IY F GI + L G +TGT V F P + Sbjct: 120 LHGVGVSVVNALSTFFRVTVKRGGKIYVQEFSKGISETELQEVGVTE-ETGTMVEFQPDA 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF ++ Y+TL++RLREL+FLN + I L DKR+ + ++ Y GG++ FV +L+++ Sbjct: 179 EIFDELEYRYETLEYRLRELAFLNKGISIVLEDKRAGQEQKKEFSYLGGLKEFVVFLNKN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K PL + I + D +++A+++ D Y EN+ F NNI +GG HL G ++ALTR Sbjct: 239 KTPLHKDVIHFEKQIDEYYLEIAIQYTDAYIENIYSFANNINTIEGGMHLIGFKTALTRT 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y++KS + + S+ G+D REG T+++SIK+P+P++ QTK KL + +VRSVV+SF Sbjct: 299 INDYLKKSNKN--KEESLSGEDVREGLTAIISIKLPEPQYEGQTKTKLGNPQVRSVVDSF 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + A+LEE+P AKII++K ++A R+AA+RARDLTRRKGVLD SLPGKLADCSE Sbjct: 357 LAEYFGAYLEENPQVAKIIIEKAMNARSAREAAKRARDLTRRKGVLDSTSLPGKLADCSE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE++R D++L+S+EI +IT Sbjct: 417 RDPALSEIYIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVEKSRLDRILTSEEIKNMIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A G IG++ FD +KLRYHKI+IMTDADVDGAHIRTLLLTF FR M LI NG++YI +P Sbjct: 477 AFGCSIGEE-FDESKLRYHKIVIMTDADVDGAHIRTLLLTFMFRYMKPLIENGYVYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PL+ I RGK Y +E+ L L + G ++ L Sbjct: 536 PLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPGIQRYKGLGEMNPEQLWE 586 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + + S +V V + Sbjct: 454 ILNVEKSRLDRILTSEEIKNMITAFGCSIGEEFDESKLRYHKIVIMTDADVDGAHIRTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739 F F I + + + + ++ L + G +QRY Sbjct: 514 LTFMFRYMKPLIENGYVYIAQPPLFKIHRGKKEVYAYNEKELPAILQEFGEGHKPGIQRY 573 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT+NPDTR+LLRV + D S ADD FS LMGD+VEPRREFI N+ Sbjct: 574 KGLGEMNPEQLWETTMNPDTRTLLRVTVEDFSGADDTFSMLMGDKVEPRREFIHNNAQYV 633 Query: 800 -ALDI 803 LDI Sbjct: 634 KNLDI 638 >gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36] gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36] Length = 653 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 284/604 (47%), Positives = 388/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ N SY A++IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEQIHSNNGSYSAENIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233 IF+ +NYD L R+REL++LN+ ++ISL D R + ++ + + G++ FV Sbjct: 179 DGTIFTETVYNYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ M I I + +++A+ +N Y+ENV + NNI +GGTHL+G R Sbjct: 239 RYVDSSREHFMNDVIYINTEKQGTPVEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY KIIIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I G LYI PPLY T+GK+ +Y ++ + ++ E + G ++ Sbjct: 539 IQQGCLYIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 53/66 (80%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYIFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|72388583|gb|AAZ67935.1| DNA gyrase subunit B [Psychrobacter luti] Length = 746 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 329/731 (45%), Positives = 448/731 (61%), Gaps = 46/731 (6%) Query: 39 SGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEV 98 SGLHHM++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+V Sbjct: 7 SGLHHMVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQV 66 Query: 99 IMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP 158 IMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ +G+ D Sbjct: 67 IMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHYHQTYNDGVPDGD 126 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 + A + TGT++ F PS+D+F+ F YD L RLRELSFLNS V+I L D+R + Sbjct: 127 IQQ-MEATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKR 185 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278 E +KGG+ FVSY++ K + + D IS+++A++W D Y+E VLCFTN Sbjct: 186 HE--FEHKGGLSEFVSYINAGKDGINDVFHFVSEQDDGISVEVALQWTDTYNEKVLCFTN 243 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHLSG RSALTR + SY+++ KK+K GDD REG T+++S+K+PDP+ Sbjct: 244 NIPQRDGGTHLSGFRSALTRGLNSYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPK 303 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEV+S VES ++D + +L E+P K I K++DA+ RDAAR+AR++ Sbjct: 304 FSSQTKDKLVSSEVKSAVESAMHDKFNDYLLENPSTGKAIASKIIDAARARDAARKAREM 363 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRK LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKIL Sbjct: 364 TRRKTTLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKIL 423 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVERARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLL Sbjct: 424 NVERARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLL 483 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TFFFRQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ Sbjct: 484 TFFFRQTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISAD 543 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLAS 636 I+ L ++D + + + ++ + + + D+ + + Sbjct: 544 APAITGQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDKSAMEAWKA 603 Query: 637 KLANRLNFIAE---------------------------------KSEKSWHGSIN----- 658 L +L + E+S I+ Sbjct: 604 SLQTQLEHFGSDLNPEIELVNIHAPQPKNMDAAAADLLGMKPVIEPEQSVASDIDGEAAS 663 Query: 659 ---NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + + ++L+ S I S S + Sbjct: 664 AKAQWLPRITVYVHQLAHNYLLDASFINSGEYTKLLRLSAEWNTLLAEDTFIRREATAGT 723 Query: 716 ITGPCSLLDTI 726 P + LD + Sbjct: 724 TKMPSTRLDYL 734 >gi|183219432|ref|YP_001837428.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909578|ref|YP_001961133.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774254|gb|ABZ92555.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777854|gb|ABZ96152.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 639 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 291/590 (49%), Positives = 401/590 (67%), Gaps = 4/590 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++Y A I+IL+GL+AV+KRP MYIG T ESGLH M+YEV+DN++DE++ G+ Sbjct: 1 MSNQTDQNAYSASKIKILEGLEAVRKRPGMYIG-TQDESGLHKMVYEVVDNSVDEAMAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V + + V DNGRGIPT +H ++G S EV++T LHAGGKF +YKVSGGL Sbjct: 60 CTEIDVRILPENIIEVRDNGRGIPTGIHPDKGKSTIEVVLTILHAGGKFENDAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS++L++ + +EG ++ + G+ + + G + GT V F P Sbjct: 120 HGVGVSVVNALSTYLEVEVHQEGKLHYQKYQAGVPVEDVKIIGETTH-RGTVVRFRPDHT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ DF++DTL R RE++FLN + I + D+R E + + GGI +FV Y+ K Sbjct: 179 IFTTVDFSFDTLSARFREIAFLNKGLLIRIEDQRKEEFAKHEFKFDGGIVSFVEYITESK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + G ++N+ ++A+++ D Y EN+ CFTN I GGTHL G R+ALTR + Sbjct: 239 HPLH-KVLHFVGEKENVWAEIALQYCDTYSENIFCFTNAINNNLGGTHLEGFRTALTRTL 297 Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +++K K + + GDD +EG +V+SIK+P P+F+SQTKEKLV++EV+ ++++ Sbjct: 298 NDHLKKDQTLFKKQPNGLQGDDIKEGLCAVISIKIPQPQFNSQTKEKLVNAEVKGLMQTI 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +GL+ + EE+P K I++K + AS R+AARRARDLTRRK VL+ LPGKLADCSE Sbjct: 358 TGEGLNRYFEENPAIIKKILEKCILASKAREAARRARDLTRRKTVLEGGGLPGKLADCSE 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP+ ELFLVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LS++EI TLIT Sbjct: 418 KDPEHCELFLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSNEEIRTLIT 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +GTGIG D F++ KLRY KIIIMTDADVDG+HIRTLLLTFFFR M +I G LY+ +P Sbjct: 478 VMGTGIGDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIERGSLYVAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + GK YV + ++ L + + + G ++ L + Sbjct: 538 PLYLLKFGKEAVYVYSDREKDEILKARPNDKVVIQRYKGLGEMNPEQLWD 587 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 1/155 (0%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 + ++ ++ V + F F I + + L Sbjct: 484 GDDEFNVEKLRYRKIIIMTDADVDGSHIRTLLLTFFFRYMKPVIERGSLYVAQPPLYLLK 543 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 + + + + + + + +QRYKGLGEMN QLW+TT++P R +L+VK+ Sbjct: 544 FGKEAVYVYSDREKDEILKARPNDKVVIQRYKGLGEMNPEQLWDTTMDPKERVMLQVKLQ 603 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS-LPSALD 802 D +A+D F+ LMGDEV PRR FI+ NS + LD Sbjct: 604 DFVEAEDTFNILMGDEVSPRRRFIEANSYKVANLD 638 >gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492] gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20] gi|156858838|gb|EDO52269.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC 8492] gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20] Length = 653 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 284/604 (47%), Positives = 388/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ N SY A++IQ+L+GL+AV+KRP+MYIGD GLHH++YEV+DN+IDE+L Sbjct: 1 MTEEQIHSNNGSYSAENIQVLEGLEAVRKRPAMYIGDISS-KGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRNGKIYQQEYSCGHPLYSVKEVG-TTDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFV 233 IF+ +NYD L R+REL++LN+ ++ISL D R + ++ + + G++ FV Sbjct: 179 DDTIFTETVYNYDILATRMRELAYLNAGIKISLTDLRVKDEEGNAKKEIFYSEEGLKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y+D ++ M I I + +++A+ +N Y+ENV + NNI +GGTHL+G R Sbjct: 239 RYVDSSREHFMNDVIYINTEKQGTPVEVAIMYNTSYNENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + +PGK Sbjct: 359 GAVDQAVGEALTYYLEEHPKEAKLIVDKVILAAQARIAARKARESVQRKSPMSGGGMPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + +I ALG G +I+KLRY KIIIMTDADVDG+HI TL++T FFR P + Sbjct: 479 VNNIIQALGIRFGVDGEDSKEANIDKLRYKKIIIMTDADVDGSHIDTLIMTLFFRYFPQV 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I G LYI PPLY T+GK+ +Y ++ + ++ E + G ++ Sbjct: 539 IQQGCLYIATPPLYLCTKGKAKEYCWTDQQRQKFIDTYGGGSENAVHTQRYKGLGEMNPE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 53/66 (80%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI++N+ Sbjct: 587 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLENAAEADYIFSMLMGEDVGPRRDFIEKNA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406] gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406] Length = 652 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 289/603 (47%), Positives = 407/603 (67%), Gaps = 16/603 (2%) Query: 1 MSDNIQNSS--YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ + ++ Y ADSIQ+L+GL+AV+KRP+MYIGD G GLHH+++EV+DN+IDE+L Sbjct: 1 MSEITEQNAAGYSADSIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVWEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ ITV +N + S TV+DNGRGIPT + + G SA EV++T LHAGGKF++ SYKVSG Sbjct: 60 GHCTDITVEINENNSITVTDNGRGIPTGVIAKYGKSALEVVLTVLHAGGKFDKDSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS+ +K+ + G +++ + GI + G + + GT+V FLP Sbjct: 120 GLHGVGVSCVNALSTDMKVTVYSHGKVHQQEYKKGIPQYDVKEIGES-DLHGTKVQFLPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVS 234 IF+ ++ Y+T+ +RLRELSFLN ++I+L D R + +GG+ FV Sbjct: 179 DTIFTSSEYKYETIANRLRELSFLNKGIRITLQDHRQVDAEGKSEIEMFHSEGGLREFVD 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YLD ++ L+ +P+ ++ + I +++AM +N Y ENV + NNI +GGTH++G R Sbjct: 239 YLDSTREKLIPTPLYMESDKGPIPVEVAMLYNTSYSENVFSYVNNINTIEGGTHVAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + SY +KS +K K V GDD REG T+V+S+K+ +P+F QTK KL +S+V Sbjct: 299 ALTRTLKSYADKSGMLEKLKMEVTGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSDVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L+ +LEE+P EAKIIV+KV+ A+ R+AAR+AR++ +RK VL + LPGKL Sbjct: 359 AVDQVVGEMLNTYLEENPKEAKIIVQKVILAAQARNAARKAREMVQRKNVLSGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCSE DP+K EL+LVEGDSAGGSAKQGR R+ AILPLRGKILNVE+A+ ++ + EI Sbjct: 419 ADCSESDPEKCELYLVEGDSAGGSAKQGRDRKYHAILPLRGKILNVEKAQEHRIYENDEI 478 Query: 475 GTLIT----ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 +IT + GT G+ ++ KLRYHK+IIMTDAD+DG+HIRTL+LTFFFR M +LI Sbjct: 479 KNMITALGVSFGTEEGEKVLNLTKLRYHKVIIMTDADIDGSHIRTLILTFFFRYMRALID 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI----ELFCDSKGVISKND 586 G +YI +PPLY + RGK +Y EE E + + + G ++ Sbjct: 539 GGHVYIAQPPLYLVKRGKEEKYCWTEEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWS 601 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 8/209 (3%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL--NFIAEKSEKSWHGSINN 659 + + + I V + + + L +F E+ EK + + Sbjct: 445 QGRDRKYHAILPLRGKILNVEKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLR 504 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITG 718 ++ + + F F I + L L+ G + K Sbjct: 505 YHKVIIMTDADIDGSHIRTLILTFFFRYMRALIDGGHVY-IAQPPLYLVKRGKEEKYCWT 563 Query: 719 PCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + + + G + +QRYKGLGEMN QLW TT++P+ RSL +V + A++AD Sbjct: 564 EEQREAAVKELAKDGKEDSVGIQRYKGLGEMNPEQLWSTTMDPEKRSLKQVSVESAAEAD 623 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 LFS LMGDEV PRR+FI++N+ + +DI Sbjct: 624 HLFSMLMGDEVAPRRDFIEKNARYAKIDI 652 >gi|34541335|ref|NP_905814.1| DNA gyrase subunit B [Porphyromonas gingivalis W83] gi|188994277|ref|YP_001928529.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277] gi|34397651|gb|AAQ66713.1| DNA gyrase, B subunit [Porphyromonas gingivalis W83] gi|188593957|dbj|BAG32932.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277] Length = 654 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 295/629 (46%), Positives = 403/629 (64%), Gaps = 17/629 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N S Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L GY D Sbjct: 7 KNTSASEYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGYCD 65 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V + D S TV DNGRGIP D H++EG SA EV++T LHAGGKF++ SYKVSGGLHG Sbjct: 66 NVEVIIEEDNSITVRDNGRGIPVDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS++L+ + R G I+ F G + + V GS TGT + F P S IF Sbjct: 126 VGVSCVNALSTYLRAEVYRNGKIHMQEFSCGKPLHDVEVIGSTE-RTGTTIQFKPDSSIF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLD 237 SV ++ Y L RLRELS+LN+ + ++L DKR+ + ++ + G++ FV +LD Sbjct: 185 SVTEYQYSILAKRLRELSYLNAGITLTLTDKRTLKEDGSGYKQDVFRSEEGLKEFVRHLD 244 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K+PL+ + I I + I +++AM +N Y ENV + N+I +GGTHL+G R LT Sbjct: 245 RMKEPLVDNVIHIVTEKQGIPVEVAMTYNTSYLENVYSYVNDINTIEGGTHLAGFRRGLT 304 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y S K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV V+ Sbjct: 305 RTLKKYATDSKLLDKVKVEITGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTGAVD 364 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V++ L +LEEHP EAK+IV KV+ A+ R AAR+AR++ +RK L LPGKLADC Sbjct: 365 MAVSEALEYYLEEHPKEAKLIVDKVVLAATARQAARKAREMVQRKSPLSGGGLPGKLADC 424 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +DP++ ELFLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A K+ S+EI + Sbjct: 425 SSKDPEQCELFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMQHKVFESEEIRNI 484 Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 TALG IG + +KLRYHK++IMTDADVDG+HI TL+LTFFFR M +LI NG+ Sbjct: 485 YTALGVTIGTEEDSKALNLSKLRYHKVVIMTDADVDGSHIATLILTFFFRNMRTLIENGY 544 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 ++I PPLY +GK +Y E+ + ++ + E + + + +++ Sbjct: 545 VFIATPPLYLCKKGKEQEYCWTEQQRQAFVDRYADGNESRVHVQRYKGLGE------MNE 598 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + K IE A + Sbjct: 599 EQLWETTMDPEKRTLRKVTIENAAEADAI 627 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 92/209 (44%), Gaps = 23/209 (11%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + S + Sbjct: 458 LPLRGKILNVEKAMQHKVFESEEIRNIYTALGVTIG------TEEDSKALNLSKLRYHKV 511 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGP 719 V V + F F R IE Y+ L L G + + Sbjct: 512 VIMTDADVDGSHIATLILTFFF-----RNMRTLIENGYVFIATPPLYLCKKGKEQEYCWT 566 Query: 720 CSLLDTIFS------IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 R + +QRYKGLGEMN QLWETT++P+ R+L +V I +A++A Sbjct: 567 EQQRQAFVDRYADGNESR--VHVQRYKGLGEMNEEQLWETTMDPEKRTLRKVTIENAAEA 624 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802 D +FS LMGDEV PRREFI+EN+ + +D Sbjct: 625 DAIFSMLMGDEVGPRREFIEENATYARID 653 >gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482] gi|254880798|ref|ZP_05253508.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA] gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510] gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A] gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482] gi|254833591|gb|EET13900.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA] gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510] gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A] Length = 654 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 286/605 (47%), Positives = 392/605 (64%), Gaps = 18/605 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEKKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS+ + ++ R G IY+ + G + G + TGT+ TF P Sbjct: 120 GGLHGVGVSCVNALSTHMTTQVFRGGKIYQQEYSCGHPLYSVKEVG-TADITGTKQTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFV 233 IF+V ++ +D LQ R+REL++LN + ISL D + ++ G++ FV Sbjct: 179 DDTIFTVTEYKFDILQARMRELAYLNKGITISLTDRRIKEEDGSFKKEIFHSDEGVKEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+R+ + L+ I + ++N I+ A+ +N GY E++ + NNI +GGTH +G R Sbjct: 239 RFLNRNNEALINDVIYLNTEKNNTPIECAIMYNTGYRESLHSYVNNINTIEGGTHEAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 SALTR + Y E + +K K + G+D REG +V+S+K+ +P+F QTK KL +SEV Sbjct: 299 SALTRVLKKYAEDTKALEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNSEVS 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR+ +RK + LPGK Sbjct: 359 GAVNQAVGEALTYYLEEHPKEAKQIVDKVILAATARIAARKARESVQRKSPMGGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P++ ELFLVEGDSAGGSAKQGRSR QAILPLRGKILNVE+A + K S E Sbjct: 419 LADCSSRNPEECELFLVEGDSAGGSAKQGRSRAFQAILPLRGKILNVEKAMWHKAFESDE 478 Query: 474 IGTLITALGTGIG------QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +ITALG G +I+KLRYHK++IMTDADVDG+HI TL++T F+R MP Sbjct: 479 VNNIITALGVRFGVDGNDDSKKANIDKLRYHKVVIMTDADVDGSHIDTLIMTLFYRYMPE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISK 584 +I NG LYI PPLY ++GK +Y EE+ + ++ +E G ++ Sbjct: 539 IIENGHLYIANPPLYKCSKGKISEYCYTEEARQAFIQKYGDGQENGIHTQRYKGLGEMNP 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 54/70 (77%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 GI QRYKGLGEMN QLWETT+NP+TR L +V I +A+ D +FS LMGD+V PRREFI Sbjct: 584 GIHTQRYKGLGEMNPEQLWETTMNPETRILKQVTIDNAANVDYIFSMLMGDDVAPRREFI 643 Query: 793 QENSLPSALD 802 ++N+ + +D Sbjct: 644 EKNATYANID 653 >gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483] gi|156110640|gb|EDO12385.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483] Length = 652 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 289/603 (47%), Positives = 390/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R+G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 + IF+ ++Y L RLREL++LN+ ++I+L D+R + + + G+ FV Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG D KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645 Query: 797 LPSALD 802 + +D Sbjct: 646 TYANID 651 >gi|255010097|ref|ZP_05282223.1| DNA gyrase subunit B [Bacteroides fragilis 3_1_12] gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 652 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 291/603 (48%), Positives = 396/603 (65%), Gaps = 16/603 (2%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT+ F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYAVKEVG-TADHTGTKQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + T + + G+ FV Sbjct: 179 DDSIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVINEDGSFKHETFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + NI I++A+ +N G+ EN+ + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKIEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP+K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S+E Sbjct: 419 LADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESEE 478 Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 13/204 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ E + I +L + + A +K + I Sbjct: 456 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 509 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722 + V + F F + I + + L L G K++ Sbjct: 510 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KVEEYCWTDAQ 567 Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +DT I QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS Sbjct: 568 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 627 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMG++V PRREFI+EN+ + +D Sbjct: 628 MLMGEDVGPRREFIEENATYANID 651 >gi|81251098|gb|ABB69895.1| DNA gyrase subunit B [Nitrosomonas sp. CNS332] Length = 554 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 339/549 (61%), Positives = 428/549 (77%), Gaps = 7/549 (1%) Query: 2 SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 + N ++S YD++SI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G Sbjct: 9 TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117 Y D I+V ++ D S +V DNGRGIPTD+ + E+ SAAE++MT LHAGGKF+ SYKVS Sbjct: 69 YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+ PL VTG + GTEV FL Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S IF ++YD RLRELSFLN ++I L+D+R + RE T + GGI FV Y++ Sbjct: 188 SQAIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDQR--DNREETFAFSGGIRNFVEYIN 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K L S +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + SY+EK+ +KK K GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V+ LS ++ E+P EAKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DPK EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545 Query: 538 KPPLYGITR 546 +PPLY I Sbjct: 546 QPPLYKIKH 554 >gi|189499015|ref|YP_001958485.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1] gi|189494456|gb|ACE03004.1| DNA gyrase, B subunit [Chlorobium phaeobacteroides BS1] Length = 644 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 297/639 (46%), Positives = 421/639 (65%), Gaps = 8/639 (1%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N +Y+A +IQIL G++ V+KRP+MYIGD GLHH+IYE++DN+IDE+L Sbjct: 1 MSEIQKNTSPQAYEATNIQILDGIEHVRKRPAMYIGDLHS-RGLHHLIYEIVDNSIDETL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY + I ++LN DGS TV+DNGRGIP D+H ++ SA E++MT + AGGKF++ +YKVS Sbjct: 60 AGYNESIELSLNPDGSVTVTDNGRGIPVDIHPQKKKSALELVMTLIGAGGKFDKGAYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS W ++ + REGNI+ + GI + V G + TGT+ TF+P Sbjct: 120 GGLHGVGASVVNALSEWCEVEVYREGNIWFQRYHKGIPQRDVEVIGEST-KTGTKTTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 DIF + +F D + R+REL+FLN+ ++I + D E T Y+GGI+ FV++ D Sbjct: 179 DPDIFKITEFRKDIVVDRMRELAFLNNILKIVVKDIDGSE---ETFHYEGGIKEFVTFTD 235 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++ L++ P+ I G RD+ +++A+++ND Y ENV + NNI +GGTH++G R ALT Sbjct: 236 HNRISLLKEPVYISGERDSTVVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + SY +K+ K K S+ GDD +EG T+++S+K+ +P+F QTK KL +SE +S+VE Sbjct: 296 RTLNSYAQKNDLLKNLKLSLTGDDFKEGLTAIISVKVAEPQFEGQTKTKLGNSETQSIVE 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S VN+ LS + E +P K I++KV A++ RDAAR+A+DLTRRK L+ + LPGKLADC Sbjct: 356 SIVNEQLSDFAESNPGVLKTIIEKVKSAALSRDAARKAKDLTRRKSALESSGLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S DP+ EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+ Sbjct: 416 SINDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTI 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGT G++ F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G ++I Sbjct: 476 ILALGTSFGEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK +Y D++ + + ++ + + ++ + + Sbjct: 536 QPPLYLIKSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQLWSTTM 595 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + + +E + + + + Sbjct: 596 DPEHRSLLQVSVENAMEADQVFSTLMGDKVEPRRNFIEK 634 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + ++ L LI Sbjct: 484 GEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-IAQPPLYLI 542 Query: 709 CNGDKIKITGPCS----LLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 +G + K ++++I GR I++QRYKGLGEMN QLW TT++P+ RSL Sbjct: 543 KSGKEQKYAWDDDERNGIVESIRKKQKGRGNINIQRYKGLGEMNPEQLWSTTMDPEHRSL 602 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+V + +A +AD +FS LMGD+VEPRR FI++N+ LD+ Sbjct: 603 LQVSVENAMEADQVFSTLMGDKVEPRRNFIEKNARYVRRLDV 644 >gi|189345573|ref|YP_001942102.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245] gi|189339720|gb|ACD89123.1| DNA gyrase, B subunit [Chlorobium limicola DSM 245] Length = 643 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 288/593 (48%), Positives = 400/593 (67%), Gaps = 10/593 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + SSY A +IQIL G++ V+ RP+MYIGD GLHH++YE++DN+IDE+L GY Sbjct: 4 TGTQTPSSYLATNIQILDGIEHVRMRPAMYIGDIH-TRGLHHLVYEIVDNSIDETLGGYN 62 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V LN DGS TV D GRGIP D+H E+ SA E++MT + AGGKF++ +YKVSGGLH Sbjct: 63 DYIFVGLNPDGSVTVIDRGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLH 122 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS W ++ + R+G Y + G+ + G + + GT+ TF P +I Sbjct: 123 GVGASVVNALSEWCEVEVYRDGKAYFQRYERGVPQGDVKEIGPS-DLRGTKTTFKPDHEI 181 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F +F D + R+REL+FLN +++I++ + + E Y+GG+ FV + D+++ Sbjct: 182 FKTTEFRRDIIIDRMRELAFLNKTLRITV---QDSDGNEEVFHYEGGLNEFVQFTDQNRI 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L++ P+ I G RD+ ++LA+++ND Y ENV + NNI +GGTH++G R ALTR + Sbjct: 239 KLLKEPVYIYGERDSTIVELALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y +K+ K K S+ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VES VN Sbjct: 299 AYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESIVN 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ +LE +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS D Sbjct: 359 EQLAEFLESNPNVLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSIND 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P+ EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I AL Sbjct: 419 PEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT G++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G ++I +PPL Sbjct: 479 GTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVFIAQPPL 538 Query: 542 YGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 Y + GK QY D++ + + + G ++ L + Sbjct: 539 YLVKSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPEQLWS 591 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + ++ L L+ Sbjct: 483 GEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVF-IAQPPLYLV 541 Query: 709 CNGDKIKITGPCS----LLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 +G + +++++ G+ + +QRYKGLGEMN QLW TT++P RSL Sbjct: 542 KSGKDQQYAWDDDERNAVIESLRKMQKGKANVHIQRYKGLGEMNPEQLWSTTMDPAHRSL 601 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+V + +A +AD +FS LMGD+VEPRR+FI++N+ LD+ Sbjct: 602 LQVSVENAMEADKVFSTLMGDKVEPRRDFIEKNARYVRRLDV 643 >gi|296127762|ref|YP_003635014.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563] gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563] Length = 637 Score = 618 bits (1595), Expect = e-174, Method: Composition-based stats. Identities = 278/585 (47%), Positives = 393/585 (67%), Gaps = 4/585 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +Y + +IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DN+IDE++ GY IT Sbjct: 4 AEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GAQGLHHLVYEVVDNSIDEAMAGYCKNIT 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ D V D+GRGIP D+H + ISA EV+MT+LHAGGKF+ ++YKVSGGLHGVGV Sbjct: 63 VTIEKDNIIKVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGLHGVGV 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L ++++G +Y + G+ + P+ G GT V F +DIF Sbjct: 123 SVVNALSTELIAEVRKDGKLYRQVYHRGVPEEPVKEVG-TSTKNGTTVIFKADADIFETT 181 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++Y L +RLREL+FLN ++I+L DKR E +Y+GGIE F+++L+ +KK L Sbjct: 182 VYDYKILANRLRELAFLNRGIRITLTDKREAETVSNEFYYEGGIEMFITHLNENKKALHD 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI + + D +++AM++ D Y+EN+ + NNI +GGTHL G R+ALTR T + + Sbjct: 242 KPIYLHKTEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAK 301 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK+K + +G+D REG +V+S+K+P+P+F QTK KL ++EVR+V E V +GL+ Sbjct: 302 KLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLN 361 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + ++P K I++K++ A+ R+AAR+ARDL RRK L+ SLPGKLADCSE++ K Sbjct: 362 DYFSQNPKVIKAILEKIISAANAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKC 421 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGG+AK GR R QAILPLRGK+LNVE+AR DK++ ++ + +I ALG G+ Sbjct: 422 EVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV 481 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G FDI+K+RY ++IIM DAD+DG+HIRTLLLTFFFR M LI G ++I PPLY I+ Sbjct: 482 GAS-FDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKIS 540 Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K Y +E + L + G ++ + L Sbjct: 541 FDKKNFTYAYSDEQRDKILSENKDRKYDIQRYKGLGEMNADQLWE 585 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 2/135 (1%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 + + F F I I + + + D I S Sbjct: 503 IDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKISFDKKNFTYAYSDEQRDKILSEN 562 Query: 731 R-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 + + +QRYKGLGEMNA QLWETT+NP+TR + +V DA +AD LFS LMGDEV+PRR Sbjct: 563 KDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMGDEVKPRR 622 Query: 790 EFIQENSLPS-ALDI 803 +FI+ N+ LD+ Sbjct: 623 DFIEANARYVKNLDV 637 >gi|323141431|ref|ZP_08076321.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067] gi|322414087|gb|EFY04916.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067] Length = 646 Score = 618 bits (1595), Expect = e-174, Method: Composition-based stats. Identities = 295/640 (46%), Positives = 409/640 (63%), Gaps = 11/640 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +Y+A+ I +L+GL+AV+KRP+MYIG T GLHH++YEV+DN+IDE+L GY I V Sbjct: 14 KGNYNAEQIHVLEGLEAVRKRPAMYIGSTSS-RGLHHLVYEVVDNSIDEALAGYCSDIKV 72 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S TV DNGRGIP D+ K+E A EVIMT LHAGGKF YKVSGGLHGVGV+ Sbjct: 73 IIHKDNSITVIDNGRGIPVDMMKKEQKPAVEVIMTVLHAGGKFGDGGYKVSGGLHGVGVT 132 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS +++ ++R G Y + F G L G TGT V F P + IF+ + Sbjct: 133 CVNALSEHMEVEVRRGGKCYGIEFAKGKTSKKLYEKGDCE-TTGTTVHFKPDATIFTETE 191 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ R+REL+FLN + ISL D+R E + T + GGI +V ++D+ K + Sbjct: 192 YSYDTLRLRIRELAFLNKGITISLTDER-AEDKSETFHFAGGIIEYVEFMDKDKDKINPK 250 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI ++G ++ + +++AM++ D Y EN+ + NNI ++GGTHLSG R ALTR I +Y K Sbjct: 251 PIYLEGEKNAVIVEVAMQYCDTYSENIFTYVNNINTEEGGTHLSGFRKALTRTINAYARK 310 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K+++ ++ GDD REG T+VLS+K+ +P+F SQTK KL +SEV +V++ V D L+ Sbjct: 311 TNMLKENEDALSGDDVREGLTAVLSLKVQNPQFESQTKIKLGNSEVMPIVDNLVGDTLAE 370 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 ++EE+P AK +V+K + A+ R AAR+AR+LTRRK +D+ LPGKLADC R+ + +E Sbjct: 371 FMEENPQVAKKLVEKAIVAARARLAARKARELTRRKNAMDLGGLPGKLADCKSRNVEDTE 430 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR DK+LSS+EI +ITA G GIG Sbjct: 431 IYLVEGDSAGGSAKQGRNSDFQAILPLRGKILNVEKARLDKVLSSEEIRNMITAFGCGIG 490 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D F++ K RY KIIIMTDADVDGAHIRTLLLTFF+R M LI G ++I +PPLY I + Sbjct: 491 -DDFNLEKARYGKIIIMTDADVDGAHIRTLLLTFFYRYMQPLIKEGHVFIAQPPLYLIRK 549 Query: 547 GKS-LQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 + Y +E L++ L G ++ L +D + Sbjct: 550 NQKQHYYAYSDEELQEILDEVGRDANPYVQRYKGLGEMNPGQLWET-----TMDPAARTI 604 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 H + E I + + + + N Sbjct: 605 LQVHLEDAAEADRIFSILMGDKVEPRRQFIEDNAKKVRNL 644 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V + ++ N + ++ ++ V + Sbjct: 461 ILNVEKARLDKVLSSEEIRNMITAFGCGIGDDFNLEKARYGKIIIMTDADVDGAHIRTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK--ITGPCSLLDTIFSIGRK-GISMQ 737 F + I + L LI K L + + +GR +Q Sbjct: 521 LTFFYRYMQPLIKEGHVF-IAQPPLYLIRKNQKQHYYAYSDEELQEILDEVGRDANPYVQ 579 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT++P R++L+V + DA++AD +FS LMGD+VEPRR+FI++N+ Sbjct: 580 RYKGLGEMNPGQLWETTMDPAARTILQVHLEDAAEADRIFSILMGDKVEPRRQFIEDNAK 639 Query: 798 PS-ALD 802 LD Sbjct: 640 KVRNLD 645 >gi|322370371|ref|ZP_08044930.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253] gi|320550079|gb|EFW91734.1| DNA gyrase, B subunit [Haladaptatus paucihalophilus DX253] Length = 638 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 288/592 (48%), Positives = 387/592 (65%), Gaps = 9/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD + Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSDG---NEYSAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +++D+GRGIP D H+E + A EVI+T LHAGGKF+ KSY+VSGGL Sbjct: 57 CDSIDVTIHEDNSVSIADDGRGIPVDRHEEYDMPALEVILTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPS 178 HGVG+SVVNALS + +KR+G +++ +F G + +TGT F P Sbjct: 117 HGVGISVVNALSEKFDVEVKRDGGVWKQTFERGDPAGEMERVRDMRDDEETGTYQRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 ++IF DF Y TL++RLREL+FLNS V I+L D+R E T Y GGI FV YL+ Sbjct: 177 TEIFETTDFTYSTLENRLRELAFLNSGVAITLADERDEEK-GDTFHYSGGIREFVEYLNE 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L I + DNI +++AM+ D ++ F NNI ++GGTHL+G ++ALTR Sbjct: 236 TKTALHNEVIYFEDEDDNIQVEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y + ++ G+D REG T+V+S+K PDP+F QTK KL +SEVR +VES Sbjct: 296 VVNDYANDNDMLGDLDENLRGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVES 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++GLS + EEHP A+ I+ K ++A+ R AA++A +LTRRK L+ ++LPGKLADC Sbjct: 356 AVHEGLSVYFEEHPDTAQAIISKAVEAAKARKAAKKAEELTRRKSALESSALPGKLADCQ 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP KSELF+VEGDSAGGSAKQ R RE QAILPL GK+LNVE+ R D++L +++I I Sbjct: 416 SRDPTKSELFVVEGDSAGGSAKQARDREFQAILPLFGKVLNVEKHRLDRVLENEKIRNFI 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+GTG+G++ FDI+ RYHKIIIMTDADVDGAHIRTL LT +R M L+ G++Y + Sbjct: 476 TAIGTGVGEE-FDIDDARYHKIIIMTDADVDGAHIRTLYLTLLYRYMRPLLEAGYVYAAQ 534 Query: 539 PPLYGITRGKSLQYVKD-EESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + EE E + G ++ L Sbjct: 535 PPLYRVRYRGKTYDAMTEEERDEIIEEKCDGNPSQVQRFKGLGEMNPEQLWE 586 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLWETT+NP+ R L ++ I DA+ AD +FS LMGD V PR++FIQ+ Sbjct: 569 QVQRFKGLGEMNPEQLWETTMNPENRILKQITIEDAAAADKMFSVLMGDAVGPRKQFIQD 628 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 629 HATEAEWVDI 638 >gi|237716665|ref|ZP_04547146.1| subunit B [Bacteroides sp. D1] gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4] gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22] gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a] gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22] gi|229442648|gb|EEO48439.1| subunit B [Bacteroides sp. D1] gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4] gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22] gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a] gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A] gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22] Length = 652 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 290/603 (48%), Positives = 388/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + + + G+ FV Sbjct: 179 DGTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG D KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645 Query: 797 LPSALD 802 + +D Sbjct: 646 TYANID 651 >gi|194335198|ref|YP_002016992.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307675|gb|ACF42375.1| DNA gyrase, B subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 649 Score = 618 bits (1594), Expect = e-174, Method: Composition-based stats. Identities = 286/588 (48%), Positives = 401/588 (68%), Gaps = 10/588 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SY A +IQ+L G++ V+ RP+MYIGD GLHH++YE++DN+IDE+L G+ D I V Sbjct: 15 EASYGATNIQVLDGIEHVRMRPAMYIGDI-YSRGLHHLVYEIVDNSIDETLGGFNDYIFV 73 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +LN DGS TV D+GRGIP D+H E+ SA E++MT + AGGKF++ +YKVSGGLHGVG S Sbjct: 74 SLNPDGSVTVIDHGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVGAS 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W ++ + R+G +Y F G+ + V G + + GT+ TFLP IF + Sbjct: 134 VVNALSEWCEVEVSRDGKLYFQRFERGVPQGDVKVIG-SSDHRGTKTTFLPDHLIFKTTE 192 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 D + R+REL+FLN + I++ + E + Y+GGI+ FV + D+++ L++ Sbjct: 193 LRKDIIIDRMRELAFLNKELSITV---QDTEGFQEIFHYEGGIKEFVQFTDQNRLNLLKE 249 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G RD+ +++A+++ND Y ENV + NNI +GGTH++G R ALTR + +Y +K Sbjct: 250 PIYLYGERDSTIVEIALQYNDTYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYAQK 309 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K K S+ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VE+ +N+ LS Sbjct: 310 NDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVINEQLSE 369 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + E +P K+I++KV A+M R+AARRA++LTRRK VL+ + LPGKLADCS DP+ E Sbjct: 370 FAESNPNVLKMIIEKVKGAAMSREAARRAKELTRRKSVLESSGLPGKLADCSINDPEHCE 429 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I ALGT G Sbjct: 430 LYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTSFG 489 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M +LI G ++I +PPLY + Sbjct: 490 EEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRALIEAGRVFIAQPPLYLVKS 549 Query: 547 GKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 GK QY D+E + + + G ++ L + Sbjct: 550 GKDQQYAWDDEERNSISDGMKKMQKGKANIHIQRYKGLGEMNPEQLWS 597 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + R+ L L+ Sbjct: 489 GEEEFSVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRALIEAGRVF-IAQPPLYLV 547 Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +G + + G+ I +QRYKGLGEMN QLW TT++P RS Sbjct: 548 KSGKDQQYAWDDEERNSISDGMKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 606 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL V + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 607 LLLVNVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 649 >gi|225011911|ref|ZP_03702349.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A] gi|225004414|gb|EEG42386.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-2A] Length = 646 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 275/601 (45%), Positives = 393/601 (65%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ QN Y DSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSEENQNKQYSEDSIQALEGMEHVRMRPSMYIGDI-GIRGLHHLVYEVVDNSIDEALGGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V +N D S T DNGRGIP +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDEISVVINEDNSITTKDNGRGIPVGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + R+G ++E ++ G P+ G + +TGT VTF P + Sbjct: 120 HGVGVSCVNALSERLTATVYRDGKVWEQTYERGKALAPVKSIGDSK-ETGTLVTFRPDAQ 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF+ +NYDTL R+REL++LN ++IS+ D+R E + T + G+ F+ + Sbjct: 179 IFTQTREYNYDTLSLRMRELAYLNKGIKISITDRRETDDKGEFKSETFLSEKGLIEFIHF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ ++ I ++G ++ + +++AM +N Y EN+ + NNI +GGTHL+G R Sbjct: 239 LDESREAIIGDVISMEGEKNGVPVEVAMIYNTSYSENLHSYVNNINTHEGGTHLAGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTSTLKKYADSSGLLDKLKFEIAGDDFREGLTAIISVKVGEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L +LEE+P +AKIIV+KV+ A+ R AA++AR++ +RK V+ LPGKL+ Sbjct: 359 VSQAVSEMLENYLEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSGGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSEQDPALCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIR 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + KLRYHK++IM DADVDG+HI TL+LTFFFR M LI + Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELIES 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI PPLY + +G+ Y ++ + + ++ + + ++ + Sbjct: 539 GYIYIATPPLYLVKKGQKKDYAWSDDQRDLLMQEFGSGSSVQRYKGLGEMNAEQLWDTTM 598 Query: 592 D 592 + Sbjct: 599 N 599 Score = 170 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 7/200 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + + A EK + + Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIRNIYTALGVTIGTEEDSKALNLEKLRYHK------V 507 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I S I L L+ G K Sbjct: 508 VIMCDADVDGSHISTLILTFFFRYMRELIESGYIY-IATPPLYLVKKGQKKDYAWSDDQR 566 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D + G S+QRYKGLGEMNA QLW+TT+NP R+L +V I + +AD +FS LMGD Sbjct: 567 DLLMQEFGSGSSVQRYKGLGEMNAEQLWDTTMNPQERTLRKVTIDNGGEADRVFSMLMGD 626 Query: 784 EVEPRREFIQENSLPSALDI 803 EV PRREFI++N++ + +D+ Sbjct: 627 EVPPRREFIEKNAIYANIDV 646 >gi|81251102|gb|ABB69898.1| DNA gyrase subunit B [Nitrosomonas sp. IWT310] Length = 554 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 339/549 (61%), Positives = 428/549 (77%), Gaps = 7/549 (1%) Query: 2 SDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 + N ++S YD++SI+ILKGLDAV+KRP MYIGDT +GLHHM++EV+DNAIDE+L G Sbjct: 9 TKNTESSQRDYDSNSIKILKGLDAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAG 68 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHK--EEGISAAEVIMTRLHAGGKFNQKSYKVS 117 Y D I+V ++ D S +V DNGRGIPTD+ + E+ SAAE++MT LHAGGKF+ SYKVS Sbjct: 69 YCDEISVIIHADNSISVQDNGRGIPTDIKQDDEQKRSAAEIVMTELHAGGKFDDNSYKVS 128 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL+L I R+GN++++ F +G+ PL VTG + GTEV FL Sbjct: 129 GGLHGVGVSVVNALSEWLRLTIYRKGNVHQIEFRDGVAVAPLAVTGQT-DKHGTEVHFLA 187 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S IF ++YD RLRELSFLN ++I L+D+R + RE T + GGI FV Y++ Sbjct: 188 SQVIFGNVTYHYDIFARRLRELSFLNYGIRIRLVDRR--DNREETFAFSGGIRNFVEYIN 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K L S +G +D+I++++AM+WND Y E VLCFTNNIPQKDGGTHL+GLR+A+T Sbjct: 246 RTKTVLHPSIFYAKGMKDDITVEIAMQWNDSYAEQVLCFTNNIPQKDGGTHLTGLRAAMT 305 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + SY+EK+ +KK K GDD REG T VLSIK+ +P+FSSQTKEKLVSSEVR VVE Sbjct: 306 RTLNSYIEKNELAKKAKVDTTGDDMREGMTCVLSIKLFEPKFSSQTKEKLVSSEVRPVVE 365 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V+ LS ++ E+P EAKII K+++A+ R+AAR+AR+LTRRKGVLD LPGKLADC Sbjct: 366 EVVSHKLSEFMLENPNEAKIICNKIIEAARAREAARKARELTRRKGVLDSMGLPGKLADC 425 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 E+DPK EL+LVEGDSAGGSAKQGR R+ QAI+PL+GKILNVE++RFDK++SSQEI +L Sbjct: 426 QEKDPKLCELYLVEGDSAGGSAKQGRDRKFQAIMPLKGKILNVEKSRFDKLISSQEIVSL 485 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGIG+D ++ +KLRYH+IIIMTDADVDG+HIRTLLLTFF+RQMP LI G +YI Sbjct: 486 ITALGTGIGKDEYNPDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIA 545 Query: 538 KPPLYGITR 546 +PPLY I Sbjct: 546 QPPLYKIKH 554 >gi|254456050|ref|ZP_05069479.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083052|gb|EDZ60478.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 686 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 313/638 (49%), Positives = 417/638 (65%), Gaps = 30/638 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++Y ADSI++LKGL+AV+KRP MYIGDTD +GLHHM+YEV+DN+IDE+L G+ I Sbjct: 2 TNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N DG+ TV+D+GRGIP D+HK E SAAEVIMT+LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 NVRINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I R+G + + F NG PL + G + ++GT++TFLPS +IFS Sbjct: 122 VSVVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKSK-NSGTQITFLPSKEIFSS 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--------L 236 F+ + L R+REL+FLN ++I D + + + GG+ FV++ Sbjct: 181 IKFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQ 240 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +++ L + PI I+G +DNI ++ +++WN Y E++ +TNNI QKDGGTHL G RSAL Sbjct: 241 NKNGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFPYTNNIFQKDGGTHLLGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y + KK+K ++ GDD +EG T VLS K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E+ VN+ LS W +++P AKII+ KV+ A+M RD AR+AR+ RRKG L+++ LPGKLAD Sbjct: 361 ETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460 C + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDAS 480 Query: 461 ---ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 KM+SS EI TLI ALG D+ LRY KIIIMTDADVDG+HIR LL Sbjct: 481 EQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALL 540 Query: 518 LTFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LTFF + LI NG +Y+ +PPL+ I +G Y+KDE LE+Y++ S + Sbjct: 541 LTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKG 600 Query: 577 DSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614 SK I + +L + + L + T ++ Sbjct: 601 -SKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLD 637 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 5/111 (4%) Query: 697 IEENYLTILSLICNGDKIKI--TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754 I++ ++ N ++K G + + + +++QR+KGLGEMN +LW TT Sbjct: 577 IKDELELENYIVKNSKELKKIKKGSKEYIKELELE-KSKMNIQRFKGLGEMNPEELWSTT 635 Query: 755 LNPDTRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+P+ R+LL+V+ D + L LMG++V R++FI N++ LDI Sbjct: 636 LDPENRNLLQVQYSKDLKKDQSLIHTLMGNDVALRKDFIISNAINVQNLDI 686 >gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] Length = 639 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 290/587 (49%), Positives = 396/587 (67%), Gaps = 3/587 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ YDAD IQ+L+GL+AV+KRP MY+G T G GLHH++YEV+DN+IDE+L GY D Sbjct: 4 NEFNHTKYDADQIQVLEGLEAVRKRPGMYVGGT-GARGLHHLVYEVVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + TV D+GRGIP H A E++MT LHAGGKF+ + YKVSGGLHG Sbjct: 63 NIEVIIEPGNVVTVIDDGRGIPISSHPNLNKPAVEIVMTVLHAGGKFDNEGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WL++ + R+ IY + G+ L V G + +GT + F P +IF Sbjct: 123 VGVSVVNALSEWLEVEVMRDNKIYHQRYEEGVPVKDLTVIGES-QASGTMIKFKPDLEIF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 DF Y L RL+EL++LN ++I + DKR E + Y GGI +FV L+ +K P Sbjct: 182 ESIDFEYKKLIKRLKELAYLNKGIKIEIKDKRRDEIKTDIFQYDGGIVSFVQELNENKDP 241 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + PI + ++ I++A+++N+ Y +N+ F NNI +GG HLSG +SALTR I Sbjct: 242 IHEEPIYFETEEEDNHIEVAIQYNETYVDNIFTFANNINTHEGGNHLSGFKSALTRTIND 301 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K+D ++ GDD REG +++++K+PDP+F QTK KL +SEVR +V+S V++ Sbjct: 302 YARRHDYLKEDDSNLSGDDIREGIVAIVNVKLPDPQFEGQTKTKLANSEVRGIVDSVVSE 361 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +LEE P IIV+K + A+ R AA++AR+LTRRK L +LPGKLADCS RDP Sbjct: 362 NLDRFLEEDPEIGSIIVQKAIKAAEARKAAKKARELTRRKSALTSTALPGKLADCSSRDP 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++SEL++VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR +K+L++ EI +LITALG Sbjct: 422 EESELYIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLNKILNNNEIRSLITALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG++ FD+ + RY KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 482 TGIGKE-FDMEQARYKKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEAGNIYIAQPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +G+ YV ++ LE+ L S G ++ L Sbjct: 541 KVNKGRKEYYVYNDRKLEELLNEIGRSGISIQRYKGLGEMNPKQLWE 587 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + K + ++ V + Sbjct: 456 ILNVEKARLNKILNNNEIRSLITALGTGIGKEFDMEQARYKKIIIMTDADVDGAHIRTLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + + I + + + + L + + IGR GIS+QRYK Sbjct: 516 LTFFYRYMRPLLEAGNIYIAQPPLYKVNKGRKEYYVYNDRKLEELLNEIGRSGISIQRYK 575 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++P+ R+ L+V+I DA ADD+F+ LMGD+V PRR+FIQ+++ Sbjct: 576 GLGEMNPKQLWETTMDPENRTTLQVQIEDAVMADDIFTTLMGDKVAPRRKFIQKHAKEVK 635 Query: 800 ALDI 803 +DI Sbjct: 636 EIDI 639 >gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM 17244] gi|169258323|gb|EDS72289.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis DSM 17244] Length = 636 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 293/589 (49%), Positives = 399/589 (67%), Gaps = 5/589 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ QNS+YDA I++L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--QNSNYDASKIKVLEGLEAVRKRPGMYIGST-GEKGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ + TV D+GRGIPT ++++ SA E+ +T LHAGGKF+ +YKVSGGL Sbjct: 58 CKNIVVTIGEGDTITVEDDGRGIPTGMNEKYKKSAVEIALTMLHAGGKFDSGTYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L + + + G +YE + G L V G TGT V F P + Sbjct: 118 HGVGVSVVNALSEHLTVNVYQNGQVYEQKYERGKPITGLEVVGKTK-RTGTTVFFKPDGE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS FNYDTL+HR+REL+FLN + I+L D R + +E + Y+GGI FV Y +R K Sbjct: 177 IFSELVFNYDTLKHRIRELAFLNKGLNITLKDTREGKDQEESFHYEGGIIEFVDYANRGK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I + D +++AM+++ Y E++ F NNI +GG H++G ++ALTR I Sbjct: 237 EKLTPEVIYFEKESDVCMLEVAMQFSTSYSESIYSFANNINTVEGGMHVNGFKTALTRSI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y K K ++ ++ GDD REG V+S+K+ DP F QTK KL + EVR V++ V Sbjct: 297 NAYARKYNILKDNEENLSGDDIREGLCVVISVKLADPEFEGQTKTKLGNPEVRGYVDTTV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D +S++LEEHP AKIIV+K L A R AAR+A+DL RRK VL+ +LPGKLADC E+ Sbjct: 357 GDNISSYLEEHPPVAKIIVEKALTAQRARKAARKAKDLVRRKSVLESTALPGKLADCREK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K E+++VEGDSAGGSAK GR+ + QAILPLRGKILNVE+AR D++L++ I ++ITA Sbjct: 417 DPSKCEIYIVEGDSAGGSAKLGRNSKTQAILPLRGKILNVEKARLDRILNTDTIRSMITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGI + F+I K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PP Sbjct: 477 FGTGI-SEEFNIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + + K + Y+ +E LE+ L + G ++ L + Sbjct: 536 LYKLEKQKKVWYLYSDEQLEEKLQEIGRDKIGLQRYKGLGEMNGEQLWD 584 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 12/201 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N ++ + + + + ++ N + K + Sbjct: 447 LPLRGKILNVEKARLDRILNTDTIRSMITAFGTGISEEFNIEKARYHK-----------I 495 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F + I + + + L + L Sbjct: 496 VIMTDADVDGAHIRTLLLTFFYRYMRGLIDAGYVYIAQPPLYKLEKQKKVWYLYSDEQLE 555 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + + IGR I +QRYKGLGEMN QLW+TT+NP+ R+LL+V I DA+ AD++FS LMGD Sbjct: 556 EKLQEIGRDKIGLQRYKGLGEMNGEQLWDTTMNPENRTLLQVSIDDAAYADEIFSILMGD 615 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +V+PR++FI EN+ LDI Sbjct: 616 QVQPRKDFITENARKVQNLDI 636 >gi|260172424|ref|ZP_05758836.1| DNA gyrase subunit B [Bacteroides sp. D2] gi|315920720|ref|ZP_07916960.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2] gi|313694595|gb|EFS31430.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2] Length = 652 Score = 618 bits (1593), Expect = e-174, Method: Composition-based stats. Identities = 287/603 (47%), Positives = 389/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R+G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRDGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 + IF+ ++Y L RLREL++LN+ ++I+L D+R + + + G+ FV Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKGEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++D K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAVHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645 Query: 797 LPSALD 802 + +D Sbjct: 646 TYANID 651 >gi|217076995|ref|YP_002334711.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B] gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B] Length = 627 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 284/582 (48%), Positives = 375/582 (64%), Gaps = 9/582 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A +I++LKGL+ V++RP MYIG T G++GLHH++YE++DN+IDESL+GY D I VT+ Sbjct: 2 DYSAQNIKVLKGLEPVRQRPGMYIGST-GKAGLHHLVYEIVDNSIDESLQGYCDTIKVTI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG SVV Sbjct: 61 FKDGSVEVEDNGRGIPVDIHPETGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS WL++ + R+G +Y + G + + G GT V F P IFS DF+ Sbjct: 121 NALSQWLEVEVHRDGKVYYQRYERGTPTCEVKIIGETE-KRGTTVRFKPDPLIFSTTDFD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 DT+ RLREL+FLN ++ I D+R+ R T Y GGI+ FVS+L + K L P+ Sbjct: 180 TDTILMRLRELAFLNPNITIYFKDERNNTER--TFHYTGGIKEFVSHLSKGSKSLH-EPV 236 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G + I ++++ ++ D E + F NNI DGGTH++G +SA TR + K+ Sbjct: 237 YISGEYEKIKVEVSFQYTDSDFEKIYSFVNNIRTVDGGTHVTGFKSAFTRVVNELGRKTG 296 Query: 309 GSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K S+ GDD REG +V+S+ P F QTK KL + EV+ V V + L + Sbjct: 297 QL--KKDSLRGDDVREGMVAVISVLMSSTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEF 354 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 E + KII++K L+A R+AA+ AR++ +RK V +SLPGKLADC + ++SEL Sbjct: 355 FETNENTLKIIIQKALEAKKAREAAKHAREMVKRKSVFGSSSLPGKLADCITKKLEESEL 414 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQ R R QAILPLRGKILNVE++ + K+L ++++ +ITALG GIG Sbjct: 415 FIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQVRDIITALGVGIG- 473 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI KLRY KIIIMTDADVDGAHIRTLLLT F+R M LI G +YI +PPLY +T G Sbjct: 474 DDFDIKKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIEEGRIYIAQPPLYKLTVG 533 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K Y +E LED+ + G ++ L Sbjct: 534 KDHYYFYSDEELEDFKKTLEDKKYEIQRYKGLGEMNPEQLWE 575 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + ++ V + Sbjct: 444 ILNVEKSSWLKLLKNEQVRDIITALGVGIGDDFDIKKLRYGKIIIMTDADVDGAHIRTLL 503 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + + I RI + L D L D ++ K +QRYK Sbjct: 504 LTLFYRYMKELIEEGRIYIAQPPLYKLTVGKDHYYFYSDEELEDFKKTLEDKKYEIQRYK 563 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++P+TR LL+V I DA AD+LF LMG + E R+EFI ++L Sbjct: 564 GLGEMNPEQLWETTMDPNTRKLLKVSIEDAETADELFEMLMGSDTESRKEFIFRHALSVK 623 Query: 800 ALDI 803 +D+ Sbjct: 624 EIDV 627 >gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185] gi|149128150|gb|EDM19370.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185] Length = 652 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 290/603 (48%), Positives = 390/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++I+L D+R + + + G+ FV Sbjct: 179 DDTIFTETVYDYKILASRLRELAYLNAGLRITLTDRRVVNEDGSFKSEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + LS +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 14/275 (5%) Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + + + + + + K S + + + ++ + Sbjct: 386 KVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAGGTAK 445 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +E+A+ + + I +L + + EK Sbjct: 446 QGRN-RMFQAILPLRGKILNVEKAMYHKALESDEIRNIYTALGVTIGTEDDSKEANIEKL 504 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + I + V + F F + I + + L L G Sbjct: 505 RYHKI------IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG- 556 Query: 713 KIKITGPCSL-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 K++ +DT I QRYKGLGEMNA QLWETT++P+ R L +V I Sbjct: 557 KVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNI 616 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +A++AD +FS LMG++V PRREFI+EN+ + +D Sbjct: 617 DNAAEADYIFSMLMGEDVGPRREFIEENATYANID 651 >gi|91762418|ref|ZP_01264383.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1002] gi|91718220|gb|EAS84870.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1002] Length = 685 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 313/609 (51%), Positives = 412/609 (67%), Gaps = 28/609 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 NS+Y ADSI++LKGL+AV+KRP MYIGDTD +GLHHM+YEV+DN+IDE+L G+ I Sbjct: 2 KNNSTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N DG+ TV D+GRGIP D+HK E +SAAEVIMT+LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 DVKINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I R+GN Y + F +G PL V G + +TGT++TFLPS +IFS Sbjct: 122 VSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSK-ETGTQITFLPSKEIFSS 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--- 241 F + R+REL+FLN ++I++ D + + I + GG+ FV +LD ++ Sbjct: 181 IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLV 240 Query: 242 -----PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 L + PI I+G +DNI I+ +++WN Y E++ +TNNI QKDGGTHL G RSAL Sbjct: 241 NKTGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y + KK+K ++ GDD +EG T V+S K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V++ LS W +++P +KII+ KV+ A++ RD AR+AR+ RRKG L+++ LPGKLAD Sbjct: 361 ESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460 C + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGS 480 Query: 461 --ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 KM+SS E+ TLI ALG + D+ LRY KIIIMTDADVDG+HIR LLL Sbjct: 481 EHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLL 540 Query: 519 TFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 TFF + LI NG +Y+ +PPL+ I +G Y+KDE+ LEDY++ + + Sbjct: 541 TFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGT 600 Query: 578 SKGVISKND 586 + + D Sbjct: 601 KEFTKAYED 609 Score = 131 bits (329), Expect = 6e-28, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 23/167 (13%) Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITG 718 ++ V + F + ++ N L I G K I I Sbjct: 519 YGKIIIMTDADVDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKD 578 Query: 719 PCSLLDTIFSIGR------KG--------------ISMQRYKGLGEMNASQLWETTLNPD 758 L D I + KG +S+QR+KGLGEMN +LW TTL+P+ Sbjct: 579 EKELEDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPE 638 Query: 759 TRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 TR+LL+V+ D + DL LMG++V R++FI N++ LDI Sbjct: 639 TRNLLQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685 >gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134] gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134] Length = 659 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 286/598 (47%), Positives = 401/598 (67%), Gaps = 14/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +NS Y AD+I+ L+GL+AV+ RPSMYIGD G GLHH+I+EV+DN+IDE+L GY D Sbjct: 13 DAKNSEYSADNIRALEGLEAVRMRPSMYIGDV-GVRGLHHLIWEVVDNSIDEALAGYCDH 71 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ITV +N D S TV+DNGRGIPT + + SA EV+MT LHAGGKF++ +Y+VSGGLHGV Sbjct: 72 ITVEVNTDNSITVTDNGRGIPTGFNSQMQKSALEVVMTVLHAGGKFDKDTYQVSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVS VNALS+ L+ + REG I++ + G + V G + + TGT + F+P + IF+ Sbjct: 132 GVSCVNALSTLLRATVHREGKIFQQEYKQGDPQTEVEVIGES-DKTGTVIHFVPDATIFT 190 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239 ++ Y+T+ RLRELS+LN ++++++D R + +GG+ FV YLD Sbjct: 191 AIEYKYETISQRLRELSYLNKGIRLTMVDHRVKGEDGKALTEDFLSEGGLTEFVRYLDET 250 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ + PI ++G + + + +A +N Y ENV + NNI +GGTH+SG R ALTR Sbjct: 251 RQSFLPEPIYVEGEKSGVPVQVAFTYNHSYSENVYSYVNNINTIEGGTHISGFRRALTRT 310 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY +K +K K V GDD REG T+V+S+K+ +P+F QTK KL +SEV VV++ Sbjct: 311 LKSYADKEGMLEKAKVDVTGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVMGVVDNA 370 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ LS +LEE+P +AK I++KV+ A+ R AAR+AR++ +RK VL + LPGKLADCSE Sbjct: 371 TSEALSKFLEENPKQAKSIIQKVILAAQARHAARKAREMVQRKNVLSGSGLPGKLADCSE 430 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP EL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE+A+ K+ ++EI +IT Sbjct: 431 KDPGLCELYLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKAQEYKIYDNEEIKNIIT 490 Query: 480 ALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ALG G+D ++ KLRYHKIIIMTDADVDG+HIRTL+LTFFFR M LI +G++Y Sbjct: 491 ALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSHIRTLILTFFFRYMRDLIESGYVY 550 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVISKNDLRN 589 I PP Y + +GK Y +++ + + + + + G ++ L Sbjct: 551 IALPPFYLVKKGKKELYAWNDDDRDVAIKELAGNGKPESVHVQRYKGLGEMNPEQLWE 608 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 25/200 (12%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + + + +K+ + ++ V Sbjct: 468 ILNVEKAQEYKIYDNEEIKNIITALGVTFGKDDDDKALNMEKLRYHKIIIMTDADVDGSH 527 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT--------IF 727 + F F I S + L L+ G K L I Sbjct: 528 IRTLILTFFFRYMRDLIESGYVY-IALPPFYLVKKGKK-------ELYAWNDDDRDVAIK 579 Query: 728 SIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + G + +QRYKGLGEMN QLWETT+NP+ RSL +V I A+ AD LFS LMGD Sbjct: 580 ELAGNGKPESVHVQRYKGLGEMNPEQLWETTMNPENRSLKQVTIESAAGADHLFSMLMGD 639 Query: 784 EVEPRREFIQENSLPSALDI 803 +V PRREFI+EN+ + +DI Sbjct: 640 DVPPRREFIEENAKYANVDI 659 >gi|71083152|ref|YP_265871.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1062] gi|71062265|gb|AAZ21268.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) [Candidatus Pelagibacter ubique HTCC1062] Length = 685 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 311/609 (51%), Positives = 411/609 (67%), Gaps = 28/609 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++Y ADSI++LKGL+AV+KRP MYIGDTD +GLHHM+YEV+DN+IDE+L G+ I Sbjct: 2 NNKNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N DG+ TV D+GRGIP D+HK E +SAAEVIMT+LHAGGKF+ SYKVSGGLHGVG Sbjct: 62 DVKINSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS LKL I R+GN Y + F +G PL V G + +TGT++TFLPS +IFS Sbjct: 122 VSVVNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKSK-ETGTQITFLPSKEIFSS 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--- 241 F + R+REL+FLN ++I++ D + + I + GG+ FV +LD ++ Sbjct: 181 IKFTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLV 240 Query: 242 -----PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 L + PI I+G +DNI I+ +++WN Y E++ +TNNI QKDGGTHL G RSAL Sbjct: 241 NKTGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYPYTNNIYQKDGGTHLLGFRSAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y + KK+K ++ GDD +EG T V+S K+PDP+FSSQTK+KLVSSEVR +V Sbjct: 301 TRVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V++ LS W +++P +KII+ KV+ A++ RD AR+AR+ RRKG L+++ LPGKLAD Sbjct: 361 ESIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV---------------- 460 C + +ELF+VEGDSAGGSAKQGR+R NQA+LPLRGKILN Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGS 480 Query: 461 --ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 KM+SS E+ TLI ALG + D+ LRY KIIIMTDADVDG+HIR LLL Sbjct: 481 EHRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLL 540 Query: 519 TFF-FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 TFF + LI NG +Y+ +PPL+ I +G Y+KDE+ LEDY++ + + Sbjct: 541 TFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGT 600 Query: 578 SKGVISKND 586 + + D Sbjct: 601 KEFTKAYED 609 Score = 131 bits (329), Expect = 6e-28, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 23/167 (13%) Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK-IKITG 718 ++ V + F + ++ N L I G K I I Sbjct: 519 YGKIIIMTDADVDGSHIRALLLTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKD 578 Query: 719 PCSLLDTIFSIGR------KG--------------ISMQRYKGLGEMNASQLWETTLNPD 758 L D I + KG +S+QR+KGLGEMN +LW TTL+P+ Sbjct: 579 EKELEDYILKNNKELQKIKKGTKEFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPE 638 Query: 759 TRSLLRVKI-TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 TR+LL+V+ D + DL LMG++V R++FI N++ LDI Sbjct: 639 TRNLLQVQYSKDIKKDQDLIHTLMGNDVALRKDFIVSNAINVQNLDI 685 >gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641] gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641] Length = 645 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 299/647 (46%), Positives = 397/647 (61%), Gaps = 17/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+DN + S YD IQ+L+GL+ V+KRP MYIG T E GLHH++YEV+DN++DE+L GY Sbjct: 1 MADN-KPSHYDGKDIQVLEGLEPVRKRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V + DGS V DNGRGIP D H +E I EV++T LHAGGKF + YKVSGGL Sbjct: 59 CTDIQVWICDDGSIKVQDNGRGIPVDKHPKEHIPTVEVVLTILHAGGKFGGEGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ +K+++ R+G YE++F G L V G + + TGT V F P + Sbjct: 119 HGVGVSVVNALSTQMKVQVCRDGKRYEITFSRGKTVEKLHVVGDSKH-TGTTVRFWPDPE 177 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF+ FNY+TL R RE++FLN ++I+L D+R + + T ++ GI+ FV + Sbjct: 178 IFTETTVFNYNTLAERFREMAFLNKGLKITLYDERELDGEGVAKHETFQFQDGIKDFVKF 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294 L K+ L PI + +++AM+W + N V F NNI +GGTHL G + Sbjct: 238 LTTGKEVLNTKPIYFEAEGPAGEVEVAMQWTSSFSTNSVFSFANNINTIEGGTHLDGFKQ 297 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 A+TR I Y + K+ ++ GDDCREG ++V+S+K+ DP+F QTK KL +SE+R Sbjct: 298 AVTRTINDYAREKGILKEKDSNLTGDDCREGLSAVISVKLHDPQFEGQTKTKLGNSEMRQ 357 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +V S VN GL +LEE+P AK I+ K A R+AAR+AR++TRRK VLD +LPGKL Sbjct: 358 LVSSAVNQGLGEYLEENPTPAKRIINKASQALKAREAARKAREMTRRKNVLDSFALPGKL 417 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS ++ E+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA + LSS I Sbjct: 418 ADCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 477 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +LITA+GT IG D FD K RYH+IIIMTDADVDGAHI+ LLLTFF+R MP LI+ G++ Sbjct: 478 SSLITAVGTNIG-DDFDAEKARYHRIIIMTDADVDGAHIQILLLTFFYRYMPELINRGYI 536 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLYGI GK Y N + D K + + +D Sbjct: 537 YIAMPPLYGIKEGKKKI-------RYVYNDNALAEAMKDYPTDKKPSVQRYKGLGEMDPD 589 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 + ++ + IE A + E + + Sbjct: 590 QLWETTMEPETRILMQVGIEDAAAAERAVSELMGDQVEPRKEYIQKH 636 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 22/242 (9%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + D + I + D + K +E+A + + ++ Sbjct: 419 DCSSKNAADCEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTIS 478 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + ++ + + + + + + ++ V + + +F + Sbjct: 479 SLITAVGTNIGDDFDAEKARYHR-----------IIIMTDADVDGAHI--QILLLTFFYR 525 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRYKGL 742 Y NR K KI + D + K S+QRYKGL Sbjct: 526 YMPELINRGYIYIAMPPLYGIKEGKKKIRYVYN--DNALAEAMKDYPTDKKPSVQRYKGL 583 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-L 801 GEM+ QLWETT+ P+TR L++V I DA+ A+ S LMGD+VEPR+E+IQ+++ L Sbjct: 584 GEMDPDQLWETTMEPETRILMQVGIEDAAAAERAVSELMGDQVEPRKEYIQKHAKDVRFL 643 Query: 802 DI 803 DI Sbjct: 644 DI 645 >gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8] gi|6831559|sp|P77993|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II subunit B gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8] Length = 636 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 277/589 (47%), Positives = 375/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G P+ V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GGI +V YL+R KK L Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237 Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D + +++A ++ D Y E+++ F N I DGGTH++ +S LTR + Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K S G+D REG T+V+S+ + +P F QTK KL + EV+ V + Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + +P K I+ K++ R+AA+RAR++ RRK VL +LPGKLADCS Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++ D++L +++I +I A Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M LI G +YI PP Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I G+ YV ++ L +Y G ++ L Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++++ + + + S ++ + + Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + I R+ + + ++ + L + + K I +QRYK Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG++ RREFI+ ++L Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632 Query: 800 ALDI 803 LDI Sbjct: 633 ELDI 636 >gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8] Length = 636 Score = 617 bits (1592), Expect = e-174, Method: Composition-based stats. Identities = 277/589 (47%), Positives = 375/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G P+ V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPMEVIGET-DKHGTIVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GGI +V YL+R KK L Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237 Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D + +++A ++ D Y E+++ F N I DGGTH++ +S LTR + Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K S G+D REG T+V+S+ + +P F QTK KL + EV+ V + Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + +P K I+ K++ R+AA+RAR++ RRK VL +LPGKLADCS Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++ D++L +++I +I A Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M LI G +YI PP Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I G+ YV ++ L +Y G ++ L Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++++ + + + S ++ + + Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + I R+ + + ++ + L + + K I +QRYK Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG++ RREFI+ ++L Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632 Query: 800 ALDI 803 LDI Sbjct: 633 ELDI 636 >gi|120437084|ref|YP_862770.1| DNA gyrase subunit B [Gramella forsetii KT0803] gi|117579234|emb|CAL67703.1| DNA gyrase subunit B [Gramella forsetii KT0803] Length = 646 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 278/606 (45%), Positives = 405/606 (66%), Gaps = 11/606 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + +Y ADSIQ L+G++ V+ RPSMYIGDT G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEEAKKHNYSADSIQALEGMEHVRMRPSMYIGDT-GVRGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S T DNGRGIP DLHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDNIKVTINEDNSITTEDNGRGIPIDLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + R+G +++ + G P+ TG +GT VTF P Sbjct: 120 HGVGVSCVNALSEHLTAIVFRDGQVWQQEYELGKPLYPVKPTGETE-LSGTIVTFKPDPS 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISL----IDKRSPEPREITMFYKGGIEAFVSY 235 IF+ ++NYDTL R+REL++LN ++ISL + + E + G++ F+ + Sbjct: 179 IFTQTLEYNYDTLASRMRELAYLNKGIRISLTDKRNKEDNGEFVHDDFHSEEGLKEFIRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++P++ I ++G +++I +++AM +N + EN+ + NNI +GGTHLSG R Sbjct: 239 LDGNREPIIGDVISMEGEKNDIPVEVAMVYNTSFSENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTTTLKKYADSSGLLDKVKFEITGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L +LEE+P +AK IV+KV+ A+ R+AA++AR++ +RK V+ + LPGKL+ Sbjct: 359 VSQAVSEMLENYLEENPNDAKTIVQKVILAAQARNAAKKAREMVQRKTVMSVGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS++DP++ E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A ++ ++EI Sbjct: 419 DCSDQDPEQCEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMSHRVFDNEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M LI N Sbjct: 479 NIYTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHIETLILTFFFRYMKELIEN 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G+ +Y E+ ++ + S +I+ + + ++ + Sbjct: 539 GHIYIATPPLYLVKKGQKKRYAWSEKERDEIAESYSGGVQIQRYKGLGEMNAEQLWDTTM 598 Query: 592 DDALKI 597 D +I Sbjct: 599 DPEFRI 604 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF+ E + I +L + E+ K+ + S + Sbjct: 454 LPLRGKILNVEKAMSHRVFDNEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKV 507 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I + I L L+ G K + Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLVKKGQKKRYAWSEKER 566 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D I G+ +QRYKGLGEMNA QLW+TT++P+ R L +V I + +AD +FS LMGD Sbjct: 567 DEIAESYSGGVQIQRYKGLGEMNAEQLWDTTMDPEFRILRQVNIDNGGEADRIFSMLMGD 626 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N+ + +D Sbjct: 627 EVPPRREFIEKNAKYANID 645 >gi|329964535|ref|ZP_08301589.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057] gi|328524935|gb|EGF51987.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057] Length = 657 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 284/607 (46%), Positives = 391/607 (64%), Gaps = 19/607 (3%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + ++Y A +IQ+L+GL+AV+KRP+MYIGD E+GLHH++YEV+DN+IDE++ Sbjct: 1 MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-ENGLHHLVYEVVDNSIDEAM 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFL 176 GGLHGVGVS VNALS + ++ R G IY+ + G + G+ +GT+ TF Sbjct: 120 GGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEVGTCDPGFSGTKQTFW 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232 P IF+V ++ Y TLQ RLREL++LN + I+L D RS + P+ + G++ F Sbjct: 180 PDDSIFTVSEYKYTTLQARLRELAYLNKGITITLTDLRSKDEEGNPQVEKFHSEEGVKEF 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL+ + PL I + + + I+ A+ +N GY EN+ + NNI K+GGTH G Sbjct: 240 VRYLNSNNNPLFDDVIYLNTEKAGVPIECAIMYNTGYRENLHSYVNNINTKEGGTHEGGF 299 Query: 293 RSALTRQITSYVEK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 R+ALTR + Y E + +K K + G+D REG +V+S+K+ +P+F QTK KL +S Sbjct: 300 RAALTRVLKKYGEDTCAKQLEKAKVEISGEDFREGLIAVISVKVAEPQFEGQTKTKLGNS 359 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV V V + LS +LEEHP EAK+IV+KV+ A+ R AAR+AR+ +RK + + Sbjct: 360 EVSGAVNQAVGEALSYYLEEHPKEAKLIVEKVILAATARVAARKARESVQRKSPMSGGGM 419 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K Sbjct: 420 PGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFE 479 Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 S E+ +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR Sbjct: 480 SDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYF 539 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVI 582 P +I NG+LYI PPLY ++GK +Y ++ + ++ E + G + Sbjct: 540 PQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDTYGGGSENAIHTQRYKGLGEM 599 Query: 583 SKNDLRN 589 + L Sbjct: 600 NPEQLWE 606 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 51/66 (77%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + A++AD +FS LMG++V PRR+FI+ N+ Sbjct: 591 QRYKGLGEMNPEQLWETTMNPENRMLKQVHLESAAEADYVFSMLMGEDVGPRRDFIEANA 650 Query: 797 LPSALD 802 + +D Sbjct: 651 TYANID 656 >gi|326335208|ref|ZP_08201404.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692616|gb|EGD34559.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 656 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 286/637 (44%), Positives = 409/637 (64%), Gaps = 23/637 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + Y AD+IQ L+G++ V+ RPSMYIGD G GLHH++YEVLDN+IDE+L GY Sbjct: 1 MSEQLNQDKYSADNIQSLEGMEHVRVRPSMYIGDV-GMRGLHHLVYEVLDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V +N D S TV DNGRGIP D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTISVFINPDNSITVEDNGRGIPVDIHKKEGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L + R+G ++ + G+ + G N GT+VTFLP ++ Sbjct: 120 HGVGVSVVNALSTHLTATVYRDGKEWQQEYERGVALYSVKEIGET-NKRGTKVTFLPDTE 178 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSY 235 IF +F+YD L R+REL+FLN ++I+L D R + + + + G+ F+ Y Sbjct: 179 IFQQSIEFSYDILASRIRELAFLNKGIRITLTDLREKDDQGKPLSQEFYSEKGLVEFIQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ P++ I ++G ++ I +++AM +ND ++EN+ + NNI +GGTHL G R Sbjct: 239 LDGNRPPIISKIISMEGEKNEIPVEVAMVYNDSFNENLHSYVNNINTHEGGTHLQGFRMG 298 Query: 296 LTRQITSYVEKSFGSK------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 LTR + +Y +KS + K+ + GDD REG T+++S+K+ +P+F QTK KL + Sbjct: 299 LTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 EV + V V++ L ++LEE+P +AK IV KV+ A+ R AA++AR+ +RK + A Sbjct: 359 REVTAAVSQAVSEMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPMGGAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC +++P+ ELFLVEGDSAGG+AKQGR ++ QAILPLRGKILNVE+A ++L Sbjct: 419 LPGKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQHRVL 478 Query: 470 SSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 S+EI + TALG IG D +++KLRY+KIIIM DADVDG+HI TL+LTFFFR M Sbjct: 479 DSEEIRNIYTALGVTIGTDEDSKALNMSKLRYYKIIIMCDADVDGSHIATLILTFFFRYM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 LI G +YI PPLY + +GK QY +E + + ++ + + Sbjct: 539 RELIEEGHIYIATPPLYLLKQGKKEQYAWSDEERDAITNEFYSQAQAKVAVQRYKGLGE- 597 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ D + + K IE AV + Sbjct: 598 -----MNATQLADTTMDPKHRTLRKVTIENAVEADRI 629 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 11/203 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ V + E + I +L + ++ K+ + S + Sbjct: 460 LPLRGKILNVEKAMQHRVLDSEEIRNIYTALGVTIG------TDEDSKALNMSKLRYYKI 513 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F F + I I L L+ G K + Sbjct: 514 IIMCDADVDGSHIATLILTFFFRYMRELIEEGHIY-IATPPLYLLKQGKKEQYAWSDEER 572 Query: 724 DTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 D I + + +++QRYKGLGEMNA+QL +TT++P R+L +V I +A +AD +FS Sbjct: 573 DAITNEFYSQAQAKVAVQRYKGLGEMNATQLADTTMDPKHRTLRKVTIENAVEADRIFSM 632 Query: 780 LMGDEVEPRREFIQENSLPSALD 802 LMGD+V PRREFI++N+ + +D Sbjct: 633 LMGDDVPPRREFIEKNARYANID 655 >gi|225010581|ref|ZP_03701052.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C] gi|225005410|gb|EEG43361.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C] Length = 646 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 273/601 (45%), Positives = 400/601 (66%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++ +Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEELEKKNYSADSIQALEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D IT+ +N D S +V+DNGRGIP +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTITIDINEDNSISVTDNGRGIPVGMHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L+ + +G I+E + G P+ G + +GT VTF P Sbjct: 120 HGVGVSCVNALSVKLQATVYVDGKIWEQEYERGKAVYPVRSIGET-DKSGTTVTFWPDPT 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235 IF+ +++Y+TL +R+RELS+LN V++++ DKR E + G++ F+ + Sbjct: 179 IFTQTVEYSYETLSNRMRELSYLNKGVKLTITDKRQKEEDGSFVSEVFYSDEGLKEFIKF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++ L+++ I I+G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 239 LDGNREQLIKNVISIEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV + Sbjct: 299 LTTTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEE+P +AKIIV+KV+ A+ R AA +AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQAVSEMLANYLEENPDDAKIIVQKVVLAAQARHAANKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A ++ ++EI Sbjct: 419 DCSEQDPSLCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHRVFDNEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M LI Sbjct: 479 NIYTALGVSIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELIDG 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y +++ + + S I+ + + ++ + Sbjct: 539 GHVYIATPPLYLVKKGAKKRYAWNDKERDAIAEEFNGSVSIQRYKGLGEMNAEQLWDTTM 598 Query: 592 D 592 + Sbjct: 599 N 599 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF+ E + I +L + E+ K+ + + Sbjct: 454 LPLRGKILNVEKAMQHRVFDNEEIKNIYTALGVSIG------TEEDSKALNLDKLRYHKV 507 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I + L L+ G K + Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMRELIDGGHVY-IATPPLYLVKKGAKKRYAWNDKER 566 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D I +S+QRYKGLGEMNA QLW+TT+NP+ R+L ++ I +A++ D FS LMGD Sbjct: 567 DAIAEEFNGSVSIQRYKGLGEMNAEQLWDTTMNPEFRTLRQITIDNATETDRTFSMLMGD 626 Query: 784 EVEPRREFIQENSLPSALD 802 EV PR+EFI++N++ + +D Sbjct: 627 EVPPRKEFIEKNAVYANID 645 >gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565] gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565] Length = 652 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 292/603 (48%), Positives = 393/603 (65%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCTHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRGGKIYQQEYEIGKPLYSVKEVG-TSDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + + + G+ FV Sbjct: 179 DGSIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + LS +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLSYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S+E Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESEE 478 Query: 474 IGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG + +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKND 586 NG+LYI PPLY T+GK +Y + L++++ E G ++ Sbjct: 539 QNGYLYIATPPLYLCTKGKVKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWS 601 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 12/274 (4%) Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + + + + + + K S + + + ++ + Sbjct: 386 KVILAATARHAARKAREMVQRKSPMSGGGLPGKLADCSDKDPSKCELFLVEGDSAGGTAK 445 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +E+A+ E + I +L + + EK Sbjct: 446 QGRN-RMFQAILPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEDDSKEANIEKL 504 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + I + V + F F + I + + L L G Sbjct: 505 RYHKI------IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCTKGK 557 Query: 713 -KIKITGPCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K L + I + G + +QRYKGLGEMNA QLW TT++P+ R L +V I Sbjct: 558 VKEYCWTDAQLQNFIDTYGGGSESAVHIQRYKGLGEMNAEQLWSTTMDPENRMLKQVNID 617 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +A++AD +FS LMG++V PRREFI+EN+ + +D Sbjct: 618 NAAEADYIFSMLMGEDVGPRREFIEENATYANID 651 >gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|253568817|ref|ZP_04846227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14] gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482] gi|251840836|gb|EES68917.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14] Length = 653 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 288/604 (47%), Positives = 389/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-IKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-VSDITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAF 232 IF+ ++Y L RLREL++LN+ ++ISL ++ + + + G+ F Sbjct: 179 DDTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G Sbjct: 239 VRFIESSREHLINDVIYLNSEKQGIPIEIAIMYNTGFSENVHSYVNNINTIEGGTHLAGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RRALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPG Sbjct: 359 MGAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S Sbjct: 419 KLADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESD 478 Query: 473 EIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG IG + +I KLRYHKIIIMTDADVDG+HI TL++TFFFR MP + Sbjct: 479 EIRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 IQNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGLENAVHTQRYKGLGEMNAQ 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 41/66 (62%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++PD R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 587 QRYKGLGEMNAQQLWETTMDPDNRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 646 Query: 797 LPSALD 802 + +D Sbjct: 647 TYANID 652 >gi|72388589|gb|AAZ67938.1| DNA gyrase subunit B [Psychrobacter arcticus] Length = 731 Score = 617 bits (1590), Expect = e-174, Method: Composition-based stats. Identities = 320/722 (44%), Positives = 441/722 (61%), Gaps = 49/722 (6%) Query: 44 MIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRL 103 M++EV+DN+IDE+L G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT L Sbjct: 7 MVFEVVDNSIDEALAGHCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTVL 66 Query: 104 HAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG 163 HAGGKF+ SYKVSGGLHGVGVSVVNALS L++ I REG + ++ +G+ D+ + Sbjct: 67 HAGGKFDDNSYKVSGGLHGVGVSVVNALSKKLEMNIWREGYHHHQTYTDGVPDSDIQQ-M 125 Query: 164 SAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITM 223 A + TGT++ F PS+D+F+ F YD L RLRELSFLNS V+I L D+R + E Sbjct: 126 EATDQTGTQIRFYPSNDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--F 183 Query: 224 FYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 +KGG+ FVSY++ K + I D IS+++A++W D Y+E V CFTNNIPQ+ Sbjct: 184 EHKGGLSEFVSYINAGKDGINDVFHFISNQEDGISVEVALQWTDTYNEKVFCFTNNIPQR 243 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTHLSG RSALTR + +Y+++ KK+K GDD REG T+++S+K+PDP+FSSQT Sbjct: 244 DGGTHLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQT 303 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K+KLVSSEV+S VES ++D + +L+E+P K+I K++DA+ RDAAR+AR++TRRK Sbjct: 304 KDKLVSSEVKSAVESAMHDKFNDYLQENPSAGKLIAGKIIDAARARDAARKAREMTRRKT 363 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERA Sbjct: 364 TLDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERA 423 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 RFDKMLSSQE+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFR Sbjct: 424 RFDKMLSSQEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFR 483 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 Q P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ I+ Sbjct: 484 QTPELIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISADAPAIT 543 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANR 641 L ++D + + + ++ + + + D++ + L + Sbjct: 544 GQALETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDKDAMQAWKDTLQTQ 603 Query: 642 LNFIAE---------------------------------KSEKSWHGSINNSDI------ 662 L + E+ I Sbjct: 604 LEHFGSDSNPEIELVNIHAPQPKNMDAAAADLLGMKPVIEVEEGNSSEAEAPSIKAQWLP 663 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-----GDKIKIT 717 + + ++L+ S I S S + I + Sbjct: 664 RITVYVHQLAHHYLLDASFINSGEYTKLLRLSAEWNTLLDVDAFIRREATAGTSKDIPVR 723 Query: 718 GP 719 Sbjct: 724 DF 725 >gi|332521582|ref|ZP_08398035.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4] gi|332042671|gb|EGI78871.1| DNA gyrase, B subunit [Lacinutrix algicola 5H-3-7-4] Length = 649 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 289/604 (47%), Positives = 399/604 (66%), Gaps = 14/604 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MSD + +Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L Sbjct: 1 MSDKKEEFNKHNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+ D ITVT+N D S T D+GRGIP DLHK+EGISA EV+MT++ AGGKF++ SYKVS Sbjct: 60 AGHCDNITVTINEDNSITTEDDGRGIPVDLHKKEGISALEVVMTKIGAGGKFDKDSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS L + R G I+E + G P+ G + GT VTF P Sbjct: 120 GGLHGVGVSCVNALSEHLTATVYRNGKIWEQEYERGKSLYPVKAIGDT-DKRGTIVTFKP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232 IF+ ++NYDTL R+REL++LN + + LIDKRS + T + G++ F Sbjct: 179 DPTIFTQTLEYNYDTLASRMRELAYLNKGITVHLIDKRSKKEDGSYEGETFHSEEGLKEF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 + +LD ++PLM+ I +G ++ + +++AM +N Y EN+ + NNI +GGTHLSG Sbjct: 239 IKFLDATREPLMKDVISFEGEKNGVPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R LT + Y ++S K K + GDD REG T+++S+K+ +P+F QTK KL + EV Sbjct: 299 RRGLTHTLKKYADESGMLDKLKFDIAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + V V++ LS +LEE+P +AK IV+KV+ A+ R AA++AR++ +RK V+ I LPG Sbjct: 359 SAAVSQSVSEMLSDYLEENPEDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL+DCSE+DP K E++LVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++ Sbjct: 419 KLSDCSEQDPAKCEVYLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMTHKVFENE 478 Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG IG + +KLRYHKI+IM DAD+DG+HI TL+LTFFFR M L Sbjct: 479 EIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKEL 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 I NG +YI PPLY I +G QY ++E + + S +I+ + + ++ Sbjct: 539 IENGHIYIATPPLYLIKKGAKKQYAWNDEERKAIMQEFGESSKIQRYKGLGEMNAEQLWD 598 Query: 589 NFID 592 ++ Sbjct: 599 TTMN 602 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + S + Sbjct: 457 LPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V + + F F + I + I L LI G K + Sbjct: 511 VIMCDADIDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLIKKGAKKQYAWNDEER 569 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 I + +QRYKGLGEMNA QLW+TT+NP+ R+L ++ I + +AD +FS LMGD Sbjct: 570 KAIMQEFGESSKIQRYKGLGEMNAEQLWDTTMNPEFRTLRQIHIDNGVEADRVFSMLMGD 629 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N++ + +D Sbjct: 630 EVPPRREFIEKNAIYANID 648 >gi|89890612|ref|ZP_01202122.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7] gi|89517527|gb|EAS20184.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7] Length = 646 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 281/622 (45%), Positives = 401/622 (64%), Gaps = 12/622 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ S Y AD IQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEENNKSGYGADQIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + ITV +N D S TV+D+GRGIP +HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CNNITVAINEDNSITVTDDGRGIPVGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS LK + R+G I+E + G P+ G + GT+VTFLP Sbjct: 120 HGVGVSCVNALSDHLKATVYRDGKIWEQEYERGKAMYPVKAIGDT-DKRGTDVTFLPDRS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVSY 235 IF+ F+Y+TL +RLREL+FLN +++ L DKR + + G++ F+ + Sbjct: 179 IFTQTTEFSYETLANRLRELAFLNKGIKVILTDKRQKDEDGNFVTDVFQSEEGLKEFIRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++P++ I ++G ++ I +++AM +ND Y EN+ + NNI +GGTHL+G R Sbjct: 239 LDDTRQPIIADVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTSTLKKYADASGLLDKLKFDIAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V+ L A+LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ LPGKL+ Sbjct: 359 VSQAVSQMLEAYLEENPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMSGGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP E+FLVEGDSAGG+AKQGR RE QAI+PLRGKILNVE+A K+ ++EI Sbjct: 419 DCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAIMPLRGKILNVEKAMTHKVFENEEIR 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + KLRYHK++IM DAD+DG+HI TL+LTFFFR M +I Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADIDGSHIATLILTFFFRYMREMIEK 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI PPLY + +G +Y ++ +D + I+ + + + + Sbjct: 539 GYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFGGGVNIQRYKGLGEMNADQLWDTTM 598 Query: 592 D-DALKIDKLIKDFYPNHDKTF 612 + + + ++ D P D+ F Sbjct: 599 NPEFRTLRQVTIDSLPEADRIF 620 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 7/128 (5%) Query: 679 GSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRKGI 734 + I +F +Y R IE+ Y+ L L+ G K + D I G+ Sbjct: 521 ATLILTFFFRYMREM---IEKGYIYIATPPLYLVKKGAKKRYAWSDKERDDIADSFGGGV 577 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMNA QLW+TT+NP+ R+L +V I +AD +FS LMGDEV PRREFI++ Sbjct: 578 NIQRYKGLGEMNADQLWDTTMNPEFRTLRQVTIDSLPEADRIFSMLMGDEVPPRREFIEK 637 Query: 795 NSLPSALD 802 N++ + +D Sbjct: 638 NAIYANID 645 >gi|257462460|ref|ZP_05626872.1| DNA gyrase subunit B [Fusobacterium sp. D12] gi|317060117|ref|ZP_07924602.1| DNA gyrase subunit B [Fusobacterium sp. D12] gi|313685793|gb|EFS22628.1| DNA gyrase subunit B [Fusobacterium sp. D12] Length = 638 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 271/586 (46%), Positives = 392/586 (66%), Gaps = 5/586 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A +I +L+GL+AV+KRP MYIG T GLHH+++EV+DN++DE+L GY + ITV+ Sbjct: 2 NNYGAQNITVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEVVDNSVDEALAGYCNRITVS 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D V DNGRGIP D+H + G SA E+++T LHAGGKF +YKVSGGLHGVG+SV Sbjct: 61 ILPDNIIQVEDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGISV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQ 185 VNALS W ++++KREGN+Y ++ G + + AG TGT VTF P +IF Sbjct: 121 VNALSEWTEVKVKREGNVYYQKYLRGKPIEDVKIISALEAGETTGTIVTFKPDIEIFETV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y+ LQHRL+EL++LN ++I+L+D R+ ++ + ++GGI F+ + + + L+ Sbjct: 181 IFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQFEGGISDFLKEVTQENQTLLS 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I I+G + + +D+A + G E + F NNI +GG+H++G R+ LT+ I + Sbjct: 241 KQIHIEGQAEQVGVDIAFTYTTGQSEIIYSFVNNINTTEGGSHVTGFRTCLTKVINDIGK 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ + G D REG +++S+K+P P+F QTK KL +SEV +V + ++ L Sbjct: 301 SQGFLKEKDGKLQGGDIREGIVAIISVKVPQPQFEGQTKTKLGNSEVSGIVNTVLSTDLK 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P + K+I++K+L++ R+AA+RAR+ RK VL++ SLPGKLADCS + P++ Sbjct: 361 IFLEDNPNDTKLIIEKILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKPEEC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+A K L S EI ++TA GT I Sbjct: 421 EIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLHKALESDEIRAMVTAFGTNI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++SFD+ KLRY KII+MTDADVDGAHIRTL+LTF +R M LIHNG +YI +PPLY ++ Sbjct: 481 GEESFDLEKLRYGKIILMTDADVDGAHIRTLILTFLYRYMVDLIHNGNVYIAQPPLYKVS 540 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 GKS++Y + L++ L + G ++ L Sbjct: 541 FGKSIRYAYTDSQLKEMLQGMEGENKKYTLQRYKGLGEMNPEQLWE 586 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 104/267 (38%), Gaps = 10/267 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + F+ + K Sbjct: 376 KILNSKKAREAAQRAREAVLRKSVLEVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAK 435 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLN-FIAEKSEKSWHGSINNSD 661 + + + + + N E + ++ + F E+S+ Sbjct: 436 QGRDRYFQAIL--PLKGKILNVEKAGLHKALESDEIRAMVTAFGTNIGEESFDLEKLRYG 493 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILSLICNGDKIKITGPC 720 ++ V + + I +F +Y + N L + G I+ Sbjct: 494 KIILMTDADVDGAHI--RTLILTFLYRYMVDLIHNGNVYIAQPPLYKVSFGKSIRYAYTD 551 Query: 721 SLLDTIFS--IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 S L + G K ++QRYKGLGEMN QLWETT++P+ R LL+V I +A +AD LF Sbjct: 552 SQLKEMLQGMEGENKKYTLQRYKGLGEMNPEQLWETTMDPEARLLLKVSIDNAREADMLF 611 Query: 778 SRLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD+VEPRREFIQE++ +DI Sbjct: 612 DKLMGDKVEPRREFIQEHAEYVKNIDI 638 >gi|213622636|ref|ZP_03375419.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 646 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 306/647 (47%), Positives = 422/647 (65%), Gaps = 11/647 (1%) Query: 166 GNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 + TGT V F PS + F+ +F Y+ L RLRELSFLNS V I L DKR + Sbjct: 2 TDKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFH 59 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 Y+GGI+AFV YL+++K P+ + +D I +++A++WNDG+ EN+ CFTNNIPQ+D Sbjct: 60 YEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRD 119 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTHL+G R+A+TR + +Y++K SKK K S GDD REG +V+S+K+PDP+FSSQTK Sbjct: 120 GGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTK 179 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 +KLVSSEV+S VE +N+ LS +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG Sbjct: 180 DKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGA 239 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 LD+A LPGKLADC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+AR Sbjct: 240 LDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKAR 299 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 FDKMLSSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQ Sbjct: 300 FDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQ 359 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 MP ++ G +YI +PPLY + +GK QY+KD+E+++ Y I+ +L +S Sbjct: 360 MPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSG 419 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRL 642 L + + K+I K +++ V D++ + L L Sbjct: 420 EALEKLVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITEL 479 Query: 643 NFIAE-----KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 N + K + + N + +V+ GV + L+ + + ++ Sbjct: 480 NEKEQHGSQWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKL 539 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNP 757 + + +T L+ + R+G+++QRYKGLGEMN QLWETT++P Sbjct: 540 RGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDP 599 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 ++R +LRV + DA AD LF+ LMGD VEPRR FI+EN+L + +DI Sbjct: 600 ESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAANIDI 646 >gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1] gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1] Length = 640 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 279/649 (42%), Positives = 389/649 (59%), Gaps = 16/649 (2%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ +SSY I +L+GL+AV++RP MYIGDT GLHH +YE++DN++DESL Sbjct: 1 MTEVQTPQADSSYGESGIVVLEGLEAVRRRPGMYIGDT-TVRGLHHCVYEIVDNSVDESL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY ITVT+ D S +V+D+GRGIP ++H + G S E ++T LHAGGKF+ +SYKVS Sbjct: 60 AGYCGHITVTIGTDESVSVTDDGRGIPVEIHHQTGKSTVETVLTVLHAGGKFDNRSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS WL++ + R+G Y + GI PL T + GT V FL Sbjct: 120 GGLHGVGVSVVNALSEWLEVTVWRDGYEYFQRYERGIPVAPLAKTLPST-RRGTRVRFLA 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S IF ++ +TL R RE++FL + I + E + T +GGI FV YL+ Sbjct: 179 DSQIFDEVQYSAETLVSRFREMAFLIPGLTI--TVEDQREGKTWTFCEEGGIAEFVRYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R + L P+ + G RD +S+++A ++ D Y+E + F N I +GGTH++GLRSALT Sbjct: 237 RDRVVLFPEPLVVSGERDGVSVEMAFQYTDDYNERLFSFANLIHTVEGGTHVAGLRSALT 296 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + ++ ++ ++ G+D REG T V+S+K+ +P+F QTK KL + V+ V+ Sbjct: 297 RAVNEGARRAGALREKDENLSGEDLREGLTCVVSVKLSNPQFEGQTKTKLGNGTVKGSVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S + DGL +E K IV K + A R+AA++AR+L RK + SLPGKLADC Sbjct: 357 SVIYDGLLGHFDEDSSALKPIVDKAVKARQAREAAKKARELV-RKSAMSGLSLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S + ++ E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LSS+EI + Sbjct: 416 SSKKAEECEVYIVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKARLDKILSSKEIRVI 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALG GIG D FD++KLRYHKIIIMTDADVDGAHI TLLLTFFFR M L+ G +Y+ Sbjct: 476 IQALGCGIG-DEFDLSKLRYHKIIIMTDADVDGAHISTLLLTFFFRHMKELVEEGHVYLA 534 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDAL 595 PPLY + GK + Y+ + L + + + + G ++ L Sbjct: 535 VPPLYRVQSGKKVDYLYSDRQLRTLMDSYEVEGKSPAVQRYKGLGEMNPEQLWET----- 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + I + + + + + N Sbjct: 590 TMDPATRLLKRIQVDDAIAADEYFSILMGDKVEPRRDFIQTHAHEVRNL 638 Score = 167 bits (423), Expect = 8e-39, Method: Composition-based stats. Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 2/86 (2%) Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +L+D+ G K ++QRYKGLGEMN QLWETT++P TR L R+++ DA AD+ FS Sbjct: 556 LRTLMDSYEVEG-KSPAVQRYKGLGEMNPEQLWETTMDPATRLLKRIQVDDAIAADEYFS 614 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+VEPRR+FIQ ++ LD+ Sbjct: 615 ILMGDKVEPRRDFIQTHAHEVRNLDV 640 >gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23] gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23] Length = 652 Score = 616 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 288/603 (47%), Positives = 387/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V +N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVIINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 + IF+ ++Y L RLREL++LN+ ++ISL D+R + + + G+ FV Sbjct: 179 DNTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKGEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVQEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++D K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDATKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG D KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645 Query: 797 LPSALD 802 + +D Sbjct: 646 TYANID 651 >gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 640 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 297/588 (50%), Positives = 415/588 (70%), Gaps = 6/588 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++ SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE++ GY D Sbjct: 5 TMEQQSYDESQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEAMAGYCDT 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ITVT+ D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGLHGV Sbjct: 64 ITVTIEEDNSITVEDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L++ + +G ++ F G+ L V G + TGT + F P ++IF+ Sbjct: 124 GASVVNALSTKLEVEVHLDGKVHYQMFERGVPSADLKVIGET-DKTGTIIKFKPDNEIFT 182 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++YDTL +RLREL+FLN ++I + DKR+ + Y+GGI +FV +L+R K+P Sbjct: 183 ETTEYDYDTLANRLRELAFLNRGLRILISDKRNDGKKAEYF-YEGGISSFVEHLNRTKEP 241 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + P+ I+ +D IS+++AM++ND + N+ F NNI +GGTH SG ++ALTR I Sbjct: 242 IHEPPVFIESEKDGISVEIAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTRVIND 301 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K+ K+ ++IGDD REG T+++S+K+PDP+F QTK KL +SE R++ +S ++ Sbjct: 302 YARKNSLFKETDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSE 361 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 ++ ++ E+P A+ IV+K + AS RDAA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 362 HMAKYMAENPNVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCSSKDA 421 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+LS+ E+ +ITALG Sbjct: 422 TISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAIITALG 481 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFF+R M L+ G++YI +PPL+ Sbjct: 482 TGIGGD-FDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLLEEGYVYIAQPPLF 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 I +GK++QY +E+ +E + + + + G ++ L Sbjct: 541 KIQQGKTVQYAYNEKEMERIIKELAETPKPGLQRYKGLGEMNPTQLWE 588 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 39/334 (11%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557 TD ++ G +R L ++P G + + +Y+ + Sbjct: 312 TDPNLIGDDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFSEHMAKYMAENP 371 Query: 558 SLEDYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHD 609 ++ ++ + + K + + L + D D I + Y Sbjct: 372 NVARKIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCSSKDATISELYIVEG 431 Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663 + A + ++ + + + +RL+ I +E G + DI Sbjct: 432 DSAGGSAKQGRDRHFQAILPLRGKILNVEKSRLDKILSNNEVRAIITALGTGIGGDFDIS 491 Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENY----LTILSLICNGDKI 714 R + + ++G+ I + F +Y R +EE Y L I G + Sbjct: 492 KARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPL---LEEGYVYIAQPPLFKIQQGKTV 548 Query: 715 KITGPCSLLDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 + ++ I + G+ QRYKGLGEMN +QLWETT++P TR+ L+V + DA Sbjct: 549 QYAYNEKEMERIIKELAETPKPGL--QRYKGLGEMNPTQLWETTMDPSTRTTLQVTLEDA 606 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+ F LMGD+VEPRREFIQ N+ LDI Sbjct: 607 MVADETFETLMGDKVEPRREFIQANAQYVKNLDI 640 >gi|332798030|ref|YP_004459529.1| DNA gyrase subunit B [Tepidanaerobacter sp. Re1] gi|332695765|gb|AEE90222.1| DNA gyrase, B subunit [Tepidanaerobacter sp. Re1] Length = 635 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 299/586 (51%), Positives = 407/586 (69%), Gaps = 7/586 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + YD + I++L+G++ V+ RP MYIG TD GLHH++YEV+DN+IDE++ GY I Sbjct: 3 KKNVYDENKIEVLEGIEHVRLRPGMYIGSTDS-RGLHHLVYEVVDNSIDEAMAGYCKNIK 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N D S TV D+GRGIP + + G SA EV +T LHAGGKFN YKVSGGLHGVGV Sbjct: 62 VTINKDNSVTVEDDGRGIPVKIQPKVGKSALEVALTMLHAGGKFNSGGYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALSSW+++ +KR+G I+ + G ++ G +TGT++TF+P ++IF Sbjct: 122 SVVNALSSWMEVEVKRDGGIFYQKYERGKPVTDVIRKGDTE-ETGTKITFMPDNEIFEDT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+ D L RLRE +FLN ++I L D+R+ Y+GGI +FV YL+R + L + Sbjct: 181 VFSQDILTQRLREQAFLNRGIRIELFDERTGNSN--VFHYEGGIVSFVKYLNRKRDVLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI + +RD++ +++AM++ND Y E VL F NNI +GGTHLSG R+ALTR + Y+ Sbjct: 239 KPIYMSAARDDMEVEVAMQYNDSYLETVLTFANNINTHEGGTHLSGFRTALTRSMNDYMR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K+ ++ G+D REG T+V+S+K+ +P+F QTK KL +SE+RS+V++ V +G+S Sbjct: 299 KMNLLKEQDANLSGEDVREGLTAVISVKLTNPQFEGQTKTKLGNSEIRSLVDTVVGEGIS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P A++IV+K L A+ R+AAR+AR+LTRRK L+ +LPGKLADC ERDP+ Sbjct: 359 RFLEENPAIARVIVEKALGAARAREAARKARELTRRKTALEHTTLPGKLADCRERDPRLC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR + QAILPLRGKILNVE+AR DK+L+++EI ++ITALGTGI Sbjct: 419 ELYLVEGDSAGGSAKQGRDPQIQAILPLRGKILNVEKARMDKILNNEEIRSMITALGTGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ FDI KLRYHKII+M DADVDGAHIRTLLLTFF+R M LI G +YI +PPLY + Sbjct: 479 GEE-FDIEKLRYHKIILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVV 537 Query: 546 RGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589 GK Y D+ L + S G ++ L Sbjct: 538 LGKKDYYAFDDLELSKILESLGNSRERAEIKRFKGLGEMAAEQLWE 583 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 14/203 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N E + + +L + + + + K + Sbjct: 444 LPLRGKILNVEKARMDKILNNEEIRSMITALGTGIGEEFDIEKLRYHK-----------I 492 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + I + +I + ++ L Sbjct: 493 ILMADADVDGAHIRTLLLTFFYRYMQPLIEAGKIYIAQPPLYRVVLGKKDYYAFDDLELS 552 Query: 724 DTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + S+G R+ ++R+KGLGEM A QLWETT+NP+TR++L+V + DA AD++F+ LM Sbjct: 553 KILESLGNSRERAEIKRFKGLGEMAAEQLWETTMNPETRTILKVSLEDAVAADEIFTILM 612 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD+VEPRR+FI E++ LDI Sbjct: 613 GDKVEPRRQFIFEHAAEVQNLDI 635 >gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1] gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae] gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1] Length = 636 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 278/585 (47%), Positives = 392/585 (67%), Gaps = 4/585 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +Y + +IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DN+IDE++ GY IT Sbjct: 3 AEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GAQGLHHLVYEVVDNSIDEAMAGYCKNIT 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ V D+GRGIP D+H + ISA EV+MT+LHAGGKF+ ++YKVSGGLHGVGV Sbjct: 62 VTIKKGNIIQVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L + ++G +Y + GI + P+ G TGT VTF +IF Sbjct: 122 SVVNALSTELIAEVNKDGKLYRQVYHRGIPEEPVKEVG-TSKKTGTTVTFKADDEIFETT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++Y L +RLREL+FLN ++I+L D+R E +Y+GGIE F+++L+ +KK L Sbjct: 181 VYDYKILANRLRELAFLNRGIRITLKDEREAEVVSNEFYYEGGIEMFITHLNENKKALHD 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI + + D +++AM++ D Y+EN+ + NNI +GGTHL G R+ALTR T + + Sbjct: 241 KPIYLHKNEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVYTDFAK 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K KK+K + +G+D REG +V+S+K+P+P+F QTK KL ++EVR+V E V +GL+ Sbjct: 301 KLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLVVEGLN 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 + ++P K I++K++ A+ R+AAR+ARDL RRK L+ SLPGKLADCSE++ K Sbjct: 361 DYFSQNPKVIKAILEKIISAAQAREAARKARDLARRKNALESDSLPGKLADCSEQEVDKC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGG+AK GR R QAILPLRGK+LNVE+AR DK++ ++ + +I ALG G+ Sbjct: 421 EVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDNESLKPIIAALGCGV 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G FDI+K+RY ++IIM DAD+DG+HIRTLLLTFFFR M LI G ++I PPLY I+ Sbjct: 481 GAS-FDISKIRYGRVIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPPLYKIS 539 Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K Y +E + L + G ++ + L Sbjct: 540 FDKKNFLYAYSDEQRDKILAENKDRKYDIQRYKGLGEMNADQLWE 584 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 2/82 (2%) Query: 724 DTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D I + + + +QRYKGLGEMNA QLWETT+NP+TR + +V DA +AD LFS LMG Sbjct: 555 DKILAENKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMG 614 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 DEV+PRR+FI+ N+ LD+ Sbjct: 615 DEVKPRRDFIESNARYVKNLDV 636 >gi|332292569|ref|YP_004431178.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332170655|gb|AEE19910.1| DNA gyrase, B subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 647 Score = 615 bits (1586), Expect = e-173, Method: Composition-based stats. Identities = 286/598 (47%), Positives = 395/598 (66%), Gaps = 11/598 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD+ + Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSDDAKKKEYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N + S T DNGRGIP LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDAIDVTINENNSITTRDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ L+ + +EG I+E + G P+ V G + TGTEVTFLP Sbjct: 120 HGVGVSCVNALSNHLRATVYKEGKIWEQEYERGKAMYPVKVIGDT-DFTGTEVTFLPDDS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF ++YDTL RLREL++LN + I+L DKR E T K G+ FV + Sbjct: 179 IFQQTTEYSYDTLASRLRELAYLNKGITITLTDKRVKNEKGEHETETFHSKEGLSEFVRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ P++ I ++G ++ I +++AM +ND Y EN+ + NNI +GGTHL+G R Sbjct: 239 LDGNRTPIIGEVISMEGEKNGIPVEVAMIYNDSYAENLHSYVNNINTHEGGTHLAGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + + + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTGSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V + + ++EE+P +AKIIV+KV+ A+ R AA++AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQAVAEMIEIYMEENPNDAKIIVQKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP E+FLVEGDSAGG+AKQGR RE QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSETDPTLCEVFLVEGDSAGGTAKQGRDREFQAILPLRGKILNVEKAMSHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M L+ N Sbjct: 479 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMKELVEN 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G++YI PPLY + +G+ QY +++ + + G ++ L + Sbjct: 539 GYVYIATPPLYLVKKGQKKQYAWNDKERDAIADSMGTQGVSIQRYKGLGEMNAEQLWD 596 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 1/102 (0%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L L+ G K + D I +G +G+S+QRYKGLGEMNA QLW+TT+NP+ R+ Sbjct: 546 PPLYLVKKGQKKQYAWNDKERDAIADSMGTQGVSIQRYKGLGEMNAEQLWDTTMNPEFRT 605 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 L +V I + ++AD +FS LMGDEV PRREFI++N++ + +D+ Sbjct: 606 LRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAIYANIDV 647 >gi|193215259|ref|YP_001996458.1| DNA gyrase subunit B [Chloroherpeton thalassium ATCC 35110] gi|193088736|gb|ACF14011.1| DNA gyrase, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 644 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 295/596 (49%), Positives = 415/596 (69%), Gaps = 11/596 (1%) Query: 1 MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ ++ Y A +IQ+L G++ V++RP+MYIGD G GLHH++YE++DN++DE+ Sbjct: 1 MSEEVKEIEKSLEYGASNIQVLDGIEHVRRRPAMYIGDV-GVRGLHHLVYEIVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY D I V + +GS V D GRGIPTD+H ++ SA +++MT + AGGKF++ +YKV Sbjct: 60 LGGYNDYIFVQIKSNGSILVRDKGRGIPTDIHPQKNTSALQLVMTVIGAGGKFDKGAYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS W ++ + REG I+ + GI P+ V G+ + GT+ TFL Sbjct: 120 SGGLHGVGASVVNALSEWCEVEVYREGKIFFQGYEKGIPKAPVSVIGTTS-ENGTKTTFL 178 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P IF ++F YDTL R+REL++LN ++ I + D+R + R +KGGI+ FV+++ Sbjct: 179 PDESIFKNREFRYDTLADRMRELAYLNKNLTIVIEDER--DGRRDEFHFKGGIQEFVTFM 236 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D + L++ PI +G +D +++A ++ND Y EN + NNI +GGTH++G R AL Sbjct: 237 DSTRLKLIKEPIYFEGEKDGTVVEIAFQYNDSYQENAFSYVNNINTHEGGTHVTGFRKAL 296 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y +K+ K K S+ G+D REG T++LS+K+P+P+F QTK KL +SE +S+V Sbjct: 297 TRTLNYYGQKNDLFKNLKISLTGEDFREGLTAILSVKVPEPQFEGQTKTKLGNSETQSIV 356 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES VN+ L+ ++E+HP E KII++KV+ A++ RDAAR+A+DLTRRK L+ +SLPGKLAD Sbjct: 357 ESIVNEKLAEYIEQHPNEVKIILEKVVSAAIARDAARKAKDLTRRKSALESSSLPGKLAD 416 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS DP+ EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR +KML ++EI T Sbjct: 417 CSINDPEHCELYIVEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKARLNKMLENEEIRT 476 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LI ALGT IG+D FD ++LRY KII+MTDADVDGAHIRTLLLTFFFR M L+ G ++I Sbjct: 477 LIMALGTSIGEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGLVEGGRVFI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI---ELFCDSKGVISKNDLRN 589 +PPLY I GK Y D++ +D L + + G ++ + L + Sbjct: 537 AQPPLYLIKSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNADQLWS 592 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + S ++ V + F F + R+ L LI Sbjct: 486 GEDEFDASRLRYGKIILMTDADVDGAHIRTLLLTFFFRYMRGLVEGGRVF-IAQPPLYLI 544 Query: 709 CNGDKIKITGPCSLLDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 +G + D I G++ +QRYKGLGEMNA QLW TT++P+ R+LL Sbjct: 545 KSGKQQWYAWDDDERDDILKQFEVKGKENYGIQRYKGLGEMNADQLWSTTMDPEKRTLLM 604 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V I +A +AD +FS LMGD+VEPRR FI+ N+ LD+ Sbjct: 605 VTIENAMEADKIFSTLMGDQVEPRRAFIETNAKYVRRLDV 644 >gi|170287901|ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. RQ2] gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2] Length = 636 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 277/589 (47%), Positives = 374/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE L GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEVLAGYCDWIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G P+ V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GGI +V YL+R KK L Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237 Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D + +++A ++ D Y E+++ F N I DGGTH++ +S LTR + Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K S G+D REG T+V+S+ + +P F QTK KL + EV+ V + Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + +P K I+ K++ R+AA+RAR++ RRK VL +LPGKLADCS Sbjct: 357 REELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++ D++L +++I +I A Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M LI G +YI PP Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I G+ YV ++ L +Y G ++ L Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++++ + + + S ++ + + Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGRIIIMTDADIDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + I R+ + + ++ + L + + K I +QRYK Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG++ RREFI+ ++L Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632 Query: 800 ALDI 803 LDI Sbjct: 633 ELDI 636 >gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108] gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108] Length = 657 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 279/607 (45%), Positives = 388/607 (63%), Gaps = 19/607 (3%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + ++Y A +IQ+L+GL+AV+KRP+MYIGD E+GLHH++YEV+DN+IDE++ Sbjct: 1 MTEEEKINGENNYSASNIQVLEGLEAVRKRPAMYIGDIS-ENGLHHLVYEVVDNSIDEAM 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV+MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDWHEKEQKSALEVVMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFL 176 GGLHGVGVS VNALS + ++ R G IY+ + G + G +GT+ TF Sbjct: 120 GGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGKPLYAVKEMGLCEPGLSGTKQTFW 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAF 232 P IF+V ++ + TLQ RLREL++LN ++I+L D +P + G++ F Sbjct: 180 PDDSIFTVSEYKHTTLQARLRELAYLNKGIRITLTDLRVKDEEGKPLTEYFHSEEGVKEF 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL+ + PL I + + + I+ A+ +N GY EN+ + NNI ++GGTH G Sbjct: 240 VRYLNSNNTPLFDDVIYLNTEKSGVPIECAIMYNTGYRENLHSYVNNINTREGGTHEGGF 299 Query: 293 RSALTRQITSYVEKS--FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 R+ALTR + Y + + +K K + G+D REG +V+S+K+ +P+F QTK KL ++ Sbjct: 300 RAALTRVLKKYADDNCSKALEKAKVEISGEDFREGLIAVISVKVSEPQFEGQTKTKLGNN 359 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV V V + LS +LEEHP EAK+IV KVL A+ R AAR+AR+ +RK + + Sbjct: 360 EVSGAVNQAVGEALSNYLEEHPKEAKVIVDKVLLAATARVAARKARESVQRKSPMSGGGM 419 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS +DP++ ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A + K Sbjct: 420 PGKLADCSSKDPEECELFLVEGDSAGGSAKQGRNRAFQAILPLRGKILNVEKAMWHKAFE 479 Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 S E+ +I ALG G +I+KLRY K+IIMTDADVDG+HI TL++T FFR Sbjct: 480 SDEVNNIIQALGIRFGVDSEDSKEANIDKLRYKKVIIMTDADVDGSHIDTLIMTLFFRYF 539 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVI 582 P +I NG+LYI PPLY ++GK +Y ++ + ++ E + G + Sbjct: 540 PQVIQNGYLYIATPPLYLCSKGKVKEYCWTDQQRQKFIDAYGGGSENAIHTQRYKGLGEM 599 Query: 583 SKNDLRN 589 + + L Sbjct: 600 NPDQLWE 606 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 52/66 (78%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP+ R L +V + +A++AD +FS LMG++V PRR+FI+ N+ Sbjct: 591 QRYKGLGEMNPDQLWETTMNPENRMLKQVHLENAAEADYVFSMLMGEDVGPRRDFIESNA 650 Query: 797 LPSALD 802 + +D Sbjct: 651 TYANID 656 >gi|221195249|ref|ZP_03568305.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626] gi|221185152|gb|EEE17543.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626] Length = 649 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 283/601 (47%), Positives = 390/601 (64%), Gaps = 16/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + S+Y +D I +L+GL+ V+KRP MYIG T GLHH+++E++DN++DE+L G+ Sbjct: 1 MAKE-KKSNYSSDDITVLEGLEPVRKRPGMYIGTTSSA-GLHHLVWEIVDNSVDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V DNGRGIP D+H ++ I EV++T LHAGGKF+ +YKVSGGL Sbjct: 59 CTKIKVTVHADNSVSVEDNGRGIPVDIHPKKKIPTLEVVLTILHAGGKFDNSAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + +KR+G IY+M F G + G TGT +TF P Sbjct: 119 HGVGVSVVNALSKRMIAEVKRDGKIYQMEFKRGKTTQKMKEIGKTK-STGTTITFWPDDT 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +N+DTL+ RL+E +FLN +++I L D+R PR + Y GGI FV YL+ K Sbjct: 178 IFETTTYNFDTLRDRLQETAFLNKNLKIVLTDERELIPRVVEYQYAGGIIDFVKYLNDEK 237 Query: 241 KPLM--QSPIRIQG-------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 L PI I+G + +++AM+WN +++ L F N+I ++GG HL G Sbjct: 238 TVLTGLSKPIYIEGSSEPDAPTSQMGEVEVAMQWNTEFNDRTLSFANDIYTEEGGMHLEG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALT+ + Y + K+ + GDD REG T+V+S+K+PDP+F QTK KL SS Sbjct: 298 FRTALTKAVNDYGTRQGILKEKDPKLTGDDIREGLTAVISVKLPDPQFEGQTKAKLGSSY 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++ V+ GL+ +LEEHP +AK I+KK A+ R AAR+AR+ TRRKG+L+ ASLP Sbjct: 358 MRTLTNKIVSSGLAEYLEEHPNQAKEILKKATQAAKGRLAARKAREATRRKGLLESASLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DP+ +ELF+VEGDSAGGSAK R R QA+LPLRGKILNVER + + LSS Sbjct: 418 GKLADCSVKDPEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRALSS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 I +LITA+GTG+G++ F++ K RYHKI+IMTDADVDG+HIR LLLTFF+R M +I Sbjct: 478 DTITSLITAIGTGVGEE-FNLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMIDA 536 Query: 532 GFLYIIKPPLYGITRGKSLQ---YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 G++Y+ +PPLY I DEE + + S+ G + L Sbjct: 537 GYIYVAQPPLYQIKAKGKKHGKYIYTDEELAVEAKQFEDSSKYTVQRYKGLGEMDPEQLW 596 Query: 589 N 589 + Sbjct: 597 S 597 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 77/188 (40%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E Q + + + + I + ++ +V V + Sbjct: 463 ILNVERVQAHRALSSDTITSLITAIGTGVGEEFNLEKARYHKIVIMTDADVDGSHIRILL 522 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITGPCSLL--DTIFSIGRKGISM 736 F + I + I + + G K I L F K ++ Sbjct: 523 LTFFYRYMKPMIDAGYIYVAQPPLYQIKAKGKKHGKYIYTDEELAVEAKQFEDSSK-YTV 581 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEM+ QLW TT+ P R LL+V I DA AD + LMG++VE R++FIQ ++ Sbjct: 582 QRYKGLGEMDPEQLWSTTMEPKNRILLKVTIDDAMAADRAVADLMGNQVEKRKDFIQTHA 641 Query: 797 LPSA-LDI 803 LDI Sbjct: 642 KDVRFLDI 649 >gi|256419449|ref|YP_003120102.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588] gi|256034357|gb|ACU57901.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588] Length = 659 Score = 615 bits (1585), Expect = e-173, Method: Composition-based stats. Identities = 292/610 (47%), Positives = 405/610 (66%), Gaps = 23/610 (3%) Query: 1 MSDNI------QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + +S YDA SIQ+L+GL+AV+KRP+MYIGD G GLHH++YEV+DN+ID Sbjct: 1 MSEELVQAPTPASSGYDAGSIQVLEGLEAVRKRPAMYIGDI-GVKGLHHLVYEVVDNSID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L GY I+VT+ D S V+D+GRGIPT +H +EG SA EV+MT LHAGGKF++ +Y Sbjct: 60 EALAGYCKNISVTICEDNSILVTDDGRGIPTGMHPKEGRSALEVVMTVLHAGGKFDKNTY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVGVS VNALS L + ++REG ++E + G+ + G + TGT V Sbjct: 120 KVSGGLHGVGVSCVNALSDKLHVTVRREGKLFEQEYQRGVPQYAVREIG-TSDSTGTTVH 178 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIE 230 F P ++IF +N + L RLREL++LN ++I+L D R + T + +GGI Sbjct: 179 FKPDNEIFKETIYNREILAGRLRELAYLNRKIKITLTDDREKDEAGNSVTETFYSEGGII 238 Query: 231 AFVSYLDRH--KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV LDR+ + L+ PI I+ N+++++A+ +ND + EN+ + NNI +GG Sbjct: 239 EFVQMLDRNGRRNGLLPDPIFIEAHDASSNVAVEVAVIYNDSFSENIFSYVNNINTIEGG 298 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH++G R A+TR SY +K+ +K K V GDD REG ++++S+K+P+P+F QTK K Sbjct: 299 THVAGFRRAITRIFKSYGDKNKMFEKTKIEVTGDDFREGLSAIISVKVPEPQFEGQTKTK 358 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+V VV+S V L A+LEEHP EAKII+ KV+ A+ R+AAR+AR + +RK VL Sbjct: 359 LGNSDVMGVVDSSVAAVLDAYLEEHPREAKIIINKVVLAAQAREAARKARQMVQRKSVLS 418 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 + LPGKLADCSE DP+K EL+LVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A Sbjct: 419 GSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRSFQAILPLRGKILNVEKAMEH 478 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 K+ ++EI + TALG IG + D +KLRYHK+IIMTDADVDG+HI TL+LTF F Sbjct: 479 KIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLILTFIF 538 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSK 579 R M +++ G++YI +PPLY + + K Y EE + + + +E Sbjct: 539 RYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGKEDSVTIQRYKGL 598 Query: 580 GVISKNDLRN 589 G ++ L Sbjct: 599 GEMNAEQLWE 608 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 12/192 (6%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E E + ++ N + E+ +K+ + S L+ V Sbjct: 469 ILNVEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSH 528 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIG 730 + + I +F +Y + + + K +I + I Sbjct: 529 I--ATLILTFIFRYMKAMVEQGYVYIAQPPLYLVKKSKEQIYAWTEEDRKAAIAKIAGGK 586 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 +++QRYKGLGEMNA QLWETT+NPD R+L +V I A++AD +FS LMGDEV PRRE Sbjct: 587 EDSVTIQRYKGLGEMNAEQLWETTMNPDNRTLKQVTIESAAEADRVFSMLMGDEVPPRRE 646 Query: 791 FIQENSLPSALD 802 FI+ ++ + +D Sbjct: 647 FIESHAKYAKID 658 >gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f] gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f] Length = 652 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 289/603 (47%), Positives = 387/603 (64%), Gaps = 16/603 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQITPNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 Y D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 ASYCDHIEVTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G + G + TGT F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYSVKEVG-TADITGTRQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + + + G+ FV Sbjct: 179 DGTIFTETVYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKSEQFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + I I++A+ +N G+ ENV + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNSEKQGIPIEVAIMYNTGFSENVHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ V + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPGK Sbjct: 359 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS++DP K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S E Sbjct: 419 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 478 Query: 474 IGTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + TALG IG D KLRYHKIIIMTDADVDG+HI TL++TFFFR MP +I Sbjct: 479 IRNIYTALGVTIGTDEDSKEANIQKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQVI 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKND 586 NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 QNGYLYIATPPLYLCKKGKVEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQQ 598 Query: 587 LRN 589 L Sbjct: 599 LWE 601 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 54/66 (81%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 586 QRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFSMLMGEDVGPRREFIEENA 645 Query: 797 LPSALD 802 + +D Sbjct: 646 TYANID 651 >gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359] gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359] Length = 647 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 306/646 (47%), Positives = 432/646 (66%), Gaps = 13/646 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + SY AD IQ+L+GL+AV+KRP MYIG T GLHH++YEV+DN+IDE+L GY Sbjct: 11 MSEQ-KKVSYGADQIQVLEGLEAVRKRPGMYIGSTS-LKGLHHLVYEVVDNSIDEALAGY 68 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ D S TV DNGRGIP +HK G A EV++T LHAGGKF Y +SGGL Sbjct: 69 CTHIEVTIEEDNSITVVDNGRGIPVAMHKI-GKPAVEVVLTVLHAGGKFGGDGYPISGGL 127 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178 HGVG+SVVNALS ++ +KR+G ++++SF G+ N L G + GT+V F P Sbjct: 128 HGVGISVVNALSEQTEIEVKRDGFLWKISFARGLTVNSLEKVRPLEEGEERGTKVWFKPD 187 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 S+IF ++++TL+ RLREL+FLN + I+L DKR+ + +Y+GG+ +FV +L+ Sbjct: 188 SEIFPDTVYDFETLKIRLRELAFLNKGLTITLADKRTDKK--EIYYYEGGLTSFVQFLNE 245 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ P+ Q+ I ++G + ++ +D+A+++NDGY EN+L F NNI ++GGTHLSG RS LTR Sbjct: 246 NRTPVNQTVISLEGIKSDVVVDIALQYNDGYSENILTFVNNIFTEEGGTHLSGFRSGLTR 305 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y S K+++ ++ G+D REG T+++S+K+ +P+F QTK KL +SEV+ +V++ Sbjct: 306 TINDYGRSSGIIKENEDNLSGEDVREGLTAIISVKVREPQFEGQTKTKLGNSEVKGIVDN 365 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++DGL + EEHP EAK IV K ++A+ R AAR+AR+LTRRK L+I+SLPGKLADCS Sbjct: 366 IISDGLKEFFEEHPAEAKSIVTKNINAARARQAARKARELTRRKNALEISSLPGKLADCS 425 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E++P +E++LVEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+AR DK+L+++EI +I Sbjct: 426 EKNPDMTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRAMI 485 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +YI + Sbjct: 486 TAFGTGIGEE-FDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQ 544 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +G+S+ Y+ ++ L + L + G ++ L +D Sbjct: 545 PPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAVVQRYKGLGEMNPEQLWET-----TMD 599 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + +E I V + + + N Sbjct: 600 PQFRTMLKVELEDAVEADRIFSVLMGDKVEPRRKFIQDNAKKVRNL 645 Score = 172 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 3/184 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + D ++ V + Sbjct: 464 IINVEKARLDKILANEEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLL 523 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGISMQRY 739 F + I + L + G + + L + + +G + +QRY Sbjct: 524 LTFFYRFMKPLITEGHVY-IAQPPLYQVRKGRSVWYLYTDDELTNKLAEVGNENAVVQRY 582 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT++P R++L+V++ DA +AD +FS LMGD+VEPRR+FIQ+N+ Sbjct: 583 KGLGEMNPEQLWETTMDPQFRTMLKVELEDAVEADRIFSVLMGDKVEPRRKFIQDNAKKV 642 Query: 800 -ALD 802 LD Sbjct: 643 RNLD 646 >gi|257789784|ref|YP_003180390.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243] gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA] gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1] gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243] gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA] gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1] Length = 648 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 293/648 (45%), Positives = 404/648 (62%), Gaps = 22/648 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DNA+DE+L GY Sbjct: 1 MANK--PDHYDGSDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V DNGRGIP D H +E I EV++T LHAGGKF + YKVSGGL Sbjct: 58 CDEIKVWIHQDNSISVDDNGRGIPIDKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS +++++++EG Y + F +G L G GT V+F P + Sbjct: 118 HGVGVSVVNALSSRVEVQVRKEGKEYFIGFDHGKTSEKLREVGPTKRGNGTTVSFWPDPE 177 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF+ +++DTL +R RE++FLN ++I L D+R +PR Y GGI FV + Sbjct: 178 IFTETTVYDFDTLANRFREMAFLNKGLKIVLYDERVTDADGKPRTEVFQYAGGIVDFVKF 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294 L+ K+ L PI + D+ ++++AM+W+ Y N V+ F NNI +GGTHL G + Sbjct: 238 LNEGKETLN-KPIYFEAENDDGTVEVAMQWSTSYSTNSVMAFANNINTHEGGTHLDGFKQ 296 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 A+TR I Y K+ ++ GDD REG +++S+K+ DP+F QTK KL ++E+R Sbjct: 297 AVTRTINEYARSKGILKEKDSNLSGDDTREGCAAIVSVKLHDPQFEGQTKTKLGNTEIRP 356 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +V++ V GL+ +LEE+P AK I+ K A R+AAR+AR++TRRKGVLD +LPGKL Sbjct: 357 LVQNAVTQGLAEYLEENPTPAKRIIGKATQALKAREAARKAREMTRRKGVLDSFALPGKL 416 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS + P+ SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA + LSS I Sbjct: 417 ADCSSKTPENSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRSLSSDTI 476 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +LITA+GT IG D FD ++ RYH+IIIMTDADVDGAHIR LLLTFF+R MP LI+ G++ Sbjct: 477 SSLITAIGTNIG-DDFDADQSRYHRIIIMTDADVDGAHIRILLLTFFYRYMPELINRGYI 535 Query: 535 YIIKPPLYGITRGKS-----LQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLR 588 YI +PP++G+ + S +Y+ DE SL L ++ G + + L Sbjct: 536 YIAQPPIFGLKKKNSRSPKIERYIYDESSLGSVLAEYDDPNKFDVQRYKGLGEMDPDQLW 595 Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ + E + + + + Sbjct: 596 ET-----TMEPATRTLLQVSIDDAAEAERVVSDLMGDQVEPRKEFIQK 638 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+ P TR+LL+V I DA++A+ + S LMGD+VEPR+EFIQ++ Sbjct: 580 VQRYKGLGEMDPDQLWETTMEPATRTLLQVSIDDAAEAERVVSDLMGDQVEPRKEFIQKH 639 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 640 ARDVRFLDI 648 >gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678] gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678] Length = 635 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 290/585 (49%), Positives = 395/585 (67%), Gaps = 2/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G I Sbjct: 1 MTKHEYGADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +++N DGS TV D+GRGIP ++H + G+S E ++T LHAGGKF YKVSGGLHGVG Sbjct: 60 YISINPDGSVTVKDDGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS WL + R+G +Y + G+ L V + D+GT +TF+P + IF Sbjct: 120 VSVVNALSDWLVAEVSRDGKVYRQEYKRGVPTGKLEVVSESSKDSGTSITFMPDASIFDE 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F Y+TL++R RELSFLN ++I DKR + T Y GG+ ++ YL+R K P+ Sbjct: 180 IEFKYETLEYRFRELSFLNKVIKIEFEDKREGQEESKTFHYTGGLVEYIKYLNRTKTPIH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + ++ +I+LA+++ D Y EN+ F NNI +GG HLSG ++ALT+ + Y Sbjct: 240 DQIIYVDKIANDCTIELALQYTDAYTENIYSFANNINTHEGGVHLSGFKAALTKCVNDYA 299 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ K+ ++ G+D REG T+++S+K+PDP+F QTK KL ++ +R +V+S N+ + Sbjct: 300 RRNNILKEKDPNLSGEDIREGLTAIVSVKLPDPQFEGQTKTKLGNTFMRGLVDSIANEEI 359 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 A+LEE+P AK++++K L A R+AA++ARDLTRRK L+ SLPGKLADCSE+ P+K Sbjct: 360 GAFLEENPSVAKLVIEKCLRAQRAREAAKKARDLTRRKNALEFTSLPGKLADCSEKSPEK 419 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+FLVEGDSAGGSAK GR R QAILPLRGKILNVE++R DK+LSS+EI +ITA G G Sbjct: 420 SEIFLVEGDSAGGSAKSGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCG 479 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D F+ KLRYHKI+IMTDADVDGAHIRTLLLTFFFR M LI G++Y +PPL+ + Sbjct: 480 IGED-FEPEKLRYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIEGGYVYAAQPPLFKV 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GK Y + L L G ++ L Sbjct: 539 KKGKKEYYAFSDNELSSLLDEVGRQGADVSRYKGLGEMNAEQLWE 583 Score = 188 bits (477), Expect = 4e-45, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + + +V V + Sbjct: 452 ILNVEKSRLDKILSSEEIKNMITAFGCGIGEDFEPEKLRYHKIVIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + L + +GR+G + RYK Sbjct: 512 LTFFFRYMRPLIEGGYVYAAQPPLFKVKKGKKEYYAFSDNELSSLLDEVGRQGADVSRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT++P++R+LL+V I DA AD++FS LMGD+V PRR+FI+ N+ Sbjct: 572 GLGEMNAEQLWETTMDPESRTLLQVTIDDAIMADEIFSMLMGDKVAPRRDFIEANAKYVT 631 Query: 800 ALDI 803 LDI Sbjct: 632 NLDI 635 >gi|148269239|ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petrophila RKU-1] gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1] Length = 636 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 275/589 (46%), Positives = 374/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MY+G T G+ GLHH++YEV+DN++DE+L GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYVGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G P+ V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GGI +V YL+R KK L Sbjct: 180 DPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKALHDVI 237 Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D + +++A ++ D Y E+++ F N I DGGTH++ +S LTR + Sbjct: 238 HIKRTEKVKTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K S G+D REG T+V+S+ + +P F QTK KL + EV+ V + Sbjct: 298 NEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + + K I+ K++ R+AA+RAR++ RRK VL +LPGKLADCS Sbjct: 357 REELKKIFDANSDLVKAILSKIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++ D++L +++I +I A Sbjct: 417 HREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FD +KLRY +IIIMTDAD+DGAHIRTLLLT F+R M LI G +YI PP Sbjct: 477 VGTGIG-DDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I G+ YV ++ L +Y G ++ L Sbjct: 536 LYRIKAGREEFYVYSDQELAEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 3/262 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + N + + + FI + K Sbjct: 377 KIMSTKQAREAAKRAREMVRRKNVLQNTALPGKLADCSSTHREKTELFIVEGDSAGGSAK 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E + ++++ + + + S Sbjct: 437 QARDREFQAVL--PIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDESKLRYGR 494 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ + + + I R+ + + ++ + L Sbjct: 495 IIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVYSDQEL 554 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + + K I +QRYKGLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG Sbjct: 555 AEYKEKLQGKRIEIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMG 614 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 ++ RREFI+ ++L LDI Sbjct: 615 NDPSSRREFIERHALKVKELDI 636 >gi|145218835|ref|YP_001129544.1| DNA gyrase subunit B [Prosthecochloris vibrioformis DSM 265] gi|145204999|gb|ABP36042.1| DNA gyrase subunit B [Chlorobium phaeovibrioides DSM 265] Length = 642 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 284/584 (48%), Positives = 404/584 (69%), Gaps = 7/584 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A +IQ+L G+ V+ RP+MYIGD GLHH+IYE++DN+IDE+L GY D I V+ Sbjct: 12 TNYGATNIQVLDGIAHVRMRPAMYIGDIHS-RGLHHLIYEIVDNSIDETLGGYNDYIFVS 70 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS TV D+GRGIP D+H ++ SA E++MT + AGGKF++ +YKVSGGLHGVG SV Sbjct: 71 LNPDGSVTVIDHGRGIPVDIHPDKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGVGASV 130 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W ++ + R+G + + G+ + + G+ + GT+ TF+P +IF V +F Sbjct: 131 VNALSEWCEVEVYRDGKAWFQRYHRGVPEGDVKEIGATS-ERGTKTTFMPDPEIFKVTEF 189 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 D + R+REL+FLNS+++I + + E + T ++GG++ FV + D ++ L++ P Sbjct: 190 RKDIIIDRMRELAFLNSNLKIVV---QDIEGEQETFHFEGGLKEFVLFTDANRLNLIKEP 246 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I G +D+ +++A+++ND Y ENV + NNI +GGTH++G R ALTR + SY +K+ Sbjct: 247 VYIYGEKDSTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYAQKN 306 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K K ++ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VES +N+ LS + Sbjct: 307 DLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQLSDF 366 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 E +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS DP+ EL Sbjct: 367 AESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEHCEL 426 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR K+L ++EI T+I ALGT G+ Sbjct: 427 YIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKLLENEEIKTIILALGTNFGE 486 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 + F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G +YI +PPLY + G Sbjct: 487 EEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYLVKAG 546 Query: 548 KSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589 K QY D+E ++ + + G ++ L + Sbjct: 547 KDQQYAWDDEERNSIADMMRKGKANVHIQRYKGLGEMNPEQLWS 590 Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + ++ L L+ Sbjct: 485 GEEEFSQEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVY-IAQPPLYLV 543 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 G + ++I + RKG + +QRYKGLGEMN QLW TT++P+ RSLL+V Sbjct: 544 KAGKDQQYAWDDEERNSIADMMRKGKANVHIQRYKGLGEMNPEQLWSTTMDPEHRSLLQV 603 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 604 SVENAMEADKVFSTLMGDKVEPRREFIEKNARYVRRLDV 642 >gi|163755890|ref|ZP_02163007.1| DNA gyrase, B subunit [Kordia algicida OT-1] gi|161324061|gb|EDP95393.1| DNA gyrase, B subunit [Kordia algicida OT-1] Length = 645 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 282/622 (45%), Positives = 404/622 (64%), Gaps = 13/622 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ +N Y A SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEENKNQ-YSAASIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V +N D S T DNGRGIP +H+++G+SA EV+MT + AGGKF++ SYKVSGGL Sbjct: 59 CDTISVIINEDNSITTEDNGRGIPVGIHEKKGVSALEVVMTEIGAGGKFDKDSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L+ + R+G I+E + G P+ G + + GT VTF P + Sbjct: 119 HGVGVSCVNALSDHLRATVYRDGKIWEQEYERGKALYPVKAIGDS-DKRGTVVTFKPDAS 177 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF+ ++NY+TL +R+RELS+LN + I+L DKR+ E + G++ F+ Y Sbjct: 178 IFTQTLEYNYETLANRMRELSYLNKGITITLTDKRNKDEKGEYIGEVFHSQEGLKEFIKY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++ ++ + +G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 238 LDGNREQIIADVVAFEGEKNGIPVEVAMTYNTSYSENLHSYVNNINTHEGGTHLSGFRRG 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y E + K K + GDD REG T+++S+K+ +P+F QTK KL + EV + Sbjct: 298 LTHTLKKYAEGTGMLDKLKFDISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAS 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEEHP +AK IV+KV+ A+ R AA++AR++ +RK V+ I LPGKL+ Sbjct: 358 VSQAVSEMLTDYLEEHPDDAKTIVQKVVLAAQARHAAQKAREMVQRKTVMSIGGLPGKLS 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 418 DCSEQDPAKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 477 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHKI+IM DADVDG+HI TL+LTFFFR M LI N Sbjct: 478 NIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIEN 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y ++E + + I+ + + ++ + Sbjct: 538 GHIYIAAPPLYLVKKGAKRRYAWNDEERDAIIEEFGQGANIQRYKGLGEMNAEQLWDTTM 597 Query: 592 D-DALKIDKLIKDFYPNHDKTF 612 + D + +++ D D+ F Sbjct: 598 NPDFRTLRQVMIDNGGEADRVF 619 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + S + Sbjct: 453 LPLRGKILNVEKAMQHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 506 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I + I L L+ G K + Sbjct: 507 VIMCDADVDGSHIATLILTFFFRYMKELIENGHIY-IAAPPLYLVKKGAKRRYAWNDEER 565 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D I +G ++QRYKGLGEMNA QLW+TT+NPD R+L +V I + +AD +FS LMGD Sbjct: 566 DAIIEEFGQGANIQRYKGLGEMNAEQLWDTTMNPDFRTLRQVMIDNGGEADRVFSMLMGD 625 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N++ + +D Sbjct: 626 EVPPRREFIEKNAVYANID 644 >gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21] gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21] Length = 648 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 303/601 (50%), Positives = 405/601 (67%), Gaps = 17/601 (2%) Query: 1 MSDNIQNS----------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLD 50 M++ Y A+ IQ+L+GL+AV+KRPSMYIG GLHH++YEV+D Sbjct: 1 MTEKDNEKTIEEEIAVHGEYGAEQIQVLEGLEAVRKRPSMYIGSISA-RGLHHLVYEVID 59 Query: 51 NAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN 110 N+IDE+L GY D I V + D S TV DNGRGIP ++HK G A EV+MT LHAGGKF Sbjct: 60 NSIDEALAGYCDHILVEIGEDNSITVVDNGRGIPVEMHKI-GKPAIEVVMTILHAGGKFG 118 Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDT 169 YKVSGGLHGVGVS VNALS +++ +K++G IY + F G PL V G DT Sbjct: 119 DGGYKVSGGLHGVGVSCVNALSRRMEVEVKKDGKIYGIEFSKGKTVRPLYVKGECDAKDT 178 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT V F P IF+ ++Y+TL+HR+REL+FLN V+I L D RS + Y+GGI Sbjct: 179 GTSVHFWPDDTIFTETVYSYETLKHRIRELAFLNKGVKIELKDDRSG--ADEIFHYEGGI 236 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +FV Y+++ K+ + +PI ++G R + +++AM++ D Y EN+ F NNI ++GGTHL Sbjct: 237 ISFVEYINKGKEAIFNTPIYVEGERQDTIVEVAMQYTDAYTENIYTFVNNINTEEGGTHL 296 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +GL+ ALTR I Y K+ K + ++ GDD REG T VLS+K+ +P+F QTK KL + Sbjct: 297 AGLKQALTRSINDYARKNGLLKDSEENLSGDDVREGLTCVLSLKVREPQFEGQTKTKLGN 356 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SEVR +V++ V+D L+ + EE+ AK IV+K + +S R AAR+ARDLTRRK L+++S Sbjct: 357 SEVRGIVDNMVSDALNEYFEENAPTAKKIVEKAILSSRARAAARKARDLTRRKSALEVSS 416 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADCS ++ +++E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DKML Sbjct: 417 LPGKLADCSSKNAEETEIYIVEGDSAGGSAKQGRDRAFQAILPLRGKILNVEKARLDKML 476 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI ++ITA G GIG D FD++K+RY KIIIMTDADVDGAHIRTLLLTFF+R M LI Sbjct: 477 NNNEIRSMITAFGCGIG-DEFDLSKIRYGKIIIMTDADVDGAHIRTLLLTFFYRYMQPLI 535 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVK-DEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 NG ++I +PPLY I GK+ Y D+E + + G ++ L Sbjct: 536 RNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPYVQRYKGLGEMNPEQLW 595 Query: 589 N 589 Sbjct: 596 E 596 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 4/126 (3%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKG-ISMQ 737 + +F +Y + + N L LI G L + +GR+ +Q Sbjct: 522 LLLTFFYRYMQPLIRNGNVFIAQPPLYLIRTGKNHTYAYSDDELQKKLDEVGRQNNPYVQ 581 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT++P R++L+V + DA+ AD +FS LMGD+VEPRR+FI+EN+ Sbjct: 582 RYKGLGEMNPEQLWETTMDPSKRTVLQVHLEDAASADSVFSVLMGDKVEPRRQFIEENAG 641 Query: 798 PS-ALD 802 LD Sbjct: 642 KVTNLD 647 >gi|78188013|ref|YP_378351.1| DNA gyrase, B subunit [Chlorobium chlorochromatii CaD3] gi|78170212|gb|ABB27308.1| DNA gyrase subunit B [Chlorobium chlorochromatii CaD3] Length = 637 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 280/632 (44%), Positives = 407/632 (64%), Gaps = 5/632 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y A +IQ+L G++ V+ RP+MYIGD GLHH++YE++DN+IDE+L G+ D I Sbjct: 1 MPPAAYGATNIQVLDGIEHVRMRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLGGFNDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V LN DGS TV D+GRGIP D+H E+ SA E++MT + AGGKF++ +YKVSGGLHGVG Sbjct: 60 FVALNADGSITVIDHGRGIPVDMHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS W ++ + R+G Y + G+ + V G + + GT+ TF+P IF Sbjct: 120 ASVVNALSEWCEVEVYRDGKAYYQRYERGVPQGDVKVIGDS-DQRGTKTTFMPDGTIFKT 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F + + R+REL+FLN +++I + + + ++GGI FV + D+++ L+ Sbjct: 179 TEFRKEIIIDRMRELAFLNKNLRIIV---QDTNGEQEEFHFEGGICEFVRFTDQNRLNLL 235 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + PI + G RD +++A+++ND Y ENV + NNI +GGTH++G R ALTR + SY Sbjct: 236 REPIYLYGERDGTVVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNSYA 295 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K+ K K ++ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VE+ VND L Sbjct: 296 QKNDLLKNLKLTLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETVVNDQL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + E +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS DP+ Sbjct: 356 AEFAESNPNTLKLIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEH 415 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I ALGT Sbjct: 416 CELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTS 475 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 G + F + KLRY KIIIMTDADVDGAHIRTLLLTFFFR M +I G +YI +PPLY + Sbjct: 476 FGDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVYIAQPPLYLV 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 GK Y D++ + N ++ + + ++ + +D + Sbjct: 536 KSGKDQHYAWDDDERNSIVDNMKKMQKSKANIHIQRYKGLGEMNPEQLWSTTMDPAHRSL 595 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +E + + + + Sbjct: 596 LLVSVENAMEADQVFSTLMGDKVEPRREFIEK 627 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 ++ + ++ V + F F I + R+ L L+ Sbjct: 477 GDEEFAVEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRPVIEAGRVY-IAQPPLYLV 535 Query: 709 CNGDKI-------KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +G + + + I +QRYKGLGEMN QLW TT++P RS Sbjct: 536 KSGKDQHYAWDDDERNSIVDNMKK-MQKSKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 594 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL V + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 595 LLLVSVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 637 >gi|330813294|ref|YP_004357533.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063] gi|327486389|gb|AEA80794.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063] Length = 696 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 329/602 (54%), Positives = 426/602 (70%), Gaps = 26/602 (4%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS N++ SY ADSI++LKGLDAV+KRP MYIGDTD +GLHHMI+EV+DN+IDE+ Sbjct: 1 MSKNLKKIEKPESYGADSIRVLKGLDAVRKRPGMYIGDTDDGTGLHHMIFEVVDNSIDEA 60 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ I V +N D + TVSDNGRGIP D+HK EGISAAEVIMT+LHAGGKF+ +YKV Sbjct: 61 LAGHCSKIDVFINADNTVTVSDNGRGIPVDIHKSEGISAAEVIMTQLHAGGKFDHNTYKV 120 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS LKL I RE Y + F NG + PLV GS+ +TGT +TF Sbjct: 121 SGGLHGVGVSVVNALSKNLKLTISREKKKYFVEFENGAVVKPLVEIGSSE-ETGTTLTFS 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 PS++IF+ F L+ RL+EL++LN ++I+LID+R +P+ ++GGI+ FV L Sbjct: 180 PSTEIFTSTKFQISILEKRLKELAYLNKGLEINLIDQRKSKPQIFQFKFEGGIKEFVIDL 239 Query: 237 DRHKK--------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 +++K+ ++ PI G+++NI ++ ++ WN Y E V+CFTNNIPQKDGGTH Sbjct: 240 NKNKEKIKNDTGKQVLDDPIYFIGTKNNIEVECSLVWNATYSEQVMCFTNNIPQKDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 L G R+A+TR I YV + +KK+K ++ GDD REG VLS K+PDP+FSSQTKEKLV Sbjct: 300 LLGFRNAITRLINKYVTDNGLAKKEKVAISGDDVREGLICVLSAKVPDPKFSSQTKEKLV 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 SSEVR VVE+ ++ LS W ++H E KII+ K++ A++ R+ AR+AR+ RRK LDI Sbjct: 360 SSEVRPVVETIASEQLSMWFDQHQKETKIIIGKIIQAAVAREVARKARESVRRKSALDIT 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE------- 461 SLPGKLADC D + +ELF+VEGDSAGGSAKQ R+RE QA+LPLRGKILN Sbjct: 420 SLPGKLADCQTNDKEMAELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTYVQQKNDS 479 Query: 462 ---RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 + F KMLSS EI TLI ALGTG D F I LRY KI+IMTDADVDG+HIRTLLL Sbjct: 480 SEKKKVFAKMLSSNEIITLINALGTGF--DPFQIENLRYGKIVIMTDADVDGSHIRTLLL 537 Query: 519 TFFFRQ-MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 TFF + LI +G ++I +PPLY +T+G Y+K+EE+LED++I+ S + Sbjct: 538 TFFNNEPFNQLIRSGRIFIAQPPLYKMTKGSKSTYIKNEEALEDFIISNSAVLKSMKKNS 597 Query: 578 SK 579 + Sbjct: 598 EE 599 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 20/136 (14%) Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLG 743 + GSK I + E+++ S + K + + + ++QR+KGLG Sbjct: 565 TKGSKSTYIKNEEALEDFIISNSAVLKSMKKNSEEFKNSFE--MEKAK--YTLQRFKGLG 620 Query: 744 EMNASQLWETTLNPDTRSLLRVK---------ITDASQAD------DLFSRLMGDEVEPR 788 EMN +LW TTL+P +LL+V + + + ++F LMGD+V R Sbjct: 621 EMNPEELWNTTLDPKNNTLLKVNYSSSCDKLAMEGSEETSPSPEDIEIFDILMGDDVSKR 680 Query: 789 REFIQENSLPS-ALDI 803 + FI N++ LDI Sbjct: 681 KNFINTNAINVNNLDI 696 >gi|312130783|ref|YP_003998123.1| DNA gyrase subunit b [Leadbetterella byssophila DSM 17132] gi|311907329|gb|ADQ17770.1| DNA gyrase subunit B [Leadbetterella byssophila DSM 17132] Length = 649 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 295/630 (46%), Positives = 405/630 (64%), Gaps = 16/630 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N Y A +IQ+L+GL+AV+KRP+MYIGD G GLHH+I+EV+DN+IDE++ GY Sbjct: 1 MSEN-NKQDYSASNIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLIWEVVDNSIDEAMAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I T+N D S TV DNGRGIPT H++E SA EV++T LHAGGKF++ +YKVSGGL Sbjct: 59 CNRIETTINTDNSITVKDNGRGIPTGWHEKEQKSALEVVLTVLHAGGKFDKDTYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ L+ + R+G I E F G P G + GT + F P Sbjct: 119 HGVGVSCVNALSTHLRAEVHRDGKITEQEFSIGKPLYPAREIG-TTDYRGTIIHFKPDDS 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVSYL 236 IF V ++ Y+T+ +RLRELSFLN + ++L D +P+ +GG+ FV YL Sbjct: 178 IFQVTEYKYETVANRLRELSFLNKGITLTLTDLRELDEEGKPKYEEFHSEGGLIEFVEYL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D+ ++ L+ +P+ ++G RD + ++++M +N Y ENV F NNI +GGTH+SG R AL Sbjct: 238 DKSRERLITTPMYMEGQRDGVPVEVSMTYNTSYSENVSSFVNNINTPEGGTHVSGFRMAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + SY EKS K+K + GDD REG T+V+S+K+ +P+F QTK KL +SEV + V Sbjct: 298 TRTLKSYAEKSGLLAKEKIEISGDDFREGLTAVISVKVAEPQFEGQTKSKLGNSEVTAAV 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V + L +LEE+P +AKIIV KV+ A+ R AA++AR++ +RK VL + LPGKLAD Sbjct: 358 SGCVQEMLENYLEENPKDAKIIVDKVILAARARIAAKKAREMVQRKNVLVGSGLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CSE DP E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+A+ K+ ++EI Sbjct: 418 CSEHDPALCEVYLVEGDSAGGSAKQGRDRNFQAILPLRGKILNVEKAQEYKIYENEEIKN 477 Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG IG++ + KLRYHKIIIMTDAD+DG+HIRTL+LTFF+R M +I NG Sbjct: 478 IFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSHIRTLILTFFYRFMREIIENG 537 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +LYI +PPLY + +GK Y EE + + + E + + Sbjct: 538 YLYIAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGKEENVGVQRYKGLGEMNPEQL- 596 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + IE A + + Sbjct: 597 ----WETTMNPQHRTLKQVTIESAAEADML 622 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + E E++ + ++ + Sbjct: 458 ILNVEKAQEYKIYENEEIKNIFTALGVQIGKEGDERALNLEKLRYHKIIIMTDADIDGSH 517 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCSLLDTIFSIGRKG- 733 + F + + I + + L L+ G D+I + + G Sbjct: 518 IRTLILTFFYRFMREIIENGYLY-IAQPPLYLVKKGKDEIYAWTEEQRYAAVKKLAGGGK 576 Query: 734 ---ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 + +QRYKGLGEMN QLWETT+NP R+L +V I A++AD LFS LMGD+V PRR+ Sbjct: 577 EENVGVQRYKGLGEMNPEQLWETTMNPQHRTLKQVTIESAAEADMLFSMLMGDDVPPRRD 636 Query: 791 FIQENSLPSALD 802 FI++N+ + +D Sbjct: 637 FIEKNARYANVD 648 >gi|149369783|ref|ZP_01889634.1| DNA gyrase subunit B [unidentified eubacterium SCB49] gi|149356274|gb|EDM44830.1| DNA gyrase subunit B [unidentified eubacterium SCB49] Length = 655 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 285/601 (47%), Positives = 395/601 (65%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + +Y AD IQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L G+ Sbjct: 10 MSEENKKGNYGADQIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVIDNSIDEALAGH 68 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D + V +N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 69 CDTVDVWINEDNSITVRDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS LK + R G+IYE + G P+ GS D GTEVTF P + Sbjct: 129 HGVGVSCVNALSVHLKATVFRNGSIYEQEYERGKAMYPVKQVGSTE-DRGTEVTFKPDEE 187 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF +NYDTL RLREL+FLN + I+L DKR E + T G++ FV + Sbjct: 188 IFKQTREYNYDTLASRLRELAFLNKGITITLEDKREVEEDGSFKGETFHSTEGLKEFVRF 247 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++ L+ I ++G +++I +++AM +N Y+EN+ + NNI +GGTHLSG R Sbjct: 248 LDGNREMLIADVISMEGEKNDIPVEVAMVYNTSYNENLHSYVNNINTHEGGTHLSGFRRG 307 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 308 LTHTLKKYADASGMLDKLKFDISGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVTSA 367 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L +LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ LPGKL+ Sbjct: 368 VSQAVSEMLENYLEENPNDAKTIVQKVILAATARHAARKAREMVQRKTVMSGGGLPGKLS 427 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP++ E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 428 DCSEQDPERCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIR 487 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M L+ + Sbjct: 488 NIFTALGVTIGTEEDSKALNLSKLRYHKVVIMCDADVDGSHISTLILTFFFRYMRELVES 547 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI PPLY + +G +Y + + S I+ + + + + Sbjct: 548 GYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFGGSASIQRYKGLGEMNASQLWDTTM 607 Query: 592 D 592 + Sbjct: 608 N 608 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739 I +F +Y R L L+ G K + + D + S+QRY Sbjct: 532 LILTFFFRYMRELVESGYVYIATPPLYLVKKGAKKEYAWSDAERDALNEKFGGSASIQRY 591 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNASQLW+TT+NPD R+L +V I + ++AD +FS LMGDEV PRREFI++N++ + Sbjct: 592 KGLGEMNASQLWDTTMNPDFRTLRQVAIDNGTEADRIFSMLMGDEVPPRREFIEKNAVYA 651 Query: 800 ALD 802 +D Sbjct: 652 NID 654 >gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843] gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843] Length = 640 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 289/586 (49%), Positives = 401/586 (68%), Gaps = 4/586 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + DGS +V+D+GRGIPTD+H G SA E ++T LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS+W+ + + R+ ++ + GI LV + S TGT V FLP ++IFS Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL++LN+ V+I+ D R EP T Y+GGI+ +V+Y+ R K+ L + Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRPEEPHIETYCYEGGIKEYVAYMCREKETLHK 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + G ++ I+I++A +W D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ G++ REG T+V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +LE++P A I++K + A +AARRARDL RRK VL+ + LPGKLADCSERDP++ Sbjct: 361 NEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPER 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LITALG G Sbjct: 421 SEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I + FD ++LRYH+I++MTDADVDGAHIRTLLLTFF+R +LI G++YI PPLY + Sbjct: 481 IKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKL 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 RGK+ Y + L+ + + G + L + Sbjct: 541 ERGKNHSYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWD 586 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729 V + F + + I + + L + L I Sbjct: 504 VDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRELQQKIAEFP 563 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 ++QR+KGLGEM QLW+TT+NP+TR+L RV+I DA++A++LF+ LMGD V PRR Sbjct: 564 SNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTILMGDRVAPRR 623 Query: 790 EFIQENSLPSA---LDI 803 EFI+ + LDI Sbjct: 624 EFIETHGSRLNLTDLDI 640 >gi|146300010|ref|YP_001194601.1| DNA gyrase, B subunit [Flavobacterium johnsoniae UW101] gi|146154428|gb|ABQ05282.1| DNA gyrase subunit B [Flavobacterium johnsoniae UW101] Length = 646 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 284/598 (47%), Positives = 387/598 (64%), Gaps = 12/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ I+ ++Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEEIKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N DGS TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTIGVTINEDGSVTVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +K + REG IYE + G P+ G + GT TF P Sbjct: 120 HGVGVSVVNALSVHMKSTVFREGKIYEQEYERGKSLYPVKQIGET-DKRGTRQTFFPDDT 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF F+YDTL R+RELSFLN + I+ DKR E + G++ ++ Y Sbjct: 179 IFQQTTEFSYDTLSARMRELSFLNKGITITFTDKREVDDKGEFKSEVFHSDEGLKEYIRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++P++ I + + I +++A+ +N Y EN+ + NNI +GGTHL G RS Sbjct: 239 LDGNREPIISHVISMDHEKGEIPVEVALIYNTSYSENIFSYVNNINTHEGGTHLQGFRSG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTRTLKKYADASGLLDKLKFEISGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVVSP 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V + L +LEE+P +AKII++KV+ A+ R AA++AR++ +RK V+ LPGKL+ Sbjct: 359 VSQAVGEMLENYLEENPNDAKIIIQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP + E++LVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSEQDPARCEVYLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMHHKVFENEEIR 478 Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG +G +I KLRYHK+IIM DADVDG+HI TL+LTFFFR M LI Sbjct: 479 NIFTALGVTVGTAEDSKALNIEKLRYHKVIIMCDADVDGSHISTLILTFFFRFMKELIEE 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI PPLY + +G +Y ++ + + G ++ L Sbjct: 539 GHVYIAAPPLYLVKKGNKKEYAWNDVQRDQ-ANERMGGSANIQRYKGLGEMNAEQLWE 595 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 25/208 (12%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + + A EK + + I+ Sbjct: 454 LPLRGKILNVEKAMHHKVFENEEIRNIFTALGVTVGTAEDSKALNIEKLRYHKV----II 509 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEEN----YLTILSLICNGDKIKITGP 719 + L + F R IEE L L+ G+K + Sbjct: 510 MCDADVDGSHISTLILTFFF-------RFMKELIEEGHVYIAAPPLYLVKKGNKKEY--- 559 Query: 720 CSLLDTI-FSIG--RKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + + R G ++QRYKGLGEMNA QLWETT++P R+L +V I ++AD Sbjct: 560 --AWNDVQRDQANERMGGSANIQRYKGLGEMNAEQLWETTMDPQFRTLRQVTIDSLAEAD 617 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802 +FS LMGDEV PRREFI++N++ + +D Sbjct: 618 RVFSMLMGDEVPPRREFIEKNAVYANID 645 >gi|282855958|ref|ZP_06265249.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455] gi|282586177|gb|EFB91454.1| DNA gyrase, B subunit [Pyramidobacter piscolens W5455] Length = 632 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 283/599 (47%), Positives = 388/599 (64%), Gaps = 9/599 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y A+ IQIL+GLD V+KRP MYIGDT GLHH +YEV+DN++DE+L G+ ITV Sbjct: 2 STQYTAEDIQILEGLDPVRKRPGMYIGDT-TTRGLHHCVYEVVDNSVDEALGGFCSEITV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL+ D S +VSDNGRGIP D H G A EV++T LHAGGKF+ +YK+SGGLHGVGVS Sbjct: 61 TLHADQSVSVSDNGRGIPVDPHPSNGRPALEVVLTVLHAGGKFDNHNYKISGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ + R+G + F G + L G+ GT VTF P ++IF Sbjct: 121 VVNALSEWLEVTVYRDGREWHERFERGTPVSGLT-GGTPTAKRGTTVTFRPDAEIFDEVA 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ +TL +R RE++FL ++ +D+ + +GG+ FV+Y+++ K+ L Sbjct: 180 FSAETLGNRFREMAFLIPGLKFIFVDEAEGKTWTYHY--EGGVSEFVAYINKGKQTLTPR 237 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI I+G +D ++++ ++ D Y E + F N I +GGTH++GLRSALTR I + Sbjct: 238 PIVIRGEKDGVAVEAGFQYTDEYIERLYSFANLINTIEGGTHVAGLRSALTRGINEGARR 297 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K+ ++ GDD REG T VLS+K+ +P+F QTK KL + V+ +V+S + DG+ Sbjct: 298 AGVLKEKDENLSGDDLREGLTCVLSVKLGNPQFEGQTKTKLGNGNVKGIVDSLLYDGILQ 357 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 LEE P K I++K + A R+AA++AR+L RK L SLPGKLADCS R + E Sbjct: 358 ALEEDPSVIKPIIEKAIKARQAREAAKKARELV-RKSALSGLSLPGKLADCSSRTAENCE 416 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR DKML S+EI +I ALG GIG Sbjct: 417 VYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARMDKMLGSKEIRVIIQALGCGIG 476 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI KLRY+KIIIMTDADVDGAHI TLLLTFFFR M LI G +Y PPLY + Sbjct: 477 ED-FDIGKLRYNKIIIMTDADVDGAHISTLLLTFFFRHMRELIEKGHVYQAVPPLYRVQV 535 Query: 547 GKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 GK + Y+ ++ L ++ + ++ + + +D A ++ K I+ Sbjct: 536 GKKVDYLYSDKELRKFMDGLAADGKKAAVQRYKGLGEMNPGQLWETTMDPATRLLKQIE 594 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 7/135 (5%) Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIFSI 729 L + F + + + + + + L +D + + Sbjct: 501 HISTLLLTFFFRHMRELIEK--GHVYQAVPPLYRVQVGKKVDYLYSDKELRKFMDGLAAD 558 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 G+K ++QRYKGLGEMN QLWETT++P TR L ++++ D + AD+ F LMGD VEPRR Sbjct: 559 GKK-AAVQRYKGLGEMNPGQLWETTMDPATRLLKQIELDDLAGADEYFDILMGDRVEPRR 617 Query: 790 EFIQENSLPS-ALDI 803 +FI++++ LD+ Sbjct: 618 QFIEQHAHEVHNLDV 632 >gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476] gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476] Length = 648 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 290/601 (48%), Positives = 395/601 (65%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Q+S YDA IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DNA+DE+L GY Sbjct: 1 MAEK-QSSHYDAGDIQVLEGLEAVRKRPGMYIGST-GTRGLHHLVYEVVDNAVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNGRGIP + H +E I EV++T LHAGGKF + YKVSGGL Sbjct: 59 CTKIDVIIHEDNSITVIDNGRGIPVEKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ L++ + R+G Y ++F G L G++ T VTF P + Sbjct: 119 HGVGVSCVNALSTRLEVEVCRDGKKYGIAFSRGKTVEKLHQIGTSKTTG-TTVTFWPDPE 177 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF+ ++Y+TLQ R RE++FLN ++I L D+R + + T Y GGI FV Y Sbjct: 178 IFTDTLVYDYETLQERFREMAFLNKGLRIELTDERQQDEEGNFKHETFKYDGGIVDFVKY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTHLSGLRS 294 L++ K+ L PI + + ++++ M+W+ Y N ++ F NNI +GGTHL G ++ Sbjct: 238 LNQGKETLN-KPIYFEAENADGTVEVVMQWSTSYGTNGIMAFANNINTHEGGTHLDGFKN 296 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y K+ +++ GDD REG +++S+K+ DP+F QTK KL + E+R Sbjct: 297 ALTRTINDYARSKGLLKEKDKNLTGDDAREGLAAIISVKLHDPQFEGQTKTKLGNVEIRG 356 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +V+ V GLS +LEE+P AK IV K A R+AAR+AR++TRRKGVLD S+PGKL Sbjct: 357 LVQGAVTKGLSEYLEENPTPAKRIVGKASQALKAREAARKAREMTRRKGVLDSFSMPGKL 416 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS R+P SE+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA + LSS I Sbjct: 417 ADCSSREPALSEMFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVERAGLHRALSSDTI 476 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +LITA+GT IG D ++ + RYH+IIIMTDADVDGAHIR LLLTFF+R MP LI+ G++ Sbjct: 477 SSLITAIGTNIG-DDYNGDNARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPDLINRGYI 535 Query: 535 YIIKPPLYGITRGKSL-----QYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLR 588 YI +PPLYG+ + S +Y+ ++E+ + + ++ G + L Sbjct: 536 YIAQPPLYGLKKKNSASGKILKYIYNDEAKDQIMAQLEDPDKYDIQRYKGLGEMDPEQLW 595 Query: 589 N 589 Sbjct: 596 E 596 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+ P+TR+L++V I DA+ A+ S LMGD+VEPR+EFIQ+N Sbjct: 580 IQRYKGLGEMDPEQLWETTMEPETRTLIQVSIEDAAAAERAVSDLMGDDVEPRKEFIQKN 639 Query: 796 SLPSA-LDI 803 +L LDI Sbjct: 640 ALDVRFLDI 648 >gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 640 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 290/586 (49%), Positives = 402/586 (68%), Gaps = 4/586 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + DGS +V+D+GRGIPTD+H G SA E ++T LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DIKADGSVSVTDDGRGIPTDVHPTTGKSALETVLTILHAGGKFGSGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS+W+ + + R+ ++ + GI LV + S TGT V FLP ++IFS Sbjct: 121 VVNALSAWVDVTVWRDHKVHTQRYERGIPVTELVSSPSQEEKTGTRVNFLPDTEIFSQGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL++LN+ V+I+ D R+ EP T Y+GGI+ +V+Y+ R K+ L + Sbjct: 181 EFDYSTLSGRLRELAYLNAGVKITFSDYRAEEPHIETYCYEGGIKEYVAYMCREKETLHK 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + G ++ I+I++A +W D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 DIIYVSGEKNGINIEVAFQWCIDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ G++ REG T+V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKIKENEPNLAGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGETL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +LE++P A I++K + A +AARRARDL RRK VL+ + LPGKLADCSERDP+K Sbjct: 361 NEYLEQNPQVADTIIEKAVQAYKAAEAARRARDLVRRKSVLESSPLPGKLADCSERDPEK 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LITALG G Sbjct: 421 SEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I + FD ++LRYH+I++MTDADVDGAHIRTLLLTFF+R +LI G++YI PPLY + Sbjct: 481 IKGEDFDPSQLRYHRIVLMTDADVDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKL 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 RGK+ Y + L+ + + G + L + Sbjct: 541 ERGKNHSYCYSDRELQQKIAEFPSNANYTIQRFKGLGEMMPQQLWD 586 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729 V + F + + I + + L + L I Sbjct: 504 VDGAHIRTLLLTFFYRYQKNLIDQGYVYIACPPLYKLERGKNHSYCYSDRELQQKIAEFP 563 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 ++QR+KGLGEM QLW+TT+NP+TR+L RV+I DA++A++LF+ LMGD V PRR Sbjct: 564 SNANYTIQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAKAEELFTILMGDRVAPRR 623 Query: 790 EFIQENSLPSA---LDI 803 EFI+ + LDI Sbjct: 624 EFIETHGPRLNLTDLDI 640 >gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017] gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017] Length = 646 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 292/591 (49%), Positives = 403/591 (68%), Gaps = 10/591 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G+ I + Sbjct: 3 TNYSADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGHCKHIHIY 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGS V+D+GRGIPTD H G SA E +MT LHAGGKF+ SYKVSGGLHGVG+SV Sbjct: 62 LNEDGSVRVTDDGRGIPTDKHPTTGKSALETVMTVLHAGGKFDGDSYKVSGGLHGVGISV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQD 186 VNALS W++ ++ R G ++ F GI + LVV + ++GT +TFLP IF+ + Sbjct: 122 VNALSEWVEAKVWRNGKVHTQRFERGIPKSELVVEPTDRKESGTAITFLPDDTIFTVTTE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241 F+Y TL RLREL++LN+ V+IS D R + EP+ T Y GGI+ +V Y++R K+ Sbjct: 182 FDYKTLASRLRELAYLNAGVEISFHDNRLELLEADEPKVETYRYDGGIKEYVDYMNRDKE 241 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + I ++G R+N+ +++A++W D Y +N+L F NNI DGGTHL GL++ LTR + Sbjct: 242 PIHEECIYVEGERNNVQVEVALQWCRDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 S K K ++ G+ REG T+V+S+K+P+P F QTK KL ++EVR +V+S V Sbjct: 302 NSLARKRSKLKDGDSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLV 361 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +L+ HP A +++K L A +AARRAR+L RRK VL+ ++LPGKLADCS R Sbjct: 362 GEVLTEYLDFHPNVADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LITA Sbjct: 422 DPSTSEIYIVEGDSAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITA 481 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GI + FD+++LRYH+II+MTDADVDGAHIRTLLLTFF+R LI G++YI PP Sbjct: 482 LGLGIKGEEFDVSQLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPP 541 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 LY I RG+S Y + L++ + ++ + G + L + Sbjct: 542 LYKIERGRSHYYCYSDRELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWD 592 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 33/332 (9%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562 D+++ G HIR L ++P G + + GI + + + Sbjct: 315 DSNLGGEHIREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLDFHPN 374 Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPNHDKT---FIEQAV 617 + + + + ++ F ++ +L R + ++ + + D T +I + Sbjct: 375 VADSVIEKALQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSTSEIYIVEGD 434 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663 +G + ++ LN K + + D+ Sbjct: 435 SAGGSAKQGRDRGFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLGIKGEEFDVS 494 Query: 664 VKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 R R V + F + + + I I + + Sbjct: 495 QLRYHRIILMTDADVDGAHIRTLLLTFFYRYQRELIDQGYIYIACPPLYKIERGRSHYYC 554 Query: 717 TGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L + + ++QR+KGLGEM +QLW+TT+NP+TR+L ++ I DA++AD Sbjct: 555 YSDRELQNLVQHEFPANANYTIQRFKGLGEMMPTQLWDTTMNPETRTLKQIDIEDAAEAD 614 Query: 775 DLFSRLMGDEVEPRREFIQENS--LP-SALDI 803 +F+ LMGD V PRREFI+ + L + LDI Sbjct: 615 RIFTILMGDRVAPRREFIETHGPRLNLAELDI 646 >gi|298675298|ref|YP_003727048.1| DNA gyrase subunit B [Methanohalobium evestigatum Z-7303] gi|298288286|gb|ADI74252.1| DNA gyrase, B subunit [Methanohalobium evestigatum Z-7303] Length = 634 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 301/589 (51%), Positives = 402/589 (68%), Gaps = 7/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D YD+ +IQ+L+GL+AV+KRPSMYIG D GLHH++YEV+DN+IDE+L GY Sbjct: 1 MADK---QVYDSTNIQVLEGLEAVRKRPSMYIGSVDS-RGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I LN DGS T+ D+GRGIP D H + SA EV+MT LHAGGKF++ SYKVSGGL Sbjct: 57 CSEINTILNSDGSVTLEDDGRGIPVDTHAKYNKSALEVVMTLLHAGGKFDKNSYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVN LS WL + +KR+ Y + G + V G + GT+ TF P S+ Sbjct: 117 HGVGVSVVNGLSEWLDVEVKRDDKRYYQHYEKGYPKTEVQVLGESE-GNGTKFTFKPDSE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F+YD+L RLREL+FLN ++I++ D+RS E +E Y GGI +FV +L++++ Sbjct: 176 IFESTEFDYDSLSTRLRELAFLNKGIKITIKDERSEEGQEDVFQYDGGIVSFVKHLNKNR 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ + PI +G D +++++++ D Y E V F NNI +GGTH+ G ++ALTR Sbjct: 236 SPIHEEPIYFEGESDGTIVEISLQYTDSYGEYVYSFANNINTHEGGTHVIGFKTALTRVA 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y+ K+ +K + G+D REG T+++S K+PDP+F QTK +L +S+V+ VVES V Sbjct: 296 NDYIRKN-EIEKGNVRLTGEDIREGLTAIISAKIPDPQFEGQTKTRLGNSDVKGVVESLV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS +LEE+P A I+KK L A R+AA+RAR+LTRRK L++++LPGKLADCSE Sbjct: 355 TEELSRYLEENPKIANSIIKKALSAKRAREAAKRARELTRRKSALEVSTLPGKLADCSET 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE+FLVEGDSAGGSAK GR R QAILP RGKI+NVE+AR K+L + EI +LITA Sbjct: 415 DPSVSEIFLVEGDSAGGSAKMGRDRRFQAILPFRGKIINVEKARLSKVLKNNEILSLITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG+D FDINK RYHK+IIMTDADVDGAHIRTL+LTFFFR M ++ NG++YI +PP Sbjct: 475 MGTGIGED-FDINKARYHKVIIMTDADVDGAHIRTLILTFFFRYMNEMVDNGYVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I +GK Y+ E+ L G ++ L Sbjct: 534 LYRIKKGKKEFYIHTEKEKNAKLKELGEKGVSIQRYKGLGEMNPEQLWA 582 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 44/102 (43%), Positives = 66/102 (64%), Gaps = 1/102 (0%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + + + I + +G KG+S+QRYKGLGEMN QLW TT+NP++R L Sbjct: 533 PLYRIKKGKKEFYIHTEKEKNAKLKELGEKGVSIQRYKGLGEMNPEQLWATTMNPESRKL 592 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 +V + DA+ AD++FS LMG+EVEPRR+FI++++ LD+ Sbjct: 593 TQVTMEDAAAADEMFSILMGEEVEPRRQFIEKHATEVVNLDV 634 >gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix rhusiopathiae ATCC 19414] Length = 639 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 290/639 (45%), Positives = 403/639 (63%), Gaps = 6/639 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + SY + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN IDE+L G+ Sbjct: 1 MSNTKVDHSYTSSDIQVLEGLEAVRKRPGMYIG-TTASRGLHHLVWEIVDNGIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V ++ D +VSDNGRGIP +H + G+S AE I T LHAGGKF +YKVSGGL Sbjct: 60 ATEIIVNVDKDNVISVSDNGRGIPVGIHAKTGVSTAETIFTVLHAGGKFGGGAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL+++I +G Y + F G PL G + GT V F Sbjct: 120 HGVGASVVNALSEWLEVKIYLDGIEYYLRFEEGGKVAVPLKEVGKT-DKKGTTVRFKADP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSYLD 237 IF+ F++D L+ RLR+++FLN +++ D+R PE Y+ G+ +V Y++ Sbjct: 179 TIFTETTEFSHDVLRDRLRQIAFLNKGIKLVFQDEREPEETRHLEFVYEDGLREYVQYMN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 +K P+ + + +G + I ++++M++NDG+ N+ F NNI +GGTH G + ALT Sbjct: 239 ANKSPIHEEIVYCEGEEEGILVEVSMQYNDGFTPNIYSFCNNINTHEGGTHEDGFKLALT 298 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I +Y ++ KKD +GDD REG T+++S+K PDP++ QTK KL +SEVR +V Sbjct: 299 RVINNYAKEHNLLKKDDDGFLGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVS 358 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S + L +L EHP +AKIIV K AS R AAR+AR+LTRRKG L+++SLPGKLADC Sbjct: 359 SVFGEQLERFLMEHPDDAKIIVDKAAIASKARVAARKARELTRRKGALEVSSLPGKLADC 418 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S R+P + E+++VEGDSAGGSAKQGR + QAILPLRGK++NVE+AR K+ + EI + Sbjct: 419 SNRNPSECEIYIVEGDSAGGSAKQGRDSKFQAILPLRGKVINVEKARLHKIFDNNEIRMM 478 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA GTG+ D DI+KLRYHKIIIMTDADVDGAHIRTLLLTFF+R + LI NGF+YI Sbjct: 479 ITAFGTGV-SDEMDIDKLRYHKIIIMTDADVDGAHIRTLLLTFFYRFLRPLIENGFVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I+RG + Y +EE L++ + ++ + + + +D + Sbjct: 538 QPPLYKISRGNKIAYAYEEEELDELKVEFGDRFNVQRYKGLGEMNPEQLWDTTMDPETRT 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + E + V + N A Sbjct: 598 LIQVTIDDAMEADVIFETLMGDEVAPRREFIQANAEYAD 636 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 14/201 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + +F+ + + + + +++ ++ + K + + D Sbjct: 452 LPLRGKVINVEKARLHKIFDNNEIRMMITAFGTGVSDEMDIDKLRYHKIIIMTDADVDGA 511 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSL 722 R + +F ++ R + N L I G+KI Sbjct: 512 HIRT-------------LLLTFFYRFLRPLIENGFVYIAQPPLYKISRGNKIAYAYEEEE 558 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 LD + ++QRYKGLGEMN QLW+TT++P+TR+L++V I DA +AD +F LMG Sbjct: 559 LDELKVEFGDRFNVQRYKGLGEMNPEQLWDTTMDPETRTLIQVTIDDAMEADVIFETLMG 618 Query: 783 DEVEPRREFIQENSLPSALDI 803 DEV PRREFIQ N+ + LDI Sbjct: 619 DEVAPRREFIQANAEYADLDI 639 >gi|160946608|ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270] gi|158446992|gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270] Length = 638 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 293/590 (49%), Positives = 395/590 (66%), Gaps = 7/590 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +Y A I++L GL+ V+ RP MYIG T G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSKE-KIRNYGAKDIRVLTGLEPVRLRPGMYIGST-GVKGLHHLVYEVVDNSIDEALAGV 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT+ D S V DNG GIP ++H + G S E ++T LHAGGKFN +Y+VSGGL Sbjct: 59 CDTITVTIFEDNSVRVEDNGSGIPVEVHPQTGKSTLETVLTILHAGGKFNNNAYQVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL +KR+G +YE F G + L V G +TGT +TF P S+ Sbjct: 119 HGVGVSVVNALSEWLIANVKRDGKLYEQQFSRGNTTSKLEVVG-TSKETGTIITFKPDSE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF + + L++R RE++FLN V+I D+R E T Y+GGI++FV Y++R+K Sbjct: 178 IFDTTIYEKEILRNRFREMAFLNKGVKIIFTDER--EDFTETFHYEGGIKSFVEYMNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L I QG R + ++++M++ DGY ENVL F NNI +GG+HL G R+ALTR + Sbjct: 236 NNLHNEVIYFQGQRGDSQVEISMQYTDGYSENVLTFANNIHTPEGGSHLVGFRTALTRTL 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K ++ GDD REG T ++SIK+P+P+F QTK KL +SE R +VE+F+ Sbjct: 296 NDYGRKYNLIKDKDANLQGDDTREGLTGIVSIKLPNPQFEGQTKAKLGNSESRGIVETFL 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L +LEE+P KII++K ++ R+AAR+ARDLTR+K +LD +LPGKL+DC E Sbjct: 356 YDNLMTFLEENPKVGKIIIEKAQSSARAREAARKARDLTRKKSILDNTTLPGKLSDCQES 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D +E++LVEGDSAGGSAKQGR + QA+LPL+GKI+NVE+AR DK+L +EI ++ITA Sbjct: 416 DISVNEIYLVEGDSAGGSAKQGRDSKFQAVLPLKGKIMNVEKARIDKILGYEEIKSMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG+D F+++ LRY KI+IMTDADVDGAHIRTL+LTFF+R M LI G +YI +PP Sbjct: 476 FGTGIGKD-FNLDNLRYGKIVIMTDADVDGAHIRTLILTFFYRYMKELIEQGHVYIAQPP 534 Query: 541 LYGITRGKS-LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LYGI +G ++Y +E L+ L G ++ L Sbjct: 535 LYGIIKGVKVVKYCWTDEELQASLDELGRDSHRIQRYKGLGEMNPAQLWE 584 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + K ++ +V V + Sbjct: 452 IMNVEKARIDKILGYEEIKSMITAFGTGIGKDFNLDNLRYGKIVIMTDADVDGAHIRTLI 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRY 739 F + + I + + +I +K L ++ +GR +QRY Sbjct: 512 LTFFYRYMKELIEQGHVYIAQPPLYGIIKGVKVVKYCWTDEELQASLDELGRDSHRIQRY 571 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDA--SQADDLFSRLMGDEVEPRREFIQENSL 797 KGLGEMN +QLWETT+NP+ R L+V I D D+ FS LMGD+VEPRREFI++N+ Sbjct: 572 KGLGEMNPAQLWETTMNPENRLFLQVNIDDEELVSIDETFSTLMGDKVEPRREFIEQNAK 631 Query: 798 PS-ALD 802 +D Sbjct: 632 YVENID 637 >gi|88803546|ref|ZP_01119071.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P] gi|88780558|gb|EAR11738.1| DNA gyrase, B subunit [Polaribacter irgensii 23-P] Length = 646 Score = 612 bits (1577), Expect = e-172, Method: Composition-based stats. Identities = 282/622 (45%), Positives = 402/622 (64%), Gaps = 12/622 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + SYDA SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSEEKKTYSYDASSIQALEGMEHVRMRPSMYIGDV-GPRGLHHLVYEVVDNSIDEAMGGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S T DNGRGIP +H++EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTIDVTINEDNSVTTRDNGRGIPVGIHEKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L I +EG +++ + G P+ G + + TGT VTFLP Sbjct: 120 HGVGVSCVNALSDLLTATIHKEGKVWQQEYSKGKALYPVKTIGES-DFTGTIVTFLPDKS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF FNYDTL R+RELS+LN + I+L DKR + G+ F+ Y Sbjct: 179 IFKQTTEFNYDTLATRMRELSYLNKGITITLTDKRSTDDEGNFISEVFYSDEGLPEFIKY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ L I ++G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 239 LDSTREQLTSKIISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y ++S K K + GDD REG T+++S+K+ +P+F QTK KL + EV + Sbjct: 299 LTGTLKKYADESGLLKNVKFEIAGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVSAA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEE+P +AKIIV+KV+ A+ R AAR+AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQSVSEMLTNYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP + E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +++K+RYHK++IM DADVDG+HI TL+LTFFFR M ++ Sbjct: 479 NMFTALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMVEQ 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI PPLY + +G+ +Y D++ + + I+ + + + + Sbjct: 539 GYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMGGTVNIQRYKGLGEMNADQLWDTTM 598 Query: 592 D-DALKIDKLIKDFYPNHDKTF 612 + + + +++ D D+ F Sbjct: 599 NPEFRTLRQVVIDSPTEADRVF 620 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 1/126 (0%) Query: 679 GSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737 + I +F +Y R + L L+ G K + D I +++Q Sbjct: 521 ATLILTFFFRYMREMVEQGYIYIATPPLYLVKKGQKREYAWDDDQRDFIAQQMGGTVNIQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMNA QLW+TT+NP+ R+L +V I ++AD +FS LMGDEV PRREFI++N+ Sbjct: 581 RYKGLGEMNADQLWDTTMNPEFRTLRQVVIDSPTEADRVFSMLMGDEVPPRREFIEKNAK 640 Query: 798 PSALDI 803 + +D+ Sbjct: 641 YAKIDV 646 >gi|6006289|dbj|BAA84773.1| DNA gyrase B subunit [Bacteroides fragilis] Length = 653 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 292/604 (48%), Positives = 397/604 (65%), Gaps = 17/604 (2%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ N SY ADSIQ+L+GL+AV+KRP+MYIGD GLHH++YE++DN+IDE+L Sbjct: 1 MSEEQNPTNNGSYSADSIQVLEGLEAVRKRPAMYIGDIS-VKGLHHLVYEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+N D S TV DNGRGIP D H++E SA EV MT LHAGGKF++ SYKVS Sbjct: 60 AGYCDHIEVTINEDNSITVQDNGRGIPVDFHEKEQKSALEVAMTVLHAGGKFDKGSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+S VNALS+ + ++ R G IY+ + G P+ G A + TGT+ F P Sbjct: 120 GGLHGVGMSCVNALSTHMTTQVFRNGKIYQQEYEIGKPLYPVKEVGIADH-TGTKQQFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFV 233 IF+ ++Y L RLREL++LN+ ++ISL D+R + T + + G+ FV Sbjct: 179 DDSIFTETIYDYKILASRLRELAYLNAGLRISLTDRRVVNEDGSFKHETFYSEEGLREFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +++ ++ L+ I + + NI I++A+ +N G+ EN+ + NNI +GGTHL+G R Sbjct: 239 RFIESSREHLINDVIYLNTEKQNIPIEVAIMYNTGFSENIHSYVNNINTIEGGTHLAGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR + Y E S +K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVN 358 Query: 354 SVVE-SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ + L+ +LEEHP EAK IV KV+ A+ R AAR+AR++ +RK + LPG Sbjct: 359 GVLPIRRYGEVLNYYLEEHPKEAKAIVDKVILAATARHAARKAREMVQRKSPMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS++DP+K ELFLVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A + K L S+ Sbjct: 419 KLADCSDKDPQKCELFLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMYHKALESE 478 Query: 473 EIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG IG + +I+KLRYHKIIIMTDADVDG+HI TL++TFFFR MP + Sbjct: 479 EIRNIYTALGVTIGTEEDSKAANIDKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQI 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKN 585 I NG+LYI PPLY +GK +Y + + ++ E + G ++ Sbjct: 539 IQNGYLYIATPPLYLCKKGKIEEYCWTDAQRQKFIDTYGGGSENAIHTQRYKGLGEMNAQ 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 90/204 (44%), Gaps = 13/204 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ E + I +L + + A +K + I Sbjct: 457 LPLRGKILNVEKAMYHKALESEEIRNIYTALGVTIGTEEDSKAANIDKLRYHKI------ 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722 + V + F F + I + + L L G KI+ Sbjct: 511 IIMTDADVDGSHIDTLIMTFFFRYMPQIIQNGYLY-IATPPLYLCKKG-KIEEYCWTDAQ 568 Query: 723 ----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 +DT I QRYKGLGEMNA QLWETT++P+ R L +V I +A++AD +FS Sbjct: 569 RQKFIDTYGGGSENAIHTQRYKGLGEMNAQQLWETTMDPENRMLKQVNIDNAAEADYIFS 628 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMG++V PRREFI+EN+ + +D Sbjct: 629 MLMGEDVGPRREFIEENATYANID 652 >gi|226226219|ref|YP_002760325.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27] gi|226089410|dbj|BAH37855.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27] Length = 658 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 305/581 (52%), Positives = 401/581 (69%), Gaps = 17/581 (2%) Query: 1 MSDNIQ------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M+++ + Y A SI +LKGL+AV+KRP MYIG T GLHH++YEV+DN+ID Sbjct: 1 MANSNAPEAQEDENEYGAHSITVLKGLEAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+A + VT++ D S +V D+GRGIP D+H E + E+ MT LHAGGKF++ +Y Sbjct: 60 EALAGFAKRVEVTIHADDSISVEDDGRGIPVDVHPIEKLPGVELAMTVLHAGGKFDKNTY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEV 173 KVSGGLHGVGVSVVNALS LK+ IKR+G + M F G+ L + +TGT+V Sbjct: 120 KVSGGLHGVGVSVVNALSDVLKVWIKRDGKEHFMDFARGVTTTKLKTLRNVPAKETGTKV 179 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-----ITMFYKG 227 F P + IF + + TL +RLREL+FLN +QI+L D+R E ++ F +G Sbjct: 180 WFKPDATIFQETTRYEWATLANRLRELAFLNKGIQITLRDERPDEMKDGQPREEVFFARG 239 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 G+ FV +L +KKPL Q + + RD+I I++A+++ND Y +NV F NNI +GGT Sbjct: 240 GLREFVVFLTGNKKPLHQDVVYLDTERDDIGIEMALQYNDSYADNVFSFVNNINTHEGGT 299 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSV--IGDDCREGFTSVLSIKMPDPRFSSQTKE 345 HL+G +SALT I Y+E+S K + + GDD REG T+VLS+K+ +P+F QTK Sbjct: 300 HLTGFKSALTSVINKYIERSSNLNKKDKEIRLSGDDVREGLTAVLSVKVREPQFEGQTKT 359 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL +SE V S +N+ LS +LEEHP A I+ K + AS R+AAR+ARDLTR+K L Sbjct: 360 KLGNSEAEGAVRSVMNELLSQYLEEHPKTANAIIDKAISASRAREAARKARDLTRKKNAL 419 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 D+A+LPGKLADCS DP EL+LVEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ARF Sbjct: 420 DVAALPGKLADCSLSDPALCELYLVEGDSAGGSAKQGRNRNFQAILPLRGKIINVEKARF 479 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DK+LS++EI T+ITA+GTGI +D FD+ K RY KIIIMTDADVDGAHIRTLLLTFFFRQM Sbjct: 480 DKVLSNEEIRTIITAIGTGI-KDEFDLGKTRYQKIIIMTDADVDGAHIRTLLLTFFFRQM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 LI G++YI +PPLY + +GK Y E+ + + Sbjct: 539 RELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKERDSFSERL 579 Score = 170 bits (431), Expect = 9e-40, Method: Composition-based stats. Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 10/202 (4%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A V + E + I ++ + + + + + +K + + D Sbjct: 465 LPLRGKIINVEKARFDKVLSNEEIRTIITAIGTGIKDEFDLGKTRYQKIIIMTDADVDGA 524 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSN-RIEENYLTILSLICNGDKIKITGPCSL 722 R + F + + G Y R+ + + Sbjct: 525 HIRTL--LLTFFFRQMRELIDAGYMYIAQPPLYRVAKGKEEFYAYSEKER----DSFSER 578 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L GR I +QRYKGLGEMN +QLW+TT++P+TR++LRV + DA AD F LMG Sbjct: 579 LGG--PEGRGNIMVQRYKGLGEMNPAQLWKTTMDPETRTMLRVTMEDAVLADQTFQTLMG 636 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRR+FI+ N+ LD+ Sbjct: 637 DDVEPRRQFIESNARFVSNLDV 658 >gi|254424108|ref|ZP_05037826.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335] gi|196191597|gb|EDX86561.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7335] Length = 645 Score = 611 bits (1576), Expect = e-172, Method: Composition-based stats. Identities = 288/646 (44%), Positives = 403/646 (62%), Gaps = 17/646 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G+ IT Sbjct: 3 NNYGAQQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGHCTHITAA 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS-YKVSGGLHGVGVS 126 LN DGS TV+D+GRGIPTD+H G SA E ++T LHAGGKF S YKVSGGLHGVGVS Sbjct: 62 LNADGSVTVTDDGRGIPTDIHPTTGKSALETVLTVLHAGGKFGGDSGYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ- 185 VVNALS W+++ + REG ++ F G L T TGT+VTF P + IF+ Sbjct: 122 VVNALSEWVEVTVWREGKVHTQRFEQGNPIGKLK-TSKGSTKTGTQVTFKPDATIFTHTV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+YDT+ RLREL++LN+ V I+ D R + +P+ FY+GGI +V Y++ K Sbjct: 181 EFDYDTIARRLRELAYLNAGVDITFTDYRLDLIKADKPQVSHYFYEGGIREYVEYINNEK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL I + ++ + ++ A++W D + +N++ F NNI DGGTHL GL++ LTR Sbjct: 241 EPLHPDVIYVNSDKNGVQVEAALQWCGDAFSDNLMGFANNIRTVDGGTHLEGLKTVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + K K + ++ G++ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 MNVIARKRKKRKDTESNMAGENIREGLTAVVSVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +L+ +P A I++K + A +AA++ARDL RRK VL+ ++LPGKL+DCS Sbjct: 361 VGEALTEYLDFNPSVADAILEKAIQAFNAAEAAKKARDLVRRKSVLESSTLPGKLSDCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + E+ +LIT Sbjct: 421 RDPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI + F + LRYH+I +MTDADVDGAHIRTLLLTFF+R L+ G++YI P Sbjct: 481 ALGLGIKGEDFAPDTLRYHRICLMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + RGK+ Y E+ L+D + + + G + L + ++ Sbjct: 541 PLYKLERGKNHTYCYSEKELQDGIDAMPTNAKYNIQRFKGLGEMMPQQLWDT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + E I V + RLN Sbjct: 596 PETRTLKRVEIEDAAEADRIFTVLMGDRV-APRRDFIETYGPRLNM 640 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 10/131 (7%) Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSL---LDTIFSIGRKGIS 735 + +F +Y+R ++ I + L + L +D + + + + Sbjct: 517 LLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHTYCYSEKELQDGIDAMPTNAK--YN 574 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEM QLW+TT+NP+TR+L RV+I DA++AD +F+ LMGD V PRR+FI+ Sbjct: 575 IQRFKGLGEMMPQQLWDTTMNPETRTLKRVEIEDAAEADRIFTVLMGDRVAPRRDFIETY 634 Query: 796 S--LP-SALDI 803 L + LDI Sbjct: 635 GPRLNMADLDI 645 >gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125] gi|4033396|sp|O50627|GYRB_BACHD RecName: Full=DNA gyrase subunit B gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.] gi|5672652|dbj|BAA82690.1| 78%-identity [Bacillus halodurans] gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125] Length = 637 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 404/591 (68%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE++ G+ Sbjct: 1 MTR--EQQAYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSIDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + D S TV+DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGL Sbjct: 58 CDEIGVVIEEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L++ + REG ++ F G+ L V G + TGT++ F P D Sbjct: 118 HGVGASVVNALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIG-TTDRTGTKIHFKPDGD 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F YDTL RLREL+FLN ++I + D R E + Y+GGI +FV +L+R Sbjct: 177 IFTETTVFEYDTLASRLRELAFLNKGLRIKITDMREEEKSDE-FHYEGGIASFVEHLNRT 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L ++PI I+G + + +++A+++NDG+ N+ F NNI +GGTH SG ++ LTR Sbjct: 236 RETLHETPIHIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K K+ ++ G+D REG T+++S+K+PDP+F QTK KL +SE R++ +S Sbjct: 296 INDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSL 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + S +L EHP A+ +V K L AS R+AA++AR+LTRRK L+++SLPGKLADCS Sbjct: 356 FTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSS 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD SE+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI +IT Sbjct: 416 RDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D FDI K RYHKIIIMTDADVDGAHIRTL+LTFF+R M LI +G++YI +P Sbjct: 476 ALGTGIG-DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY + +GK +QY + L++ L + G ++ + L Sbjct: 535 PLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQLWE 585 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 98/450 (21%), Positives = 168/450 (37%), Gaps = 51/450 (11%) Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL------R 454 R L + ++ R+ +KS+ F EG A R+RE P+ + Sbjct: 192 RLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQ 251 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK----------LRYHKIIIMT 504 G + + D S+ I + + T G K R H + + Sbjct: 252 GVYVEIAVQYNDGFTSN--IYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKES 309 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558 D ++ G +R L ++P G + + +++ + Sbjct: 310 DPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQ 369 Query: 559 LEDYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 + L+++ L K + + L + D D I + Y Sbjct: 370 VARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGD 429 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664 + A + ++ + + + RL+ I +E G ++ DI Sbjct: 430 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIGDDFDIEK 489 Query: 665 KRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKIT- 717 R + + ++G+ I + F +Y R L + G I+ Sbjct: 490 ARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAY 549 Query: 718 ---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +L + + G +QRYKGLGEMN SQLWETT++P R++L+V + DA +AD Sbjct: 550 GDAELQEILSQLPDKAKPG--IQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKAD 607 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ++F LMGD VEPRR+FIQEN+ LDI Sbjct: 608 EIFEILMGDRVEPRRDFIQENARYVKNLDI 637 >gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917] gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917] Length = 705 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 286/638 (44%), Positives = 399/638 (62%), Gaps = 19/638 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V L DGS +V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCSEIEVVLGDDGSASVTDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASAPQPVEEKGRTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IF+ F+Y TL RLREL++LN V+I D+R + E FY+GGI Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESALNAEGDAHEEVYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K PL I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNAEKDPLHPEIIYVNAEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPSVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ ++ Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDAKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + GF+YI PPLY + RGK+ Y +E+ L+ L G + L Sbjct: 540 VEGGFIYIACPPLYKVERGKNHTYCYNEQDLQTTLAGFGEKANYNIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 +D + + +E I + + Sbjct: 600 WET-----TMDPTTRLMKRVEIEDALEADRIFTILMGD 632 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 125/322 (38%), Gaps = 29/322 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 +D+++ G +IR L ++P G + + GI + + Sbjct: 324 SDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSQYLEFNP 383 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 384 SVIDMILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPAESEIYIVEG 443 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662 +G + ++ LN + + + + D Sbjct: 444 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDARIYKNTEIQALITALGLGIKGEDFDA 503 Query: 663 LVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKIK- 715 R R V ++G+ I + + + + E L + G Sbjct: 504 KNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGFIYIACPPLYKVERGKNHTY 563 Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L T+ G K ++QR+KGLGEM QLWETT++P TR + RV+I DA +AD Sbjct: 564 CYNEQDLQTTLAGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRLMKRVEIEDALEAD 623 Query: 775 DLFSRLMGDEVEPRREFIQENS 796 +F+ LMGD+V PRREFI+ + Sbjct: 624 RIFTILMGDKVAPRREFIETTA 645 >gi|254495273|ref|ZP_05108197.1| DNA gyrase subunit B [Polaribacter sp. MED152] gi|85819627|gb|EAQ40784.1| DNA gyrase subunit B [Polaribacter sp. MED152] Length = 645 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 286/622 (45%), Positives = 407/622 (65%), Gaps = 13/622 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + SYDA SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSEE-KKHSYDASSIQALEGMEHVRMRPSMYIGDV-GIRGLHHLVYEVVDNSIDEAMGGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S T DNGRGIP LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 59 CDTIEVTINEDNSITTKDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + +EG I++ + G P+ G + TGT VTFLP Sbjct: 119 HGVGVSCVNALSDHLTATVHKEGKIWQQEYERGKTLYPVKTIGDT-DFTGTIVTFLPDKS 177 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF+ ++NY+TL R+REL++LN + I+L DKR+ + T G+ F+ Y Sbjct: 178 IFTQSTEYNYETLATRMRELAYLNKGITITLTDKRNKDDEGNFISETFHSNKGLPEFIEY 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ L+ + I ++G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 238 LDSTREQLIANVISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRG 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y ++S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 298 LTGTLKKYADESGLLKNVKFDIAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVTSA 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEE+P +AK IV+KV+ A+ R AAR+ARD+ +RK V+ I LPGKL+ Sbjct: 358 VSQAVSEMLTDYLEENPNDAKTIVQKVILAATARHAARKARDMVQRKSVMSIGGLPGKLS 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE DP + E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 418 DCSETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 477 Query: 476 TLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +++K+RYHK++IM DADVDG+HI TL+LTFFFR M ++ Sbjct: 478 NMFTALGVSIGTEEDPRALNLSKIRYHKVVIMCDADVDGSHIATLILTFFFRYMKEMVEQ 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++YI PPLY + +G+ QY D++ + S I+ + + ++ + Sbjct: 538 GYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMGGSVTIQRYKGLGEMNAEQLWDTTM 597 Query: 592 D-DALKIDKLIKDFYPNHDKTF 612 + + + K++ D D+ F Sbjct: 598 NPEFRTLRKVVIDSPTEADRVF 619 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 7/129 (5%) Query: 679 GSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGI 734 + I +F +Y + + L L+ G K + L+ + Sbjct: 520 ATLILTFFFRYMKEMVEQGYIYIATPPLYLVKKGQKRQYAWDDDQRDLIAQQMGGS---V 576 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMNA QLW+TT+NP+ R+L +V I ++AD +FS LMGDEV PRR+FI+ Sbjct: 577 TIQRYKGLGEMNAEQLWDTTMNPEFRTLRKVVIDSPTEADRVFSMLMGDEVPPRRDFIER 636 Query: 795 NSLPSALDI 803 N+ + +D+ Sbjct: 637 NAKYANIDV 645 >gi|305664998|ref|YP_003861285.1| DNA gyrase subunit B [Maribacter sp. HTCC2170] gi|88707410|gb|EAQ99655.1| DNA gyrase subunit B [Maribacter sp. HTCC2170] Length = 646 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 288/601 (47%), Positives = 396/601 (65%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ +Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEEANKKNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S T DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDRIDVTINEDNSITTRDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS LK + R+G I+E + G P+ G + GTEVTF P + Sbjct: 120 HGVGVSCVNALSDHLKATVFRDGKIWEQEYERGKSLYPVKSVGETK-ERGTEVTFHPDTT 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF+ ++Y+TL +R+RELS+LN V IS+ DKR E + G++ FV + Sbjct: 179 IFTQTIEYSYETLSNRMRELSYLNKGVTISITDKRQKDEKGEFVSESFVSTEGLKEFVRF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++ L Q I ++G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 239 LDGNREALTQGVISMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K V GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTSTLKKYADASGMLDKLKFEVQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEEHP +AKIIV+KV+ A+ R AA +AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQSVSEMLTNYLEEHPDDAKIIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS++DP E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSDQDPVNCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + KLRYHK++IM DADVDG+HI TL+LTFFFR M LI N Sbjct: 479 NIYTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELIEN 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y +E ++ + + S I+ + + ++ + Sbjct: 539 GHVYIATPPLYLVKKGSKKRYAWSDEERDEIAESFNGSVGIQRYKGLGEMNAEQLWDTTM 598 Query: 592 D 592 + Sbjct: 599 N 599 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 9/200 (4%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + + A EK + + Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLEKLRYHK------V 507 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F + I + + L L+ G K + Sbjct: 508 VIMCDADVDGSHIETLILTFFFRYMRELIENGHVY-IATPPLYLVKKGSKKRYAWSDEER 566 Query: 724 DTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D I + G + +QRYKGLGEMNA QLW+TT+NP+ R+L ++ I +A+++D +FS LMG Sbjct: 567 DEI-AESFNGSVGIQRYKGLGEMNAEQLWDTTMNPEFRTLRQITIDNATESDRVFSMLMG 625 Query: 783 DEVEPRREFIQENSLPSALD 802 DEV PRREFI++N++ + +D Sbjct: 626 DEVPPRREFIEKNAVYANID 645 >gi|294781815|ref|ZP_06747148.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA] gi|294481925|gb|EFG29693.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA] Length = 639 Score = 611 bits (1575), Expect = e-172, Method: Composition-based stats. Identities = 272/592 (45%), Positives = 390/592 (65%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N+ SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V + D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++EGN+Y + G + + + GS N+ GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEANEHGTTVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF +NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + Sbjct: 177 DIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEETYKFNGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + ++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 EATIIDKPFYVSAEQDNVGVDVTFTYTTSQNETIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG +++S K+P P+F QTK KL +SEV +V S Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNSI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+ L +LE++P KI+V+K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSSSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEG+SAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGNSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG D+FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI P Sbjct: 477 AFGTSIG-DTFDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMRELINEGNIYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY ++ GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLAQMNQDNKKYTIQRYKGLGEMNPEQLWE 587 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 103/266 (38%), Gaps = 9/266 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGNSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + ++ S Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGDTFDISKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + + I +F +Y R N + K I L Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMRELINEGNIYIACPPLYKVSSGKQIIYAYNDL 553 Query: 723 -LDTI---FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + + K ++QRYKGLGEMN QLWETT+NPD R LL+V + +A +AD LF Sbjct: 554 ELKNVLAQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSVDNAREADMLFD 613 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD+VEPRREFI+E++ +DI Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639 >gi|229496104|ref|ZP_04389826.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406] gi|229317000|gb|EEN82911.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406] Length = 653 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 295/604 (48%), Positives = 389/604 (64%), Gaps = 17/604 (2%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MSD + Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+ Sbjct: 1 MSDENNKSTEQQEYSAGSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY + VT+ D S +V DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKV Sbjct: 60 LAGYCTDVKVTILEDNSISVEDNGRGIPVDIHPKEGRSALEVVMTVLHAGGKFDKGSYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVS VNALS+ L+ + R+G + F G + G + + TGT VTF Sbjct: 120 SGGLHGVGVSCVNALSTHLRADVYRDGKHFVQEFSKGKPLYSVKEEGES-DRTGTTVTFT 178 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAF 232 P + IF+V + + L HRLREL+FLN+ +++SL D R + + + G++ F Sbjct: 179 PDNSIFTVSIYQFKILAHRLRELAFLNAGLRLSLTDLRERDEEGNPLTEVFYSEDGLKEF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V ++D+ K L+ I I+ + + I++AM +N Y ENV + N+I +GGTHL+G Sbjct: 239 VRFIDQSKVNLLDDVIHIKNDKGEVPIEVAMTYNQDYQENVYSYVNDINTIEGGTHLTGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R ALTR + Y S +K K +V GDD REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 RRALTRTLKQYATDSKMLEKVKVNVEGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 +VES V++ L+ +LEEHP +AK IV KV+ A+ R AA AR L RK L LPG Sbjct: 359 IGIVESAVSEALAIYLEEHPQQAKAIVDKVVLAAQARHAAANARKLVLRKSPLAAGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL+DC+ +DP K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+L SQ Sbjct: 419 KLSDCTSKDPAKCEIFLVEGDSAGGTAKQGRDRMYQAILPLRGKILNVEKAMQHKVLDSQ 478 Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG IG + +KLRYHKIIIMTDADVDG+HI TL+LTFFFR M SL Sbjct: 479 EIRNIYTALGVTIGTEEDSKALNLSKLRYHKIIIMTDADVDGSHIATLILTFFFRNMRSL 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKN 585 I NG++Y+ PPLY +GK Y E+ ++ + E G + + Sbjct: 539 IDNGYVYLATPPLYLCRKGKEQAYCWTEQQRRAFIDKYADGNESRVHVQRYKGLGEMMEE 598 Query: 586 DLRN 589 L Sbjct: 599 QLWE 602 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 2/75 (2%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 + R + +QRYKGLGEM QLWETT+NPD R L ++ I A+ AD FS LMG++V P Sbjct: 580 NESR--VHVQRYKGLGEMMEEQLWETTMNPDNRILKQITIESAASADRTFSMLMGEDVPP 637 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 638 RREFIEDNATYARID 652 >gi|220927465|ref|YP_002504374.1| DNA gyrase subunit beta [Clostridium cellulolyticum H10] gi|219997793|gb|ACL74394.1| DNA gyrase, B subunit [Clostridium cellulolyticum H10] Length = 642 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 291/593 (49%), Positives = 405/593 (68%), Gaps = 7/593 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD NS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++ N+IDE+L G Sbjct: 1 MSDINNNSIYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVANSIDEALAGR 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 DII V ++ D S TV+DNG GIP +H + GI EV+ T LHAGGKF +Y VSGGL Sbjct: 60 CDIIKVIVHKDNSVTVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS +++ +KREG+IY + G + + G ++TGT TF P + Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPLTSVDIVGDT-DETGTITTFKPDPE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++D + R RE++FLN + I LID+R E E + Y+GGI +FV YL++ K Sbjct: 179 IFEEIVYDFDAMISRYREMAFLNKGINIKLIDERPEESVEKNLHYEGGIISFVEYLNKSK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL I ++GSRD +++AM++ND Y+E+V + NNI +GGTHL+G R+A+T+ + Sbjct: 239 EPLHDEVIYLEGSRDANIVEVAMQYNDSYNESVFTYANNIATTEGGTHLTGFRAAITKVL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K++ +++ G+D REG T+VLS+K+P+P+F QTK KL +SE+R++VE+ V Sbjct: 299 NDYARKFNILKENDKNLSGEDVREGLTAVLSVKLPEPQFEGQTKTKLGNSEIRTLVENVV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +D L +LEEHP AKII+ K + A+ R+AAR+AR+LTRRK +D ++LPGKLADCSE+ Sbjct: 359 SDKLFIFLEEHPAVAKIILDKSITAARAREAARKARELTRRKSAMDSSTLPGKLADCSEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K+E+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+ ++++ +I A Sbjct: 419 DPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRMDKVYDNEKLSPVIIA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG D FD +KLRY KIIIM DADVDG+HIR LLLTFFFR M L+ G +YI PP Sbjct: 479 LGAGIG-DEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589 L+ + +GK Y D+ L+ + ++ G ++ + L Sbjct: 538 LFKVYKGKEEYYAYDDIELDKIFKERGWRKDDPNVNIQRFKGLGEMNPDQLWE 590 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 11/191 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL+ + + + S D ++ V + Sbjct: 455 MLNVEKSRMDKVYDNEKLSPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG------- 733 F F + + + + ++ LD IF +G Sbjct: 515 LTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKEEYYAYDDIE-LDKIFKE--RGWRKDDPN 571 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QR+KGLGEMN QLWETT+NP+TR++++V + DA AD++F + MGD+VEPRRE+IQ Sbjct: 572 VNIQRFKGLGEMNPDQLWETTMNPETRTIIKVDLEDAISADEVFCKFMGDKVEPRREYIQ 631 Query: 794 ENSLPS-ALDI 803 ++ LDI Sbjct: 632 MHARDVSNLDI 642 >gi|325287192|ref|YP_004262982.1| DNA gyrase subunit B [Cellulophaga lytica DSM 7489] gi|324322646|gb|ADY30111.1| DNA gyrase, B subunit [Cellulophaga lytica DSM 7489] Length = 646 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 279/601 (46%), Positives = 401/601 (66%), Gaps = 11/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEEANKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V +N DGS T DNGRGIP LHK+EG+SA +V+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDNISVVINEDGSITTKDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+ LK + REG I+E + G P+ G +TGT VTF P Sbjct: 120 HGVGVSCVNALSNSLKATVYREGKIWEQEYERGKALYPVKSIGETE-ETGTIVTFYPDDT 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSY 235 IF+ +NY+TL +R+REL++LN V IS+ DKR + + + + G++ F+ + Sbjct: 179 IFTQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFYSEEGLKEFIKF 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++ L++ + ++G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 239 LDGNREQLIREVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHEGGTHLSGFRRG 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 LTSTLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LEE+P +AK+IV+KV+ A+ R AA +AR++ +RK V+ I LPGKL+ Sbjct: 359 VSQAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLS 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+D K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 DCSEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIK 478 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK++IM DADVDG+HI TL+LTFFFR M LI Sbjct: 479 NIYTALGVTIGTEEDSKALNLDKLRYHKVVIMCDADVDGSHIETLILTFFFRFMRELIEG 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y +++ ++ + + S I+ + + ++ + Sbjct: 539 GHVYIATPPLYLVKKGTKKRYAWNDKERDEIADSFNGSVGIQRYKGLGEMNAEQLWDTTM 598 Query: 592 D 592 + Sbjct: 599 N 599 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + + A +K + I+ Sbjct: 454 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIGTEEDSKALNLDK---LRYHKVVIM 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 G + ++ + + L L+ G K + Sbjct: 511 CDADVDGSHIETLILTFFFRFM----RELIEGGHVYIATPPLYLVKKGTKKRYAWNDKER 566 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 D I + +QRYKGLGEMNA QLW+TT+NPD R+L +V I +A+++D +FS LMGD Sbjct: 567 DEIADSFNGSVGIQRYKGLGEMNAEQLWDTTMNPDFRTLRQVTIENATESDRIFSMLMGD 626 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N++ + +D Sbjct: 627 EVPPRREFIEKNAVYANID 645 >gi|227485761|ref|ZP_03916077.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] gi|227236316|gb|EEI86331.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] Length = 642 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 291/589 (49%), Positives = 405/589 (68%), Gaps = 8/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N ++YDA +I++L+GL+ V+ RP MYIG T GLHH++YEV+DN++DE+L G Sbjct: 9 MTEN---NNYDAGNIRVLEGLEPVRLRPGMYIGSTSS-RGLHHLVYEVVDNSVDEALAGR 64 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D +V D+G GIP H S E ++T LHAGGKF+ +YKVSGGL Sbjct: 65 CDYIKVTINKDNVVSVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYKVSGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L +KR+G++Y+M F G + + V G +TGT++TF P + Sbjct: 125 HGVGVSVVNALSEYLIAEVKRDGHVYKMEFARGEVTKDIEVIGDTT-ETGTKITFKPDGE 183 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F L++R RE++FLN V+I D+R E E + ++GGI FVS+L+R+K Sbjct: 184 IFDTTIFERSILENRFREMAFLNKGVEIRFEDER--ENFETSFKFEGGISEFVSFLNRNK 241 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+M+ GS++ I ++ A ++ DGY EN+L + NNI +GGTHLSGLRS+LTR + Sbjct: 242 DPIMEMIPHFDGSQEGIEVEFAFQYTDGYSENILSYANNIQTPEGGTHLSGLRSSLTRSV 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K ++ ++ G+D REG T+++S+K+ DP+F QTK KL +SEVR VV+S+V Sbjct: 302 NDYARKYNFIKDNEENLQGEDIREGITAIISVKISDPQFEGQTKSKLGNSEVRGVVDSYV 361 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ L+A+LEE+P AK I+ K L + R+AAR+ARDLTR++ +LD A+LPGKLADC Sbjct: 362 SEHLTAFLEENPKPAKSIIDKALASRRAREAARKARDLTRKRSILDSATLPGKLADCQST 421 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D ++E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A DK+L+S+EI +ITA Sbjct: 422 DISENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDKVLNSEEIKNMITA 481 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +Y+ PP Sbjct: 482 FGTGIGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDEGHVYVALPP 540 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I++GK +YV ++ + Y+ + G ++ L Sbjct: 541 LYRISQGKKERYVYSDDEKDKYIKELGDATFKINRYKGLGEMNAEQLWE 589 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V + ++ N + K + S ++ V + Sbjct: 458 IMNVEKAHLDKVLNSEEIKNMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + + I +G + RYK Sbjct: 518 LTFFYRYMKDLIDEGHVYVALPPLYRISQGKKERYVYSDDEKDKYIKELGDATFKINRYK 577 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREFIQENSLP 798 GLGEMNA QLWETT++PD R LLRV+ D DD FS LMG++VEPRR FIQEN+ Sbjct: 578 GLGEMNAEQLWETTMDPDRRVLLRVE-EDLESTTTDDTFSLLMGEKVEPRRNFIQENAKY 636 Query: 799 S-ALDI 803 +D+ Sbjct: 637 VTDIDV 642 >gi|313204151|ref|YP_004042808.1| DNA gyrase subunit b [Paludibacter propionicigenes WB4] gi|312443467|gb|ADQ79823.1| DNA gyrase subunit B [Paludibacter propionicigenes WB4] Length = 654 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 288/626 (46%), Positives = 407/626 (65%), Gaps = 16/626 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + +++Y A SIQ+L+GL+AV+KRP+MYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 7 AKEAASANYGASSIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVYEVVDNSIDEAMAGHC 65 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V +N + S TV DNGRGIP D+H++EG SA EV+MT LHAGGKF++ SYKVSGGLH Sbjct: 66 NNIQVFINENNSITVIDNGRGIPVDMHEKEGKSALEVVMTVLHAGGKFDKDSYKVSGGLH 125 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVS VNALS+++++ + R G +Y + GI P+ G++ + T+ TFLP I Sbjct: 126 GVGVSCVNALSTYVRVEVSRNGKLYMQEYSCGIPKAPVQEIGTSTTNG-TKTTFLPDDSI 184 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLD 237 F + YD L RLREL+FLN+ + ++L DKR + G++ FV Y+D Sbjct: 185 FIESIYKYDILAGRLRELAFLNAGITLTLTDKRQLNDDGSFKTEVFHSDEGLKEFVEYID 244 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++PL++S I I ++ I +++AM +N Y+EN+ + NNI +GGTHL+G R LT Sbjct: 245 EAREPLIESVIHISTEKNGIPVEIAMTYNTSYNENIHSYVNNINTIEGGTHLAGFRRGLT 304 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y E S +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV V+ Sbjct: 305 RTLKKYAEDSKMLEKLKIEISGDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEVMGSVD 364 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V + L +LEE+P A+IIV+KV+ A+ R AAR+AR++ +RK L LPGKLADC Sbjct: 365 MAVGEALGNYLEENPKAARIIVEKVILAATARYAARKAREMVQRKSPLSGGGLPGKLADC 424 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 +++DP+K ELFLVEGDSAGG+AKQGRSR+ QAILPLRGKILNVE+A K+L S+EI + Sbjct: 425 ADKDPEKCELFLVEGDSAGGTAKQGRSRQFQAILPLRGKILNVEKAMQHKVLESEEIRNI 484 Query: 478 ITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 TALG IG + ++ KLRYHK+IIMTDADVDG+HI TL++TFFFR M LI G+ Sbjct: 485 YTALGVTIGTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFRHMKELIEQGY 544 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LYI PPLY +GK +Y E + ++ + + + + +++ Sbjct: 545 LYIATPPLYLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLGE------MNE 598 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVIS 619 D + + + IE A + Sbjct: 599 IQLWDTTMNPEHRTLRQVNIENAAEA 624 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 13/161 (8%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-----RIFSNRIEENYLTILS--- 706 G+ ++S L + R + + + S + R IE+ YL I + Sbjct: 493 GTEDDSKALNMKKLRYHKVIIMTDADVDGSHIATLIMTFFFRHMKELIEQGYLYIATPPL 552 Query: 707 LICNGDKIKITGPCSLL--DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +C K++ I G GI QRYKGLGEMN QLW+TT+NP+ R+ Sbjct: 553 YLCKKGKVEEYCWTEAQRQTFIEKYGGGTDSGIHTQRYKGLGEMNEIQLWDTTMNPEHRT 612 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L +V I +A++AD +FS LMGD+V PRR+FI++N+ + +D Sbjct: 613 LRQVNIENAAEADHVFSMLMGDDVAPRRQFIEQNATYAKID 653 >gi|325279486|ref|YP_004252028.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712] gi|324311295|gb|ADY31848.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712] Length = 654 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 296/605 (48%), Positives = 388/605 (64%), Gaps = 18/605 (2%) Query: 1 MSDNIQNSS--YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+ + Y ADSIQ+L+GL+AV+ RPSMYIGD + GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIEKNEREYSADSIQVLEGLEAVRMRPSMYIGDVN-VKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ D I VT+N D S +V DNGRGIPT H +E SA EV+MT LHAGGKF++ SYKVSG Sbjct: 60 GFCDHIQVTINEDNSISVRDNGRGIPTARHSKENKSALEVVMTVLHAGGKFDKDSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS+ L I REG I+ + GI + V G + TGT +TFLP Sbjct: 120 GLHGVGVSCVNALSTTLIAEIHREGKIWRQEYHKGIPAGDVQVVGDT-DRTGTTITFLPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFV 233 IF V ++ YD L RLREL++LN +++SL DKR + PR F + G+ FV Sbjct: 179 DTIFYVTEYKYDILSARLRELAYLNKGIRLSLTDKREIDPETNAPRHEVFFSQHGLSEFV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLD ++ L++ I I ++ I +++A+ +N G+ ENV + NNI +GGTHL+G + Sbjct: 239 EYLDNTREKLIEDTIDIATEKNGIPVEVALHYNTGFSENVFSYVNNINTIEGGTHLTGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 LT + +Y E K K + DD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 RGLTTTLKAYAESHGMLSKLKFDINSDDFREGLTAVISVKVAEPQFEGQTKTKLGNTEVG 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 + V V+ L +LEE+P EAK IV KV+ A+ R AAR+ARDL +RK VL + LPGK Sbjct: 359 TAVSQAVSTVLENYLEENPREAKAIVDKVILAATARHAARKARDLVQRKTVLSGSGLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS+ DP K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A ++ S E Sbjct: 419 LADCSDNDPAKCEIFLVEGDSAGGTAKQGRDRRYQAILPLRGKILNVEKAMMHRVYESDE 478 Query: 474 IGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 I + ALG IG KLRYHKI+IM DADVDGAHI TL++T FFR M +I Sbjct: 479 IKIIFQALGITIGTQEDSKAVNLEKLRYHKIVIMADADVDGAHIATLIMTLFFRFMRPVI 538 Query: 530 HNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE----IELFCDSKGVISK 584 NG+LYI PPLY + +G +Y ++ LE + S + G +SK Sbjct: 539 ENGYLYIATPPLYSVKKGNKEQRYCWTDKELEQLVNEMSNGKGDAGLHIQRYKGLGEMSK 598 Query: 585 NDLRN 589 L Sbjct: 599 EQLWE 603 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 8/107 (7%) Query: 703 TILSLICNGDKIKIT-----GPCSLLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTL 755 L + G+K + L++ S G+ G+ +QRYKGLGEM+ QLWETT+ Sbjct: 548 PPLYSVKKGNKEQRYCWTDKELEQLVNE-MSNGKGDAGLHIQRYKGLGEMSKEQLWETTM 606 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +P+ R L +V I +A+ AD +FS LMGD+V PRR+FI++N+ + +D Sbjct: 607 SPENRILRQVSIENAADADRIFSMLMGDDVPPRRQFIEQNATYATID 653 >gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991] gi|158433357|gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991] Length = 648 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 281/638 (44%), Positives = 404/638 (63%), Gaps = 12/638 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY AD IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G+ Sbjct: 12 MENGKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGF 70 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I + + D V DNGRG+P + ++ GIS E I T LHAGGKF +YKVSGGL Sbjct: 71 ATDIEIAIEKDNVIRVEDNGRGMPVGIVEKTGISGVETIFTVLHAGGKFGGGAYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + + G + + F N G L V G + G+ V F + Sbjct: 131 HGVGASVVNALSEWLEVTVHQNGKKHFLRFENGGKPSGALKVIGDT-DKHGSVVRFKADA 189 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ +++DTL R+R+L+FLN +++ +ID+R E + I Y GGI +V YL++ Sbjct: 190 SIFTETQVYSFDTLNTRIRQLAFLNKGIRLVIIDEREEEAKRIEYKYDGGIRQYVEYLNK 249 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K L + I ++G + I ++A+++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 250 NKNVLHEDVIYVEGLEEGILAEVALQYNDGYMPNIYSFCNNINTMEGGTHEDGFRLALTR 309 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y ++ K ++ GDD REG T+++S+K PDP++ QTK KL +SEVR +V Sbjct: 310 VINAYARENN-LIKKDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSG 368 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + D L +L E+P AKIIV+K + AS R AA++AR+LTRRK L+I SLPGKLADCS Sbjct: 369 ILGDQLERFLIENPTTAKIIVEKGVLASKARMAAKKARELTRRKSALEITSLPGKLADCS 428 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR ++ + EI +++ Sbjct: 429 SKDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLHRIFENNEIRSMV 488 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA G GIG + DI+KLRYHKI+IMTDADVDGAHI TL+LTFF+R + +I G++YI Sbjct: 489 TAFGCGIGDEI-DISKLRYHKIVIMTDADVDGAHICTLMLTFFYRFLRPVIEGGYVYIAM 547 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ + +G ++YV EE +E + ++ + G ++ L +D Sbjct: 548 PPLFKVAKGNRVEYVYKEEEMERVRAEMGENVNVQRY-KGLGEMNPEQLWET-----TMD 601 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + + +E I + E + + Sbjct: 602 PAFRTLKQVNIEDAVEADAIFEMLMGEEVEPRREFIQE 639 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 46/101 (45%), Positives = 68/101 (67%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L + G++++ ++ + + + +++QRYKGLGEMN QLWETT++P R+L Sbjct: 548 PPLFKVAKGNRVEYVYKEEEMERVRAEMGENVNVQRYKGLGEMNPEQLWETTMDPAFRTL 607 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +V I DA +AD +F LMG+EVEPRREFIQEN+ + LDI Sbjct: 608 KQVNIEDAVEADAIFEMLMGEEVEPRREFIQENAKYATLDI 648 >gi|237738561|ref|ZP_04569042.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31] gi|229424044|gb|EEO39091.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31] Length = 639 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 269/592 (45%), Positives = 387/592 (65%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V + D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++EGN+Y + G + + + GS ++ GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKIIGSCEASEHGTTVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF +NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + Sbjct: 177 DIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + ++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 ETTIIDKPFYVSAEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG +++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P KI+V+K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSNSLKIFLEDNPAITKIVVEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG+ FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI G +YI P Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY + GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVASGKQIIYAYNDLELKNILAQMNQENKKYTIQRYKGLGEMNPEQLWE 587 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 9/266 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720 ++ V + + I +F +Y + K I Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVASGKQIIYAYNDL 553 Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF Sbjct: 554 ELKNILAQMNQENKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD+VEPRREFI+E++ +DI Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639 >gi|119355886|ref|YP_910530.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266] gi|119353235|gb|ABL64106.1| DNA gyrase subunit B [Chlorobium phaeobacteroides DSM 266] Length = 643 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 289/596 (48%), Positives = 399/596 (66%), Gaps = 12/596 (2%) Query: 1 MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M + + S Y A +IQIL G++ V+KRP+MYIGD GLHH+IYE++DN+IDE+L Sbjct: 1 MQETVPQAPSPYIASNIQILDGIEHVRKRPAMYIGDIH-TRGLHHLIYEIVDNSIDETLG 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ + I V+LN DGS TV D+GRGIP D+H ++ SA E++MT + AGGKF++ SYKVSG Sbjct: 60 GFNEYIFVSLNPDGSVTVIDHGRGIPVDIHPQKQKSALELVMTVIGAGGKFDKGSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG SVVNALS W ++ + R+G Y F G+ + G + + GT+ TF P Sbjct: 120 GLHGVGASVVNALSEWCEVEVYRDGKAYFQRFERGVPQGNVREIGLS-DQKGTKTTFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + IF +F D + R+REL+FLN ++ I++ + + + Y+GG++ FV + D Sbjct: 179 NLIFKTTEFRKDIIIDRMRELAFLNKNLSITV---QDADGAQEIFHYEGGLKEFVRFTDI 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L++ PI G RD +++A+++ND Y ENV + NNI +GGTH++G R ALTR Sbjct: 236 NRLSLIKEPIYFIGERDTTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y +K+ K K S+ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VES Sbjct: 296 TLNLYAQKNDLLKNLKLSLTGDDFKEGLTAVISVKVEEPQFEGQTKTKLGNSETQSIVES 355 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 VN+ LS + E +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS Sbjct: 356 IVNELLSEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCS 415 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 DP+ EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I Sbjct: 416 INDPEHCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTII 475 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 ALGT G++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G +YI + Sbjct: 476 LALGTSFGEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVYIAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + GK QY D+E + + + G ++ L + Sbjct: 536 PPLYLVKSGKDQQYAWDDEERNSITDTLKKMQKGKANIHIQRYKGLGEMNPEQLWS 591 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + ++ L L+ Sbjct: 483 GEEEFSPEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYMRSLIEAGKVY-IAQPPLYLV 541 Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +G + L G+ I +QRYKGLGEMN QLW TT++P RS Sbjct: 542 KSGKDQQYAWDDEERNSITDTLKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 600 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL+V + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 601 LLQVSVENAREADQIFSTLMGDKVEPRREFIEKNARYVRRLDV 643 >gi|326202777|ref|ZP_08192644.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782] gi|325986854|gb|EGD47683.1| DNA gyrase, B subunit [Clostridium papyrosolvens DSM 2782] Length = 642 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 288/593 (48%), Positives = 402/593 (67%), Gaps = 7/593 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D SSYD IQ+L+GL+AV+KRP MYIG T GLHH++YE++ N++DE+L G Sbjct: 1 MNDFNNTSSYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVANSVDEALAGR 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV+DNG GIP +H + GI EV+ T LHAGGKF +Y VSGGL Sbjct: 60 CDTIQVIVHKDNSITVTDNGSGIPVGIHPKMGIPTLEVVHTILHAGGKFGSGAYSVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS +++ +KREG+IY + G + + G D+GT TF P D Sbjct: 120 HGVGASVVNALSESMEVEVKREGHIYRQKYSRGKPITSVEIIGETE-DSGTITTFKPDPD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F++D + R RE++FLN ++I LID+R E E + Y+GGI +FV YL++ K Sbjct: 179 IFEDIVFDFDVMITRYREMAFLNRGIKIQLIDQRPDEIIEKNLHYEGGIISFVEYLNKTK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL I +G RD +++AM++ND Y+E V + NNI +GGTHL+G RSA+T+ + Sbjct: 239 EPLHDKVIYFEGIRDANIVEVAMQYNDNYNETVFSYANNIATTEGGTHLTGFRSAITKVL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K +++ +++ G+D REG T+V+S+K+P+P+F QTK KL +SE+R++VE+ V Sbjct: 299 NDYARKFNIIRENDKNLSGEDVREGLTAVISVKLPEPQFEGQTKTKLGNSEIRTLVENVV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +D L+ +LEE+P AKII+ K L A+ RDAAR+AR+LTRRK +D ++LPGKLADCSE+ Sbjct: 359 SDKLNIFLEENPAIAKIILDKSLTAARARDAARKARELTRRKSAMDSSTLPGKLADCSEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K+E+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+ ++++ +I A Sbjct: 419 DPTKTEIFIVEGDSAGGSAKQGRDRKIQAILPLWGKMLNVEKSRLDKVFDNEKLAPVIIA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GIG D FD +KLRY KIIIM DADVDG+HIR LLLTFFFR M L+ G +YI PP Sbjct: 479 LGAGIG-DEFDTSKLRYDKIIIMADADVDGSHIRMLLLTFFFRYMRPLVEQGHVYIAMPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589 L+ + +GK Y D+ + ++ ++ G ++ + L Sbjct: 538 LFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNIQRFKGLGEMNPDQLWE 590 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 5/188 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KLA + + + S D ++ V + Sbjct: 455 MLNVEKSRLDKVFDNEKLAPVIIALGAGIGDEFDTSKLRYDKIIIMADADVDGSHIRMLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG-RK---GISM 736 F F + + + + D+ + G RK +++ Sbjct: 515 LTFFFRYMRPLVEQGHVYIAMPPLFKVYKGKDEYYAYDDRQVSKIFEDRGWRKDDPNVNI 574 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QR+KGLGEMN QLWETT+NP+TR++++V + DA AD++FS MG++VEPR+E+I ++ Sbjct: 575 QRFKGLGEMNPDQLWETTMNPETRTIMKVDVQDAITADEVFSMFMGEKVEPRKEYIHLHA 634 Query: 797 LPSA-LDI 803 LDI Sbjct: 635 KDVTYLDI 642 >gi|218264667|ref|ZP_03478430.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii DSM 18315] gi|218221854|gb|EEC94504.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii DSM 18315] Length = 651 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 289/602 (48%), Positives = 401/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ + V +N D S +V+D+GRGIP D+H++EG+SA EV++T LHAGGKF++ SYKVSG Sbjct: 60 GFCTQVDVVINEDNSISVTDDGRGIPVDIHEKEGVSALEVVLTVLHAGGKFDKGSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK ++R+G I+ F G + + V G + TGT + F P Sbjct: 120 GLHGVGVSCVNALSTYLKAEVRRDGKIHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IFSV ++ Y+ L RLREL+FLN+ + +SL DKR + + G++ FV Sbjct: 179 GSIFSVTEYKYEILATRLRELAFLNAGITLSLTDKRVVKEDGNYKSEIFHSDEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++AM +N ++E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEQLIPDVIHIVTEKQGIPVEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y + S +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK + LPGKL Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478 Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G IG + KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M +LI Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y ++ + ++ E ++ G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQVHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 38/66 (57%), Positives = 53/66 (80%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLW+TT+NP+ R+L ++ I A++AD +FS LMG++V PRREFI+EN+ Sbjct: 585 QRYKGLGEMNDHQLWDTTMNPENRTLKQITIDSAAEADQIFSMLMGEDVGPRREFIEENA 644 Query: 797 LPSALD 802 + +D Sbjct: 645 TYANID 650 >gi|298207945|ref|YP_003716124.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559] gi|83850586|gb|EAP88454.1| DNA gyrase subunit B [Croceibacter atlanticus HTCC2559] Length = 645 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 276/601 (45%), Positives = 390/601 (64%), Gaps = 12/601 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSEESKKQ-YSADSIQALEGMEHVRMRPSMYIGDV-GIRGLHHLVYEVVDNSIDEAMGGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S T DNGRGIP +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 59 CDTIDVIINEDNSITTKDNGRGIPIGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS LK + ++G I+E + G P+ G + +GT VTF P + Sbjct: 119 HGVGVSCVNALSDHLKASVHKDGKIWEQEYERGKPLYPVKAVGDT-DFSGTVVTFHPDNQ 177 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSY 235 IF +NY+TL R+REL+FLN + I+L DKR E F + G+ FV + Sbjct: 178 IFQQTIEYNYETLASRMRELAFLNKGLTITLTDKRQTDDKGEFISERFFSEEGLSEFVRF 237 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ P+++ I ++G ++ + +++AM +N Y EN+ + NNI +GGTHL+G R Sbjct: 238 LDGNRDPIIKDVISMEGEKNGVPVEVAMIYNSSYAENLHSYVNNINTHEGGTHLAGFRRG 297 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + + + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 298 LTSSLKKFADASGMLDKLKFDIAGDDFREGLTAIISVKVSEPQFEGQTKTKLGNREVTSA 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ + +EE+P +AK I++KV+ A+ R AA++AR++ +RK V+ I LPGKL+ Sbjct: 358 VSQAVSEMIEIHMEENPNDAKTIIEKVILAAQARHAAKKAREMVQRKTVMSIGGLPGKLS 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +DP + E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 418 DCSNQDPAECEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMSHKVFENEEIK 477 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHKI+IM DADVDG+HI TL+LTFFFR M LI Sbjct: 478 NIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSHIATLILTFFFRYMKELIEA 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY I +G+ +Y +E+ E S ++ + + ++ + Sbjct: 538 GHIYIATPPLYLIKKGQKKRYAWNEDEREAIANEFKGSVSVQRYKGLGEMNAEQLWDTTM 597 Query: 592 D 592 + Sbjct: 598 N 598 Score = 170 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E V ++ N + E+ K+ + S +V V Sbjct: 459 ILNVEKAMSHKVFENEEIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADVDGSH 518 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735 + F F + I + I L LI G K + + I + + +S Sbjct: 519 IATLILTFFFRYMKELIEAGHIY-IATPPLYLIKKGQKKRYAWNEDEREAIANEFKGSVS 577 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLW+TT+NP+ R+L +V I + +AD +FS LMGD+V PRREFI++N Sbjct: 578 VQRYKGLGEMNAEQLWDTTMNPEFRTLRQVAIDNGVEADRIFSMLMGDDVPPRREFIEKN 637 Query: 796 SLPSALDI 803 + + +D+ Sbjct: 638 AKYANIDV 645 >gi|237736253|ref|ZP_04566734.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817] gi|229421601|gb|EEO36648.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817] Length = 635 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 264/585 (45%), Positives = 383/585 (65%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y A+ I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY I V Sbjct: 2 SNNYQAEDITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D V DNGRGIP D+H + G SA E+++T LHAGGKF +YKVSGGLHGVGVS Sbjct: 61 SILPDNVIEVVDNGRGIPVDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W ++ +++ G ++ + GI + + G + GT V F +IF Sbjct: 121 VVNALSLWTEVEVRKNGKVWYQKYNRGIPEEAVKEIGITE-EHGTTVRFKADHEIFETLV 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++Y+TL++RL+EL++LN + I+L D R ++ ++GGI F+ + + L++ Sbjct: 180 YDYNTLKNRLKELAYLNKGLVITLTDSRKEPFKKEIFEFEGGIADFLREITEDTEKLIKE 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G DNI +++A + E + F NNI +GGTH+ G R+ALTR I + Sbjct: 240 PIYMTGEVDNIGVEIAFLYTVNQSEIIYSFVNNINTHEGGTHVQGFRTALTRIINDVGKA 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K + G D REG T+++S+K+P P+F QTK KL +SEV +V + V L Sbjct: 300 QGLLKDKDGKLQGTDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTVVGGQLKM 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 LE++P + K+I++K+L++ R+AA+RAR+L RK L++ SLPGKLADCS ++P++ E Sbjct: 360 ILEDNPNDTKVIIEKILNSKKAREAAQRARELVLRKSALEVGSLPGKLADCSSKNPEECE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A K L + E+ +ITA GTGIG Sbjct: 420 IYIVEGDSAGGSAKQGRDRYHQAILPLRGKILNVEKAGLHKALENNEVRAMITAFGTGIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D+F+I KLRY KII+MTDADVDGAHIRTLLLTF +R M LI+NG ++I +PPLY I+ Sbjct: 480 -DNFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVFIAQPPLYKISY 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 GK ++Y + L++ ++ G ++ L Sbjct: 539 GKQIKYAYSDRELKEITEAFEGEDKKYTLQRYKGLGEMNPEQLWE 583 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 101/265 (38%), Gaps = 7/265 (2%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + +I + K Sbjct: 374 KILNSKKAREAAQRARELVLRKSALEVGSLPGKLADCSSKNPEECEIYIVEGDSAGGSAK 433 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + + N E +++ + +++ Sbjct: 434 QGRDRYHQAIL--PLRGKILNVEKAGLHKALENNEVRAMITAFGTGIGDNFNIEKLRYGK 491 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + + I++ + L I G +IK Sbjct: 492 IILMTDADVDGAHIRTLLLTFIYRYMIELIYNGNVF-IAQPPLYKISYGKQIKYAYSDRE 550 Query: 723 LDTIFS--IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L I G K ++QRYKGLGEMN QLWETT++P R+LL+V I DA AD LF + Sbjct: 551 LKEITEAFEGEDKKYTLQRYKGLGEMNPEQLWETTMDPQNRTLLKVTIDDARAADMLFDK 610 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD+V+PRREFI+EN+ LDI Sbjct: 611 LMGDKVDPRREFIEENAEYVKNLDI 635 >gi|258647794|ref|ZP_05735263.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259] gi|260852245|gb|EEX72114.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259] Length = 653 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 277/601 (46%), Positives = 378/601 (62%), Gaps = 16/601 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++S+Y A +IQ+L+GL+AV+KRP+MYIGD GLHH++YE +DN+IDE+L GY Sbjct: 4 NQNKSSNYSASNIQVLEGLEAVRKRPAMYIGDISD-KGLHHLVYETVDNSIDEALAGYCT 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S V DNGRGIP D+H +E SA EV+MT LHAGGKF++ SYKVSGGLHG Sbjct: 63 HIEVTICTDNSIIVQDNGRGIPVDMHPKEHRSALEVVMTVLHAGGKFDKGSYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS + ++ R+G IY+ + G P+ V G GT+ F P +F Sbjct: 123 VGVSCVNALSKHMTSQVFRDGKIYQQEYEQGKPLYPVKVVGET-QLRGTKQQFWPDDTVF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYLDRH 239 + +NYDTL R+REL+FLN+ ++I+L D R E ++ + + G+ FV Y+D Sbjct: 182 TATIYNYDTLATRMRELAFLNAGLKITLTDLRPDEEGNTKQEEFYSEQGLREFVRYVDSS 241 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L I I ++ +I I++A+ +N Y ENV + NNI +GGTHL G R A+TR Sbjct: 242 RTHLFNDVIYISTNKADIPIEVAIMYNTSYSENVHSYVNNINTIEGGTHLIGFRQAITRV 301 Query: 300 ITSYVEK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + Y E+ + +K K + G+D REG T+V+S+K+ +P+F QTK +L ++EV V Sbjct: 302 LKKYAEQTAAKQIEKAKIEISGEDFREGLTAVISVKVAEPQFEGQTKTRLGNTEVTGAVN 361 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + LPGKLADC Sbjct: 362 QAVGEALTNYLEEHPKEAKLIVDKVILAATARIAARKARESVQRKNPMSGGGLPGKLADC 421 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +D ELFLVEGDSAGGSAKQ RSR QAILPLRGKILNVE+A + K S E+ + Sbjct: 422 SSKDAAVCELFLVEGDSAGGSAKQARSRTTQAILPLRGKILNVEKAMWHKAFESDEVNNI 481 Query: 478 ITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I ALG G +I KLRYHKIIIM DADVDG HI TL++T F+R MP +I +G+ Sbjct: 482 IQALGVRFGLDEDSKEANIEKLRYHKIIIMADADVDGQHIATLIMTLFYRYMPQIIEDGY 541 Query: 534 LYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLR 588 LYI PPLY +G + +Y +E + ++ S G ++ L Sbjct: 542 LYIAMPPLYRCRAKKGHAEEYCYNETARLRFIEQYGDGSEDNITTQRYKGLGEMNPEQLW 601 Query: 589 N 589 Sbjct: 602 E 602 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 40/73 (54%), Positives = 53/73 (72%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 I+ QRYKGLGEMN QLWETT+NP+TR L +V + A+ AD FS LMG++V PRR Sbjct: 580 SEDNITTQRYKGLGEMNPEQLWETTMNPETRLLKQVSLESATNADYTFSMLMGEDVGPRR 639 Query: 790 EFIQENSLPSALD 802 EFI++N+ + +D Sbjct: 640 EFIEKNATYANID 652 >gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis DSM 2160] gi|76558252|emb|CAI49840.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas pharaonis DSM 2160] Length = 639 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 302/592 (51%), Positives = 397/592 (67%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q+S Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DNAIDE+L GY Sbjct: 1 MS---QDSEYSAGQIQVLEGLEAVRKRPAMYIGSTD-TRGLHHLVYEVVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS TV D+GRGIP D H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDTIEVVINDDGSVTVRDDGRGIPVDTHEDHDRPAVEVIMTVLHAGGKFDSKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178 HGVGVSVVNALS WL++ IKR+G+++ F +G +N L TGTE+ F P Sbjct: 117 HGVGVSVVNALSKWLEVEIKRDGHVWHHRFDHGEPENGLEQVREMDPNESTGTEIRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 DIF DF + TL+ RLREL+FLN V I++ D+R EP T Y GGI FV+YL+ Sbjct: 177 DDIFETTDFTFSTLESRLRELAFLNPGVGITIRDERPEEPDASTFEYDGGIREFVAYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + L ++ I + D+I +++AM+ G ++ F NNI ++GGTHL+G ++ALTR Sbjct: 237 TRDVLHENIIYFEDEEDDIHVEVAMQATAGVQGSIHAFANNINTREGGTHLTGFKTALTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y + K ++ G+D REG T+V+SIK PDP+F QTK KL + EVR +VES Sbjct: 297 VINDYATSNGMLKDLDGNLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNGEVRGIVES 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L+ LEEHP A+ I+ K ++A+ R AA++A +LTRRK L+ SLPGKL+DC Sbjct: 357 AVHEELATHLEEHPDTAEAIISKAVEAAKARKAAKKAEELTRRKSALESTSLPGKLSDCQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP++SELF+VEGDSAGGSAKQGR+ E QAILPLRGKILNVE+ R D++L + EI LI Sbjct: 417 TRDPEESELFVVEGDSAGGSAKQGRNPEFQAILPLRGKILNVEKHRLDRILENNEIRNLI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+GTGIG++ FDI + RY KIII+ DADVDGAHIRTLLLTF +R M LI G++Y + Sbjct: 477 TAVGTGIGEE-FDIEEARYQKIIILCDADVDGAHIRTLLLTFLYRHMTPLIEAGYVYAAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 PPLY + G E + + S + G ++ L + Sbjct: 536 PPLYRVRDGGDTYDAMTEAERDRIVEEVCDGSPDQVQRFKGLGEMNPKQLWD 587 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 38/70 (54%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT+NP+ R L ++ I DA+ AD +FS LMGD VEPR++FI+E Sbjct: 570 QVQRFKGLGEMNPKQLWDTTMNPENRILKQITIEDAAAADRMFSVLMGDAVEPRKQFIKE 629 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 630 HADEAEWIDI 639 >gi|313886470|ref|ZP_07820186.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924016|gb|EFR34809.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 649 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 285/579 (49%), Positives = 382/579 (65%), Gaps = 10/579 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L GY Sbjct: 1 MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V + D S V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKVSGGL Sbjct: 60 CTEVLVEILSDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKGSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + R+G IY + G + V G A +DTGT +TF P Sbjct: 120 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKA-DDTGTRITFKPDDT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYL 236 IF ++ +TL HRLRELS+LN+ + + LID R + P+ + + G+ FV Y+ Sbjct: 179 IFRETIYSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWIFYSENGLSEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D K+ L+ I + + +++A+ +N Y ENV + N+I +GGTHL+G R L Sbjct: 239 DGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTHLTGFRRGL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y S K K + GDD REG T+++S+K+ +P+F QTK KL +SE+ VV Sbjct: 299 TRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSEIVGVV 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ V++ L +LEEHP EAK+IV KV+ A+ R AARRAR+L +RK L LPGKLAD Sbjct: 359 DAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP + ELF+VEGDSAGG+AKQGR + QAILPLRGKILNVE+A ++L + EI Sbjct: 419 CSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDNAEIKN 478 Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG +G + +KLRYHKIIIMTDADVDGAHI TL+LTFFFR M LI NG Sbjct: 479 IYTALGVTVGTEDDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRPLIENG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 ++YI PPLY + + +Y +E D++ +E Sbjct: 539 YVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQE 577 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 54/69 (78%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 I +QRYKGLGEMN QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+ Sbjct: 580 IKIQRYKGLGEMNDVQLWDTTMNPQTRTLRQVTIDNLASADSVFSMLMSEDVEPRREFIE 639 Query: 794 ENSLPSALD 802 EN+ + +D Sbjct: 640 ENATYANID 648 >gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192] gi|306533644|gb|ADN03178.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192] Length = 635 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 395/585 (67%), Gaps = 7/585 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A+ IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G I V + Sbjct: 2 SYTAEQIQVLKGLEPVRKRPGMYIGST-GEEGLHHLVYEVVDNSIDEALAGVCSRIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 TV+D+GRGIP DLH EE +SA E++MTRLHAGGKF++K+YKVSGGLHGVGVSVV Sbjct: 61 EPGNVVTVTDDGRGIPVDLHPEEKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS W ++ + R+G I+ + G+ P+ V G T F P ++IF +F+ Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETTEFS 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L RLREL+FLN ++I + D R+ +E Y+GG+ FV+YL++++ L + PI Sbjct: 180 FDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHVFKYEGGLREFVAYLNKNRTTLQKEPI 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 +G+RD++ ++ A+ +ND Y E F NNI K+GGTH+ G RSALTR + ++S Sbjct: 240 YFEGARDHVEVECAIEYNDSYSETFFSFVNNINTKEGGTHVVGFRSALTRCLNDLFKQSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 +KK ++ GDD REG T+VLSIK+P+P+F QTK KL +S+V+ +VESFV + L A Sbjct: 300 FAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESFVYEQLQAHF 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 HP + + I++KV+ A+ R AAR+AR+L RRK VL+ LPGKLADC E+DP + E+F Sbjct: 360 ARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIEKDPARCEIF 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAKQGR RE QAILPL GK+LNVE+ R +K+L++ ++ +I +LGTGIG Sbjct: 420 IVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIASLGTGIG-T 478 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI++LRYHK+IIM DADVDG+HIRTLLLTFF+R M L+ G +YI PPLY + Sbjct: 479 EFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPPLYKVWVKN 538 Query: 549 SLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589 ++Y +E + + E G ++ L Sbjct: 539 DVEYAYSDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWE 583 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 5/188 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + + S ++ V + Sbjct: 448 MLNVEKTRMEKVLTNDKLYPIIASLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK----GISM 736 F + + + + + + D + +K I++ Sbjct: 508 LTFFYRYMKELVERGHVYIAMPPLYKVWVKNDVEYAYSDEERDRILERFAKKYKKDEINV 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP TR+++++++ DA +A+++F+ LMGD+V PRR+FI+EN+ Sbjct: 568 QRYKGLGEMNPEQLWETTMNPATRNIIQIRVEDAVEAEEVFTTLMGDQVAPRRKFIEENA 627 Query: 797 LPS-ALDI 803 L LD+ Sbjct: 628 LFVTNLDV 635 >gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4] gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4] Length = 646 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 293/586 (50%), Positives = 399/586 (68%), Gaps = 6/586 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE++ G+ D I Sbjct: 13 EQQSYDESQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEAMAGHCDTIQ 71 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGLHGVG Sbjct: 72 VTIEEDNSITVEDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 131 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L++ + RE +Y + G+ L V G GT + F P +IF+ Sbjct: 132 SVVNALSTKLEVEVHRENQVYYQEYHRGVPAADLAVIGETE-KRGTIIRFKPDPEIFTET 190 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + YD L RLREL+FLN + I++ DKR Y+GGI +FV +L+R K+ L Sbjct: 191 TEYEYDILATRLRELAFLNKGLTITITDKREENKSSTYF-YEGGIASFVEHLNRSKEVLH 249 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI I+ +D +++++A+++NDGY N+ F NNI +GGTH SG ++ LTR I Y Sbjct: 250 DEPIHIEAEKDGLNVEVAVQYNDGYVSNIYSFANNISTHEGGTHESGFKTGLTRVINDYA 309 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K++ ++ G+D REG T+++S+K+PDP+F QTK KL +SE R+V +S ++ Sbjct: 310 RKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTVTDSLFSEAF 369 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S ++ EHP K IV+K L AS R+AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 370 SRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSKDATI 429 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+L++ EI +ITALGTG Sbjct: 430 SEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAIITALGTG 489 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RYHKIIIMTDADVDGAHIRTL+LTFF+R M LI G++YI +PPLY + Sbjct: 490 IG-DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEKGYIYIAQPPLYKV 548 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 T+G+ LQY +++ L+ + + ++ G ++ L Sbjct: 549 TQGRDLQYAYNDKELDQIMSQYTERNKVGIQRYKGLGEMNPTQLWE 594 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 35/354 (9%) Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI----- 536 G G + R H + D ++ G +R L ++P G Sbjct: 296 GFKTGLTRVINDYARKHNLFKENDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNS 355 Query: 537 -IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG--------VISKNDL 587 + + +++ + + ++ + L K + + L Sbjct: 356 EARTVTDSLFSEAFSRFMIEHPQVGKKIVEKGLMASRAREAAKKARELTRRKSALEVSSL 415 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + D D I + Y + A + ++ + + + RL+ I Sbjct: 416 PGKLADCSSKDATISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILA 475 Query: 648 KSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNR 696 +E G ++ DI R + + ++G+ I + F +Y R Sbjct: 476 NNEIRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPL--- 532 Query: 697 IEENYL----TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750 IE+ Y+ L + G ++ LD I S R + +QRYKGLGEMN +QL Sbjct: 533 IEKGYIYIAQPPLYKVTQGRDLQYAYNDKELDQIMSQYTERNKVGIQRYKGLGEMNPTQL 592 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT++P+ R++L+V + DA +AD++F LMGD VEPRR+FI EN+ LDI Sbjct: 593 WETTMDPEYRTVLQVTLEDAMKADEIFEILMGDRVEPRRDFIHENAQYVKNLDI 646 >gi|154491922|ref|ZP_02031548.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC 43184] gi|154088163|gb|EDN87208.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC 43184] Length = 651 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 287/602 (47%), Positives = 402/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ I+N+ Y ADSIQ+L+GL+AV+KRPSMYIGDT E GLHH++YEV+DN+IDE+L Sbjct: 1 MSEEIKNTSTEYSADSIQVLEGLEAVRKRPSMYIGDTS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ + V +N D S +V+D+GRGIP D+H++EG+SA EV++T LHAGGKF++ SYKVSG Sbjct: 60 GFCTQVDVVINEDNSISVTDDGRGIPVDIHEKEGVSALEVVLTVLHAGGKFDKGSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++L+ ++R+G ++ F G + + V G + TGT + F P Sbjct: 120 GLHGVGVSCVNALSTYLRAEVRRDGKVHMQEFSCGKPLHSIEVIGET-DVTGTTIMFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IFSV ++ Y+ L RLREL+FLN+ + +SL DKR + + + G++ FV Sbjct: 179 GSIFSVTEYKYEILAARLRELAFLNAGITLSLTDKRVVKEDGSYKSEIFRSEEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DR K+ L+ I I + I +++AM +N ++E+V + N+I +GGTHL+G R Sbjct: 239 YIDRSKEQLIPDVIHIVTEKQGIPVEVAMTYNTSFNESVFSYVNDINTIEGGTHLAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y + S +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKKYADDSKLLEKAKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNNEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ + + L +LEEHP EAKIIV KV+ A+ R AAR+AR+L +RK + LPGKL Sbjct: 359 AVDQAIGEALGYYLEEHPKEAKIIVDKVILAAQARQAARKARELVQRKSPMTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D ELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ S+EI Sbjct: 419 ADCSSKDAALCELFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMDHKVFESEEI 478 Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + A+G IG + KLRYHK+IIMTDADVDG+HI TL+LTFFFR+M +LI Sbjct: 479 QNIFRAMGVTIGTEEDPKELNLSKLRYHKVIIMTDADVDGSHIATLILTFFFRRMRALIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 NG++Y+ PPLY +GK +Y ++ + ++ E ++ G ++ + L Sbjct: 539 NGYVYLATPPLYLCKKGKVEEYCWTDQQRQAFIDKYGGGNENQIHTQRYKGLGEMNDHQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 152 bits (384), Expect = 3e-34, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 53/66 (80%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLW+TT+NP+ R+L ++ I A++AD +F+ LMG++V PRREFI+EN+ Sbjct: 585 QRYKGLGEMNDHQLWDTTMNPENRTLKQITIDSAAEADQIFAMLMGEDVGPRREFIEENA 644 Query: 797 LPSALD 802 + +D Sbjct: 645 TYANID 650 >gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A] gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A] Length = 635 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 293/600 (48%), Positives = 399/600 (66%), Gaps = 6/600 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD Sbjct: 3 NNNNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADE 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 IT+ + V+DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGV Sbjct: 62 ITIEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVN LS W + I ++G IYE + GI L V GS + +GT ++F IF+ Sbjct: 122 GASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFT 180 Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL+ R+++L+FLN ++++LID R E + + Y+GGI +V +L++ K Sbjct: 181 ETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSK 240 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I I +D I+++LAM++ D Y N+ FTNNI +GG H G + ALTR I+ Sbjct: 241 IHNDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISK 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S+ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ Sbjct: 301 YADDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + +L E+P +AK IV+KVL A+ R AAR+A+DLTRRK LD KLADC +DP Sbjct: 359 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +KSE+++VEGDSAGGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+G Sbjct: 419 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY Sbjct: 479 TGI-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I+ G++ QY +E+ L + L I+ + + ++ +D A + IK Sbjct: 538 KISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 597 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + V ++G+ I + + R I+ Y L Sbjct: 479 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 538 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I G + L+ + S+QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 539 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 598 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +AD +FS LMG+EVEPR+EFIQ N+ + DI Sbjct: 599 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 633 >gi|306821823|ref|ZP_07455415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550130|gb|EFM38129.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 649 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 290/646 (44%), Positives = 406/646 (62%), Gaps = 10/646 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + NS Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNAIDE+L G+ Sbjct: 10 MEEKV-NSEYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAIDEALAGF 67 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V+++++ TV D+GRGIP ++H + G S E ++T LHAGGKF YKVSGGL Sbjct: 68 CKNIYVSIDVNNGITVIDDGRGIPVEVHPKTGKSTLETVLTVLHAGGKFGAGGYKVSGGL 127 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179 HGVGVSVVNALS L +K++G IY+ F G + + V G + GT ++FLP Sbjct: 128 HGVGVSVVNALSKSLTAVVKKDGKIYKQEFEKGNPVSDVHVVGDCPMEERGTCISFLPDE 187 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +F ++++ L+HRLREL+FLN + I+L D R+ E Y+GGI +V L+++ Sbjct: 188 TVFEETVYSFEVLEHRLRELAFLNKGISITLEDNRTIEKVTRKYHYEGGIIEYVKALNKN 247 Query: 240 KKPLMQSPIRIQ-GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + + + I++AM++ D Y EN+ F NNI +GG HL G +SALTR Sbjct: 248 REALTEVIYFNKLDEEFSYDIEIAMQYTDAYVENIYSFANNINTVEGGMHLIGFKSALTR 307 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y K+ K+ + G+D REG T+++S+K+P+P++ QTK KL + ++RS VE Sbjct: 308 VVNDYARKNNMLKEKDENFTGEDIREGLTAIISVKLPEPQYEGQTKTKLGNPQMRSSVEQ 367 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 D ++ +LEE+P A+II++K + + R AA+RARDLTRRKG+L+ SLPGKLADC Sbjct: 368 ITVDQVATFLEENPATARIIMEKCMRSQRARQAAKRARDLTRRKGILESTSLPGKLADCR 427 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP KSE+F+VEGDSAGGSAK+GR+ +NQAILPLRGKILNVE+AR DK L S I +I Sbjct: 428 EKDPSKSEIFIVEGDSAGGSAKEGRNSQNQAILPLRGKILNVEKARLDKALQSDTIKNMI 487 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA G GIG + FD +KLRYHKIIIM+DADVDGAHIRTL+LTFFFR M LI G++YI + Sbjct: 488 TAFGCGIGSE-FDDSKLRYHKIIIMSDADVDGAHIRTLILTFFFRYMRPLIEKGYVYIAQ 546 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ I +GK Y E LE L + G + +L + +D Sbjct: 547 PPLFSIEKGKKTYYAYSPEELEAKLNEIGRERTVVSRNKGLGEMDAEELGDT-----TMD 601 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + I I + + + + N Sbjct: 602 PAKRVLLKVNLEDAIAADEIFDILMGDKVEPRREFIQKNAKYVENL 647 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + N + + S ++ V + Sbjct: 466 ILNVEKARLDKALQSDTIKNMITAFGCGIGSEFDDSKLRYHKIIIMSDADVDGAHIRTLI 525 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + S+ P L + IGR+ + R K Sbjct: 526 LTFFFRYMRPLIEKGYVYIAQPPLFSIEKGKKTYYAYSPEELEAKLNEIGRERTVVSRNK 585 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEM+A +L +TT++P R LL+V + DA AD++F LMGD+VEPRREFIQ+N+ Sbjct: 586 GLGEMDAEELGDTTMDPAKRVLLKVNLEDAIAADEIFDILMGDKVEPRREFIQKNAKYVE 645 Query: 800 ALDI 803 LDI Sbjct: 646 NLDI 649 >gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 648 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 285/598 (47%), Positives = 401/598 (67%), Gaps = 6/598 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY AD IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G+ Sbjct: 12 MENIKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAGF 70 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I + + D V DNGRG+PT + ++ GIS E I T LHAGGKF +YKVSGGL Sbjct: 71 ATDIDIAIEKDNIIRVEDNGRGMPTGIVEKSGISGVETIFTILHAGGKFGGGAYKVSGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + + GNIY M F N G L + G + G+ V F Sbjct: 131 HGVGASVVNALSEWLEVTVYQNGNIYFMRFENGGKAVESLKIIGKT-DKHGSMVRFKADP 189 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ ++++TL R+R+L+FLN S+++ L D+R E +EI Y GGI +V YL++ Sbjct: 190 TIFTETQVYDFETLNTRIRQLAFLNKSIKLILTDEREEERKEIVYKYDGGIRQYVEYLNQ 249 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K PL + + ++G D I ++A+++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 250 NKSPLHEEVVYVEGIEDGILAEIALQYNDGYVPNIYSFCNNINTAEGGTHEDGFRLALTR 309 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y ++ K ++ GDD REG T+++S+K PDP++ QTK KL +SEVR +V S Sbjct: 310 IVNAYARENGMIK-KDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSS 368 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + L + E+P AKII+ K + AS R AA++AR+LTRRK L+I+SLPGKLADCS Sbjct: 369 ILGEQLEKFFLENPDTAKIIIDKCILASKARMAAKKARELTRRKSALEISSLPGKLADCS 428 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RD + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR ++ + EI ++I Sbjct: 429 SRDASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLHRIFENNEIRSMI 488 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA G GIG++ DI+KLRYHKIIIMTDADVDGAHI TL+LTFF+R + +I G++YI Sbjct: 489 TAFGCGIGEEM-DISKLRYHKIIIMTDADVDGAHICTLMLTFFYRFLRPIIEGGYVYIAM 547 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPL+ I +G+ ++YV DE S + + + I+ + + + +D A + Sbjct: 548 PPLFKIQKGQRIEYVYDESSRDRVIAEMGENVSIQRYKGLGEMNPEQLWETTMDPAFR 605 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 49/101 (48%), Positives = 67/101 (66%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L I G +I+ S D + + + +S+QRYKGLGEMN QLWETT++P R+L Sbjct: 548 PPLFKIQKGQRIEYVYDESSRDRVIAEMGENVSIQRYKGLGEMNPEQLWETTMDPAFRTL 607 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +V I DA +AD +F LMG+EV PRREFIQEN++ + LD+ Sbjct: 608 KKVNINDAMEADKVFEMLMGEEVGPRREFIQENAVYAELDV 648 >gi|163786113|ref|ZP_02180561.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1] gi|159877973|gb|EDP72029.1| DNA gyrase subunit B [Flavobacteriales bacterium ALC-1] Length = 649 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 285/614 (46%), Positives = 397/614 (64%), Gaps = 14/614 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L Sbjct: 1 MSEKKESFNEHGYSADSIQALEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+ D ITVT+N D S T D+GRGIP LHK+EG+SA EV+MT++ AGGKF++ SYKVS Sbjct: 60 AGHCDNITVTINEDNSITTEDDGRGIPVGLHKKEGVSALEVVMTKIGAGGKFDKDSYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVS VNALS LK + REG +YE + G P+ TG + GT VTF P Sbjct: 120 GGLHGVGVSCVNALSEHLKATVFREGKVYEQEYERGKAMYPVKTTGDT-DKRGTTVTFKP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAF 232 S IF+ ++NYDTL RLREL++LN + + LIDKR + T K G++ F Sbjct: 179 DSTIFTQTLEYNYDTLASRLRELAYLNKGITVHLIDKRHTKEDGSFEGETFHSKEGLKEF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 + +LD + PLM+ I +G ++ + +++AM +N Y EN+ + NNI +GGTHLSG Sbjct: 239 IKFLDATRDPLMKDVIAFEGEKNGVPVEVAMIYNTSYAENLHSYVNNINTHEGGTHLSGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R LT + + + S K K V GDD REG T+++S+K+ +P+F QTK KL + EV Sbjct: 299 RRGLTHTLKKFADSSGMLDKLKFDVAGDDFREGLTAIISVKVQEPQFEGQTKTKLGNREV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + V V++ L+ +LEEHP +AK IV+KV+ A+ R AA++AR++ +RK V+ I LPG Sbjct: 359 SASVSQAVSEMLTDYLEEHPDDAKTIVQKVILAAQARHAAQKAREMVQRKTVMSIGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL+DCSE++P+ E++LVEGDSAGG+AK GR R QAILPLRGKILNVE+A K+ ++ Sbjct: 419 KLSDCSEQNPEICEIYLVEGDSAGGTAKMGRDRAFQAILPLRGKILNVEKAMTHKVFENE 478 Query: 473 EIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG IG + +KLRYHKI+IM DAD+DG+HI TL+LTFFFR M L Sbjct: 479 EIKNIFTALGVTIGTEEDSKALNLSKLRYHKIVIMCDADIDGSHIETLILTFFFRYMKEL 538 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 I NG +YI PPLY + +G Y +++ + +I+ + + + Sbjct: 539 IENGHIYIATPPLYLVKKGAKKAYAWNDDERMALMDQYGDGAKIQRYKGLGEMNAIQLWD 598 Query: 589 NFIDDALKIDKLIK 602 ++ + + I+ Sbjct: 599 TTMNPEFRTLRQIQ 612 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + S + Sbjct: 457 LPLRGKILNVEKAMTHKVFENEEIKNIFTALGVTIG------TEEDSKALNLSKLRYHKI 510 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V + + F F + I + I L L+ G K Sbjct: 511 VIMCDADIDGSHIETLILTFFFRYMKELIENGHIY-IATPPLYLVKKGAKKAYAWNDDER 569 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + G +QRYKGLGEMNA QLW+TT+NP+ R+L +++I + +AD +FS LMGD Sbjct: 570 MALMDQYGDGAKIQRYKGLGEMNAIQLWDTTMNPEFRTLRQIQIDNGVEADRVFSMLMGD 629 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N++ + +D Sbjct: 630 EVPPRREFIEKNAVYANID 648 >gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61] gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61] Length = 640 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 301/592 (50%), Positives = 406/592 (68%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+ D S TV+DNGRGIP D+H+ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCTNIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS WL++ + R+G I+ + G L V G + TGT F P Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ F+Y+TL RLREL+FLN ++I+L D+R + Y+GGI ++V +L+R Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I G RD I++++A+++NDGY N+ F NNI +GGTH SG + ALTR Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K++ ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ Sbjct: 298 IINDYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 358 VFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +I Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI +G++YI + Sbjct: 478 TALGTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +GK ++Y ++ LE L + G ++ L Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 588 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 41/334 (12%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548 DA++ G +R L + PS G ++ + + + Sbjct: 313 DANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPT 372 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 + + ++ + + S IS +L + D D I + Y Sbjct: 373 IARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSRDPSISELYVVE 430 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662 + A + ++ + + + RL+ I +E G DI Sbjct: 431 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDI 490 Query: 663 LVKRIAR-GVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYL----TILSLICNGDKIKI 716 R + + ++G+ I + + R IE Y+ L I G +++ Sbjct: 491 SKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRY 550 Query: 717 TGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 L+ I + + ++QRYKGLGEMN QLWETT+NP+TR+LL+V + DA Sbjct: 551 AYNDRQLEKILAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDA 606 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+ F LMGD+VEPRR+FI+EN+ LDI Sbjct: 607 IDADETFEILMGDKVEPRRQFIEENARYVKNLDI 640 >gi|260062006|ref|YP_003195086.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501] gi|88783568|gb|EAR14739.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501] Length = 648 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 286/599 (47%), Positives = 397/599 (66%), Gaps = 12/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++ SY ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSEEVKGKSYSADSIQALEGIEHVRMRPSMYIGDI-GVRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+VT+N D S TV DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTISVTINEDNSITVEDNGRGIPVDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS LK + REG I+E + G P+ TG + GT VTF P + Sbjct: 120 HGVGVSVVNALSKHLKATVYREGKIWEQEYERGRTLYPVKSTG-TSDLNGTIVTFHPDPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236 IF F+YDTL +R+REL++LN V I++ D K E + + G++ F+ +L Sbjct: 179 IFQQTIEFSYDTLSNRMRELAYLNKGVAITITDRRVKEKGEYLSERFYSEEGLKEFIRFL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D +++PL+ I ++G +++I +++AM +N Y EN+ + NNI +GGTHLSG R L Sbjct: 239 DGNREPLIADVISMEGEKNDIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRGL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T + Y + S K K V GDD REG T+++S+K+ +P+F QTK KL + EV + V Sbjct: 299 TTTLKKYADASGMLDKLKFEVAGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSAAV 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V++ L+ +LEEHP +AK +V+KV+ A+ R AA +AR++ +RK + LPGKLAD Sbjct: 359 SQAVSEMLTNYLEEHPDDAKTVVQKVILAAQARHAAAKAREMVQRKNPMSGGGLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS++DP++ E+FLVEGDSAGG+AK GR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 CSDQDPERCEIFLVEGDSAGGTAKMGRDRNTQAILPLRGKILNVEKAMQHKVFENEEIKN 478 Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG IG + +KLRYHK+IIM DADVDG+HI TL+LTFFFR M LI G Sbjct: 479 IYTALGVTIGTEEDSKALNLDKLRYHKVIIMCDADVDGSHIETLILTFFFRYMRELIEGG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589 +YI PPLY + +G +Y +++ + + S S G ++ L + Sbjct: 539 HVYIATPPLYLVKKGSKKRYAWNDKERDAIVEELSTSSGSPGIQRYKGLGEMNAEQLWD 597 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 14/205 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + + Sbjct: 453 LPLRGKILNVEKAMQHKVFENEEIKNIYTALGVTIG------TEEDSKALNLDKLRYHKV 506 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F F + I + L L+ G K + Sbjct: 507 IIMCDADVDGSHIETLILTFFFRYMRELIEGGHVY-IATPPLYLVKKGSKKRYAWNDKER 565 Query: 724 DTIFSI-----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 D I G G +QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A+++D +FS Sbjct: 566 DAIVEELSTSSGSPG--IQRYKGLGEMNAEQLWDTTMNPEFRTLRQVTIDNATESDRIFS 623 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 LMGDEV PRREFI+ N++ + +D+ Sbjct: 624 MLMGDEVPPRREFIERNAVYANIDV 648 >gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP-6] gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP-6] Length = 630 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 290/644 (45%), Positives = 417/644 (64%), Gaps = 16/644 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ YDA IQ+L+GL+AV++RPSMYIG TD GLHH++YEV+DN++DE+L G+ Sbjct: 1 MSEAT---GYDASHIQVLEGLEAVRRRPSMYIGSTDSL-GLHHLVYEVVDNSVDEALGGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N GS ++ D+GRGIP D H + A E+++T LHAGGKF+ +SY VSGGL Sbjct: 57 CSEIDVTINPGGSVSIRDDGRGIPVDNHPQFNRPALEIVLTVLHAGGKFDHESYGVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W++++++R G IY F G + + L G + + TGT +TF P + Sbjct: 117 HGVGVSVVNALSEWMEVQVRRNGRIYWQRFEKGKVVSDLEERG-SSDHTGTTITFKPDTS 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F++DTL RLREL+FLN ++I++ D RS + Y GGI +FV YL+++K Sbjct: 176 IFEETEFSFDTLSSRLRELAFLNRGLKITIKDDRSDKEN--IFQYAGGIISFVEYLNKNK 233 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L + P+ S++ +++A+++N+ Y EN+ + N I ++GGTHL G R+ALTR + Sbjct: 234 EVLHEQPVYFSRSKNGTQVEVALQYNNSYAENIFSYANIINTREGGTHLMGFRAALTRTV 293 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K++ + G+D REG +V+S+K+PDP+F QTK +L +S +R +VES V Sbjct: 294 NDYARNNK-LFKNEMKLGGEDLREGLVAVISVKLPDPQFEGQTKTRLGNSSIRGIVESMV 352 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GL + EE+PL A IV+K +A R+AAR+A++LTRRK L LPGKLADCS+ Sbjct: 353 AEGLGEYFEENPLVATTIVEKAAEAMRAREAARKAKELTRRKNALSSGGLPGKLADCSDN 412 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K E+++VEG+SAGGSAKQGR+R QAILPLRGKILNVERAR DK+L + EI +I A Sbjct: 413 DPAKCEIYIVEGESAGGSAKQGRNRHFQAILPLRGKILNVERARLDKILKNAEIRNMIVA 472 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTG+G D FDI+K RYHK++IMTDADVDG+HIRTLLLTFF+R M LI G+++I +PP Sbjct: 473 FGTGVG-DDFDISKARYHKVVIMTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVFIAQPP 531 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y +E L + + +++ + G ++ L +D Sbjct: 532 LYQVKKGKQANYAYSDEQLNE--LVAGMNKPVIQRYKGLGEMNPEQLWET-----TMDPE 584 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + +E I + + + + N Sbjct: 585 GRIMLRVTLEDAVEADRIFTILMGDQVEPRREFIEKHAKYVKNL 628 Score = 180 bits (457), Expect = 9e-43, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 11/202 (5%) Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 H + + + + N E + + +++ N + + S +V Sbjct: 436 NRHFQAIL--PLRGKILNVERARLDKILKNAEIRNMIVAFGTGVGDDFDISKARYHKVVI 493 Query: 666 RIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT 725 V + F + I + + L + G + L+ Sbjct: 494 MTDADVDGSHIRTLLLTFFYRYMRPLIDAGYVF-IAQPPLYQVKKGKQANYAYSDEQLNE 552 Query: 726 IFSIGRKGIS---MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + + G++ +QRYKGLGEMN QLWETT++P+ R +LRV + DA +AD +F+ LMG Sbjct: 553 LVA----GMNKPVIQRYKGLGEMNPEQLWETTMDPEGRIMLRVTLEDAVEADRIFTILMG 608 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+VEPRREFI++++ LDI Sbjct: 609 DQVEPRREFIEKHAKYVKNLDI 630 >gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574] gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574] Length = 636 Score = 608 bits (1569), Expect = e-171, Method: Composition-based stats. Identities = 308/586 (52%), Positives = 406/586 (69%), Gaps = 3/586 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Q + Y AD IQ+L+GL+AV++RP MYIG T GLHH++YEV+DN+IDE+L G+ + Sbjct: 2 DQQINKYSADQIQVLEGLEAVRRRPGMYIGSTSS-RGLHHLVYEVVDNSIDEALAGFCNR 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I+V ++ D S TV DNGRGIP DLH + G A EV++T LHAGGKF YKVSGGLHGV Sbjct: 61 ISVVIHKDNSVTVEDNGRGIPVDLHPKVGKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS L++ IKR GNIY ++ G+ + L + G + TGT+VTF P +IF Sbjct: 121 GVSVVNALSEKLEVEIKRNGNIYHQAYSRGVPVSELKIIGKSK-STGTKVTFKPDPEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ +TL RLREL++LN V+I++ D+R P E T + GGI FV +L+R+K+ L Sbjct: 180 ETTFSLETLVQRLRELAYLNKGVKITIKDERKDPPVEQTFQFDGGIRDFVKHLNRNKQVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI + G ++ I +++A+++ND Y+EN+L F NNI DGGTH G ++ALTR + Y Sbjct: 240 HSKPIYVTGEKEQIIVEIALQYNDTYNENILSFANNIHTVDGGTHEIGFKTALTRVVNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K ++ G+D REG T V+S+K+ +P+F QTK KL +SEVR +V+S DG Sbjct: 300 GRNHNLLKNSDPNLSGEDIREGATVVISVKVREPQFEGQTKTKLGNSEVRGIVDSIFADG 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +LEE+P K I++K + A+ R+AAR+AR+LTRRK LD SLPGKLADCSE+DP Sbjct: 360 LATYLEENPTVGKRIIEKAITAARAREAARKARELTRRKSALDTMSLPGKLADCSEKDPS 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI +ITALG Sbjct: 420 VSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITALGC 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FDI+K RYHKIIIMTDADVDGAHIRTLLLTFF+R M LI G++YI +PPL+ Sbjct: 480 GIG-QDFDISKARYHKIIIMTDADVDGAHIRTLLLTFFYRHMRPLIEAGYVYIAQPPLFR 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +GK YV + LE+ L G ++ L Sbjct: 539 VRKGKLDSYVYSDHELEELLKRVGYDNVNIQRYKGLGEMNPEQLWE 584 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + S ++ V + Sbjct: 453 ILNVEKARMDKILANEEIRAMITALGCGIGQDFDISKARYHKIIIMTDADVDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + + L + + +G +++QRYK Sbjct: 513 LTFFYRHMRPLIEAGYVYIAQPPLFRVRKGKLDSYVYSDHELEELLKRVGYDNVNIQRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++PDTR++L+V + DA +AD FS LMGD VEPRR+FIQEN+ Sbjct: 573 GLGEMNPEQLWETTMDPDTRTVLQVTLEDAIEADATFSMLMGDRVEPRRDFIQENAQYVR 632 Query: 800 ALDI 803 LDI Sbjct: 633 NLDI 636 >gi|150020566|ref|YP_001305920.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429] gi|149793087|gb|ABR30535.1| DNA gyrase, B subunit [Thermosipho melanesiensis BI429] Length = 627 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 273/582 (46%), Positives = 380/582 (65%), Gaps = 9/582 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y+A +I++LKGL+ V++RP MYIG T G++GLHH++YE++DN++DE+L+GY D I VT+ Sbjct: 2 DYNAQNIKVLKGLEPVRQRPGMYIGST-GKAGLHHLVYEIVDNSVDEALQGYCDKIYVTI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DGS + DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG SVV Sbjct: 61 FKDGSVEIKDNGRGIPVDIHPETGKSALEVVMTTLHAGGKFSKDSYKVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS WL++ + R+G IY + G + + G + GT V F P ++IFS +F+ Sbjct: 121 NALSEWLEVEVHRDGKIYYQKYQRGTPLTEVRIIGET-DYRGTIVRFKPDTEIFSTVEFD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 DT+ RLREL+FLN ++ + D+R E E T + GG++ FV +L + + L PI Sbjct: 180 SDTILIRLRELAFLNPNITVVFKDER--ENIEKTFHFTGGLKEFVVHLSKGTRSLH-EPI 236 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + G ++I +D+ ++ E + F NNI DGGTH++G ++A TR + +K+ Sbjct: 237 LVSGEYNSIKVDVCFQYTASDFEKIYSFVNNIRTVDGGTHVTGFKTAFTRVVNELGKKTG 296 Query: 309 GSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++ G+D REG +++S+ P F QTK KL + EV+ V V + L + Sbjct: 297 QL--KKDTLRGEDIREGIVAIVSVLMSKTPEFEGQTKSKLGNEEVQEAVAKVVREKLLEY 354 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 E + KII++K L+A R+AA+ AR++ +RK V +SLPGKLADC + ++SEL Sbjct: 355 FESNENTLKIIIQKALEAKKAREAAKHAREMIKRKSVFGSSSLPGKLADCITKKMEESEL 414 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQ R R QAILPLRGKILNVE++ + K+L +++I +ITALGTGIG Sbjct: 415 FIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSWLKLLKNEQIRDIITALGTGIG- 473 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI+KLRY KIIIMTDADVDGAHIRTLLLT F+R M LI G +YI +PPLY + Sbjct: 474 DDFDISKLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMKELIDEGRIYIAQPPLYKVNVN 533 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K + Y +E LE++ N + G ++ L Sbjct: 534 KKIYYFYSDEELEEFKENLKDKKFEIQRYKGLGEMNPQQLWE 575 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + S ++ V + Sbjct: 444 ILNVEKSSWLKLLKNEQIRDIITALGTGIGDDFDISKLRYGKIIIMTDADVDGAHIRTLL 503 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + + I RI + + N L + ++ K +QRYK Sbjct: 504 LTLFYRYMKELIDEGRIYIAQPPLYKVNVNKKIYYFYSDEELEEFKENLKDKKFEIQRYK 563 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++P+ R LL+V+I DA +AD+LF LMG + E R+EFI ++L Sbjct: 564 GLGEMNPQQLWETTMDPEKRKLLKVEIEDAEEADELFEMLMGSDTESRKEFIFRHALQVK 623 Query: 800 ALDI 803 +DI Sbjct: 624 EIDI 627 >gi|325846392|ref|ZP_08169361.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481576|gb|EGC84616.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 634 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 281/585 (48%), Positives = 404/585 (69%), Gaps = 5/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N+ Y+A +I++LKGL+ V+ RP MYIG T E GLHH++YEV+DN++DE+L G D I Sbjct: 1 MDNTQYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++++ + TV D+G GIP + H + G S E ++T LHAGGKF+ K+YKVSGGLHGVG Sbjct: 60 KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L +KREG+IY M+F G + L + G +TGT+++F +IF V Sbjct: 120 VSVVNALSEYLIAEVKREGHIYRMTFERGKPTSDLEIIGDTK-ETGTKISFKADPEIFDV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +N +TL++R RE++FLN V+ LI + + E+ Y GGI+ FV YL+R+K P+ Sbjct: 179 TVYNKNTLENRFREMAFLNKGVR--LIFEDKRDESEVEFKYDGGIKEFVKYLNRNKTPIF 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +++ ++++ ++ DGY EN+L F NNI +GGTHLSG RSALTR + Y Sbjct: 237 KEIPYFEGRQESTEVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRSVNDYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ GDD REG T+++S+K+ +P+F QTK KL +SEVR V++F ++ + Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 ++LEE+P AK I++K L + R+AAR+ARDLTR++ +LD +LPGKLADC +D + Sbjct: 357 GSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+ +EI ++ITA GTG Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG FD++KLRY KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 477 IG-QEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + GK +Y ++ LED + + G ++ L Sbjct: 536 SSGKKERYCYTDKELEDIVKEWKVDNYKISRYKGLGEMNAEQLWE 580 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 14/203 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N E + + + + + + + K + Sbjct: 443 LPLRGKIMNVEKANLDRILNYEEIKSMITAFGTGIGQEFDLSKLRYGK-----------I 491 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + + I + + + L Sbjct: 492 IIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKISSGKKERYCYTDKELE 551 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLM 781 D + + RYKGLGEMNA QLWETT++P+ R LL+V K D FS LM Sbjct: 552 DIVKEWKVDNYKISRYKGLGEMNAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLM 611 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G++VEPRREFI+EN+ LD+ Sbjct: 612 GEKVEPRREFIEENAQYVENLDV 634 >gi|295106380|emb|CBL03923.1| DNA gyrase subunit B [Gordonibacter pamelaeae 7-10-1-b] Length = 656 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 298/654 (45%), Positives = 403/654 (61%), Gaps = 26/654 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + YD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DNA+DE+L GY Sbjct: 1 MSVANKPDHYDGSDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV DNGRGIP D H +E I EV++T LHAGGKF + YKVSGGL Sbjct: 60 CDTIEVWIHPDNSITVDDNGRGIPVDKHPKEKIPTVEVVLTILHAGGKFGGEGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS +++ + +EG Y++SF +G L G GT VTF P Sbjct: 120 HGVGVSVVNALSSRVEVSVFKEGVQYDISFDHGKTAEKLREVGKVRRGNGTTVTFWPDPT 179 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----------PEPREITMFYKGGI 229 IF+ ++YDTL R RE++FLN ++I L D+R PEPR Y GGI Sbjct: 180 IFTDTTVYDYDTLASRFREMAFLNKGLKIILHDERVNPGSTLSDLAPEPRTEVFQYAGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN-VLCFTNNIPQKDGGTH 288 FV +L+ K+ L PI + D+ ++++AM+W+ Y N V+ F NNI +GGTH Sbjct: 240 VDFVKFLNEGKETLN-KPIYFEAENDDGTVEVAMQWSSSYSTNSVMAFANNINTHEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 L G + A+TR I Y K+ ++ GDD REG +++S+K+ DP+F QTK KL Sbjct: 299 LDGFKQAVTRTINEYARAKGILKEKDSNLSGDDTREGCAAIISVKLHDPQFEGQTKTKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++E+R +V++ V GL+ +LEE+P AK I+ K A R+AAR+AR++TRRKGVLD Sbjct: 359 NTEIRPLVQNAVTQGLAEYLEENPKPAKRIIDKATQALKAREAARKAREMTRRKGVLDSF 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS + P SE+F+VEGDSAGGSAKQ R R+ QAILPLRGKILNVERA + Sbjct: 419 ALPGKLADCSSKTPADSEIFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVERAGLHRS 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 LSS I +LITA+GT IG D FD ++ RYH+IIIMTDADVDGAHIR LLLTFF+R MP L Sbjct: 479 LSSDTISSLITAIGTNIG-DDFDADQARYHRIIIMTDADVDGAHIRCLLLTFFYRYMPEL 537 Query: 529 IHNGFLYIIKPPLYGITRGKS-----LQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVI 582 I+ G++YI +PP++G+ + S +Y+ DE +L L + + G + Sbjct: 538 INRGYIYIAQPPIFGLKKKNSRSPKIERYIYDESALGSVLAEYDNPDKFDVQRYKGLGEM 597 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + L ++ + + E + + + + Sbjct: 598 DPDQLWET-----TMEPETRTLLQVNIDDAAEAERVVSELMGDQVEPRKEFIQK 646 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+ P+TR+LL+V I DA++A+ + S LMGD+VEPR+EFIQ++ Sbjct: 588 VQRYKGLGEMDPDQLWETTMEPETRTLLQVNIDDAAEAERVVSELMGDQVEPRKEFIQKH 647 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 648 ARDVRFLDI 656 >gi|55377342|ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049] gi|55230067|gb|AAV45486.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049] Length = 642 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 293/591 (49%), Positives = 393/591 (66%), Gaps = 11/591 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ Y A SIQ L+GL+AV+KRP+MYIG TD GLHH++YEV+DNAIDE+L GY D I Sbjct: 4 ESDEYGAKSIQTLEGLEAVQKRPAMYIGSTDA-RGLHHLVYEVVDNAIDEALAGYCDNID 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ DGS +VSD+GRGIP D H+E G A EV+MT LHAGGKF+ KSY+VSGGLHGVGV Sbjct: 63 VTIHDDGSVSVSDDGRGIPVDTHEEHGRPAVEVVMTILHAGGKFDNKSYQVSGGLHGVGV 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ ++R+G +++ F +G + L +TGT V F P +IF Sbjct: 123 SVVNALSKWLEVEVRRDGALWKQRFDHGKPEYDLKKVRDLKPDEETGTTVRFWPDDEIFE 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F + TL RLREL+FLNS V IS+ D+R E T Y GGI FV YL+ K PL Sbjct: 183 TGEFKFSTLSSRLRELAFLNSGVAISIDDERDGET--ETFAYDGGIREFVEYLNETKDPL 240 Query: 244 MQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + I + + + +++AM+ D ++ F NNI ++GGTHL+G +++LTR Sbjct: 241 HRDIIYFEDEEEIAEGPVQVEIAMQGTDDLQGSIHAFANNINTREGGTHLTGFKTSLTRV 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K ++ GDD REG T+V+S+K PDP+F QTK KL +SEVR +VES Sbjct: 301 INDYATDNNLLKDLDDTLKGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESA 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++DGL+ + EE+P A+ IV K ++A+ R AA++A +LTRRK LD +LPGKLADC Sbjct: 361 MHDGLATFFEENPDTAEAIVGKAVEAAKARKAAQKAEELTRRKSALDSTALPGKLADCQT 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+++ELF+ EGDSAGGSAKQGR+ + QAILP++GKILNVE+ R D++L + EI LIT Sbjct: 421 RDPEEAELFIAEGDSAGGSAKQGRNPDFQAILPIKGKILNVEKHRLDRILENNEIRNLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D FDI LRY KII+MTDADVDGAHIRTLLLT F+R M L+ G++Y +P Sbjct: 481 ALGTGIG-DEFDIEDLRYEKIILMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYVYASQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 PLY I + + + + + + G ++ L Sbjct: 540 PLYRIRYRGNTYDAMTDAERDQIIEEKCDGNPTHVQRFKGLGEMNPEQLWE 590 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN QLWETT+NPD R L ++ I DA+ AD +F+ LMGD VEPR+EFI+E+ Sbjct: 574 VQRFKGLGEMNPEQLWETTMNPDNRILKQITIEDAAAADKMFNILMGDAVEPRKEFIKEH 633 Query: 796 SLPSA-LDI 803 S + +DI Sbjct: 634 SPEAEWVDI 642 >gi|332300337|ref|YP_004442258.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707] gi|332177400|gb|AEE13090.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707] Length = 657 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 285/579 (49%), Positives = 382/579 (65%), Gaps = 10/579 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L GY Sbjct: 9 MTTPQEKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALAGY 67 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V + D S V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ SYKVSGGL Sbjct: 68 CTEVLVEILSDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKGSYKVSGGL 127 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + R+G IY + G + V G A +DTGT +TF P Sbjct: 128 HGVGVSCVNALSESLIAEVHRDGKIYRQEYSRGKPLTGVEVVGKA-DDTGTRITFKPDDT 186 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYL 236 IF ++ +TL HRLRELS+LN+ + + LID R + P+ + + G+ FV Y+ Sbjct: 187 IFRETIYSSETLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWIFYSENGLSEFVRYV 246 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 D K+ L+ I + + +++A+ +N Y ENV + N+I +GGTHL+G R L Sbjct: 247 DGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTHLTGFRRGL 306 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y S K K + GDD REG T+++S+K+ +P+F QTK KL +SE+ VV Sbjct: 307 TRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNSEIVGVV 366 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ V++ L +LEEHP EAK+IV KV+ A+ R AARRAR+L +RK L LPGKLAD Sbjct: 367 DAAVSEALEIYLEEHPTEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGLPGKLAD 426 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP + ELF+VEGDSAGG+AKQGR + QAILPLRGKILNVE+A ++L + EI Sbjct: 427 CSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILDNAEIKN 486 Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG +G + +KLRYHKIIIMTDADVDGAHI TL+LTFFFR M LI NG Sbjct: 487 IYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMRPLIENG 546 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 ++YI PPLY + + +Y +E D++ +E Sbjct: 547 YVYIANPPLYLCKKDRIEEYCWTDEQKSDFVTKYGNGQE 585 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 54/69 (78%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 I +QRYKGLGEMN QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+ Sbjct: 588 IKIQRYKGLGEMNDVQLWDTTMNPQTRTLRQVTIDNLASADSVFSMLMSEDVEPRREFIE 647 Query: 794 ENSLPSALD 802 EN+ + +D Sbjct: 648 ENATYANID 656 >gi|257470425|ref|ZP_05634516.1| DNA gyrase subunit B [Fusobacterium ulcerans ATCC 49185] gi|317064633|ref|ZP_07929118.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185] gi|313690309|gb|EFS27144.1| DNA topoisomerase [Fusobacterium ulcerans ATCC 49185] Length = 635 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 270/585 (46%), Positives = 384/585 (65%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y A++I +L+GL+AV+KRP MYIG T E GLHH+++E++DNA+DE+L GY D I V Sbjct: 2 SNNYQAENITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNAVDEALAGYCDKIIV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + D V DNGRGIP +H + SA E+++T LHAGGKF +YKVSGGLHGVGVS Sbjct: 61 NILPDNIIEVIDNGRGIPVGIHPKYNKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W + +K +G I+ + GI + + G + GT V F +IF Sbjct: 121 VVNALSEWTDVTVKTDGKIWYQKYNRGIPEEDVKEIGVTTDH-GTSVRFKADHEIFETLI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++Y+TL++RL+EL++LN ++I L D R ++ ++GGI F+ + + L+ Sbjct: 180 YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIVDFLKEITEETEKLIPE 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G DN+++D+A + E + F NNI +GGTH+SG R+ALTR I + Sbjct: 240 PIYMSGEVDNVTVDIAFLYTVNQAEVIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKA 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ + G+D REG T+++S+K+P P+F QTK KL +SEV +V + V L Sbjct: 300 QGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKI 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 LE++P + KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADCS ++P + E Sbjct: 360 VLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A K L + E+ +ITA GT IG Sbjct: 420 IYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 DSF+I KLRY KII+MTDADVDGAHIRTLLLTF +R M LI+NG +YI +PPLY IT Sbjct: 480 -DSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITT 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 GK ++Y ++ L++ + G ++ L + Sbjct: 539 GKQIRYAYTDKELKEITDVFEGDDRKYTLQRYKGLGEMNPEQLWD 583 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 46/73 (63%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 + ++QRYKGLGEMN QLW+TT+NPDTR+LL+V I DA AD LF +LMGD+V+PRREF Sbjct: 563 RKYTLQRYKGLGEMNPEQLWDTTMNPDTRTLLQVTIDDARAADMLFDKLMGDKVDPRREF 622 Query: 792 IQENSLPS-ALDI 803 I+EN++ LDI Sbjct: 623 IEENAVYVKNLDI 635 >gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3] gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52] gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3] gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52] Length = 638 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 300/589 (50%), Positives = 404/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L GY Sbjct: 2 EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAGYCT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S TV+DNGRGIP D+H+ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 61 NIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS WL++ + R+G I+ + G L V G + TGT F P +IF Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F+Y+TL RLREL+FLN ++I+L D+R + Y+GGI ++V +L+R ++ Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNRTRE 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + PI I G RD I++++A+++NDGY N+ F NNI +GGTH SG + ALTR I Sbjct: 239 VLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K K++ ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ + Sbjct: 299 DYARKQQIFKENDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFS 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS RD Sbjct: 359 EQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +ITAL Sbjct: 419 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI +G++YI +PPL Sbjct: 479 GTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y I +GK ++Y ++ LE L + G ++ L Sbjct: 538 YKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 586 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 41/334 (12%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIKPPLYGITRGK 548 DA++ G +R L + PS G ++ + + + Sbjct: 311 DANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPT 370 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 + + ++ + + S IS +L + D D I + Y Sbjct: 371 IARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSRDPSISELYVVE 428 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDI 662 + A + ++ + + + RL+ I +E G DI Sbjct: 429 GDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDI 488 Query: 663 LVKRIAR-GVQEQFVLEGSSIFSFGSKY-KRIFSNRIEENYL----TILSLICNGDKIKI 716 R + + ++G+ I + + R IE Y+ L I G +++ Sbjct: 489 SKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRY 548 Query: 717 TGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 L+ I + + ++QRYKGLGEMN QLWETT+NP+TR+LL+V + DA Sbjct: 549 AYNDRQLEKILAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDA 604 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD+ F LMGD+VEPRR+FI+EN+ LDI Sbjct: 605 IDADETFEILMGDKVEPRRQFIEENARYVKNLDI 638 >gi|256848502|ref|ZP_05553944.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714769|gb|EEU29748.1| DNA gyrase, B subunit [Lactobacillus coleohominis 101-4-CHN] Length = 656 Score = 608 bits (1568), Expect = e-171, Method: Composition-based stats. Identities = 286/586 (48%), Positives = 396/586 (67%), Gaps = 6/586 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S YDA IQ+LKGL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+ D I V Sbjct: 21 SKYDASQIQVLKGLEAVRKRPGMYIGSTTAQ-GLHHLVWEIVDNGIDEALAGFTDEINVV 79 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D S TV+DNGRGIP D+ KE G A E + T LHAGGKF YKVSGGLHGVG SV Sbjct: 80 VEPDNSITVTDNGRGIPVDIQKETGKPALETVFTVLHAGGKFGNGGYKVSGGLHGVGASV 139 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQ 185 VNALS+ L +R+ R+G Y M F G + P+ V GT V F P DIF Sbjct: 140 VNALSTELDVRVARQGKEYYMDFQGGHVKTPMKVIKEGLPETQHGTIVHFKPDPDIFRET 199 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +N TL R+REL+FLN ++I++ DKR+ E Y+GGI +V +L+R + + Sbjct: 200 TVYNIKTLTDRIRELAFLNKGLKITIEDKRNDEDNRQEFHYEGGIRHYVEFLNRGHELIF 259 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI ++G + I++++++++ GY N+L FTNNI +GG+H +G ++ALTR I Y Sbjct: 260 DPPIYVEGEYNGITVEVSLQYTSGYRCNLLTFTNNIHTYEGGSHETGFKTALTRVINDYG 319 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K + ++ GDD REG T+V+SIK P+P+F QTK KL +S+ R+ + ++ + Sbjct: 320 RKSGQLKGNNSTLSGDDVREGLTAVVSIKHPNPQFEGQTKTKLSNSDARTATDHIFSETM 379 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + ++ EHP AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLAD + +DP Sbjct: 380 NRFMMEHPDTAKKIVEKGMLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSKDPSI 439 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A +++L++ EI +L TALGTG Sbjct: 440 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLANDEIRSLFTALGTG 499 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 G+D FD++K YHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPLY + Sbjct: 500 FGED-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIEKGYVYIAQPPLYQV 558 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +GK ++Y++ +E LE + + S + + G + L Sbjct: 559 RQGKFVKYIETDEELEQVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 604 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRV + DA+ AD++F LMG +V PRR+FI++N Sbjct: 588 IQRYKGLGEMDAEQLWETTMDPENRHLLRVDLDDAAAADEIFPMLMGTKVGPRRDFIEKN 647 Query: 796 SLPS-ALD 802 + LD Sbjct: 648 ATFVKNLD 655 >gi|330997801|ref|ZP_08321636.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841] gi|329569689|gb|EGG51454.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841] Length = 655 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 286/606 (47%), Positives = 385/606 (63%), Gaps = 19/606 (3%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ I+ ++Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YE +DN+IDE+L G Sbjct: 1 MSEEEIKGTNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYETVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D+H++E SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTHIEVTINEDNSITVQDNGRGIPVDMHEKEHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ REG IY+ + G P+ V G GT F P S Sbjct: 120 LHGVGVSCVNALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGETE-LRGTRQQFWPDS 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF + Y+ L +R+REL+FLN+ + I L D R + PR T K G++ FV Y Sbjct: 179 SIFITTTYKYEILANRMRELAFLNAGITIILTDMREKDENGVPRSETFHSKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D + L I + + + I++A+ +N+GY EN+ + NNI +GGTHL+G R+A Sbjct: 239 IDSSRIHLFNDVIYLNTEKQGVPIEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTA 298 Query: 296 LTRQITSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 LTR + Y E + +K+K + G+D REG T+V+SIK+ +P+F QTK KL +S Sbjct: 299 LTRTLKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV V+ V + LS +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + + Sbjct: 359 EVAGAVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGM 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS++D ELF+VEGDSAGGSAKQGRSR+ QAILP+RGKI NVER + K Sbjct: 419 PGKLADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFE 478 Query: 471 SQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +E+ +I ALG G + KLRY+K+IIMTDADVDG+HI TLL+T F+R MP Sbjct: 479 HEEVNNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVIS 583 LI G LYI PPLY +GK +Y E ++ + E + G ++ Sbjct: 539 ELIQKGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMN 598 Query: 584 KNDLRN 589 L Sbjct: 599 PEQLWE 604 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 5/206 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + I V + + + L E S + Sbjct: 449 QGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEVNNIIQALGVRFGLGEDSKEANYEKLR 508 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I + + + +Y + T C KI+ Sbjct: 509 YYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQKGHLYIATPPLYRCKKGKIEEYCYTE 568 Query: 722 L-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + + +G++ QRYKGLGEMN QLWETT+NP+TR L +V I DA+ AD + Sbjct: 569 ADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQLWETTMNPETRLLKQVTIEDAAGADYV 628 Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802 FS LMG++V PRREFI++N+ + +D Sbjct: 629 FSMLMGEDVGPRREFIEQNATYANID 654 >gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426] gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426] Length = 638 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 300/589 (50%), Positives = 404/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L GY Sbjct: 2 EQRVEQTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAGYCT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S TV+DNGRGIP D+H+ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 61 NIDVTIGKDNSITVADNGRGIPVDIHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS WL++ + R+G I+ + G L V G + TGT F P +IF Sbjct: 121 VGASVVNALSEWLEVYVYRDGKIHYQRYERGEPCTDLQVIGET-DRTGTTTRFKPDPEIF 179 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F+Y+TL RLREL+FLN ++I+L D+R + Y+GGI ++V +L+R ++ Sbjct: 180 TETTEFDYETLATRLRELAFLNRGLKITLTDERVDSRKNE-YVYEGGIRSYVRHLNRTRE 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + PI I G RD I++++A+++NDGY N+ F NNI +GGTH SG + ALTR I Sbjct: 239 VLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K K++ ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ + Sbjct: 299 DYARKQQIFKENDTNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFS 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS RD Sbjct: 359 EQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCSSRD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +ITAL Sbjct: 419 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI +G++YI +PPL Sbjct: 479 GTGIGEE-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y I +GK ++Y ++ LE L + G ++ L Sbjct: 538 YKIEQGKQVRYAYNDRQLEKILAELPDQPKPTIQRYKGLGEMNPEQLWE 586 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 14/204 (6%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S ++ Sbjct: 442 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEEFDISKARYHKVIIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I + + L+ I Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRELIEHGYIYIAQPPLYKIEQGKQVRYAYNDRQ-LEKI 558 Query: 727 FSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + ++QRYKGLGEMN QLWETT+NP+TR+LL+V + DA AD+ F L Sbjct: 559 LAE----LPDQPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADETFEIL 614 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRR+FI+EN+ LDI Sbjct: 615 MGDKVEPRRQFIEENARYVKNLDI 638 >gi|332881729|ref|ZP_08449377.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680368|gb|EGJ53317.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 655 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 285/606 (47%), Positives = 385/606 (63%), Gaps = 19/606 (3%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ I+ ++Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YE +DN+IDE+L G Sbjct: 1 MSEEEIKGTNYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYETVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D+H++E SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTHIEVTINEDNSITVQDNGRGIPVDMHEKEHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ REG IY+ + G P+ V G GT F P Sbjct: 120 LHGVGVSCVNALSTHMLSQVFREGKIYQQEYECGKPLYPVKVVGETE-LRGTRQQFWPDG 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF + Y+ L +R+REL+FLN+ + I+L D R + PR T K G++ FV Y Sbjct: 179 SIFITTTYKYEILANRMRELAFLNAGITITLTDMREKDENGVPRSETFHSKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D + L I + + + I++A+ +N+GY EN+ + NNI +GGTHL+G R+A Sbjct: 239 IDSSRIHLFNDVIYLNTEKQGVPIEVAIMYNNGYTENIHSYVNNINTIEGGTHLAGFRTA 298 Query: 296 LTRQITSYVEKSF-----GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 LTR + Y E + +K+K + G+D REG T+V+SIK+ +P+F QTK KL +S Sbjct: 299 LTRTLKKYAEDEYAKELEKLEKNKVEISGEDFREGLTAVISIKVAEPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV V+ V + LS +LEEHP EAK+IV KV+ A+ R AAR+AR+ +RK + + Sbjct: 359 EVAGAVQQAVGEALSYYLEEHPKEAKLIVDKVILAATARVAARKARESVQRKSPMSGGGM 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS++D ELF+VEGDSAGGSAKQGRSR+ QAILP+RGKI NVER + K Sbjct: 419 PGKLADCSDKDAANCELFIVEGDSAGGSAKQGRSRQYQAILPIRGKIFNVERVMWHKAFE 478 Query: 471 SQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 +E+ +I ALG G + KLRY+K+IIMTDADVDG+HI TLL+T F+R MP Sbjct: 479 HEEVNNIIQALGVRFGLGEDSKEANYEKLRYYKVIIMTDADVDGSHIDTLLMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVIS 583 LI G LYI PPLY +GK +Y E ++ + E + G ++ Sbjct: 539 ELIQKGHLYIATPPLYRCKKGKIEEYCYTEADRLRFMQQYNNGSEQGMTTQRYKGLGEMN 598 Query: 584 KNDLRN 589 L Sbjct: 599 PEQLWE 604 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 5/206 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + I V + + + L E S + Sbjct: 449 QGRSRQYQAILPIRGKIFNVERVMWHKAFEHEEVNNIIQALGVRFGLGEDSKEANYEKLR 508 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I + + + +Y + T C KI+ Sbjct: 509 YYKVIIMTDADVDGSHIDTLLMTLFYRYMPELIQKGHLYIATPPLYRCKKGKIEEYCYTE 568 Query: 722 L-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + + +G++ QRYKGLGEMN QLWETT+NP+TR L +V I DA+ AD + Sbjct: 569 ADRLRFMQQYNNGSEQGMTTQRYKGLGEMNPEQLWETTMNPETRLLKQVTIEDAAGADYV 628 Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802 FS LMG++V PRREFI++N+ + +D Sbjct: 629 FSMLMGEDVGPRREFIEQNATYANID 654 >gi|58696735|ref|ZP_00372279.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537087|gb|EAL60209.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 621 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 324/634 (51%), Positives = 430/634 (67%), Gaps = 20/634 (3%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDTD SGLHHM+YEV+DNAIDESL GY D I V++N DGS +V+DNGRGIPTD+H+ Sbjct: 1 MYIGDTDDGSGLHHMVYEVIDNAIDESLAGYCDKIEVSINKDGSVSVTDNGRGIPTDIHE 60 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 EEGISAAEVIMT+LHAGGKF+ +YKVSGGLHGVG+SVVNALSSWL+L I R + M Sbjct: 61 EEGISAAEVIMTQLHAGGKFDSNTYKVSGGLHGVGISVVNALSSWLELTIWRNKKEHFMR 120 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F +G PL V N GT+VTF+PS++ F+ +F+Y TL+ R+REL+FLNS++ I+ Sbjct: 121 FEDGESIEPLKVVNENTNKRGTKVTFMPSTETFNGINFSYSTLESRIRELAFLNSNIDIT 180 Query: 210 LIDKRSPEPREITMFYKGGIEA-----FVSYLDRHKKPLMQSPIRIQG--SRDNISIDLA 262 L D R+ E + K + ++G IS++++ Sbjct: 181 LRDLRNEPYTESHFNQSNQSKDNFGTANFVQYLDKNKTHVTKIASMKGDAEDLGISLEIS 240 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M WND Y+EN+LCFTNNI Q+DGGTHL+G RSALT+ I +Y KK K ++ G+D Sbjct: 241 MEWNDSYYENMLCFTNNIRQRDGGTHLAGFRSALTKCINTYATNEGFLKKAKVNLTGEDV 300 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T VLS+KMPDP+FSSQTK+KLVSSE R+VVES V+D LS LE P A IV++ Sbjct: 301 REGLTCVLSLKMPDPKFSSQTKDKLVSSEARAVVESIVSDKLSTILETDPKLAASIVERA 360 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + ++ R+AAR+AR+L + K +DIA+LPGKLADC E+ P+ SELF+VEG+SAGG+AKQG Sbjct: 361 IRSAKGREAARKARELVKSKNNIDIATLPGKLADCQEKAPELSELFIVEGNSAGGTAKQG 420 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R+R+ QA+L LRGKILNVER D++ SS EIG+LITA+G GIG + FDI K RYHKIII Sbjct: 421 RNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIEKARYHKIII 480 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDG+HIRTL+LTFFFR M +I G+LYI +PPLY +T+ Y+KD+E+ E+Y Sbjct: 481 MTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYIKDDETFEEY 540 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 +IN ++ ++ NDLR ++ + I + K++ + +E +I Sbjct: 541 IINSAVKRLTLSSTATE----FNDLRLILNKCVSISNISKNYDREIPQNLLESLLIL--- 593 Query: 623 NCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 ++ +S A + L + SE +W Sbjct: 594 ----SKKNALSSADDILKYLKLM--YSEYTWEVE 621 >gi|228474124|ref|ZP_04058865.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624] gi|228274638|gb|EEK13479.1| DNA gyrase, B subunit [Capnocytophaga gingivalis ATCC 33624] Length = 656 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 296/664 (44%), Positives = 418/664 (62%), Gaps = 26/664 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + + Y AD+IQ L+G++ V+ RPSMYIGD G GLHH++YEVLDN+IDE+L GY Sbjct: 1 MSEQLDPNKYSADNIQSLEGMEHVRVRPSMYIGDV-GVRGLHHLVYEVLDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V +N D S TV DNGRGIP D+HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTISVVINPDNSVTVEDNGRGIPVDIHKKEGVSALEVVMTKIGAGGKFDKGSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVV+ALS+ L + R+G I+E + GI + G GT+VTFLP ++ Sbjct: 120 HGVGVSVVDALSTHLTATVFRDGKIWEQEYERGIALYQVKEKGKTE-KRGTKVTFLPDTE 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSY 235 IF +FNYD L +R+REL+FLN + I+L D R + P T + + G+E F+ Y Sbjct: 179 IFQQTVEFNYDILANRIRELAFLNKGIHITLTDLRHQDEKGAPISQTFYSEKGLEEFIQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD ++ P+++ I ++G ++ I +++AM +ND ++EN+ + NNI +GGTHL G R Sbjct: 239 LDGNRTPIIKKIIAMEGEKNEIPVEVAMIYNDSFNENLHSYVNNINTHEGGTHLQGFRMG 298 Query: 296 LTRQITSYVEKSFGSK------KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 LTR + +Y +KS + K+ + GDD REG T+++S+K+ +P+F QTK KL + Sbjct: 299 LTRTLKNYADKSGLLEKASKDKKNPLEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGN 358 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 EV + V V+D L ++LEE+P +AK IV KV+ A+ R AA++AR+ +RK + A Sbjct: 359 REVTAAVSQAVSDMLESYLEENPEDAKTIVNKVILAAQARLAAKKAREAVQRKSPMGGAG 418 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LP KLADC +++P+ ELFLVEGDSAGG+AKQGR ++ QAILPLRGKILNVE+A ++ Sbjct: 419 LPNKLADCQDKNPENCELFLVEGDSAGGTAKQGRDQKFQAILPLRGKILNVEKAMQHRVF 478 Query: 470 SSQEIGTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 ++EI + TALG IG + +I+KLRYHKIIIM+DADVDG+HI TL+LTFFFR M Sbjct: 479 ENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKIIIMSDADVDGSHIATLILTFFFRYM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 LI G +YI PPLY + +GK QY +E + +E +K + + Sbjct: 539 RELIEEGHVYIATPPLYLLKQGKKEQYAWSDEERDAIT------KEFYEQAQTKVAVQRY 592 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN---VSLASKLANRL 642 ++ D + + K IE AV + + K A Sbjct: 593 KGLGEMNAEQLADTTMDPRHRTLRKVTIENAVEADRIFSMLMGDDVPPRREFIEKNAKYA 652 Query: 643 NFIA 646 N A Sbjct: 653 NIDA 656 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 13/204 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + + A K + I I+ Sbjct: 460 LPLRGKILNVEKAMQHRVFENEEIKNIYTALGVTIGTEEDAKALNISKLRYHKI----II 515 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSL 722 + L + F +Y R L L+ G K + Sbjct: 516 MSDADVDGSHIATLILTFFF----RYMRELIEEGHVYIATPPLYLLKQGKKEQYAWSDEE 571 Query: 723 LDTIFSI----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 D I + +++QRYKGLGEMNA QL +TT++P R+L +V I +A +AD +FS Sbjct: 572 RDAITKEFYEQAQTKVAVQRYKGLGEMNAEQLADTTMDPRHRTLRKVTIENAVEADRIFS 631 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMGD+V PRREFI++N+ + +D Sbjct: 632 MLMGDDVPPRREFIEKNAKYANID 655 >gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 291/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT Sbjct: 1 NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 + + V+DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVN LS W + I ++G IYE + GI L + G+ + TGT ++F IF+ Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKIKGNT-DKTGTIISFQADPLIFTET 178 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +NY+TL+ R+++L+FLN ++++LID R E + + Y+GGI +V +L++ K + Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEESKIESFHYEGGITEYVKFLNQSKSKIH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I I +D I+++LAM++ D Y N+ FTNNI +GG H G + ALTR I+ Y Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + S+ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ + Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P +AK IV+KVL A+ R AAR+A+DLTRRK LD KLADC +DP+K Sbjct: 357 ERFLMENPTQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTG Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY I Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + G++ QY +E+ L + L I+ + + ++ +D A + IK Sbjct: 536 SWGRNFQYAYNEQELNEILKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + V ++G+ I + + R I+ Y L Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I G + L+ I S+QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 535 ISWGRNFQYAYNEQELNEILKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +AD +FS LMG+EVEPR+EFIQ N+ + DI Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 629 >gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293] gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293] Length = 636 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 304/633 (48%), Positives = 418/633 (66%), Gaps = 11/633 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SY A +IQ+LKGLDAV+KRP MYIG T G GLHH++YE++DN+IDE+L G+ D I V Sbjct: 2 QNSYSAQNIQVLKGLDAVRKRPGMYIGST-GPEGLHHLVYEIVDNSIDEALAGFCDEILV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + V DNGRGIPTDLHKEEG+SA E++MT+LHAGGKFN+ +YKVSGGLHGVGVS Sbjct: 61 VIEKGNIIRVEDNGRGIPTDLHKEEGVSALEIVMTKLHAGGKFNKDTYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W + + R+G+I+ + G + + G GT F P +IF + Sbjct: 121 VVNALSEWCDVFVHRDGSIFYQKYDRGNPEKDVATVGETTRH-GTITRFKPDGEIFETVE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F++D L RLREL+FLN ++I + D+R P+ + ++GG+++FVS+L KKP+ + Sbjct: 180 FSFDVLSRRLRELAFLNKGIRIIIEDERLPQKKTKEFQFEGGVKSFVSFLSESKKPIHKE 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI +G RD I ++ A+ +N+GY EN+ F NNI ++GGTHL G ++ALTR +++K Sbjct: 240 PIYFEGIRDGIDLECALEYNEGYSENIFSFVNNINTREGGTHLVGFKTALTRTFNDFLKK 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 S +KK + GDD REG T+V+S+K+PDP+F QTK KL +SEVR VVES V + L+ Sbjct: 300 SKFAKKMDETFSGDDVREGLTAVVSVKVPDPQFEGQTKAKLGNSEVRGVVESLVAEHLTY 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + EE+P + I++K+ A+ R AAR+ARDLTRRK L+ +SLPGKLADC+E+DP KSE Sbjct: 360 YFEENPKLIEKILEKITMAARARIAARKARDLTRRKSALESSSLPGKLADCAEKDPSKSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R+ QAILPL GK+LNVE+ R DK+L++ ++ +I LG G G Sbjct: 420 VYIVEGDSAGGSAKQGRDRQFQAILPLWGKMLNVEKTRADKVLTNDKLQPIIATLGAGAG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ FDI+K+RYHK+IIM DADVDG+HIRTLLLTFFFR MP L+ G++YI PPLY + Sbjct: 480 KE-FDISKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMPELVERGYVYIAMPPLYKMQL 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 GKS+ Y DE E + + E G ++ N L +D + Sbjct: 539 GKSITYAYDERDREKIMKSLFAEETEKVAIQRYKGLGEMNPNQLWET-----TMDPDSRK 593 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +E I E + + Sbjct: 594 IMQVRLEDAVEADQIFSTLMGEDVEPRRKFIED 626 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 68/83 (81%), Gaps = 1/83 (1%) Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 ++ ++F+ + +++QRYKGLGEMN +QLWETT++PD+R +++V++ DA +AD +FS LM Sbjct: 554 IMKSLFAEETEKVAIQRYKGLGEMNPNQLWETTMDPDSRKIMQVRLEDAVEADQIFSTLM 613 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G++VEPRR+FI++N+L LDI Sbjct: 614 GEDVEPRRKFIEDNALMVSNLDI 636 >gi|332664690|ref|YP_004447478.1| DNA gyrase subunit B [Haliscomenobacter hydrossis DSM 1100] gi|332333504|gb|AEE50605.1| DNA gyrase, B subunit [Haliscomenobacter hydrossis DSM 1100] Length = 655 Score = 608 bits (1567), Expect = e-171, Method: Composition-based stats. Identities = 283/595 (47%), Positives = 385/595 (64%), Gaps = 12/595 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ Y A +IQ L+GL+AV+KRP MYIG TD GLHH+++EV+DN+IDE L G+ Sbjct: 14 ESNGADDYGASNIQALEGLEAVRKRPGMYIGSTDS-KGLHHLVWEVVDNSIDEHLAGFCT 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V ++ D S TV D+GRGIPT +H + SA EV+MT LHAGGKF++ +YKVSGGLHG Sbjct: 73 QIDVIVHEDNSVTVKDDGRGIPTGMHPKLKKSALEVVMTVLHAGGKFDKNTYKVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS +L+ + REG I+ F G + + G + GT +TF P I Sbjct: 133 VGVSCVNALSDYLRAEVHREGKIFVQEFAKGKPMGDVQIIGDSP-LHGTTITFRPDGTIL 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F Y+ L R++ELSFLN ++++L D+R+ + + +GG+ FV YLD KKP Sbjct: 192 EALVFEYEILVRRVKELSFLNKGLKLNLTDERTGKT--ESFLSEGGLREFVKYLDGAKKP 249 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L+ PI + +D++ +++AM +N+ Y EN+ + NNI ++GGTH+ G R AL R Sbjct: 250 LLDEPIYVMTRKDDVEVEVAMIYNESYQENIYSYVNNIHTREGGTHVRGFRMALARVFKQ 309 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y E S KK K + G+D REG T+V+S+K+ +P+F QTK +L +SEV ++V V D Sbjct: 310 YGEDSGAFKKLKEEISGEDFREGLTAVISVKVQEPQFKGQTKGELGNSEVTTIVSQCVGD 369 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L ++EE+P EAK IV+KV+ A+ R AAR+AR++ +RK +L LPGKLADCS +DP Sbjct: 370 VLKNFVEENPREAKRIVEKVILAATARHAARKAREMVQRKNILTGGGLPGKLADCSSKDP 429 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +SE+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI + TALG Sbjct: 430 YESEVFLVEGDSAGGTAKQGRDRHIQAILPLRGKILNVEKAMEHKIYENEEIKNIFTALG 489 Query: 483 TGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I G +I KLRYHK++IMTDADVDG+HI TL+LTFFFR M LI NG +YI Sbjct: 490 VSIEENENGDRVLNIAKLRYHKVVIMTDADVDGSHITTLILTFFFRYMRPLIENGNIYIA 549 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI---ELFCDSKGVISKNDLRN 589 PPLY I RGK +Y +EE + + + E G ++ L Sbjct: 550 APPLYLIKRGKQERYCWNEEERKATIEEFGGNNESNVKVQRYKGLGEMNAEQLWE 604 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 13/275 (4%) Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + + + + + + K+ + + + + ++ + Sbjct: 388 KVILAATARHAARKAREMVQRKNILTGGGLPGKLADCSSKDPYESEVFLVEGDSAGGTAK 447 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + +E+A+ ++ E + I +L + N ++ Sbjct: 448 QGRD-RHIQAILPLRGKILNVEKAMEHKIYENEEIKNIFTALGVSIEENEN-----GDRV 501 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + + +V V + F F I + I L LI G Sbjct: 502 LNIAKLRYHKVVIMTDADVDGSHITTLILTFFFRYMRPLIENGNIY-IAAPPLYLIKRGK 560 Query: 713 -KIKITGPCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKI 767 + TI G + +QRYKGLGEMNA QLWETT++P+ R +LR V I Sbjct: 561 QERYCWNEEERKATIEEFGGNNESNVKVQRYKGLGEMNAEQLWETTMDPE-RRMLRSVNI 619 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +FS LMGDEV PRR+FI+EN+ + +D Sbjct: 620 DDAMEADRVFSMLMGDEVPPRRQFIEENAKYANVD 654 >gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 292/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT Sbjct: 1 NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 + + V+DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVN LS W + I ++G IYE + GI L V GS + +GT ++F IF+ Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTET 178 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +NY+TL+ R+++L+FLN ++++LID R E + + Y+GGI +V +L++ K + Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSKIH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I I +D I+++LAM++ D Y N+ FTNNI +GG H G + ALTR I+ Y Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + S+ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ + Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P +AK IV+KVL A+ R AAR+A+DLTRRK LD KLADC +DP+K Sbjct: 357 ERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTG Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY I Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + G++ QY +E+ L + L I+ + + ++ +D A + IK Sbjct: 536 SWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 7/156 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + V ++G+ I + + R I+ Y L Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I G + L+ + S+QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +AD +FS LMG+EVEPR++FIQ+N+ + DI Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKDFIQKNAQYAT-DI 629 >gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii] gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii] gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii] Length = 631 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 292/598 (48%), Positives = 398/598 (66%), Gaps = 6/598 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT Sbjct: 1 NNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEIT 59 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 + + V+DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 IEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGA 119 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVN LS W + I ++G IYE + GI L V GS + +GT ++F IF+ Sbjct: 120 SVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFTET 178 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +NY+TL+ R+++L+FLN ++++LID R E + + Y+GGI +V +L++ K + Sbjct: 179 VIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSKIH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I I +D I+++LAM++ D Y N+ FTNNI +GG H G + ALTR I+ Y Sbjct: 239 NDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + S+ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ + Sbjct: 299 DDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAI 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L E+P +AK IV+KVL A+ R AAR+A+DLTRRK LD KLADC +DP+K Sbjct: 357 ERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+++VEGDSAGGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTG Sbjct: 417 SEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY I Sbjct: 477 I-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + G++ QY +E+ L + L I+ + + ++ +D A + IK Sbjct: 536 SWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 593 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + V ++G+ I + + R I+ Y L Sbjct: 475 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 534 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I G + L+ + S+QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 535 ISWGRNFQYAYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 594 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +AD +FS LMG+EVEPR+EFIQ N+ + DI Sbjct: 595 EDAIEADQVFSMLMGEEVEPRKEFIQNNAQYAT-DI 629 >gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989] gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989] Length = 655 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 274/636 (43%), Positives = 397/636 (62%), Gaps = 13/636 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 SY AD IQ+L+GL+AV+ RP MYIG T GLHH+++E++DN IDE+L G+A+ Sbjct: 21 TQVEHSYTADDIQVLEGLEAVRLRPGMYIGSTSA-RGLHHLVWEIVDNGIDEALAGFANR 79 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ D V DNGRG+P +H++ GISA E IMT LHAGGKF +YKVSGGLHGV Sbjct: 80 IDVTIEPDNIIAVRDNGRGMPVGIHEKTGISAVETIMTVLHAGGKFGGGAYKVSGGLHGV 139 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL++ + ++G IY + F N G PL V G +TGT V F S IF Sbjct: 140 GASVVNALSEWLEVTVFQDGKIYFIRFENGGHAVEPLKVIGETT-ETGTLVRFKADSQIF 198 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 ++Y+ L RLR+L+FLN ++++L DKR+P+ Y+GGI +V +L+++K Sbjct: 199 KDTTVYDYEILNSRLRQLAFLNKDIRLTLTDKRTPDGLSNDYKYEGGIIEYVQFLNKNKS 258 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + I ++G +D I ++A+++NDGY ++ F NNI +GG H G R ALTR I Sbjct: 259 TISDKVIYVEGLQDGILAEVALQYNDGYQSSIYSFCNNIHTHEGGYHEDGFRMALTRCIN 318 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y + + K ++ DD +EG +++S+K PDP++ QTK KL +SEVR +V + Sbjct: 319 TYAKNNNMIK-KDETLSQDDVKEGLVAIISVKHPDPQYEGQTKTKLGNSEVRKIVSNIAG 377 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI-ASLPGKLADCSER 420 + ++ + E+P AK IV+K AS R AA++AR+LTRRK LD +SLPGKL DCS + Sbjct: 378 EQINRFFLENPDIAKAIVEKAEIASKARIAAKKARELTRRKSALDGISSLPGKLTDCSSK 437 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D + E+++VEGDSAGGSAKQGR + QAILPLRGKILNVE+AR ++ +QEI ++ITA Sbjct: 438 DASECEIYIVEGDSAGGSAKQGRDAKTQAILPLRGKILNVEKARTHRIFENQEIRSMITA 497 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GI +D D++KLRYHKI+IMTDADVDG+HI TL+LTF +R M +I G++YI +PP Sbjct: 498 FGCGIQEDV-DVSKLRYHKIVIMTDADVDGSHICTLMLTFLYRFMKPVIEGGYVYIAQPP 556 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK + Y E+ ++ +++ + + ++ +D ++ Sbjct: 557 LYKVQKGKKIAYAYKEQEMDQLREEFKDGYKVQRYKGLGEMDAEQLWETTMDPHHRV--- 613 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +E + + E + + Sbjct: 614 ---LKRVTIDDAMEADSVFDMLMGEDVEPRREYIQE 646 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 48/100 (48%), Positives = 64/100 (64%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L + G KI +D + + G +QRYKGLGEM+A QLWETT++P R L Sbjct: 555 PPLYKVQKGKKIAYAYKEQEMDQLREEFKDGYKVQRYKGLGEMDAEQLWETTMDPHHRVL 614 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 RV I DA +AD +F LMG++VEPRRE+IQEN++ + LD Sbjct: 615 KRVTIDDAMEADSVFDMLMGEDVEPRREYIQENAVYANLD 654 >gi|91215255|ref|ZP_01252227.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755] gi|91186860|gb|EAS73231.1| DNA gyrase, B subunit [Psychroflexus torquis ATCC 700755] Length = 655 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 284/606 (46%), Positives = 407/606 (67%), Gaps = 11/606 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ ++ ++Y ADSIQ L+G++ V+ RPSMYIGD GE GLHH++YEV+DN+IDE++ GY Sbjct: 10 MSEEVKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GERGLHHLVYEVVDNSIDEAMGGY 68 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + +N DGS T DNGRGIP DLHK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 69 CDKIDLVINEDGSVTTLDNGRGIPIDLHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L R+ ++G ++E + G P+ TG + GTE+TF P S+ Sbjct: 129 HGVGVSVVNALSVKLHARVFKDGKVWEQEYERGKAIYPVKPTGDTEHK-GTEITFKPDSE 187 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF +F Y+TL RLRELS+LN ++IS+IDKR E R+ + + G++ F+ + Sbjct: 188 IFQESVEFKYETLAKRLRELSYLNKGIRISIIDKRQTNDDGEYRQDEFYSEEGLKEFIRF 247 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +D++++P++ I ++ ++NI +++AM +N+ Y EN+ + NNI +GGTHLSG R Sbjct: 248 IDQNREPIITDVISMESEKNNIPVEVAMVYNNSYSENLHSYVNNINTHEGGTHLSGFRRG 307 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + E+ S Sbjct: 308 LTATLKKYADNSGLLDKLKFEITGDDFREGLTAIVSVKVANPQFEGQTKTKLGNRELTSA 367 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V + L +LEE+P +AK IV+KV+ A+ R AA++AR++ +RK V+ LPGKL+ Sbjct: 368 VSQAVTEMLEIYLEENPNDAKTIVQKVMLAAQARHAAKKAREMVQRKTVMSGGGLPGKLS 427 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP+ E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A ++ ++EI Sbjct: 428 DCSEQDPEACEVFLVEGDSAGGTAKQGRDRKFQAILPLRGKILNVEKAMQHRVFENEEIK 487 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + +KLRYHK+IIM DADVDG+HI TL+LTFFFR M LI Sbjct: 488 NIYTALGVTIGTEEDSKALNLSKLRYHKVIIMCDADVDGSHIATLILTFFFRYMKELIEA 547 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 +YI PPLY I +G +Y +E+ + + S ++ + + + + Sbjct: 548 SHIYIATPPLYLIKKGSKKRYAWNEKERNEIVNEYKTSVSVQRYKGLGEMNAIQLWDTTM 607 Query: 592 DDALKI 597 + +I Sbjct: 608 NPENRI 613 Score = 164 bits (414), Expect = 8e-38, Method: Composition-based stats. Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 7/199 (3%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ VF E + I +L + E+ K+ + S + Sbjct: 463 LPLRGKILNVEKAMQHRVFENEEIKNIYTALGVTIG------TEEDSKALNLSKLRYHKV 516 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F F + I ++ I L LI G K + Sbjct: 517 IIMCDADVDGSHIATLILTFFFRYMKELIEASHIY-IATPPLYLIKKGSKKRYAWNEKER 575 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + I + + +S+QRYKGLGEMNA QLW+TT+NP+ R L RV I D ++AD +FS LMGD Sbjct: 576 NEIVNEYKTSVSVQRYKGLGEMNAIQLWDTTMNPENRILRRVTIVDMAEADRIFSMLMGD 635 Query: 784 EVEPRREFIQENSLPSALD 802 EV PRREFI++N++ + +D Sbjct: 636 EVPPRREFIEQNAVYANID 654 >gi|325478798|gb|EGC81908.1| DNA gyrase, B subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 633 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 282/585 (48%), Positives = 400/585 (68%), Gaps = 5/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +Q ++YDA +I++L+GL+ V+ RP MYIG T E GLHH++YEV+DN++DE+L G D I Sbjct: 1 MQENNYDAGNIRVLEGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D TV D+G GIP H S E ++T LHAGGKF+ K+Y+ SGGLHGVG Sbjct: 60 KVIVSKDNIITVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDKAYQFSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L +KR+G+IY+MSF G + + L V G +TGT++TF P ++IF Sbjct: 120 VSVVNALSEYLIAEVKRDGHIYKMSFSRGEVTSELEVIGDTK-ETGTKITFKPDAEIFDT 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+ TL++R RE++FLN V+I + E + + GGI FV YL+R+K P+M Sbjct: 179 TIFDRKTLENRFREMAFLNKGVEIIF--EDQREDFSESFKFDGGISEFVKYLNRNKTPIM 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 G +++I ++++ ++ DGY EN+L + NNI +GGTHLSG RSALTR + Y Sbjct: 237 DVIPHFDGMQEDIEVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTRTVNDYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+++ ++ G+D REG T+++S+K+ +P+F QTK KL +SEVR V++FV+ L Sbjct: 297 RNFKFIKENEDNLQGEDIREGITAIISVKISEPQFEGQTKAKLGNSEVRGAVDTFVSQRL 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 A+LEE+P AK I++K L + R+AAR+ARDLTR++ +LD +LPGKLADC D + Sbjct: 357 QAFLEENPKPAKAIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSTDLAE 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+S+EI +ITA GTG Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMITAFGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +Y+ +PPLY I Sbjct: 477 IGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + G++ +YV + + L + G ++ + L + Sbjct: 536 SHGRNERYVYTDAERDKVLKELDVENYKINRYKGLGEMNADQLWD 580 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + K + S ++ V + Sbjct: 449 IMNVEKANLDRILNSEEIKAMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 508 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + ++ + + + + + RYK Sbjct: 509 LTFFYRYMKPLIDEGHVYVAQPPLYKISHGRNERYVYTDAERDKVLKELDVENYKINRYK 568 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLP 798 GLGEMNA QLW+TT++PD R LLRV D DD FS LMG++VEPRR FIQEN+ Sbjct: 569 GLGEMNADQLWDTTMDPDHRVLLRVN-EDFESTSTDDTFSLLMGEKVEPRRNFIQENAKY 627 Query: 799 S-ALDI 803 +D+ Sbjct: 628 VSNIDV 633 >gi|318042881|ref|ZP_07974837.1| DNA gyrase subunit B [Synechococcus sp. CB0101] Length = 653 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 289/651 (44%), Positives = 400/651 (61%), Gaps = 17/651 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V LN DGSC V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDQILVVLNEDGSCAVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178 LHGVGVSVVNALS W+++ + R+G + F G L +A + TGT V F P Sbjct: 120 LHGVGVSVVNALSEWVEVTVHRQGQEHLQRFERGAPIGSLASKPAADPSRTGTSVCFKPD 179 Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231 +IF+ +F+Y TL RLREL++LN V+I D+R E Y+GGI+ Sbjct: 180 IEIFTGGIEFDYHTLSARLRELAYLNGGVRIVFRDERPAARNAEGAAHEEIYHYEGGIKE 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +V+Y++ K L I + +D + ++ A++W D Y +N+ F NNI DGGTH+ Sbjct: 240 YVAYMNAEKDALHPDIIYVNSEKDGVQVEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GL++ LTR + ++ +K K ++ G++ REG T+VLS+K+P+P F QTK KL ++ Sbjct: 300 GLKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNT 359 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ ++L Sbjct: 360 EVRGIVDSLVGEALSEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI LITALG GI + FD LRYH+I+IMTDADVDGAHIRTLLLTFF+R +L+ Sbjct: 480 NTEIQALITALGLGIKGEEFDEKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKALVE 539 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI PPLY + RGK+ Y +E L+ + G + L Sbjct: 540 GGYIYIACPPLYKVERGKNHSYCYNEGDLKRVVEGFGEKANYTIQRFKGLGEMMPQQLWE 599 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 +D + + E I + + + + A Sbjct: 600 T-----TMDPTTRTMKRVEIEDAAEADRIFTILMGDKVAPRREFIETHSAE 645 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 129/330 (39%), Gaps = 35/330 (10%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 DA++ G +IR L ++P G + + GI + + + Sbjct: 322 ADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEALSEYLEFNP 381 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 382 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEG 441 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659 +G + ++ LN K + + Sbjct: 442 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDE 501 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKI 714 ++ RI + ++G+ I + + + + E L + G Sbjct: 502 KNLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKALVEGGYIYIACPPLYKVERGKNH 559 Query: 715 K-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 L + G K ++QR+KGLGEM QLWETT++P TR++ RV+I DA++ Sbjct: 560 SYCYNEGDLKRVVEGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAE 619 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALD 802 AD +F+ LMGD+V PRREFI+ + + LD Sbjct: 620 ADRIFTILMGDKVAPRREFIETH--SAELD 647 >gi|148238483|ref|YP_001223870.1| DNA gyrase subunit B [Synechococcus sp. WH 7803] gi|147847022|emb|CAK22573.1| DNA gyrase subunit B [Synechococcus sp. WH 7803] Length = 655 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 291/661 (44%), Positives = 403/661 (60%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V L DGS +V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCSEIQVVLGEDGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAPIGSLASEPQPAEEDGRTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IFSV F+Y TL RLREL++LN V+I D+R P E T FY+GGI Sbjct: 180 PDIEIFSVGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDAEGNPHEETYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K L I + +D +S++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNAEKDALHPEIIYVNAEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V + L +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGEALGQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGEKANYNIQRFKGLGEMMPQQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMTAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 10/175 (5%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSK 688 +K+ A + + D+ R R V + F + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + + I + + + L T+ G K ++QR+KGLGEM Sbjct: 537 KELVDGGYIYIACPPLYKVERGKNHTYCYNEPELQKTLEGFGEKANYNIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ + + LD Sbjct: 597 QQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SAELD 649 >gi|159904302|ref|YP_001551646.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9211] gi|159889478|gb|ABX09692.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9211] Length = 658 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 286/619 (46%), Positives = 400/619 (64%), Gaps = 18/619 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N + Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEDSKVNKVQADYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I V L DGS +++DNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDEIVVVLCNDGSASITDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEV 173 SGGLHGVGVSVVNALS W+++ ++R+ + F G+ L + TGT V Sbjct: 120 SGGLHGVGVSVVNALSEWVEVTVRRQNQTHVQRFERGVPVGGLTSKDQPSSQKGVTGTTV 179 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYK 226 F P + IF+ +F Y TL RLREL++LN V+I D+R +P E FY+ Sbjct: 180 CFKPDNQIFTSGIEFEYATLSSRLRELAYLNGGVRIVFRDERKTSLTTEGDPYEEIYFYQ 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDG 285 GGI+ +VSY++ K L I + +D + ++ A++W D Y +++L F NNI DG Sbjct: 240 GGIKEYVSYINSEKDALHPEIIYVNSEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDG 299 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH+ GL++ LTR + S+ K K ++ G++ REG T VLS+K+P+P F QTK Sbjct: 300 GTHIEGLKTVLTRTLNSFARKRGKRKDGDNNLAGENIREGLTVVLSVKVPEPEFEGQTKT 359 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL Sbjct: 360 KLGNTEVRGIVDSLVGESLSQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVL 419 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 + ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ Sbjct: 420 ESSTLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDD 479 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 K+ + EI +LITALG GI + F LRYH+++IMTDADVDGAHIRTLLLTFF+R Sbjct: 480 SKIYKNTEIQSLITALGLGIKGEEFSSKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 539 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVIS 583 L+ G++YI PPLY + RGK +Y +E L+ + + + I+ F ++ Sbjct: 540 KELVEGGYIYIACPPLYKVERGKKHKYCYNESDLKKTIDGFGEKANYTIQRFKGLGEMMP 599 Query: 584 KNDLRNFIDDALKIDKLIK 602 K +D + ++ K ++ Sbjct: 600 KQLWETTMDPSTRMMKKVE 618 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLIC 709 ++ ++ R+ + ++G+ I + + + + E L + Sbjct: 502 EEFSSKNLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVE 559 Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G K K L TI G K ++QR+KGLGEM QLWETT++P TR + +V+I Sbjct: 560 RGKKHKYCYNESDLKKTIDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKKVEI 619 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +F+ LMGD+V PRR+FI+ + LD Sbjct: 620 EDALEADRIFTILMGDKVAPRRQFIETH--SVELD 652 >gi|184154481|ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956] gi|227514123|ref|ZP_03944172.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|260662542|ref|ZP_05863437.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN] gi|183225825|dbj|BAG26341.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956] gi|227087494|gb|EEI22806.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|260553233|gb|EEX26176.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN] gi|299782689|gb|ADJ40687.1| DNA gyrase subunit B [Lactobacillus fermentum CECT 5716] Length = 649 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 286/629 (45%), Positives = 407/629 (64%), Gaps = 14/629 (2%) Query: 1 MSDNIQN-------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 M+ + S YDA IQ+LKGL+AV+KRP MYIG T GLHH+++E++DN I Sbjct: 1 MTQQEEQARKAELASEYDASQIQVLKGLEAVRKRPGMYIGST-TVQGLHHLVWEIVDNGI 59 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE+L G+ D I V + D S V+DNGRGIP D+ KE G A E + T LHAGGKF Sbjct: 60 DEALAGFCDEINVIVEPDNSIIVTDNGRGIPVDIQKETGKPALETVFTVLHAGGKFGNGG 119 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGT 171 YKVSGGLHGVG SVVNALS+ L +++ R+G Y M F G ++ + V + GT Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFARGHVNTAMKVIKDDLPQSAHGT 179 Query: 172 EVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 V F+P +IF +N +TL RLREL+FLN ++I++ D+R + ++ + Y+GGI Sbjct: 180 TVHFVPDPEIFRETTVYNINTLIDRLRELAFLNKGLKITVEDRREGKEKQESFHYEGGIR 239 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +V +L+ + L PI ++G I++++++++ D Y N+L FTNNI +GGTH + Sbjct: 240 HYVEFLNEGHELLFDPPIYVEGEYKGITVEVSLQYTDDYRSNLLTFTNNIHTYEGGTHET 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G ++ALTR I Y KS K + ++ G+D REG T+V+SIK P+P+F QTK KL +S Sbjct: 300 GFKTALTRVINDYGRKSGQIKGN-VTLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLSNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R+ + + ++ ++ E+P A+ IV+K + AS RDAA+RAR++TR+K L+I++L Sbjct: 359 DARTATDHIFAETMTRFMMENPDVARKIVEKGMLASKARDAAKRAREVTRKKSGLEISNL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLAD + +DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A +++L+ Sbjct: 419 PGKLADNTSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLNRVLA 478 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI +L TALGTG G D FD+NK YHK+IIMTDADVDGAHIRTLLLT F+R M +I Sbjct: 479 NEEIRSLFTALGTGFG-DDFDVNKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPMIE 537 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI +PPLY + +GK ++Y++++E LE + + S + + G + L Sbjct: 538 KGYVYIAQPPLYQVRQGKFVKYIENDEELERVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 597 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVI 618 D L I Q ++ Sbjct: 598 TTMDPANRHLLRVKLDDAKAADEIFQMLM 626 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P R LLRVK+ DA AD++F LMG +V PRREFI+EN Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPANRHLLRVKLDDAKAADEIFQMLMGTKVGPRREFIEEN 640 Query: 796 SLPS-ALD 802 + LD Sbjct: 641 ATFVENLD 648 >gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205] Length = 653 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 290/614 (47%), Positives = 407/614 (66%), Gaps = 13/614 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V + DGSC+VSDNGRGIPTD+H + G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCNEIRVAIEEDGSCSVSDNGRGIPTDVHPKTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178 LHGVGVSVVNALS W+++ + R+G + F G L + +A + TGT V F P Sbjct: 120 LHGVGVSVVNALSEWVEVVVYRQGKEHRQRFERGAPIGTLAIEPAADASRTGTTVRFKPD 179 Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231 +IF+V +F+Y+TL RLREL++LN V+I D+R E E Y+GGI+ Sbjct: 180 LEIFTVGIEFDYNTLSARLRELAYLNGGVKIVFRDERPAARNAEGEAHEEIYHYEGGIKE 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +V+Y++ K L I + +D + I+ A++W D Y +N+ F NNI DGGTH+ Sbjct: 240 YVAYMNAEKDALHPDIIYVNSEKDGVQIEAALQWCVDAYSDNIFGFANNIRTVDGGTHIE 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+PDP F QTK KL ++ Sbjct: 300 GLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNT 359 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+S V + L +LE +P +I++K + A +AARRAR+L RRK VL+ ++L Sbjct: 360 EVRGIVDSLVGEALGEYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTL 419 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 PGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 479 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI LITALG GI + FD LRYH+I+IMTDADVDGAHIRTLLLTFF+R SL+ Sbjct: 480 NTEIQALITALGLGIKGEEFDDKNLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLVE 539 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLR 588 G++YI PPLY + RGK+ Y +E L+ + + + I+ F ++ K Sbjct: 540 GGYIYIACPPLYKVERGKNHTYCYNEADLKTTIEGFGEKANFTIQRFKGLGEMMPKQLWE 599 Query: 589 NFIDDALKIDKLIK 602 +D + ++ K ++ Sbjct: 600 TTMDPSTRMMKRVE 613 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 131/330 (39%), Gaps = 35/330 (10%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 +D+++ G +IR L ++P G + + GI + + + Sbjct: 322 SDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLVGEALGEYLEFNP 381 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 382 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIYIVEG 441 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659 +G + ++ LN K + ++ Sbjct: 442 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDD 501 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKI 714 ++ RI + ++G+ I + + + + E L + G Sbjct: 502 KNLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKSLVEGGYIYIACPPLYKVERGKNH 559 Query: 715 K-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 L TI G K ++QR+KGLGEM QLWETT++P TR + RV+I DA++ Sbjct: 560 TYCYNEADLKTTIEGFGEKANFTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEIADAAE 619 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALD 802 AD +F+ LMGD+V PRREFI+ + + LD Sbjct: 620 ADRIFTILMGDKVAPRREFIETH--SAELD 647 >gi|254430578|ref|ZP_05044281.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001] gi|197625031|gb|EDY37590.1| DNA gyrase, B subunit [Cyanobium sp. PCC 7001] Length = 652 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 291/650 (44%), Positives = 402/650 (61%), Gaps = 16/650 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSEATKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V LN DGSC VSDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDQILVVLNEDGSCAVSDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS W+++ + R ++ F G L TGT V F P S Sbjct: 120 LHGVGVSVVNALSEWVQVTVYRHDQVHTQRFERGAAIGSLASAPGEKGRTGTTVCFKPDS 179 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAF 232 +IF+ F+Y TL RLREL++LN V+I D+R EP E FY+GGI+ + Sbjct: 180 EIFTGGISFDYATLSSRLRELAYLNGGVRIVFRDERQSARNAAGEPHEDIYFYEGGIKEY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291 V+Y++ K PL I + ++ + ++ A++W D Y +++L F NNI DGGTH+ G Sbjct: 240 VAYMNAEKDPLHPDIIYVNAEKEGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 L++ LTR + ++ +K K ++ G++ REG T+VLS+K+P+P F QTK KL ++E Sbjct: 300 LKTVLTRTLNAFAKKRGKRKDADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTE 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +V++ V + L +LE +P +I++K + A +AARRAR+L RRK VL+ ++LP Sbjct: 360 VRGIVDTLVGEALGEFLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI LITALG GI + FD LRYH+I+IMTDADVDGAHIRTL+LTFFFR +L+ Sbjct: 480 TEIQALITALGLGIKGEDFDEKNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEG 539 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590 G++YI PPLY + RGK+ Y +E L+ + + G + L Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEGDLKKTIESFGEKANYTIQRFKGLGEMMPQQLWET 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 +D + + +E I + + + + A Sbjct: 600 -----TMDPATRMMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAE 644 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 125/328 (38%), Gaps = 31/328 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 DA++ G +IR L ++P G + + GI + + + Sbjct: 321 ADANLAGENIREGLTAVLSVKVPEPEFEGQTKTKLGNTEVRGIVDTLVGEALGEFLEFNP 380 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 381 SVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 440 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINN 659 +G + ++ LN K + + Sbjct: 441 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEDFDE 500 Query: 660 SDILVKRIA----RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ RI V + F F + + I + + + Sbjct: 501 KNLRYHRIVIMTDADVDGAHIRTLILTFFFRYQKALVEGGYIYIACPPLYKVERGKNHTY 560 Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L TI S G K ++QR+KGLGEM QLWETT++P TR + RV+I DA +AD Sbjct: 561 CYNEGDLKKTIESFGEKANYTIQRFKGLGEMMPQQLWETTMDPATRMMKRVEIEDALEAD 620 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMGD+V PRREFI+ + + LD Sbjct: 621 RIFTILMGDKVAPRREFIETH--SAELD 646 >gi|169235747|ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium salinarum R1] gi|167726813|emb|CAP13599.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium salinarum R1] Length = 637 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 391/591 (66%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD S Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSDQ---SEYSAGQIQVLEGLEAVQKRPAMYIGSTDA-RGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTL+ DGS +V+D+GRGIP H+E A EVI+T LHAGGKF+ KSY+VSGGL Sbjct: 57 CDRIDVTLHDDGSVSVTDDGRGIPVATHEEYDRPAVEVILTVLHAGGKFDAKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L + + R+G Y F G L G + +D+GT + F P S+ Sbjct: 117 HGVGVSVVNALSERLAVEVSRDGARYREQFERGEPVTDLQHVGDS-DDSGTLIRFRPDSE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++ TL++RLREL+FLNS V+I+L D+R EP + T Y+GGI FV YL+ + Sbjct: 176 IFETTAYDFSTLENRLRELAFLNSGVEITLTDERGDEPTQSTFEYEGGIREFVEYLNETR 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L I QG D IS+++AM+ ++ + F NNI ++GGTHL+G ++ALTR + Sbjct: 236 NALHDDVIYFQGEDDGISVEIAMQASEDVQSSTHAFANNINTREGGTHLTGFKTALTRTV 295 Query: 301 TSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y + + ++ GDD REG T+V+S+K PDP+F QTK KL +SEVR +VE Sbjct: 296 NDYANDNNLLSELDGENLTGDDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVERA 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VNDGL + EE+P AK +V+ ++A+ R AA++A +LTRRK L SLPGKLADC Sbjct: 356 VNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKAEELTRRKSALGSTSLPGKLADCQS 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P+ +ELF+VEGDSAGGSAKQGR+ QAILPL GKILNVE+ R D++L E+ +IT Sbjct: 416 KAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGGKILNVEKHRLDRILEHDELRHIIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D FDI++LRY II+MTDADVDGAHIRTLLLTFF+R M L+ G++Y +P Sbjct: 476 ALGTGIG-DEFDIDELRYENIIMMTDADVDGAHIRTLLLTFFYRHMKPLLEAGYVYAAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589 PLY I E E + Q + G ++ L + Sbjct: 535 PLYRIRYRGKTYDAMTEADRERIVEEQCNGNPTQVQRFKGLGEMNPQQLWD 585 Score = 149 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +L + + + + + ++ V + Sbjct: 453 ILNVEKHRLDRILEHDELRHIITALGTGIGDEFDIDELRYENIIMMTDADVDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F + + + + + + G + I G +QR Sbjct: 513 LTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGKTYDAMTEADR-ERIVEEQCNGNPTQVQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +KGLGEMN QLW+TT++P+ R L R+ + DA+ AD +FS LMGD VEPR++FIQE + Sbjct: 572 FKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAADKMFSVLMGDAVEPRKQFIQERAGD 631 Query: 799 SA-LDI 803 + +DI Sbjct: 632 AEWVDI 637 >gi|315187334|gb|EFU21090.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6578] Length = 635 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 288/585 (49%), Positives = 395/585 (67%), Gaps = 7/585 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A+ IQ+L+GL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G I V + Sbjct: 2 SYTAEQIQVLRGLEPVRKRPGMYIGST-GEEGLHHLVYEVVDNSIDEALAGVCSRIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 TV+D+GRGIP DLH EE +SA E++MTRLHAGGKF++K+YKVSGGLHGVGVSVV Sbjct: 61 EPGNVVTVTDDGRGIPVDLHPEEKVSALELVMTRLHAGGKFDKKTYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS W ++ + R+G I+ + G+ P+ V G T F P ++IF +F+ Sbjct: 121 NALSEWCEVEVHRDGKIHVQRYQRGVPLGPVEVRGRTDRTG-TTTRFKPDAEIFETTEFS 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L RLREL+FLN ++I + D R+ +E Y+GG+ FV+YL++++ L + PI Sbjct: 180 FDILSQRLRELAFLNKGIEIVIRDLRTKRVKEHVFKYEGGLREFVAYLNKNRTSLQKEPI 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 +G+RD++ I+ A+ +ND Y E F NNI K+GGTH+ G RSALTR + ++S Sbjct: 240 YFEGARDHVEIECAIEYNDSYTETFFSFVNNINTKEGGTHVVGFRSALTRCLNDLFKQSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 +KK ++ GDD REG T+VLSIK+P+P+F QTK KL +S+V+ +VESFV + L A Sbjct: 300 FAKKLDDTLSGDDVREGLTAVLSIKVPEPQFEGQTKTKLGNSDVKGIVESFVYEQLQAHF 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 HP + + I++KV+ A+ R AAR+AR+L RRK VL+ LPGKLADC E+DP K E+F Sbjct: 360 ARHPKDGEAILEKVVQAARARIAARKARELARRKSVLESMDLPGKLADCIEKDPAKCEIF 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAKQGR RE QAILPL GK+LNVE+ R +K+L++ ++ +I +LGTGIG Sbjct: 420 IVEGDSAGGSAKQGRDREFQAILPLWGKMLNVEKTRMEKVLTNDKLYPIIASLGTGIG-T 478 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI++LRYHK+IIM DADVDG+HIRTLLLTFF+R M L+ G +YI PPLY + Sbjct: 479 EFDISRLRYHKVIIMADADVDGSHIRTLLLTFFYRYMKELVERGHVYIAMPPLYKVWVKN 538 Query: 549 SLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589 ++Y +E + + E G ++ L Sbjct: 539 EVEYAYTDEERDRILERFAKKYKKDEINVQRYKGLGEMNPEQLWE 583 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 5/188 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + + S ++ V + Sbjct: 448 MLNVEKTRMEKVLTNDKLYPIIASLGTGIGTEFDISRLRYHKVIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK----GISM 736 F + + + + + + + + +K I++ Sbjct: 508 LTFFYRYMKELVERGHVYIAMPPLYKVWVKNEVEYAYTDEERDRILERFAKKYKKDEINV 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+NP TR+++++++ DA +A+++F+ LMGD+V PRR+FI+EN+ Sbjct: 568 QRYKGLGEMNPEQLWETTMNPATRNIIQIRVEDAVEAEEVFTTLMGDQVAPRRKFIEENA 627 Query: 797 LPS-ALDI 803 L LD+ Sbjct: 628 LFVTNLDV 635 >gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145] gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145] Length = 652 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 288/632 (45%), Positives = 406/632 (64%), Gaps = 17/632 (2%) Query: 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ I +NS+Y AD+IQ+L+GL+AV+KRP+MYIGDT G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSEAIEKNSNYSADNIQVLEGLEAVRKRPAMYIGDT-GVKGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT++ + S TV DNGRGIPT ++K+E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 YCTDILVTIHKNNSITVEDNGRGIPTGINKKENKSALEIVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + + REG I+ + G + V G + + TGT TF P Sbjct: 120 LHGVGVSCVNALSTHVITVVHREGKIFTQEYERGKPLFDVKVIGES-DRTGTIQTFQPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234 +IF+ + +DTL RLREL+FLN +++ L D+R + + +GG+ FV+ Sbjct: 179 EIFTQTTEYRFDTLAGRLRELAFLNKGIRLVLTDEREVKEDGSFLSEEFYSEGGLREFVT 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD + PL+ I I+G ++ I ++LA +N+ Y+EN+ + NNI +GG+H++G R Sbjct: 239 FLDSTRTPLIPDAIYIEGEKNGIPVELAFTYNNSYNENIHSYVNNINTIEGGSHVAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + SY EKS K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKSYAEKSGLLKNLKVEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNTEVTG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEE+P EAK+IV KV+ A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDIAVGEALGNFLEENPKEAKLIVNKVILAATARAAARKAREMVQRKNVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ +DP ELFLVEGDSAGG+AKQGR+R+ QAILPL+GKILNVE+A K+ + EI Sbjct: 419 ADCANKDPHVCELFLVEGDSAGGTAKQGRNRDFQAILPLKGKILNVEKAMEHKIYENDEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG + KLRYHK+IIMTDADVDG+HI TL+LTFFFR M LI Sbjct: 479 KNIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSHITTLILTFFFRYMKQLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +YI PPLY + +GK +Y ++ + + + + I + Sbjct: 539 AGNIYIAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGK-----EDSVHIQRYKGLGE 593 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + + + IE A + Sbjct: 594 MNAEQLWETTLNPETRTLKRATIESAAEADRI 625 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 11/192 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E E + ++ N + + EK + ++ V Sbjct: 461 ILNVEKAMEHKIYENDEIKNIFTALGVSIGTAEDEKELNLEKLRYHKVIIMTDADVDGSH 520 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--TGP--CSLLDTIFSIGR 731 + F F + I + I L + G + + + + + G+ Sbjct: 521 ITTLILTFFFRYMKQLIEAGNIY-IAAPPLYQVKKGKEFEYCWNDVQRDAAVQRLKGGGK 579 Query: 732 -KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 + +QRYKGLGEMNA QLWETTLNP+TR+L R I A++AD +FS LMGDEV PRRE Sbjct: 580 EDSVHIQRYKGLGEMNAEQLWETTLNPETRTLKRATIESAAEADRIFSMLMGDEVAPRRE 639 Query: 791 FIQENSLPSALD 802 FI++N+ + +D Sbjct: 640 FIEKNARYAKID 651 >gi|253582585|ref|ZP_04859806.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] gi|251835455|gb|EES63995.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] Length = 635 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 269/585 (45%), Positives = 383/585 (65%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y A++I +L+GL+AV+KRP MYIG T E GLHH+++E++DNA+DE+L GY D I V Sbjct: 2 SNNYQAENITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNAVDEALAGYCDKIVV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + D V DNGRGIP +H + SA E+++T LHAGGKF +YKVSGGLHGVGVS Sbjct: 61 NILPDNIIEVIDNGRGIPVGIHPKYNKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W + +K +G I+ + G+ + + G + GT V F +IF Sbjct: 121 VVNALSLWTDVTVKTDGKIWYQKYNRGVPEEDVKEIGVTT-EHGTTVRFKADHEIFETLI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++Y+TL++RL+EL++LN ++I L D R ++ ++GGI F+ + + L+ Sbjct: 180 YDYNTLKNRLKELAYLNKGLEIHLSDSRKEPYKKEEFKFEGGIVDFLKEITEETEKLIPE 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI + G DN+++D+A + E + F NNI +GGTH+SG R+ALTR I + Sbjct: 240 PIYMTGEVDNVAVDIAFLYTVNQSEIIYSFVNNINTHEGGTHVSGFRTALTRVINDVGKA 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ + G+D REG T+++S+K+P P+F QTK KL +SEV +V + V L Sbjct: 300 QGYLKEKDGKLQGNDIREGVTAIVSVKVPQPQFEGQTKTKLGNSEVTGIVSTLVGTNLKI 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 LE++P + KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADCS ++P + E Sbjct: 360 VLEDNPNDTKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCSSKNPDECE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR R +QAILPLRGKILNVE+A K L + E+ +ITA GT IG Sbjct: 420 IYIVEGDSAGGSAKQGRDRSHQAILPLRGKILNVEKAGLHKSLENNEVRAMITAFGTSIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 DSF+I KLRY KII+MTDADVDGAHIRTLLLTF +R M LI+NG +YI +PPLY IT Sbjct: 480 -DSFNIEKLRYGKIILMTDADVDGAHIRTLLLTFIYRFMVDLIYNGNVYIAQPPLYKITT 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 GK ++Y + L++ ++ G ++ L Sbjct: 539 GKQIRYAYSDRELKEITDVFEGDDKKYTLQRYKGLGEMNPEQLWE 583 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 1/73 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEMN QLWETT+NPDTR+LL+V I DA AD LF +LMGD+V+PRREF Sbjct: 563 KKYTLQRYKGLGEMNPEQLWETTMNPDTRTLLQVTIDDARAADMLFDKLMGDKVDPRREF 622 Query: 792 IQENSLPS-ALDI 803 I+EN++ LDI Sbjct: 623 IEENAVYVKNLDI 635 >gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916] gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916] Length = 655 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 286/653 (43%), Positives = 402/653 (61%), Gaps = 19/653 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEASKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V L DGS +V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCSEIQVVLAEDGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGKVHRQRFERGAAIGSLRSEEQPAEENGLTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK------RSPEPREITMFYKGGI 229 P IF+ F+Y TL RLREL++LN V+I D+ EP E FY+GGI Sbjct: 180 PDIQIFTGGIVFDYATLAARLRELAYLNGGVRIVFRDEREAARTPEGEPHEEIYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y+++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNKEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E+ L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPEKANYNIQRFKGLGEMMPAQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 +D + + +E I + + + + A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAE 647 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 11/179 (6%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694 +K+ A + + D+ R R V ++G+ I + + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536 Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + E L + G L T+ + K ++QR+KGLGEM Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEQDLQKTLAAFPEKANYNIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 +QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S + LDI Sbjct: 597 AQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAELDMTNLDI 655 >gi|237741012|ref|ZP_04571493.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13] gi|229431056|gb|EEO41268.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13] Length = 635 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 265/584 (45%), Positives = 383/584 (65%), Gaps = 5/584 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY D I V + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGLHGVGVSVV Sbjct: 61 LPDNIIEVIDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDF 187 NALS WL++ +++ G I+ + G + + + G+ N+ GT V F ++IF + Sbjct: 121 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIIGACDVNEHGTIVRFKADAEIFETLIY 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + +++ P Sbjct: 181 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKDDTTIIEKP 240 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ I + Sbjct: 241 FYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 300 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++G+D REG ++S K+P P+F QTK KL +SEV +V + V++ L + Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 360 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LE++P K+I++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ + ++ E+ Sbjct: 361 LEDNPNITKVIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++TA GT IG+ Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI PPLY + G Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASG 539 Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 K + Y ++ L++ L + + G ++ L Sbjct: 540 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 583 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I++ + + + + L Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 551 Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF +L Sbjct: 552 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRREFI+E++ +DI Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635 >gi|256846674|ref|ZP_05552130.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2] gi|294784381|ref|ZP_06749672.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27] gi|256717894|gb|EEU31451.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2] gi|294487953|gb|EFG35308.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27] Length = 639 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 266/584 (45%), Positives = 382/584 (65%), Gaps = 5/584 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY D I V + Sbjct: 6 SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 64 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGLHGVGVSVV Sbjct: 65 LPDNIIEVIDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 124 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187 NALS WL++ +++ G I+ + G + + V G+ ++ GT V F +IF + Sbjct: 125 NALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKVIGTCDESEHGTIVRFKADGEIFETLIY 184 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + +++ P Sbjct: 185 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKDDTTIIEKP 244 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ I + Sbjct: 245 FYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 304 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++G+D REG ++S K+P P+F QTK KL +SEV +V + V++ L + Sbjct: 305 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 364 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ + ++ E+ Sbjct: 365 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 424 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++TA GT IG+ Sbjct: 425 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 484 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI PPLY + G Sbjct: 485 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASG 543 Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 K + Y ++ L++ L + + G ++ L Sbjct: 544 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I++ + + + + L Sbjct: 496 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 555 Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF +L Sbjct: 556 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 615 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRREFI+E++ +DI Sbjct: 616 MGDKVEPRREFIEEHAEYVKNIDI 639 >gi|311746751|ref|ZP_07720536.1| DNA gyrase, B subunit [Algoriphagus sp. PR1] gi|126578430|gb|EAZ82594.1| DNA gyrase, B subunit [Algoriphagus sp. PR1] Length = 652 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 294/603 (48%), Positives = 395/603 (65%), Gaps = 16/603 (2%) Query: 1 MSDNIQNS--SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ Y A +IQ+L+GL+AV+KRP+MYIGD G GLHH+I+EV+DN++DE+L Sbjct: 1 MSEEKAKKPAGYGAGNIQVLEGLEAVRKRPAMYIGDV-GVKGLHHLIWEVVDNSVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ D I VT+N+D S TV DNGRGIPTD H++E SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GHCDTIHVTVNVDNSITVEDNGRGIPTDWHEKEQKSALEVVLTVLHAGGKFDKDTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS+ LK + R+G I E F G+ P G + GT + F P Sbjct: 120 GLHGVGVSCVNALSTDLKATVFRDGVITEQEFKIGVPQYPAKEVGKT-DKRGTMIHFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVS 234 IF+ ++ Y+T+ +RLRE++FLN+ V+I L D + R + +GG+ FV Sbjct: 179 DSIFTHTEYKYETIANRLREMAFLNAGVRIFLKDLREIEEDGNARTDEFYSEGGLVEFVQ 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YLD ++ +++ PI I+G +++ + +AM +N Y ENV+ + N I +GGTH++G R Sbjct: 239 YLDNTREKIIEEPIYIEGEFNSVPVQVAMNYNTSYSENVVSYVNTINTYEGGTHVTGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + SY +KS K K V GDD REG T+V+S+K+ +P+F QTK KL +SEV Sbjct: 299 ALTRTLKSYADKSGMLDKLKLEVSGDDFREGLTAVISVKVAEPQFEGQTKTKLGNSEVVG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+S V++ L +WLEEHP EAKIIV KV+ A+ R AAR+AR++ +RK VL LPGKL Sbjct: 359 AVDSAVSETLQSWLEEHPKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ DP EL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+A K+ + EI Sbjct: 419 ADCANSDPTVCELYLVEGDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEI 478 Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++TALG G + D LRYHKIIIMTDAD+DG+HIRTL+LT FFR M +LI Sbjct: 479 KNILTALGVKFGTVNDDKELDLSNLRYHKIIIMTDADIDGSHIRTLILTLFFRYMRTLIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI----ELFCDSKGVISKND 586 GF+YI PPLY + RGK +Y EE + + + G ++ Sbjct: 539 KGFIYIALPPLYLLKRGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEMNPEQ 598 Query: 587 LRN 589 L Sbjct: 599 LWT 601 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 16/278 (5%) Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 P I GK + + + + + + + + ++ Sbjct: 376 PKEAKIIVGKVVLAAQARHAARKAREMVQRKNVLGGGGLPGKLADCANSDPTVCELYLVE 435 Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEK-SEKSWH 654 + QA++ + N E E + ++ N L + K + Sbjct: 436 GDSAGGSAKQGRDRDFQAILPLKGKILNVEKAHEHKIYDNDEIKNILTALGVKFGTVNDD 495 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSF----GSKYKRIFSNR-IEENYLTILSLIC 709 ++ S++ +I + ++GS I + +Y R + L L L+ Sbjct: 496 KELDLSNLRYHKII--IMTDADIDGSHIRTLILTLFFRYMRTLIEKGFIYIALPPLYLLK 553 Query: 710 NGDKIKITGPCSLLDTIFSI-GRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 G + + + G + +QRYKGLGEMN QLW TT++P+ R++ + Sbjct: 554 RGKDERYCWTEEERKLLTKEMAKDGKEDSVGIQRYKGLGEMNPEQLWTTTMDPNVRTIKQ 613 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 V I A++AD LFS LMGDEV PRREFI++N+ + +D Sbjct: 614 VTIDSAAEADHLFSMLMGDEVAPRREFIEKNAKYAKID 651 >gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631] gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631] Length = 632 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 284/637 (44%), Positives = 407/637 (63%), Gaps = 17/637 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y A++I++L + AV+KRP MY+G T G G HH+++E++DN+IDE+L GY + I VT Sbjct: 11 SDYTAEAIEVLDDIQAVRKRPGMYVGST-GSRGFHHLLWEIVDNSIDEALAGYCNRIVVT 69 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS +V DNGRGIP + H A E++MT+LHAGGKF++K+YKVSGGLHGVG+SV Sbjct: 70 LHKDGSASVEDNGRGIPVEEHPIFKKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 129 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++ +KR G IY + G PL V G +TGT++ F P +IF V++F Sbjct: 130 VNALSEWLEVWVKRNGKIYYQRYERGKPVTPLKVVGETK-ETGTKIRFKPDPEIFEVKEF 188 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +YD + RLREL+FLN ++I LID+R+ + + + GI FV YL++ K ++ Sbjct: 189 DYDVVAERLRELAFLNKGLRIKLIDERTGKV--KEFYSEEGIVGFVKYLNKG-KDVITDV 245 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I G ++ I++++A ++ + EN+L F NNI +GGTH+SG R+ LTR I Y +K Sbjct: 246 VYISGEKNGINVEIAFQFTNEDFENLLAFANNIHTIEGGTHVSGFRAGLTRAINEYGKKH 305 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K + G D REG T+VLS+K+P+P+F QTK KL +S+V++VVES V + W Sbjct: 306 ---VKKFTPISGSDIREGLTAVLSVKVPEPQFEGQTKTKLTNSDVKTVVESLVYNNFLRW 362 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEEHP EA+ I++K L A R+ ARRAR+L +RK + +LPGKLADCS ++ ++ EL Sbjct: 363 LEEHPSEAQRIIEKCLLAMKAREMARRARELVKRKAEI-SLTLPGKLADCSSKNVEEREL 421 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEG+SAGGSAKQ R R QA+LP+RGKI+NVE+A + L ++EI + +A+G GIG+ Sbjct: 422 FIVEGESAGGSAKQARDRRFQAVLPIRGKIINVEKAGMLRALKNEEIKAIASAIGGGIGK 481 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FD++K+RY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +YI PPLY + +G Sbjct: 482 D-FDLSKVRYGKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGMVYIALPPLYRVKKG 540 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 + YV E+ L D L + + G ++ L ++ + Sbjct: 541 DKVYYVYSEKELRDVLKK--IGKAEVQRFKGLGEMNPEQLWETA-----MNPKTRKLVKV 593 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + + E+ E + + N Sbjct: 594 TIEDALIAEKMFRILMGENVDERKEFILNHAKEVKNL 630 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 3/184 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + I K + S ++ V + Sbjct: 451 IINVEKAGMLRALKNEEIKAIASAIGGGIGKDFDLSKVRYGKIIIMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + + L D + IG+ +QR+K Sbjct: 511 LTFFYRYMRPLIEAGMVYIALPPLYRVKKGDKVYYVYSEKELRDVLKKIGK--AEVQRFK 568 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWET +NP TR L++V I DA A+ +F LMG+ V+ R+EFI ++ Sbjct: 569 GLGEMNPEQLWETAMNPKTRKLVKVTIEDALIAEKMFRILMGENVDERKEFILNHAKEVK 628 Query: 800 ALDI 803 LD+ Sbjct: 629 NLDV 632 >gi|237743164|ref|ZP_04573645.1| DNA gyrase subunit B [Fusobacterium sp. 7_1] gi|256027571|ref|ZP_05441405.1| DNA gyrase subunit B [Fusobacterium sp. D11] gi|289765530|ref|ZP_06524908.1| subunit B [Fusobacterium sp. D11] gi|229433460|gb|EEO43672.1| DNA gyrase subunit B [Fusobacterium sp. 7_1] gi|289717085|gb|EFD81097.1| subunit B [Fusobacterium sp. D11] Length = 635 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 264/584 (45%), Positives = 381/584 (65%), Gaps = 5/584 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY D I V + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGLHGVGVSVV Sbjct: 61 LPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187 NALS WL++ +++ G ++ + G + + V G+ N+ GT V F +IF + Sbjct: 121 NALSEWLEVEVRKNGTVHYQKYHRGKPEEDVKVIGTCDENEHGTTVRFKADGEIFETLVY 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY TL +RL+EL++LN + I L D R E +E + GGI F++ + + + +++ P Sbjct: 181 NYFTLSNRLKELAYLNKGLTIILSDLRKDEKKEEIYKFDGGILDFLNEIVKDETTIIEKP 240 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + +DN+ +D+ + +E + F N+I +GGTH+ G R+ALT+ I + Sbjct: 241 FFVSAEQDNVGVDVTFTYTTSQNEVIYSFVNDINTHEGGTHVQGFRTALTKVINDVGKAQ 300 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++G+D REG ++S K+P P+F QTK KL +SEV +V + V++ L + Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIISTKIPQPQFEGQTKGKLGNSEVSGIVNTVVSNSLKIF 360 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ + ++ E+ Sbjct: 361 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++TA GT IG+ Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI PPLY + G Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACPPLYKVAAG 539 Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 K + Y ++ L++ L + + G ++ L Sbjct: 540 KQIIYAYNDLELKNILGQMNQENKKYTIQRYKGLGEMNPEQLWE 583 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 5/264 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I+ + + + I L Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRHMIDLIYGGNVYIACPPLYKVAAGKQIIYAYNDLEL 551 Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF +L Sbjct: 552 KNILGQMNQENKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRREFI+E++ +DI Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635 >gi|5817861|gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholeplasma laidlawii] Length = 615 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 291/600 (48%), Positives = 398/600 (66%), Gaps = 6/600 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N NS Y AD+IQIL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD Sbjct: 3 NNNNSHYTADNIQILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALCGYADE 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 IT+ + V+DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGV Sbjct: 62 ITIEILKGEVIRVTDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVN LS W + I ++G IYE + GI L V GS + +GT ++F IF+ Sbjct: 122 GASVVNGLSEWFVVEIHKDGTIYEQKYERGIPAYDLKVKGST-DKSGTIISFQADPLIFT 180 Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL+ R+++L+FLN ++++LID R E + + Y+GGI +V +L++ K Sbjct: 181 ETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRFEENKSESFHYEGGITEYVKFLNQSKSK 240 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I I +D I+++LAM++ D Y N+ FTNNI +GG H G + AL+ I+ Sbjct: 241 IHNDIIYIDKEQDGITVELAMQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALSAVISK 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + S+ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ Sbjct: 301 YADDLKMK--KDDSISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + +L E+P +AK IV+KVL A+ R AAR+A+DLTRRK LD KLADC +DP Sbjct: 359 AIERFLMENPAQAKAIVEKVLLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +KSE+++VEGDSAGGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+G Sbjct: 419 EKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D FDI K RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY Sbjct: 479 TGI-SDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I+ G++ QY +E+ L + L I+ + + ++ +D A + IK Sbjct: 538 KISWGRNFQYRYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 597 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + V ++G+ I + + R I+ Y L Sbjct: 479 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 538 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I G + L+ + S+QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 539 ISWGRNFQYRYNEQELNELLKTIETKPSIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 598 Query: 768 TDASQADDLFSRLMGD 783 DA +AD +FS LMG+ Sbjct: 599 EDAIEADQVFSMLMGE 614 >gi|34763292|ref|ZP_00144250.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887040|gb|EAA24153.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 639 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 267/592 (45%), Positives = 384/592 (64%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N+ SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + + V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CDKIEVKILPENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++ G I+ + G + + + GS N+ GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGTIHYQKYHRGKPEEDVKIVGSCDINEHGTIVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +NY TL +RL+EL++LN + I L D R E +E + GGI F++ + + Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG ++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG+ FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI P Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY + GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVASGKQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I++ + + + + L Sbjct: 496 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVASGKQIVYAYNDLEL 555 Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF +L Sbjct: 556 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 615 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRREFI+E++ +DI Sbjct: 616 MGDKVEPRREFIEEHAEYVKNIDI 639 >gi|303240062|ref|ZP_07326583.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2] gi|302592331|gb|EFL62058.1| DNA gyrase, B subunit [Acetivibrio cellulolyticus CD2] Length = 641 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 294/647 (45%), Positives = 416/647 (64%), Gaps = 11/647 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N N SY+ +IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G Sbjct: 1 MSENANLNLSYNESNIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIMDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I +T+N D S T DNGRGIP +H + GI EV+ T LHAGGKF + Y VSGG Sbjct: 60 YCTEIEITINPDNSITNIDNGRGIPVGIHPKMGIPTVEVVHTILHAGGKFGGEGYTVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS +L++ + R+GNIY+ + G + L V TGT+ TF P S Sbjct: 120 LHGVGASVVNALSEYLEVEVYRDGNIYKQRYERGNVATKLEVI-GTTEKTGTKTTFKPDS 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F++D L +R REL+FLN + I+LIDKR EP + Y+GGI +FV Y++R+ Sbjct: 179 LIFEEMEFSFDILLNRFRELAFLNKGLMITLIDKRPEEPIVKKLHYEGGIISFVEYMNRN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + PI I S+D +++++M++ND Y EN+ F NNI +GGTHL+G ++A+T+ Sbjct: 239 KGVIQEHPIYIDCSKDGSNVEISMQYNDTYVENIFSFANNIATTEGGTHLTGFKTAITKV 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K K + +++ G+D REG T+V+S+K+ +P+F QTK KL +SE+RS+VE Sbjct: 299 FNDYARKYNYLKDNDKNLAGEDIREGLTAVISVKLQEPQFEGQTKTKLGNSEIRSLVEFT 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+++LEE+P K I+ K L A+ R+AAR+ARDLTRRK L+ +LPGKLADCSE Sbjct: 359 VGEKLASFLEENPSVTKTILDKCLTAARAREAARKARDLTRRKSALETTTLPGKLADCSE 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP E+++VEGDSAGGSAKQGR R+ QAILPL GK+LNVE++R DK+ ++++ +IT Sbjct: 419 KDPSLCEIYIVEGDSAGGSAKQGRDRKFQAILPLWGKMLNVEKSRIDKVYDNEKLLPVIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG IG D FD+ KLRYHKIIIM DADVDG HIRTLLLTF FR M L+ G++YI +P Sbjct: 479 ALGASIG-DDFDVEKLRYHKIIIMADADVDGQHIRTLLLTFMFRYMKPLVEGGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL--SEEIELFCDSKGVISKNDLRNFIDDALKI 597 PL+ I +GK Y +E+ +++++ + E G ++ L + Sbjct: 538 PLFKIAKGKEEGYAYNEKQVDNFINEKGWKKDECSIQRYKGLGEMNPEQLWET-----TM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + I I + + + + + N Sbjct: 593 NPETRTMLRVELSDAIAADEIFTILMGDKVEPRKEFIQTHAKTVTNL 639 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + + ++ V Q + Sbjct: 456 MLNVEKSRIDKVYDNEKLLPVITALGASIGDDFDVEKLRYHKIIIMADADVDGQHIRTLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F F + + + + ++ + + I G K S+QR Sbjct: 516 LTFMFRYMKPLVEGGYVYIAQPPLFKIAKGKEEGYAYNEKQVDNFINEKGWKKDECSIQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+TR++LRV+++DA AD++F+ LMGD+VEPR+EFIQ ++ Sbjct: 576 YKGLGEMNPEQLWETTMNPETRTMLRVELSDAIAADEIFTILMGDKVEPRKEFIQTHAKT 635 Query: 799 S-ALDI 803 LDI Sbjct: 636 VTNLDI 641 >gi|256545954|ref|ZP_05473309.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170] gi|256398376|gb|EEU11998.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170] Length = 634 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 281/585 (48%), Positives = 404/585 (69%), Gaps = 5/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++NS Y+A +I++LKGL+ V+ RP MYIG T E GLHH++YEV+DN++DE+L G D I Sbjct: 1 MENSEYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++++ + TV D+G GIP + H + G S E ++T LHAGGKF+ K+YKVSGGLHGVG Sbjct: 60 KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L +KREG+I+ M+F G + L + G ++GT++TF +IF V Sbjct: 120 VSVVNALSEYLIAEVKREGHIHRMTFERGKPTSDLEIVGDTK-ESGTKITFKADPEIFDV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++ TL++R RE++FLN V+ LI + + EI Y GGI+ FV YL+R+K P+ Sbjct: 179 TVYDKKTLENRFREMAFLNKGVR--LIFEDKRDESEIEFKYDGGIKEFVEYLNRNKTPIF 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +++ I+++ ++ DGY EN+L F NNI +GGTHLSG RSALTR + Y Sbjct: 237 KEVPYFEGRQESTEIEISFQYTDGYSENILTFANNIYTLEGGTHLSGFRSALTRSVNDYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ GDD REG T+++S+K+ +P+F QTK KL +SEVR V++F ++ + Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LEE+P AK I++K L + R+AAR+ARDLTR++ +LD +LPGKLADC +D + Sbjct: 357 GNFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+ +EI ++ITA GTG Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG + FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 477 IGSE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDGGHIYIAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + GK +Y ++ L++ + + G ++ L Sbjct: 536 SSGKKERYCYTDKELDEIVKEWKVDNYKISRYKGLGEMNAEQLWE 580 Score = 149 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 14/181 (7%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---------VQEQFVLEGSSIFSFG 686 + L LN+ KS + G+ S+ + ++ G V + F + Sbjct: 455 ANLDRILNYEEIKSMITAFGTGIGSEFDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYR 514 Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEM 745 + I + + + LD I + + RYKGLGEM Sbjct: 515 YMKPLVDGGHIYIAQPPLYKISSGKKERYCYTDKE-LDEIVKEWKVDNYKISRYKGLGEM 573 Query: 746 NASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 NA QLWETT++P+ R LL+V K D FS LMG++VEPRREFI+EN+ LD Sbjct: 574 NAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLMGEKVEPRREFIEENAQYVENLD 633 Query: 803 I 803 + Sbjct: 634 V 634 >gi|148241191|ref|YP_001226348.1| DNA gyrase subunit B [Synechococcus sp. RCC307] gi|147849501|emb|CAK26995.1| DNA gyrase subunit B [Synechococcus sp. RCC307] Length = 657 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 282/568 (49%), Positives = 385/568 (67%), Gaps = 9/568 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G+ Sbjct: 8 SSSQVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGHC 66 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V L DGSC+V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGGLH Sbjct: 67 NTIDVCLRADGSCSVADNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGSGGYKVSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS W+++ + R+ ++ F G L TGT V F P +I Sbjct: 127 GVGVSVVNALSEWVEVTVHRQDKVHRQRFERGAPIGSLASEAGEKGRTGTSVCFKPDIEI 186 Query: 182 FSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------EPREITMFYKGGIEAFVS 234 F+ F+Y TL RLREL++LN V+I D+R +P E FY+GGI +V+ Sbjct: 187 FTGGISFDYATLSGRLRELAYLNGGVKIVFRDERPEAAGEDGQPHEEIYFYEGGIREYVN 246 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y++ K PL I + +D + ++ A++W D Y +++L F NNI DGGTH+ GL+ Sbjct: 247 YMNAEKDPLHPDIIYVNSEKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEGLK 306 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 + LTR + ++ K K ++ G++ REG T+VLS+K+PDP F QTK KL ++EVR Sbjct: 307 TVLTRTLNTFARKRGKRKDSDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVR 366 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V++ V + LS +LE HP +I++K + A +AARRAR+L RRK VL+ ++LPGK Sbjct: 367 GIVDTVVGEALSEYLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGK 426 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS RDP +SE+++VEGDSAGGSAKQGR R NQAILPLRGKILN+E+ K+ + E Sbjct: 427 LADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTE 486 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LITALG GI + FD++ LRYH+I+IMTDADVDGAHIRTL+LTFF+R L+ G+ Sbjct: 487 IQALITALGLGIKGEEFDVSNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRELVEGGY 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLED 561 +YI PPLY + RGK+ Y +E+ L+ Sbjct: 547 IYIACPPLYKVERGKNHTYCYNEQDLKK 574 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 32/332 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 +D ++ G +IR L ++P G + + GI + + + Sbjct: 326 SDGNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDTVVGEALSEYLEFHP 385 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 386 QVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 445 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662 +G + N ++ LN K + + D+ Sbjct: 446 DSAGGSAKQGRDRRNQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDV 505 Query: 663 LVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIF--SNRIEENYLTILSLICNGDKIK 715 R R V ++G+ I + F +Y+R I + + + Sbjct: 506 SNLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRELVEGGYIYIACPPLYKVERGKNHTY 565 Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L T+ G K ++QR+KGLGEM QLWETT++P TR++ RV+I DA+QAD Sbjct: 566 CYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPQQLWETTMDPTTRTMKRVEIEDAAQAD 625 Query: 775 DLFSRLMGDEVEPRREFIQENS--LP-SALDI 803 +F+ LMGD+V PRREFI+ +S L + LDI Sbjct: 626 RIFTILMGDKVAPRREFIETHSAELNLADLDI 657 >gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21] gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21] Length = 652 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 291/603 (48%), Positives = 401/603 (66%), Gaps = 16/603 (2%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ N S+Y AD+IQ+L+GL+AV+KRPSMYIGD G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSEENKNKSNYSADNIQVLEGLEAVRKRPSMYIGDV-GVKGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I V ++ D S TV DNGRGIPT ++K+E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 YCTDIHVIIHKDNSITVEDNGRGIPTGINKKENKSALEMVMTMLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ L + REG I++ + G + V G + TGT VTF P Sbjct: 120 LHGVGVSCVNALSTLLIAEVHREGKIFKQEYAQGKPLYDVKVIGET-DRTGTNVTFHPDP 178 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP----REITMFYKGGIEAFVS 234 IF++ ++YDTL RLREL++LN ++++L+D+R + R + +GG+ FV Sbjct: 179 SIFTMTTTYSYDTLAGRLRELAYLNKGIRLTLLDEREEQEDGALRHEEFYSEGGLSEFVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD +++PL+ PI ++G + I ++LA+++ND Y ENV + NNI +GGTH++G R Sbjct: 239 FLDGNRQPLIPDPIHVEGIKQGIPVELALQYNDTYSENVHSYVNNINTIEGGTHVAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + +Y +KS K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKAYADKSGLLKNLKVEITGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEE+P EAK IV+KV+ A+ R AAR+ARD+ +RK V+ + LPGKL Sbjct: 359 AVDVAVGEILGTYLEENPREAKAIVQKVIIAAQARAAARKARDMVQRKTVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ DP K E++LVEGDSAGG+AKQGR+RE QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 ADCANNDPAKCEIYLVEGDSAGGTAKQGRNREFQAILPLRGKILNVEKAMEHKIYENEEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG KLRYH+IIIMTDADVDG+HI TL+LTF+FR M LI Sbjct: 479 KNMFTALGVSIGTPEDAKALNLEKLRYHRIIIMTDADVDGSHITTLILTFYFRYMKELIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586 G++YI PPLY + +GK +Y +E + G ++ Sbjct: 539 RGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWD 601 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 9/124 (7%) Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPC----SLLDTIFSIGR-KGISMQRY 739 Y R IE Y+ L L+ G + + + + + G+ + +QRY Sbjct: 529 YFRYMKELIERGYVYIATPPLYLVKKGKEHEYAWNENQRLAAIQRLKGAGKEDSVHVQRY 588 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLW+TT+NP+TR+L +V I +A++ D +FS LMGDEV PRREFI+ N+ + Sbjct: 589 KGLGEMNAEQLWDTTMNPETRTLRQVSIENAAECDRVFSMLMGDEVAPRREFIERNAKYA 648 Query: 800 ALDI 803 +D+ Sbjct: 649 KIDV 652 >gi|332829228|gb|EGK01882.1| DNA gyrase, B subunit [Dysgonomonas gadei ATCC BAA-286] Length = 651 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 292/632 (46%), Positives = 398/632 (62%), Gaps = 18/632 (2%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M++ + SY A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MTEKQKMAGESYSAQNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT++ D S +V DNGRGIP D+ ++E SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCDDIKVTIHEDNSISVKDNGRGIPVDIMEKEKKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS+ L+ I ++GNIY + G + G D GT +TF P Sbjct: 120 GLHGVGVSCVNALSTHLRAEIHKQGNIYVQEYSCGKPLTAVEKIGETK-DNGTTITFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVS 234 IF+V ++ YDTL RLREL+FLN+ V++SL D K R + + G+E FV Sbjct: 179 DTIFTVTEYKYDTLASRLRELAFLNAGVRLSLTDLRQKKEDGTFRTDIFYSERGLEEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+D K+ L+ I I + + +++AM +N Y+ENV + NNI +GGTHL+G R Sbjct: 239 YIDASKEALIDDVIHIVTEKQGVPVEVAMTYNTSYNENVYSYVNNIHTIEGGTHLTGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 AL+R + Y + +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 ALSRTLKKYADDMKMLEKVKIEISGDDFREGLTAVVSIKVAEPQFEGQTKTKLGNNEVIG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEEHP EAKIIV+KV+ A+ R AAR+AR++ +RK L LPGKL Sbjct: 359 AVDQAVGEALGHFLEEHPKEAKIIVEKVILAATARAAARKAREMVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+L S EI Sbjct: 419 ADCSSKDASNCEIFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMPHKVLESDEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG D KLRYHK++IMTDADVDG+HI TL+LTFFFR M +L+ Sbjct: 479 KNIYTALGVSIGTDEDSKELNLEKLRYHKVVIMTDADVDGSHIATLILTFFFRHMKALLE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI PPLY +GK +Y D+ ++ +E + + + Sbjct: 539 KGYVYIATPPLYLCKKGKVEEYCWDDRQRRAFIDKYGDGDENSIHTQRYKGLGE------ 592 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ D + + + IE A + Sbjct: 593 MNAIQLWDTTMNPEHRTLRQVTIENAAEADHI 624 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 40/66 (60%), Positives = 55/66 (83%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++AD +FS LMG++V PRREFI+EN+ Sbjct: 585 QRYKGLGEMNAIQLWDTTMNPEHRTLRQVTIENAAEADHIFSMLMGEDVAPRREFIEENA 644 Query: 797 LPSALD 802 + +D Sbjct: 645 TYAKID 650 >gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17] gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae ATCC 33574] gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17] gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae ATCC 33574] Length = 656 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 274/649 (42%), Positives = 396/649 (61%), Gaps = 15/649 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N+ ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 1 MAENLNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCKNIEVTINEDNSITVQDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G GT F P Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETDRQ-GTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQI---SLIDKRSPEPREITMFYKGGIEAFVSYL 236 +F+ + +D + R+REL+FLN+ ++I L + RE + G++ FV Y+ Sbjct: 179 TVFTTTVYKWDIIASRMRELAFLNAGIRITLRDLRPDEEGKTREEVFHAEQGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + + I++A+ +N Y EN+ + NNI +GGTHL+G R+AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGVPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRVLKAYADNDAQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L+ +LEEHP+EAK I +KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 AGAVQQAVGEALNNYLEEHPVEAKKICEKVVLAATARIAARKARESVQRKSVMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I G LYI PPLY T K+ +Y E+ + ++ E + ++ ++ Sbjct: 539 VIEEGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGREDDKALHTQRYKGLGEM 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + + + E I + + + + Sbjct: 599 NPEQLWETTMDPATRLLKQVNIQNAAEADEIFSMLMGDDVEPRREFIEK 647 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 3/77 (3%) Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 GR K + QRYKGLGEMN QLWETT++P TR L +V I +A++AD++FS LMGD+V Sbjct: 579 EGREDDKALHTQRYKGLGEMNPEQLWETTMDPATRLLKQVNIQNAAEADEIFSMLMGDDV 638 Query: 786 EPRREFIQENSLPSALD 802 EPRREFI++N+ + +D Sbjct: 639 EPRREFIEKNATYANID 655 >gi|254302374|ref|ZP_04969732.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322566|gb|EDK87816.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 635 Score = 605 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 268/584 (45%), Positives = 383/584 (65%), Gaps = 5/584 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY D I V + Sbjct: 2 SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGYCDKIEVKI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGLHGVGVSVV Sbjct: 61 LPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQDF 187 NALS WL++ +++ G I+ + G + + + GS N+ GT V F +IF + Sbjct: 121 NALSEWLEVEVRKAGVIHYQKYHRGKPEEDVKIIGSCDENEHGTIVRFKADGEIFETLIY 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + +++ P Sbjct: 181 NYFTLSNRLKELAYLNKGLTITLSDLRKDEKKEETYKFDGGILDFLNEIVKEDTTIIEKP 240 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ I + Sbjct: 241 FYISSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKVINDVGKAQ 300 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++G+D REG ++S K+P P+F QTK KL +SEV +V + V++ L + Sbjct: 301 GLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTIVSNSLKIF 360 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ + ++ E+ Sbjct: 361 LEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEI 420 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++TA GT IG+ Sbjct: 421 FIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGE 480 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI+ G +YI PPLY ++ G Sbjct: 481 T-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVSSG 539 Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 K + Y ++ L++ L + + G ++ L Sbjct: 540 KQIVYAYNDLELKNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWE 583 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 5/264 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 374 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 433 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ S Sbjct: 434 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDISKLRYGK 491 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 ++ V + F + I++ + + + + L Sbjct: 492 IILMTDADVDGAHIRTLILTFLYRYMIDLIYAGNVYIACPPLYKVSSGKQIVYAYNDLEL 551 Query: 723 LDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF +L Sbjct: 552 KNVLGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFDKL 611 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRREFI+E++ +DI Sbjct: 612 MGDKVEPRREFIEEHAEYVKNIDI 635 >gi|150024625|ref|YP_001295451.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86] gi|149771166|emb|CAL42633.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86] Length = 647 Score = 605 bits (1560), Expect = e-170, Method: Composition-based stats. Identities = 278/599 (46%), Positives = 383/599 (63%), Gaps = 13/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD I+ +Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MSDEIKKDNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N DGS +V DNGRGIP +HK+EG+SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CDTIRVDINEDGSISVEDNGRGIPVGIHKKEGVSALEVVMTKIGAGGKFDKDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVGVSVVNALS+ L+ + +G IYE + G P+ G GT VTF P Sbjct: 120 HGVGVSVVNALSNHLRATVHSSDGKIYEQEYEKGKALYPVKQIGETT-KRGTIVTFYPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234 IF+ ++YDTL R+RELSFLN + I+ DKR + G++ ++ Sbjct: 179 SIFTQTIEYSYDTLSARMRELSFLNKGITITFTDKREKDKDGNFVSEIFHSTEGLKEYIR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YLD +++P++ I + + I +++A+ +N Y EN+ + NNI +GGTHL G R+ Sbjct: 239 YLDGNREPIIAHVISMDNDKGEIPVEVALIYNTSYTENIFSYVNNINTHEGGTHLQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y + S K K + GDD REG T+++S+K+ +P+F QTK KL + EV S Sbjct: 299 GLTRSLKKYADSSGMLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNREVVS 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V V D + +LEE+P +A+IIV+KV+ A+ R AA++AR++ +RK V+ LPGKL Sbjct: 359 PVSQAVGDMIENYLEENPNDARIIVQKVILAAQARHAAKKAREMVQRKTVMGGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 +DCSE+DP K E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 SDCSEQDPAKCEVFLVEGDSAGGTAKQGRDRAFQAILPLRGKILNVEKAMHHKVFENEEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG KLRYHK++IM DAD+DG+HI TL+LTFFFR M LI Sbjct: 479 RNIFTALGVTIGTAEDSKALNLEKLRYHKVVIMCDADIDGSHISTLILTFFFRFMKELIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI PPLY + +G +Y +E + + G ++ L + Sbjct: 539 QGHIYIATPPLYLVKKGNKKEYAWNEVQRDQ-ANERMGGSATIQRYKGLGEMNAEQLWD 596 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 56/68 (82%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMNA QLW+TTLNP+ R+L +V I ++AD +FS LMGDEV PRREFI++ Sbjct: 579 TIQRYKGLGEMNAEQLWDTTLNPEFRTLRQVNIDSLAEADRVFSMLMGDEVPPRREFIEK 638 Query: 795 NSLPSALD 802 N++ + +D Sbjct: 639 NAVYANID 646 >gi|167753648|ref|ZP_02425775.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216] gi|167658273|gb|EDS02403.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM 17216] Length = 652 Score = 605 bits (1560), Expect = e-170, Method: Composition-based stats. Identities = 288/604 (47%), Positives = 398/604 (65%), Gaps = 12/604 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y A +IQ+L+GL+AV+KRP+MYIGD GE GLHH++YEV+DN+IDE+L G+ Sbjct: 9 KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGHCTD 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV Sbjct: 68 IDVTINEDNSITVKDNGRGIPTDFHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVS VNALS+ L I R+G I+ S+ G +P+ V G +D GT +TF P IF+ Sbjct: 128 GVSCVNALSTLLIAEIHRDGKIFRQSYSKGAPTSPVEVIG-TCDDRGTTITFKPDGSIFT 186 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDR 238 ++ YD L +RLREL+FLN + ++L+DKR + E + + G++ FV YLD Sbjct: 187 LTTEYKYDILANRLRELAFLNKGIHLNLLDKRQRDENGEYVGDHFYSEEGLKEFVEYLDA 246 Query: 239 HK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + + + +S I I ++ + +++AM++ND + ENV + NNI +GGTHL+G R ALT Sbjct: 247 TRGQAITESIIYIDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRALT 306 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y E S K K + GDD REG T+V+S+K+ +P+F QTK KL + EV + V+ Sbjct: 307 RTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVAEPQFEGQTKTKLGNDEVSAAVD 366 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 ++ LS +LEE+P +AK IV+KV+ A+ R AAR AR++ +RK VL A LPGKLADC Sbjct: 367 QAMSTALSHYLEENPRDAKAIVQKVILAATARHAARHAREMVQRKTVLSGAGLPGKLADC 426 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S RD +E+F VEGDSAGG+AKQGR R QAI+PLRGKILN+E+A+ +M ++EI + Sbjct: 427 SSRDRSIAEIFFVEGDSAGGTAKQGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKNM 486 Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 TALG IG + KLRY KIIIMTDADVDG+HI TL+LTFFFR+M LI NG Sbjct: 487 FTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENGH 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI PPL+ + +G+ +Y E+ ++ ++ + + S ++ Sbjct: 547 VYIATPPLFLVKKGQQERYCWTEKERDEITAEMGKGVHVQRYKGLGEMNSHQLWETTMNP 606 Query: 594 ALKI 597 +I Sbjct: 607 DTRI 610 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 6/187 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + E+ K+ + D ++ V Sbjct: 466 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 525 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735 + F F K K + N L L+ G + + D I + KG+ Sbjct: 526 IATLMLTFFF-RKMKELIENGHVYIATPPLFLVKKGQQERYCWTEKERDEITAEMGKGVH 584 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN+ QLWETT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI+++ Sbjct: 585 VQRYKGLGEMNSHQLWETTMNPDTRILRKVTIDNAAEADRVFSMLMGDEVPPRREFIEKH 644 Query: 796 SLPSALD 802 + + +D Sbjct: 645 AHYANID 651 >gi|212697384|ref|ZP_03305512.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM 7454] gi|212675576|gb|EEB35183.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM 7454] Length = 634 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 279/585 (47%), Positives = 403/585 (68%), Gaps = 5/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N+ Y+A +I++LKGL+ V+ RP MYIG T E GLHH++YEV+DN++DE+L G D I Sbjct: 1 MDNTQYNASNIRVLKGLEPVRLRPGMYIGSTS-ERGLHHLVYEVVDNSVDEALAGRCDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++++ + TV D+G GIP + H + G S E ++T LHAGGKF+ K+YKVSGGLHGVG Sbjct: 60 KISIDENNIVTVEDDGSGIPIEKHPQTGKSTLETVLTVLHAGGKFDDKAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L +KREG+IY M+F G + L + G +TGT+++F +IF V Sbjct: 120 VSVVNALSEYLIAEVKREGHIYRMTFERGKSTSDLEIIGDTK-ETGTKISFKADPEIFDV 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +N +TL++R RE++FLN V+ LI + + E+ Y GGI+ FV YL+R+K P+ Sbjct: 179 TVYNKNTLENRFREMAFLNKGVR--LIFEDKRDESEVEFKYDGGIKEFVKYLNRNKTPIF 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +++ ++++ ++ DGY EN+L F NNI +GGTHLSG RSALTR + Y Sbjct: 237 KEIPYFEGRQESTEVEISFQYTDGYSENILTFANNIYTVEGGTHLSGFRSALTRSVNDYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ GDD REG T+++S+K+ +P+F QTK KL +SEVR V++F ++ + Sbjct: 297 RKYNLLKENEDNLQGDDAREGITAIISVKISNPQFEGQTKGKLGNSEVRGAVDAFFSEHM 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 ++LEE+P AK I++K L + R+AAR+ARDLTR++ +LD +LPGKLADC +D + Sbjct: 357 GSFLEENPKIAKTIIQKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSQDIGE 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+ +EI ++ITA GTG Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNYEEIKSMITAFGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG FD++KLRY KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY + Sbjct: 477 IG-QEFDLSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKV 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + GK +Y ++ LE+ + G ++ L Sbjct: 536 SSGKKERYCYTDKELEEIVKEWKTDNYKISRYKGLGEMNAEQLWE 580 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 14/203 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N E + + + + + + + K + Sbjct: 443 LPLRGKIMNVEKANLDRILNYEEIKSMITAFGTGIGQEFDLSKLRYGK-----------I 491 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F + + I + + + L Sbjct: 492 IIMTDADVDGAHIRTLLLTFFYRYMKPLVDEGHIYIAQPPLYKVSSGKKERYCYTDKELE 551 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV--KITDASQADDLFSRLM 781 + + + RYKGLGEMNA QLWETT++P+ R LL+V K D FS LM Sbjct: 552 EIVKEWKTDNYKISRYKGLGEMNAEQLWETTMDPENRVLLQVYEKEDSQMSTDATFSMLM 611 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G++VEPRREFI+EN+ LD+ Sbjct: 612 GEKVEPRREFIEENAQYVENLDV 634 >gi|239616758|ref|YP_002940080.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1] gi|239505589|gb|ACR79076.1| DNA gyrase, B subunit [Kosmotoga olearia TBF 19.5.1] Length = 631 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 286/628 (45%), Positives = 401/628 (63%), Gaps = 21/628 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y+A SI+ILKGL+ V++RP MYIG T G++GLHH+IYEV+DN+IDE + GY D I + Sbjct: 2 STDYNAQSIKILKGLEPVRQRPGMYIGST-GKAGLHHLIYEVVDNSIDEVVGGYCDYIKI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DGS +V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYK+SGGLHGVGVS Sbjct: 61 TIFEDGSVSVWDNGRGIPVDIHPETGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+++++ R+G IY + G P+ + G + G+ V F P S +F+ D Sbjct: 121 VVNALSEWMEVKVYRDGKIYRQRYERGKPTTPVEIIGET-DKRGSLVAFKPDSLVFTTTD 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F++D L+ R +EL+FLN V I D+R E R +GGI FV YL+R K + + Sbjct: 180 FDFDILESRFKELAFLNPRVTIEFEDRRYDEKRVFHF--EGGIVEFVKYLNRKKTAINKE 237 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 P I+G+ +++ I LAM++ + Y EN+L F NNI +GGTHL+G ++ LT+ + Y K Sbjct: 238 PFYIEGTYNDVKIQLAMQYTNAYDENILTFVNNIKTVEGGTHLTGFKTVLTKMMNDYARK 297 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ G+D REG T+VLS+ + +P+F QTK KL + EV V + D L Sbjct: 298 LNVLKDKDPNLQGEDVREGLTAVLSVFVKEPQFEGQTKAKLGNEEVYEAVIKVLRDKLPE 357 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + H E K I+ K LDA+ R AA++AR++ RRK L+ +LPGKLADC+ D + +E Sbjct: 358 VFDYHTKELKAIIIKALDAAKARVAAKKAREMIRRKNALENTTLPGKLADCTSTDLETTE 417 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQ R RE QAILPLRGKILNVE++ F+K+L +++I +I A+GTGIG Sbjct: 418 LFIVEGDSAGGSAKQARDREFQAILPLRGKILNVEKSSFEKLLKNEQINNIIVAIGTGIG 477 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D + LRY KIIIMTDADVDGAHIRTLLLT F+R M LI+ G +YI + PLY + Sbjct: 478 DDC-KLENLRYGKIIIMTDADVDGAHIRTLLLTLFYRYMTPLINAGHIYIAQAPLYKVEL 536 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR----------------NF 590 + Y +E LE++L N + G ++ + L Sbjct: 537 NRKKYYFYSDEELEEFLKNNDGKKVSIQRYKGLGEMNPDQLWETTMNPESRKLIKIEMED 596 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI 618 +++A ++ ++ + FIE+ + Sbjct: 597 VEEADRVFTILMGSEVEERREFIERHAL 624 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ N + I ++ V + Sbjct: 448 ILNVEKSSFEKLLKNEQINNIIVAIGTGIGDDCKLENLRYGKIIIMTDADVDGAHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + I + I + + N K L + + + K +S+QRYK Sbjct: 508 LTLFYRYMTPLINAGHIYIAQAPLYKVELNRKKYYFYSDEELEEFLKNNDGKKVSIQRYK 567 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL-PS 799 GLGEMN QLWETT+NP++R L+++++ D +AD +F+ LMG EVE RREFI+ ++L + Sbjct: 568 GLGEMNPDQLWETTMNPESRKLIKIEMEDVEEADRVFTILMGSEVEERREFIERHALMIT 627 Query: 800 ALDI 803 LD+ Sbjct: 628 ELDV 631 >gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237] gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237] Length = 653 Score = 605 bits (1559), Expect = e-170, Method: Composition-based stats. Identities = 282/601 (46%), Positives = 400/601 (66%), Gaps = 13/601 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + ++Y ADSIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE++ G+ D Sbjct: 8 DEQKKNNYSADSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEAMGGHCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ITV +N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG Sbjct: 67 TITVAINEDNSITVRDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS LK + R G IYE + G P+ G GTEVTF P IF Sbjct: 127 VGVSCVNALSKDLKATVFRNGTIYEQEYQKGKALYPVKSIGETEI-RGTEVTFYPDETIF 185 Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 + +FNYDTL +R+RELS+LN V I++ DKR + E + + G++ F+ + Sbjct: 186 TQTVEFNYDTLANRMRELSYLNKGVSITMTDKRQKDKDTPSGFHEERFYSEEGLKEFIKF 245 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LD +++PL++ I ++G ++ I +++AM +N Y EN+ + NNI +GGTHLSG R Sbjct: 246 LDGNREPLIKGVISMEGEKNGIPVEVAMVYNTSYTENLHSYVNNINTHEGGTHLSGFRRG 305 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y + S +K K + GDD REG T+++S+K+ +P+F QTK KL + EV + Sbjct: 306 LTSTLKKYADASGMLEKLKFEIQGDDFREGLTAIISVKVGEPQFEGQTKTKLGNREVSAA 365 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ LS +LEE+P +AKIIV+KV+ A+ R AA +AR++ +RK V+ I LPGKL+ Sbjct: 366 VSQAVSEMLSDYLEENPEDAKIIVQKVVLAATARHAATKAREMVQRKTVMSIGGLPGKLS 425 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS++DP E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A ++ ++EI Sbjct: 426 DCSDQDPVNCEVFLVEGDSAGGTAKQGRDRMFQAILPLRGKILNVEKAMRHRVFENEEIK 485 Query: 476 TLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + TALG IG + KLRYHK++IM DADVDG+HI TL+LTFFFR M L+ Sbjct: 486 NIYTALGVSIGTEEDSQALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRYMRELVEA 545 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI PPLY + +G +Y +++ ++ + + S I+ + + ++ + Sbjct: 546 GHVYIATPPLYLVKKGAKKRYAWNDKERDEIAESFNGSVGIQRYKGLGEMNAEQLWDTTM 605 Query: 592 D 592 + Sbjct: 606 N 606 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 65/271 (23%), Positives = 111/271 (40%), Gaps = 10/271 (3%) Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + + + T+ + + K S+ S + + ++ + Sbjct: 391 KVVLAATARHAATKAREMVQRKTVMSIGGLPGKLSDCSDQDPVNCEVFLVEGDSAGGTAK 450 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +E+A+ VF E + I +L + + A EK Sbjct: 451 QGRD-RMFQAILPLRGKILNVEKAMRHRVFENEEIKNIYTALGVSIGTEEDSQALNLEKL 509 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 + +V V + F F + + + + L L+ G Sbjct: 510 RYHK------VVIMCDADVDGSHIETLILTFFFRYMRELVEAGHVY-IATPPLYLVKKGA 562 Query: 713 KIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 K + D I + G + +QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A+ Sbjct: 563 KKRYAWNDKERDEI-AESFNGSVGIQRYKGLGEMNAEQLWDTTMNPEFRTLRQVVIENAT 621 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + D +FS LMGDEV PRREFI++N++ + +D Sbjct: 622 ETDRVFSMLMGDEVPPRREFIEKNAVYANID 652 >gi|332885345|gb|EGK05596.1| DNA gyrase, B subunit [Dysgonomonas mossii DSM 22836] Length = 651 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 291/602 (48%), Positives = 398/602 (66%), Gaps = 15/602 (2%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M++N + + SY A +IQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+IDE+L Sbjct: 1 MTENQKIASESYSAQNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT++ D S TV DNGRGIP D+ +E SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCDDIKVTIHEDNSITVQDNGRGIPVDIMAKEKKSALEVVLTVLHAGGKFDKGTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS++LK + ++GN+Y + G + G + TGT +TF P Sbjct: 120 GLHGVGVSCVNALSTYLKAEVHKQGNVYVQEYSCGKPQTGVEKIG-TTDHTGTIITFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF V ++ YDTL RLREL+FLN+ V++SL+D+R + + T F + G+E FV Sbjct: 179 DSIFVVTEYKYDTLASRLRELAFLNAGVRLSLVDRRHVKEDGTFKTDTFFSEKGLEEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+D K+ L+ I I + + +++AM +N Y+ENV + NNI +GGTHL+G R Sbjct: 239 YIDASKEALIDDVIHIVTEKQGVPVEVAMTYNTSYNENVYSYVNNIHTIEGGTHLTGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 L+R + Y + S +K K + GDD REG T+V+SIK+ +P+F QTK KL ++EV Sbjct: 299 GLSRTLKKYADDSKMLEKVKVEISGDDFREGLTAVVSIKVAEPQFEGQTKTKLGNNEVIG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEEHP EAKIIV+KV+ A+ R AAR+AR+L +RK L LPGKL Sbjct: 359 AVDQAVGEALGIYLEEHPKEAKIIVEKVILAATARAAARKARELVQRKSPLTGGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D E+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+L S EI Sbjct: 419 ADCSSKDASICEIFLVEGDSAGGTAKQGRDRGFQAILPLRGKILNVEKAMPHKVLESDEI 478 Query: 475 GTLITALGTGIGQDSFDIN----KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG + KLRY K++IMTDADVDG+HI TL+LTFFFR M +L+ Sbjct: 479 KNIYTALGVTIGTEEDSKELNLQKLRYQKVVIMTDADVDGSHIATLILTFFFRHMKALLE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDL 587 G++YI PPLY +GK+ +Y D+ ++ + +E + G ++ L Sbjct: 539 KGYIYIATPPLYLCRKGKNEEYCWDDRQRRAFIEKYADGDENAIHTQRYKGLGEMNAEQL 598 Query: 588 RN 589 + Sbjct: 599 WD 600 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ V + + I +L + E+ K + + Sbjct: 455 LPLRGKILNVEKAMPHKVLESDEIKNIYTALGVTIG------TEEDSKELNLQKLRYQKV 508 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIK-ITG 718 V V + F F R +E+ Y+ L L G + Sbjct: 509 VIMTDADVDGSHIATLILTFFF-----RHMKALLEKGYIYIATPPLYLCRKGKNEEYCWD 563 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I I QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++AD Sbjct: 564 DRQRRAFIEKYADGDENAIHTQRYKGLGEMNAEQLWDTTMNPEHRTLRQVTIENAAEADH 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +FS LMG++V PRREFI+EN+ + +D Sbjct: 624 VFSMLMGEDVAPRREFIEENATYAKID 650 >gi|291461019|ref|ZP_06026484.2| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693] gi|291379423|gb|EFE86941.1| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693] Length = 639 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 267/592 (45%), Positives = 387/592 (65%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V + D V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CNKIDVKILPDNIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++EGN+Y + G + + + GS + GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKEGNVYYQKYYRGKPEEDVKIIGSCEESEHGTTVRFKADR 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF +NY TL +RL+EL++LN + I+L D R E +E T + GGI F++ + + Sbjct: 177 DIFETLIYNYFTLSNRLKELAYLNRGLTITLSDLRKEEKKEETYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + ++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 EATIVDKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG +++S K+P P+F QTK KL +SE+ +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQTKGKLGNSEISGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P KI+++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSNSLKIFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG+ FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M LI G +YI P Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY ++ GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNVLGQMNQENKKYTIQRYKGLGEMNPEQLWE 587 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 132/354 (37%), Gaps = 20/354 (5%) Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GK + + + K++ + ++ + T I Q F+ T + + I Sbjct: 301 GKAQGLLKDKDGKLMGNDIREGVVAIVSTKIPQPQFEGQ----------TKGKLGNSEIS 350 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574 ++ T + + I K + I K + + + + Sbjct: 351 GIVNTIVSNSLK-IFLEDNPAITKIVIEKILNSKKAREAAQKARELVLRKSVLEVGSLPG 409 Query: 575 FCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 + FI + K +++ + + + N E Sbjct: 410 KLADCTSKKAEECEIFIVEGDSAGGSAKQGRDRYNQAIL--PLRGKIINVEKAGLHKSLE 467 Query: 635 ASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 +S++ + +++ S ++ V + + I +F +Y + Sbjct: 468 SSEIRAMVTAFGTSIGETFDISKLRYGKIILMTDADVDGAHI--RTLILTFLYRYMKDLI 525 Query: 695 NRIEENYLTILSLICNGDKIKITGPCSL-LDTI---FSIGRKGISMQRYKGLGEMNASQL 750 + K I L L + + K ++QRYKGLGEMN QL Sbjct: 526 TEGNIYIACPPLYKVSSGKQIIYAYNDLELKNVLGQMNQENKKYTIQRYKGLGEMNPEQL 585 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT+NPD R LL+V I +A +AD LF +LMGD+VEPRREFI+E++ +DI Sbjct: 586 WETTMNPDGRLLLKVSIDNAREADMLFDKLMGDKVEPRREFIEEHAEYVKNIDI 639 >gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10] gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10] Length = 636 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 279/589 (47%), Positives = 373/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DE+L GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDEALAGYCDWIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G P+ V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVHRDGKIYRQRYERGKPVTPVEVIGET-DKHGTIVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GGI +V YL+R KK Sbjct: 180 DPDVLEHRLREIAFLVPGLKIEFEDRINGEK--KTFKFDGGIVEYVKYLNRGKKVFHDVI 237 Query: 248 IRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + D + +++A ++ D Y E+++ F N I DGGTH++ ++ LTR + Sbjct: 238 YMKRTEKVQTKNGEDEVIVEIAFQYTDSYSEDIVSFANTIKTVDGGTHVTAFKTMLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K S G+D REG T+V+S+ + +P F QTK KL + EV+ + + Sbjct: 298 NEYGKKHGFLK-GDDSFQGEDVREGLTAVVSVYVKNPEFEGQTKSKLGNEEVKEAINRVM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L + +P K I+ K++ R+AARRAR++ RRK VL +LPGKLADCS Sbjct: 357 RDELKKIFDANPELVKTILSKIMSTKQAREAARRAREMVRRKNVLQNTTLPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D +K+ELF+VEGDSAGGSAKQ R RE QA+LP+RGKILNVE++ DK+L +++I +I A Sbjct: 417 DREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDKLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FD KLRY +IIIMTDAD+DGAHIRTLLLT F+R M LI G +YI PP Sbjct: 477 VGTGIG-DDFDEGKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I GK YV + L +Y G ++ L Sbjct: 536 LYRIKAGKEEFYVYSDLELMEYKEKLQGKRIEIQRYKGLGEMNPEQLWE 584 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++++ + + + ++ + + Sbjct: 453 ILNVEKSSLDKLLKNEQISDIIVAVGTGIGDDFDEGKLRYGRIIIMTDADIDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + I R+ + + ++ + L++ + K I +QRYK Sbjct: 513 LTLFYRYMRPLIEQGRVYIALPPLYRIKAGKEEFYVYSDLELMEYKEKLQGKRIEIQRYK 572 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG++ RREFI+ ++L Sbjct: 573 GLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKVK 632 Query: 800 ALDI 803 LDI Sbjct: 633 ELDI 636 >gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L] Length = 640 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 303/648 (46%), Positives = 427/648 (65%), Gaps = 14/648 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + Y A+ IQ+L+GL+AV+KRP MYIG T GLHH++YEV+DN++DE+L G+ Sbjct: 1 MAEG-EKKDYGAEQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEVVDNSVDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ D S TVSDNGRGIP +HK G A EV++T LHAGGKF Y +SGGL Sbjct: 59 CTHIEVTIEADNSITVSDNGRGIPVAMHKV-GKPAVEVVLTVLHAGGKFGGDGYPISGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178 HGVG+SVVNALS ++++KR+ ++++SF GI + L T G +TGT V F P Sbjct: 118 HGVGISVVNALSIQTEVKVKRDNYLWDISFARGITEKKLTKTRALEPGEETGTTVHFKPD 177 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF +++DTL+ RLREL+FLN + I+L D R ++ Y+GG+ +FV +L+ Sbjct: 178 PEIFPDVVYDFDTLKTRLRELAFLNKGLHITLTDNR-EHNKQEVYCYEGGLISFVQFLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+ + + I + G ++ + +D+AM++NDGY EN+L F N+I ++GGTHLSG RSALTR Sbjct: 237 NKQAVHPTVIPLDGEKNQVMVDIAMQYNDGYSENILTFVNDIFTEEGGTHLSGFRSALTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y + K+++ ++ G+D REG T+++S+K+ +P+F QTK KL +SEV+ +V++ Sbjct: 297 TINDYGRSAGIIKENEDNLSGEDVREGLTAIVSVKVREPQFEGQTKTKLGNSEVKGIVDT 356 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V+DGL + EHP+EAK IV K + AS R AARRAR+LTRRK L+I+SLPGKLADCS Sbjct: 357 LVSDGLREFFGEHPVEAKSIVNKTITASRARQAARRARELTRRKNALEISSLPGKLADCS 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+ +++E++LVEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+AR DK+L+++EI +I Sbjct: 417 EKSSERTEIYLVEGDSAGGSAKQGRDRKFQAILPLRGKIINVEKARLDKILANEEIRAMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ FDI K RY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +YI + Sbjct: 477 TAFGTGIGEE-FDITKRRYDKIIIMTDADVDGAHIRTLLLTFFYRFMKPLITEGHVYIAQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +GK + Y +E++ L + G ++ L Sbjct: 536 PPLYQVRKGKQMWYFYTDETMNAKLDELGRDTNNIVVQRYKGLGEMNPEQLWET-----T 590 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + H + +E I V + + + N Sbjct: 591 MDPEYRTMLQVHLEDAVEADRIFSVLMGDKVEPRRQFIQENAKKVRNL 638 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + D ++ V + Sbjct: 455 IINVEKARLDKILANEEIRAMITAFGTGIGEEFDITKRRYDKIIIMTDADVDGAHIRTLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GR--KGISMQ 737 F + I + L + G ++ ++ GR I +Q Sbjct: 515 LTFFYRFMKPLITEGHVY-IAQPPLYQVRKGKQMWYFYTDETMNAKLDELGRDTNNIVVQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT++P+ R++L+V + DA +AD +FS LMGD+VEPRR+FIQEN+ Sbjct: 574 RYKGLGEMNPEQLWETTMDPEYRTMLQVHLEDAVEADRIFSVLMGDKVEPRRQFIQENAK 633 Query: 798 PS-ALD 802 LD Sbjct: 634 KVRNLD 639 >gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845] gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845] Length = 657 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 278/650 (42%), Positives = 401/650 (61%), Gaps = 16/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENPENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D+H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCQNIEVTINEDNSITVEDDGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K ++ R+G IY+ + G P+ V G + TGT F P Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 +IF+ + + + R+REL++LN+ ++I+L D R + + R K G++ FV Y Sbjct: 179 EIFTTTVYQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + L+ +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G G + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY T K +Y E+ + ++ + E ++ + Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVNEYCYTEQQRQAFIDKYANGAEDAKAIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + I + + + + Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEKNATYANID 656 >gi|320537025|ref|ZP_08037004.1| DNA gyrase, B subunit [Treponema phagedenis F0421] gi|320146100|gb|EFW37737.1| DNA gyrase, B subunit [Treponema phagedenis F0421] Length = 638 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 285/637 (44%), Positives = 413/637 (64%), Gaps = 13/637 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + NS+Y A +I +L+GL+AV+KRP MYIG T G +GLHH++YEV+DN IDE++ G+ D I Sbjct: 1 MTNSTYSASNITVLEGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNCIDEAMAGFCDRI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV L + V DNGRGIP D+H +EGISA E+++T+LHAGGKF++ SYKVSGGLHGVG Sbjct: 60 TVVLEKNDIVRVEDNGRGIPVDIHPQEGISALEIVLTKLHAGGKFDKGSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS+W++ + ++G + F G+ + + S + GT + + IF Sbjct: 120 VSVVNALSTWMEATVYKDGAEHYQKFEIGVPLDSVKKI-STTDKHGTTIRWAADPAIFKE 178 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++D L RLREL+FLNS++ I + D+R P+E T ++GGI FV YL K+ L Sbjct: 179 TTTYDFDVLATRLRELAFLNSNITIVMRDERLSTPKEATFAFEGGISHFVQYLHGTKQVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI I+ +++I +++A+++NDGY+EN+L F N+I ++GGTHL G +SALTR + + Sbjct: 239 PAEPIYIEAEKNDIIMEIALQYNDGYNENLLSFVNDINTREGGTHLEGFKSALTRVMNEF 298 Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++K+ + + G+D R G T+V+SIK+P+P+F QTK KL +S+VR +V+SFV Sbjct: 299 LKKNSKLIKKLDKEEKLTGEDVRAGLTAVISIKVPEPQFEGQTKTKLGNSDVRGIVDSFV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ + E++P I++K + + R AARRA++ TRRK LD LPGKLADCS + Sbjct: 359 NEKLTLFFEQNPAIIDKILEKTVSEATARIAARRAKEATRRKSGLDSFGLPGKLADCSLK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPK E+++VEGDSAGGSAK+GR + QAILPL GK+LNVE+ R DK+++++++ +I + Sbjct: 419 DPKLCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRIDKVMNNEKLQPIIAS 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D F+I+K+RYHKIIIM DADVDG+HIRTLLLTFFFR MP +I G++Y+ PP Sbjct: 479 LGTGIGKD-FNIDKIRYHKIIIMADADVDGSHIRTLLLTFFFRYMPQIIEEGYVYLAMPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDK 599 LY I+ K YV ++E + L + G + L +D Sbjct: 538 LYKISYNKKEWYVYNDEERDQVLKEIGKENNVAVQRYKGLGEMDGTQLWET-----TMDP 592 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + IE I E + + Sbjct: 593 ARRKMMRVTLPDAIEADRIFSTLMGEEVEPRRQFIEE 629 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + K ++ ++ V + Sbjct: 455 MLNVEKTRIDKVMNNEKLQPIIASLGTGIGKDFNIDKIRYHKIIIMADADVDGSHIRTLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739 F F + I + + + N + + + IG+ +++QRY Sbjct: 515 LTFFFRYMPQIIEEGYVYLAMPPLYKISYNKKEWYVYNDEERDQVLKEIGKENNVAVQRY 574 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+ +QLWETT++P R ++RV + DA +AD +FS LMG+EVEPRR+FI+EN++ + Sbjct: 575 KGLGEMDGTQLWETTMDPARRKMMRVTLPDAIEADRIFSTLMGEEVEPRRQFIEENAVYA 634 Query: 800 ALDI 803 LD+ Sbjct: 635 NLDV 638 >gi|228470217|ref|ZP_04055124.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3] gi|228308168|gb|EEK17031.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3] Length = 657 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 288/587 (49%), Positives = 385/587 (65%), Gaps = 18/587 (3%) Query: 1 MSDNIQ--------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 MS+ + +Y A SIQ+L+GL+AV+KRP+MYIGD E GLHH++YEV+DN+ Sbjct: 1 MSEQEKDIKTAPQDKGAYSASSIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVYEVVDNS 59 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L GY + V + D S V+DNGRGIP D+H +EG SA EV+MT LHAGGKF++ Sbjct: 60 IDEALAGYCTEVLVEILPDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKG 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 SYKVSGGLHGVGVS VNALS L + R+G IY + G + V G A DTGT Sbjct: 120 SYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQKYSRGKPLTGVEVVGEAS-DTGTR 178 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGG 228 +TF P IF ++ DTL HRLRELS+LN+ + + LID R + P+ T + + G Sbjct: 179 ITFKPDDTIFRETIYSSDTLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWTFYSEDG 238 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 + FV Y+D K+ L+ I + + +++A+ +N Y ENV + N+I +GGTH Sbjct: 239 LSEFVRYVDGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 L+G R LTR + Y S K K + GDD REG T+++S+K+ +P+F QTK KL Sbjct: 299 LTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 +SE+ SVV++ V++ L +LEEHPLEAK+IV KV+ A+ R AARRAR+L +RK L Sbjct: 359 NSEIVSVVDAAVSEALEIYLEEHPLEAKLIVDKVILAAQARHAARRARELVQRKSPLTGG 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 LPGKLADCS +DP + ELF+VEGDSAGG+AKQGR + QAILPLRGKILNVE+A ++ Sbjct: 419 GLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRI 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 L + EI + TALG +G + +KLRYHKIIIMTDADVDGAHI TL+LTFFFR Sbjct: 479 LDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRN 538 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 M LI NG++YI PPLY + + +Y ++ +++ +E Sbjct: 539 MRPLIENGYVYIANPPLYLCKKDRIEEYCWTDDEKANFVTKYGNGQE 585 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 54/69 (78%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 I +QRYKGLGEMN QLW+TT+NP TR+L +V I + + AD +FS LM ++VEPRREFI+ Sbjct: 588 IKIQRYKGLGEMNDIQLWDTTMNPQTRTLRKVTIDNLASADSVFSMLMSEDVEPRREFIE 647 Query: 794 ENSLPSALD 802 EN+ + +D Sbjct: 648 ENATYANID 656 >gi|289804021|ref|ZP_06534650.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 624 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 298/625 (47%), Positives = 410/625 (65%), Gaps = 10/625 (1%) Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ + Sbjct: 2 FEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHPN 59 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++K Sbjct: 60 IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDK 119 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 120 EGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSE 179 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP SE Sbjct: 180 YLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSE 239 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GIG Sbjct: 240 LYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG 299 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP ++ G +YI +PPLY + + Sbjct: 300 RDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 359 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK QY+KD+E+++ Y I+ +L +S L + + K+I Sbjct: 360 GKQEQYIKDDEAMDQYQISIALDGATLHANAHAPALSGEALEKLVSEYNATQKMIGRMER 419 Query: 607 NHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWHGSINN 659 K +++ V D++ + L LN + K + + N Sbjct: 420 RFPKALLKELVYQPTLTEADLSDEQTVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNL 479 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 + +V+ GV + L+ + + ++ + + +T Sbjct: 480 FEPIVRVRTHGVDTDYPLDHEFVTGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSF 539 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L+ + R+G+++QRYKGLGEMN QLWETT++P++R +LRV + DA AD LF+ Sbjct: 540 EQALEWLVKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTT 599 Query: 780 LMGDEVEPRREFIQENSLP-SALDI 803 LMGD VEPRR FI+EN+L + +DI Sbjct: 600 LMGDAVEPRRAFIEENALKAANIDI 624 >gi|73747960|ref|YP_307199.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1] gi|147668656|ref|YP_001213474.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1] gi|73659676|emb|CAI82283.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1] gi|146269604|gb|ABQ16596.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1] Length = 642 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 285/584 (48%), Positives = 392/584 (67%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y A IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G D I Sbjct: 12 NSETYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + DGS +V DNGRGIP D+H ISA E +MT LHAG KF K+Y+VSGGLHGVG Sbjct: 71 VIMFKDGSVSVEDNGRGIPVDIHSTTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS W ++++R G IY+ S++ G PL G +GT F+ S IFS Sbjct: 131 SVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++++TL RLRE+++LN +++ + D++S + R +GGI FV +L+R+++ + Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHR 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI I D+ +++A+++NDGY ++ L F N + DGGTHL+G RSALTR Y Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAH 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KS K +++GDD REG +++S+K+P+P+F QTK KL + E++S VES V + LS Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEEHP + K I++K + A+ R+AAR+ARDL RK LD +LPGKLADCSERD Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A DKML+ +EI +ITAL GI Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 + FD +KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI L+I +PPLY I Sbjct: 488 -DNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G + +V ++ E L ++ G +S L Sbjct: 547 IGSTEHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWR 590 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + +A + + S + LV V + Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739 F F + I + + + + + + + I + + + +QRY Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KEAILAQTKSTKVDIQRY 577 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637 Query: 800 -ALDI 803 LDI Sbjct: 638 KNLDI 642 >gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1] gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1] Length = 638 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 307/589 (52%), Positives = 407/589 (69%), Gaps = 3/589 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M QN+ Y AD IQ+L+GL+AV++RP MYIG T GLHH++YEV+DN+IDE+L GY Sbjct: 1 MDQQQQNNKYSADQIQVLEGLEAVRRRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+ D S TV DNGRGIP DLH + G A EV++T LHAGGKF YKVSGGL Sbjct: 60 CDKIIVTIQEDNSITVEDNGRGIPVDLHPKVGRPAVEVVLTMLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L + IKR G IY+ + GI L + G++ TGT+VTF P + Sbjct: 120 HGVGVSVVNALSKYLSVEIKRNGKIYKQEYSRGIPTTELQIVGNSK-TTGTKVTFKPDEE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ +TL R+REL++LN ++I L DKR E Y GGI+ FV +L+R+K Sbjct: 179 IFEELVFSLETLSQRIRELAYLNKGIKIILQDKRKDPVAEQIFQYDGGIKDFVKHLNRNK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + PI + G ++ I +++A+++NDGY EN+L + NNI DGGTH GL++ALTR I Sbjct: 239 QTIHTKPIYVSGEKEQIVVEVAIQYNDGYTENMLSYANNIHTVDGGTHEVGLKTALTRVI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K + ++ G+D REG T V+S+K+P+P+F QTK KL +SEVR +V+S Sbjct: 299 NDYGRQHGVLKNNDANLSGEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIF 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS +L E+P AK I++K + A+ R+AAR+AR+LTRRK L+ SLPGKLADCSE+ Sbjct: 359 AEKLSTYLVENPSVAKKIIEKGITAARAREAARKARELTRRKSALETMSLPGKLADCSEK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE++LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+L+++EI +ITA Sbjct: 419 DPSVSEIYLVEGDSAGGSAKQGRERRFQAILPLKGKILNVEKARMDKILANEEIRAMITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG+D FDI K RYHKI+IMTDADVDGAHIRTLL+TFF+R M LI G++++ +PP Sbjct: 479 MGTGIGED-FDIAKARYHKIVIMTDADVDGAHIRTLLMTFFYRYMRQLIEAGYVFVAQPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + +GK Y + LE+ L G ++ L Sbjct: 538 LYRVRKGKHDSYCYSDNELEELLNRIGHDRVNIQRYKGLGEMNPEQLWE 586 Score = 187 bits (474), Expect = 9e-45, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + + +V V + Sbjct: 455 ILNVEKARMDKILANEEIRAMITAMGTGIGEDFDIAKARYHKIVIMTDADVDGAHIRTLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + I + + + + L + + IG +++QRYK Sbjct: 515 MTFFYRYMRQLIEAGYVFVAQPPLYRVRKGKHDSYCYSDNELEELLNRIGHDRVNIQRYK 574 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT++PDTR++L+V + DA +AD FS LMGD VEPRR+FIQEN+ Sbjct: 575 GLGEMNPEQLWETTMDPDTRTMLQVTLEDAIEADATFSMLMGDRVEPRRDFIQENAKYVR 634 Query: 800 ALDI 803 LDI Sbjct: 635 NLDI 638 >gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A] gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289] gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A] gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289] Length = 657 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 279/650 (42%), Positives = 398/650 (61%), Gaps = 16/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCKNIEVTINEDNSVTVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K ++ R+G IY+ + G P+ V G TGT F P + Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGETE-KTGTRQQFWPDA 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF+ F +D + R+REL++LN+ ++I+L D R + + R K G++ FV Y Sbjct: 179 GIFTTTVFQWDIVARRMRELAYLNAGIRITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKTEKQGIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKAYADSDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + L+ +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G + + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY T K +Y ++ + +L E ++ + Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + I + + + + Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEKNATYANID 656 >gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13] Length = 636 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 301/587 (51%), Positives = 411/587 (70%), Gaps = 5/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +Q +SYD +IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY I Sbjct: 1 MQENSYDESNIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCSEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGLHGVG Sbjct: 60 NVIVEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS LK+ + R+G I+ F G+ + L + G + TGT + F+P +IF+ Sbjct: 120 ASVVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKIIGET-DVTGTIIHFVPDEEIFTE 178 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++YDTL HRLREL+FLN ++I++ DKR P++ Y+GGI ++V +L+R K+ + Sbjct: 179 TKEYDYDTLAHRLRELAFLNKGIRITIEDKREETPKKNEYHYEGGIASYVEHLNRTKEVI 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + ++G +D ISI++A+++ND Y N+ F NNI +GGTH SG ++ALTR I Y Sbjct: 239 HEEVVFVEGEKDGISIEVALQYNDSYTSNLYSFANNISTYEGGTHESGFKTALTRVINDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R+V +S + Sbjct: 299 ARKNNIFKDADSNLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTDSVFTEK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +L E+P A+ IV+K L AS R AA++AR+LTRRK L+I+SLPGKLADCS +DP Sbjct: 359 FEGFLLENPSAARKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADCSSKDPS 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SE+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+LS+ E+ +ITALGT Sbjct: 419 ISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FDI++ RYHKI+IMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPLY Sbjct: 479 GIGED-FDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 I +GK ++Y ++ LE+ L S + G ++ L Sbjct: 538 IQQGKKIEYAYNDRQLEEILATMSDQPKAGIQRYKGLGEMNPEQLWE 584 Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 115/628 (18%), Positives = 198/628 (31%), Gaps = 70/628 (11%) Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ----GSRDNISIDLAMRWNDGYHENV 273 + I+ ++ +++ I G + I M Sbjct: 37 HHLVWEIVDNSIDEALAGYCSEINVIVEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMT 96 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 + G GL + + + + +G + Sbjct: 97 VLHAGGKFGGGGYKVSGGLHGVGASVVNALSSELKIYVHRDGKIHYQQFNKGVPNEDLKI 156 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 + + + + E+ + + + D L+ L E K I R Sbjct: 157 IGETDVTGTIIHFVPDEEIFTETKEYDYDTLAHRLRELAFLNKGI----------RITIE 206 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPK--KSELFLVEGDSAGGS---AKQGRSRENQ 448 R+ T +K + R + E+ VEG+ G S A Q Sbjct: 207 DKREETPKKNEYHYEGGIASYVEHLNRTKEVIHEEVVFVEGEKDGISIEVALQYNDSYTS 266 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 + ++ +G + K I DAD Sbjct: 267 NLY----------------SFANNISTYEGGTHESGFKTALTRVINDYARKNNIFKDADS 310 Query: 509 D--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLE 560 + G +R L + P G + + K ++ + S Sbjct: 311 NLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEARTVTDSVFTEKFEGFLLENPSAA 370 Query: 561 DYLINQSLSEEIELFCDSKG--------VISKNDLRNFIDDALKIDKLIKDFYPNHDKTF 612 ++ + L K + + L + D D I + Y + Sbjct: 371 RKIVEKGLMASRARMAAKKARELTRRKSALEISSLPGKLADCSSKDPSISEIYVVEGDSA 430 Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKR 666 A + ++ + + + RL+ I +E G + DI R Sbjct: 431 GGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGIGEDFDISRAR 490 Query: 667 IARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKITG-- 718 + V ++G+ I + F +Y R I + L I G KI+ Sbjct: 491 YHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLYKIQQGKKIEYAYND 550 Query: 719 --PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L T+ + G +QRYKGLGEMN QLWETT++P +R+LL+V + DA +AD+ Sbjct: 551 RQLEEILATMSDQPKAG--IQRYKGLGEMNPEQLWETTMDPVSRTLLQVSLQDAIEADET 608 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQ+N+ LDI Sbjct: 609 FEILMGDKVEPRRNFIQDNARYVKNLDI 636 >gi|57233676|ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195] gi|57224124|gb|AAW39181.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195] Length = 642 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 284/584 (48%), Positives = 390/584 (66%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +Y+A IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G D I Sbjct: 12 NAENYNASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + DGS +V DNGRGIP D+H ISA E +MT LHAG KF K+Y+VSGGLHGVG Sbjct: 71 VIIYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNAL+ W ++++R G IY+ S+ G PL G + +GT F S IFS Sbjct: 131 SVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEVG-VSDGSGTTTIFKADSQIFSTT 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++++TL RLRE+++LN +++ + D++S + R +GGI FV +L+R+++ + Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITGFVRHLNRNREVRHR 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI I D+ +++A+++NDGY ++ L F N + DGGTHL+G RSALTR Y Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAH 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KS K +++GDD REG +++S+K+P+P+F QTK KL + E++S VES V + LS Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVTEQLS 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEEHP + K I++K + A+ R+AAR+ARDL RK LD +LPGKLADCSERD Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A DKML+ +EI +ITAL GI Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 + FD KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI L+I +PPLY I Sbjct: 488 -DNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G + +V ++ E L ++ G +S L Sbjct: 547 IGSNEHWVYNDAEKETLLSQTKSNKVDIQRYKGLGEMSAEQLWK 590 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + +A + + + + LV V + Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG-ISMQRY 739 F F + I + + + + ++ + +T+ S + + +QRY Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSNEHWVYNDAE-KETLLSQTKSNKVDIQRY 577 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLW+TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S Sbjct: 578 KGLGEMSAEQLWKTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSKTV 637 Query: 800 -ALDI 803 LDI Sbjct: 638 KNLDI 642 >gi|261415262|ref|YP_003248945.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371718|gb|ACX74463.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 646 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 284/652 (43%), Positives = 397/652 (60%), Gaps = 15/652 (2%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ + + Y SI +L+GL+AV+ RP+MYIG TD GLHH+++EV+DN++DE Sbjct: 1 MAEETEEVKKAEADYSGSSITVLEGLEAVRVRPAMYIGSTD-IRGLHHLVWEVVDNSVDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+ + I +++ V+DNGRGIPTD+H +E + +V+MT+LHAGGKFN SYK Sbjct: 60 ALAGFCNHIEISILPGNGIRVTDNGRGIPTDIHPKEKVGTIQVVMTKLHAGGKFNNSSYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VS GLHGVGVS VNALS+ L + ++R G + F G+ P V G + TGT V F Sbjct: 120 VSAGLHGVGVSCVNALSNKLIVTVRRNGRVVRQEFARGVPCGPQVDIGESDGTTGTSVEF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVS 234 P IFS + YDTL R REL+FL S ++++L D+R PE ++ T + GG+ FV Sbjct: 180 YPDDTIFSETVYVYDTLATRFRELAFLMSGLRLTLTDERDPEHKQTDTFCFPGGVSEFVR 239 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+D H+ PL PI + +++AM +NDGY EN F NN+ DGGTH++G ++ Sbjct: 240 YVDEHRTPLFAEPIHLVLPDGQYPLEVAMWYNDGYQENFFSFVNNVNTYDGGTHVTGFKT 299 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I+ + + K + + DD REG T+V++IK+ P+F QTK KL +SE+ Sbjct: 300 ALTRVISKFAQDM-PKGKKEAQITSDDIREGLTAVIAIKVSQPQFEGQTKRKLGNSEIAG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V S L + +E+P KII+ KV +A++ R+AA RAR L RRK VL+ LPGKL Sbjct: 359 YVASAFGAKLEEYFQENPAAVKIILDKVYNAAVAREAAHRARTLARRKNVLESGGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS RDPK+ E+F+VEGDSAGGSAK GRSRE QAILP+RGKILNVE+A ++L ++EI Sbjct: 419 ADCSSRDPKECEMFIVEGDSAGGSAKMGRSREFQAILPIRGKILNVEKASLHRVLDTEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 L+ A+GTGIG F I KLRY KIIIMTDADVDG+HI+TLLLTFFFR M LI G + Sbjct: 479 QNLVNAIGTGIG-TEFKIEKLRYDKIIIMTDADVDGSHIQTLLLTFFFRYMRPLIDAGHI 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRNFIDD 593 ++ PPLY + G+ +Y+ DE + + G +S L + Sbjct: 538 FLAMPPLYKLKIGQKERYLFDENEKDKVMAEIEDKKNVAITRFKGLGEMSPEQLNDT--- 594 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++ + H + + I + E + + + LN + Sbjct: 595 --TMNPKTRFLKQCHVEDSVLADQIFSMLMGEDVEPRRKFIETNAYKVLNDL 644 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V ++ N +N I + D ++ V + Sbjct: 461 ILNVEKASLHRVLDTEEIQNLVNAIGTGIGTEFKIEKLRYDKIIIMTDADVDGSHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738 F F I + I + L + + D + + +K +++ R Sbjct: 521 LTFFFRYMRPLIDAGHIFLAMPPLYKLKIGQKERYLFDENE-KDKVMAEIEDKKNVAITR 579 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +KGLGEM+ QL +TT+NP TR L + + D+ AD +FS LMG++VEPRR+FI+ N+ Sbjct: 580 FKGLGEMSPEQLNDTTMNPKTRFLKQCHVEDSVLADQIFSMLMGEDVEPRRKFIETNAYK 639 Query: 799 S--ALDI 803 LDI Sbjct: 640 VLNDLDI 646 >gi|288801620|ref|ZP_06407062.1| DNA gyrase, B subunit [Prevotella melaninogenica D18] gi|288335662|gb|EFC74095.1| DNA gyrase, B subunit [Prevotella melaninogenica D18] Length = 655 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 278/608 (45%), Positives = 392/608 (64%), Gaps = 21/608 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENPENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D+H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCQNIEVTINEDNSITVEDDGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K ++ R+G IY+ + G P+ V G + TGT F P Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 +IF+ + + + R+REL++LN+ ++I+L D R + + R K G++ FV Y Sbjct: 179 EIFTTTVYQWAIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKTYADNDPQISKQLEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + L+ +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALTDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G G + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEGEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-----IELFCDSKGV 581 +I G LYI PPLY T K +Y E+ + ++ + +E G Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYANGDEEDKAIHTQRYKGLGE 598 Query: 582 ISKNDLRN 589 ++ L Sbjct: 599 MNPEQLWE 606 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 2/71 (2%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I + DD+FS LMGD+VEPRREF Sbjct: 586 KAIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENDV--DDIFSMLMGDDVEPRREF 643 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 644 IEKNATYANID 654 >gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319] gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319] Length = 657 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 280/650 (43%), Positives = 398/650 (61%), Gaps = 16/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCQNIEVTINEDNSITVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ R+G IY+ + G P+ V G TGT F P Sbjct: 120 LHGVGVSCVNALSTHMMSQVYRDGKIYQQEYEKGKPLYPVKVVGET-QKTGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF+ + +D + R+REL++LN+ ++I+L D R + + R K G++ FV Y Sbjct: 179 TIFTTTVYQWDIVARRMRELAYLNAGIKITLTDLRPDPETGKTRTEVFHAKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRAA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + SY + S +K K + G+D REG T+V++IK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKSYADNDPQISKQIEKAKIEIAGEDFREGLTAVIAIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + LS +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VAGAVQQAVGEALSDYLEEHPNEAKMICNKVILAATARVAARKARESVQRKNVMSGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G ++ + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVENEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY T K +Y E+ + +L E ++ + Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + I + + + + Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEKNATYANID 656 >gi|19705416|ref|NP_602911.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713409|gb|AAL94210.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 639 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 266/592 (44%), Positives = 382/592 (64%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEEKM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + + V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CDKIEVKILPENIIEVMDNGRGIPTDIHPKYGKSAMEIVLTILHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++ G ++ + G + + V GS ++ GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVHYQKYHRGKPEEDVKVIGSCDESEHGTIVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +NY TL +RL+EL++LN + I L D R E +E T + GGI F++ + + Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEETYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG ++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+ L +LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG+ FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M LI G +YI P Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY ++ GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 9/266 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ + Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDIAKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720 ++ V + + I +F +Y + + K I Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVSSGKQIIYAYNDL 553 Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF Sbjct: 554 ELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD+VEPRREFI+E++ +DI Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639 >gi|78185902|ref|YP_373945.1| DNA gyrase, B subunit [Chlorobium luteolum DSM 273] gi|78165804|gb|ABB22902.1| DNA gyrase subunit B [Chlorobium luteolum DSM 273] Length = 644 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 284/590 (48%), Positives = 399/590 (67%), Gaps = 10/590 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 S+Y A +IQ+L G+ V+ RP+MYIGD GLHH+IYE++DN+IDE+L GY D Sbjct: 7 QTPQSNYGATNIQVLDGIAHVRMRPAMYIGDIHS-RGLHHLIYEIVDNSIDETLGGYNDY 65 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V+LN DGS TV D+GRGIP D+H ++ SA E++MT + AGGKF++ +YKVSGGLHGV Sbjct: 66 IFVSLNPDGSVTVIDHGRGIPVDIHPDKKKSALELVMTLIGAGGKFDKGAYKVSGGLHGV 125 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS W ++ + R+G + + G+ + + G+ T+ TF+P S+IF Sbjct: 126 GASVVNALSEWCEVEVYRDGKAWFQRYHRGVPEADVKEIGTTTERG-TKTTFMPDSEIFK 184 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +F D + R+REL+FLNS+++I + + E + T ++GG++ FV + D ++ L Sbjct: 185 VTEFRKDIIIDRMRELAFLNSNLKIVV---QDIEGEQETFHFEGGLKEFVLFTDENRLNL 241 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 ++ PI I G +D +++A+ +ND Y ENV + NNI +GGTH++G R ALTR + +Y Sbjct: 242 IKEPIYIYGEKDGTIVEIALEYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAY 301 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K+ K K ++ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VES +N+ Sbjct: 302 AQKNDLLKNLKLALTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVESVLNEQ 361 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + E +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS DP+ Sbjct: 362 LAEFAESNPNVIKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPE 421 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I ALGT Sbjct: 422 HCELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGT 481 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G +YI +PPLY Sbjct: 482 NFGEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVYIAQPPLYL 541 Query: 544 ITRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLR 588 + GK QY D++ + + + G ++ L Sbjct: 542 VKSGKEQQYAWDDDERNSISDSMKKMQKGKANVHIQRYKGLGEMNPEQLW 591 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + ++ L L+ Sbjct: 484 GEEEFSAEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGKVY-IAQPPLYLV 542 Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +G + + + G+ + +QRYKGLGEMN QLW TT++P+ RS Sbjct: 543 KSGKEQQYAWDDDERNSISDSMKK-MQKGKANVHIQRYKGLGEMNPEQLWGTTMDPEHRS 601 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL+V + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 602 LLQVSVENAMEADKVFSTLMGDKVEPRREFIEKNARYVRRLDV 644 >gi|270307455|ref|YP_003329513.1| DNA gyrase, B subunit [Dehalococcoides sp. VS] gi|270153347|gb|ACZ61185.1| DNA gyrase, B subunit [Dehalococcoides sp. VS] Length = 642 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 283/584 (48%), Positives = 389/584 (66%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y A IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G D I Sbjct: 12 NSENYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + DGS +V DNGRGIP D+H ISA E +MT LHAG KF K+Y+VSGGLHGVG Sbjct: 71 VIMFKDGSVSVEDNGRGIPVDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNAL+ W ++++R G IY+ S+ G PL G + +GT F S IFS Sbjct: 131 SVVNALAEWTTVKVRRNGKIYQQSYQRGKPSTPLEEIG-VSDGSGTTTIFKADSQIFSTT 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++++ L RLRE+++LN +++ + D++S + R +GGI FV +L+R+++ + Sbjct: 190 EYDFEILTDRLREIAYLNKGLEVYIYDEQSDQERTYYF--EGGITGFVRHLNRNREVRHR 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI I D+ +++A+++NDGY ++ L F N + DGGTHL+G RSALTR Y Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTIDGGTHLTGFRSALTRAFNDYAH 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KS K +++GDD REG +++S+K+P+P+F QTK KL + E++S VES V + LS Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEEHP + K I++K + A+ R+AAR+ARDL RK LD +LPGKLADCSERD Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A DKML+ +EI +ITAL GI Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 + FD KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI L+I +PPLY I Sbjct: 488 -DNDFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G + +V ++ E L ++ G +S L Sbjct: 547 IGSTEHWVYNDAEKETLLSQTKSTKVDIQRYKGLGEMSAEQLWR 590 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + +A + + + + LV V + Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPAKLRYNRLVLMTDADVDGSHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739 F F + I + + + + + + +T+ S + + +QRY Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KETLLSQTKSTKVDIQRY 577 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637 Query: 800 -ALDI 803 LDI Sbjct: 638 KNLDI 642 >gi|87301672|ref|ZP_01084512.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701] gi|87283889|gb|EAQ75843.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 5701] Length = 652 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 291/654 (44%), Positives = 401/654 (61%), Gaps = 17/654 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + +Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSDASKIQHAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L DGS ++DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDEILVRLCEDGSAEITDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS W+++ ++R+G ++ F G L TGT V F P Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQGQVHRQRFERGTPIGSLRSEDDPSGATGTAVRFKPDI 179 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAF 232 +IFS DF+Y TL RLREL++LN V+I D+R P E Y+GGI + Sbjct: 180 EIFSGGIDFDYATLSGRLRELAYLNGGVRIVFRDEREAAKGSDGSPHEEIYHYEGGIREY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291 V+Y++ K PL I + S+D + ++ A++W D Y +++L F NNI DGGTH+ G Sbjct: 240 VTYMNAGKDPLHPDIIYVNASKDGVQVEAALQWCVDAYSDSILGFANNIRTVDGGTHIEG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 L++ LTR + ++ +K K ++ G++ REG T+VLS+K+PDP F QTK KL ++E Sbjct: 300 LKTVLTRTLNTFAKKRGKRKDTDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTE 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +V+S V + L +LE HP +I++K + A +AARRAR+L RRK VL+ ++LP Sbjct: 360 VRGIVDSVVGEALGEFLEFHPQVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI LIT LG GI + F+++ LRYH+I+IMTDADVDGAHIRTLLLTFF+R +L+ Sbjct: 480 TEIQALITGLGLGIKGEEFNLSALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEG 539 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590 G++YI PPLY + RGK+ Y +E+ L+ L G + L Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPKQLWET 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + E I + + + L+F Sbjct: 600 -----TMDPTTRTMKRVEIEDAAEADRIFTILMGDKV-APRREFIETHSAELDF 647 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 131/328 (39%), Gaps = 31/328 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLED 561 TD+++ G +IR L ++P G + + GI + + + Sbjct: 321 TDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSVVGEALGEFLEFHP 380 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQA 616 +I+ L + I+ F ++ +L R + ++ + + D + +I + Sbjct: 381 QVIDLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPSESEIYIVEG 440 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDI 662 +G + ++ LN K + + ++ Sbjct: 441 DSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITGLGLGIKGEEFNL 500 Query: 663 LVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNGDKIK- 715 R R V ++G+ I + + + + E L + G Sbjct: 501 SALRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKTLLEGGYIYIACPPLYKVERGKNHTY 560 Query: 716 ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L T+ G K ++QR+KGLGEM QLWETT++P TR++ RV+I DA++AD Sbjct: 561 CYNEQDLKKTLDGFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIEDAAEAD 620 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMGD+V PRREFI+ + + LD Sbjct: 621 RIFTILMGDKVAPRREFIETH--SAELD 646 >gi|327404490|ref|YP_004345328.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823] gi|327319998|gb|AEA44490.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823] Length = 650 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 288/601 (47%), Positives = 390/601 (64%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ +N Y AD+IQ+L+GL+AV+KRP+MYIGD G GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MSEEKKNQDYSADNIQVLEGLEAVRKRPAMYIGDI-GIKGLHHLVYEVVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV DNGRGIPT + K+EG SA E++MT LHAGGKF++ +YKVSGGL Sbjct: 60 CDTIGVWINEDNSITVKDNGRGIPTGITKKEGKSALEIVMTVLHAGGKFDKDTYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS L + R+G I+E + G + G++ + GTEVTF P Sbjct: 120 HGVGVSCVNALSIHLHAVVHRDGKIFEQEYQIGKPLYEVREIGNS-DKHGTEVTFKPDGT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----KRSPEPREITMFYKGGIEAFVSYL 236 IF ++NYDTL R+REL+FLN + I++ D + P +GG+ F YL Sbjct: 179 IFENTEYNYDTLCARMRELAFLNKGITITMTDLRELDDNGNPTSTIFHSEGGLREFAQYL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DR+++PL+ I +G R+ I +++A+ +N Y EN+ + NNI +GGTHLSG R L Sbjct: 239 DRNREPLVADVIYFEGEREGIPVEVALTYNTSYTENIQAYVNNINTHEGGTHLSGFRRGL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T + Y S ++K + GDD REG T+V+S+K+ +P+F QTK KL + EV + V Sbjct: 299 TNTLKKYATDSGMLAREKIEIDGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNREVTAPV 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V++ LS +LEEHP EAKIIV KV+ A+ R AAR+AR++ +RK V+ + LPGKLAD Sbjct: 359 SQAVSEMLSIYLEEHPNEAKIIVDKVILAARARHAARKAREMVQRKNVMTGSGLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CSE+DP E++ VEGDSAGG+AKQGR R QAI+PLRGKILNVE+A K+ ++EI Sbjct: 419 CSEKDPSLCEIYFVEGDSAGGTAKQGRDRHFQAIMPLRGKILNVEKAMHHKIFENEEIKN 478 Query: 477 LITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG IG + +I KLRYHKIIIM DADVDG+HI TL+LTFFFR M LI G Sbjct: 479 MYTALGVRIGTEEDSKALNIEKLRYHKIIIMCDADVDGSHIETLILTFFFRFMKELIELG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLR 588 ++YI PPLY + +G Y +E+ + + G ++ L Sbjct: 539 YIYIATPPLYQVKKGAKSDYAWNEDQRDILINQLKGGGADSSVNVQRYKGLGEMNAEQLW 598 Query: 589 N 589 + Sbjct: 599 D 599 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 12/211 (5%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A+ +F E + + +L ++ + A EK + I Sbjct: 447 RHFQAIMPLRGKILNVEKAMHHKIFENEEIKNMYTALGVRIGTEEDSKALNIEKLRYHKI 506 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 I++ L + F F + + I L + G K Sbjct: 507 ----IIMCDADVDGSHIETLILTFFFRFMKELIELGYIYIA---TPPLYQVKKGAKSDYA 559 Query: 718 GPCSLLDTIFSIGRKG-----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 D + + + G +++QRYKGLGEMNA QLW+TT+NP+ R+L +V I +A++ Sbjct: 560 WNEDQRDILINQLKGGGADSSVNVQRYKGLGEMNAEQLWDTTMNPEYRTLRQVTIENAAE 619 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D +FS LMGDEV PRREFI++N+ + +DI Sbjct: 620 CDQIFSMLMGDEVPPRREFIEKNAKYAKIDI 650 >gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L] gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L] Length = 635 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 292/585 (49%), Positives = 393/585 (67%), Gaps = 2/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G I Sbjct: 1 MSKQEYGADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 ++LN DGS TV DNGRGIP ++H + G+S E ++T LHAGGKF YKVSGGLHGVG Sbjct: 60 YISLNDDGSVTVRDNGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS W+ + R+G +Y + G+ L V ++GT +TF+P + IF Sbjct: 120 VSVVNALSDWVVAEVSRDGKLYRQRYEKGVTKTKLEVVDENQKESGTSITFMPDASIFDE 179 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+TL++R RELSFLN ++I DKR + + T Y GG+ +V YL+R K L Sbjct: 180 VVFSYETLEYRFRELSFLNRVIKIVFDDKRKGQEKSKTFHYTGGLIEYVKYLNRTKNTLH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I + +D+ +I+LA+++ D Y EN+ F NNI +GG HLSG ++ALT+ + Y Sbjct: 240 DQIIYVDKMQDDCTIELALQYTDAYSENIYSFANNINTHEGGVHLSGFKTALTKAMNDYA 299 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ K ++ G+D REG T+++S+K+P+P+F QTK KL ++ +R +V+S N+ + Sbjct: 300 RRNNILKDKDSNLTGEDIREGITAIVSVKLPEPQFEGQTKTKLGNTFMRGIVDSIANEEI 359 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 A++EE+P A++I+ K L + R+AA++AR+LTRRK VL+ SLPGKLADCSE+ P+K Sbjct: 360 GAFMEENPSVARVIIDKCLRSQRAREAAKKARELTRRKSVLETTSLPGKLADCSEKSPEK 419 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+FLVEGDSAGGSAK GR R QAILPLRGKILNVE++R DK+LSS+EI +ITA G G Sbjct: 420 SEIFLVEGDSAGGSAKGGRDRNIQAILPLRGKILNVEKSRLDKILSSEEIKNMITAFGCG 479 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG+D FD KLRYHKIIIMTDADVDGAHIRTLLLTFFFR M LI G++Y PPL+ I Sbjct: 480 IGED-FDEAKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEQGYVYAAMPPLFKI 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + K Y + L L G ++ N L Sbjct: 539 KKAKKEYYAYTDRELGSLLDEVGRQGTEISRYKGLGEMNANQLWE 583 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + + + ++ V + Sbjct: 452 ILNVEKSRLDKILSSEEIKNMITAFGCGIGEDFDEAKLRYHKIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + L + +GR+G + RYK Sbjct: 512 LTFFFRYMRPLIEQGYVYAAMPPLFKIKKAKKEYYAYTDRELGSLLDEVGRQGTEISRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA+QLWETT++P+ R L +V I DA AD+ FS LMGD+V PRREFI+EN+ Sbjct: 572 GLGEMNANQLWETTMDPEQRILQQVTIEDAIFADETFSMLMGDKVAPRREFIEENAKYVR 631 Query: 800 ALDI 803 LDI Sbjct: 632 NLDI 635 >gi|289431959|ref|YP_003461832.1| DNA gyrase subunit beta [Dehalococcoides sp. GT] gi|288945679|gb|ADC73376.1| DNA gyrase, B subunit [Dehalococcoides sp. GT] Length = 642 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 284/584 (48%), Positives = 391/584 (66%), Gaps = 5/584 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y A IQ+L+GL AV+KRP MYIG TD + GLHH++YE++ N++DE++ G D I Sbjct: 12 NSETYTASDIQVLEGLAAVRKRPGMYIGSTD-QRGLHHLVYEIVYNSVDEAMAGVCDRIK 70 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + DGS +V DNGRGIP +H ISA E +MT LHAG KF K+Y+VSGGLHGVG Sbjct: 71 VIMFKDGSVSVEDNGRGIPVGIHSTTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGA 130 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS W ++++R G IY+ S++ G PL G +GT F+ S IFS Sbjct: 131 SVVNALSEWTTVKVRRNGKIYQQSYLRGKPSTPLEEVG-VSEGSGTTTIFMADSQIFSTT 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++++TL RLRE+++LN +++ + D++S + R +GGI FV +L+R+++ + Sbjct: 190 EYDFETLTDRLREIAYLNKGLEVYIYDEKSDQERTYYF--EGGITGFVRHLNRNREVRHR 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI I D+ +++A+++NDGY ++ L F N + DGGTHL+G RSALTR Y Sbjct: 248 QPIYITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTRAFNDYAH 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 KS K +++GDD REG +++S+K+P+P+F QTK KL + E++S VES V + LS Sbjct: 308 KSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVESAVAEQLS 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEEHP + K I++K + A+ R+AAR+ARDL RK LD +LPGKLADCSERD Sbjct: 368 LYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCSERDASLC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A DKML+ +EI +ITAL GI Sbjct: 428 ELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 + FD +KLRY+++++MTDADVDG+HIRTLLLTFFFR MP LI L+I +PPLY I Sbjct: 488 -DNDFDPSKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIK 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G + +V ++ E L ++ G +S L Sbjct: 547 IGSTEHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWR 590 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + +A + + S + LV V + Sbjct: 459 ILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPSKLRYNRLVLMTDADVDGSHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739 F F + I + + + + + + + I + + + +QRY Sbjct: 519 LTFFFRHMPRLITESHLFIAQPPLYKIKIGSTEHWVYNDAE-KEAILAQTKSTKVDIQRY 577 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLW TT++P +R+LL VK+ DA++AD +F+ LMG EV PR+ FIQ +S Sbjct: 578 KGLGEMSAEQLWRTTMDPASRTLLEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTV 637 Query: 800 -ALDI 803 LDI Sbjct: 638 KNLDI 642 >gi|72388565|gb|AAZ67926.1| DNA gyrase subunit B [Psychrobacter fozii] Length = 729 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 321/721 (44%), Positives = 438/721 (60%), Gaps = 47/721 (6%) Query: 43 HMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTR 102 HM++EV+DN+IDE+L Y D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT Sbjct: 3 HMVFEVVDNSIDEALPWYCDQIDIIIHEDESVSVMDNGRGVPVDIHPEEGVSAAQVIMTV 62 Query: 103 LHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT 162 LHAGGKF+ SYKVSGGLHGVG+SVVNALS L++ I REG Y ++ +G+ D + Sbjct: 63 LHAGGKFDDNSYKVSGGLHGVGISVVNALSKKLEMNIWREGYHYNQTYTDGVPDADIQQ- 121 Query: 163 GSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222 A N TGT++ F PSSD+F+ F YD L RLRELSFLNS V+I L D+R + E Sbjct: 122 MEATNQTGTQIRFYPSSDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE-- 179 Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 +KGG+ FVSY++ K + + D IS+++A++W D Y+E VLCFTNNIPQ Sbjct: 180 FEHKGGLLEFVSYINAGKDGVNEVFHFTSQQDDGISVEVALQWTDTYNEKVLCFTNNIPQ 239 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 KDGGTHLSG RSALTR + SY+++ KK+K + GDD REG T+++S+K+PDP+FSSQ Sbjct: 240 KDGGTHLSGFRSALTRCLNSYMDRENLFKKEKVAATGDDAREGLTAIVSVKVPDPKFSSQ 299 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK+KLVSSEV+S VES ++D + +L E+P K I K++DA+ RDAAR+AR++TRRK Sbjct: 300 TKDKLVSSEVKSAVESAMHDKFNDYLLENPSAGKAIASKIIDAARARDAARKAREMTRRK 359 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVER Sbjct: 360 TTLDIAGLPGKLADCQEKDPVLSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVER 419 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 ARFDKMLSS E+G LITALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFF Sbjct: 420 ARFDKMLSSAEVGNLITALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFF 479 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 RQ P LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ I Sbjct: 480 RQTPELIERGYVYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADAPAI 539 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLAN 640 + L ++D + + ++ + + + + + Sbjct: 540 TGQALETLLNDYNQTQLIKARLQIRFPAVLLDALTHTPKLTTDMTNDKSAMQAWKDAMQT 599 Query: 641 RLNFIAEK---------------------------------SEKSWHGSI----NNSDIL 663 +L+ +E++ G Sbjct: 600 QLDHFGSDLSPEIKLINIHAPQPKNMDAAAADLLGMKPEVVAEETIDGEALSTKAQWLPR 659 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITG 718 + + ++L+ S I S S + + + + Sbjct: 660 ITVYVHQLAHHYLLDASFISSGEYSKLLRLSAEWNTLLESETFIRREATAGTTKNVPVRD 719 Query: 719 P 719 Sbjct: 720 F 720 >gi|296328806|ref|ZP_06871320.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154141|gb|EFG94945.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 639 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 267/592 (45%), Positives = 383/592 (64%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N+ SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEENM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + + V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CDKIEVKILPENIIEVMDNGRGIPTDIHPKYGKSAMEIVLTILHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++ G ++ + G + + V GS ++ GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVHYQKYHRGKPEENVKVIGSCDESEHGTIVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +NY TL +RL+EL++LN + I L D R E +E T + GGI F++ + + Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEEKKEETYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 DTTIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG ++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+ L +LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSSSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GT IG+ FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M LI G +YI P Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYMKDLITEGNIYIACP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY ++ GK + Y ++ L++ L + + G ++ L Sbjct: 536 PLYKVSSGKQIIYAYNDLELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWE 587 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 9/266 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I K + + + + + FI + K Sbjct: 378 KILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTSKKAEECEIFIVEGDSAGGSAK 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 +++ + + + N E +S++ + +++ + Sbjct: 438 QGRDRYNQAIL--PLRGKIINVEKAGLHKSLESSEIRAMVTAFGTSIGETFDIAKLRYGK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPC 720 ++ V + + I +F +Y + + K I Sbjct: 496 IILMTDADVDGAHI--RTLILTFLYRYMKDLITEGNIYIACPPLYKVSSGKQIIYAYNDL 553 Query: 721 SLLDTI--FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + + + K ++QRYKGLGEMN QLWETT+NPD R LL+V I +A +AD LF Sbjct: 554 ELKNILGQMNQDNKKYTIQRYKGLGEMNPEQLWETTMNPDGRLLLKVSIDNAREADMLFD 613 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 +LMGD+VEPRREFI+E++ +DI Sbjct: 614 KLMGDKVEPRREFIEEHAEYVKNIDI 639 >gi|288800604|ref|ZP_06406062.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332817|gb|EFC71297.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 657 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 280/659 (42%), Positives = 388/659 (58%), Gaps = 15/659 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 1 MSENQNIENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D+H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDIEVTINEDNSITVQDNGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K ++ R+G IY+ + G + V G N GT F P Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEQGKPLYSVKVVGET-NLRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236 IF+ + +D + R+REL++LN+ V+I+L D + R + + G++AF Y+ Sbjct: 179 SIFTTTLYKWDIISRRMRELAYLNAGVRITLTDLRLDEEGKIRREEFYAQDGLKAFARYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ ++N+ I++A+ +N Y EN+ + NNI +GGTHL+G R AL Sbjct: 239 DRHRTHLFDDVIYLKTEKNNVPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L+ +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 359 SGAVQQAVGEALADYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMTGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK SE+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + K+ S+ Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYCQAILPLRGKILNVEKVMWHKVFESE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I G LYI PPLY + + E I++ + + Sbjct: 539 VIQEGHLYIATPPLYLCSYKNKEKEYCYTEQQRQAFIDRHTEGKDDSKSIHVQRYKGLGE 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 N +A D E + A N A Sbjct: 599 MNPEQLWETTMNPQTRLLKQVTIENAAEADEIFSMLMGDDVEPRREFIEQNATYANIDA 657 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 3/77 (3%) Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G+ K I +QRYKGLGEMN QLWETT+NP TR L +V I +A++AD++FS LMGD+V Sbjct: 580 EGKDDSKSIHVQRYKGLGEMNPEQLWETTMNPQTRLLKQVTIENAAEADEIFSMLMGDDV 639 Query: 786 EPRREFIQENSLPSALD 802 EPRREFI++N+ + +D Sbjct: 640 EPRREFIEQNATYANID 656 >gi|300726297|ref|ZP_07059750.1| DNA gyrase, B subunit [Prevotella bryantii B14] gi|299776494|gb|EFI73051.1| DNA gyrase, B subunit [Prevotella bryantii B14] Length = 658 Score = 602 bits (1552), Expect = e-169, Method: Composition-based stats. Identities = 279/660 (42%), Positives = 390/660 (59%), Gaps = 16/660 (2%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N N +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQNNEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y + VT+N DGS TV DNGRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDVQVTVNEDGSITVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K ++ R+G IY+ + G P+ + G + GT F P Sbjct: 120 LHGVGVSCVNALSTHMKSQVFRDGKIYQQEYEKGKPLYPVKIVGET-DKRGTCQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSY 235 IF+ F +D + R+REL++LN+ ++I+L + + + R+ G++ FV Y Sbjct: 179 TIFTTTTFQWDIIARRMRELAYLNAGIRITLTDLRPNAETGKTRQEVFHAVEGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH+ L I ++ + + I++A+ +N Y EN+ + NNI +GGTHL+G R+A Sbjct: 239 VDRHRTHLFDDVIYLKTEKQGVPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRTA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKAYADNDSAISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + LS +LEEHP EAK I +KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VAGAVQQAVGEALSDYLEEHPSEAKAICEKVILAATARIAARKARESVQRKNVMTGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK+ E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKQCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVPWHRVFEA 478 Query: 472 QEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T FFR MP Sbjct: 479 ESVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFFRFMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY T + + I++ + + Sbjct: 539 KVIEEGHLYIATPPLYKCTFKNKVSEYCYTDQQRQAFIDKYGNGIDDGKSIHTQRYKGLG 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 N +A + D E + A N A Sbjct: 599 EMNPEQLWETTMDPTSRLLKQVTIEDAAEADETFSMLMGDDVEPRREFIEQNATYANIDA 658 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P +R L +V I DA++AD+ FS LMGD+VEPRREF Sbjct: 587 KSIHTQRYKGLGEMNPEQLWETTMDPTSRLLKQVTIEDAAEADETFSMLMGDDVEPRREF 646 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 647 IEQNATYANID 657 >gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16] gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16] Length = 640 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 301/592 (50%), Positives = 404/592 (68%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQRVKQAYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+ D S T++DNGRGIP D+H+ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCTEIHVTIGEDNSITIADNGRGIPVDVHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS WL++ + R+G I+ + G L V + TGT F P Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ F+Y+TL RLREL+FLN ++I+L D+R + Y+GGI ++V +L+R Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNEYF-YEGGIRSYVRHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I G RD I++++A+++NDGY N+ F NNI +GGTH SG + ALTR Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K + ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ Sbjct: 298 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L EHP A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 358 VFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +I Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 478 TALGTGIGED-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +GK ++Y ++ LE L + + G ++ L Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWE 588 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 29/328 (8%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558 DA++ G +R L + P+ G + + + ++ + + Sbjct: 313 DANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPA 372 Query: 559 LEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 + ++ + + K + ++L + D D I + Y Sbjct: 373 VARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGD 432 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664 + A + ++ + + + RL+ I +E G + DI Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEDFDISK 492 Query: 665 KRIAR-GVQEQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITG 718 R + + ++G+ I + F +Y R R L I G +++ Sbjct: 493 ARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAY 552 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN QLWETT+NP+TR+LL+V + DA AD+ Sbjct: 553 NDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADET 612 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR+FI+EN+ LDI Sbjct: 613 FEILMGDKVEPRRQFIEENARYVKNLDI 640 >gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302] gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735] gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302] gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735] Length = 656 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 276/649 (42%), Positives = 398/649 (61%), Gaps = 15/649 (2%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N + +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y + +TLN DGS TV DNGRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDVEITLNEDGSVTVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G GT F P Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETT-KRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 +F+ + +D + R+REL++LN+ ++I+L + R+ K G++ FV Y+ Sbjct: 179 TVFTTTTYKWDIVASRMRELAYLNAGIRITLTDLRPNEEGKTRQEVFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHL+G R+AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298 Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + LS +LEEHP+EAK I +KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 SGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKSVMTGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I +G LYI PPLY T K+ +Y E+ + ++ +E + ++ ++ Sbjct: 539 VIEDGHLYIATPPLYKCTYKKASEYCYTEQQRQAFIDKYVEGKEDDKSLHTQRYKGLGEM 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + + E I + + + + Sbjct: 599 NPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREFIEQ 647 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 3/77 (3%) Query: 729 IGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G+ K + QRYKGLGEMN QLWETT++P +R L +V I +A++AD++FS LMGD+V Sbjct: 579 EGKEDDKSLHTQRYKGLGEMNPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDV 638 Query: 786 EPRREFIQENSLPSALD 802 EPRREFI++N+ + +D Sbjct: 639 EPRREFIEQNATYANID 655 >gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 652 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 289/603 (47%), Positives = 405/603 (67%), Gaps = 16/603 (2%) Query: 1 MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ +N+S Y AD+IQ+L+GL+AV+KRPSMYIGDT G GLHH++YEV+DN+IDE++ G Sbjct: 1 MSEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEAVAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VT++ S +V DNGRGIPT ++K+E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 YCDDILVTIHEGNSISVQDNGRGIPTGINKKENKSALELVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ L + R+G I++ + G + G + TGT VTF P Sbjct: 120 LHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGESE-RTGTTVTFFPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234 +IF++ +NYDTL +RLREL+FLN ++++++D+R R+ F +GG++ FV Sbjct: 179 EIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD +++ L+ PI ++G + + ++LA+++ND Y ENV + NNI +GG+H++G R Sbjct: 239 FLDGNRQSLIPDPIYVEGIKQGVPVELALQYNDTYSENVHSYVNNINTIEGGSHVAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + LS +LEE+P EAKIIV+KV+ A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDVAVGEILSTYLEENPREAKIIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS+ DP K E+F VEGDSAGG+AKQGR R+ QAI+PLRGKILNVE+A K+ ++EI Sbjct: 419 ADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG +G KLRYHKI+IMTDADVDG+HI TL+LTF+FR M LI Sbjct: 479 KNMFTALGVSVGTPDDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586 NG++YI PPLY + +GK QY E+ + G ++ Sbjct: 539 NGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWD 601 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 9/123 (7%) Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPCS----LLDTIFSIGR-KGISMQRY 739 Y R IE Y+ L L+ G + + + + G+ + +QRY Sbjct: 529 YFRYMKELIENGYVYIATPPLYLVKKGKESQYAWTEDQRLQAIQRLKGAGKEDSVHVQRY 588 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLW+TT+NP+ R+L +V I +A++ D +FS LMGDEV PRREFI++N+ + Sbjct: 589 KGLGEMNAEQLWDTTMNPEHRTLRQVTIDNAAECDRIFSMLMGDEVAPRREFIEKNARYA 648 Query: 800 ALD 802 +D Sbjct: 649 KID 651 >gi|257783820|ref|YP_003179037.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469] gi|257472327|gb|ACV50446.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469] Length = 647 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 283/596 (47%), Positives = 386/596 (64%), Gaps = 15/596 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + Y+ I+IL+GL+AV+KRP MYIG T SGLHH+++E++DN++DE++ GY I Sbjct: 3 KENKYNGTEIKILEGLEAVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGYCSKIK 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S +V DNGRGIP DLH ++ I EV++T LHAGGKF+ +YKVSGGLHGVGV Sbjct: 62 VTIHPDNSISVEDNGRGIPVDLHPQKKIPTLEVVLTILHAGGKFDNNAYKVSGGLHGVGV 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS L ++KR+G IYEM F G + G GT +TF P IF Sbjct: 122 SVVNALSKKLVAQVKRDGKIYEMVFERGKTVQKMKEIG-TSKSNGTTITFWPDDMIFETT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK--PL 243 +N+DTL+ RL+E +FLN +++I+L+D+R PR++ Y GGI FV YL+ K P Sbjct: 181 TYNFDTLRDRLQETAFLNKNLKITLVDERELTPRQVDFQYAGGIIDFVKYLNDEKTVLPG 240 Query: 244 MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + PI I+G +++A++WN + + L F N+I ++GG HL G R+AL Sbjct: 241 LSRPIYIEGKSDPDAPMSQMGEVEVAIQWNTDFSDRTLSFANDIFTEEGGMHLEGFRTAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T+ + Y + K+ + G D REG T+V+S+K+PDP+F QTK KL SS +R++ Sbjct: 301 TKVVNDYGTRQGILKEKDPKLEGGDIREGLTAVISVKLPDPQFEGQTKAKLGSSYMRTLT 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V GLS +LEEHP +AK I+KK A+ R AAR+AR+ TRRKG+L+ A+LPGKLAD Sbjct: 361 NKIVTQGLSEYLEEHPNQAKEILKKASQAAKGRLAARKAREATRRKGLLESAALPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS RD + +ELF+VEGDSAGGSAK R R QA+LPLRGKILNVER + + LSS I + Sbjct: 421 CSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQAHRALSSDTITS 480 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+GTG+G D F + K RYHKI+IMTDADVDG+HIR LLLTFF+R M +I G++Y+ Sbjct: 481 LITAIGTGVG-DEFSLEKARYHKIVIMTDADVDGSHIRILLLTFFYRYMKPMIDAGYIYV 539 Query: 537 IKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +PPLY I + DEE + + ++ G + L Sbjct: 540 AQPPLYQIKPKGKKNGKYIYTDEELALETKKFEDNTKYTIQRYKGLGEMDPEQLWA 595 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E Q + + + + I + +V V + Sbjct: 461 ILNVERVQAHRALSSDTITSLITAIGTGVGDEFSLEKARYHKIVIMTDADVDGSHIRILL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSL-LDTIFSIGRKGISMQ 737 F + I + I + + G K I L L+T ++Q Sbjct: 521 LTFFYRYMKPMIDAGYIYVAQPPLYQIKPKGKKNGKYIYTDEELALETKKFEDNTKYTIQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEM+ QLW TT+ P R LL+V I DA AD S LMG++VE R++FIQ ++ Sbjct: 581 RYKGLGEMDPEQLWATTMEPKNRILLKVTIDDALAADRAVSDLMGNQVEKRKDFIQTHAK 640 Query: 798 PSA-LDI 803 LDI Sbjct: 641 DVRFLDI 647 >gi|255038730|ref|YP_003089351.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053] gi|254951486|gb|ACT96186.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053] Length = 651 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 297/602 (49%), Positives = 412/602 (68%), Gaps = 15/602 (2%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ ++ +SY A++IQ+L+GL+AV+KRP+MYIGDT G G+HH+I+EV+DN+IDE++ Sbjct: 1 MSNEAVLEVNSYSAENIQVLEGLEAVRKRPAMYIGDT-GFKGVHHLIWEVVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT+ + S TV DNGRGIPT +H +E SA EV++T LHAGGKF++ +YKVSG Sbjct: 60 GYCDTINVTVEKNNSITVKDNGRGIPTGMHPKENKSALEVVLTVLHAGGKFDKDTYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS L+ + REG I+E F G P V G + TGT + FLP Sbjct: 120 GLHGVGVSCVNALSIHLRAEVHREGKIFEQEFSEGKPLYPTRVIGDSE-KTGTIIHFLPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 + IF+V ++ Y+T+ RLRELS+LN ++I+L DKR + R + + G+ FV+ Sbjct: 179 ATIFTVTEYKYETIATRLRELSYLNKGIRITLEDKREEDENGQFRGEEFYSEVGLNEFVT 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YLD ++PL+ PI ++ + I +++AM +N Y ENV + NNI +GGTH+SG R+ Sbjct: 239 YLDATRQPLIPEPIHMENDKGVIPVEVAMMYNTSYSENVFSYVNNINTIEGGTHVSGFRA 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + +Y EKS K+K + GDD REG T+V+SIK+ +P+F QTK KL +SEV + Sbjct: 299 ALTRTLKNYAEKSGILAKEKVEISGDDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVTA 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V V + L +LEEHP EA++I+ KV+ A+ R AA++AR++ +RK +L LPGKL Sbjct: 359 AVSQVVAEMLENYLEEHPKEARVIIDKVILAAKARIAAKKAREMVQRKNILTGTGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 +DCSE DP EL+LVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A+ K+ ++EI Sbjct: 419 SDCSETDPNVCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAQEYKIYENEEI 478 Query: 475 GTLITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TA+G IG+D +I+KLRYHKI+IMTDAD+DG+HIRTL+LTFFFR M LI Sbjct: 479 KNMFTAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSHIRTLILTFFFRYMKILID 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDL 587 NG++YI +PPLY + +GK +Y E+ E+ + +E G ++ L Sbjct: 539 NGYIYIAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKEDSVNVQRYKGLGEMNAEQL 598 Query: 588 RN 589 Sbjct: 599 WE 600 Score = 167 bits (424), Expect = 6e-39, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 10/192 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + + E++ + +V + Sbjct: 461 ILNVEKAQEYKIYENEEIKNMFTAMGVQIGKDGDERALNIDKLRYHKIVIMTDADIDGSH 520 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-DKIKITGPCSLLDTIFSIG---R 731 + F F I + I L L+ G ++ + I IG Sbjct: 521 IRTLILTFFFRYMKILIDNGYIY-IAQPPLYLVKKGKEERYCWTEQQREEAIREIGAGKE 579 Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 +++QRYKGLGEMNA QLWETT+NP+ RSL +V + A++AD LFS LMGDEV PRR+F Sbjct: 580 DSVNVQRYKGLGEMNAEQLWETTMNPERRSLKQVSVESAAEADHLFSMLMGDEVAPRRDF 639 Query: 792 IQENSLPSALDI 803 I++N+ + +D+ Sbjct: 640 IEKNAKYARVDV 651 >gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1] Length = 644 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 284/628 (45%), Positives = 392/628 (62%), Gaps = 12/628 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y+A+ I++L+GL+AV+KRP MYIGDT G GLHH++ EV+DN+IDE++ G+ I VT Sbjct: 13 NDYNANKIKVLEGLEAVRKRPGMYIGDT-GPRGLHHLVNEVVDNSIDEAMAGFCTRIDVT 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D S TV D+GRGIPTD H G EV++TRLHAGGKF Q +Y VSGGLHGVGVS Sbjct: 72 IHKDESVTVQDDGRGIPTDPHPSNGRPTCEVVLTRLHAGGKFEQGAYSVSGGLHGVGVSA 131 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W ++ I R G F G+ L G + GT + +LP +IF Sbjct: 132 VNALSEWFEVTIARNGMERTQRFERGVPVTDLSE-GVPVDWQGTRIHYLPDKEIFEDVHH 190 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + +TL+ R EL+FLN+ V+I + D+RS E RE +GG+ AFV YL+R + L P Sbjct: 191 SLETLKSRFMELAFLNAGVRIFVTDERSSESREYHF--EGGVSAFVQYLNRDRTTLFAPP 248 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I G R++I +D+A+++ND Y E +L + N I +GGTHL GLR ALTR + Sbjct: 249 VVISGERNDIKVDMALQYNDEYQERILTYANLIHTVEGGTHLMGLRQALTRALNEAARSG 308 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 + ++ GDD +EG T VLS+K+ +P+F QTK KL +S+VR V+S V +GL + Sbjct: 309 KLLNDKEDNLTGDDLKEGLTCVLSVKLVEPQFEGQTKTKLGNSDVRGAVDSVVYEGLLSV 368 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 +EE P + IV K L A R+AA++A++L RKG + +LPGKLADCS + P+ SE+ Sbjct: 369 IEERPDIVRPIVDKALRARRAREAAKKAKELV-RKGAMTGMNLPGKLADCSSKTPENSEI 427 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQ R R QAILPLRGKILNVE+A+ KML ++EI T+ITALG GIG Sbjct: 428 YIVEGDSAGGSAKQARDRTFQAILPLRGKILNVEKAQEHKMLQNREIQTIITALGCGIG- 486 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 F+ +LRYHKIIIMTDADVDGAHI TLLLTFF+R MP L+ G++Y+ +PPLY + RG Sbjct: 487 TEFNATRLRYHKIIIMTDADVDGAHISTLLLTFFYRHMPELLTEGYIYLAQPPLYRVQRG 546 Query: 548 KSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K + Y E+ L ++ +++ G ++ L +D + Sbjct: 547 KQVHYCYTEKELRQHVDGAPDPDKVGVQRYKGLGEMNPEQLW-----MTTMDPANRILKK 601 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSL 634 + + E + + Sbjct: 602 VELDDDLLADEYFDILMGERVEPRREFI 629 Score = 140 bits (354), Expect = 8e-31, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QLW TT++P R L +V++ D AD+ F LMG+ VEPRREFI N Sbjct: 573 VQRYKGLGEMNPEQLWMTTMDPANRILKKVELDDDLLADEYFDILMGERVEPRREFITTN 632 Query: 796 SLPS-ALD 802 + + +D Sbjct: 633 ANSAKNVD 640 >gi|313157284|gb|EFR56710.1| DNA gyrase, B subunit [Alistipes sp. HGB5] Length = 653 Score = 602 bits (1551), Expect = e-169, Method: Composition-based stats. Identities = 286/605 (47%), Positives = 391/605 (64%), Gaps = 13/605 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y A +IQ+L+GL+AV+KRP+MYIGD GE GLHH++YEV+DN+IDE+L GY Sbjct: 9 KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGYCTD 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV Sbjct: 68 IDVTINEDNSITVRDNGRGIPTDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 GVS VNALS+ L I R+G IY S+ G + + V G D GT +TF P IF Sbjct: 128 GVSCVNALSTLLIAEIHSRDGKIYRQSYSKGAPTSQVEVVGECT-DRGTTITFKPDGSIF 186 Query: 183 S-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLD 237 + ++ Y+ L +RLREL+FLN + ++L DKR + E + + G++ FV YLD Sbjct: 187 TLTTEYKYEILANRLRELAFLNKGIHLNLTDKRSKDENGEYVHDNFYSEEGLKEFVQYLD 246 Query: 238 RHK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + P++ I + ++ + +++AM++ND + ENV + NNI +GGTHL+G R AL Sbjct: 247 ATRGTPIIDQIIYLDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRAL 306 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y E S K K + GDD REG T+V+S+K+ +P+F QTK KL + EV + V Sbjct: 307 TRTLKKYAEDSGMLSKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNDEVSAAV 366 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + ++ L +LEE+P +AK IV+KV+ A+ R AAR AR++ +RK VL A LPGKLAD Sbjct: 367 DQAMSSALGHYLEENPKDAKAIVQKVILAATARHAARHAREMVQRKTVLSGAGLPGKLAD 426 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C+ RD +E+F VEGDSAGG+AK GR R QAI+PLRGKILN+E+A+ +M ++EI Sbjct: 427 CTSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKN 486 Query: 477 LITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 + TALG IG + KLRY KIIIMTDADVDG+HI TL+LTFFFR+M LI NG Sbjct: 487 MFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENG 546 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI PPLY + +GK +Y E+ + I+ + + + ++ Sbjct: 547 HVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGKGVHIQRYKGLGEMNAHQLWDTTMN 606 Query: 593 DALKI 597 +I Sbjct: 607 PDTRI 611 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 6/187 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + E+ K+ + D ++ V Sbjct: 467 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 526 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735 + F F K K + N L L+ G + + DTI + KG+ Sbjct: 527 IATLMLTFFF-RKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDTISAEFGKGVH 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLW+TT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI++N Sbjct: 586 IQRYKGLGEMNAHQLWDTTMNPDTRILRQVNIENAAEADRIFSMLMGDEVPPRREFIEKN 645 Query: 796 SLPSALD 802 + + +D Sbjct: 646 AHYANID 652 >gi|110598305|ref|ZP_01386580.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031] gi|110340113|gb|EAT58613.1| DNA gyrase, B subunit [Chlorobium ferrooxidans DSM 13031] Length = 649 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 285/590 (48%), Positives = 398/590 (67%), Gaps = 10/590 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 S+Y A++IQ+L G++ V+ RP+MYIGD GLHH++YE++DN+IDE+L G+ D I Sbjct: 13 TAPSTYGANNIQVLDGIEHVRMRPAMYIGDIHS-RGLHHLVYEIVDNSIDETLGGFNDYI 71 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V LN +GS TV D GRGIP D+H E+ SA E++MT + AGGKF++ +YKVSGGLHGVG Sbjct: 72 FVALNPEGSVTVIDRGRGIPVDIHPEKQKSALELVMTVIGAGGKFDKGAYKVSGGLHGVG 131 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS W ++ + R+GN+Y F GI + V + GT+ TF+P IF Sbjct: 132 ASVVNALSEWCEVEVYRDGNVYFQRFERGIPQGDVRVI-GKTDKKGTKTTFMPDHQIFKT 190 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F D + R+REL+FLN + I++ + E + Y GGI+ FV + D+++ L+ Sbjct: 191 TEFRKDIIIDRMRELAFLNKELSITV---QDTEGIDEIFHYVGGIKEFVQFTDQNRINLL 247 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + PI + G RD+ +++A+++ND Y ENV + NNI +GGTH++G R ALTR + +Y Sbjct: 248 KEPIYLYGERDSTIVEIALQYNDSYQENVFSYVNNINTHEGGTHVTGFRKALTRTLNAYA 307 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K+ K K S+ GDD +EG T+V+S+K+ +P+F QTK KL +SE +S+VE+ VN+ L Sbjct: 308 QKNDLLKNLKLSLTGDDFKEGLTAVISVKVAEPQFEGQTKTKLGNSETQSIVETIVNEQL 367 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + E +P K+I++KV A+M R+AAR+A++LTRRK VL+ + LPGKLADCS DP+ Sbjct: 368 AEFAESNPNVLKMIIEKVKGAAMSREAARKAKELTRRKSVLESSGLPGKLADCSINDPEH 427 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 EL++VEGDSAGGSAKQGR R QAILPL+GKILNVE+AR KML ++EI T+I ALGT Sbjct: 428 CELYIVEGDSAGGSAKQGRDRSFQAILPLKGKILNVEKARLHKMLENEEIKTIILALGTS 487 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 G++ F KLRY KIIIMTDADVDGAHIRTLLLTFFFR M SLI G ++I +PPLY + Sbjct: 488 FGEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGRVFIAQPPLYLV 547 Query: 545 TRGKSLQYVKDEESLEDY-----LINQSLSEEIELFCDSKGVISKNDLRN 589 GK QY D++ + + + G ++ L + Sbjct: 548 KSGKEQQYAWDDDERNSITESMKKMQKGKANIHIQRYKGLGEMNPEQLWS 597 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E+ + ++ V + F F I + R+ L L+ Sbjct: 489 GEEEFSTEKLRYGKIIIMTDADVDGAHIRTLLLTFFFRHMRSLIEAGRVF-IAQPPLYLV 547 Query: 709 CNGDKIKI-------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +G + + + G+ I +QRYKGLGEMN QLW TT++P RS Sbjct: 548 KSGKEQQYAWDDDERNSITESMKK-MQKGKANIHIQRYKGLGEMNPEQLWSTTMDPAHRS 606 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL V + +A +AD +FS LMGD+VEPRREFI++N+ LD+ Sbjct: 607 LLLVNVENAMEADQVFSTLMGDKVEPRREFIEKNARYVRRLDV 649 >gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2] gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2] Length = 640 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 301/592 (50%), Positives = 404/592 (68%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQRVEQAYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+ D S T++DNGRGIP D+H+ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCTEIHVTIGEDNSITIADNGRGIPVDVHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS WL++ + R+G I+ + G L V + TGT F P Sbjct: 120 LHGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPRTDLQVIDET-DRTGTTTRFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ F+Y+TL RLREL+FLN ++I+L D+R + Y+GGI ++V +L+R Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLTDERVDNRKNEYF-YEGGIRSYVRHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I G RD I++++A+++NDGY N+ F NNI +GGTH SG + ALTR Sbjct: 238 TREVLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K + ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ Sbjct: 298 IINDYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L EHP A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 358 VFSEQFETFLLEHPAVARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +I Sbjct: 418 SRDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 478 TALGTGIGED-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +GK ++Y ++ LE L + + G ++ L Sbjct: 537 PPLYKIEQGKQVRYAYNDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWE 588 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 29/328 (8%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558 DA++ G +R L + P+ G + + + ++ + + Sbjct: 313 DANLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLEHPA 372 Query: 559 LEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 + ++ + + K + ++L + D D I + Y Sbjct: 373 VARKIVEKGMMAARARVAAKKARELTRRKSALEISNLPGKLADCSSRDPSISELYVVEGD 432 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664 + A + ++ + + + RL+ I +E G + DI Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITALGTGIGEDFDISK 492 Query: 665 KRIAR-GVQEQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITG 718 R + + ++G+ I + F +Y R R L I G +++ Sbjct: 493 ARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRELIERGYIYIAQPPLYKIEQGKQVRYAY 552 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN QLWETT+NP+TR+LL+V + DA AD+ Sbjct: 553 NDRQLEKILAELPAQPKPMIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIDADET 612 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR+FI+EN+ LDI Sbjct: 613 FEILMGDKVEPRRQFIEENARYVKNLDI 640 >gi|310777811|ref|YP_003966144.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926] gi|309747134|gb|ADO81796.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926] Length = 634 Score = 601 bits (1550), Expect = e-169, Method: Composition-based stats. Identities = 267/584 (45%), Positives = 393/584 (67%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S+Y A++I +L+GL+AV+KRP MYIG T GLHH+++E++DN++DESL GY + I + Sbjct: 2 SNYQAENITVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSVDESLAGYCNKIEIK 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D VSDNGRGIP +H + G SA E+++T LHAGGKF +YKVSGGLHGVGVSV Sbjct: 61 VLKDNIIEVSDNGRGIPVGIHPKHGKSALEIVLTVLHAGGKFENSNYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W ++ +KR+G I+ + G+ + + V G N+TGT V F S+IF ++ Sbjct: 121 VNALSEWTEVFVKRDGKIHNQRYNRGVPEFDVKVVGKT-NETGTTVRFKADSEIFETLEY 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++D L+ RL+E+++LN ++I LID+R E +E + + GGI F+ ++ + L+ P Sbjct: 180 DFDVLKSRLKEMAYLNKGLEIVLIDERKEEIKEEILKFDGGIVDFIKEVEEGQATLIPEP 239 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I + G ++I +++A+ + + E + F NNI +GGTH+SG R ALTR I + Sbjct: 240 IYMAGESEDIIVEIAILYTEKQRETIYSFVNNINTHEGGTHVSGFRMALTRIINEMAKSL 299 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K+ + G D REG T+++SIK+P+P+F QTK KL +SEV +VV S + L Sbjct: 300 GLLKERDGNFQGQDIREGVTAIISIKVPEPQFEGQTKTKLGNSEVTAVVSSIMGQFLKMH 359 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 +E+HP +A+ I++++L + R+AA++AR+L RK L++ SLPGKLADCS + P++SE+ Sbjct: 360 MEDHPSDARNIIERILMSRKAREAAKKARELVMRKSALEVGSLPGKLADCSSKKPEESEV 419 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAKQGR R QAILPLRGKI+NVE++ K L + E+ +++TA G IG Sbjct: 420 FIVEGDSAGGSAKQGRDRHTQAILPLRGKIINVEKSGLHKALENNEVRSMVTAFGANIGD 479 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D ++ KLRYHKIIIMTDADVDGAHIRTL+LTFF+R M LIH G++YI +PPL+ +T G Sbjct: 480 DL-ELEKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQPPLFKVTAG 538 Query: 548 KSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 +++QY ++ L++ + G ++ + L Sbjct: 539 RTIQYAYSDKQLKEITTVMDADNKRYTLQRYKGLGEMNPDQLWE 582 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 14/263 (5%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + ++ L + + +S+ I + D + Sbjct: 383 AAKKARELVMRKSALEVGSLPGKLADCSSKKPEESEVFIVEGDSAGGSAKQGRDRHTQAI 442 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E++ + + + + + + + L + K + Sbjct: 443 LPLRGKIINVEKSGLHKALENNEVRSMVTAFGANIGDDLELEKLRYHK-----------I 491 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL- 722 + V + F + I I + + L Sbjct: 492 IIMTDADVDGAHIRTLILTFFYRYMVDLIHGGYIYIAQPPLFKVTAGRTIQYAYSDKQLK 551 Query: 723 -LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + T+ K ++QRYKGLGEMN QLWETT+N DTR+LL+V I DA +AD LF +LM Sbjct: 552 EITTVMDADNKRYTLQRYKGLGEMNPDQLWETTMNHDTRTLLQVTIDDAREADILFDKLM 611 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD+VEPRR FI+E+S LDI Sbjct: 612 GDKVEPRRNFIEEHSHFVKNLDI 634 >gi|257065525|ref|YP_003151781.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548] gi|256797405|gb|ACV28060.1| DNA gyrase, B subunit [Anaerococcus prevotii DSM 20548] Length = 633 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 405/585 (69%), Gaps = 5/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +Q+++YDA +I++L+GL+ V+ RP MYIG T E GLHH++YEV+DN++DE+L G D I Sbjct: 1 MQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTS-EKGLHHLVYEVVDNSVDEALAGRCDYI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D V D+G GIP H S E ++T LHAGGKF+ +Y+ SGGLHGVG Sbjct: 60 KVTVTKDNVIKVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYQFSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS +L +KR+G+IY+M+F G + + L + G ++TGT +TF P +IF Sbjct: 120 VSVVNALSEYLIAEVKRDGHIYKMTFAKGEVTSDLEIIGDT-DETGTTITFKPDGEIFDT 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+ TL++R RE++FLN V+I L D+R + + Y+GGI+ FV+YL+R+K P+M Sbjct: 179 TIFDRKTLENRFREMAFLNKGVEIILEDER--DDFSESFKYEGGIKEFVTYLNRNKTPIM 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + G +++I ++++ ++ DGY EN+L + NNI +GGTHLSG RSALTR + Y Sbjct: 237 EQVPHFDGMQEDIEVEVSFQYTDGYSENILTYANNIHTPEGGTHLSGFRSALTRTVNDYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K++ ++ GDD REG T+V+SIK+ DP+F QTK KL +SEVR V++FV+ L Sbjct: 297 RNFKFLKENDENLQGDDIREGITAVVSIKISDPQFEGQTKAKLGNSEVRGAVDTFVSQRL 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 A+LEE+P AK I++K L + R+AAR+ARDLTR++ +LD +LPGKLADC D + Sbjct: 357 QAYLEENPKPAKNIIEKALASRRAREAARKARDLTRKRSILDSTTLPGKLADCQSTDLSE 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+S+EI +ITA GTG Sbjct: 417 NEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKANLDRILNSEEIKAMITAFGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +Y+ +PPLY I Sbjct: 477 IGKE-FDISKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKPLIDEGHVYVAQPPLYKI 535 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + G++ +YV + + L ++ G ++ + L + Sbjct: 536 SHGRNERYVYTDAERDKVLKELNVDNYKINRYKGLGEMNADQLWD 580 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + K + S ++ V + Sbjct: 449 IMNVEKANLDRILNSEEIKAMITAFGTGIGKEFDISKLRYGKIIIMTDADVDGAHIRTLL 508 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + ++ + + + + RYK Sbjct: 509 LTFFYRYMKPLIDEGHVYVAQPPLYKISHGRNERYVYTDAERDKVLKELNVDNYKINRYK 568 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKIT-DASQADDLFSRLMGDEVEPRREFIQENSLPS 799 GLGEMNA QLW+TT++PD R LLRV D++ DD FS LMG++VEPRR FIQEN+ Sbjct: 569 GLGEMNADQLWDTTMDPDHRVLLRVNEDLDSTSTDDTFSLLMGEKVEPRRNFIQENAKYV 628 Query: 800 -ALDI 803 +D+ Sbjct: 629 SNIDV 633 >gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275] gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM 13275] Length = 633 Score = 601 bits (1549), Expect = e-169, Method: Composition-based stats. Identities = 294/583 (50%), Positives = 398/583 (68%), Gaps = 3/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G I V Sbjct: 2 KQEYGASQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGNCSKIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV D+GRGIP ++H + G+S E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 AINADGSITVEDDGRGIPVEVHPKTGLSTLETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL + R+G Y + G L V G + + TGT ++F+P +++F + Sbjct: 121 VVNALSEWLVAEVHRDGKAYRQEYKKGNPQTKLEVVGESDH-TGTIISFMPDAEVFDEIE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F++DTL++RLRELSFLN ++I DKR + + Y GG+ +V +L++ + + + Sbjct: 180 FSFDTLEYRLRELSFLNKGIKIIFEDKREGKEKYRDFHYTGGLVEYVKFLNKSRTGIHED 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + I D+ +++AM++ DGY EN+ F NNI +GG+HL+G ++ALT+ I Y ++ Sbjct: 240 IVYIDKKVDDCLVEIAMQYTDGYTENIYSFANNINTHEGGSHLAGFKAALTKTINEYAKR 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K ++ G+D REG T+V+S+K+PDP+F QTK KL ++ +R +V+ + L + Sbjct: 300 NGALKDKDSNLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTFMRGIVDGVTVEELGS 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P AK+IV K L A R+AA+RAR+LTRRK VL+ SLPGKLADCSE+DP KSE Sbjct: 360 FLEENPNTAKVIVDKALRAQRAREAAKRARELTRRKSVLESTSLPGKLADCSEKDPSKSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +FLVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L+S EI +ITA G GIG Sbjct: 420 IFLVEGDSAGGSAKQGRDRNTQAILPLRGKILNVEKSRLDKILASDEIKNMITAYGCGIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD+ K RYHKIIIMTDADVDGAHIRTLLLTFFFR M LI G++Y +PPLY +T+ Sbjct: 480 ND-FDLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIEEGYVYAAQPPLYKVTK 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K YV ++ L+D L + G ++ L + Sbjct: 539 QKKEYYVYSDKELDDLLNEIGRDKYDIQRYKGLGEMNPEQLWD 581 Score = 193 bits (491), Expect = 9e-47, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + ++ V + Sbjct: 450 ILNVEKSRLDKILASDEIKNMITAYGCGIGNDFDLEKARYHKIIIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + + L D + IGR +QRYK Sbjct: 510 LTFFFRYMRPLIEEGYVYAAQPPLYKVTKQKKEYYVYSDKELDDLLNEIGRDKYDIQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLW+TT+NP+TR+LL+V I DA+ AD++FS LMGD+V PRREFIQEN+ Sbjct: 570 GLGEMNPEQLWDTTMNPETRTLLQVTIEDAAIADEIFSMLMGDKVAPRREFIQENAKYVR 629 Query: 800 ALDI 803 LD+ Sbjct: 630 NLDV 633 >gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae DSM 15606] gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae DSM 15606] Length = 656 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 279/649 (42%), Positives = 399/649 (61%), Gaps = 15/649 (2%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N + +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQNSEANYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y + +TLN DGS TV DNGRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDVEITLNEDGSVTVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ R+G IY+ + G P+ V G GT F P Sbjct: 120 LHGVGVSCVNALSTHMLSQVFRDGKIYQQEYEKGKPLYPVKVVGETT-KRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYL 236 IF+ + +D + R+REL++LN+ ++I+L D R E R+ K G++ FV Y+ Sbjct: 179 TIFTTTTYKWDIVASRMRELAYLNAGIRITLTDMRHDEEGKIRQEVFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHL+G R+AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298 Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKAYADAEPTIAKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + LS +LEEHP+EAK I +KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 SGAVQQAVGEALSNYLEEHPIEAKKICEKVVLAATARIAARKARESVQRKNVMTGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I +G LYI PPLY T K +Y E+ + ++ +E + ++ ++ Sbjct: 539 VIEDGHLYIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYVDGKEDDKGLHTQRYKGLGEM 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + + E I + + + + Sbjct: 599 NPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREFIEQ 647 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 58/71 (81%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG+ QRYKGLGEMN QLWETT++P +R L +V I +A++AD++FS LMGD+VEPRREF Sbjct: 585 KGLHTQRYKGLGEMNPEQLWETTMDPKSRLLKQVTIQNAAEADEIFSMLMGDDVEPRREF 644 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 645 IEQNATYANID 655 >gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum SI] gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum thermopropionicum SI] Length = 643 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 318/635 (50%), Positives = 424/635 (66%), Gaps = 10/635 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N NS Y A+ IQIL+GL+AV++RP MYIG T GLHH++YEV+DN+IDE++ G+ Sbjct: 9 TSNNNNSKYGAEEIQILEGLEAVRRRPGMYIGSTSA-RGLHHLVYEVVDNSIDEAMAGFC 67 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V LN DGS TV DNGRGIP D+H + G A EV+MT LHAGGKF YKVSGGLH Sbjct: 68 DRIEVILNEDGSATVIDNGRGIPVDIHPKTGRPAVEVVMTMLHAGGKFGGGGYKVSGGLH 127 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS WL++ +KR+G +Y + GI L+V G + TGT+VTF+P +I Sbjct: 128 GVGVSVVNALSLWLEVEVKRDGKVYYQRYSRGIPVTGLLVKGKSS-ATGTKVTFMPDPEI 186 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F FN D L RLRELSFLN V+I L D+RS + + GGI FV YL++ K Sbjct: 187 FEDLIFNQDILAQRLRELSFLNMGVKIILKDRRSGQET--VFQHDGGIMDFVRYLNKSKT 244 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 PL PI IQ +D++ +++A+++ D Y E++L + NNI DGGTH +G ++ALTR I Sbjct: 245 PLHGKPIYIQKQKDDVLVEVALQYTDTYVESILSYANNINTIDGGTHEAGFKAALTRVIN 304 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K K ++ G+D REG T+V+S+K+P+P+F QTK KL +SEVRS+V+S V Sbjct: 305 DYGRKYNLLKNGAGNLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEVRSIVDSVVG 364 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 +GL +LEE+P A+ I++K + AS R+AAR+AR+LTRRK L+ ++LPGKLADCSERD Sbjct: 365 EGLGIFLEENPSIARRILEKAVTASRAREAARKARELTRRKSALEGSTLPGKLADCSERD 424 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI +ITAL Sbjct: 425 PSVSELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIRAMITAL 484 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ FD++K RYHKII+M+DADVDGAHIRTLLLTFF+R M LI G+++I +PPL Sbjct: 485 GTGIGEE-FDVSKARYHKIILMSDADVDGAHIRTLLLTFFYRYMRPLIEKGYVFIAQPPL 543 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK +Y + LE L G ++ L +D Sbjct: 544 YRVKKGKLEKYAYSDAELEKLLDQIGRDGVSIQRYKGLGEMNAEQLWET-----TMDPET 598 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + + IE + + + + + Sbjct: 599 RTVMQVNLEDAIEADAVFSMLMGDRVEPRRDFIQE 633 Score = 185 bits (470), Expect = 3e-44, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + + S ++ V + + Sbjct: 460 ILNVEKARLDKILANEEIRAMITALGTGIGEEFDVSKARYHKIILMSDADVDGAHI--RT 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFS-IGRKGISMQR 738 + +F +Y R + K++ L+ + IGR G+S+QR Sbjct: 518 LLLTFFYRYMRPLIEKGYVFIAQPPLYRVKKGKLEKYAYSDAELEKLLDQIGRDGVSIQR 577 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMNA QLWETT++P+TR++++V + DA +AD +FS LMGD VEPRR+FIQEN+ L Sbjct: 578 YKGLGEMNAEQLWETTMDPETRTVMQVNLEDAIEADAVFSMLMGDRVEPRRDFIQENARL 637 Query: 798 PSALDI 803 LDI Sbjct: 638 VRNLDI 643 >gi|302391744|ref|YP_003827564.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] gi|302203821|gb|ADL12499.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501] Length = 637 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 285/636 (44%), Positives = 411/636 (64%), Gaps = 6/636 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+A+ IQ+L+GL+AV+KRP MYIG T G GLHH+++E +DN+IDE L G+ + I Sbjct: 4 QKELDYNAEQIQVLEGLEAVRKRPGMYIGST-GTKGLHHLVWEAVDNSIDEFLAGHGEEI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + +V D GRGIP ++H ++ + AA++++T LHAGGKF+ YKVSGGLHGVG Sbjct: 63 KVKIKEGSIISVEDQGRGIPVEVHPDKKLPAAQLVLTTLHAGGKFDSSGYKVSGGLHGVG 122 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS WL+L I R G Y + G+ + S TGT++ F P DIF Sbjct: 123 ISVVNALSEWLELTIWRNGYTYTQQYEKGVPVTEFEKSNSTT-KTGTKIEFKPDEDIFDN 181 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + +D L +RL+E +FLN ++ISL+D R +E+T Y GG+EAF+ YL++ + L Sbjct: 182 VKYKFDVLANRLQESAFLNKGLKISLVDTRPGLEKEVTYQYDGGLEAFIDYLNQDRDLLH 241 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + ++ D+ +++A ++N ++E + F NNI DGG HL+G ++ALTR +Y Sbjct: 242 DDIVYLEEEVDDTYVEVAFQYNKSFNERIYSFANNINTHDGGYHLTGFKTALTRAFNNYA 301 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + KK + G D REG T+V+++K+ +P+F QTK KL +SE+RSVVE V + L Sbjct: 302 KDNNLLKKSDPKLTGRDLREGLTAVVNVKLTEPQFEGQTKAKLGNSEIRSVVEGAVYNYL 361 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L H AK ++ K L+A R AA++A++LT+RKGVL+ SLPGKL+DCS R ++ Sbjct: 362 NQYLPRHHDMAKEVINKALEAVKARKAAKKAKELTKRKGVLNNNSLPGKLSDCSSRKSEE 421 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL+LVEGDSAGGSAKQGR+R+ QAILPL+GKILNVERAR +K++++ EI +ITALGTG Sbjct: 422 SELYLVEGDSAGGSAKQGRNRDFQAILPLKGKILNVERARLNKIINNNEIAAIITALGTG 481 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ F+I+KLRYHKIIIMTDADVDGAHI TL+LT F+R MP LI G +Y+ +PPLY + Sbjct: 482 IGEE-FNIDKLRYHKIIIMTDADVDGAHICTLILTLFYRYMPELIREGHVYVAQPPLYKV 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN--FIDDALKIDKLIK 602 T +Y+ ++ L+ YL + S+ G ++ + L + K+ +++ Sbjct: 541 TYRGDEEYIYTDKQLQKYLADLDRSKVSIQRYKGLGEMNPSQLWETTMNPENRKLQEIMV 600 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 D D F E N LAS L Sbjct: 601 DEEREADSIFTRLMGSKAKLRREFIM-ANADLASNL 635 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 12/192 (6%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672 +E+A ++ + N I +L + + N + K ++ V Sbjct: 457 VERARLNKIINNNEIAAIITALGTGIGEEFNIDKLRYHK-----------IIIMTDADVD 505 Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 + + + I + + + GD+ I L + + R Sbjct: 506 GAHICTLILTLFYRYMPELIREGHVYVAQPPLYKVTYRGDEEYIYTDKQLQKYLADLDRS 565 Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 +S+QRYKGLGEMN SQLWETT+NP+ R L + + + +AD +F+RLMG + + RREFI Sbjct: 566 KVSIQRYKGLGEMNPSQLWETTMNPENRKLQEIMVDEEREADSIFTRLMGSKAKLRREFI 625 Query: 793 QENS-LPSALDI 803 N+ L S LD+ Sbjct: 626 MANADLASNLDV 637 >gi|291513912|emb|CBK63122.1| DNA gyrase subunit B [Alistipes shahii WAL 8301] Length = 652 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 290/604 (48%), Positives = 392/604 (64%), Gaps = 12/604 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y A +IQ+L+GL+AV+KRP+MYIGD GE GLHH++YEV+DN+IDE+L GY Sbjct: 9 KKQEEEYSASNIQVLEGLEAVRKRPAMYIGDI-GEKGLHHLVYEVVDNSIDEALAGYCTD 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV DNGRGIPTD H++EG SA EV++T LHAGGKF++ SYKVSGGLHGV Sbjct: 68 IDVTINEDNSITVRDNGRGIPTDYHEKEGKSALEVVLTVLHAGGKFDKGSYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIK-REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 GVS VNALS+ L I R+G IY ++ G + + V G D GT +TF P IF Sbjct: 128 GVSCVNALSTLLIAEIHSRDGKIYRQTYSKGAPTSQVEVVGECT-DRGTIITFKPDGSIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYLDR 238 + + YD L +RLREL+FLN + ++L DKR E RE + + G++ FV YLD Sbjct: 187 THTTEYKYDILANRLRELAFLNKGISLNLYDKRPDEEGKTREDHFYSEEGLKEFVKYLDA 246 Query: 239 HK-KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + P+++ I + ++ + +++AM++ND + ENV + NNI +GGTHL+G R ALT Sbjct: 247 TRGTPIVEQIIYLDTEKNGVPVEVAMQYNDSFSENVHSYVNNINTIEGGTHLTGFRRALT 306 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y E S K K + GDD REG T+V+S+K+ +P+F QTK KL + EV + V+ Sbjct: 307 RTLKKYAEDSGMLAKLKFDINGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNDEVAAAVD 366 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + L +LEE+P +AK IV+KV+ A+ R AAR AR+L +RK VL A LPGKLADC Sbjct: 367 QALASALGDYLEENPKDAKAIVQKVILAATARHAARHARELVQRKTVLSGAGLPGKLADC 426 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S RD +E+F VEGDSAGG+AK GR R QAI+PLRGKILN+E+A+ +M ++EI + Sbjct: 427 SSRDRSIAEIFFVEGDSAGGTAKSGRDRNFQAIMPLRGKILNIEKAQEHRMWENEEIKNM 486 Query: 478 ITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 TALG IG + KLRY KIIIMTDADVDG+HI TL+LTFFFR+M LI NG Sbjct: 487 FTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSHIATLMLTFFFRKMKELIENGH 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI PPLY + +GK +Y E+ ++ I+ + + + ++ Sbjct: 547 VYIATPPLYLVKKGKQERYCWTEKERDEISAEFGKGVHIQRYKGLGEMNAHQLWETTMNP 606 Query: 594 ALKI 597 +I Sbjct: 607 DTRI 610 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 6/187 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E QE + ++ N + E+ K+ + D ++ V Sbjct: 466 ILNIEKAQEHRMWENEEIKNMFTALGVTIGTEEDSKALNLEKLRYDKIIIMTDADVDGSH 525 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS 735 + F F K K + N L L+ G + + D I + KG+ Sbjct: 526 IATLMLTFFF-RKMKELIENGHVYIATPPLYLVKKGKQERYCWTEKERDEISAEFGKGVH 584 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NPDTR L +V I +A++AD +FS LMGDEV PRREFI+ N Sbjct: 585 IQRYKGLGEMNAHQLWETTMNPDTRILRQVNIENAAEADRIFSMLMGDEVPPRREFIERN 644 Query: 796 SLPSALD 802 + + +D Sbjct: 645 AHYANID 651 >gi|307298739|ref|ZP_07578542.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915904|gb|EFN46288.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 631 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 272/580 (46%), Positives = 380/580 (65%), Gaps = 5/580 (0%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y+A +I+ILKGLD V+KRP MYIG T G+SGLHH++YE++DN+IDE++ G+ D I + + Sbjct: 5 YNAQNIKILKGLDPVRKRPGMYIGST-GKSGLHHLVYEIVDNSIDEAMGGFCDRINIVIT 63 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS VSDNGRGIP D+H + G SA EV+MT LHAGGKF++ SYK+SGGLHGVG SVVN Sbjct: 64 EDGSVIVSDNGRGIPIDIHPDTGTSALEVVMTTLHAGGKFSKDSYKISGGLHGVGASVVN 123 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS W+ + + +G IY + G P+ V G N+TGT +F P +F+V DF++ Sbjct: 124 ALSEWMIVEVMVDGKIYRQKYERGKALAPVEVVGET-NETGTVTSFKPDPLVFTVTDFDF 182 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 D L+ R +EL++LN ++I+ D+R E R +GGI FV L ++KK + + PI Sbjct: 183 DILEARFKELAYLNGGIKITFEDRRIGEKRSYHF--EGGIVEFVKALTKNKKSIHKDPIY 240 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 ++G+ +++ I LAM++ Y E++L F NNI +GGTHL+G ++ LT+ + K Sbjct: 241 LEGTYNDVKIQLAMQYTSSYDEDILTFVNNIKTIEGGTHLTGFKTVLTKTMNDVGRKHNV 300 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 K ++ G+D REG +++LS+ + +P+F QTK KL + E V V + L + + Sbjct: 301 LKDKDPNLQGEDLREGLSAILSVFVKEPQFEGQTKAKLGNDEAFEAVMKVVKEKLEEYFD 360 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429 + + K I+ K L+AS R AA++AR++ RRK L+ +LPGKLADC + ++E+F+ Sbjct: 361 YNQKDLKAILSKALEASRARLAAKKAREMVRRKNALENTTLPGKLADCISENLDETEIFI 420 Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489 VEGDSAGGSAK RSRE QAILPLRGKILNVE+A D+ML S+ I +I ALGTG+G+D Sbjct: 421 VEGDSAGGSAKMARSRETQAILPLRGKILNVEKAGLDRMLKSETISNIIVALGTGMGED- 479 Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 F+I LRY KIIIMTDADVDGAHI TLLLT F+R M LI NG +Y+ + PLY I + Sbjct: 480 FEIKNLRYGKIIIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQAPLYKIELNRQ 539 Query: 550 LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 Y +E L +L S + G ++ L Sbjct: 540 KHYFYSDEELTTFLKEHSDRKLNYSRFKGLGEMNPEQLWE 579 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 98/261 (37%), Gaps = 12/261 (4%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + L + E +++ I + D + + Sbjct: 382 AAKKAREMVRRKNALENTTLPGKLADCISENLDETEIFIVEGDSAGGSAKMARSRETQAI 441 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + E+ I V+L + + + K + Sbjct: 442 LPLRGKILNVEKAGLDRMLKSETISNIIVALGTGMGEDFEIKNLRYGK-----------I 490 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + + I + ++ + + N K L Sbjct: 491 IIMTDADVDGAHITTLLLTLFYRYMTPLITNGKVYVAQAPLYKIELNRQKHYFYSDEELT 550 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + + ++ R+KGLGEMN QLWETT+NP+ R L+++ I DA +AD +F+ LMG Sbjct: 551 TFLKEHSDRKLNYSRFKGLGEMNPEQLWETTMNPNDRKLVKITIEDAEEADRVFTILMGS 610 Query: 784 EVEPRREFIQENSLP-SALDI 803 EVE RR FIQ ++L S LD+ Sbjct: 611 EVEERRSFIQRHALSISNLDV 631 >gi|33864631|ref|NP_896190.1| DNA gyrase subunit B [Synechococcus sp. WH 8102] gi|33632154|emb|CAE06610.1| DNA gyrase subunit B [Synechococcus sp. WH 8102] Length = 655 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 292/661 (44%), Positives = 410/661 (62%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VTL DGS ++SDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDRILVTLGEDGSASISDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L ++ TGT V F Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLASEDQPASEAGETGTTVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IF+ F+Y TL RLREL++LN V+I D+R E E T FY+GGI Sbjct: 180 PDIEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARNEVGEAHEETYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNTEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V +GLS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGEGLSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R +L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKAL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L + G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMTAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 10/175 (5%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSK 688 +K+ A + + D+ R R V + F + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + I + + + L T+ S G K ++QR+KGLGEM Sbjct: 537 KALVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLQSFGEKANYTIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ + + LD Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SAELD 649 >gi|212550383|ref|YP_002308700.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548621|dbj|BAG83289.1| DNA gyrase subunit B [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 644 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 291/640 (45%), Positives = 405/640 (63%), Gaps = 19/640 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y AD+IQ+L+G++AV+KRP+MYIGD G+ GLHH++YEV+DN+IDE+L GY I V + Sbjct: 3 EYKADNIQVLEGIEAVRKRPAMYIGDI-GQKGLHHLVYEVVDNSIDETLAGYCKNIQVFI 61 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV D+GRGIP D H++E SA EV++T LHAGGKF++ SYKVSGGLHGVGVS V Sbjct: 62 NDDNSVTVKDDGRGIPVDFHEKEKRSALEVVLTVLHAGGKFDKNSYKVSGGLHGVGVSCV 121 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS++L+ ++R+G IY F G + N L + G ND GT +TF P S IF V ++ Sbjct: 122 NALSAYLRAEVRRDGKIYAQEFSCGKVTNELTIIGET-NDRGTTITFKPDSSIFIVTEYK 180 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 YD L RLRELSFLN+ V++ L DKR + + + G+ FV ++D K+PL+ Sbjct: 181 YDILASRLRELSFLNAGVRLELTDKRVSFVNGTFKHEIFYSSEGLSEFVRFIDSAKQPLI 240 Query: 245 -QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I I + I +++AM +N Y+E++ + NNI + GTH++G R ALTR + Y Sbjct: 241 GNDIIHIITEKQGIPVEIAMTYNTSYNESISSYVNNINTIEHGTHVAGFRRALTRTLKKY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 S +K K + DD REG T+V+SIK+ +P+F QTK KL ++E V+ V Sbjct: 301 AVDSKLLEKIKIEISPDDFREGLTAVISIKVQEPQFEGQTKTKLGNNEAIGAVDQAVGTA 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS +LEEHP EAK IV KV+ A+M R AAR AR++ +RK L LPGKLADCS+R+P+ Sbjct: 361 LSVYLEEHPKEAKTIVDKVVLAAMARHAARNAREMVQRKSPLAGGGLPGKLADCSDRNPE 420 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K E+FLVEGDSAGG+AKQGR R+ QAILPLRGKILNVE+A K+L + EI + TALG Sbjct: 421 KCEIFLVEGDSAGGTAKQGRERKYQAILPLRGKILNVEKAMPYKVLENSEIRNIFTALGV 480 Query: 484 GIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 IG +I+KLRYHK++IMTDADVDG+HI TL+LTFFFR M +I G++YI P Sbjct: 481 TIGTTEDSKGLNIDKLRYHKVVIMTDADVDGSHIATLILTFFFRHMRLMIEKGYVYIATP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALK 596 PLY + +GK +Y ++ + ++ + +E ++ G ++ L + Sbjct: 541 PLYLLKKGKVEEYCWTDQQRQAFIDKYARGDEKQVHTQRYKGLGEMNAQQLWDT-----T 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ ++ + E + + E + Sbjct: 596 MNPEVRTLKRVTIENAAEADRVFAILMGEDVTPRREFIED 635 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 39/67 (58%), Positives = 57/67 (85%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLW+TT+NP+ R+L RV I +A++AD +F+ LMG++V PRREFI++N+ Sbjct: 578 QRYKGLGEMNAQQLWDTTMNPEVRTLKRVTIENAAEADRVFAILMGEDVTPRREFIEDNA 637 Query: 797 LPSALDI 803 + + +D+ Sbjct: 638 IYANIDV 644 >gi|28896290|ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogenes SSI-1] gi|161485752|ref|NP_664280.2| DNA gyrase subunit B [Streptococcus pyogenes MGAS315] gi|73919729|sp|Q8K840|GYRB_STRP3 RecName: Full=DNA gyrase subunit B gi|28811541|dbj|BAC64473.1| putative DNA gyrase B subunit [Streptococcus pyogenes SSI-1] Length = 650 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 276/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF SYKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|126697571|ref|YP_001086468.1| DNA gyrase subunit B [Clostridium difficile 630] gi|254977347|ref|ZP_05273819.1| DNA gyrase subunit B [Clostridium difficile QCD-66c26] gi|255094677|ref|ZP_05324155.1| DNA gyrase subunit B [Clostridium difficile CIP 107932] gi|255102904|ref|ZP_05331881.1| DNA gyrase subunit B [Clostridium difficile QCD-63q42] gi|255308724|ref|ZP_05352895.1| DNA gyrase subunit B [Clostridium difficile ATCC 43255] gi|255316431|ref|ZP_05358014.1| DNA gyrase subunit B [Clostridium difficile QCD-76w55] gi|255519091|ref|ZP_05386767.1| DNA gyrase subunit B [Clostridium difficile QCD-97b34] gi|255652274|ref|ZP_05399176.1| DNA gyrase subunit B [Clostridium difficile QCD-37x79] gi|260681774|ref|YP_003213059.1| DNA gyrase subunit B [Clostridium difficile CD196] gi|306521988|ref|ZP_07408335.1| DNA gyrase, B subunit [Clostridium difficile QCD-32g58] gi|115249008|emb|CAJ66819.1| DNA gyrase subunit B [Clostridium difficile] gi|260207937|emb|CBA60049.1| DNA gyrase subunit B [Clostridium difficile CD196] Length = 633 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 295/583 (50%), Positives = 399/583 (68%), Gaps = 3/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A IQ+L+GL+AV+KRP MYIG T GLHH++YEV+DN+IDE+L+GY I V Sbjct: 2 KQEYGASQIQVLEGLEAVRKRPGMYIGSTS-PRGLHHLVYEVVDNSIDEALQGYCSDIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N DGS V DNGRGIP ++H + G S E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 SINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+ + G IY+ ++ G+ + L V G + D GT + F+P IF + Sbjct: 121 VVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGES-QDKGTMIQFMPDETIFDEIE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+TL++RLRELSFLN ++I DKR + + Y GG+ ++ YL++ + + Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDD 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + I D+ ++LAM++ DGY EN+ F NNI +GG+HLSG ++ALT+ + Y ++ Sbjct: 240 IVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKR 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K++ +++G+D REG T+V+S+K+P+P+F QTK KL +S +R +V+S D L + Sbjct: 300 NKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGS 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P A+IIV K L A R+AA++AR+LTRRK VL+ SLPGKLADC+E+DP KSE Sbjct: 360 FLEENPSTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPSKSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +FLVEGDSAGGSAKQGR R +QAILPLRGKILNVE++R D++LSS EI +ITA G GIG Sbjct: 420 IFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M LI G++Y +PPLY +T+ Sbjct: 480 ED-FDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTK 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K YV ++ L L + G ++ L Sbjct: 539 QKKEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWE 581 Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + + ++ V + Sbjct: 450 ILNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + + L + IGR G+ +QRYK Sbjct: 510 LTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT+NP+TR+LL+V + DA+ AD++FS LMGD+V PR+EFI+EN+ Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|124021870|ref|YP_001016177.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9303] gi|123962156|gb|ABM76912.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9303] Length = 655 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 290/661 (43%), Positives = 405/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS++ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH+++EV+DN++DE+L G Sbjct: 1 MSEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVFEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L DGS +++DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDEILVVLGPDGSASIADNGRGIPTDVHSRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L S TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229 P +IF+V F+Y TL RLREL++LN V+I D+R P E FY+GGI Sbjct: 180 PDEEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K L I + +DN+ ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVTYMNAEKDALHPEIIYVNSEKDNVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ K K+ ++ G++ REG T+VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD LRYH+++IMTDADVDGAHIRTL+LTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEADLQTTLSGFPEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPSTRMMKRVEVQDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + + +V V + F + + + + I + + Sbjct: 499 EEFDAKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKELVEGGYIYIACPPLYKVERG 558 Query: 711 GDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L T+ K ++QR+KGLGEM QLWETT++P TR + RV++ D Sbjct: 559 KNHTYCYNEADLQTTLSGFPEKANYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRVEVQD 618 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 A +AD +F+ LMGD+V PRREFI+ +S +ALDI Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655 >gi|33862394|ref|NP_893954.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9313] gi|33640507|emb|CAE20296.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9313] Length = 655 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 291/661 (44%), Positives = 405/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS++ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH+++EV+DN++DE+L G Sbjct: 1 MSEDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVFEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L DGS ++SDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDEILVVLGPDGSASISDNGRGIPTDVHSRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L S TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGTAIGSLRSEAQPASEKGRTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229 P +IF+V F+Y TL RLREL++LN V+I D+R P E FY+GGI Sbjct: 180 PDEEIFTVGIVFDYATLSTRLRELAYLNGGVRIVFRDERQPVLDAEGAPHEEVYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K L I + +DN+ ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVTYMNAEKDALHPEIIYVNSEKDNVQVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ K K+ ++ G++ REG T+VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTLNTFARKRGKRKEADSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGEALSQYLEFNPAVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD LRYH+++IMTDADVDGAHIRTL+LTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDSKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPSARMMKRVEVQDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 7/189 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E + + +++ + + K E+ ++ +++ V + Sbjct: 468 ILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDSKNLRYHRVVI-MTDADVDGAHIRT 526 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQ 737 F + + + + I + + + L T+ K ++Q Sbjct: 527 LILTFFYRYQKELVEGGYIYIACPPLYKVERGKNHTYCYNEVDLQTTLSGFPEKANYTIQ 586 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM QLWETT++P R + RV++ DA +AD +F+ LMGD+V PRREFI+ +S Sbjct: 587 RFKGLGEMMPKQLWETTMDPSARMMKRVEVQDALEADRIFTILMGDKVAPRREFIETHSA 646 Query: 798 P---SALDI 803 +ALDI Sbjct: 647 ELDMAALDI 655 >gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella multiformis DSM 16608] gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella multiformis DSM 16608] Length = 657 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 281/650 (43%), Positives = 400/650 (61%), Gaps = 16/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N +N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I V++N D S TV D+GRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCKNIEVSINEDNSVTVEDDGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS +K ++ R+G IY+ + G P+ V G + TGT F P + Sbjct: 120 LHGVGVSCVNALSSHMKSQVFRDGKIYQQEYEKGKPLYPVKVVGET-DKTGTRQQFWPDA 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF+ F +D + R+REL++LN+ ++I+L D R + + R K G++ FV Y Sbjct: 179 GIFTTTVFQWDIVARRMRELAYLNAGIKITLSDLRPDPETGKTRTEVFHAKDGLKEFVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKTEKQNIPIEVAVMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SE Sbjct: 299 LTRTLKAYADNDPQISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + LS +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALSNYLEEHPNEAKLICNKVILAATARVAARKARESVQRKNVMSGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G + + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEDEGDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY T K +Y ++ + +L E ++ + Sbjct: 539 KVIEQGHLYIATPPLYKCTYKKVSEYCYTDQQRQAFLDKYGNGVEDGKTIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + I + + + + Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEK 648 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEKNATYANID 656 >gi|296452676|ref|ZP_06894367.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP08] gi|296880071|ref|ZP_06904040.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP07] gi|296258458|gb|EFH05362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP08] gi|296428938|gb|EFH14816.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Clostridium difficile NAP07] Length = 633 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 295/583 (50%), Positives = 401/583 (68%), Gaps = 3/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A IQ+L+GL+AV+KRP MYIG T GLHH++YEV+DN+IDE+L+GY I V Sbjct: 2 KQEYGASQIQVLEGLEAVRKRPGMYIGSTS-PRGLHHLVYEVVDNSIDEALQGYCSDIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N DGS V DNGRGIP ++H + G S E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 SINEDGSVLVKDNGRGIPVEIHPKTGKSTLETVLTNLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS W+ + G IY+ ++ G+ + L V G + +D GT + F+P IF + Sbjct: 121 VVNALSKWMVAEVYLNGKIYKQTYEKGLPTSKLEVVGES-HDKGTMIQFMPDETIFDEIE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+TL++RLRELSFLN ++I DKR + + Y GG+ ++ YL++ + + Sbjct: 180 FKYETLEYRLRELSFLNKGIKIVFEDKREGQEKRKEFHYTGGLVEYIKYLNKSRTGIHDD 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + I D+ ++LAM++ DGY EN+ F NNI +GG+HLSG ++ALT+ + Y ++ Sbjct: 240 IVYIDKKVDDCFVELAMQYTDGYTENIYSFANNINTHEGGSHLSGFKAALTKTVNDYAKR 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K++ +++G+D REG T+V+S+K+P+P+F QTK KL +S +R +V+S D L + Sbjct: 300 NKFLKENDVNLLGEDIREGLTAVVSVKLPEPQFEGQTKTKLGNSFMRGIVDSVTVDELGS 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P+ A+IIV K L A R+AA++AR+LTRRK VL+ SLPGKLADC+E+DP KSE Sbjct: 360 FLEENPVTARIIVDKALRAQRAREAAKKARELTRRKSVLESTSLPGKLADCAEKDPAKSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +FLVEGDSAGGSAKQGR R +QAILPLRGKILNVE++R D++LSS EI +ITA G GIG Sbjct: 420 IFLVEGDSAGGSAKQGRDRNSQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGIG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M LI G++Y +PPLY +T+ Sbjct: 480 ED-FDIDKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRPLIDEGYVYAAQPPLYKVTK 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K YV ++ L L + G ++ L Sbjct: 539 QKKEHYVYSDKELNILLDEIGRNGVELQRYKGLGEMNAEQLWE 581 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ N + + + ++ V + Sbjct: 450 ILNVEKSRLDRILSSDEIKNMITAYGCGIGEDFDIDKARYHKIIIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + + + + L + IGR G+ +QRYK Sbjct: 510 LTFFFRYMRPLIDEGYVYAAQPPLYKVTKQKKEHYVYSDKELNILLDEIGRNGVELQRYK 569 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLWETT+NP+TR+LL+V + DA+ AD++FS LMGD+V PR+EFI+EN+ Sbjct: 570 GLGEMNAEQLWETTMNPETRTLLQVTVEDAAIADEVFSMLMGDKVAPRKEFIEENARFVR 629 Query: 800 ALDI 803 LDI Sbjct: 630 NLDI 633 >gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna ATCC 53516] gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna ATCC 53516] Length = 638 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 279/550 (50%), Positives = 376/550 (68%), Gaps = 4/550 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +N Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G D+I Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D S V D+G GIP + H + G S E ++T LHAGGKF+ +Y+ SGGLHGVG Sbjct: 61 KVTIKKDNSVIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS++L R+KR+G +YE F G L V TGT + F+P + IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTELTVIKENVRGTGTTIEFMPDNTIFET 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R RE++FLN V+I D+R E + Y+GGI++FV Y+++ KKPL Sbjct: 181 LNFDKNVLAKRFREMAFLNKGVKIEFADER--EGYKELFHYEGGIKSFVEYINKSKKPLD 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I+G +D +++AM++ + Y+E ++ FTNNI DGGTH+ G +SALTR + Y Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ ++ GDD REG T+V+S+K+ +P+F QTK KL +SE R+VV+S V + L Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P K I++K L + R AARRARDL R+K VLD +LPGKLADC D + Sbjct: 359 SFYFEENPKIVKTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEH 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+FLVEGDSAGGSAK GR + QAILPLRGKILNVE+A +++L+S EI +ITA GTG Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSNEIKAMITAFGTG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M L+ G +YI +PPLYGI Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537 Query: 545 TRGKSLQYVK 554 +G + Sbjct: 538 IKGVKVMEYC 547 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 3/75 (4%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPR 788 R I +QRYKGLGEMNA QLW+TT+NP+ R L++V+I D ++ D+ F LMGD VEPR Sbjct: 563 RSNIKVQRYKGLGEMNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPR 622 Query: 789 REFIQENSLPS-ALD 802 REFI++N++ + +D Sbjct: 623 REFIEQNAVYAQNID 637 >gi|302872928|ref|YP_003841561.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B] gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B] gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B] Length = 636 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 407/591 (68%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D SYDA IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MTDK--KQSYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 58 CKNIDVIIHEDNSISVKDDGRGMPVGMHAKMNRPAVEVIMTILHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS + + +G I+ F G + L V G + GTEV F P + Sbjct: 118 HGVGASVVNALSETCIVTVSIDGKIHRQEFHRGNVATELEVIGETE-EHGTEVFFTPDHE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F+YDTL RLREL+FLN + IS+ D+R+ + + Y GGI++FVSYL+R+K Sbjct: 177 IFETLEFDYDTLVQRLRELAFLNKGINISIEDRRNDKS--DSFHYDGGIKSFVSYLNRNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L PI I+G +++I +++A+++ND Y EN+ F NNI +GGTHL+G ++A+TR I Sbjct: 235 EALFPEPIYIEGIQNDILVEIALQYNDTYQENIFSFANNIDTAEGGTHLAGFKNAMTRVI 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K++ +++ G+D REG T+++S+K+P+P F QTK KL +SEVR +V+S + Sbjct: 295 NDYARKFGFLKENDKNLSGEDVREGLTAIISVKIPEPEFEGQTKTKLGNSEVRGIVDSIL 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +S +LEE+P KIIV K L AS R+AA++AR+LTRRK +L+ SLPGKLADCS + Sbjct: 355 GGSVSTFLEENPSVGKIIVDKALTASRAREAAKKARELTRRKSILESTSLPGKLADCSSK 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP + E+++VEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ R DK+L S I ++ITA Sbjct: 415 DPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTIRSMITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG+D FD++KLRYH+IIIMTDADVDGAHIRTLLLTFF+R M +I G +YI +PP Sbjct: 475 FGAGIGKD-FDLDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRYMRDMIEKGHVYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589 LY ++R K Y +++ L+D L + + + G + L + Sbjct: 534 LYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTVIQRYKGLGEMDAQQLWD 584 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 14/238 (5%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + + + I + D + + +E+ + + ++ + Sbjct: 410 DCSSKDPSECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGSDTIR 469 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + + + + ++ V + F + Sbjct: 470 SMITAFGAGIGKDFDLDKLRYHR-----------IIIMTDADVDGAHIRTLLLTFFYRYM 518 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746 I + + + N + L D + IG K S +QRYKGLGEM+ Sbjct: 519 RDMIEKGHVYIAQPPLYKVSRNKKEWYAYNDDELKDILKDIGGKDNSTVIQRYKGLGEMD 578 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 A QLW+TT++P+ R LL+V + +A AD++F+ LMG++VEPRREFIQEN+ LD+ Sbjct: 579 AQQLWDTTMDPEHRLLLKVDMGEAMMADEIFTILMGEKVEPRREFIQENAKNVVNLDV 636 >gi|78211642|ref|YP_380421.1| DNA gyrase subunit B [Synechococcus sp. CC9605] gi|78196101|gb|ABB33866.1| DNA gyrase, B subunit [Synechococcus sp. CC9605] Length = 655 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 291/661 (44%), Positives = 406/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L DGS +VSDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDRIVVVLGEDGSASVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L +TGT V F Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGVLASESQPAAESGETGTTVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IF+ F+Y TL RLREL++LN V+I D+R P E T FY+GGI Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDGEGNPHEETYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y+++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNKEKDALHPDIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVIGLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 11/179 (6%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694 +K+ A + + D+ R R V ++G+ I + + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536 Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + E L + G L T+ G K ++QR+KGLGEM Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S +ALDI Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655 >gi|33241245|ref|NP_876187.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238775|gb|AAQ00840.1| DNA gyrase B subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 658 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 282/636 (44%), Positives = 395/636 (62%), Gaps = 18/636 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G+ Sbjct: 6 TVQKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNAVDEALAGHC 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V L DGS ++SDNGRGIPTD+H + G SA E ++T LHAGGKF YKVSGGLH Sbjct: 65 NEIVVVLCSDGSASISDNGRGIPTDVHPKTGKSALETVLTVLHAGGKFGSGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPS 178 GVGVSVVNALS W+++ ++R+G+I+ F G L T TGT+V F P Sbjct: 125 GVGVSVVNALSEWVEVTVRRQGHIHNQRFERGAPIGNLRSTKQPVSEKKLTGTKVNFKPD 184 Query: 179 SDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEA 231 +DIF+ F+Y L RLREL++LN V+I D+R + E FY+GGI+ Sbjct: 185 TDIFTTGIVFDYSILSSRLRELAYLNGGVKIVFRDERQSVSDKEEKAYEEVYFYEGGIKE 244 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +V+Y++ K L I + ++ + ++ A++W D Y +++L F NNI DGGTH+ Sbjct: 245 YVAYMNSEKDALHPEIIYVNSEKEGVQVEAALQWCIDAYSDSILGFANNIRTVDGGTHIE 304 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 GL++ LTR + S+ K K ++ G++ REG T VLS+K+P+P F QTK KL ++ Sbjct: 305 GLKTVLTRTLNSFARKRGKRKDGDSNLAGENIREGLTVVLSVKVPEPEFEGQTKTKLGNT 364 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+S V + L+ +LE +P +I++K + A +AARRAR+L RRK VL+ +L Sbjct: 365 EVRGIVDSLVGESLAQYLEFNPSVIDLILEKAIQAFNAAEAARRARELVRRKSVLESTTL 424 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 425 PGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYK 484 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI LIT LG GI + F + LRYH+++IMTDADVDGAHIRTLLLTFF+R L+ Sbjct: 485 NTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVE 544 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI PPLY + RGK+ Y +E L+ + + G + L Sbjct: 545 GGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGEKANYTIQRFKGLGEMMPKQLWE 604 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 +D + + +E I + + Sbjct: 605 T-----TMDPSTRMMKRVEIEDALEADRIFTILMGD 635 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 10/175 (5%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694 +K+ A + + + R R V ++G+ I + + + Sbjct: 480 AKIYKNTEIQALITGLGLGIKGEDFSLKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 539 Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + E L + G L TI S G K ++QR+KGLGEM Sbjct: 540 KELVEGGYVYIACPPLYKVERGKNHTYCYNEGDLQKTITSFGEKANYTIQRFKGLGEMMP 599 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 QLWETT++P TR + RV+I DA +AD +F+ LMGD+V PRREFI+ + LD Sbjct: 600 KQLWETTMDPSTRMMKRVEIEDALEADRIFTILMGDKVAPRREFIETH--SVELD 652 >gi|260436552|ref|ZP_05790522.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109] gi|260414426|gb|EEX07722.1| DNA gyrase, B subunit [Synechococcus sp. WH 8109] Length = 655 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 292/661 (44%), Positives = 406/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSDASKVQNAYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L DGS VSDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDRILVVLGEDGSAAVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L +TGT V F Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGELASESQPAAESGETGTTVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IF+ F+Y TL RLREL++LN V+I D+R +P E T FY+GGI Sbjct: 180 PDLEIFTGGIVFDYATLSARLRELAYLNGGVRIVFRDERESARDEEGKPHEETYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y+++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNKEKDALHPEIIYVNSEKDGVQVEAALQWCSDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPGESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + IE I + + + L+ A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDAIEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 11/179 (6%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694 +K+ A + + D+ R R V ++G+ I + + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQ 536 Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + E L + G L T+ G K ++QR+KGLGEM Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEGDLQKTLEGFGEKANYTIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 QLWETT++P TR++ RV+I DA +AD +F+ LMGD+V PRREFI+ +S +ALDI Sbjct: 597 KQLWETTMDPTTRTMKRVEIEDAIEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655 >gi|116071704|ref|ZP_01468972.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107] gi|116065327|gb|EAU71085.1| DNA topoisomerase IV subunit B [Synechococcus sp. BL107] Length = 655 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 293/661 (44%), Positives = 407/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + + Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSDASKVQNEYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D ITV L DGS +V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDRITVILGADGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL--VVTGSAGN-DTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L A +TGT V FL Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGSLLSESQSEAEQGETGTTVCFL 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P IF+ F+Y TL RLREL++LN VQI D+R +P E FY+GGI Sbjct: 180 PDLQIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDEREASLSDAGDPHEEIYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y+++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNKAKDALHPDIIYVNSEKDGVQVEAALQWCADAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKDADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGEALSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD LRYH+++IMTDADVDGAHIRTL+LTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L + + G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPSTRMMKRIEIEDALEADRIFTILMGDKV-APRREFIETHSKELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + I + + + + L L + K E+ S+ Sbjct: 452 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALG-LGIKGEEFDQKSLRYHR 510 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 +++ V + F + K + + I + + + Sbjct: 511 VVI-MTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCYNESD 569 Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L T+ G ++QR+KGLGEM QLWETT++P TR + R++I DA +AD +F+ L Sbjct: 570 LQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRIFTIL 629 Query: 781 MGDEVEPRREFIQENSLP---SALDI 803 MGD+V PRREFI+ +S +ALDI Sbjct: 630 MGDKVAPRREFIETHSKELDMAALDI 655 >gi|295402119|ref|ZP_06812078.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1] gi|294975802|gb|EFG51421.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1] Length = 640 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 299/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQKVEHTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+ DGS TV+DNGRGIP D+ ++ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCTEINVTIEKDGSITVTDNGRGIPVDIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L++ + R+G I+ + G+ L V G + TGT V F P Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLQVVGET-DRTGTTVHFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ F+Y+TL RLREL+FLN ++I+L DKR + Y+GGI+++V +L+R Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE-YCYEGGIQSYVKHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I G RD I +++A ++ND Y N+ F NNI +GGTH SG + ALTR Sbjct: 238 TREVLHEEPIYIIGERDGIYVEIAFQYNDSYSSNIYSFVNNIHTHEGGTHESGFKMALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K + ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ Sbjct: 298 IINDYARKQQIFKDNDPNLTGEDVREGLTAIVSIKHPAPQFEGQTKTKLGNSDARTVTDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 358 VFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SEL++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+LS+ E+ +I Sbjct: 418 SKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M I G++YI + Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I + K ++Y ++ LE L + + G ++ L Sbjct: 537 PPLYKIEQDKQVRYAYNDRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWE 588 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 143/378 (37%), Gaps = 51/378 (13%) Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKII--------IMTDADVD--GAHIRTLLLTF 520 S I + + + T G K+ +II I D D + G +R L Sbjct: 269 SSNIYSFVNNIHTHEGGTHESGFKMALTRIINDYARKQQIFKDNDPNLTGEDVREGLTAI 328 Query: 521 FFRQMPSLIHNGF----------------LYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 + P+ G ++ + + + + + ++ + Sbjct: 329 VSIKHPAPQFEGQTKTKLGNSDARTVTDAVFSEQFETFLLENPTIARKIVEKGMMAARAR 388 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 + S IS +L + D D I + Y + A + Sbjct: 389 LAAKKARELTRRKSALEIS--NLPGKLADCSSKDPSISELYVVEGDSAGGSAKQGRDRHF 446 Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVL 677 ++ + + + RL+ I +E G + DI R + + + Sbjct: 447 QAILPLRGKIINVEKARLDKILSNNEVRAIITALGTGIGEDFDITKARYHKIIIMTDADV 506 Query: 678 EGSSIFS----FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRK 732 +G+ I + F +Y R F R DK L+ I + Sbjct: 507 DGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLYKIEQDKQVRYAYNDRQLEKILAE--- 563 Query: 733 GI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + ++QRYKGLGEMN QLWETT+NP+TR+LL+V + DA +AD+ F LMGD+VE Sbjct: 564 -LPENPKPTIQRYKGLGEMNPEQLWETTMNPETRTLLQVSLQDAIEADETFEILMGDKVE 622 Query: 787 PRREFIQENSLPS-ALDI 803 PRR+FI+EN+ LDI Sbjct: 623 PRRQFIEENARYVKNLDI 640 >gi|42525521|ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405] gi|4033400|sp|O87545|GYRB_TREDE RecName: Full=DNA gyrase subunit B gi|3676691|gb|AAC62070.1| DNA gyrase subunit B [Treponema denticola] gi|41815532|gb|AAS10500.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405] gi|325475358|gb|EGC78543.1| DNA gyrase subunit B [Treponema denticola F0402] Length = 638 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 280/637 (43%), Positives = 412/637 (64%), Gaps = 13/637 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y A++I +LKGL+AV+KRP MYIG T G GLHH++YEV+DN IDE++ G+ D I Sbjct: 1 MTKSNYSANNITVLKGLEAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGFCDKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L + V DNGRGIP D+H E ISA E+++TRLHAGGKF++ SYKVSGGLHGVG Sbjct: 60 LVVLEPNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS W++ ++ ++G + F G + P+ G +GT + + IF+ Sbjct: 120 VSVVNALSVWMEAKVYKDGFEHYAKFEKGSILEPVKKIGETE-KSGTVIRWAVDPSIFTE 178 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N++ L RLREL+FLNS + I++ D+R P+E+T ++GGI FVSYL+ K+ Sbjct: 179 TTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFAFEGGISQFVSYLNESKQVF 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +SP+ I+G +++I ++A+++NDGY+EN+L F N+I ++GGTHL G ++ALTR + + Sbjct: 239 PKSPVFIEGEKNDILCEVAIQYNDGYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDF 298 Query: 304 VEKSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 ++K + + G+D R G T+++S+K+P+P+F QTK KL +S+VR +V+SFV Sbjct: 299 LKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ L+ + E++P E + +++K + + R AARRA++ TRRK LD LPGKLADCS + Sbjct: 359 NEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP+ E+++VEGDSAGGSAK+GR + QAILPL GK+LNVE+ R DK+++++++ +I Sbjct: 419 DPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIAT 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D F+I KLRYHK+IIM DADVDG+HIRTLLLTFFFR MP +I G +Y+ PP Sbjct: 479 LGTGIGKD-FNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY I+ K YV +++ + L + G + L +D Sbjct: 538 LYKISHNKKEWYVYNDDERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWET-----TMDP 592 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +E I E + + Sbjct: 593 ARRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEE 629 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + K ++ ++ V + Sbjct: 455 MLNVEKTRLDKVVNNEKLQPIIATLGTGIGKDFNIEKLRYHKVIIMADADVDGSHIRTLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F F + I + + + N + + D++ +G ++QR Sbjct: 515 LTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDDER-DSVLDQIGRGNNAAVQR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ +QLWETT++P R ++RV + DA +AD +FS LMG+EVEPRR+FI+EN++ Sbjct: 574 YKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEENAVY 633 Query: 799 SALDI 803 + LD+ Sbjct: 634 ANLDV 638 >gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2] gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2] Length = 647 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 282/636 (44%), Positives = 407/636 (63%), Gaps = 12/636 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + SY AD IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 13 EDKVDHSYTADDIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGFAT 71 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ + V DNGRG+PT + ++ GIS E I T LHAGGKF +YKVSGGLHG Sbjct: 72 DIEITIEKNNIIRVEDNGRGMPTGIVEKTGISGVETIFTVLHAGGKFGGGAYKVSGGLHG 131 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALS WL++ + + G+ + + F + G PL + + G+ V F +I Sbjct: 132 VGASVVNALSEWLEVNVHQNGHEFFLRFEDGGKATGPLKIINDSE-KHGSIVRFKADPEI 190 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F +++DTL R+R+L+FLN S+++ L D+R EP+ I Y GGI +V YL+++K Sbjct: 191 FQETQEYDFDTLNARIRQLAFLNKSIRLVLCDEREAEPKRIEYKYDGGIRQYVEYLNKNK 250 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + + ++G D I ++AM++NDGY ++ F NNI +GGTH G R ALTR I Sbjct: 251 TPLHEEVVYVEGIEDGILAEIAMQYNDGYIPSIYSFCNNINTMEGGTHEDGFRLALTRII 310 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K ++ GDD REG T+++S+K PDP++ QTK KL +SEVR +V S + Sbjct: 311 NAYAREQGMIK-KDETLAGDDVREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIVSSIL 369 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + E+P AKIIV K + AS R AA++AR+LTRRK L+I SLPGKLADCS + Sbjct: 370 GEQLDRFFMENPETAKIIVDKAILASKARLAAKKARELTRRKSALEITSLPGKLADCSSK 429 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D + E+++VEGDSAGGSAKQGR+ + QAILPLRGKILNVE+AR ++ + EI ++ITA Sbjct: 430 DASECEIYIVEGDSAGGSAKQGRNSKFQAILPLRGKILNVEKARLQRIFENNEIRSMITA 489 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ D++KLRYHKIIIMTDADVDGAHI TL+LTFF+R + +I G++YI PP Sbjct: 490 FGCGIGEEM-DVSKLRYHKIIIMTDADVDGAHICTLMLTFFYRYLRPIIEGGYVYIAMPP 548 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 L+ + +G ++YV EE +E + + ++ + G ++ L +D Sbjct: 549 LFKVAKGNRVEYVYKEEEVETVRASMGENVNVQRY-KGLGEMNPEQLWET-----TMDPA 602 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + +E I + E + + Sbjct: 603 FRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQE 638 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739 + +F +Y R I + L + G++++ ++T+ + + +++QRY Sbjct: 524 LMLTFFYRYLRPIIEGGYVYIAMPPLFKVAKGNRVEYVYKEEEVETVRASMGENVNVQRY 583 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT++P R+L +V I DA +AD +F LMG+EVEPRR+FIQEN++ + Sbjct: 584 KGLGEMNPEQLWETTMDPAFRTLKQVNIDDAMEADSIFEMLMGEEVEPRRDFIQENAIYA 643 Query: 800 ALDI 803 LDI Sbjct: 644 TLDI 647 >gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5] Length = 641 Score = 598 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 296/586 (50%), Positives = 394/586 (67%), Gaps = 4/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +N+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ I Sbjct: 4 ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIH 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V +N D S TV+DNGRGIP ++ + GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 63 VDINPDNSITVTDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184 SVVNALS WL++ I REG Y+ + G PL V G +GT+V FLP +IF Sbjct: 123 SVVNALSEWLEVTIYREGKEYKQRYERGKTMYPLKVVGDCDPGLSGTKVYFLPDKEIFEE 182 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YD L+ RLRE++FL ++I L DKR + RE Y+GGI FVSYL+R K+ L Sbjct: 183 TVYDYDILKQRLREMAFLTKGLRIVLEDKREGQEREKVFHYEGGIREFVSYLNRSKEALY 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +G +D +S+++A++ ND Y EN F NNI +GGTH++G R+A+T Y Sbjct: 243 PEIIYCEGEKDGVSVEVALQHNDSYTENTYGFVNNINTPEGGTHITGFRNAITNTFNDYA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K + ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V+S V+ L Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE++P AK V+K + A R+AAR+ARDLTRRK LD SLPGKLADCS+++P+ Sbjct: 363 EIFLEQNPAVAKATVEKSVLAQRAREAARKARDLTRRKSALDSMSLPGKLADCSDKNPEN 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK R+R QAILPLRGKILNVE+AR DK+ ++EI +ITA GTG Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDKIYGNKEIKAMITAFGTG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 483 IHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y D++ L + L G + L Sbjct: 542 EKNKKVWYAYDDDELNNILTEIGRDGNNKIQRYKGLGEMDAEQLWE 587 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 481 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + + IGR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 541 VEKNKKVWYAYDDDELNNILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +A+ + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 601 TMDEAATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLDI 641 >gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium spiritivorum ATCC 33861] gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium spiritivorum ATCC 33861] Length = 652 Score = 598 bits (1543), Expect = e-168, Method: Composition-based stats. Identities = 287/603 (47%), Positives = 406/603 (67%), Gaps = 16/603 (2%) Query: 1 MSDNIQNSS-YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ +N+S Y AD+IQ+L+GL+AV+KRPSMYIGDT G GLHH++YEV+DN+IDE++ G Sbjct: 1 MSEEKKNTSTYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEAVAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y + I VT++ S +V DNGRGIPT ++K+E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 YCNDILVTIHEGNSISVQDNGRGIPTGINKKENKSALELVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ L + R+G I++ + G + G + TGT VTF P Sbjct: 120 LHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKAIGESE-RTGTTVTFFPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234 +IF++ +NYDTL +RLREL+FLN ++++++D+R R+ F +GG++ FV Sbjct: 179 EIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREILDDGSFRKDVFFSEGGLQEFVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD +++ L+ +PI ++G + + ++LA+++ND Y ENV + NNI +GG+H++G R Sbjct: 239 FLDGNRQSLISNPIYVEGIKQGVPVELALQYNDTYSENVHSYVNNINTIEGGSHVAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + Y E S K K + GDD REG T+V+S+K+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKKYAEDSGLLKNLKVEIAGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + LS +LEE+P EAK+IV+KV+ A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDVAVGEILSTYLEENPREAKMIVQKVVIAAQARAAARKAREMVQRKTVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS+ DP K E+F VEGDSAGG+AKQGR R+ QAI+PLRGKILNVE+A K+ ++EI Sbjct: 419 ADCSDNDPHKCEIFFVEGDSAGGTAKQGRDRKFQAIMPLRGKILNVEKAMEHKIYENEEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG +G KLRYHKI+IMTDADVDG+HI TL+LTF+FR M LI Sbjct: 479 KNMFTALGVSVGTADDAKALNLEKLRYHKIVIMTDADVDGSHIATLILTFYFRYMKELIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKND 586 NG++YI PPLY + +GK +Y EE + G ++ Sbjct: 539 NGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWD 601 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 9/123 (7%) Query: 689 YKRIFSNRIEENYL----TILSLICNGDKIKITGPCS----LLDTIFSIGR-KGISMQRY 739 Y R IE Y+ L L+ G + + + + G+ + +QRY Sbjct: 529 YFRYMKELIENGYVYIATPPLYLVKKGKESEYAWTEEQRLQAIQRLKGAGKEDSVHVQRY 588 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLW+TT+NP+ R+L +V I +A++ D +FS LMGDEV PRREFI++N+ + Sbjct: 589 KGLGEMNAEQLWDTTMNPEHRTLRQVTIDNAAECDRIFSMLMGDEVAPRREFIEKNARYA 648 Query: 800 ALD 802 +D Sbjct: 649 KID 651 >gi|297570618|ref|YP_003696392.1| DNA gyrase subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296930965|gb|ADH91773.1| DNA gyrase, B subunit [Arcanobacterium haemolyticum DSM 20595] Length = 682 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 276/648 (42%), Positives = 401/648 (61%), Gaps = 25/648 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q + Y+A +I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GYA IT Sbjct: 20 QGTEYNASNITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYASEIT 78 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL +G V D+GRGIP D+H EG++A +V+MT LHAGGKF SY VSGGLHGVG+ Sbjct: 79 VTLLDNGGVKVEDDGRGIPVDIHPTEGVAAVQVVMTVLHAGGKFGNGSYAVSGGLHGVGI 138 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ + ++R+G ++ +S+ NG+ PL G + TGT TF P++DIF Sbjct: 139 SVVNALSTRMDTEVRRDGYVWRISYENGVPVAPLEQ-GEPTDKTGTTQTFWPNADIFETV 197 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITMFYKGG 228 +F++DTL+ R +++FLN S++I+LID+R + ++T Y G Sbjct: 198 EFDFDTLRQRFHQMAFLNKSLKITLIDERETAVVEGDEVTGEDDATETKHTQVTYQYDNG 257 Query: 229 IEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 + +V++ + +P+ + PI + IS+++AM+W + Y E++ F N I + Sbjct: 258 LHDYVTHLIKTKKSEPVHEHPIYFEAEDKERVISVEVAMQWTNAYSESLHTFANTINTTE 317 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH G R+ALT I Y K+ ++ GDD REG T+V+S+K+ +P+F QTK Sbjct: 318 GGTHEEGFRTALTSIINKYARDKAILKEKDANLTGDDIREGLTAVISVKLGEPQFEGQTK 377 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL ++E R+ V+ L+ WL+ HP E K I++K + A R AAR+AR+ TRRK V Sbjct: 378 TKLGNTEARTFVQQTTYAQLTDWLDMHPSEGKEIIRKAMQAQTARLAARKAREATRRKSV 437 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ A++PGKL DC+ R P++ E+F+VEGDSAGGSA GR +QAI+P+RGKILNVE+AR Sbjct: 438 LESAAMPGKLKDCTSRKPEECEIFIVEGDSAGGSAVNGRDPNHQAIMPIRGKILNVEKAR 497 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 D+ LSS I +LITA GTG+G++ FDI+KLRYHKI+ M DADVDG HI TLLLT +R Sbjct: 498 LDRALSSDSIQSLITAFGTGVGEE-FDIDKLRYHKIVFMADADVDGQHIATLLLTLVYRY 556 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 M LI +G++Y+ PPLY + + + D + + L+ L I + Sbjct: 557 MRPLIEHGYIYLAMPPLYRLKWTNAEHEYVFSDKERDIKLEEGLAAGKRLPKAEGQGIQR 616 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFI-EQAVISGVFNCESDQEIN 631 ++D D + + I E A F+ +++ Sbjct: 617 YKGLGEMNDHELWDTTMNPETRTLKRVSIGEAAATDESFSVLMGEDVA 664 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 11/103 (10%) Query: 707 LICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRS 761 + + + I L+ + G++ G +QRYKGLGEMN +LW+TT+NP+TR+ Sbjct: 585 YVFSDKERDIK-----LEEGLAAGKRLPKAEGQGIQRYKGLGEMNDHELWDTTMNPETRT 639 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 L RV I +A+ D+ FS LMG++V RR FIQ N+ LDI Sbjct: 640 LKRVSIGEAAATDESFSVLMGEDVASRRSFIQRNAHDVRFLDI 682 >gi|158319065|ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs] gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs] Length = 636 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 301/587 (51%), Positives = 405/587 (68%), Gaps = 4/587 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D I+ Y A+ IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY D Sbjct: 2 DKIKTQEYSAEQIQVLEGLDPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALGGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S V DNGRGIP D+H + G S E ++T LHAGGKF YKVSGGLHG Sbjct: 61 TILVTIKEDDSIEVIDNGRGIPVDVHPQTGKSTLETVLTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS +L+ IK +G +Y F G + + G + GT + F P ++IF Sbjct: 121 VGVSVVNALSEYLEATIKLDGKVYWQRFERGNPVEDIKIIGETK-EKGTTILFKPDAEIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F Y+TL++RLREL+FLN ++I LIDKR + +E +Y GGI +V YL+++K Sbjct: 180 EETVFQYETLEYRLRELAFLNKGIKIVLIDKREGKEQEKVFYYDGGIMEYVKYLNKNKSV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + I + ++ +++AM++ D Y EN+ + NNI +GGTHLSG R++LTR + Sbjct: 240 LHEKIIHFEKEKETSVVEVAMQYTDTYTENIFSYANNINTHEGGTHLSGFRASLTRIVND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+ + +G+D REG T+V+S+K+ +P+F QTK KL +SE+R +VE+ V++ Sbjct: 300 YAKKAGFLKEKDANFLGEDIREGLTAVISVKLTEPQFEGQTKTKLGNSEMRGIVENSVSE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L A+LEE+P +AKIIV+K L A R+AA++AR+LTRRKG L+ +LPGKLADCSE+DP Sbjct: 360 ALEAFLEENPSDAKIIVEKSLRAQRAREAAKKARELTRRKGALESMALPGKLADCSEKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 SE+++VEG+SAGGSAKQGR R QAILPLRGKILNVE+AR DKML+S EI +ITA G Sbjct: 420 ALSEIYIVEGNSAGGSAKQGRDRSIQAILPLRGKILNVEKARLDKMLNSDEIRNMITAFG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 T IG++ FDI KLRYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++YI +PPLY Sbjct: 480 TSIGEE-FDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYIYIAQPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +GK +Y EE + +++ G ++ L Sbjct: 539 KLKKGKVEEYAYSEEEM-QVKLSEMGGNVDIQRYKGLGEMNPEQLWE 584 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 7/153 (4%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSLICNG 711 DI R + V ++G+ I + + R IE Y+ L + G Sbjct: 484 EEFDIEKLRYHKIVIMTDADVDGAHIRTLLLTFLFRFMKPLIERGYIYIAQPPLYKLKKG 543 Query: 712 DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + + S + +QRYKGLGEMN QLWETT+NP+TR+ L+V I DA+ Sbjct: 544 KVEEYAYSEEEMQVKLSEMGGNVDIQRYKGLGEMNPEQLWETTMNPETRTFLQVTIEDAA 603 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD++F+ LMGD+VEPRREFI++NS LDI Sbjct: 604 AADNIFTTLMGDKVEPRREFIEQNSKYVTNLDI 636 >gi|300871637|ref|YP_003786510.1| DNA gyrase subunit B [Brachyspira pilosicoli 95/1000] gi|300689338|gb|ADK32009.1| DNA Gyrase B subunit [Brachyspira pilosicoli 95/1000] Length = 637 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 282/590 (47%), Positives = 398/590 (67%), Gaps = 6/590 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +Y + +IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DN+IDE++ G+ Sbjct: 1 MA--TGEKTYSSKNIQVLEGLDPVRKRPGMYIGST-GSQGLHHLVYEVVDNSIDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ V D+GRGIP D+H + ISA EV+MT+LHAGGKF+ ++YKVSGGL Sbjct: 58 CKNIIVTIKKGNIIEVEDDGRGIPVDMHPKLKISALEVVMTKLHAGGKFDNETYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L + ++G +Y + G+ + P+ G + N TGT+VTF P + Sbjct: 118 HGVGVSVVNALSTELIAEVSKDGKLYRQVYHKGVPEEPVKEVGKS-NKTGTKVTFTPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF ++Y L +RLREL+FLN ++I+LIDKR +P +Y+GGIE F+++L+ +K Sbjct: 177 IFETTIYDYKILANRLRELAFLNRGIRITLIDKRESKPVSNEFYYEGGIEMFITHLNENK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 K L PI + + D +++AM++ D Y+EN+ + NNI +GGTHL G R+ALTR Sbjct: 237 KTLHDKPIYLHKTEDKTDVEVAMQYVDAYNENIFTYCNNINTTEGGTHLVGFRTALTRVY 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 T + +K KK+K + +G+D REG +V+S+K+P+P+F QTK KL ++EVR+V E V Sbjct: 297 TDFAKKLELDKKNKITFMGEDTREGLVAVVSVKIPNPQFEGQTKTKLGNTEVRAVTEKLV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GL+ + ++P K I++K++ A+ R+AARRARDL RRK L+ SLPGKLADCSE+ Sbjct: 357 VEGLNDYFSQNPKVIKAILEKIISAANAREAARRARDLARRKNALESDSLPGKLADCSEQ 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + K E++LVEGDSAGG+AK GR R QAILPLRGK+LNVE+AR DK++ + + +I A Sbjct: 417 EVDKCEVYLVEGDSAGGTAKGGRDRHFQAILPLRGKVLNVEKARLDKIIDTDSLKPIIAA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG G+G FDI+K+RY +IIIM DAD+DG+HIRTLLLTFFFR M LI G ++I PP Sbjct: 477 LGCGVGAS-FDISKIRYGRIIIMADADIDGSHIRTLLLTFFFRYMRPLIDLGHIFIAVPP 535 Query: 541 LYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I+ K Y +E + L + G ++ + L Sbjct: 536 LYKISFDKKNFVYAYTDEQRDKILEENKDRKYDIQRYKGLGEMNADQLWE 585 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%) Query: 724 DTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D I + + +QRYKGLGEMNA QLWETT+NP+TR + +V DA +AD LFS LMG Sbjct: 556 DKILEENKDRKYDIQRYKGLGEMNADQLWETTMNPETRLMYQVLTEDAEKADQLFSMLMG 615 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 DEV+PRREFI+ N+ LDI Sbjct: 616 DEVKPRREFIEANAKYVKNLDI 637 >gi|255530774|ref|YP_003091146.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366] gi|255343758|gb|ACU03084.1| DNA gyrase, B subunit [Pedobacter heparinus DSM 2366] Length = 652 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 290/603 (48%), Positives = 400/603 (66%), Gaps = 16/603 (2%) Query: 1 MSDNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSEEKDPKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GIKGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD I V + D S V DNGRGIPT ++ +E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 HADTIYVNILKDNSIRVEDNGRGIPTGINTKEQKSALEIVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ LK + REG I+ + G + G GT +TF P Sbjct: 120 LHGVGVSCVNALSTHLKAEVHREGKIWVQEYNIGKPLYEVKSIGDTDKL-GTIITFTPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVS 234 IF+ + YDTL RLRELSFLN ++++L D+R + E +GG++ FV Sbjct: 179 TIFTQTTEYRYDTLASRLRELSFLNKGIKLTLTDERETLENGEFLSELFHSEGGLKEFVQ 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD + L+ PI ++G ++ I ++LA+++ND Y ENV + NNI +GGTH++G R Sbjct: 239 FLDGTRPSLIPEPIYVEGIKNGIPVELALQYNDSYSENVHSYVNNINTHEGGTHIAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + +Y +KS K K + GDD REG T+V+S+K+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVISVKVQEPQFEGQTKTKLGNSEVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEE+P EA++IV KV+ A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDIAVGEALGIYLEEYPKEARMIVNKVILAATARAAARKAREMVQRKSVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS+ DP+K EL+LVEGDSAGG+AKQGR R QAILPL+GKILNVE+A K+ + EI Sbjct: 419 ADCSDSDPEKCELYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYENDEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG + D KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M +LI Sbjct: 479 KNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSHITTLILTFFFRYMKALIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKND 586 G++YI PPLY + +GK +Y +++ +D + + + E G ++ Sbjct: 539 AGYVYIAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGKEESVHIQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWD 601 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 11/192 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E E + ++ N + E+ +K+ + + +V + Sbjct: 461 ILNVEKAMEHKIYENDEIKNMFTALGVSIGTEEDDKALNLAKLRYHKIVIMTDADIDGSH 520 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGR 731 + F F I + + L + G + + + + G+ Sbjct: 521 ITTLILTFFFRYMKALIEAGYVY-IAAPPLYQVKKGKEFEYCWNDKQRDDAVQRLKGAGK 579 Query: 732 K-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 + + +QRYKGLGEMNA QLW+TTLNP TR+L++ I +A++ D FS LMGDEV PRR+ Sbjct: 580 EESVHIQRYKGLGEMNAEQLWDTTLNPATRTLMQATIENAAECDHTFSMLMGDEVAPRRD 639 Query: 791 FIQENSLPSALD 802 FI+ N+ + +D Sbjct: 640 FIERNAKYAKID 651 >gi|113954544|ref|YP_729329.1| DNA gyrase subunit B [Synechococcus sp. CC9311] gi|113881895|gb|ABI46853.1| DNA gyrase, B subunit [Synechococcus sp. CC9311] Length = 655 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 290/616 (47%), Positives = 409/616 (66%), Gaps = 15/616 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + ITV L DGS VSDNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCNEITVVLGEDGSAFVSDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV---VTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L TGT V F Sbjct: 120 LHGVGVSVVNALSEWVEVTVRRQGQVHRQRFERGAAIGSLASEPQPAEEKGLTGTSVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK------RSPEPREITMFYKGGI 229 P IF+V +F+Y TL RLREL++LN V+I D+ + +PRE FY+GGI Sbjct: 180 PDHQIFTVGIEFDYSTLSARLRELAYLNGGVRIVFRDERQAARDQEGKPREELYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K PL I + +D +S++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNAEKDPLHPEIIYVNSEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNTFAKKRGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTL+LTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586 + G++YI PPLY + RGK+ Y +E+ L+ L + + I+ F ++ K Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGEKANYNIQRFKGLGEMMPKQL 599 Query: 587 LRNFIDDALKIDKLIK 602 +D + ++ K ++ Sbjct: 600 WETTMDPSTRMMKRVE 615 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 11/179 (6%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFS 694 +K+ A + + D+ R R V ++G+ I + + + Sbjct: 477 AKIYKNTEIQALITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLILTFFYRYQ 536 Query: 695 NRIEENYL-----TILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNA 747 + E L + G L T+ G K ++QR+KGLGEM Sbjct: 537 KELVEGGYIYIACPPLYKVERGKNHTYCYNEQQLQKTLAGFGEKANYNIQRFKGLGEMMP 596 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 QLWETT++P TR + RV++ DA +AD +F+ LMGD+V PRREFI+ +S ++LDI Sbjct: 597 KQLWETTMDPSTRMMKRVEVQDALEADRIFTILMGDKVAPRREFIETHSADLDMASLDI 655 >gi|332685539|ref|YP_004455313.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311] gi|332369548|dbj|BAK20504.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311] Length = 650 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 292/651 (44%), Positives = 416/651 (63%), Gaps = 10/651 (1%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ +N Y+A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+ID Sbjct: 1 MTEEEKNMQQQRAEEYNASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+A I VT+ D S TV D+GRGIP D+ ++ G A E + T LHAGGKF Y Sbjct: 60 EALAGFATEIRVTIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L+ R+ R G IY + G + L V G + GT + Sbjct: 120 KVSGGLHGVGSSVVNALSTKLEARVYRNGKIYYQEYHRGNVVADLKVIGDT-DRHGTAIH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F+P +IF FN++ L R+REL+FLN ++IS+ D R PE +Y+GGI+++V Sbjct: 179 FIPDPEIFKETIEFNFEKLATRVRELAFLNRGLKISIEDLRGPETVLRDYYYEGGIKSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ +K L PI ++G + I+++++M++ DGYH N+L F NNI +GGTH +G + Sbjct: 239 GHLNANKDVLFDEPIYVEGEQQEITVEVSMQYTDGYHSNLLSFANNIHTYEGGTHEAGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y +K K++ ++ G+D REG T V+SIK P+P+F QTK KL +SEVR Sbjct: 299 TALTRVINDYAKKQKLMKENDENLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + ++ +L E+P K IV K L AS R AA+RAR++TRRKG L+I++LPGK Sbjct: 359 TVTDRLFSEHFGKFLMENPTIGKKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+ +K ELF+VEGDSAGGSAKQGR R QAILP+RGKILNVE+A DK+L+++E Sbjct: 419 LADCSSREAEKCELFIVEGDSAGGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G+D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M ++ G+ Sbjct: 479 IRSLFTAMGTGFGED-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PPLYG+ +GK++ YV+ + E+ L + + + ++ + Sbjct: 538 VYIAQPPLYGVKQGKNITYVQPGKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLW 597 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + I + + + + N Sbjct: 598 ETTMDPERRLMSRVSVDDAVAADQIFEMLMGDKVEPRRAFIEENAHYVKNL 648 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K L++T+ + S+QRYKGLGEM+ QLWETT++P+ R + RV + DA Sbjct: 561 KQAEEELSHLMETLPKSPK--ASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVA 618 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F LMGD+VEPRR FI+EN+ LDI Sbjct: 619 ADQIFEMLMGDKVEPRRAFIEENAHYVKNLDI 650 >gi|304383575|ref|ZP_07366034.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii DSM 16973] gi|304335099|gb|EFM01370.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii DSM 16973] Length = 657 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 281/659 (42%), Positives = 393/659 (59%), Gaps = 15/659 (2%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N + ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 1 MAENQTKENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V +N D S TV D+GRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 FCKNIEVIINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G GT F P + Sbjct: 120 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVVG-TTERRGTRQQFWPDA 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---REITMFYKGGIEAFVSYL 236 IF+ + +D + +R+REL++LN+ ++I+L D R E RE T + G++ FV Y+ Sbjct: 179 TIFTTTKYKWDIIANRMRELAYLNAGIKITLKDMRPDEEGKLREETFHAEDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N+ Y EN+ + NNI +GGTHL+G R AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAVMYNNDYSENIHSYVNNINTIEGGTHLTGFRMAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKTYADADPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + LS +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 SGAVQQAVGEALSNYLEEHPKEAKLICDKVVLAATARIAARKARESVQRKNVMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS RDPKK E+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ ++ K+ ++ Sbjct: 419 KLADCSNRDPKKCEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478 Query: 473 EIGTLITALGT-----GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEGDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I G LYI PPLY T ++ E +++ + Sbjct: 539 VIQEGHLYIATPPLYLCTYKNKVKEYCYTEQQRQAFLDKYGDGVEDGKSIHTQRYKGLGE 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 N + +A D E + A N A Sbjct: 599 MNPEQLWETTMDPNTRLLKQVNIENAAKADEIFSMLMGDDVEPRREFIEQNATYANIDA 657 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 58/71 (81%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P+TR L +V I +A++AD++FS LMGD+VEPRREF Sbjct: 586 KSIHTQRYKGLGEMNPEQLWETTMDPNTRLLKQVNIENAAKADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEQNATYANID 656 >gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4] gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4] Length = 638 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +N Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G D+I Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D S V D+G GIP + H + G S E ++T LHAGGKF+ +Y+ SGGLHGVG Sbjct: 61 KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS++L R+KR+G +YE F G L V TGT + F+P IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R RE++FLN V+I D+R + + Y+GGI++FV Y+++ KKPL Sbjct: 181 LNFDRNVLAKRFREMAFLNKGVKIEFADER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I+G +D +++AM++ + Y+E ++ FTNNI DGGTH+ G +SALTR + Y Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ ++ GDD REG T+V+S+K+ +P+F QTK KL +SE R+VV+S V + L Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P + I++K L + R AARRARDL R+K VLD +LPGKLADC D + Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+FLVEGDSAGGSAK GR + QAILPLRGKILNVE+A +++L+S+EI +ITA GTG Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M L+ G +YI +PPLYGI Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 +G + E + + + G ++ L + Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692 + L LN K+ + G+ + + ++ G + ++G+ I + + Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516 Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744 F + E L I G K+ L + + G + I +QRYKGLGE Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576 Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 MNA QLW+TT+NP+ R L++V+I D ++ D+ F LMGD VEPRREFI++N++ + + Sbjct: 577 MNAEQLWDTTMNPEHRVLIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636 Query: 802 D 802 D Sbjct: 637 D 637 >gi|227500982|ref|ZP_03931031.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] gi|227216755|gb|EEI82153.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] Length = 641 Score = 598 bits (1542), Expect = e-168, Method: Composition-based stats. Identities = 276/587 (47%), Positives = 400/587 (68%), Gaps = 5/587 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++Q+++YDA +I++L+GL+ V+ RP MYIG T + GLHH++YEV+DN++DE+L G D Sbjct: 7 NSMQDNNYDAGNIRVLEGLEPVRLRPGMYIGSTS-QRGLHHLVYEVVDNSVDEALAGRCD 65 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT++ D +V D+G GIP H S E ++T LHAGGKF+ +YKVSGGLHG Sbjct: 66 YIKVTIDKDNVVSVEDDGSGIPVKEHPTTHKSTLETVLTVLHAGGKFDDSAYKVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS +L +KR+G+IY+M F G + + V G +TGT++TF +IF Sbjct: 126 VGVSVVNALSEYLIAEVKRDGHIYKMEFARGEVTKDIEVIGDT-VETGTKITFKADGEIF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++ L++R RE++FLN V+I D+R E + + ++GGI FV+YL+R+K P Sbjct: 185 DTTIYDRTILENRFREMAFLNKGVEIQFEDER--EDFKTSFKFEGGISEFVAYLNRNKDP 242 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 +M+ G +++ ++ A ++ D Y EN+L + NNI +GG+HL+GLRS+LTR + Sbjct: 243 IMEMIPNFDGFQEDTEVEFAFQYTDAYSENILSYANNIQTPEGGSHLAGLRSSLTRTVND 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K ++ ++ G+D REG T+++S+K+ DP+F QTK KL +SEVR V++F+++ Sbjct: 303 YARKYNFLKDNEDNLQGEDIREGITAIISVKITDPQFEGQTKSKLGNSEVRGAVDTFISE 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LEE+P AK I+ K L + R+AAR+ARDLTR++ +LD A+LPGKLADC D Sbjct: 363 HLANFLEENPKPAKAIIDKALASRRAREAARKARDLTRKRSILDSATLPGKLADCQSTDI 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++E+F+VEG+SAGGSAK GR QAILPLRGKI+NVE+A D++L+S+EI +ITA G Sbjct: 423 GENEIFIVEGNSAGGSAKGGRDNRIQAILPLRGKIMNVEKAHLDRVLNSEEIKNMITAFG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGIG++ FD+ KLRY KIIIMTDADVDGAHIRTLLLTFF+R M LI G +Y+ PPLY Sbjct: 483 TGIGKE-FDLEKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMKDLIDKGHVYVALPPLY 541 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I+ GK +YV ++ + + + G ++ L Sbjct: 542 RISVGKKERYVYSDDERDKVIKELGVDNYKINRYKGLGEMNAEQLWE 588 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V + ++ N + K + ++ V + Sbjct: 457 IMNVEKAHLDRVLNSEEIKNMITAFGTGIGKEFDLEKLRYGKIIIMTDADVDGAHIRTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I + + + + + I +G + RYK Sbjct: 517 LTFFYRYMKDLIDKGHVYVALPPLYRISVGKKERYVYSDDERDKVIKELGVDNYKINRYK 576 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREFIQENSLP 798 GLGEMNA QLWETT++PD R LLRV + D DD F+ LMG++VEPRR FIQEN+ Sbjct: 577 GLGEMNAEQLWETTMDPDRRVLLRV-VEDMESTTTDDTFALLMGEKVEPRRNFIQENAKY 635 Query: 799 S-ALDI 803 +D+ Sbjct: 636 VTDIDV 641 >gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310] gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310] Length = 657 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 278/650 (42%), Positives = 395/650 (60%), Gaps = 16/650 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENQNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDIEVTINDDESITVQDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G N GT F P Sbjct: 120 LHGVGVSCVNALSSHMTSQVFRDGKIYQQEYERGKALYPVKVIGET-NLRGTRQQFWPDG 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 IF+ F +D + R+REL+FLN+ ++I+L + R K G++ FV Y+ Sbjct: 179 SIFTTTHFQWDIIARRMRELAFLNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHL+G R+AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKTYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L+ +LEEHP EAK I +KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 SGAVQQAVGEALTNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNVMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY + K+ +Y E+ + ++ + EE ++ + Sbjct: 539 IIEEGHLYIATPPLYKCTYKNKASEYCYTEQQRQAFIDKYAQGEEDSKSIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + I + + + + Sbjct: 599 MNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEQ 648 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 43/75 (57%), Positives = 56/75 (74%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEP Sbjct: 582 EEDSKSIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEIFSMLMGDDVEP 641 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 642 RREFIEQNATYANID 656 >gi|258510025|ref|YP_003183459.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476751|gb|ACV57070.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 637 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 291/637 (45%), Positives = 406/637 (63%), Gaps = 11/637 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D I YD I++L+GL AV+KRP MYIG T GLHH+++E++DNA+DE+L G Sbjct: 1 MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSA-KGLHHLVWEIVDNAVDEALAGR 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNG G P +H + G A E ++T LHAGGKF K YKVSGGL Sbjct: 60 CTRIVVQVHPDNSVTVIDNGAGFPVGIHPKTGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS W+++ + R+G IY + G L V G + TGT+V+F P + Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F+ +TL +RLREL+FLN+ ++I D+R R + Y GG+ FV +L++ Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGVAEFVRWLNQS 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L PI + +D++++++A+++NDGY V F NNI +GGTH +G +SALTR Sbjct: 238 KDVLFDDPIYVSAVKDDVAVEIALQYNDGYAATVYSFANNINTAEGGTHEAGFKSALTRV 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K + S+ GDD REG T+V+S+K+P+P+F QTK KL +SEVR +VE+ Sbjct: 298 INDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSEVRGIVETL 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +LEE+P A+ IV+K + A+ R+AARRAR+LTR K +D+ SLPGKL DCS Sbjct: 358 FAERMQMFLEENPSIARKIVEKCILAARAREAARRARELTRSK-KMDVTSLPGKLTDCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP++SELFLVEGDSAGGSAK GR + QAILPLRGKI+NVE+AR DK+L+++EI +IT Sbjct: 417 KDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANEEIRAIIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FDI+K RYHKI+IMTDAD DG+HIR LLLT F+R M LI G++YI +P Sbjct: 477 ACGTGIG-DDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGYIYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK ++Y + LE L G ++ + L +D Sbjct: 536 PLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWET-----TMDP 590 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + ++ +I + + + +A Sbjct: 591 ESRTLLRVTMEDAMDADMIFSILMGDKVEPRRDFIAE 627 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I G ++ + L+ I GR+G+ +QRYKGLGEMNA QLWETT++P++R+ Sbjct: 535 PPLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWETTMDPESRT 594 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV + DA AD +FS LMGD+VEPRR+FI E++ LD+ Sbjct: 595 LLRVTMEDAMDADMIFSILMGDKVEPRRDFIAEHARFVRNLDV 637 >gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159] gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159] Length = 636 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 293/590 (49%), Positives = 403/590 (68%), Gaps = 7/590 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+++ + YDA +IQ+L+GL+AV++RP MYIG TD GLHH+IYE++DN++DE+L GY Sbjct: 1 MTNST--TRYDASAIQVLEGLEAVRRRPGMYIGSTD-IRGLHHLIYEIVDNSVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ DGS V D+GRGIP D+H + G SA EVIMT LHAGGKF YKVSGGL Sbjct: 58 CDRIEVTIHRDGSVRVWDDGRGIPVDIHPKVGKSALEVIMTTLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ ++R+G IY + G+ P+ G +D GTE FLP Sbjct: 118 HGVGASVVNALSEWLEVTVRRDGKIYHQRYERGVPVTPVETIGETTPDDHGTETVFLPDR 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF D+ D L R RE+++L S + I +D+R+ +GGI +FV +L+R Sbjct: 178 LIFRSLDYQSDVLLQRFREVAYLTSGLTIHFVDERTDLDMTFYF--EGGIVSFVRHLNRT 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L P ++ ++ +++A+++ DGY E+ F NNI DGGTH++G ++ALTR Sbjct: 236 KEVLQPQPFYVKREQNGCLVEVAIQYTDGYAESTHAFANNINTIDGGTHVTGFKAALTRA 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K++ ++ G+D REG T+++S+ +P+P+F QTK KL ++EV +V+S Sbjct: 296 INEYARRHGLLKENDPNLSGEDVREGLTAIISVMLPEPQFEGQTKTKLGNAEVAGIVQSI 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + +++LEEHP A+ I++K L A+ R+AAR+AR+L +RKG LD SLPGKLADC+E Sbjct: 356 VYESFTSYLEEHPAIARRIIEKCLTAARAREAARKARELVQRKGALDTFSLPGKLADCTE 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP K+EL++VEGDSAGGSAKQGR R QA+LPLRGKILNVE+AR D+ML ++EI LIT Sbjct: 416 RDPAKAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLHNEEIRALIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG D +D +KLRYH++I+MTDADVDGAHIRTLLLTFFFR + LI +G LYI +P Sbjct: 476 ALGTGIG-DQYDRSKLRYHRVILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHLYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + GK + YV +E + L G ++ L Sbjct: 535 PLYRLQSGKEVHYVYSDEERDAILNRGDGKTWDIQRYKGLGEMNPEQLWE 584 Score = 170 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 14/202 (6%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + + E + + +L + + ++ + + + + Sbjct: 447 LPLRGKILNVEKARLDRMLHNEEIRALITALGTGIGDQYDRSKLRYHR-----------V 495 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F F I + + L + + Sbjct: 496 ILMTDADVDGAHIRTLLLTFFFRYLEGLIIDGHLYIAQPPLYRLQSGKEVHYVYSDEER- 554 Query: 724 DTIFSIG-RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 D I + G K +QRYKGLGEMN QLWETT++P R+LL+V I DA +AD+ F+ LMG Sbjct: 555 DAILNRGDGKTWDIQRYKGLGEMNPEQLWETTMDPARRTLLQVTIEDAVRADETFNMLMG 614 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 V PR+ FIQ ++ LDI Sbjct: 615 SAVPPRKRFIQAHAREVRNLDI 636 >gi|308234055|ref|ZP_07664792.1| DNA gyrase, B subunit [Atopobium vaginae DSM 15829] Length = 648 Score = 598 bits (1541), Expect = e-168, Method: Composition-based stats. Identities = 282/553 (50%), Positives = 380/553 (68%), Gaps = 14/553 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + SSY + I++L+GLD V+KRP MYIG T SGLHH+++E++DN++DE++ GY Sbjct: 1 MTKEV--SSYGGNEIKVLEGLDPVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V DNGRGIP ++H ++ I EV++T LHAGGKF+ +YKVSGGL Sbjct: 58 CTSINVIVHPDNSISVEDNGRGIPVEMHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L R+ R+G I+EM F G + + G + + TGT +TF P Sbjct: 118 HGVGVSVVNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSSH-TGTTITFWPDDT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +N+DTL RL+E +FLN ++ ISL D+R PR+ Y GGI FV YL+ K Sbjct: 177 IFETTTYNFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEK 236 Query: 241 K--PLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 P + PI I+GS ++++++WN Y E+V+ F N+I +GG HL G Sbjct: 237 TILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEG 296 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALT+ I Y K+ + ++ GDD REG +++S+K+PDP+F QTK KL SS Sbjct: 297 FRSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSY 356 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++ V GL+ +LEEHP +AK I KK A+ R AA+RAR + RRKG+L+ ASLP Sbjct: 357 MRTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLP 416 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RD + +ELF+VEGDSAGGSAK R R QA+LPLRGKILNVER + D+ LSS Sbjct: 417 GKLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 476 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + I +LITA+GTG+G++ F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M L+ Sbjct: 477 ESITSLITAIGTGVGKE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 535 Query: 532 GFLYIIKPPLYGI 544 G++Y+ +PPLY I Sbjct: 536 GYIYVAQPPLYQI 548 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 155/470 (32%), Gaps = 41/470 (8%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD----PKKS 425 + + + + R+ T RK + + P + Sbjct: 184 NFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEKTILPGLN 243 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 + +EG SA R + + F + + E G + + + Sbjct: 244 DPIYIEGSSA--PDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGFRSAL 301 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP 539 + D R HK++ +A++ G IR L ++P G ++ Sbjct: 302 TKTINDY--ARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYMRT 359 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--------IELFCDSKGVISKNDLRNFI 591 I +Y+++ + + ++ KG++ L + Sbjct: 360 LTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPGKL 419 Query: 592 DDALKIDKLIKDF----------YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKL 638 D D + + + QAV+ + N E Q+ + + Sbjct: 420 ADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSESI 479 Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 + + I K ++ +V V + F + + + I Sbjct: 480 TSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGYIY 539 Query: 699 ENYLTILSLICNGDKIKI---TGPCSLLDT-IFSIGRKGISMQRYKGLGEMNASQLWETT 754 + + G K T L+ F K S+QRYKGLGEM+ QLW TT Sbjct: 540 VAQPPLYQIKAKGKKYGKYLYTDEELALEAKQFEDSSK-YSVQRYKGLGEMDPEQLWSTT 598 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 + P R +LRV + DA +A+ + LMG +VE R++FIQ ++ LDI Sbjct: 599 MEPKNRIMLRVTVDDAREAERAVANLMGTQVEKRKDFIQTHAKDVRFLDI 648 >gi|149278877|ref|ZP_01885012.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase) [Pedobacter sp. BAL39] gi|149230496|gb|EDM35880.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase) [Pedobacter sp. BAL39] Length = 652 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 290/603 (48%), Positives = 402/603 (66%), Gaps = 16/603 (2%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ N S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSEENDPKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GIKGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +AD I V + D S V DNGRGIPT ++K+E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 HADTIYVNILEDNSIRVEDNGRGIPTGINKKENKSALEIVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ LK + REG I+ + G + + G + GT VTF P Sbjct: 120 LHGVGVSCVNALSTHLKAEVHREGQIWMQEYNIGKPLYDVKLVGET-DKRGTIVTFSPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+ + YDTL RLRELSFLN ++++L D+R + +GG++ FV Sbjct: 179 TIFTQTTEYRYDTLAARLRELSFLNKGIKLTLTDERETDADGNFITELFHSEGGLKEFVQ 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +LD + L+ PI ++G ++ I ++LA+++ND Y ENV + NNI +GGTH++G R Sbjct: 239 FLDGGRPSLIAEPIYVEGIKNGIPVELALQYNDSYAENVHSYVNNINTHEGGTHIAGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + +Y +KS K K + GDD REG T+V+S+K+ +P+F QTK KL +SEV Sbjct: 299 GLTRTLKAYADKSGLLKNVKFEITGDDFREGLTAVVSVKVQEPQFEGQTKTKLGNSEVMG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L+ +LEE+P EAK+IV KV+ A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDVAVGEALNNYLEENPREAKLIVNKVILAATARAAARKAREMVQRKSVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS+ DP+K E++LVEGDSAGG+AKQGR R QAILPL+GKILNVE+A K+ + EI Sbjct: 419 ADCSDSDPEKCEIYLVEGDSAGGTAKQGRDRNFQAILPLKGKILNVEKAMEHKIYENDEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG D KLRYHK++IMTDAD+DG+HI TL+LTFFFR M +LI Sbjct: 479 KNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSHITTLILTFFFRYMKALIE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKND 586 G++YI PPLY + +GK +Y +++ + + + + E G ++ Sbjct: 539 AGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKEESVHIQRYKGLGEMNAEQ 598 Query: 587 LRN 589 L + Sbjct: 599 LWD 601 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 9/191 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + N E E + ++ N + + +K+ + + +V + Sbjct: 461 ILNVEKAMEHKIYENDEIKNMFTALGVSIGTPEDDKALNLTKLRYHKVVIMTDADIDGSH 520 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRK 732 + F F I + + + + + + + G++ Sbjct: 521 ITTLILTFFFRYMKALIEAGYVYIAAPPLYQVKKGKEHEYCWNDQQRDAAVQRLKGAGKE 580 Query: 733 -GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 + +QRYKGLGEMNA QLW+TTLNP TR+LL+ I +A++ D FS LMGDEV PRR+F Sbjct: 581 ESVHIQRYKGLGEMNAEQLWDTTLNPQTRTLLQATIENAAECDHTFSMLMGDEVGPRRDF 640 Query: 792 IQENSLPSALD 802 I+ N+ + +D Sbjct: 641 IERNAKYAKID 651 >gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328] gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328] Length = 638 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +N Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G D+I Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D S V D+G GIP + H + G S E ++T LHAGGKF+ +Y+ SGGLHGVG Sbjct: 61 KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS++L R+KR+G +YE F G L V TGT + F+P IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R RE++FLN V+I D+R + + Y+GGI++FV Y+++ KKPL Sbjct: 181 LNFDKNVLAKRFREMAFLNKGVKIEFSDER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I+G +D +++AM++ + Y+E ++ FTNNI DGGTH+ G +SALTR + Y Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ ++ GDD REG T+V+S+K+ +P+F QTK KL +SE R+VV+S V + L Sbjct: 299 RNKNILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P + I++K L + R AARRARDL R+K VLD +LPGKLADC D + Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+FLVEGDSAGGSAK GR + QAILPLRGKILNVE+A +++L+S+EI +ITA GTG Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M L+ G +YI +PPLYGI Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 +G + E + + + G ++ L + Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692 + L LN K+ + G+ + + ++ G + ++G+ I + + Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516 Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744 F + E L I G K+ L + + G + I +QRYKGLGE Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576 Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 MNA QLW+TT+NP+ R L++V+I D ++ D+ F LMGD VEPRREFI++N++ + + Sbjct: 577 MNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636 Query: 802 D 802 D Sbjct: 637 D 637 >gi|78183717|ref|YP_376151.1| DNA gyrase subunit B [Synechococcus sp. CC9902] gi|78168011|gb|ABB25108.1| DNA gyrase subunit B [Synechococcus sp. CC9902] Length = 655 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 293/661 (44%), Positives = 409/661 (61%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD + + Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSDASKVQNEYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D ITV L DGS +V+DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDRITVILGADGSASVTDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL--VVTGSAGN-DTGTEVTFL 176 LHGVGVSVVNALS W+++ ++R+G ++ F G L A +TGT V FL Sbjct: 120 LHGVGVSVVNALSEWVQVTVRRQGQVHRQRFERGAAIGTLLSESQPEAEQGETGTTVCFL 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P + IF+ F+Y TL RLREL++LN VQI D+R +P E FY+GGI Sbjct: 180 PDTQIFTGGIVFDYATLSARLRELAYLNGGVQIVFRDERESSLSDAGDPHEEIYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y+++ K L I + +D + ++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNKAKDALHPDIIYVNSEKDGVQVEAALQWCADAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNAFAKKLGKRKEADSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V++ V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDNLVGESLSQFLEFNPSVISLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDSKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI LITALG GI + FD LRYH+++IMTDADVDGAHIRTL+LTFF+R L Sbjct: 480 YKNTEIQALITALGLGIKGEEFDQKSLRYHRVVIMTDADVDGAHIRTLILTFFYRYKREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L + + G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESDLQKTLKGFGENAKYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPSTRMMKRIEIEDALEADRIFTILMGDKV-APRREFIETHSKELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 6/206 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + I + + + + L L + K E+ S+ Sbjct: 452 QGRDRRFQAILPLRGKILNIEKTDDSKIYKNTEIQALITALG-LGIKGEEFDQKSLRYHR 510 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 +++ V + F + K + + I + + + Sbjct: 511 VVI-MTDADVDGAHIRTLILTFFYRYKRELVEGGYIYIACPPLYKVERGKNHTYCYNESD 569 Query: 722 LLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L T+ G ++QR+KGLGEM QLWETT++P TR + R++I DA +AD +F+ L Sbjct: 570 LQKTLKGFGENAKYTIQRFKGLGEMMPKQLWETTMDPSTRMMKRIEIEDALEADRIFTIL 629 Query: 781 MGDEVEPRREFIQENSLP---SALDI 803 MGD+V PRREFI+ +S +ALDI Sbjct: 630 MGDKVAPRREFIETHSKELDMAALDI 655 >gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010] gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010] Length = 656 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 278/607 (45%), Positives = 386/607 (63%), Gaps = 20/607 (3%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAEIQEHENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDIEVTINEDNSITVEDNGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS + ++ REG IY+ + G P+ V G TGT F P Sbjct: 120 LHGVGVSCVNALSKHMMSQVFREGKIYQQEYEKGKPLYPVKVVGETE-KTGTRQQFWPDG 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSY 235 IF+ F +D + R+REL++LN+ ++I+LID R + + R K G++ +V Y Sbjct: 179 TIFTTTVFQWDVVARRMRELAYLNAGIKITLIDLRPDPETGKTRTEIFHAKDGLKEYVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + + I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFNDVIYLKSEKQGVPIEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+S+K+ +P+F QTK KL +SE Sbjct: 299 LTRTLKTYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + LSA+LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALSAYLEEHPSEAKMICNKVVLAATARIAARKARESVQRKNVMTGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G + +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEEDSDFEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE----IELFCDSKGVI 582 +I G L+I PPLY T K +Y E+ + ++ EE G + Sbjct: 539 KVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDKYGAGEEGKTIHTQRYKGLGEM 598 Query: 583 SKNDLRN 589 + L Sbjct: 599 NPEQLWE 605 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 G K I QRYKGLGEMN QLWETT++P TR L +V I +A+ AD++FS LMGD+VEP Sbjct: 582 EEG-KTIHTQRYKGLGEMNPEQLWETTMDPKTRLLKQVTIENAADADEVFSMLMGDDVEP 640 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 641 RREFIEQNATYANID 655 >gi|257054095|ref|YP_003131927.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017] gi|256583967|gb|ACU95100.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017] Length = 654 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 277/597 (46%), Positives = 380/597 (63%), Gaps = 19/597 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +NS Y A SI +L+GL+AV+KRP MYIG T G GLHH+I EV+DN++DE++ GY Sbjct: 1 MA--AKNSEYSASSITVLEGLEAVRKRPGMYIGST-GVRGLHHLIQEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V D+GRGIP + H G E+++T+LHAGGKF+ SY VSGGL Sbjct: 58 ASRVEVTLLADGGVRVVDDGRGIPVEPHPVHGKPTVEIVLTQLHAGGKFDSDSYAVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L++ I R+G I+ + N + LV G + +GT VTF + Sbjct: 118 HGVGVSVVNALSSALEVEIHRDGRIWAQRYENSVP-GELVDKGPT-DRSGTSVTFWADPE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------MFYKGG 228 IF ++N +T+ RL+E++FLN + + L D+R + +Y GG Sbjct: 176 IFETTEYNAETVARRLQEMAFLNKGLTMILRDERVTDEEGEDATGERAQLKERTYYYPGG 235 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 +E FV Y++ ++ + S I + D + +++AM+WNDGY +V F N I +GGTH Sbjct: 236 LEDFVKYINASREAIHPSVISFEQKGDGLEVEVAMQWNDGYTPSVYTFANTINTHEGGTH 295 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 G R+ALTR + +Y K+ ++ GDD REG +++SIK+ +P+F QTK KL Sbjct: 296 EEGFRAALTRVVNAYARDKKLLKEKDANLTGDDVREGLAAIVSIKLTEPQFEGQTKTKLG 355 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 +SE RS V++ N+ L+ W E +P EAK+I+ K + ++ R AAR+ARDL RRKG +DI Sbjct: 356 NSEARSFVQTACNEWLADWFERNPTEAKLIINKAVSSAQARLAARKARDLVRRKGAMDIG 415 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 LPGKL DC DP++ EL++VEGDSAGGSAK+GR QAILP+RGKI+NVE+AR DK+ Sbjct: 416 GLPGKLKDCRSNDPEECELYIVEGDSAGGSAKEGRDSRFQAILPIRGKIINVEKARIDKV 475 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 L +QE+ +LITALGTGI D FDI+KLRYHKI+IM DADVDG HIRTLLLT FR M L Sbjct: 476 LKNQEVQSLITALGTGI-HDDFDISKLRYHKIVIMADADVDGQHIRTLLLTLLFRFMRPL 534 Query: 529 IHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 + G +Y+ +PPLY I + QY + + L + + D Sbjct: 535 VEQGHVYLAQPPLYKIKWPRMEPQYAYSDRERDGLLRAGAEAGRKLPKDDGIQRYKG 591 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA +LWETT++P R LL+V + DA+QAD+LFS LMG++VE RR FI N Sbjct: 586 IQRYKGLGEMNAEELWETTMDPSNRVLLQVTLDDAAQADELFSVLMGEDVEARRSFITRN 645 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 646 AKGVQFLDV 654 >gi|255535639|ref|YP_003096010.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10] gi|255341835|gb|ACU07948.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10] Length = 644 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 278/595 (46%), Positives = 397/595 (66%), Gaps = 12/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y A SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L G+ D I Sbjct: 1 MSQKEYTASSIQALEGMEHVRLRPSMYIGDV-GTRGLHHLVYEVVDNSIDEALAGHCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +V ++ S +V DNGRGIP D+H++E SA EV+MT++ AGGKF++ SYKVSGGLHGVG Sbjct: 60 SVVIHEGESISVKDNGRGIPVDMHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS+ L + R+G +Y+ + G + + G+ G + GTEV F P + IF Sbjct: 120 VSCVNALSTSLVATVNRDGKVYQQKYSEGKALDKVHEIGTTG-ERGTEVFFQPDATIFQE 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHK 240 +NYDTL RLRELSFLN + I+L D+R GG+ FV ++D ++ Sbjct: 179 TVYNYDTLAARLRELSFLNKGITITLTDERRPNEDGTFVSEVFHSDGGLREFVEFIDGNR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +M + I ++G ++I +++AMR+N Y+EN+ + NNI +GGTHL+G R ALTR + Sbjct: 239 ESIMSNVIYMEGDNNDIPVEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 + ++ K+K V GDD REG T+V+S+K+ +P+F QTK KL +SEV V+ V Sbjct: 299 KKFADELGIPAKEKVEVTGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAKIIV+KV+ A+ R AA++AR+L +RK + + LPGKL+DCS + Sbjct: 359 GEMLTNFLEENPNEAKIIVQKVVLAAKARQAAKKARELVQRKSPMGGSGLPGKLSDCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SELFLVEGDSAGG+AKQGR R QAILPLRGKILNVE++ K+ ++EI + TA Sbjct: 419 DPAISELFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIKNIYTA 478 Query: 481 LGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LG +G + +I+KLRYHK++IMTDAD+DG+HI TL+LTFFFR M LI NG+++I Sbjct: 479 LGVSVGTEEDSKALNISKLRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENGYIFI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 +PPLY + +G+ Y +E+ E++ + + + G ++ L Sbjct: 539 AQPPLYLLKKGQKKIYAYNEKEREEFTLELAPDGKGVEVQRYKGLGEMNPEQLWE 593 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 8/208 (3%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E++++ V++ E + I +L + E+ K+ + S Sbjct: 443 RHFQAILPLRGKILNVEKSMLHKVYDNEEIKNIYTALGVSVG------TEEDSKALNISK 496 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 +V + + F F + I + I + L KI Sbjct: 497 LRYHKVVIMTDADIDGSHISTLILTFFFRYMKELIENGYIFIAQPPLYLLKKGQKKIYAY 556 Query: 718 GPCSLLDTIFSIG--RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + + KG+ +QRYKGLGEMN QLWETTLNP+ R L +V I + AD+ Sbjct: 557 NEKEREEFTLELAPDGKGVEVQRYKGLGEMNPEQLWETTLNPEHRILKQVTIESLADADN 616 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803 +FS LMGDEV PRREFI++N++ + +D+ Sbjct: 617 VFSMLMGDEVPPRREFIEKNAVYAKIDV 644 >gi|282880626|ref|ZP_06289332.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1] gi|281305521|gb|EFA97575.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1] Length = 657 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 279/659 (42%), Positives = 381/659 (57%), Gaps = 15/659 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAEKQNTENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDIEVTINEDESITVQDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G + GT F P Sbjct: 120 LHGVGVSCVNALSSHMTSQVFRDGKIYQQEYEKGKALYPVKVVGET-DKRGTRQQFWPDG 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 IF+ F +D + R+REL+FLN+ ++I+L + R K G++ FV Y+ Sbjct: 179 SIFTTTHFQWDIIARRMRELAFLNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHL+G R+AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAAL 298 Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKTYADSEPTISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + LS +LEEHP EAK I +KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 359 SGAVQQAVGEALSNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNFMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 +I G LYI PPLY + E I++ + E + Sbjct: 539 VIEEGHLYIATPPLYKCSYKNKASEYCYTEQQRQAFIDKYANGEEDSKSIHTQRYKGLGE 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 N A D E K A N A Sbjct: 599 MNPEQLWETTMNPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEKNATYANIDA 657 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 44/75 (58%), Positives = 56/75 (74%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 K I QRYKGLGEMN QLWETT+NP TR L +V I +A+ AD++FS LMGD+VEP Sbjct: 582 EEDSKSIHTQRYKGLGEMNPEQLWETTMNPKTRLLKQVTIENAADADEIFSMLMGDDVEP 641 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 642 RREFIEKNATYANID 656 >gi|218291098|ref|ZP_03495121.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238983|gb|EED06190.1| DNA gyrase, B subunit [Alicyclobacillus acidocaldarius LAA1] Length = 637 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 291/637 (45%), Positives = 406/637 (63%), Gaps = 11/637 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D I YD I++L+GL AV+KRP MYIG T GLHH+++E++DNA+DE+L G Sbjct: 1 MADRIPEQVYDESQIEVLEGLQAVRKRPGMYIGSTSA-KGLHHLVWEIVDNAVDEALAGR 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV DNG G P +H + G A E ++T LHAGGKF K YKVSGGL Sbjct: 60 CTRIVVQVHPDNSVTVIDNGAGFPVGIHPKTGRPAVETVLTTLHAGGKFGGKGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS W+++ + R+G IY + G L V G + TGT+V+F P + Sbjct: 120 HGVGASVVNALSEWMRVEVHRDGRIYVQEYERGTPLYDLKVIG-TTDKTGTKVSFKPDPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F+ +TL +RLREL+FLN+ ++I D+R R + Y GG+ FV +L++ Sbjct: 179 IFTETTVFSAETLMNRLRELAFLNAGLEIVFEDEREGGKRAV-FKYDGGVAEFVRWLNQS 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L PI + +D++++++A+++NDGY+ V F NNI +GGTH +G +SALTR Sbjct: 238 KDVLFDDPIYVSAVKDDVAVEIALQYNDGYNATVYSFANNINTAEGGTHEAGFKSALTRV 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K + S+ GDD REG T+V+S+K+P+P+F QTK KL +SEVR +VE+ Sbjct: 298 INDYARRYGFLKSNDNSMTGDDVREGLTAVVSVKVPEPQFEGQTKTKLGNSEVRGIVETL 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + +LEE+P A+ IV K + A+ R+AARRAR+LTR K +D+ SLPGKL DCS Sbjct: 358 FAERMQMFLEENPSIARKIVDKCILAARAREAARRARELTRSK-KMDVTSLPGKLTDCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP++SELFLVEGDSAGGSAK GR + QAILPLRGKI+NVE+AR DK+L+++EI +IT Sbjct: 417 KDPERSELFLVEGDSAGGSAKMGRDPQTQAILPLRGKIINVEKARLDKVLANEEIRAIIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FDI+K RYHKI+IMTDAD DG+HIR LLLT F+R M LI G++YI +P Sbjct: 477 ACGTGIG-DDFDISKARYHKIVIMTDADHDGSHIRILLLTLFYRFMRPLIDAGYIYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I +GK ++Y + LE L G ++ + L +D Sbjct: 536 PLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWET-----TMDP 590 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + ++ +I + + + +A Sbjct: 591 ESRTLLRVTMEDAMDADMIFSILMGDKVEPRRDFIAE 627 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 2/103 (1%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L I G ++ + L+ I GR+G+ +QRYKGLGEMNA QLWETT++P++R+ Sbjct: 535 PPLYKIEKGKVVRYAYSDAQLEQILQEMGREGVRLQRYKGLGEMNADQLWETTMDPESRT 594 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV + DA AD +FS LMGD+VEPRR+FI E++ LD+ Sbjct: 595 LLRVTMEDAMDADMIFSILMGDKVEPRRDFIAEHARFVRNLDV 637 >gi|332685540|ref|YP_004455314.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311] gi|332369549|dbj|BAK20505.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311] Length = 643 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 290/643 (45%), Positives = 412/643 (64%), Gaps = 4/643 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Y+A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 2 QQQRAEEYNASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFAT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVSGGLHG Sbjct: 61 EIRVTIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L+ R+ R G IY + G + L V G + GT + F+P +IF Sbjct: 121 VGSSVVNALSTKLEARVYRNGKIYYQEYHRGNVVADLKVIGDT-DRHGTAIHFIPDPEIF 179 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FN++ L R+REL+FLN ++IS+ D R PE +Y+GGI+++V +L+ +K Sbjct: 180 KETIEFNFEKLATRVRELAFLNRGLKISIEDLRGPETVLRDYYYEGGIKSYVGHLNANKD 239 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G + I+++++M++ DGYH N+L F NNI +GGTH +G ++ALTR I Sbjct: 240 VLFDEPIYVEGEQQEITVEVSMQYTDGYHSNLLSFANNIHTYEGGTHEAGFKTALTRVIN 299 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y +K K++ ++ G+D REG T V+SIK P+P+F QTK KL +SEVR+V + + Sbjct: 300 DYAKKQKLMKENDENLTGEDVREGLTCVISIKHPEPQFEGQTKTKLGNSEVRTVTDRLFS 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P K IV K L AS R AA+RAR++TRRKG L+I++LPGKLADCS R+ Sbjct: 360 EHFGKFLMENPTIGKKIVDKGLLASKARLAAKRAREVTRRKGNLEISNLPGKLADCSSRE 419 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 +K ELF+VEGDSAGGSAKQGR R QAILP+RGKILNVE+A DK+L+++EI +L TA+ Sbjct: 420 AEKCELFIVEGDSAGGSAKQGRDRMFQAILPIRGKILNVEKASMDKILANEEIRSLFTAM 479 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G+D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M ++ G++YI +PPL Sbjct: 480 GTGFGED-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPL 538 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 YG+ +GK++ YV+ + E+ L + + + ++ + +D Sbjct: 539 YGVKQGKNITYVQPGKQAEEELSHLMETLPKSPKASVQRYKGLGEMDDHQLWETTMDPER 598 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + I + + + + N Sbjct: 599 RLMSRVSVDDAVAADQIFEMLMGDKVEPRRAFIEENAHYVKNL 641 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 K L++T+ + S+QRYKGLGEM+ QLWETT++P+ R + RV + DA Sbjct: 554 KQAEEELSHLMETLPKSPK--ASVQRYKGLGEMDDHQLWETTMDPERRLMSRVSVDDAVA 611 Query: 773 ADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 AD +F LMGD+VEPRR FI+EN+ LDI Sbjct: 612 ADQIFEMLMGDKVEPRRAFIEENAHYVKNLDI 643 >gi|303233456|ref|ZP_07320124.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4] gi|302480464|gb|EFL43556.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4] Length = 648 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 281/601 (46%), Positives = 385/601 (64%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ ++SY + I++L+GLD V+KRP MYIG T GLHH+++E++DN++DE++ G+ Sbjct: 1 MT--TPSNSYTGNEIKVLEGLDPVRKRPGMYIGTTSAA-GLHHLVWEIVDNSVDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V DNGRGIP ++H ++ I EV++T LHAGGKF+ +YKVSGGL Sbjct: 58 CTSIEVTVHPDNSISVKDNGRGIPVEIHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L ++R+G I++M F G + + G + TGT +TF P Sbjct: 118 HGVGVSVVNALSKRLIATVERDGGIFQMEFERGKVTKKMQQIG-TSSKTGTTITFWPDDL 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +N++TLQ+RL+E +FLN ++ I + D+R PR Y GGI FV +L+ K Sbjct: 177 IFETTVYNFETLQNRLQETAFLNKNLHIRITDEREETPRVEEYCYSGGIIDFVKFLNEEK 236 Query: 241 KPLM--QSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 PL +PI I+G +++A++WN Y E V+ F N+I +GG HL G Sbjct: 237 TPLPGLTTPIYIEGQSDESAPLTQKGEVEVAIQWNTSYSEYVMSFANDIYTDEGGMHLEG 296 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALT+ + Y K+ ++ GDD REG +V+S+K+PDP+F QTK KL SS Sbjct: 297 FRTALTKTVNDYARGHNLLKEKDSNLTGDDIREGLCAVISVKLPDPQFEGQTKAKLGSSY 356 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +RS+ V GL+ + EEHP +AK I KK A+ R AA++AR + RRKG+L+ ASLP Sbjct: 357 MRSLTNKIVAAGLTEYFEEHPNQAKEIFKKAAQAAKGRLAAQKARQVARRKGLLESASLP 416 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RD + +ELF+VEGDSAGGSAK R R QA+LPLRGKILNVER + D+ LSS Sbjct: 417 GKLADCSVRDAEMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 476 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + I +LITA+GTG+G + F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M L+ Sbjct: 477 ETITSLITAIGTGVGNE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 535 Query: 532 GFLYIIKPPLYGITRGKSLQY---VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 GF+Y+ +PPLY I DEE + S+ G + L Sbjct: 536 GFIYVAQPPLYQIKAKGKKYGKYLYTDEELAIEAREYDDPSKYTVQRYKGLGEMDPEQLW 595 Query: 589 N 589 + Sbjct: 596 S 596 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QRYKGLGEM+ QLW TT+ P R +LRV I DA A+ + LMG +VE R++FIQ Sbjct: 578 YTVQRYKGLGEMDPEQLWSTTMEPKNRIMLRVTIEDARDAERAVANLMGSQVEKRKDFIQ 637 Query: 794 ENSLPSA-LDI 803 ++ LDI Sbjct: 638 THAKDVRFLDI 648 >gi|118587497|ref|ZP_01544922.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163] gi|71466856|emb|CAH41002.1| DNA gyrase subunit B [Oenococcus oeni] gi|118432147|gb|EAV38888.1| DNA gyrase, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 652 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 401/639 (62%), Gaps = 9/639 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N+SY SIQIL+GL+AV+KRP MYIG T SGLHH+++E++DN IDE+L G+A +T+ Sbjct: 15 NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D S T++D+GRG+P ++ + G A E + T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 74 TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VVNALS + +R+ R+ IY M F G + + + GT V F P DIF Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y TL R+REL+FLN +++S+ DKR + + Y+GGI +V +L+++K+PL Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ ++G + I +++A+++ D E ++ FTNNI +GGTH +G + ALTR I YV Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYV 313 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K K + G+D REG T+++SIK PDP+F QTK KL +++ + V + Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQAVNHQFSTIF 373 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + ++ E+P A+ I K L AS R AA++ARDLTR+K L+I++L GKLAD + RDP+ Sbjct: 374 NRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543 G++ FDI+K YHK+IIMTDADVDGAHIRTLLLT FFR M LI G++YI +PPLYG Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552 Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 I Y+ +E L+ Y S + G + L + D + + Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 P + + E +E A + + Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649 Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 102/305 (33%), Gaps = 16/305 (5%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHN--GFLYIIKPPLYGITRGKSLQYVKDEESLED 561 TDA H + + F + P I + + L K + Sbjct: 359 TDAQQAVNHQFSTIFNRFMMENPETARAIANKGLIASKARVAAKKARDLTRKKSGLEISA 418 Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621 + + + ++ + +E+A + V Sbjct: 419 LAGKLADNTSRDPEISELFIVEGDSAGGSAKQGRS-RLTQAILPIRGKILNVEKATLDKV 477 Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681 E + + ++ + + K I++ L + Sbjct: 478 LANEEIRSLFTAMGTGFGEEFDISKAHYHKV---------IIMTDADVDGAHIRTLLLTL 528 Query: 682 IFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISMQRY 739 F + I + L +++ + ++ + L K +QRY Sbjct: 529 FFRYMRPLIDAGYIYIAQPPLYGVAIGNSDQRVYLDSDEELDQYTATLPASPK-PRIQRY 587 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLW+TT++P R LLRV + D F LMGD VEPRREFI++N+ Sbjct: 588 KGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFV 647 Query: 800 A-LDI 803 LD+ Sbjct: 648 EDLDV 652 >gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359] gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359] Length = 636 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 280/589 (47%), Positives = 372/589 (63%), Gaps = 13/589 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+SI++LKGL+ V+ RP MYIG T G+ GLHH++YEV+DN++DESL GY D I VT Sbjct: 2 EKYSAESIKVLKGLEPVRMRPGMYIGST-GKRGLHHLVYEVVDNSVDESLAGYCDWIKVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS V DNGRGIP D+H EEG SA EV+ T LHAGGKF++ SYK+SGGLHGVGVSV Sbjct: 61 LHEDGSVEVEDNGRGIPVDVHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL++R+ R+G IY + G + V G + GT V F P IFS +F Sbjct: 121 VNALSEWLEVRVYRDGKIYRQRYERGKPVTLVEVIGET-DKHGTVVRFKPDPLIFSETEF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D L+HRLRE++FL ++I D+ + E T + GG++ FV YL+R KK L Sbjct: 180 DPDILEHRLREIAFLVPGLKIEFEDRINNEK--KTFKFDGGLKEFVKYLNRGKKVLHDVI 237 Query: 248 IRIQGSRDNIS-------IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + + +++A ++ D Y E +L F N I DGGTH++ ++ LTR + Sbjct: 238 YLKRTEKVKVKDKEDEVIVEIAFQYTDSYSEEILSFANTIKTVDGGTHVTAFKTTLTRLM 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K S GDD REG T+V+S+ + +P F QTK KL + EV+ V + Sbjct: 298 NEYGRKHNFLKNGD-SFQGDDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVNRAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + P + I+ K++ R+AARRAR++ RRK VL +LPGKLADCS Sbjct: 357 REELKKIFDASPDLVRTILSKIMSTKQAREAARRAREMVRRKNVLQSTTLPGKLADCSST 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D + +ELF+VEGDSAGGSAKQ R R QA+LP+RGKILNVE++ D++L +++I +I A Sbjct: 417 DRENTELFIVEGDSAGGSAKQARDRVFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG D FDINKLRY KIIIMTDAD+DGAHIRTLLLT F+R M LI +G +YI PP Sbjct: 477 VGTGIG-DDFDINKLRYGKIIIMTDADIDGAHIRTLLLTLFYRYMKPLIEDGRIYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY I GK YV + L +Y + G ++ L Sbjct: 536 LYRIRVGKEDFYVYSDAELMEYRKMFEGKKMEIQRYKGLGEMNPEQLWE 584 Score = 170 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++++ + + + + ++ + + Sbjct: 453 ILNVEKSSLDRLLKNEQISDIIVAVGTGIGDDFDINKLRYGKIIIMTDADIDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT-IFSIGRKGISMQRY 739 + I RI + + + + L++ G+K + +QRY Sbjct: 513 LTLFYRYMKPLIEDGRIYIALPPLYRIRVGKEDFYVYSDAELMEYRKMFEGKK-MEIQRY 571 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT+NP+TR ++RV I DA +AD LF LMG++ RREFI+ ++L Sbjct: 572 KGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHALKV 631 Query: 800 -ALDI 803 LDI Sbjct: 632 KELDI 636 >gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3] gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3] Length = 638 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 280/587 (47%), Positives = 385/587 (65%), Gaps = 6/587 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +N Y AD I +L+GL+ V+ RP MYIG TD E GLHH++YEV+DN+IDE+L G D+I Sbjct: 2 KKNREYTADQITVLEGLEPVRVRPGMYIGSTD-EKGLHHLVYEVVDNSIDEALAGVCDLI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D S V D+G GIP + H + G S E ++T LHAGGKF+ +Y+ SGGLHGVG Sbjct: 61 KVTIKKDNSIIVEDDGSGIPVETHPKTGKSTLETVLTVLHAGGKFSNDAYQYSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS++L R+KR+G +YE F G L V TGT + F+P IF Sbjct: 121 VSCVNALSTYLIARVKRDGKMYEQRFEKGKTVTGLTVVKENVRGTGTTIEFMPDDTIFET 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + L R RE++FLN V+I D+R + + Y+GGI++FV Y+++ KKPL Sbjct: 181 LNFDRNVLAKRFREMAFLNKGVKIEFADER--DGYKELFHYEGGIKSFVEYINKSKKPLD 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I+G +D +++AM++ + Y+E ++ FTNNI DGGTH+ G +SALTR + Y Sbjct: 239 HEVMYIEGEKDTTKVEIAMQYTESYNETIVSFTNNIKTVDGGTHVVGFKSALTRALNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ ++ GDD REG T+V+S+K+ +P+F QTK KL +SE R+VV+S V + L Sbjct: 299 RNKSILKEKDDNLSGDDVREGITAVVSVKLNNPQFEGQTKGKLGNSEARTVVDSVVYEHL 358 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 S + EE+P + I++K L + R AARRARDL R+K VLD +LPGKLADC D + Sbjct: 359 SFYFEENPKIVRTIIQKALASQKARLAARRARDLVRKKSVLDNTTLPGKLADCQSSDIEY 418 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+FLVEGDSAGGSAK GR + QAILPLRGKILNVE+A +++L+S+EI +ITA GTG Sbjct: 419 NEIFLVEGDSAGGSAKGGRDNKFQAILPLRGKILNVEKAHLERVLNSEEIKAMITAFGTG 478 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI+KLRY KI+IMTDADVDGAHIRTLLLTF +R M L+ G +YI +PPLYGI Sbjct: 479 IGKN-FDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYRFMKPLVEKGHVYIAQPPLYGI 537 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 +G + E + + + G ++ L + Sbjct: 538 IKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGEMNAEQLWD 584 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%) Query: 636 SKLANRLNFIAEKSEKSWHGSINNSDILVKRIARG---VQEQFVLEGSSIFSFGSKYKRI 692 + L LN K+ + G+ + + ++ G + ++G+ I + + Sbjct: 457 AHLERVLNSEEIKAMITAFGTGIGKNFDISKLRYGKIVIMTDADVDGAHIRTLLLTFLYR 516 Query: 693 FSNRIEE-----NYLTILSLICNGDKI--KITGPCSLLDTIFSIGRK-GISMQRYKGLGE 744 F + E L I G K+ L + + G + I +QRYKGLGE Sbjct: 517 FMKPLVEKGHVYIAQPPLYGIIKGVKVMEYCYTEQELEEALEKYGERSNIKVQRYKGLGE 576 Query: 745 MNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 MNA QLW+TT+NP+ R L++V+I D ++ D+ F LMGD VEPRREFI++N++ + + Sbjct: 577 MNAEQLWDTTMNPEHRILIKVEIDGEDENELDNTFDVLMGDNVEPRREFIEQNAVYAQNI 636 Query: 802 D 802 D Sbjct: 637 D 637 >gi|257388769|ref|YP_003178542.1| DNA gyrase subunit beta [Halomicrobium mukohataei DSM 12286] gi|257171076|gb|ACV48835.1| DNA gyrase, B subunit [Halomicrobium mukohataei DSM 12286] Length = 641 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 287/596 (48%), Positives = 395/596 (66%), Gaps = 14/596 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q+ Y A+ IQ+L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MS---QDRDYGAEQIQVLEGLQAVQKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +VSD+GRGIP D H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDEITVTIHEDDSVSVSDDGRGIPVDTHEKHDRPALEVIMTVLHAGGKFDSKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178 HGVGVSVVNALS WL++ +KR+G +++ F +G ++ L +TGT++ F P Sbjct: 117 HGVGVSVVNALSKWLEVEVKRDGAVWKQRFDHGEPEDELERVRDMEPDEETGTQIRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF DF Y TL RLREL+FLNS V+ISL+D+R + T Y+GGI+ FV YL+ Sbjct: 177 DEIFEATDFVYSTLASRLRELAFLNSGVEISLVDERDGDS--ETFVYEGGIKEFVQYLNE 234 Query: 239 HKKPLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 K+PL + I + + +++AM+ ++ F NNI ++GG+H++G ++ Sbjct: 235 TKEPLHRDVIYFEDEEQIEDGPVQVEIAMQGTAELQGSIHAFANNINTREGGSHMTGFKT 294 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + Y + ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR Sbjct: 295 ALTRTVNDYATSNGLLNDLDDTLSGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRG 354 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +VES ++DGL + EE+P A+ IV K ++A+ R AA++A +LTRRK L+ +LPGKL Sbjct: 355 IVESAMHDGLGTFFEENPDTAEAIVGKAVEAAKARKAAKKAEELTRRKSALESTALPGKL 414 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 +DC RDP +ELF+VEGDSAGGSAKQGR+ E QAILP+RGKILNVER R D++L + I Sbjct: 415 SDCQTRDPDDAELFVVEGDSAGGSAKQGRNPEFQAILPIRGKILNVERHRLDRILENDSI 474 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +ITALGTGIG D FD+ +RY +II+MTDADVDGAHIRTLLLT F+R M L+ G++ Sbjct: 475 RNVITALGTGIG-DEFDVEDIRYKRIIMMTDADVDGAHIRTLLLTLFYRHMKPLLEAGYV 533 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 Y +PPLY + E + + + + G ++ L + Sbjct: 534 YAAQPPLYRVRYNGETYDAMTEAERDRLVEEKCGGDPDQVQRFKGLGEMNPQQLWD 589 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT++PD R L ++ I DA+ AD +FS LMGD VEPR+EFI+E Sbjct: 572 QVQRFKGLGEMNPQQLWDTTMDPDQRILKQITIEDAAAADKMFSVLMGDAVEPRKEFIKE 631 Query: 795 NSLPSA-LDI 803 +S + +DI Sbjct: 632 HSPEADWVDI 641 >gi|116329807|ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116123496|gb|ABJ74767.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 641 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQK--ETSYSASQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ + V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G IY + GI +P+ + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236 IF+ DF +D L R REL+FLN + + + D+R + GGI +FV ++ Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+AL Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 TR + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ + Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +++ ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLA Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY Sbjct: 476 ILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY I GK+ Y ++ E+ L N + + G ++ L Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + F+E + + Q + A N Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 RL+ I E S I + + +I R + + + S F Sbjct: 462 KARLDKILSSEEIRILVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520 Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743 R IE+ YL L LI +G + + ++G + + +QRYKGLG Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 EMN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|261878836|ref|ZP_06005263.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis DSM 17361] gi|270334578|gb|EFA45364.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella bergensis DSM 17361] Length = 657 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 276/653 (42%), Positives = 397/653 (60%), Gaps = 16/653 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N++ +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MAENLKREENYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VT+N D SCTV DNGRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCDHIEVTINEDNSCTVEDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ R+G Y+ + G P+ V G+ + GT F P Sbjct: 120 LHGVGVSCVNALSARMLSQVFRDGKAYQQEYEKGKPLYPVKVIGNT-DKRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 IF+ + F +D + R+REL++LN+ ++I+L + R+ K G++ FV Y+ Sbjct: 179 TIFTTRTFQWDIVARRMRELAYLNAGIKITLTDLRPNEDGKIRQEVFHAKDGLKEFVRYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + + I++A+ +N Y EN+ + NNI +GGTH++G R AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQGVPIEVAIMYNTDYSENLHSYVNNINTIEGGTHVTGFRQAL 298 Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRVLKNYADNDPQIAKQIEKAKVEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V V + L+ +LEEHP EAK I +KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 359 TGAVNQAVGEALTNYLEEHPTEAKQICEKVVLAATARVAARKARESVQRKSVMTGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 419 KLADCSNKDPKLCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVDGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 538 Query: 528 LIHNGFLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G LYI PPLY +GK+ +Y +E Y + EE ++ + Sbjct: 539 IIEEGHLYIATPPLYKCTYKGKNSEYCYNEGQRLAYFQKYANGEEDSKNIHTQRYKGLGE 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 + +D + + E + + + + + A Sbjct: 599 MNPDQLWETTMDPANRLLKQVTIENAAEADETFSMLMGDDVEPRREFIEANAA 651 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 54/75 (72%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 K I QRYKGLGEMN QLWETT++P R L +V I +A++AD+ FS LMGD+VEP Sbjct: 582 EEDSKNIHTQRYKGLGEMNPDQLWETTMDPANRLLKQVTIENAAEADETFSMLMGDDVEP 641 Query: 788 RREFIQENSLPSALD 802 RREFI+ N+ + +D Sbjct: 642 RREFIEANAAYANID 656 >gi|328943452|ref|ZP_08240917.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae DSM 15829] gi|327491421|gb|EGF23195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae DSM 15829] Length = 650 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 282/553 (50%), Positives = 379/553 (68%), Gaps = 12/553 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + SSY + I++L+GLD V+KRP MYIG T SGLHH+++E++DN++DE++ GY Sbjct: 1 MFVTKEVSSYGGNEIKVLEGLDPVRKRPGMYIGTTSA-SGLHHLVWEIVDNSVDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V DNGRGIP ++H ++ I EV++T LHAGGKF+ +YKVSGGL Sbjct: 60 CTSINVIVHPDNSISVEDNGRGIPVEMHPQKKIPTLEVVLTILHAGGKFDNAAYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L R+ R+G I+EM F G + + G + + TGT +TF P Sbjct: 120 HGVGVSVVNALSKRLIARVSRDGGIFEMEFKRGKVTKKMTRVGDSSH-TGTTITFWPDDT 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +N+DTL RL+E +FLN ++ ISL D+R PR+ Y GGI FV YL+ K Sbjct: 179 IFETTTYNFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEK 238 Query: 241 K--PLMQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 P + PI I+GS ++++++WN Y E+V+ F N+I +GG HL G Sbjct: 239 TILPGLNDPIYIEGSSAPDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALT+ I Y K+ + ++ GDD REG +++S+K+PDP+F QTK KL SS Sbjct: 299 FRSALTKTINDYARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSY 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++ V GL+ +LEEHP +AK I KK A+ R AA+RAR + RRKG+L+ ASLP Sbjct: 359 MRTLTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RD + +ELF+VEGDSAGGSAK R R QA+LPLRGKILNVER + D+ LSS Sbjct: 419 GKLADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSS 478 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 + I +LITA+GTG+G++ F+I K RYHKI+IMTDADVDGAHIR LLLTFF+R M L+ Sbjct: 479 ESITSLITAIGTGVGKE-FNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDA 537 Query: 532 GFLYIIKPPLYGI 544 G++Y+ +PPLY I Sbjct: 538 GYIYVAQPPLYQI 550 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 155/470 (32%), Gaps = 41/470 (8%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD----PKKS 425 + + + + R+ T RK + + P + Sbjct: 186 NFDTLHDRLQETAFLNKNLHISLTDEREETPRKEEFCYSGGIVDFVKYLNEEKTILPGLN 245 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 + +EG SA R + + F + + E G + + + Sbjct: 246 DPIYIEGSSA--PDTPLNQRGEVEVSIQWNTTYSEHVMSFANDIYTDEGGMHLEGFRSAL 303 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP 539 + D R HK++ +A++ G IR L ++P G ++ Sbjct: 304 TKTINDY--ARSHKLLKEKEANLTGDDIREGLCAIISVKLPDPQFEGQTKAKLGSSYMRT 361 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--------IELFCDSKGVISKNDLRNFI 591 I +Y+++ + + ++ KG++ L + Sbjct: 362 LTNKIVGAGLTEYLEEHPNQAKEIFKKAFQAAKGRLAAQRARQVARRKGLLESASLPGKL 421 Query: 592 DDALKIDKLIKDF----------YPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKL 638 D D + + + QAV+ + N E Q+ + + Sbjct: 422 ADCSVRDAQMTELFIVEGDSAGGSAKMARDRSIQAVLPLRGKILNVERVQQDRALSSESI 481 Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 + + I K ++ +V V + F + + + I Sbjct: 482 TSLITAIGTGVGKEFNIEKARYHKIVIMTDADVDGAHIRILLLTFFYRYMKPLVDAGYIY 541 Query: 699 ENYLTILSLICNGDKIKI---TGPCSLLDT-IFSIGRKGISMQRYKGLGEMNASQLWETT 754 + + G K T L+ F K S+QRYKGLGEM+ QLW TT Sbjct: 542 VAQPPLYQIKAKGKKYGKYLYTDEELALEAKQFEDSSK-YSVQRYKGLGEMDPEQLWSTT 600 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 + P R +LRV + DA +A+ + LMG +VE R++FIQ ++ LDI Sbjct: 601 MEPKNRIMLRVTVDDAREAERAVANLMGTQVEKRKDFIQTHAKDVRFLDI 650 >gi|312142414|ref|YP_003993860.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 640 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 285/587 (48%), Positives = 398/587 (67%), Gaps = 4/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y+A+ IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE++ GY I Sbjct: 4 KERSNYEAEHIQVLEGLEAVRKRPGMYIGSTSTE-GLHHLVYEVVDNSIDEAMAGYCTEI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + V DNGRGIP + H + A EV+MT LHAGGKF + YKVSGGLHGVG Sbjct: 63 IVEIQPGNIIKVKDNGRGIPVENHPKIDKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVG 122 Query: 125 VSVVNALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182 +SVVNAL+ W+++ I ++G +Y+ + G+ + L GS +D TGT + F IF Sbjct: 123 ISVVNALTEWMEVEIAWKDGKVYKQKYERGVPQHELRAIGSCDSDCTGTTIEFKADPQIF 182 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 D+ Y L RL+EL+FLN ++I +ID R E +E Y GG+ +FV YL++ KKP Sbjct: 183 EEIDYEYRNLAQRLKELAFLNKGLKIKIIDSRVDETKEDEYQYDGGLVSFVKYLNQSKKP 242 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L PI ++ + S+++A++++ GY+ ++ F NNI K+GGTHLSG +SA+TR Sbjct: 243 LYPDPIYLETEGEEGSLEVAIQYHQGYNSSIFSFANNINTKEGGTHLSGFKSAITRTFND 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K + G D REG T+++S+K+ DP+F QTK KL +SE+R V+S V+ Sbjct: 303 YARKKNILKDSDDNFKGQDIREGMTAIISVKLADPQFEGQTKTKLGNSEMRGFVDSAVSS 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +LEE+P AK+IV K L A+ R AAR+ARDLTRRK L +LPGKLADC++R Sbjct: 363 FLKTFLEENPKIAKVIVDKALSAARARKAARKARDLTRRKSALTSTALPGKLADCAKRQA 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K +E+++VEGDSAGGSAKQGR+RE QAILPL+GKILNVE++R +K+L++ EI LITA+G Sbjct: 423 KDTEVYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG+ + FDIN LRY +IIIMTDAD+DGAHIRTLLLTFF+R M L+ NG +YI +PPLY Sbjct: 483 TGV-AEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLY 541 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +G+ +YV ++++L++ L G ++ L + Sbjct: 542 KVKKGRKEEYVYNDKALKELLDEIGRDRVSMQRYKGLGEMNPGQLWD 588 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 69/179 (38%), Positives = 93/179 (51%), Gaps = 14/179 (7%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687 +RLN I E G DI R R + ++G+ I + F Sbjct: 462 KSRLNKILNNDEIRALITAIGTGVAEEFDINNLRYERIIIMTDADIDGAHIRTLLLTFFY 521 Query: 688 KYKR-IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 +Y R + N L + G K + + +L + + IGR +SMQRYKGLGEM Sbjct: 522 RYMRPLLENGNIYIAQPPLYKVKKGRKEEYVYNDKALKELLDEIGRDRVSMQRYKGLGEM 581 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 N QLW+TT++PD R LL+V I DA AD+ FS LMGD+VEPRR+FIQEN+ LD+ Sbjct: 582 NPGQLWDTTMDPDNRILLQVNIEDAILADETFSILMGDKVEPRRKFIQENAAQVKNLDV 640 >gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16] gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16] Length = 641 Score = 596 bits (1538), Expect = e-168, Method: Composition-based stats. Identities = 288/592 (48%), Positives = 401/592 (67%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N QN +YD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN+IDE++ G+ Sbjct: 1 MLVNEQNQTYDESQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNSIDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+ + TV DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGL Sbjct: 60 CDEIKVTIEEGNALTVEDNGRGIPVGIQEKMGRPAVEVIMTTLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L + + +G I+ S+ G+ D L V G + TGT +TF P + Sbjct: 120 HGVGASVVNALSTHLTVNVHLDGKIHSQSYSRGVPDADLTVIGET-DKTGTTITFQPDPE 178 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F+Y+TL R+REL+FLN + I + DKR+ + ++ T Y+GGI +FV +L+R Sbjct: 179 IFRETVEFDYETLAARIRELAFLNKGLTIKIEDKRTEDGKKATYHYEGGISSFVKHLNRS 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + PI ++ +D IS+++A+++NDG+ ++ F NNI +GGTH SG ++ LTR Sbjct: 239 KETLHEEPIYVESEKDGISVEVAVQYNDGFTSSIYSFANNINTHEGGTHESGFKTGLTRV 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K++ ++ G+D REG T+++S+K+P+P+F QTK KL +SE R++ +S Sbjct: 299 INDYARKNGLFKENDPNLSGEDVREGLTAIISVKIPEPQFEGQTKTKLGNSEARTITDSL 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ + +L E+P A+ IV K L AS R+AA++AR+LTRRK L+++SLPGKL DC+ Sbjct: 359 FSESFARFLSENPGVARKIVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLTDCTS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SELF+VEGDSAGGSAK GR QAILPLRGKILNVE+AR DK+L++ EI +IT Sbjct: 419 KDASISELFIVEGDSAGGSAKGGRDPHFQAILPLRGKILNVEKARLDKILANNEIRMIIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTL+LTFF+R M L+ NG++YI +P Sbjct: 479 AIGTGIG-DEFDISKARYHKIVIMTDADVDGAHIRTLILTFFYRYMRELLENGYVYIAQP 537 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY I + D E S+ G ++ L Sbjct: 538 PLYKIEQGKNNVTYVYSDRELDAHLATVADRSKVSVQRYKGLGEMNAGQLWE 589 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + I + S +V V + Sbjct: 456 ILNVEKARLDKILANNEIRMIITAIGTGIGDEFDISKARYHKIVIMTDADVDGAHIRTLI 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIG-RKGISMQR 738 F + + + + + + + + + + L + ++ R +S+QR Sbjct: 516 LTFFYRYMRELLENGYVYIAQPPLYKIEQGKNNVTYVYSDRELDAHLATVADRSKVSVQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLWETT++P R++L+V + DA +AD++F LMGD VEPRR+FIQEN+ Sbjct: 576 YKGLGEMNAGQLWETTMDPQVRNMLQVTLADAIKADEIFEILMGDRVEPRRDFIQENAHY 635 Query: 799 S-ALDI 803 LD+ Sbjct: 636 VKNLDV 641 >gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1] gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1] Length = 640 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 299/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + + YD IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQREQIVYDESQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 FCTEINVIVEEDNSITVIDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L++ + R+GNI+ + G+ + L V G + TGT + F P Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGNIHYQKYKRGVPCSDLQVVGET-DRTGTTIHFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ ++YDTL HRLREL+FLN ++I+L D+R R Y+GGI ++V +L+R Sbjct: 179 EIFTETTEYDYDTLAHRLRELAFLNKGIRITLEDRRGENRRNEYY-YEGGISSYVKHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L + PI I+G +D I +++A+++NDGY N+ F NNI +GGTH G ++ALTR Sbjct: 238 TKETLHEEPIYIEGEKDGIQVEIALQYNDGYTSNIYSFANNIHTHEGGTHELGFKTALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K+ K ++ G+D REG T+++S+K P P+F QTK KL +S+ R+ ES Sbjct: 298 IINDYGRKNNMFKDQDANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATES 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + +L E+P AK IV+K + AS R AA+RAR+LTRRK L+++SLPGKLADCS Sbjct: 358 IFAEQFEKFLLENPSVAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP EL++VEGDSAGGSAKQGR R QAILPLRGKI+NVE++R DK+LS+ E+ +I Sbjct: 418 SRDPAICELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M +I G++YI + Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREVIEQGYVYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +GK ++Y + LE+ L + + G ++ L Sbjct: 537 PPLYKIQQGKRIEYAYSDRQLEEILTRLPEQPKPVIQRYKGLGEMNPEQLWE 588 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 39/333 (11%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEES 558 DA++ G +R L + P+ G + I + +++ + S Sbjct: 313 DANLTGEDVREGLTAIISVKHPAPQFEGQTKTKLGNSDARTATESIFAEQFEKFLLENPS 372 Query: 559 LEDYLINQSL--------SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 + ++ + + ++ K + + L + D D I + Y Sbjct: 373 VAKKIVEKGILASRARLAAKRARELTRRKNALEVSSLPGKLADCSSRDPAICELYVVEGD 432 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDILV 664 + A + ++ + + + +RL+ I +E G + DI Sbjct: 433 SAGGSAKQGRDRHFQAILPLRGKIINVEKSRLDKILSNNEVRAIITALGTGIGEDFDITK 492 Query: 665 KRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENY----LTILSLICNGDKIK 715 R + + ++G+ I + F +Y R IE+ Y L I G +I+ Sbjct: 493 ARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREV---IEQGYVYIAQPPLYKIQQGKRIE 549 Query: 716 ITG----PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 +L + + +QRYKGLGEMN QLWETT+NP+TR+LL+V + DA Sbjct: 550 YAYSDRQLEEILTRLPEQPK--PVIQRYKGLGEMNPEQLWETTMNPETRTLLKVSLQDAM 607 Query: 772 QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +AD+ F LMGD+VEPRR+FI+EN+ LDI Sbjct: 608 EADETFEILMGDKVEPRRQFIEENAKYVKNLDI 640 >gi|323343849|ref|ZP_08084076.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis ATCC 33269] gi|323095668|gb|EFZ38242.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis ATCC 33269] Length = 672 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 276/650 (42%), Positives = 395/650 (60%), Gaps = 16/650 (2%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+D ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 16 MADIQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 74 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 75 YCTDIEVTINEDESITVQDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 134 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G + GT F P Sbjct: 135 LHGVGVSCVNALSSHMLSQVFRDGKIYQQEYEKGKPLYPVKVMG-TTDKRGTRQQFWPDK 193 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSYL 236 IF+ + +D + R+REL++LN+ ++I+L D +PR K G++ FV Y+ Sbjct: 194 TIFTTIHYQWDIIARRMRELAYLNAGIKITLTDLRANEEGKPRVEVFHAKDGLKEFVRYV 253 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N Y EN+ + NNI +GGTHLSG R+AL Sbjct: 254 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLSGFRTAL 313 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 314 TRVLKAYADNDPVISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 373 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L+ +LEEHP EAK I +KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 374 SGAVQQAVGEALTNYLEEHPAEAKKICEKVVLAATARIAARKARESVQRKNFMSGGGLPG 433 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ ++ Sbjct: 434 KLADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAE 493 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 494 SVMNIIQSIGVRFGVEGEDDREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPK 553 Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I +G LYI PPLY + + +Y E+ + + + +E ++ + Sbjct: 554 VIEDGHLYIANPPLYKCSYKNKVSEYCYTEQQRQAFFDKYANGDEDAKSIHTQRYKGLGE 613 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + +D + + + E I + + + + Sbjct: 614 MNPDQLWETTMDPKSRLLKQVNIENAAEADEIFSMLMGDDVEPRREFIEQ 663 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 57/71 (80%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P +R L +V I +A++AD++FS LMGD+VEPRREF Sbjct: 601 KSIHTQRYKGLGEMNPDQLWETTMDPKSRLLKQVNIENAAEADEIFSMLMGDDVEPRREF 660 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 661 IEQNATYANID 671 >gi|169830224|ref|YP_001716206.1| DNA gyrase subunit B [Candidatus Desulforudis audaxviator MP104C] gi|169637068|gb|ACA58574.1| DNA gyrase, B subunit [Candidatus Desulforudis audaxviator MP104C] Length = 635 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 302/592 (51%), Positives = 406/592 (68%), Gaps = 12/592 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N S Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH+I+EV+DN+IDE+L G+ Sbjct: 1 MDKN--GSGYRAEDIQVLEGLEAVRKRPGMYIGST-GPKGLHHLIFEVVDNSIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TVSDNGRGIP D+H + G A EV++TRLHAGGKF YK+SGGL Sbjct: 58 CDYIEVVIHADNSVTVSDNGRGIPVDIHPQVGRPALEVVLTRLHAGGKFGGTQYKISGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +++ +KREG Y F G+ L + A ++TGT VTF+P D Sbjct: 118 HGVGVSVVNALSRRMEVEVKREGYRYRQEFERGLATGELELLDEA-DETGTRVTFIPDPD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YD + RLRELSFLN+ V + L D+R+ R+ Y GGI FV +L+ HK Sbjct: 177 IFEEVEFQYDVVAKRLRELSFLNAGVTLVLRDERTG--RDKVYQYAGGIRDFVRHLNLHK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L PI ++ ++ + +++A+++ + E + + N I DGGTH +G +SALTR Sbjct: 235 EVLPADPIYVEDHKNGVWVEVAVQYVVNSDRELIFSYANTIHTVDGGTHEAGFKSALTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K + S+ G+D REG T+V+++K+P+P+F QTK KL +SEVR +V+ Sbjct: 295 INDYARK--YNLVKNDSLSGEDIREGLTAVINVKVPEPQFEGQTKTKLGNSEVRGLVDWV 352 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+ L+A+LEEHP EA+ IV++ + AS R+AARRAR+LT+RK +L+ A+LPGKLADCS Sbjct: 353 VSQRLAAYLEEHPTEARQIVQRAVVASRAREAARRARELTKRKSLLESATLPGKLADCSR 412 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+ SEL+LVEGDSAGGSAKQGR RE QAILPLRGKILN E+AR DK+L ++EI LIT Sbjct: 413 RDPQHSELYLVEGDSAGGSAKQGRDREFQAILPLRGKILNAEKARRDKLLGNEEIRALIT 472 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G+D FD+ K RYH+I+IMTDADVDG+HIRTLLLTFF+R M LI G++YI +P Sbjct: 473 AIGTGFGED-FDLAKARYHRIVIMTDADVDGSHIRTLLLTFFYRYMKPLIDAGYVYIAQP 531 Query: 540 PLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + K+ Y+ ++ LE + G ++ L + Sbjct: 532 PLYRVSGKGRKNGVYLYSDQQLEQFFRENGRQNWSIQRYKGLGEMNPEQLWD 583 Score = 180 bits (456), Expect = 1e-42, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + + + +V V + Sbjct: 450 ILNAEKARRDKLLGNEEIRALITAIGTGFGEDFDLAKARYHRIVIMTDADVDGSHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTIFSIGRKGISMQR 738 F + I + + + + G K + + L GR+ S+QR Sbjct: 510 LTFFYRYMKPLIDAGYVYIAQPPLYRVSGKGRKNGVYLYSDQQLEQFFRENGRQNWSIQR 569 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLW+TTL+P+ R++L+V + DA A+ L S LMG++VEPRREFIQ+++ Sbjct: 570 YKGLGEMNPEQLWDTTLDPENRTMLQVTLEDALAAEQLLSTLMGEQVEPRREFIQQHARE 629 Query: 799 S-ALDI 803 LDI Sbjct: 630 VRNLDI 635 >gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN] gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN] Length = 683 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 274/607 (45%), Positives = 388/607 (63%), Gaps = 20/607 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+DN++N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 28 MADNLENENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 86 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 87 YCSHIEVTINEDNSITVEDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 146 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R G IY+ + G + + G + TGT F P + Sbjct: 147 LHGVGVSCVNALSSHMMSQVFRNGKIYQQEYEKGKPLYSVKIVGDT-DKTGTRQQFWPDA 205 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 IF+ + +D + R+REL+FLN+ ++I+L + ++ + G++ FV Y+ Sbjct: 206 SIFTTTIYQWDIVARRMRELAFLNAGIKITLTDLRPNEEGKTKQEVFHAQEGLKEFVRYV 265 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + I I++A+ +N+ Y+EN+ + NNI +GGTHL+G R+AL Sbjct: 266 DRHRTHLFDDVIYLKTEKQGIPIEVAIMYNNDYNENIHSYVNNINTIEGGTHLTGFRTAL 325 Query: 297 TRQITSYVEKS----FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 326 TRTLKAYADNDTQIAKQIEKAKIEITGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 385 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + LS +LEE+P EAK+I KV+ A+ R AAR+AR+ +RK V+ LPG Sbjct: 386 SGAVQQAVGEALSYYLEENPAEAKLICDKVILAATARIAARKARESVQRKNVMTGGGLPG 445 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK+ E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ ++ Sbjct: 446 KLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEAE 505 Query: 473 EIGTLITALGTGIGQD-----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G D + +KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 506 SVMNIIQSIGVRFGVDGESDFEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMPR 565 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-----IELFCDSKGVI 582 +I G LYI PPLY T K +Y E+ +L +E G + Sbjct: 566 VIEEGHLYIATPPLYKCTFKKVSEYCYTEQQRLQFLEKYVGGDEENKALHTQRYKGLGEM 625 Query: 583 SKNDLRN 589 + L + Sbjct: 626 NPEQLWD 632 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 56/75 (74%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 K + QRYKGLGEMN QLW+TT+NP TR L +V I +A+ AD++FS LMGD+VEP Sbjct: 608 DEENKALHTQRYKGLGEMNPEQLWDTTMNPKTRLLKQVTIENATTADEMFSMLMGDDVEP 667 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 668 RREFIEQNATYANID 682 >gi|321401254|gb|ADW83038.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 292/646 (45%), Positives = 422/646 (65%), Gaps = 13/646 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 2 NQKETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGHCTE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +++ + V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGLHGV Sbjct: 61 IRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS +L++ + ++G IY + GI +P+ + G + + GT V F P + IF+ Sbjct: 121 GVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDATIFT 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239 DF +D L R REL+FLN + + + D+R + GGI +FV +++ + Sbjct: 180 TVDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNEFQFSGGIVSFVEHINEN 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+ALTR Sbjct: 240 KHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTRT 298 Query: 300 ITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ ++++ Sbjct: 299 LNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQT 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLADCS Sbjct: 359 LSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI L+ Sbjct: 419 EKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLV 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY+ + Sbjct: 479 SALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQ 538 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY I GK+ Y ++ E+ L N + + G ++ L +D Sbjct: 539 PPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET-----TMD 593 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + F+E + + Q + A N Sbjct: 594 PSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 RL+ I E S I + + +I R + + + S F Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520 Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743 R IE+ YL L LI +G + + ++G + + +QRYKGLG Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 EMN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 655 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 280/653 (42%), Positives = 399/653 (61%), Gaps = 19/653 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEEKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIVLKEDGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVT 174 SGGLHGVG+SVVNALS W+ + + R+G + F GI L GT + Sbjct: 120 SGGLHGVGISVVNALSEWVHVTVSRDGYEFNQRFEKGIAKGELKSQKQQKKPFRKGTTIC 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGI 229 F P + IF+ F+Y L RLREL++LN V+I D+R +E Y GGI Sbjct: 180 FKPDTSIFTDGIKFDYALLSSRLRELAYLNGGVKIIFRDERQNLSDGSFKEEIYLYDGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y+++ K+ + I + +DN+ ++ A++W D Y +N+L F NNI DGGTH Sbjct: 240 KEYVEYINKEKESIHSEVIYVDSQKDNVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + +K K+ +++ G++ REG T VLS+K+P+P F QTK KL Sbjct: 300 IDGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S + + L ++E +P +I++K + + +AA+RARDL RRK VL+ + Sbjct: 360 NTEVRGIVDSLIGESLIKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +E+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSGAEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + F++N LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEEFNVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + GF+YI PPLY + RGK+ +Y +E L+ + + G + L Sbjct: 540 VEKGFIYIACPPLYKVERGKNHKYCYNENQLKQTIEDFGEKANYNIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + ++ + + +E I + + + + AN Sbjct: 600 WDT-----TMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSAN 647 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 128/329 (38%), Gaps = 35/329 (10%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562 D ++ G +IR L ++P G + + GI + + Sbjct: 325 DKNLSGENIREGLTVVLSVKVPEPEFEGQTKTKLGNTEVRGIVDSLIGESLIKYMEFNPN 384 Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617 + + L + I+ F ++ DL R + ++ + + D + +I + Sbjct: 385 VFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGAEIYIVEGD 444 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINNS 660 +G + ++ LN K + N + Sbjct: 445 SAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFNVN 504 Query: 661 DILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLICNGDKIK 715 + R+ + ++G+ I + F +Y+R + L + G K Sbjct: 505 SLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRDLVEKGFIYIACPPLYKVERGKNHK 562 Query: 716 -ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L TI G K ++QR+KGLGEM QLW+TT+NP TR + RV+I DA +A Sbjct: 563 YCYNENQLKQTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEA 622 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802 D +F+ LMGD+V PRREFI+ + + LD Sbjct: 623 DRIFNILMGDKVAPRREFIETH--SANLD 649 >gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 637 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 292/591 (49%), Positives = 396/591 (67%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + YDA IQ+L+GLD V+KRP MYIG T G GLHH++YE++DN+IDE+L G Sbjct: 1 MAKD--KRHYDASDIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEIVDNSIDEALAGI 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + +N +GS ++DNG GIP D+H + G S E ++T LHAGGKF+ +YKVSGGL Sbjct: 58 CDHIIIKINKNGSVEITDNGSGIPVDIHPQTGKSTVETVLTILHAGGKFDNSAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS+ L +KR G IY F GI + L V G ++TGT + F P Sbjct: 118 HGVGVSVVNALSNKLVATVKRNGKIYRQEFARGIRKSDLEVIGETNTDETGTTIYFEPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F+ + L R RE++FLN ++I ID+R + Y+GGI++FV +++ Sbjct: 178 TIFETVEFSDEVLAKRFREMAFLNKGIKIEFIDER--KDLNEVFHYEGGIKSFVEFINAK 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKP+ I I R+ ++++A+++ D Y E VL F NNI ++GGTHLSG RSALTR Sbjct: 236 KKPVHDEIIYIDEIREETAVEIAIQYTDSYSEVVLSFANNINTEEGGTHLSGFRSALTRT 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y K+ K+ + ++ G+D REG ++V+S+K+PDP+F QTK KL +SE R +V+S Sbjct: 296 LNDYGRKNNIIKEKEENLSGEDVREGISAVISVKLPDPQFEGQTKGKLGNSETRGIVDSV 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +++ L+ +LEE+P K I+ K L A R+AAR+ARDLTR+K L+ +LPGKLADC Sbjct: 356 LSEDLAVFLEENPRVGKQILDKALSARRAREAARKARDLTRKKNNLESMTLPGKLADCQN 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DPK++E+FLVEG+SAGGSAK GR QAILPLRGKI+NVE+AR D+ML+S EI +IT Sbjct: 416 DDPKRNEIFLVEGNSAGGSAKDGRDSAYQAILPLRGKIMNVEKARLDRMLNSSEIRAMIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG++ FD+ KLRY KIIIMTDADVDGAHI TLLLTFFFR M LI G +Y+ + Sbjct: 476 AFGTGIGEE-FDLEKLRYDKIIIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVYVAQA 534 Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLYGI +G + +Y +E+ L L S+ G + L Sbjct: 535 PLYGIEKGTKILRYCHNEKELRLALKEYKDSKVNIKRYKGLGEMDPEQLWE 585 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 14/199 (7%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N + + + + + + + +K + Sbjct: 447 LPLRGKIMNVEKARLDRMLNSSEIRAMITAFGTGIGEEFDLEKLRYDK-----------I 495 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI--KITGPCS 721 + V ++ F F I + L I G KI Sbjct: 496 IIMTDADVDGAHIMTLLLTFFFRYMKPLIEEGHVY-VAQAPLYGIEKGTKILRYCHNEKE 554 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L + ++++RYKGLGEM+ QLWETT+NPD R LL+V I D ++ADD FS LM Sbjct: 555 LRLALKEYKDSKVNIKRYKGLGEMDPEQLWETTMNPDNRLLLKVNIDDLAEADDTFSILM 614 Query: 782 GDEVEPRREFIQENSLPSA 800 G EVEPRR+FI EN++ + Sbjct: 615 GTEVEPRRDFITENAVYAD 633 >gi|194476918|ref|YP_002049097.1| DNA topoisomerase IV subunit B [Paulinella chromatophora] gi|171191925|gb|ACB42887.1| DNA topoisomerase IV subunit B [Paulinella chromatophora] Length = 652 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 296/658 (44%), Positives = 406/658 (61%), Gaps = 17/658 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M D+ + + Y A+ IQ+L+GL V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MIDSSKVQADYGAEQIQVLEGLAPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V+L+ DGS T+SDNGRGIPTD+H G SA E ++T LHAGGKF SYKVSGG Sbjct: 60 HCDEILVSLSEDGSATISDNGRGIPTDIHPHTGKSALETVLTVLHAGGKFGGDSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS WL++ + R+ ++ F G+ L N TGT +TF P + Sbjct: 120 LHGVGVSVVNALSEWLEVTVYRKSQLHHQRFERGVPIGLLTAQPGEENRTGTSLTFKPDT 179 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAF 232 IF+ F+Y TL RLREL++LN V+IS D+R + E YKGGI+ + Sbjct: 180 KIFTTSITFDYSTLAGRLRELAYLNGGVRISFRDERISSGGENGIAYEEVYCYKGGIKEY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291 V+Y+++ K PL I + +D + ++ A++W D Y +++L F NNI DGGTH+ G Sbjct: 240 VAYINKEKDPLHSEIIYVNSHKDGVQVEAALQWCVDTYSDSILGFANNIRTVDGGTHIEG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 L++ LTR + S+ +K K ++ G++ REG T+VLS+K+PDP F QTK KL ++E Sbjct: 300 LKTVLTRTLNSFAKKRGKRKDSDNNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLGNTE 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +V+S V + L+ +LE +P ++I++K + A +AARRAR+L RRK +L+ ++LP Sbjct: 360 VRGIVDSLVGEALTQYLEFNPSVIELILEKAIQAFNAAEAARRARELVRRKSILESSTLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + Sbjct: 420 GKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI LITALG GI + FD LRYH+I+IMTDADVDGAHIRTLLLTFF+R SL+ Sbjct: 480 TEIQALITALGLGIKGEEFDEKSLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQKSLLEG 539 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590 G++YI PPLY + RGK+ Y DE L L G + L + Sbjct: 540 GYIYIACPPLYKVERGKNHTYCYDENDLSTTLKRFREKSNYSIQRFKGLGEMMPKQLWST 599 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 +D + + +E I + + + LN Sbjct: 600 -----TMDPQSRMMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSADLNLAELD 651 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 16/161 (9%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLIC 709 + + RI + ++G+ I + + + + E L + Sbjct: 496 EEFDEKSLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQKSLLEGGYIYIACPPLYKVE 553 Query: 710 NGDKIKI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 G + L + S+QR+KGLGEM QLW TT++P +R + RV Sbjct: 554 RGKNHTYCYDENDLSTTLKRFRE--KSNYSIQRFKGLGEMMPKQLWSTTMDPQSRMMKRV 611 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 +I DA +AD +F+ LMGD+V PRREFI+ +S + LDI Sbjct: 612 EIEDALEADRIFTILMGDKVAPRREFIETHSADLNLAELDI 652 >gi|321401256|gb|ADW83039.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ + V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G IY + GI +P+ + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236 IF+ DF +D L R REL+FLN + + + D+R + GGI +FV ++ Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGSEGESLLRNEFQFSGGIVSFVEHI 236 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+AL Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 TR + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ + Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +++ ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLA Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY I GK+ Y ++ E+ L N + + G ++ L Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + F+E + + Q + A N Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 RL+ I E S I + + +I R + + + S F Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520 Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743 R IE+ YL L LI +G + + ++G + + +QRYKGLG Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 EMN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|24212705|ref|NP_710186.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45655919|ref|YP_000005.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193336|gb|AAN47204.1|AE011192_5 DNA gyrase subunit B [Leptospira interrogans serovar Lai str. 56601] gi|45599152|gb|AAS68642.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|321401260|gb|ADW83041.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401264|gb|ADW83043.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401268|gb|ADW83045.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401272|gb|ADW83047.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401278|gb|ADW83050.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 292/647 (45%), Positives = 423/647 (65%), Gaps = 13/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ D V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G +Y + G+ + + + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238 IF+ DF +D L R REL+FLN + + + D R + + GGI +FV +++ Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+ALTR Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295 Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++ Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLADC Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 SE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI L Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY+ Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK+ YV ++ E+ L N + + G ++ L + Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 D + F+E V + Q + A N Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNVLMGDEVQPRKQFIEVNAAKVANL 637 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684 RL+ I E S I + + +I + ++GS I F Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519 Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 F I + + + + + + + +IG + + +QRYKGLGE Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 MN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNVLMGDEVQPRKQFIEVNAAKVANLD 638 >gi|321401252|gb|ADW83037.1| DNA gyrase subunit B [Leptospira borgpetersenii] Length = 641 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ + V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G IY + GI +P+ + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236 IF+ DF +D L R REL+FLN + + + D+R + GGI +FV ++ Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIIEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+AL Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 TR + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ + Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +++ ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLA Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY Sbjct: 476 VLVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY I GK+ Y ++ E+ L N + + G ++ L Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + F+E + + Q + A N Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 17/240 (7%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 RL+ I E S I + + +I R + + + S F Sbjct: 462 KARLDKILSSEEIRVLVSALGTGIGEDEFNINKI-RYHKIMIMTDADIDGSHIRTLLLTF 520 Query: 694 SNR-----IEENYL----TILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLG 743 R IE+ YL L LI +G + + ++G + + +QRYKGLG Sbjct: 521 FFRYMRPVIEKGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLG 580 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 EMN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 581 EMNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|321401274|gb|ADW83048.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401276|gb|ADW83049.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401280|gb|ADW83051.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 291/647 (44%), Positives = 423/647 (65%), Gaps = 13/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ D V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G +Y + G+ + + + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQIQGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238 IF+ DF +D L R REL+FLN + + + D R + + GGI +FV +++ Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+ALTR Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295 Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++ Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLADC Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 SE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI L Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY+ Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK+ YV ++ E+ L N + + G ++ L + Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 D + F+E + + Q + A N Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANL 637 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684 RL+ I E S I + + +I + ++GS I F Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519 Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 F I + + + + + + + +IG + + +QRYKGLGE Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 MN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638 >gi|24753767|gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira interrogans] gi|321401258|gb|ADW83040.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401262|gb|ADW83042.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401266|gb|ADW83044.1| DNA gyrase subunit B [Leptospira interrogans] gi|321401270|gb|ADW83046.1| DNA gyrase subunit B [Leptospira interrogans] Length = 639 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 292/647 (45%), Positives = 423/647 (65%), Gaps = 13/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQ--EETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ D V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIKISILPDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G +Y + GI + + + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKVYTQKYERGIPVSSVQIQGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEAFVSYLDR 238 IF+ DF +D L R REL+FLN + + + D R + + GGI +FV +++ Sbjct: 177 IFTTVDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+ALTR Sbjct: 237 NKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAALTR 295 Query: 299 QITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ +++ Sbjct: 296 TLNDFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLADC Sbjct: 356 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 415 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 SE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI L Sbjct: 416 SEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVL 475 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ++ALGTGIG+D F+I+K+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY+ Sbjct: 476 VSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 +PPLY I GK+ YV ++ E+ L N + + G ++ L + Sbjct: 536 QPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGEMNPEQLWET-----TM 590 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 D + F+E + + Q + A N Sbjct: 591 DPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANL 637 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 15/239 (6%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 400 KTVLEGGGLPGKLADCSEKDPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 459 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684 RL+ I E S I + + +I + ++GS I F Sbjct: 460 KARLDKILSSEEIRVLVSALGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFF 519 Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 F I + + + + + + + +IG + + +QRYKGLGE Sbjct: 520 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYVYSDKEKEELLKNIGAEKVVIQRYKGLGE 579 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 MN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 580 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEVNAAKVANLD 638 >gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] Length = 640 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 292/592 (49%), Positives = 412/592 (69%), Gaps = 7/592 (1%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M + IQ SYD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G Sbjct: 1 MEEKAIQEQSYDENQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I V + D S TV D+GRGIP +H++ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCSEINVIIEKDNSITVVDDGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS+ L++ ++R+G ++ F G+ L V G A +TGT + F P Sbjct: 120 LHGVGASVVNALSTELEVFVRRDGKLHYQKFERGVPAADLKVIGEAE-ETGTTIHFKPDG 178 Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ ++ Y+ L +R+REL+FLN ++I++ DKR+ + Y+GGI+++V +L+R Sbjct: 179 EIFTETLEYEYEILANRIRELAFLNRGLKITIEDKRAENKKSEYF-YEGGIKSYVEHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L + PI I+G ++ I++++A+++NDG+ N+ + NNI +GGTH SG ++ALTR Sbjct: 238 TKEVLHEEPIYIEGEKEGITVEVAIQYNDGFTGNIYSYANNIHTYEGGTHESGFKTALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SEVR+V ++ Sbjct: 298 VINDYARKNGIFKDSDANLSGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNSEVRTVTDT 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 F +D +L E+P A+ +V+K L A+ R AA++AR+LTRRK L+++SLPGKLADCS Sbjct: 358 FFSDHFEKFLMENPQVARKVVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +I Sbjct: 418 SKDPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG D F+I+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M +I G++YI + Sbjct: 478 TAAGTGIG-DDFEISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY + +GK ++Y +++ L+ + + G ++ L Sbjct: 537 PPLYKVQQGKRVEYAYNDKQLDQIFEELPKAPKPNIQRYKGLGEMNPEQLWE 588 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + S +V Sbjct: 444 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITAAGTGIGDDFEISKARYHKIVIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I + I L + G +++ LD I Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYKVQQGKRVEYAYNDKQLDQI 560 Query: 727 FSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 F K ++QRYKGLGEMN QLWETT++P TR+LL+V + DA +AD+ F LMGD+ Sbjct: 561 FEELPKAPKPNIQRYKGLGEMNPEQLWETTMDPGTRTLLQVSLEDAIEADETFEILMGDK 620 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR+FI++N++ LDI Sbjct: 621 VEPRRQFIEDNAVYVKNLDI 640 >gi|312888910|ref|ZP_07748472.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603] gi|311298651|gb|EFQ75758.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603] Length = 652 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 284/627 (45%), Positives = 400/627 (63%), Gaps = 17/627 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + S+Y AD+IQ+L+GL+AV+KRPSMYIGDT G GLHH++YEV+DN+IDE+L G Sbjct: 1 MSEEKEDKSNYSADNIQVLEGLEAVRKRPSMYIGDT-GVKGLHHLVYEVVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V ++ S TV DNGRGIPT ++ +E SA E++MT LHAGGKF++ +YKVSGG Sbjct: 60 HCDDIKVFIHKGNSITVIDNGRGIPTGINTKEQKSALEIVMTVLHAGGKFDKDTYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ +K + REG I+ + G + G + TGT TF P Sbjct: 120 LHGVGVSCVNALSTHMKTLVYREGKIFTQEYEKGKPIFEVKEIG-VSDHTGTTQTFQPDP 178 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----EITMFYKGGIEAFVS 234 +IF+ ++ ++TL RLREL+FLN +++SL D+R + + +GG+ FV Sbjct: 179 EIFTLTTEYKFETLASRLRELAFLNKGIRLSLTDEREVKEDGTFVCDEFYSEGGLREFVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YLD + ++ PI + G ++ + ++LA ++ND Y ENV + NNI +GGTH+SG R Sbjct: 239 YLDGTRVSIIPEPIYLDGIKNGVPVELAFQYNDTYSENVHSYVNNINTIEGGTHVSGFRR 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 LTR + +Y +K K +K + GDD REG T+++S+K+ +P+F QTK KL ++EV Sbjct: 299 GLTRTLKAYADKEGLLKNNKIEITGDDFREGLTAIISVKVQEPQFEGQTKSKLGNNEVIG 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V + L +LEE+P EAK+IV KVL A+ R AAR+AR++ +RK V+ + LPGKL Sbjct: 359 AVDQAVGEILGNFLEENPKEAKLIVGKVLIAAQARAAARKAREMVQRKNVMGGSGLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ DP EL+LVEGDSAGG+AK GR+R+ QAILPLRGKILNVE+A K+ ++EI Sbjct: 419 ADCANSDPAVCELYLVEGDSAGGTAKMGRNRDYQAILPLRGKILNVEKAMEHKIYENEEI 478 Query: 475 GTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + TALG IG + +KLRYHKI+IMTDADVDG+HI TL+LTFFFR M L+ Sbjct: 479 KNMFTALGVSIGTAEDNKALNLDKLRYHKIVIMTDADVDGSHITTLILTFFFRYMKELVE 538 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G++YI PPLY + +GK +Y E+ E + + E + Sbjct: 539 YGYVYIASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGE----- 593 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAV 617 ++ D + + I+ A Sbjct: 594 MNAIQLWDTTMNPETRTLRRATIDNAA 620 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 5/109 (4%) Query: 700 NYLTILSLICNGDKIK---ITGPCSLLDTIFSIGRKGISM--QRYKGLGEMNASQLWETT 754 L L+ G + + G K S+ QRYKGLGEMNA QLW+TT Sbjct: 544 IASPPLYLVKKGKEQEYCWTEDQREAAIQRLKGGGKEESVHTQRYKGLGEMNAIQLWDTT 603 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +NP+TR+L R I +A++ D FS LMGDEV PRREFI++N+ + +DI Sbjct: 604 MNPETRTLRRATIDNAAECDHTFSMLMGDEVAPRREFIEKNAKYARIDI 652 >gi|72383051|ref|YP_292406.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A] gi|72002901|gb|AAZ58703.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL2A] Length = 655 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 293/638 (45%), Positives = 401/638 (62%), Gaps = 19/638 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSKDSKVQAAYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D IT+ L DGS +VSDNGRGIPTDLH G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDQITILLCEDGSASVSDNGRGIPTDLHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFL 176 LHGVG+SVVNALS W+++ ++R+ ++ F G L S N TGT V F Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229 P IF+ F Y L RLREL++LN V+I D+R S P E FY+GGI Sbjct: 180 PDDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPYEEVYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y+ + K L I + +D + ++ AM+W D Y +++L F NNI DGGTH Sbjct: 240 KEYVEYMTKAKDSLHPEIIYVNSEKDGVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + S+ +K K ++ G++ REG T+VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGTALSQYLEFNPGVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ KM Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + F++ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY +TRGK+ +Y +E ++ L + G + L Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 +D + + +E I + + Sbjct: 600 WET-----TMDPTTRMMKRVEIEDALEADRIFTILMGD 632 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711 + ++ R R V ++G+ I + + + + E L + G Sbjct: 499 EDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRG 558 Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 K + T+ S G K ++QR+KGLGEM QLWETT++P TR + RV+I D Sbjct: 559 KNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWETTMDPTTRMMKRVEIED 618 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 A +AD +F+ LMGD+V PRREFI+ + LD Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETH--SVDLD 649 >gi|257051220|ref|YP_003129053.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940] gi|256689983|gb|ACV10320.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940] Length = 637 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 281/592 (47%), Positives = 395/592 (66%), Gaps = 10/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD+ ++Y A IQ+L+GL AV+KRP+MYIG TD GLHH++YEV+DNAIDE+L G+ Sbjct: 1 MSDD---NAYGAGQIQVLEGLQAVQKRPAMYIGSTD-TRGLHHLVYEVVDNAIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ DGS +V+D+GRGIP D+H+E A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDHIEVTIHDDGSVSVTDDGRGIPIDIHEEYDRPAVEVIMTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178 HGVGVSVVNALS L++ + REGN+++ +F +G + L ++TGT + F P Sbjct: 117 HGVGVSVVNALSQKLEVEVSREGNVWKQTFDHGAPADDLTEIRSLDDPDETGTTIRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF DF + TL +RLREL+FLNS V+I+L E R T Y+GGI FV YL+ Sbjct: 177 EEIFETTDFQFSTLANRLRELAFLNSGVEITL--ADDREERAETFQYEGGIREFVEYLNE 234 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K PL + + +I +++A++ ++ F NNI ++GG+HL+G ++ALTR Sbjct: 235 TKDPLHDEVVYFEDEDQDIQVEVALQATTELQGSIHAFANNINTREGGSHLTGFKTALTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y + + ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR VVES Sbjct: 295 VVNDYATTNDLLSDIEETLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGVVES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +++ L + EE+P A+ IV+K ++A+ R AA++A +LTRRK L+ +LPGKLADC Sbjct: 355 AMHENLGTYFEENPAVAQAIVRKAVEAAKARKAAQKAEELTRRKSALESTALPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP ++ELF+ EGDSAGGSAKQ R+ + QA+LP+RGKILNVE+ R D++L +++I +I Sbjct: 415 TKDPSRAELFIAEGDSAGGSAKQARNPDFQAVLPIRGKILNVEKHRLDRILENEQIRNII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTG+G D FD+++LRY KII TDADVDGAHIRTLLLTFF+R M L+ G +Y + Sbjct: 475 TALGTGVG-DEFDLDELRYEKIIFATDADVDGAHIRTLLLTFFYRHMRPLLEGGHVYAAR 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589 PPLY I + ++ + + + G ++ L + Sbjct: 534 PPLYRIRYRGETYDAMTDAERDEIIEEKCNGNPTQIQRFKGLGEMNPQQLWD 585 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ N + + + + ++ V + Sbjct: 453 ILNVEKHRLDRILENEQIRNIITALGTGVGDEFDLDELRYEKIIFATDADVDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F + + + + + G+ D I G +QR Sbjct: 513 LTFFYRHMRPLLEGGHVYAARPPLYRIRYRGETYDAMTDAER-DEIIEEKCNGNPTQIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +KGLGEMN QLW+TT+NP+ R L R+ I DA+ AD +FS LMGD VEPR++FI+E+S Sbjct: 572 FKGLGEMNPQQLWDTTMNPENRFLKRITIDDAAAADKMFSVLMGDAVEPRKQFIKEHSPE 631 Query: 799 SA-LDI 803 + +DI Sbjct: 632 AEWVDI 637 >gi|116326860|ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116119604|gb|ABJ77647.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 641 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 293/649 (45%), Positives = 422/649 (65%), Gaps = 15/649 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +SY A I+IL+GL+AV+KRP MYIG T E+GLH M+YEV+DN++DE++ G+ Sbjct: 1 MSQK--ETSYSAGQIKILEGLEAVRKRPGMYIG-TQDETGLHKMVYEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I +++ + V DNGRGIP D+H ++ IS EV+MT LHAGGKF +YKVSGGL Sbjct: 58 CTEIRISILPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS +L++ + ++G IY + GI +P+ + G + + GT V F P + Sbjct: 118 HGVGVSVVNALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSS-ERGTIVRFKPDAT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYL 236 IF+ DF +D L R REL+FLN + + + D+R + GGI +FV ++ Sbjct: 177 IFTTVDFQFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHI 236 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K P+ I + ++D++ ++++++++ Y EN+ CFTNNI GGTHL G R+AL Sbjct: 237 NENKHPMH-KVIHFERNKDDVLAEISIQYSETYTENIFCFTNNINNNLGGTHLEGFRAAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 TR + +++K K + G+D +EG T+V+SIK+P P+F+SQTKEKLV++E++ + Sbjct: 296 TRTLNDFLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +++ ++GL+ + EE+P K I++K + ++ R+AAR+ARDLTRRK VL+ LPGKLA Sbjct: 356 MQTLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLA 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP SEL+LVEGDSAGGSAKQGR R QAILPL+GKILNVE+AR DK+LSS+EI Sbjct: 416 DCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIR 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L++ALGTGIG+D F+INK+RYHKI+IMTDAD+DG+HIRTLLLTFFFR M +I G+LY Sbjct: 476 ILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + +PPLY I GK+ Y ++ E+ L N + + G ++ L Sbjct: 536 VAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGEMNPEQLWET----- 590 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + F+E + + Q + A N Sbjct: 591 TMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANL 639 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 15/239 (6%) Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 K V+ L + D + D + Y + A N ++ + + + Sbjct: 402 KTVLEGGGLPGKLADCSEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVE 461 Query: 639 ANRLNFIAEKSEKSWHGS-----INNSDILVKRIARG---VQEQFVLEGSSI------FS 684 RL+ I E S I + + +I + ++GS I F Sbjct: 462 KARLDKILSSEEIRILVSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFF 521 Query: 685 FGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGE 744 F I + + + + + + ++G + + +QRYKGLGE Sbjct: 522 FRYMRPVIERGYLYVAQPPLYLIKHGKNSTYAYSDKEKEELLKNVGTEKVVIQRYKGLGE 581 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN-SLPSALD 802 MN QLWETT++P R +L+VK+ D +A++ F+ LMGDEV+PR++FI+ N + + LD Sbjct: 582 MNPEQLWETTMDPSNRVVLKVKLDDFVEAEETFNILMGDEVQPRKQFIEINAAKVANLD 640 >gi|51891144|ref|YP_073835.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863] gi|51854833|dbj|BAD38991.1| DNA gyrase B subunit [Symbiobacterium thermophilum IAM 14863] Length = 638 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 305/642 (47%), Positives = 413/642 (64%), Gaps = 13/642 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y + IQ+L+GL+AV++RP MYIG T + GLHH+I+E++DNA+DE L G+ D I V Sbjct: 6 TEQYTGEQIQVLEGLEAVRRRPGMYIGGTS-QRGLHHLIWEIIDNAVDERLAGFCDKIVV 64 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL+ DGS +VSDNGRGIP D+H + GIS E + T LHAGGKF +YKVSGGLHGVG + Sbjct: 65 TLHSDGSVSVSDNGRGIPVDIHPKTGISTVETVYTMLHAGGKFGGGAYKVSGGLHGVGAA 124 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS L +++K+ G +YE+ F N G PL G + GT V F P +IF Sbjct: 125 VVNALSRKLYIQVKQNGGVYEVEFANGGKTLYPLRRVGDTK-EHGTYVRFWPDPEIFESV 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+ + + RLR+ +FLN + I ID+++ E Y G++ FV YL+R ++PL Sbjct: 184 EFDSEAIVTRLRDTAFLNQGLFIQFIDEKAG--AEYRFKYNEGLQTFVQYLNRSREPLHA 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI + + D ++LA+++ D Y EN+L F NNI +GGTH +GL++ALTR I SY Sbjct: 242 KPIYVFKATDTQEMELAIQYTDAYSENILSFANNIRTVEGGTHETGLKTALTRVINSYAR 301 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K K ++ ++ G+D REG T++LS+K+ +P+F QTK KL SSE+ + V + V++GLS Sbjct: 302 KYKLLKDNEDNLSGEDIREGMTAILSVKLQEPQFEGQTKTKLGSSEMETFVAAAVSEGLS 361 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P AK IV+K L A+ R+AAR+AR+L RRK L+I +LPGKL DC+ RDP +S Sbjct: 362 DFLEENPAIAKRIVEKALSAARAREAARKARELVRRKSALEITALPGKLTDCTSRDPSES 421 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELFLVEGDSAGGSAK GR R QA+LPLRGKILNVE+AR DK+LS++EI TLITA+G GI Sbjct: 422 ELFLVEGDSAGGSAKMGRDRRIQAVLPLRGKILNVEKARLDKILSNEEIRTLITAVGAGI 481 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI+K RYHK+IIMTDADVDG+HIRTLLLTFFFR M LI G+LYI PPLY I Sbjct: 482 G-DDFDISKCRYHKVIIMTDADVDGSHIRTLLLTFFFRFMRPLIEAGYLYIASPPLYMIR 540 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK + Y E+ + + + G ++ L +D + Y Sbjct: 541 KGKQVYYAYSEQEKDQVIARIGGVTDKPQRYKGLGEMNPEQLWET-----TMDPSKRILY 595 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLA--SKLANRLNFI 645 + E + E + + + L L+ I Sbjct: 596 KVTMEDAAEATALFETLMGEKVEPRREFIQRNAHLVQNLDTI 637 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT++P R L +V + DA++A LF LMG++VEPRREFIQ N+ Sbjct: 569 QRYKGLGEMNPEQLWETTMDPSKRILYKVTMEDAAEATALFETLMGEKVEPRREFIQRNA 628 Query: 797 -LPSALD 802 L LD Sbjct: 629 HLVQNLD 635 >gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 639 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 298/592 (50%), Positives = 401/592 (67%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N +N Y A+ IQ+L GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L G Sbjct: 1 MKEN-KNRQYGAEDIQVLTGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNSIDEALAGI 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + D S +VSDNG GIPT++H + G S E ++T LHAGGKFN +YKVSGGL Sbjct: 59 CDHILVEIYEDNSVSVSDNGSGIPTEIHPQTGKSTVETVLTILHAGGKFNNGAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVGVSVVNALS+ L + +KR GNIYE F GI L+ +TGT++ F P Sbjct: 119 HGVGVSVVNALSTELIVNVKRNGNIYEQKFSRGIAKTQLIEVEKLKKEETGTKIFFRPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +F ++ L R RE++FLN ++I ID R + T Y+GGI++FV Y++R Sbjct: 179 EIFDTVEFEFEILSKRFREMAFLNKGIKIQFIDHRIGKD--ETYHYEGGIKSFVEYINRK 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + I I R+N ++++A+++ D Y EN+L F NNI ++GG+HLSG RSALTR Sbjct: 237 KTAIHKEIIYIDEIRENTAVEIALQYTDSYTENILTFANNINTEEGGSHLSGFRSALTRC 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K K+ + ++ G+D REG T V+S+K+P+P+F QTK KL +SE R +V+S Sbjct: 297 INDYGRKYNIIKEKEENLSGEDVREGLTGVISVKLPNPQFEGQTKAKLGNSETRGIVDSS 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ LS++LEE+P AK I++K L A R+AAR+ARDLTR+K +L+ +LPGKLADC Sbjct: 357 VSENLSSFLEENPKVAKTILEKSLSARRAREAARKARDLTRKKNILESMTLPGKLADCQN 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 D + +E+FLVEGDSAGGSAK R QAILPLRGKI+NVE+AR DK+L+S EI +IT Sbjct: 417 SDNETTEIFLVEGDSAGGSAKDARDSVFQAILPLRGKIMNVEKARLDKILNSDEIKAMIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + F I+ LRY+KIIIMTDADVDGAHI TLLLTFFFR M LI G +Y+ +P Sbjct: 477 AFGTGIGSE-FSIDNLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIEEGHVYVAQP 535 Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+GI +G +Y D+ L+ L ++ G ++ DL Sbjct: 536 PLFGILKGTKALRYCYDDRELQRALNELGRDKKFDIKRYKGLGEMNPEDLWE 587 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + + + ++ V ++ Sbjct: 454 IMNVEKARLDKILNSDEIKAMITAFGTGIGSEFSIDNLRYNKIIIMTDADVDGAHIMTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGR-KGISMQR 738 F F I + + ++ ++ L + +GR K ++R Sbjct: 514 LTFFFRYMRPLIEEGHVYVAQPPLFGILKGTKALRYCYDDRELQRALNELGRDKKFDIKR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN LWETT+NPD R LL+V+I DA +AD+ FS LMG EVEPRR+FIQEN+L Sbjct: 574 YKGLGEMNPEDLWETTMNPDHRILLKVEIKDAIEADETFSMLMGSEVEPRRDFIQENALF 633 Query: 799 S-ALD 802 +D Sbjct: 634 VENID 638 >gi|294508443|ref|YP_003572501.1| DNA gyrase subunit B [Salinibacter ruber M8] gi|294344771|emb|CBH25549.1| DNA gyrase subunit B [Salinibacter ruber M8] Length = 698 Score = 595 bits (1534), Expect = e-167, Method: Composition-based stats. Identities = 289/602 (48%), Positives = 400/602 (66%), Gaps = 14/602 (2%) Query: 1 MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ S Y A +IQ+L+GL+AV+KRPSMYIGD G GLHH++YEVLDN+IDE Sbjct: 47 MSETTDLPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDV-GLRGLHHLVYEVLDNSIDE 105 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 ++ G+ D I V + DGS ++ DNGRGIP D H E SA EV+MT LHAGGKF++ SY+ Sbjct: 106 AMAGHCDEIGVEIYEDGSVSIEDNGRGIPVDQHPAEDRSALEVVMTVLHAGGKFDKDSYQ 165 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEV 173 VSGGLHGVGVSVVNAL+S ++ + R+G+++E +++ G+ ++P+ AG +TGT + Sbjct: 166 VSGGLHGVGVSVVNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRI 225 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISL--IDKRSPEPREITMFYKGGIEA 231 F P DIF +F ++TL RLREL+FLN+ V+I + + T + GI Sbjct: 226 RFWPDGDIFKTTEFRFETLSDRLRELAFLNAGVRIRVEDHREEDEGLARETYHSEEGIIG 285 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV YLD + ++ I I + + ++LAM++ND Y++NVL F NNI +GGTH++G Sbjct: 286 FVDYLDEARDSILDETIYIAETDGEVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTG 345 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R ALTR + Y +K+ K + GDD REG T+VLS+K+ +P+F QTK KL +S+ Sbjct: 346 FRRALTRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSD 405 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ +VES +N L WLE+HP +A+ I++KV+ A+ R AAR+AR+L +RK SLP Sbjct: 406 VQGIVESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLP 465 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP++ EL+LVEGDSAGGSAKQ R R QAILPLRGKILNVE+AR D++L Sbjct: 466 GKLADCSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEH 525 Query: 472 QEIGTLITALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +I ++TALGTG+ ++ F++N++RYHKI++MTDADVDGAHIR+LLLTFF+RQ+ LI Sbjct: 526 DQIQNIVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLI 585 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDL 587 G +YI PPLY I G Y +E ++ + G ++ L Sbjct: 586 EKGNIYIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNSPSMQRYKGLGEMNPEQL 645 Query: 588 RN 589 Sbjct: 646 WT 647 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 4/204 (1%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + I V D+ + + L +E+ ++ + Sbjct: 495 QARDRHFQAILPLRGKILNVEKARLDRILEHDQIQNIVTALGTGLTSTEEEFNMNEMRYH 554 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 +V V + F + I I + + +I Sbjct: 555 KIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNIYIALPPLYRIQNGSQEIYCWSDEE 614 Query: 722 L---LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + + + + G SMQRYKGLGEMN QLW TT+NP+TR + +V I DA+ AD LFS Sbjct: 615 MQTRMAELRADG-NSPSMQRYKGLGEMNPEQLWTTTMNPETRKIQQVTIQDAAAADRLFS 673 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMGD VEPRREFI+ N+ + +D Sbjct: 674 TLMGDSVEPRREFIERNAKYATID 697 >gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901] gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 635 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 304/589 (51%), Positives = 414/589 (70%), Gaps = 6/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M Y A+ IQ+LKGL+ V+KRP+MYIG T+ E GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MELEKNGIKYGAEEIQVLKGLEGVRKRPAMYIGSTN-EKGLHHLVYEVVDNSIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ DGS TV+DNGRGIP D+H E G A EV++T LHAGGKF YKVSGGL Sbjct: 60 CNRIEVIIHKDGSITVADNGRGIPVDIHPEVGKPAVEVVLTMLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++RIKR+GN+Y F G L + G + TGT +TF P ++ Sbjct: 120 HGVGVSVVNALSEWLEVRIKRDGNLYYQKFSRGEPITELKIIGKSK-STGTIITFKPDAE 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +FNYDTL RL ELS+LN +V+I L D+R + + GGI+ ++ YL+++K Sbjct: 179 IFETVEFNYDTLAKRLLELSYLNKNVKIILKDERINKE--EIFEHSGGIKDYLKYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL I + +D + +++A+++ + + EN+L FTNNI +GGTH G ++ALTR I Sbjct: 237 EPLH-KIIYFEKEKDEVVVEVALQYCNSFSENILSFTNNINTTEGGTHEIGFKTALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K++ S+ G+D REG T+++S+K+PDP+F QTK KLV++EVRS+V+S V Sbjct: 296 NDYAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +D LS +LEE+P K +++ + A+ R+AAR+AR+L RRK L+ +LPGKLADCSE+ Sbjct: 356 SDYLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP EL+LVEGDSAGGSAKQGR R QAILPLRGKILNVE++R DK+L+++EI +ITA Sbjct: 416 DPSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTG+ +D FDI K RYH++IIMTDADVDGAHIRTLLLTFF+R + LI NG++YI +PP Sbjct: 476 LGTGVDKD-FDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + +GK +Y+ ++ LE YL G + L Sbjct: 535 LYKVKKGKLEKYLYSDDELERYLNEIGREGVTIQRYKGLGEMDPEQLWE 583 Score = 190 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 98/186 (52%), Gaps = 5/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + +K + L+ V + + Sbjct: 452 ILNVEKSRLDKILANEEIRAMITALGTGVDKDFDIEKARYHRLIIMTDADVDGAHI--RT 509 Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGD-KIKITGPCSLLDTIFSIGRKGISMQR 738 + +F +Y R + N L + G + + L + IGR+G+++QR Sbjct: 510 LLLTFFYRYLRPLIENGYVYIAQPPLYKVKKGKLEKYLYSDDELERYLNEIGREGVTIQR 569 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT+NP+TR++L+V + DA++AD++F+ LMGD+VEPRREFI++N+ Sbjct: 570 YKGLGEMDPEQLWETTMNPETRTILKVTLEDAAKADEIFTILMGDKVEPRREFIEKNAKL 629 Query: 799 S-ALDI 803 LDI Sbjct: 630 VRNLDI 635 >gi|83816748|ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855] gi|83758142|gb|ABC46255.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855] Length = 652 Score = 595 bits (1533), Expect = e-167, Method: Composition-based stats. Identities = 291/602 (48%), Positives = 402/602 (66%), Gaps = 14/602 (2%) Query: 1 MSDNI-----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ S Y A +IQ+L+GL+AV+KRPSMYIGD G GLHH++YEVLDN+IDE Sbjct: 1 MSETTDLPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDV-GLRGLHHLVYEVLDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 ++ G+ D I V + DGS ++ DNGRGIP D H E SA EV+MT LHAGGKF++ SY+ Sbjct: 60 AMAGHCDEIGVEIYEDGSVSIEDNGRGIPVDQHPAEDRSALEVVMTVLHAGGKFDKDSYQ 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEV 173 VSGGLHGVGVSVVNAL+S ++ + R+G+++E +++ G+ ++P+ AG +TGT + Sbjct: 120 VSGGLHGVGVSVVNALASRFEVTVWRDGSVWEQNYLCGVPEDPVRRVRPMEAGEETGTRI 179 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP--REITMFYKGGIEA 231 F P DIF +F ++TL RLREL+FLN+ V+I + D R + T + GI Sbjct: 180 RFWPDGDIFKTTEFRFETLSDRLRELAFLNAGVRIRVEDHREEDKGLARETYHSEEGIIG 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV YLD + ++ I I + + ++LAM++ND Y++NVL F NNI +GGTH++G Sbjct: 240 FVDYLDEARDSILDETIYIAETDGEVPVELAMQYNDEYNKNVLSFVNNINTHEGGTHVTG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R ALTR + Y +K+ K + GDD REG T+VLS+K+ +P+F QTK KL +S+ Sbjct: 300 FRRALTRTLKRYAQKNDMLSDLKFDLSGDDFREGLTAVLSVKVSEPQFEGQTKTKLGNSD 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ +VES +N L WLE+HP +A+ I++KV+ A+ R AAR+AR+L +RK SLP Sbjct: 360 VQGIVESLINTELGRWLEDHPDQAERIIEKVIQAAEARAAARKARELVQRKDAFSGGSLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RDP++ EL+LVEGDSAGGSAKQ R R QAILPLRGKILNVE+AR D++L Sbjct: 420 GKLADCSSRDPEEGELYLVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARLDRILEH 479 Query: 472 QEIGTLITALGTGI--GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +I ++TALGTG+ ++ F++N++RYHKI++MTDADVDGAHIR+LLLTFF+RQ+ LI Sbjct: 480 DQIQNIVTALGTGLTSTEEEFNMNEMRYHKIVMMTDADVDGAHIRSLLLTFFYRQLRPLI 539 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDL 587 G +YI PPLY I G Y +E ++ + G ++ L Sbjct: 540 EKGNIYIALPPLYRIQNGSQEIYCWSDEEMQTRMAELRADGNSPSMQRYKGLGEMNPEQL 599 Query: 588 RN 589 Sbjct: 600 WT 601 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 4/204 (1%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + I V D+ + + L +E+ ++ + Sbjct: 449 QARDRHFQAILPLRGKILNVEKARLDRILEHDQIQNIVTALGTGLTSTEEEFNMNEMRYH 508 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 +V V + F + I I + + +I Sbjct: 509 KIVMMTDADVDGAHIRSLLLTFFYRQLRPLIEKGNIYIALPPLYRIQNGSQEIYCWSDEE 568 Query: 722 L---LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + + + + G SMQRYKGLGEMN QLW TT+NP+TR + +V I DA+ AD LFS Sbjct: 569 MQTRMAELRADG-NSPSMQRYKGLGEMNPEQLWTTTMNPETRKIQQVTIQDAAAADRLFS 627 Query: 779 RLMGDEVEPRREFIQENSLPSALD 802 LMGD VEPRREFI+ N+ + +D Sbjct: 628 TLMGDSVEPRREFIERNAKYATID 651 >gi|124026793|ref|YP_001015908.1| DNA gyrase subunit B [Prochlorococcus marinus str. NATL1A] gi|123961861|gb|ABM76644.1| DNA gyrase, subunit B [Prochlorococcus marinus str. NATL1A] Length = 655 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 293/638 (45%), Positives = 401/638 (62%), Gaps = 19/638 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS + + +Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L G Sbjct: 1 MSKDSKVQEAYGAEQIQVLEGLEPVRKRPGMYIGST-GSKGLHHLVYEVVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D IT+ L DGS +VSDNGRGIPTDLH G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCDQITILLCEDGSASVSDNGRGIPTDLHPRTGKSALETVLTVLHAGGKFGSGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFL 176 LHGVG+SVVNALS W+++ ++R+ ++ F G L S N TGT V F Sbjct: 120 LHGVGISVVNALSEWVEVTVRRQQQVHFQRFERGASIGSLKSENLSKSDKNLTGTTVCFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGI 229 P IF+ F Y L RLREL++LN V+I D+R S P E FY+GGI Sbjct: 180 PDDQIFTDGISFEYGILSSRLRELAYLNGGVRIVFRDERKQSNDSSQTPHEEVYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y+ + K L I + +D + ++ AM+W D Y +++L F NNI DGGTH Sbjct: 240 KEYVEYMTKAKDSLHPEIIYVNSEKDGVQVEAAMQWCVDAYSDSILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + S+ +K K ++ G++ REG T+VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTLNSFAKKRGKRKDGDSNLAGENIREGLTAVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGTSLSQYLEFNPNVIDLILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ KM Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDAKM 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + F++ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY +TRGK+ +Y +E ++ L + G + L Sbjct: 540 VEGGYIYIACPPLYKVTRGKNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 + +D + + +E I + + Sbjct: 600 WDT-----TMDPTTRMMKRVEIEDALEADRIFTILMGD 632 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711 + ++ R R V ++G+ I + + + + E L + G Sbjct: 499 EDFEVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKDLVEGGYIYIACPPLYKVTRG 558 Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 K + T+ S G K ++QR+KGLGEM QLW+TT++P TR + RV+I D Sbjct: 559 KNHKYCYNESDMQKTLASFGEKANYTIQRFKGLGEMMPKQLWDTTMDPTTRMMKRVEIED 618 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 A +AD +F+ LMGD+V PRREFI+ + LD Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETH--SVDLD 649 >gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676] gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676] Length = 640 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENTYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY +++ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 553 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQEN+ LDI Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24] gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24] Length = 642 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 290/594 (48%), Positives = 409/594 (68%), Gaps = 9/594 (1%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVS Sbjct: 60 AGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P Sbjct: 120 GGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L Sbjct: 179 DPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++AL Sbjct: 238 NRSKQPIHEDPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ Sbjct: 298 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLAD Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +PPL+ I +GK +QY +++ LE L + G ++ L Sbjct: 537 AQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 89/448 (19%), Positives = 154/448 (34%), Gaps = 47/448 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P + VEG G + Sbjct: 209 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEDPVYVEGSKDGIQVEVSLQYN- 267 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 268 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 315 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 316 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 375 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 376 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 435 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 436 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 495 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 496 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 554 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 555 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 614 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQEN+ LDI Sbjct: 615 FEILMGDKVEPRRNFIQENAKYVKNLDI 642 >gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579] gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579] gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 642 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 290/594 (48%), Positives = 409/594 (68%), Gaps = 9/594 (1%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVS Sbjct: 60 AGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P Sbjct: 120 GGLHGVGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L Sbjct: 179 DPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++AL Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ Sbjct: 298 TRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLAD Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +PPL+ I +GK +QY +++ LE L + G ++ L Sbjct: 537 AQPPLFKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 209 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 267 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 268 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 315 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 316 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 375 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 376 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 435 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 436 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 495 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 496 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 554 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 555 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 614 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQEN+ LDI Sbjct: 615 FEILMGDKVEPRRNFIQENAKYVKNLDI 642 >gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293] gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293] Length = 640 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPAQLWE 588 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L I G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPAQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134] gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264] gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185] gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15] gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4] gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550] gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W] gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876] gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171] gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579] gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134] gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264] gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876] gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W] gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550] gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4] gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15] gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185] gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171] Length = 640 Score = 594 bits (1532), Expect = e-167, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY +++ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 90/448 (20%), Positives = 154/448 (34%), Gaps = 47/448 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 553 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQEN+ LDI Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 640 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY ++ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNDNELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats. Identities = 90/448 (20%), Positives = 155/448 (34%), Gaps = 47/448 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 207 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 265 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 266 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 313 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 314 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 373 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 374 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 433 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 434 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 493 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 494 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 552 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 553 NDNELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 612 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 F LMGD+VEPRR FIQEN+ LDI Sbjct: 613 FEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames] gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne] gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bacillus anthracis str. A2012] gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488] gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442] gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193] gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465] gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389] gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174] gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I] gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W] gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99] gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108] gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97] gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187] gi|218901211|ref|YP_002449045.1| DNA gyrase, B subunit [Bacillus cereus AH820] gi|227812683|ref|YP_002812692.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684] gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201] gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26] gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1] gi|229603398|ref|YP_002864662.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248] gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066] gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055] gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B] gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum] gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94] gi|49066055|sp|Q9X3Y6|GYRB_BACAN RecName: Full=DNA gyrase subunit B gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames] gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne] gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis] gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488] gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193] gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442] gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389] gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465] gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174] gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I] gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W] gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108] gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99] gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97] gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187] gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820] gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684] gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1] gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26] gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201] gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248] Length = 640 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|217967929|ref|YP_002353435.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724] gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724] Length = 635 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 298/642 (46%), Positives = 415/642 (64%), Gaps = 14/642 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y ADSIQIL+G +AV++RP MYIGDT G GLHH+I+E++DN+IDE + GY + I Sbjct: 4 TKKDKYTADSIQILEGTEAVRRRPGMYIGDT-GIRGLHHLIFELVDNSIDEVMAGYCNYI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L DGS V+DNGRGIP D+H + A EV++T LHAGGKF+ YK+SGGLHGVG Sbjct: 63 LVELKKDGSVVVADNGRGIPVDIHPQAKKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALSS L++ + R+G I+ + G PL V G ++TGT++ F P S+IF Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQGYEKGKPVMPLTVRGET-DETGTKIRFYPDSEIFET 181 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD + +RLREL+FLN +V I L D+R+ + Y+GG+ F+ YL + K+ L Sbjct: 182 TKFDYDIVANRLRELAFLNPNVTIELRDERTGKSN--VFKYEGGLLEFIEYLSKGKEILH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI ++ +N+ +++ M++N GY E +L + NNI +GGTH++G R+ALTR + ++ Sbjct: 240 -EPIYMRREEENLIVEIVMQYNSGYDELILSYANNIHTIEGGTHVTGFRTALTRVVNNFA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+++ S+ GDD REG T+++S+K+PDP+F QTK KL ++EVR VE V + L Sbjct: 299 RNWGLWKENE-SLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEEL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + E+P K+I+ K+++A R AAR+AR+L RRK +L+ + LPGKLADCSERDP+K Sbjct: 358 TEYFSENPEVGKLIISKIIEAYRARQAARKARELVRRKSLLESSLLPGKLADCSERDPEK 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSSQEIGTLITALGT 483 ELF+VEG+SAGGSAKQ R R QAILPLRGKILNVE+A+ K+LSS+EI +I +LGT Sbjct: 418 CELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGT 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R LI G++YI +PPLY Sbjct: 478 GIG-QDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYL 536 Query: 544 ITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK +Y EE E+ L G + LR +D + Sbjct: 537 LKKGKEERYAYSEEEKEEILREWGYPDNVYIQRYKGLGEMDPEQLRET-----TMDPQKR 591 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E + + + +E + K N Sbjct: 592 ILLQVTIEDALEAERLFSILMGNNVEERRSFIEQKAKFVRNL 633 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 7/120 (5%) Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGE 744 R F IE Y+ I L ++ + + G + +QRYKGLGE Sbjct: 516 RHFRPLIEGGYIYIAQPPLYLLKKGKEERYAYSEEEKEEILREWGYPDNVYIQRYKGLGE 575 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 M+ QL ETT++P R LL+V I DA +A+ LFS LMG+ VE RR FI++ + LDI Sbjct: 576 MDPEQLRETTMDPQKRILLQVTIEDALEAERLFSILMGNNVEERRSFIEQKAKFVRNLDI 635 >gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987] gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987] gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 640 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L I G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102] gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102] Length = 640 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 160/474 (33%), Gaps = 47/474 (9%) Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERD 421 + E A + + ++ R+ ++K + + + Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ 240 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P E VEG G + G N+ ++ Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTH 287 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI--- 536 G + K I+ DAD + G +R L + P+ G Sbjct: 288 EVGFKTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLG 347 Query: 537 ---IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKN 585 + + +++ + ++ ++ + +++ K + + Sbjct: 348 NSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVS 407 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 L + D D I + Y + A + ++ + + + RL+ I Sbjct: 408 SLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKI 467 Query: 646 AEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRI 692 E + + DI R + V + F + + I Sbjct: 468 LSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQII 527 Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750 I L + G KI+ L+ I + + +QRYKGLGEMN +QL Sbjct: 528 EHGYIY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQL 586 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 587 WETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam] gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam] Length = 645 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 289/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 9 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 68 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 128 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 187 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 245 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 246 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 306 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 366 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 426 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 486 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 545 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 593 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 193 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 252 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 253 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 299 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 300 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 359 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 360 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 419 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 420 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 479 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 480 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 538 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 539 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 598 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 599 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 645 >gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1] gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1] Length = 640 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 290/589 (49%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + I +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKIQQGKKIQYAYNEKELEKILDELPAQPKPGIQRYKGLGEMNPAQLWE 588 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 158/467 (33%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L I G KI+ L+ I + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKIQQGKKIQYAYNEKELEKILDELPAQPKPGIQRYKGLGEMNPAQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|256831260|ref|YP_003159987.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603] gi|256684791|gb|ACV07684.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603] Length = 686 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 276/639 (43%), Positives = 389/639 (60%), Gaps = 29/639 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +YDA++I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+ D I Sbjct: 22 QHQGAYDANAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHCDTI 80 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ DG+ VSDNGRGIP +H EG EV+MT LHAGGKF Y VSGGLHGVG Sbjct: 81 NVTILEDGALEVSDNGRGIPVAIHPTEGRPTVEVVMTILHAGGKFGGSGYAVSGGLHGVG 140 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 +SVVNALSS ++ I+R+G + SF + G L G + GT TF P +DIF Sbjct: 141 ISVVNALSSRVETVIRRDGYTWHQSFADGGKPVGELRQ-GEPTEEKGTTQTFWPDADIFE 199 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-------------------PREITMF 224 DF+++TL+ R ++++FLN + I+L DKR + +T Sbjct: 200 TVDFDFETLRARFQQMAFLNKGLSITLTDKRPDHADVSGDEVAGGDNSPTSERIKTVTYK 259 Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y G+ +V +L+ K + + I IS+++AM+W Y E+V + N I Sbjct: 260 YDAGLLDYVHHLNTAKRVEVIHDEIIDFDAEDTDRKISVEIAMQWTTAYSESVHTYANTI 319 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT I Y K+ ++ G+D REG T+V+S+K+ +P+F Sbjct: 320 STTEGGTHEEGFRAALTSLINRYARAKNILKEKDDNLTGEDIREGLTAVISVKLGEPQFE 379 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL ++E R+ V+S +N+ ++ WL+ HP EAK I++K + AS R AAR+AR+ TR Sbjct: 380 GQTKTKLGNTEARTFVQSIMNEKMNDWLDAHPNEAKEIIRKAIQASQARLAARKAREATR 439 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKG+L+ +PGKL DC P++ E+++VEGDSAGGSA +GR+ QAILPLRGKILNV Sbjct: 440 RKGLLESGGMPGKLRDCQSNRPEECEIYIVEGDSAGGSAVRGRNPHIQAILPLRGKILNV 499 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERAR DK LS+ E+ LITA GTGIG+D FD++KLRYHKI++M DADVDG HI TLLLT Sbjct: 500 ERARLDKALSNAEVQALITAFGTGIGED-FDMSKLRYHKIVLMADADVDGQHICTLLLTL 558 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 FR M LI +G +++ +PPLY I + + D I + L+ + D+ Sbjct: 559 LFRYMRPLIEHGHVFLAQPPLYRIKWTNAEHDYVFSDKQRDDCIREGLAAGKRIPKDNG- 617 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 I + +D + D + + + +E A + Sbjct: 618 -IQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLEDAAAA 655 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ S+LW+TT++P+ R+LL+V + DA+ AD++F+ LMG++VE RR FIQ N Sbjct: 618 IQRYKGLGEMDYSELWDTTMDPEHRTLLQVTLEDAAAADEMFAILMGEDVESRRNFIQRN 677 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 678 ARDVRFLDI 686 >gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI] gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis str. CI] Length = 640 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L + G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKIIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETTVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 159/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 248 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|317498962|ref|ZP_07957245.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893795|gb|EFV15994.1| hypothetical protein HMPREF0996_02229 [Lachnospiraceae bacterium 5_1_63FAA] Length = 637 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 247/618 (39%), Positives = 368/618 (59%), Gaps = 8/618 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N +YDA+SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L GY D I Sbjct: 1 MANKTYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGYCDEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV+LN DG+ T++DNGRGIP +++ G +A E++ T LHAGGKF YK+SGGLHGVG Sbjct: 60 TVSLNKDGTATITDNGRGIPVGINERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS+WL + +K+ G +Y+ + G + PL V G+ +DTGT V FLP +IF Sbjct: 120 ASVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F +++RL E ++LN + I +++R E + GI A+V L+ K+ L Sbjct: 180 KTYFKAAMVRNRLHETAYLNPKLTIHYVNEREGEETTVDYHEPEGICAYVKKLNEGKQML 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P+ + D I ++A ++ + + EN+L F NNI +GGTH++G ++ T + Y Sbjct: 240 H-EPVYFKRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTKFTTIMNQY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ + G D R G T+++S+K P+PRF QTK KL + + V + Sbjct: 299 AREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKAVGEIAGEE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L + +++ K ++ ++ +R A +A+ K L I S GKLA+C R + Sbjct: 359 LVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDS-NGKLANCESRKAQ 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI T+I A G Sbjct: 418 DCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKTMINAFGC 477 Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + + FDI+KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI +G +++ PP Sbjct: 478 GFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPP 537 Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + Y+ D+ +L Y + ++ + + ++ ++ + K Sbjct: 538 LYKAMPKKGEETYLFDDAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLK 597 Query: 600 LIKDFYPNHDKTFIEQAV 617 I+ + Sbjct: 598 QIEIEDARMASDVTSMLM 615 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 13/268 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + E++ + L+ Q LS + + D FI + K Sbjct: 376 CAEKSAKIRKAE-EKAKTNMLVKQKLSIDSNGKLANCESRKAQDCEIFIVEGDSAGGSAK 434 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E V +++ +N + + + S + Sbjct: 435 TARNRKTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKL 492 Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715 +I + ++G+ I + F ++ T G++ Sbjct: 493 RYHKII--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPPLYKAMPKKGEETY 550 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + + L + + ++QRYKGLGEM+A QLWETTLNP++R+L +++I DA A D Sbjct: 551 LFD-DAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLKQIEIEDARMASD 609 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803 + S LMG V PRR+FI EN+ + LDI Sbjct: 610 VTSMLMGSNVPPRRQFIYENANEAMLDI 637 >gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228] Length = 640 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 273/583 (46%), Positives = 395/583 (67%), Gaps = 4/583 (0%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y+A+ IQ+L+GL+AV+KRP MYIG T E GLHH++YEV+DN+IDE++ GY + V + Sbjct: 8 NYEAEHIQVLEGLEAVRKRPGMYIGSTSLE-GLHHLVYEVVDNSIDEAMAGYCSEVIVEI 66 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 V D+GRGIP ++H + A EV+MT LHAGGKF + YKVSGGLHGVG+SVV Sbjct: 67 KPGNIIKVQDDGRGIPVEIHPKVDKPAVEVVMTTLHAGGKFGGEGYKVSGGLHGVGISVV 126 Query: 129 NALSSWLKLRI-KREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186 NAL+ W+++ I ++G +Y+ + GI + L + G+ + TGT + F P IF D Sbjct: 127 NALTEWMEVEIAWKDGKVYKQKYERGIPQHELQLIGNCDGNCTGTTIEFKPDPLIFEEID 186 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F++ L RL+EL+FLN + I ++D R E ++ + GG+ +FV YL + KKPL+ Sbjct: 187 FDFKLLAKRLKELAFLNKGINIKIVDNRKEEVQQEDFHFDGGLISFVEYLSQSKKPLLSE 246 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI I+ + SI++A+ ++ GY+ ++ F NNI K+GGTHLSG +SA TR Y Sbjct: 247 PIYIEDEAEEGSIEVAIMYHQGYNTSLYTFANNINTKEGGTHLSGFKSATTRTFNDYARN 306 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ G D REG +++S+K+ +P+F QTK KL +SE+R V+S V+ L Sbjct: 307 KNLLKDGDDNLKGQDIREGMIAIISVKLSEPQFEGQTKTKLGNSEMRGFVDSAVSSFLKT 366 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P K I++K + A+ R AAR+ARDLTRRK L +LPGKLADCS+R +E Sbjct: 367 YLEENPKVGKAIIEKAISAAHARKAARKARDLTRRKSALTSTALPGKLADCSKRKADDTE 426 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAKQGR+RE QAILPL+GKILNVE++R +K+L++ EI LITA+GTG+G Sbjct: 427 VYIVEGDSAGGSAKQGRNREFQAILPLKGKILNVEKSRLNKILNNDEIRALITAIGTGVG 486 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 ++ FD+ +RY +IIIMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY + + Sbjct: 487 EE-FDLTNIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLLENGNIYIAQPPLYKVKK 545 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G+ +YV ++++L++ + G ++ + L + Sbjct: 546 GRREEYVYNDKALKELIEEIGKDRVSMQRYKGLGEMNPSQLWD 588 Score = 182 bits (461), Expect = 3e-43, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + I + + + D ++ V + Sbjct: 457 ILNVEKSRLNKILNNDEIRALITAIGTGVGEEFDLTNIRYDRIIIMTDADVDGAHIRTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + + I + + + + +L + I IG+ +SMQRYK Sbjct: 517 LTFFYRYMRPLLENGNIYIAQPPLYKVKKGRREEYVYNDKALKELIEEIGKDRVSMQRYK 576 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN SQLW+TT++P+ R LL+V I DA +AD+ FS LMGD+V PRREFIQ+++ Sbjct: 577 GLGEMNPSQLWDTTMDPENRILLQVDIEDAIRADETFSILMGDKVAPRREFIQKHAREVK 636 Query: 800 ALDI 803 LD+ Sbjct: 637 NLDV 640 >gi|222479425|ref|YP_002565662.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452327|gb|ACM56592.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239] Length = 645 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 288/598 (48%), Positives = 391/598 (65%), Gaps = 14/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ S Y A IQ+L+GL AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MSEQ---SEYGAGQIQVLEGLQAVRKRPAMYIGSTD-GRGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +VSD+GRGIP D+H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDDITVTIHDDNSVSVSDDGRGIPVDIHEKYDRPALEVIMTILHAGGKFDSKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGS--AGNDTGTEVTFLP 177 HGVGVSVVNALS L++ +KR+G +Y F G +TGT + F P Sbjct: 117 HGVGVSVVNALSERLEVEVKRDGGVYRHEFARGEPAEDGFERVRDLNDDEETGTYIRFWP 176 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAF 232 +IF F + TL RLREL+FLNS V ++LID+R E E T Y+GGI F Sbjct: 177 DEEIFETTAFEFSTLASRLRELAFLNSGVAVTLIDERDEEGVDDAGDEETFRYEGGIREF 236 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL+ + P+ I + D+I +++AM+ + +V F NNI ++GGTHL+G Sbjct: 237 VGYLNEARTPIHDEVIYFEDEDDDIHVEVAMQATEELQGSVHAFANNINTREGGTHLTGF 296 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 ++ALTR + Y + ++ G+D REG T+V+S+K PDP+F QTK KL +SEV Sbjct: 297 KTALTRTVNDYANTHGLVDDLEANLKGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEV 356 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R +VES +D L + EE+P A+ +V K +A+ R AA++A +LTRRK L+ +LPG Sbjct: 357 RGIVESATHDKLGTFFEENPDTARKVVHKAAEAARARKAAKKAEELTRRKSALESTALPG 416 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC RDP+++ELF+VEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ R D++L + Sbjct: 417 KLADCQTRDPEEAELFVVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKHRLDRILEND 476 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI LITA+G GIG++ FDI+ +RY+KIIIMTDADVDGAHIRTLLLT +R M L+ G Sbjct: 477 EIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDADVDGAHIRTLLLTLLYRHMKPLLEAG 535 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 ++Y +PPLY + E + + + + G ++ + L + Sbjct: 536 YVYAAQPPLYRVRYRGETYDAMTEAERDRIVAEECDGNPAQVQRFKGLGEMNPDQLWD 593 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT++P+ R L R+ I DA+ AD +F+ LMGD VEPR++FI+E Sbjct: 576 QVQRFKGLGEMNPDQLWDTTMDPENRRLKRINIDDAAAADRMFNVLMGDAVEPRKQFIKE 635 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 636 HATEAEWVDI 645 >gi|284165545|ref|YP_003403824.1| DNA gyrase B subunit [Haloterrigena turkmenica DSM 5511] gi|284015200|gb|ADB61151.1| DNA gyrase, B subunit [Haloterrigena turkmenica DSM 5511] Length = 644 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 281/597 (47%), Positives = 392/597 (65%), Gaps = 13/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q S Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MS---QESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV++N DGS +V+D+GRGIP D H E A EVI+T LHAGGKF+ KSY+VSGGL Sbjct: 57 CDDITVSINDDGSVSVADDGRGIPVDTHDEYDRPALEVILTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178 HGVGVSVVNALS L+ +KR+G+++ +F G + +TGT++ F P Sbjct: 117 HGVGVSVVNALSERLEAEVKRDGSVFRHAFEAGEPVGDMERVRDMEPDEETGTQIRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEAFV 233 + IF +F++ TL +RLREL+FLNS V I+L D+R + E T Y+GGI FV Sbjct: 177 TGIFESGEFSFSTLSNRLRELAFLNSGVHITLRDEREEATEGDDLVEETYEYQGGIREFV 236 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YL+ + + I + NI +++AM+ + ++ F NNI ++GGTHL+G + Sbjct: 237 EYLNETRSAMHDDVIYFEAEEQNIQVEVAMQATEELQGSIHAFANNINTREGGTHLTGFK 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + Y + + + ++ G+D REG T+V+S+K PDP+F QTK KL +SEVR Sbjct: 297 TALTRTVNDYAKDNDMLGDLEDNLKGEDIREGLTAVISVKHPDPQFEGQTKTKLGNSEVR 356 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +VES +++GL + EEHP A+ IV K ++A+ R AA++A +LTRRK L+ SLPGK Sbjct: 357 GIVESSMHEGLGTYFEEHPDTAQAIVTKAVEAAKARKAAQKAEELTRRKSALESTSLPGK 416 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC +DP ++ELF+ EGDSAGGSAKQ R+ + QAILP++GKILNVE+ R D++L + E Sbjct: 417 LADCQTKDPDEAELFIAEGDSAGGSAKQARNPDFQAILPIKGKILNVEKHRLDRILENDE 476 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +ITA+G GIG D FD+ +RY KII+ TDADVDGAHIRTLLLTFF+R M L+ G+ Sbjct: 477 IRNMITAIGAGIG-DEFDVEDVRYKKIIMATDADVDGAHIRTLLLTFFYRHMRPLLEGGY 535 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 +Y +PPLY I E ++ + + + G ++ L + Sbjct: 536 VYATQPPLYRIRYRGETYDAMTEAERDEIVAEKCDGNPSQVQRFKGLGEMNPQQLWD 592 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ N + I + ++ V + Sbjct: 460 ILNVEKHRLDRILENDEIRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLL 519 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F + + + + + G+ D I + G +QR Sbjct: 520 LTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTEAER-DEIVAEKCDGNPSQVQR 578 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +KGLGEMN QLW+TT++PD R L ++ I DA+ AD +FS LMGD VEPR++FI++N+ Sbjct: 579 FKGLGEMNPQQLWDTTMDPDNRILKQITIEDAAAADKMFSVLMGDAVEPRKQFIKDNAPE 638 Query: 799 SA-LDI 803 + +DI Sbjct: 639 AEWIDI 644 >gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271] gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271] Length = 640 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 286/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++ + DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLIIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 90/444 (20%), Positives = 155/444 (34%), Gaps = 47/444 (10%) Query: 393 RRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 R+ ++K + + + P E VEG S G + + N+ Sbjct: 211 EDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEG-SKDGIQVEVALQYNEG-- 267 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD-- 509 ++ G + K I+ DAD + Sbjct: 268 ----------YTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLT 317 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYL 563 G +R L + P+ G + + +++ + ++ + Sbjct: 318 GEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKI 377 Query: 564 IN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 I+ + +++ K + + L + D D I + Y + Sbjct: 378 IDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGS 437 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR 669 A + ++ + + + RL+ I E + + DI R + Sbjct: 438 AKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHK 497 Query: 670 -------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL 722 V + F + + I I L + G KI+ Sbjct: 498 VIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKE 556 Query: 723 LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F L Sbjct: 557 LEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEIL 616 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+VEPRR FIQEN+ LDI Sbjct: 617 MGDKVEPRRNFIQENAKYVKNLDI 640 >gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200] gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200] Length = 642 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 288/594 (48%), Positives = 407/594 (68%), Gaps = 9/594 (1%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVS Sbjct: 60 AGYCDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L Sbjct: 179 DPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++AL Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLAD Sbjct: 358 ESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +PPL+ + +GK +QY +++ LE L + G ++ L Sbjct: 537 AQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 190 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 249 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 250 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 296 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 297 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 356 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 357 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 414 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 474 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 475 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 534 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 535 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 593 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 642 >gi|167766557|ref|ZP_02438610.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1] gi|167711680|gb|EDS22259.1| hypothetical protein CLOSS21_01063 [Clostridium sp. SS2/1] gi|291558595|emb|CBL37395.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SSC/2] Length = 637 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 247/618 (39%), Positives = 368/618 (59%), Gaps = 8/618 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N +YDA+SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L GY D I Sbjct: 1 MANKTYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGYCDEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV+LN DG+ T++DNGRGIP +++ G +A E++ T LHAGGKF YK+SGGLHGVG Sbjct: 60 TVSLNKDGTATITDNGRGIPVGINERTGKTAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS+WL + +K+ G +Y+ + G + PL V G+ +DTGT V FLP +IF Sbjct: 120 ASVVNALSTWLTVTVKQGGKVYQQRYERGKIITPLEVIGTCRKSDTGTNVQFLPDPEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F +++RL E ++LN + I +++R E + GI A+V L+ K+ L Sbjct: 180 KTYFKAAMVRNRLHETAYLNPKLTIHYVNEREGEETTVDYHEPEGICAYVKKLNEGKQML 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P+ + D I ++A ++ + + EN+L F NNI +GGTH++G ++ T + Y Sbjct: 240 H-EPVYFKRMIDGIEAEVAFQYTEDFGENILGFCNNIYTIEGGTHITGFKTKFTTIMNQY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ + G D R G T+++S+K P+PRF QTK KL + + V + Sbjct: 299 AREIGVLKEKDSNFTGTDVRNGMTAIVSVKHPEPRFEGQTKTKLDNPDAAKAVGEIAGEE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L + +++ K ++ ++ +R A +A+ K L I S GKLA+C R + Sbjct: 359 LVLYFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNMLVKQKLSIDS-NGKLANCESRKAQ 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI T+I A G Sbjct: 418 DCEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKATMDKVLANAEIKTMINAFGC 477 Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + + FDI+KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI +G +++ PP Sbjct: 478 GFSEGYGNDFDISKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPP 537 Query: 541 LYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + Y+ D+ +L Y + ++ + + ++ ++ + K Sbjct: 538 LYKAMPQKGEETYLFDDAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLK 597 Query: 600 LIKDFYPNHDKTFIEQAV 617 I+ + Sbjct: 598 QIEIEDARMASDITSMLM 615 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 13/268 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + E++ + L+ Q LS + + D FI + K Sbjct: 376 CAEKSAKIRKAE-EKAKTNMLVKQKLSIDSNGKLANCESRKAQDCEIFIVEGDSAGGSAK 434 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E V +++ +N + + + S + Sbjct: 435 TARNRKTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKL 492 Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715 +I + ++G+ I + F ++ T G++ Sbjct: 493 RYHKII--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVFLATPPLYKAMPQKGEETY 550 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 + + L + + ++QRYKGLGEM+A QLWETTLNP++R+L +++I DA A D Sbjct: 551 LFD-DAALTRYRAEHKGNFTLQRYKGLGEMDAQQLWETTLNPESRTLKQIEIEDARMASD 609 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803 + S LMG +V PRR+FI EN+ + LDI Sbjct: 610 ITSMLMGSDVPPRRQFIYENANEAMLDI 637 >gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515] gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515] Length = 655 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 283/653 (43%), Positives = 405/653 (62%), Gaps = 19/653 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEEKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS ++SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDQIEIVLKDDGSASISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVT 174 SGGLHGVG+SVVNALS W+ + + REG+ + F GI L + GT + Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVFREGSEFTQRFERGITKGELKTQKQQNKSLRKGTIIC 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGI 229 F P + IF+ +F+Y L RLREL++LN V+I ID+ +E Y GGI Sbjct: 180 FKPDTTIFTDGIEFDYALLSSRLRELAYLNGGVKIIFIDERQKLPDGSFKEEIYLYDGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y+++ K+ + I + +DN+ ++ A++W D Y +N+L F NNI DGGTH Sbjct: 240 KEYVQYINKEKESIHSEIIYVDSQKDNVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + +K K+ +++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTFNAIAKKRGKRKEVDKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S + + L+ ++E +P +I++K + + +AA+RARDL RRK VL+ + Sbjct: 360 NTEVRGIVDSLIGESLTKYMEFNPNVFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSGSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + FD+N LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDVNSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + GF+YI PPLY + RGK+ +Y +E L+ + + G + L Sbjct: 540 VEKGFIYIACPPLYKVERGKNHKYCYNEGQLKKTIEDFGEKANYNIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + ++ + + +E I + + + + AN Sbjct: 600 WDT-----TMNPETRMMKKVEIEDALEADRIFNILMGDKVAPRREFIETHSAN 647 Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats. Identities = 76/328 (23%), Positives = 130/328 (39%), Gaps = 31/328 (9%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562 D ++ G +IR L ++P G + + GI + + Sbjct: 325 DKNLSGENIREGLTVVLSVKVPDPEFEGQTKTKLGNTEVRGIVDSLIGESLTKYMEFNPN 384 Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617 + + L + I+ F ++ DL R + ++ + + D + +I + Sbjct: 385 VFDLILEKAIQSFNAAEAAKRARDLVRRKSVLESSTLPGKLADCSSRDPSGSEIYIVEGD 444 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663 +G + ++ LN K + + D+ Sbjct: 445 SAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKIYKNTEIQSLITALGLGIKGEEFDVN 504 Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLICNGDKIK-I 716 R R V ++G+ I + F +Y+R + L + G K Sbjct: 505 SLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHKYC 564 Query: 717 TGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L TI G K ++QR+KGLGEM QLW+TT+NP+TR + +V+I DA +AD Sbjct: 565 YNEGQLKKTIEDFGEKANYNIQRFKGLGEMMPKQLWDTTMNPETRMMKKVEIEDALEADR 624 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALDI 803 +F+ LMGD+V PRREFI+ + + LDI Sbjct: 625 IFNILMGDKVAPRREFIETH--SANLDI 650 >gi|218895146|ref|YP_002443557.1| DNA gyrase, B subunit [Bacillus cereus G9842] gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222] gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842] gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222] Length = 640 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 286/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 355 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 412 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 413 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 472 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 473 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 532 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 533 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 591 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 592 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E] gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E] Length = 646 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 307/653 (47%), Positives = 417/653 (63%), Gaps = 18/653 (2%) Query: 1 MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 MS+ + + Y A I++L+GL+AV+ RP MYIG T GLHH++YEV+DN+ Sbjct: 1 MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNS 59 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ I V+LN DGSCTV DNGRGIPT +H E G A EV++T LHAGGKF + Sbjct: 60 IDEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMH-ETGKPAMEVVLTVLHAGGKFGGE 118 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 Y +SGGLHGVG+SVVNALS W K+ ++R+G +EM+F G + + G +TGT Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVTESMRTYGETS-ETGTT 177 Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 VTF P IF DF+YDTL+ R+REL+FLN ++I+L D R R Y GGI Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRVEEFHYAGGIVE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 F+ +L+ K + I +G RD I +D+AM++ GY E++ F N+I +GG HLSG Sbjct: 238 FIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQTGYSESMYTFVNDINTTEGGMHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR I Y + K+++ ++ GDD REG T V+S+K+P+P+F QTK KL + E Sbjct: 298 FRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKTKLGNLE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ VV++ V++GL +LEEHP EA++IV+K + AS R+AA+RAR+LTRRK L+++SLP Sbjct: 358 VKGVVDNIVSEGLHIYLEEHPAEARLIVEKGITASRAREAAKRARELTRRKNALEVSSLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKL+DCSE+DPKK+E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++L+S Sbjct: 418 GKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARVDRVLNS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 I +ITA GTG+ + FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M LI Sbjct: 478 DTIRMMITAFGTGV-SEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITE 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI KPPLY + +G+ Y D++ L G + L N Sbjct: 537 GHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQRYKGLGEMDPEQLWNT- 595 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + +E + + + + + N N Sbjct: 596 ----TMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNL 644 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 3/126 (2%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738 + +F +Y + + + L + G + T + + GR G ++QR Sbjct: 521 LLLTFFYRYMKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQR 580 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLW TT+NP+ R ++RV++TDA +AD LF+ LMGD+VEPRR+FI+EN++ Sbjct: 581 YKGLGEMDPEQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMN 640 Query: 799 S-ALDI 803 LDI Sbjct: 641 VTNLDI 646 >gi|313205819|ref|YP_004044996.1| DNA gyrase subunit b [Riemerella anatipestifer DSM 15868] gi|312445135|gb|ADQ81490.1| DNA gyrase subunit B [Riemerella anatipestifer DSM 15868] gi|315022785|gb|EFT35809.1| DNA gyrase subunit B [Riemerella anatipestifer RA-YM] Length = 644 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 281/595 (47%), Positives = 393/595 (66%), Gaps = 12/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N Y A SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L GY D I Sbjct: 1 MSNKQYTASSIQSLEGIEHVRLRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT++ + +V DNGRGIP D H++E SA EV+MT++ AGGKF++ SYKVSGGLHGVG Sbjct: 60 TVTIHEGNAISVKDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS+ + REG IY+ + G + G + GTEV F P IF+ Sbjct: 120 VSCVNALSTSTIATVYREGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNE 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240 +NYDTL RLREL+FLN + I++ D+R E T +GG++ FV ++D ++ Sbjct: 179 LVYNYDTLSARLRELAFLNKGINITITDERVKDEKGEFLTETFLSEGGLKEFVEFIDGNR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +M++ I ++G RD+I +++AMR+N + EN+ + NNI +GGTHL+G R ALTR + Sbjct: 239 ESIMENVIFMEGERDDIPVEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + +K+K + GDD REG T+V+S+K+ +P+F QTK KL +SEV V+ V Sbjct: 299 KKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAK IV+KV+ A+ R AA++AR++ +RK + A LPGKL+DCS + Sbjct: 359 GEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSDCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SE+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE++ K+ ++EI + TA Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKNIYTA 478 Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LG +G + +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M LI G++YI Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQGYVYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PPLY + +G Y +E+ E+ + S + G ++ L Sbjct: 539 ASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLGEMNPEQLWE 593 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLG 743 R IE+ Y+ I S L K+ + + KG+ +QRYKGLG Sbjct: 525 RYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLG 584 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 EMN QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N++ + +D Sbjct: 585 EMNPEQLWETTLNPENRILKQVNIENAGEADRIFSMLMGDEVPPRREFIEKNAVYAKID 643 >gi|288929798|ref|ZP_06423641.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288328899|gb|EFC67487.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 657 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 273/578 (47%), Positives = 375/578 (64%), Gaps = 15/578 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M +N N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 1 MVENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCSNIEVTINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALSS + ++ R+G IY+ + G P+ V G + GT F P Sbjct: 120 LHGVGVSCVNALSSRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 IF+ + +D + R+REL++LN+ V+I+L + + R T K G++ FV Y+ Sbjct: 179 SIFTTTVYRWDIIASRMRELAYLNAGVKITLTDLRPDENGKTRTETFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL+G R AL Sbjct: 239 DRHRTHLFDDVIYLKTEKQNIPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKAYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 359 SGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK SE+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ ++ K+ ++ Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 +I G LYI PPLY T ++ E I+ Sbjct: 539 IIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFID 576 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I +QRYKGLGEMN QLWETT++P R L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KSIHVQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIQNAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEQNATYANID 656 >gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805] gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805] Length = 655 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 288/661 (43%), Positives = 402/661 (60%), Gaps = 20/661 (3%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + ++Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L G Sbjct: 1 MSEAAKVQAAYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V L DGS ++DNGRGIPTD+H G SA E ++T LHAGGKF YKVSGG Sbjct: 60 HCTEIQVVLGEDGSACITDNGRGIPTDVHPRTGKSALETVLTVLHAGGKFGAGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176 LHGVGVSVVNALS W+ + ++R+ ++ F G L TGT V F Sbjct: 120 LHGVGVSVVNALSEWVDVTVRRQAQVHRQRFERGAPIGSLVSEPQPAEEEGRTGTSVRFK 179 Query: 177 PSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGI 229 P +IF+V F+Y TL RLREL++LN V+I D+R P E FY+GGI Sbjct: 180 PDIEIFTVGIVFDYATLSARLRELAYLNGGVRIVFRDERENARDAEGNPHEEIYFYEGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V+Y++ K L I + +D +S++ A++W D Y +++L F NNI DGGTH Sbjct: 240 KEYVAYMNAEKDALHPEIIYVNAEKDGVSVEAALQWCVDAYSDSILGFANNIRTVDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + ++ +K K+ ++ G++ REG T+VLS+K+P+P F QTK KL Sbjct: 300 IEGLKTVLTRTLNTFAKKRGKRKESDSNLAGENIREGLTAVLSVKVPEPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S V + LS +LE +P +I++K + A +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLVGESLSQYLEFNPGVIDMILEKAIQAFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + FD+ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKEL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ Y +E L+ L G + L Sbjct: 540 VEGGYIYIACPPLYKVERGKNHTYCYNESELQKTLEGFGEKANYNIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 +D + + +E I + + + L+ A Sbjct: 600 WET-----TMDPTTRTMKRVEIEDALEADRIFTILMGDKV-APRREFIETHSAELDMAAL 653 Query: 648 K 648 Sbjct: 654 D 654 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 11/157 (7%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYKRIFSNRIEENYL-----TILSLICNG 711 + D+ R R V ++G+ I + + + + E L + G Sbjct: 499 EDFDVKNLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQKELVEGGYIYIACPPLYKVERG 558 Query: 712 DKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 L T+ G K ++QR+KGLGEM QLWETT++P TR++ RV+I D Sbjct: 559 KNHTYCYNESELQKTLEGFGEKANYNIQRFKGLGEMMPKQLWETTMDPTTRTMKRVEIED 618 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 A +AD +F+ LMGD+V PRREFI+ +S +ALDI Sbjct: 619 ALEADRIFTILMGDKVAPRREFIETHSAELDMAALDI 655 >gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44] gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44] Length = 640 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 286/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVAIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDH-TGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLTIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEYGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILSELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 33/368 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ ++ + +++ Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 393 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678 + + RL+ I E + + DI R + V + Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 513 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L + G KI+ L+ I S + + Sbjct: 514 LLLTFFYRYMRQIIEYGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKILSELPAQPKPGI 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 573 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 632 Query: 797 LPS-ALDI 803 LDI Sbjct: 633 KYVKNLDI 640 >gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174] gi|149831923|gb|EDM87009.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174] Length = 641 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 295/586 (50%), Positives = 389/586 (66%), Gaps = 4/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +N+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ I Sbjct: 4 ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIQ 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N D S TV DNGRGIP ++ + GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 63 VTINPDNSITVVDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184 SVVNALS WL++ I REG Y+ + G PL G +TGT+VTFLP +IF Sbjct: 123 SVVNALSEWLEVTICREGKKYQQRYERGHTMYPLKEIGVCDPEETGTKVTFLPDKEIFEE 182 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YD L+ RLRE++FL ++I L D R + +E Y+GGI FV+YL+R K+ L Sbjct: 183 TIYDYDILKQRLREMAFLTKGLRIVLKDTREDQEKEKAFHYEGGIREFVTYLNRSKEALY 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +G +D + +++AM+ ND Y EN F NNI +GGTH+ G R+ALT+ Y Sbjct: 243 PEVIYCEGEKDGVMVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K + ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V+ V+ L Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDFVVSKQL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE++P AK V+K + A R+AAR+ARDLTRRK LD SLPGKLADCS+++P+ Sbjct: 363 EIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCSDKNPEN 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK R+R QAILPLRGKILNVE+AR D++ S+ EI +ITA GTG Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 483 IHED-FDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y D+ L L G + L Sbjct: 542 EKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWE 587 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 481 TGIHEDFDITKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + IGR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 541 VEKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +++ + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 601 TMDESATSEIDLTFTTLMGDKVEPRREFIEENARFVENLDI 641 >gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 645 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 286/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 9 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 68 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 128 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 187 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 245 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 246 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 306 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 366 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 426 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 486 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 545 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 593 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 156/469 (33%), Gaps = 51/469 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 193 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 252 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 253 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 299 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 300 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 359 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 360 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 417 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 418 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 477 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 478 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 537 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 538 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 596 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 597 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 645 >gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 641 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 299/586 (51%), Positives = 394/586 (67%), Gaps = 4/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +N+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ I Sbjct: 4 ENTEYGADQIQILEGLEAVRKRPGMYIGSTS-GRGLHHLVYEIVDNAVDEALAGFCTEIQ 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V +N D S TV DNGRGIP ++ + GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 63 VVINPDNSITVVDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184 SVVNALS+WL++RI EG IY+ + G PL V G + TGT V FLP +IF Sbjct: 123 SVVNALSTWLEVRIYHEGKIYQQRYERGKTMYPLKVVGDCQPDKTGTTVVFLPDKEIFEE 182 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YD L+ RLRE++FL ++ISL D R RE Y+GGI FVSYL+R K+ L Sbjct: 183 TVYDYDILKQRLREMAFLTKGLKISLKDTREGMEREKVFHYEGGIREFVSYLNRSKEALY 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +G ++ +S+++AM+ ND Y EN F NNI +GGTH+ G R+ALT+ Y Sbjct: 243 PEIIYCEGQQNGVSVEVAMQHNDSYTENCYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K + ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V+S V+ L Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIENPQFEGQTKQKLGNSEARGAVDSVVSKQL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE++P AK V+K + A R+AAR+ARDLTRRK LD SLPGKLADCS+++P+ Sbjct: 363 EIFLEQNPTVAKTTVEKSVLAQRAREAARKARDLTRRKSALDNMSLPGKLADCSDKNPEN 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK R+R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTG Sbjct: 423 CEIYIVEGDSAGGSAKTARNRVTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 483 IHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y D++ L L G + + L Sbjct: 542 EKNKKVWYAYDDDELNQILTEIGRDGNNKIQRYKGLGEMDADQLWE 587 Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 481 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + IGR G + +QRYKGLGEM+A QLWETT++P+ R LL+V Sbjct: 541 VEKNKKVWYAYDDDELNQILTEIGRDGNNKIQRYKGLGEMDADQLWETTMDPEKRILLKV 600 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +A+ + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 601 TMDEAATSEIDLTFTTLMGDKVEPRREFIEENARFVKNLDI 641 >gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23] gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23] Length = 658 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 265/581 (45%), Positives = 377/581 (64%), Gaps = 17/581 (2%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M++ Q +Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ Sbjct: 1 MTEEQLNQEQNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I VT+N D S TV DNGRGIP D H++ SA EV+MT LHAGGKF++ SYKVSG Sbjct: 60 GYCTHIEVTINEDNSITVQDNGRGIPVDEHEKMHKSALEVVMTVLHAGGKFDKGSYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVS VNALS+ + ++ R G+IY+ + G + + G + TGT F P Sbjct: 120 GLHGVGVSCVNALSTHMMSQVFRNGHIYQQEYEKGKPLYDVKIVGDT-DKTGTRQQFWPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVS 234 IF+ ++ YD + R+REL++LN+ + I+L D R E + K G++ FV Sbjct: 179 GSIFTTTEYKYDIIAKRMRELAYLNAGITITLTDLRPDEEGNLRQPEVFHAKEGLKEFVR 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y+DRH+ ++ PI ++ +D + I++A+ +N Y EN+ + NNI +GGTHL+G R Sbjct: 239 YVDRHRTSIIGDPICLKTEKDGVPIEVALLYNSDYSENIHSYVNNINTIEGGTHLTGFRI 298 Query: 295 ALTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 AL R + Y ++ +K K V DD REG T+++S+K+ +P+F QTK KL +S Sbjct: 299 ALARTLKKYADEDDQLRKQIEKAKIEVAQDDFREGLTAIISVKVAEPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EV V+ V + ++ +LEE+P EA I +KV+ A+ R AAR+AR+ +RK + L Sbjct: 359 EVNGAVQKAVGEAMTNYLEENPKEAHTICEKVILAATARIAARKARESVQRKNPMTGGGL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS +DPK+ E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ ++ Sbjct: 419 PGKLADCSNKDPKECEIFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKVQWHRVFE 478 Query: 471 SQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 ++ + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R M Sbjct: 479 AESVMNIIQSIGVRFGVDGEDSKDANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFM 538 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 P +I G LYI PPLY T K+ +Y E+ + ++ Sbjct: 539 PQVIQGGHLYIATPPLYKCTYKKTSEYCYTEQQRQAFIDKY 579 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 58/71 (81%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG+ QRYKGLGEMN QLWETT+NP+ R L +V I +A++AD++FS LMGD+VEPRREF Sbjct: 587 KGLHTQRYKGLGEMNPEQLWETTMNPENRLLKQVTIENAAEADEIFSMLMGDDVEPRREF 646 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 647 IEKNATYANID 657 >gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831] gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831] Length = 641 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 300/592 (50%), Positives = 415/592 (70%), Gaps = 8/592 (1%) Query: 1 MSDN-IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M D +N Y AD IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G Sbjct: 3 MEDKITENQEYGADQIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAG 61 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I V + D S TV DNGRGIP D+ ++ G A EVIMT LHAGGKF YKVSGG Sbjct: 62 YCDHIQVVVEEDNSITVKDNGRGIPVDIQQKTGRPALEVIMTVLHAGGKFGGGGYKVSGG 121 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALSS L++ + R+G ++ +SF G+ D + V G + TGT F P + Sbjct: 122 LHGVGASVVNALSSELEVYVHRDGKVHFLSFKKGVPDGEIKVIGDT-DITGTVTHFRPDT 180 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ +N+DTL+ RLREL+FLN ++IS+ DKR+ + ++T Y+GGI ++V ++++ Sbjct: 181 EIFTETTEYNFDTLEQRLRELAFLNKGLKISIEDKRT-DREQVTYHYEGGISSYVEFINK 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+ L P +G IS+++A+++NDG+ N+ F NNI +GG+H G RS LTR Sbjct: 240 NKEVLH-EPFFAEGEDQGISVEVAIQYNDGFASNLYSFANNIHTYEGGSHEVGFRSGLTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y +K+ K ++ GDD REG T+++SIK PDP+F QTK KL +SEVR++ + Sbjct: 299 IINDYAKKNGLIKDGDSNLSGDDVREGMTTIVSIKHPDPQFEGQTKTKLGNSEVRAITDG 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ S +L E+P AKIIV+K L AS R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 359 VFSEAFSKFLYENPSTAKIIVEKGLMASRARLAAKKARELTRRKSNLEISNLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RD SEL++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++LS+ E+ +I Sbjct: 419 SRDAAISELYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNNEVRAMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG+G+G++ FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TALGSGVGEE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRPLIEQGYIYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY + +GK++ Y +++ L+ L + + G ++ + L + Sbjct: 538 PPLYQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKGLGEMNADQLWD 589 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 21/183 (11%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687 RL+ I +E G DI R + V ++G+ I + F Sbjct: 462 KARLDRILSNNEVRAMITALGSGVGEEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521 Query: 688 KYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKG 741 +Y R IE+ Y+ L + G + LD I + K ++QRYKG Sbjct: 522 RYMRPL---IEQGYIYIAQPPLYQVKQGKTVNYAYNDKELDRILNEIPKAPKPNIQRYKG 578 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-A 800 LGEMNA QLW+TT++PDTR+LL+V+++DA AD +F LMGD+VEPRR FI+EN+ Sbjct: 579 LGEMNADQLWDTTMDPDTRTLLQVELSDAIDADQVFDMLMGDKVEPRRIFIEENAQYVKN 638 Query: 801 LDI 803 LDI Sbjct: 639 LDI 641 >gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7] Length = 637 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 301/640 (47%), Positives = 430/640 (67%), Gaps = 6/640 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ + YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSEQ-KKQVYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV+D+GRG+P +H + EVIMT LHAGGKF YKVSGGL Sbjct: 59 CKNIEVFIHKDNSITVTDDGRGMPVGMHPKMKKPTVEVIMTVLHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ +KREG+I++ +F G + L + G + GT++ F P ++ Sbjct: 119 HGVGASVVNALSELCEVEVKREGHIWKQAFERGKVKTGLEIVGDSE-GHGTKIHFKPDAE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF D++YDTL RLREL+FLN +++I+L D+R + Y+GGI++FVSYL+R+K Sbjct: 178 IFEEVDYDYDTLAQRLRELAFLNRNIRINLSDERIDKL--EVFHYEGGIKSFVSYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + + PI ++G++ + S+++++++NDGY EN+ F NNI +GGTHL+G +SALTR Sbjct: 236 QVINKEPIYVEGNKQDCSVEISIQYNDGYTENIFSFANNIDTVEGGTHLAGFKSALTRAF 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K++ +++ G+D REG T+V+S+K+ DP+F QTK KL +SEVR +V+ V Sbjct: 296 NDYAKKFGILKENDKNLSGEDIREGLTAVISVKLIDPQFEGQTKTKLGNSEVRGIVDGIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +G+S++L+E+P AK I+ K L AS R+AAR+AR+LTRRK +L+ SLPGKLADCS + Sbjct: 356 GEGVSSFLQENPQVAKSILDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPK+ E++LVEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ R DK+L +EI +ITA Sbjct: 416 DPKECEIYLVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG+D FD+ K+RY +IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PP Sbjct: 476 FGGGIGKD-FDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + +GK Y ++ LE L + + KG+ + + + +++ Sbjct: 535 LYKVAKGKKEHYAYSDKELEKLLEDVGGKDNNTNIQRYKGLGEMDATQLWDTTMNPDERV 594 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + E I E +E A K+ N Sbjct: 595 LLQVTVEDAMAADEIFTILMGDKVEPRREFIQENAKKVIN 634 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 K + D ++ V + F + + + + + + Sbjct: 482 KDFDVEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMKELVDQGHVYIAQPPLYKVAKG 541 Query: 711 GDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 + L + +G K ++QRYKGLGEM+A+QLW+TT+NPD R LL+V + Sbjct: 542 KKEHYAYSDKELEKLLEDVGGKDNNTNIQRYKGLGEMDATQLWDTTMNPDERVLLQVTVE 601 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 DA AD++F+ LMGD+VEPRREFIQEN+ LDI Sbjct: 602 DAMAADEIFTILMGDKVEPRREFIQENAKKVINLDI 637 >gi|300781943|ref|YP_003762234.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] gi|299791457|gb|ADJ41832.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32] Length = 655 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 275/659 (41%), Positives = 388/659 (58%), Gaps = 20/659 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N Y+A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+ Sbjct: 1 MTEN--KHEYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V D+GRGIP D+H +E EV++T LHAGGKF+ SY VSGGL Sbjct: 58 ATKVEVTLLADGGVRVVDDGRGIPVDMHPKEQKPTLEVVLTVLHAGGKFDSDSYAVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L +K G + + + I PL G A +TGT +TF D Sbjct: 118 HGVGVSVVNALSKKLLAEVKYGGRSWRQEYTDQIP-GPLEDLGPAS-ETGTTITFWADGD 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-------------ITMFYKG 227 IF +N++T+ RL+E++FLN + +SL D+R + T Y G Sbjct: 176 IFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEEAEADAEGKVARVKEKTYCYPG 235 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 G+E FV +++ K P+ S I + + +++AM+WN+G+ +V F N I +GGT Sbjct: 236 GLEDFVKHINGSKDPIHSSVISFEAKGTGLEVEVAMQWNNGFTPSVYTFANTINTHEGGT 295 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALTR + +Y K+ ++ GDD REG +++SIK+ +P+F QTK KL Sbjct: 296 HEEGFRAALTRVVNTYARDKKLLKEKDTNLTGDDVREGLAAIVSIKLSEPQFEGQTKTKL 355 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 +SE ++ V+ N+ L+ W E +P EAK I+ K + ++ R AAR+ARDL RRKG LDI Sbjct: 356 GNSEAKTFVQQTSNEWLADWFERNPTEAKTIINKSISSAQARMAARKARDLVRRKGALDI 415 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 LPGKL DC P++ EL++VEGDSAGGSAK+GR QAILP+RGKI+NVE+AR D+ Sbjct: 416 GGLPGKLKDCRSTKPEECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDR 475 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L + E+ +LITALGTGI D FD+ KLRYHKI++M DADVDG HI TLLLT FR M Sbjct: 476 VLKNTEVQSLITALGTGI-HDEFDLEKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534 Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI +G +++ +PPLY I ++ +Y + + + + + D+ Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRAEPEYAYSDRERDAVIQAGVEAGKRLPKDDAIQRYKGLG 594 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + QA D E S ++ A + F+ Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRNAKDVRFL 653 Score = 151 bits (381), Expect = 6e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA +LWETT++P R L +V + DA+QAD+LFS LMG++VE RR FI N Sbjct: 587 IQRYKGLGEMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRN 646 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 647 AKDVRFLDV 655 >gi|260437351|ref|ZP_05791167.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] gi|292810263|gb|EFF69468.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] Length = 641 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 260/594 (43%), Positives = 365/594 (61%), Gaps = 9/594 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+ YDA SI IL+GL+AV+KRP MYIG GL+H+IYE+ DN++DE L GY Sbjct: 1 MATKV-NNVYDASSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIADNSVDEHLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTLN DG+ T++DNGRGIPT +H + GI A EV+ T LHAGGKF YK+SGGL Sbjct: 59 CDTIYVTLNNDGTATITDNGRGIPTGIHPKAGIPAVEVVFTVLHAGGKFGDGGYKISGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS WL++RIK+ G +YE + G L G+ NDTGT VTFLP + Sbjct: 119 HGVGASVVNALSEWLEVRIKQGGIVYEQRYERGKAVYKLRECGTCRKNDTGTSVTFLPDN 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F +++++RL E ++LN + I + R E +++T + GI A+V L+ + Sbjct: 179 TIFEKTEFKAESIENRLHETAYLNPGLTIVFENARKGEEKKVTFHEEEGITAYVKALNEN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + +GSRD I ++ A ++ D + E +L F NNI +GGTHL+G ++ T Sbjct: 239 KEAVH-DVAYYKGSRDGIEVECAFQYVDEFQEQILGFCNNIYTAEGGTHLTGFKTQFTTV 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y + K+ + G D R G T+++++K P+PRF QTK KL + + VV Sbjct: 298 INKYARELGILKEKDVNFTGSDVRNGMTAIVAVKHPEPRFEGQTKTKLDNQDAGKVVADI 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 L + + + K ++ A+ +R +A+ K GKLA+C Sbjct: 358 TAAELVRFFDRNLETLKSVIACAEKAAKIRKQEEKAKTNLLTKQKF-SCDTNGKLANCES 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+P++ E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI T+IT Sbjct: 417 RNPEECEIFIVEGDSAGGSAKTARNRKTQAILPIRGKILNVEKASMDKVLANAEIKTMIT 476 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI+KLRY+KII MTDADVDGAHI TLLLTFF+R MP LI G +Y+ Sbjct: 477 AFGCGFSEGYGNDFDISKLRYNKIIFMTDADVDGAHIDTLLLTFFYRFMPDLIREGHIYL 536 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + +Y+ D+++LE Y S G + + L Sbjct: 537 ATPPLYKVVPKKGQGRYLYDDKALEKYRKEHEGSSFTLQRYKGLGEMDADQLWE 590 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR L +++I DA A D+ S LMG +V PRREFI Sbjct: 573 TLQRYKGLGEMDADQLWETTLNPETRILKQIEIEDAKMASDITSMLMGTDVPPRREFIHT 632 Query: 795 NSLPSALDI 803 ++ + LDI Sbjct: 633 HAHDAELDI 641 >gi|325954875|ref|YP_004238535.1| DNA gyrase subunit beta [Weeksella virosa DSM 16922] gi|323437493|gb|ADX67957.1| DNA gyrase, B subunit [Weeksella virosa DSM 16922] Length = 671 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 283/596 (47%), Positives = 406/596 (68%), Gaps = 12/596 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++ ++Y AD+IQ ++G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L G+ D Sbjct: 27 SMSQNTYTADNIQAIEGMEHVRLRPSMYIGDV-GTRGLHHLVYEVVDNSIDEALAGFCDT 85 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I+V + S +VSDNGRGIP D+HK+EG SA EV+MT++ AGGKF++ +YKVSGGLHGV Sbjct: 86 ISVKILEGNSISVSDNGRGIPVDIHKKEGKSALEVVMTKIGAGGKFDKDTYKVSGGLHGV 145 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVS VNALS+ L + + G Y + G + G + +GT VTF P + IF+ Sbjct: 146 GVSCVNALSNHLTAEVFKNGKHYIQEYEKGKPLYDVKQVGDT-DKSGTTVTFTPDNTIFN 204 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRH 239 ++N++TL +RLRELS+LN + I+L D+R EP GG++ FV ++D + Sbjct: 205 ELEYNFNTLANRLRELSYLNKGITITLTDERVKDEKGEPLLEVFHSDGGLKEFVEFIDGN 264 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ +M + I ++G RD I +++AMR+N Y+EN+ + NNI +GGTHL+G R ALTR Sbjct: 265 REAIMDNVICMEGERDGIPVEVAMRYNTSYNENLHSYVNNINTHEGGTHLAGFRRALTRT 324 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y +++F K+K ++GDD REG T+++S+K+ +P+F QTK KL +SEV V+ Sbjct: 325 LKKYADENFNLTKEKVEIVGDDFREGLTAIISVKVMEPQFEGQTKTKLGNSEVSGAVDKI 384 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L+ +LEE+P+EAKIIV KV+ A+ R AA++AR++ +RK + + LPGKLADCS Sbjct: 385 VSEMLTNFLEENPIEAKIIVDKVILAAKARQAAKKAREMVQRKNPMGGSGLPGKLADCSS 444 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+P++SE+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+L ++EI + T Sbjct: 445 RNPEESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKAMAHKVLDNEEIKNIYT 504 Query: 480 ALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ALG IG + +I+KLRYHK++IMTDADVDG+HI TL+LTFFFR M LI NG +Y Sbjct: 505 ALGVSIGTEEDSKALNISKLRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENGHIY 564 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 I PPLY + +G +Y EE E + + + G ++ L + Sbjct: 565 IATPPLYLVKKGNKAEYAWGEEEREALVEKLAPDGKGVTIQRYKGLGEMNAEQLWD 620 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 12/209 (5%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A+ V + E + I +L + E+ K+ + S Sbjct: 470 RHFQAILPLRGKILNVEKAMAHKVLDNEEIKNIYTALGVSIG------TEEDSKALNISK 523 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 +V V + F F + I + I L L+ G+K + Sbjct: 524 LRYHKVVIMTDADVDGSHIATLILTFFFRYMKELIENGHIY-IATPPLYLVKKGNKAEYA 582 Query: 718 GPCS----LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L++ + G KG+++QRYKGLGEMNA QLW+TTLNP R++ +V I +A++A Sbjct: 583 WGEEEREALVEKLAPDG-KGVTIQRYKGLGEMNAEQLWDTTLNPQNRTMRKVTIENAAEA 641 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802 D +FS LMGD+V+PRREFI++N+ + +D Sbjct: 642 DRVFSMLMGDDVQPRREFIEKNAEYAKID 670 >gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L] gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42] gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342] gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1] gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B) [Bacillus cereus E33L] gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342] gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42] gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1] Length = 640 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 287/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 177 bits (450), Expect = 6e-42, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +I+ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3] gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3] Length = 640 Score = 592 bits (1526), Expect = e-166, Method: Composition-based stats. Identities = 286/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMEENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 QETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 89/474 (18%), Positives = 159/474 (33%), Gaps = 47/474 (9%) Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERD 421 + E A + + ++ R+ ++K + + + Sbjct: 181 FQETIVYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQ 240 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P E VEG S G + + N+ ++ Sbjct: 241 PIHEEPVYVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTH 287 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI--- 536 G + K I+ DAD + G +R L + P+ G Sbjct: 288 EVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLG 347 Query: 537 ---IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKN 585 + + +++ + ++ +I+ + +++ K + + Sbjct: 348 NSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVS 407 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 L + D D I + Y + A + ++ + + + RL+ I Sbjct: 408 SLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKI 467 Query: 646 AEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRI 692 E + ++ V + F + + I Sbjct: 468 LSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQII 527 Query: 693 FSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQL 750 I L + G KI+ L+ I + + +QRYKGLGEMN +QL Sbjct: 528 ECGYIY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQL 586 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 WETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 587 WETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|288939795|ref|YP_003442035.1| XRE family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895167|gb|ADC61003.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 1371 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 307/520 (59%), Positives = 396/520 (76%), Gaps = 10/520 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YD+ +I++L+GLDAV+KRP MYIGDTD +GLHHM++EV+DN+IDE+L GY ++VTL Sbjct: 2 TYDSTNIKVLRGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSTVSVTL 61 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + DGS +V D+GRGIP D+H EE SAAEVI+T LHAGGKF+ SYKVSGGLHGVGVSVV Sbjct: 62 HADGSVSVVDDGRGIPVDIHAEENRSAAEVILTVLHAGGKFDDNSYKVSGGLHGVGVSVV 121 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS L LRI+R G+++E + G PL V G +TGTE+ F PS +IFS DF+ Sbjct: 122 NALSERLYLRIRRGGHLHEQEYRLGEPVYPLRVIGDTE-ETGTEIRFYPSGEIFSNLDFH 180 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 YD L RLRELSFLNS V+I+L D+ S R Y+GGI AFV L+++K+P+ + + Sbjct: 181 YDILAKRLRELSFLNSGVRIALSDEASG--RHDVFEYEGGIRAFVENLNQNKEPIHPTVV 238 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 R +I ++LA++WN+ Y E + C+TN IPQ+DGGTHL+GLR+ALTR + Y+E+ Sbjct: 239 YFSTERQDIGVELAIQWNNSYQETIFCYTNTIPQRDGGTHLAGLRAALTRTLNGYIEREG 298 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K K IGDD REG T+VLS+K+PDP+FSSQTK+KLVSSEV++VVES V + L +L Sbjct: 299 LDKNQKIRPIGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKAVVESLVVEHLGTFL 358 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EE P EAK+I K+L+A+ R+AAR+AR++TRRKGVLDIA LPGKLADC E+DP KSEL+ Sbjct: 359 EEQPNEAKVIAGKMLEAARAREAARKAREMTRRKGVLDIAGLPGKLADCQEKDPAKSELY 418 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 LVEGDSAGGSAKQGR R QAILPL+GKILNVE+ARFDKML+S E+GTLITALG GIG++ Sbjct: 419 LVEGDSAGGSAKQGRDRAFQAILPLKGKILNVEKARFDKMLASAEVGTLITALGCGIGRE 478 Query: 489 SFDINKLRYHKIIIMT-DADVD------GAHIRTLLLTFF 521 ++ + LRYH++IIM+ DA+ G H+R + F Sbjct: 479 EYNPDNLRYHRVIIMSVDAEEHVFVRDPGGHVRMTRIGDF 518 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 161/309 (52%), Gaps = 10/309 (3%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563 TDADVDGAHIRTLLLTFF+RQMP L+ G +YI +PPLY + +GK Y+ DE +L + Sbjct: 1064 TDADVDGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKLKKGKQEDYLLDETALNGAM 1123 Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623 + +L ++ L D +++ +D TF+++ V + + Sbjct: 1124 LQSALDGAELHVNAEAPALANTALEALAKDYQVTVNIVRRLASRYDATFLDELVRTPPVD 1183 Query: 624 CE--SDQEINVSLASKLANRLNFIAEKSEK-----SWHGSINNSDILVKRIARGVQEQFV 676 SD E + RLN S + S + + + R+ G+ E + Sbjct: 1184 AALLSDGERLADWCRIMEARLNAAESVSLRYVLRLSEPTEGQSRGLELIRLIHGIPETRI 1243 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGIS 735 + + R F ++ + + + + G+KIK I + + + ++G S Sbjct: 1244 IPLDFFNTTDYARLREFGLKL-DGLIQPGAFVRRGEKIKEIGDLGEAIRWLLAEAQRGYS 1302 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QLWETT+NP+ R LL+V I DA AD +F+ LMGD+VEPRREFI+ N Sbjct: 1303 IQRYKGLGEMNPEQLWETTMNPEMRRLLKVTIEDAVAADQIFTTLMGDQVEPRREFIERN 1362 Query: 796 SLPS-ALDI 803 +L LDI Sbjct: 1363 ALNVGNLDI 1371 >gi|72388581|gb|AAZ67934.1| DNA gyrase subunit B [Psychrobacter urativorans] Length = 741 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 328/712 (46%), Positives = 450/712 (63%), Gaps = 34/712 (4%) Query: 48 VLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGG 107 V+DN+IDE+L Y D I + ++ D S +VSDNGRG+P D+H EEG+SAA+VIMT LHAGG Sbjct: 1 VVDNSIDEALALYCDQIDIIIHEDLSVSVSDNGRGVPVDIHPEEGVSAAQVIMTVLHAGG 60 Query: 108 KFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN 167 KF+ SYKVSGGLHGVGVSVVNALS L++ I REG Y ++ +G+ D + A + Sbjct: 61 KFDDNSYKVSGGLHGVGVSVVNALSKTLEMNIWREGYHYNQTYTDGVPDGDIQQ-MEATD 119 Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 TGT++ F PS+D+F+ F YD L RLRELSFLNS V+I L D+R + E +KG Sbjct: 120 RTGTQIRFYPSTDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKG 177 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 G+ FVSY++ K + + D IS+++A++W D Y+E VLCFTNNIPQ+DGGT Sbjct: 178 GLSEFVSYINAGKDNVNEIFHFNSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGT 237 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 HLSG RSALTR + +Y+++ KK+K GDD REG T+++S+K+PDP+FSSQTK+KL Sbjct: 238 HLSGFRSALTRCLNTYMDRENLFKKEKVVATGDDAREGLTAIVSVKVPDPKFSSQTKDKL 297 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 VSSEV+S VES ++D + +L+E+P +K I K++DA+ RDAAR+AR++TRRK LDI Sbjct: 298 VSSEVKSAVESAMHDKFNDYLQENPGASKAIAGKIIDAARARDAARKAREMTRRKTTLDI 357 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 A LPGKLADC E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDK Sbjct: 358 AGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDK 417 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 MLSS E+G LITALG GIG D ++ +K RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P Sbjct: 418 MLSSAEVGNLITALGCGIGPDEYNPDKARYHKIIIMTDADVDGSHIRTLLLTFFFRQTPE 477 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI G++YI +PPLY + +G+ Y+KD+E+L+ YL++ ++ I+ L Sbjct: 478 LIERGYIYIAQPPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTRLHISLDAPAITGQAL 537 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++D + + + ++ + + + ++ S + L + Sbjct: 538 ETLLNDYNQTQLIKARLQIRYPAVLLDALTHTPKLSTDMTYDL--SAMQAWKDSLQLQLD 595 Query: 648 KSEKSWHGSINNSDIL--VKRIARGVQEQFV-------------------LEGSSIFSFG 686 + + I DI V V + + G SI S Sbjct: 596 RFGSDLNPEIELVDIHAPVSATMDAVTADLLGMKPKAPAQPALIGDSEASIVGESISSTE 655 Query: 687 SK--------YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 + ++ +++ NYL S I +G+ K+ S +T+ Sbjct: 656 ALSKKPQWLPRITVYVHQLAHNYLLDASFINSGEYSKLLRLSSEWNTLLEES 707 >gi|210634747|ref|ZP_03298275.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279] gi|210158687|gb|EEA89658.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM 13279] Length = 674 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 280/678 (41%), Positives = 398/678 (58%), Gaps = 21/678 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + Y + I++L+GL+AV+ RP MYIG T +GLHH+++E++DN++DE++ G+ Sbjct: 1 MAN---ENEYGGNEIKVLEGLEAVRVRPGMYIGSTSS-TGLHHLVWEIVDNSVDEAMAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV DNGRGIP D H + I EV+MT LHAGGKF+ +YKVSGGL Sbjct: 57 CTKIEVTVHPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + ++++R+G+IYEM F G + G++ T TF P + Sbjct: 117 HGVGVSVVNALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTG-TTTTFWPDEE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF ++YD L+ RL++ +FLN +++I L D+R+ +P Y GGI FV +L+ K Sbjct: 176 IFETTVYDYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGK 235 Query: 241 KPL--MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 ++ PI + G +++A++WN Y ENV+ F N+I +GG H+ G Sbjct: 236 TVPEGLKHPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENVVSFANDIRTIEGGMHMEG 295 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALT I Y K+ K+ + ++ GDD REG T+V+S+K+ DP+F QTK KL SS Sbjct: 296 FRAALTSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSF 355 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++ V++GL+ +LEEHP +A+ I+KK AS R+AAR+AR+ TRRK +L+ ASLP Sbjct: 356 MRTLTRKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLP 415 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS RD + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER + SS Sbjct: 416 GKLADCSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSS 475 Query: 472 QEIGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + I +LITA+G G+ FDI K RYHKIIIMTDADVDGAHIR LLLTFF++ M Sbjct: 476 ETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMR 535 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G++Y+ PP++GI + YV + L + + Sbjct: 536 PLIDAGYVYVACPPIFGIKVRNKIHYVY--PNGRQAEDEILRDSIKALGLNPDEADDEQA 593 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 D + + I ++ + A R + Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGS 653 Query: 647 EKSEKSWHGSINNSDILV 664 E + + + D Sbjct: 654 EVGYRREYIEKHAHDARF 671 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 RKG ++QRYKGLGEM+ QL TT++P TR L RV I DA AD LMG EV RRE Sbjct: 601 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAVVADRAVRELMGSEVGYRRE 660 Query: 791 FIQENSLPSA-LD 802 +I++++ + LD Sbjct: 661 YIEKHAHDARFLD 673 >gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407] gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407] gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 642 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 287/594 (48%), Positives = 407/594 (68%), Gaps = 9/594 (1%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVS Sbjct: 60 AGYCDEINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L Sbjct: 179 DPEIFKETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++AL Sbjct: 238 NRSKQPIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLAD Sbjct: 358 ESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI Sbjct: 478 IITAIGTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +PPL+ + +GK +QY +++ LE L + G ++ L Sbjct: 537 AQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 190 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 249 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 250 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 296 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 297 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 356 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 357 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 416 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 417 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 476 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 477 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 535 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 536 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 595 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 596 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 642 >gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803] gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803] Length = 640 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442] gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442] Length = 640 Score = 591 bits (1525), Expect = e-166, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 406/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++ + DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 588 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 560 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 561 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FIQEN+ LDI Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640 >gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12] gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12] Length = 635 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 296/642 (46%), Positives = 410/642 (63%), Gaps = 14/642 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y ADSIQIL+G +AV++RP MYIGDT G GLHH+I+E++DN+IDE + GY D I Sbjct: 4 TKKDKYTADSIQILEGTEAVRRRPGMYIGDT-GVRGLHHLIFELVDNSIDEVMAGYCDYI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L DG+ V+DNGRGIP D+H + A EV++T LHAGGKF+ YK+SGGLHGVG Sbjct: 63 LVELKKDGAVVVADNGRGIPVDIHPQAKKPALEVVLTTLHAGGKFSNSIYKISGGLHGVG 122 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALSS L++ + R+G I+ + G PL V G + TGT++ F P +IF Sbjct: 123 LSVVNALSSKLEVEVMRDGKIFYQVYERGKPITPLTVKGET-DKTGTKIKFYPDPEIFET 181 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+YD + +RLREL+FLN V I L D+R+ Y+GG+ F+ YL + K+ L Sbjct: 182 TKFDYDIVANRLRELAFLNPKVTIELRDERTGRSN--IFKYEGGLLEFIEYLSKGKEVLH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 PI ++ N+ +++ M++N GY E +L + NNI +GGTH++G R+ALTR + ++ Sbjct: 240 -EPIYMEREEGNLILEIVMQYNSGYDELILSYVNNIHTIEGGTHVTGFRTALTRVVNNFA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+++ S+ GDD REG T+++S+K+PDP+F QTK KL ++EVR VE V + L Sbjct: 299 RSWGLWKENE-SLSGDDVREGLTAIVSVKVPDPQFEGQTKTKLGNTEVRKFVEKVVEEEL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + ++P K+I+ K+++A R AAR+AR+L RRK +L+ LPGKLADCSE+DP K Sbjct: 358 TEYFSKNPDTGKLIITKIIEAYRARQAARKARELVRRKSLLESTLLPGKLADCSEKDPAK 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF-DKMLSSQEIGTLITALGT 483 ELF+VEG+SAGGSAKQ R R QAILPLRGKILNVE+A+ K+LSS+EI +I +LGT Sbjct: 418 CELFIVEGESAGGSAKQARDRRYQAILPLRGKILNVEKAQHLTKILSSEEIKAIIASLGT 477 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FD++KLRYHKIIIMTDADVDGAHIRTLLLTFF+R LI G++YI +PPLY Sbjct: 478 GIG-QDFDLSKLRYHKIIIMTDADVDGAHIRTLLLTFFYRHFRPLIEGGYIYIAQPPLYL 536 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK +Y EE E+ L E + G + LR +D + Sbjct: 537 LRKGKEERYAYSEEEKEEILKEWGYPENVYIQRYKGLGEMDPEQLRET-----TMDPQKR 591 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E + + + +E + K N Sbjct: 592 ILLQVTIEDALEAERLFSILMGNNVEERRNFIEQKAKFVRNL 633 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +QRYKGLGEM+ QL ETT++P R LL+V I DA +A+ LFS LMG+ VE RR FI+ Sbjct: 565 VYIQRYKGLGEMDPEQLRETTMDPQKRILLQVTIEDALEAERLFSILMGNNVEERRNFIE 624 Query: 794 ENSLPS-ALDI 803 + + LDI Sbjct: 625 QKAKFVRNLDI 635 >gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29] gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3] gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3] gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29] gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 640 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|260910948|ref|ZP_05917589.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral taxon 472 str. F0295] gi|260634939|gb|EEX52988.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp. oral taxon 472 str. F0295] Length = 657 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 275/608 (45%), Positives = 387/608 (63%), Gaps = 21/608 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M +N N ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ G Sbjct: 1 MVENQNNENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV D+GRGIP D H++ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCSSIEVTINEDNSITVQDDGRGIPVDEHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS+ + ++ R+G IY+ + G P+ V G + GT F P Sbjct: 120 LHGVGVSCVNALSTRMLSQVFRDGKIYQQEYETGKPLYPVKVVGET-DKRGTRQQFWPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI---DKRSPEPREITMFYKGGIEAFVSYL 236 +IF+ + +D + R+REL++LN+ V+I+L + + R T K G++ FV Y+ Sbjct: 179 NIFTTTVYRWDIIASRMRELAYLNAGVKITLTDLRPDENGKTRTETFHAKDGLKEFVRYV 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 DRH+ L I ++ + NI I++A+ +N Y EN+ + NNI +GGTHL+G R AL Sbjct: 239 DRHRSHLFDDVIYLKTEKQNIPIEVAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMAL 298 Query: 297 TRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 TR + +Y + S +K K + G+D REG T+V+SIK+ +P+F QTK KL +SEV Sbjct: 299 TRTLKTYADNDPVISKQIEKSKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEV 358 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 V+ V + L +LEEHP EAK+I KV+ A+ R AAR+AR+ +RK + LPG Sbjct: 359 SGAVQQAVGEALGYYLEEHPKEAKLICDKVILAATARIAARKARESVQRKNPMSGGGLPG 418 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS +DPK SE+FLVEGDSAGGSAKQGR R QAILPL+GKILNVE+ ++ K+ ++ Sbjct: 419 KLADCSNKDPKTSEIFLVEGDSAGGSAKQGRDRYTQAILPLKGKILNVEKVQWHKVFEAE 478 Query: 473 EIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +I ++G G +I+KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 SVMNIIQSIGVRFGVEGEDDKEANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPR 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEE-----IELFCDSKGV 581 +I G LYI PPLY T ++ Y +E+ + ++ + +E G Sbjct: 539 IIQEGHLYIATPPLYLCTYKNKVREYCYNEQQRQAFIDKYAEGQEDNKSIHVQRYKGLGE 598 Query: 582 ISKNDLRN 589 ++ L Sbjct: 599 MNPEQLWE 606 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 56/71 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I +QRYKGLGEMN QLWETT++P R L +V I +A+ AD++FS LMGD+VEPRREF Sbjct: 586 KSIHVQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIQNAADADEIFSMLMGDDVEPRREF 645 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 646 IEQNATYANID 656 >gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar entomocidus] Length = 632 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 406/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K+RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKVRYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 88/447 (19%), Positives = 152/447 (34%), Gaps = 47/447 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKV 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + A +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGD+VEPRR FIQEN+ LD Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis] Length = 627 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADEA 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 636 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 413/591 (69%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +YD +IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L GY Sbjct: 1 MS--MNEQTYDESNIQVLEGLEAVRKRPGMYIGSTS-VRGLHHLVWEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ I VT++ D S TV DNGRGIP ++++ S EV+MT LHAGGKF YKVSGGL Sbjct: 58 ANKIDVTVHPDNSVTVEDNGRGIPVGMNEKLQKSTLEVVMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ + + +KR+G+IY+ + G + V G T+ TF P + Sbjct: 118 HGVGVSVVNALSTKVIVEVKRDGHIYQQEYHRGTPQYDVRVIGDTTETG-TKTTFYPDPE 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F+Y+TL R+REL+FLN + ISL D+R+ + + Y+GGI +V +L+++ Sbjct: 177 IFTETTVFDYNTLLTRIRELAFLNKGINISLTDERTGQS--ESFHYEGGIMEYVRFLNQN 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L + PI ++G RD I +++++++NDGY EN+ F NNI +GGTH SG +SALTR Sbjct: 235 REVLHEEPIYVEGQRDMIQVEISLQYNDGYTENIYSFANNIHTHEGGTHESGFKSALTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K++ ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES Sbjct: 295 INDYARKTGMIKENDSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +++E+P ++ I++K L AS R+AAR+AR+LTRRK L++++LPGKLADCS Sbjct: 355 FAEKLQEFMDENPSVSRRILEKSLQASRAREAARKARELTRRKSALEVSALPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++L + EI +IT Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILGNAEIRAIIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG+D FDI+K RYHKIIIMTDADVDGAHIRTLLLTFFFR M +I G++YI +P Sbjct: 475 ALGTGIGED-FDISKARYHKIIIMTDADVDGAHIRTLLLTFFFRYMRKIIEAGYVYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PL+ I R K ++Y E+ + + ++ G ++ L Sbjct: 534 PLFKIERNKVVRYANSEKERDQIIAEFGEGAKVNVQRYKGLGEMNAEQLWE 584 Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S ++ Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILGNAEIRAIITALGTGIGEDFDISKARYHKIIIM 497 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F F K I + + L I ++ D I Sbjct: 498 TDADVDGAHIRTLLLTFFFRYMRKIIEAGYVY-IAQPPLFKIERNKVVRYANSEKERDQI 556 Query: 727 FSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + +G +++QRYKGLGEMNA QLWETT++P++R + +V I+DA QAD +F LMGD Sbjct: 557 IAEFGEGAKVNVQRYKGLGEMNAEQLWETTMDPESRVMQQVSISDAIQADAIFDTLMGDN 616 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRREFI E++ LDI Sbjct: 617 VEPRREFIHEHAKYVKNLDI 636 >gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina] gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis] gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan] gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo] gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki] gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis] gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis] gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 591 bits (1524), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70] gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70] Length = 640 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 296/592 (50%), Positives = 402/592 (67%), Gaps = 7/592 (1%) Query: 1 MS-DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + +YDA IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G Sbjct: 1 MTMEQKIEHTYDASQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+ D ++DNGRGIP D+ ++ G A EVIMT LHAGGKF YKVSGG Sbjct: 60 YCTEINVTIEKDNIIAITDNGRGIPVDIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L++ + R+G I+ + G+ L V G + TGT V F P Sbjct: 120 LHGVGASVVNALSEELEVYVHRDGKIHYQKYQRGVPCTDLEVIGET-DRTGTTVRFKPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ F+Y+TL RLREL+FLN ++I+L DKR + Y+GGI+++V +L+R Sbjct: 179 EIFTETTEFDYETLATRLRELAFLNRGLKITLEDKRVENRKNE-YHYEGGIKSYVKHLNR 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L + PI I G RD I +++A+++ND Y N+ F NNI +GGTH SG ++ALTR Sbjct: 238 TREVLHEEPIYIIGERDGIYVEIALQYNDSYSSNIYSFVNNIHTHEGGTHESGFKTALTR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K + ++ G+D REG T+++SIK P P+F QTK KL +S+ R+V ++ Sbjct: 298 IINDYARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARAVTDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+ IV+K + A+ R AA++AR+LTRRK L+I++LPGKLADCS Sbjct: 358 IFSEQFETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEISNLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SEL++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+LS+ E+ +I Sbjct: 418 SKDPSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTGIG+D FDI K RYHKIIIMTDADVDGAHIRTLLLTFF+R M I G++YI + Sbjct: 478 TALGTGIGED-FDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +GK ++Y ++ LE L + + G ++ L Sbjct: 537 PPLYKIEQGKQVKYAYNDRQLEKILAELPENPKPTIQRYKGLGEMNPEQLWE 588 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 41/344 (11%) Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF----------------LYIIK 538 R H+I+ D ++ G +R L + PS G ++ + Sbjct: 303 ARKHQILKDNDPNLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARAVTDAIFSEQ 362 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 + + + + ++ + + S IS +L + D D Sbjct: 363 FETFLLENPTIARKIVEKGMMAARARLAAKKARELTRRKSALEIS--NLPGKLADCSSKD 420 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW----- 653 I + Y + A + ++ + + + RL+ I +E Sbjct: 421 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAIITAL 480 Query: 654 -HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIE-ENYLTILS 706 G + DI R + + ++G+ I + F +Y R F R L Sbjct: 481 GTGIGEDFDITKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMREFIERGYVYIAQPPLY 540 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTR 760 I G ++K L+ I + + ++QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 KIEQGKQVKYAYNDRQLEKILAE----LPENPKPTIQRYKGLGEMNPEQLWETTMNPETR 596 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +LL+V + DA +AD+ F LMGD+VEPRR+FI+EN+ LDI Sbjct: 597 TLLQVSLQDAIEADETFEILMGDKVEPRRQFIEENARYVKNLDI 640 >gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar higo] gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar kenyae] gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar azorensis] gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar zhaodongensis] Length = 632 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 47/447 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGD+VEPRR FIQEN+ LD Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis] Length = 627 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 288/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 156/461 (33%), Gaps = 46/461 (9%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|330837805|ref|YP_004412446.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374] gi|329749708|gb|AEC03064.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374] Length = 660 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 279/594 (46%), Positives = 391/594 (65%), Gaps = 10/594 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D + Y A+SIQ+LKGL+AV+KRP MYIG T G GLHH++YE++DN+IDE++ GY Sbjct: 20 MADAEGSRKYTANSIQVLKGLEAVRKRPGMYIGST-GIEGLHHLVYEIVDNSIDEAMAGY 78 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I +T+ TV DNGRGIP D+H E S EV++T LHAGGKF++ SYKVSGGL Sbjct: 79 CDYIRITIEPGQIITVEDNGRGIPVDIHPVENKSTLEVVLTMLHAGGKFDKGSYKVSGGL 138 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS W+++ + R N+Y + GI D P+ V G + TGT V F + Sbjct: 139 HGVGSSVVNALSEWMEVTVHRAPNVYRQVYHKGIPDAPVEVIGQT-DRTGTIVRFKADTT 197 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I +++Y TL R REL+FLN + IS+ D+R+ E +E ++GGI++FV YL+++ Sbjct: 198 IMDTDEYSYTTLAERFRELAFLNKGITISVGDERTEEKKERNFCFEGGIKSFVEYLNKNN 257 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 K + PI + +D++ ID+A+++ND Y E + F NNI ++GGTHLSG RS +TR + Sbjct: 258 KTIHPEPIFFEREKDDLKIDIALQYNDRYDEILYTFVNNINTREGGTHLSGFRSGMTRAV 317 Query: 301 TSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 ++K+ K DD REG T+++SIK+PDP+F QTK KL + V+ +V S Sbjct: 318 NEQLKKNAKLTKKFTDPLTTDDLREGLTAIVSIKIPDPQFEGQTKMKLGNQRVQGIVTSV 377 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ + +E P ++I++K + A+ R AAR AR R+ LPGKLA C+E Sbjct: 378 VYENLTNYFDEFPAVTEMILEKCVSAAKARMAARDARARVRKSAE--GLGLPGKLAPCAE 435 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP KSE+F+VEGDSAGGSAKQGR R+ QAILPL GK+LNVE+AR +K++ + ++ +I Sbjct: 436 KDPAKSEIFIVEGDSAGGSAKQGRDRQCQAILPLWGKMLNVEKAREEKVMDNDKLTPVIA 495 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +LG G+G FD K+RYHK+IIM DADVDG+HIRTLLLTFFFR M LI G++Y P Sbjct: 496 SLGAGLG-SHFDAEKVRYHKVIIMADADVDGSHIRTLLLTFFFRYMRPLIEKGYVYFAMP 554 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSL----SEEIELFCDSKGVISKNDLRN 589 PLY IT GKS+ Y DE++ L ++ ++ G ++ + L Sbjct: 555 PLYKITVGKSVSYAYDEDARVRILTENNVGPDGNKAAIQRYKGLGEMNPDQLWE 608 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QLWETT+NPDTR + +V + DA +AD +FS LMG+EVEPRR FI+EN Sbjct: 592 IQRYKGLGEMNPDQLWETTMNPDTRMITQVCLEDAIEADQVFSMLMGEEVEPRRVFIEEN 651 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 652 ATYVSNLDV 660 >gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister micraerophilus DSM 19965] gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister micraerophilus DSM 19965] Length = 646 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 307/653 (47%), Positives = 417/653 (63%), Gaps = 18/653 (2%) Query: 1 MSDNIQNSS--------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 MS+ + + Y A I++L+GL+AV+ RP MYIG T GLHH++YEV+DN+ Sbjct: 1 MSEENRKAGASGRKDGHYSAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNS 59 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L G+ I V+LN DGSCTV DNGRGIPT +H E G A EV++T LHAGGKF + Sbjct: 60 IDEALAGFCTHIEVSLNDDGSCTVVDNGRGIPTGMH-ETGRPAMEVVLTVLHAGGKFGGE 118 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 Y +SGGLHGVG+SVVNALS W K+ ++R+G +EM+F G + + G +TGT Sbjct: 119 GYAISGGLHGVGISVVNALSEWTKVNVRRDGKFHEMAFCRGDVSESMRTYGETS-ETGTT 177 Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 VTF P IF DF+YDTL+ R+REL+FLN ++I+L D R R Y GGI Sbjct: 178 VTFKPDPLIFKEGTDFDYDTLKVRMRELAFLNKGLRITLSDNRDGVSRVEEFHYAGGIVE 237 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 F+ +L+ K + I +G RD I +D+AM++ GY E++ F N+I +GG HLSG Sbjct: 238 FIKFLNEGKDAVHDDVISFEGERDKIIVDIAMQYQTGYSESMYTFVNDINTTEGGMHLSG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALTR I Y + K+++ ++ GDD REG T V+S+K+P+P+F QTK KL + E Sbjct: 298 FRSALTRTINDYARTNNLLKENEDNLTGDDVREGLTCVISVKVPNPQFEGQTKTKLGNLE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ VV++ V++GL +LEEHP EA++IV+K + AS R+AA+RAR+LTRRK L+++SLP Sbjct: 358 VKGVVDNIVSEGLHIYLEEHPSEARLIVEKGITASRAREAAKRARELTRRKNALEVSSLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKL+DCSE+DPKK+E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++L+S Sbjct: 418 GKLSDCSEKDPKKTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARVDRVLNS 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 I +ITA GTG+ + FDI+KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M LI Sbjct: 478 DTIRMMITAFGTGV-SEGFDISKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITE 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI KPPLY + +G+ Y D++ L G + L N Sbjct: 537 GHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQRYKGLGEMDPEQLWNT- 595 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + +E + + + + + N N Sbjct: 596 ----TMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMNVTNL 644 Score = 170 bits (432), Expect = 6e-40, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 3/126 (2%) Query: 681 SIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738 + +F +Y + + + L + G + T + + GR G ++QR Sbjct: 521 LLLTFFYRYMKPLITEGHVYIAKPPLYQVRKGRQKYYTYDDDEQNKLLDEIGRDGCTIQR 580 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLW TT+NP+ R ++RV++TDA +AD LF+ LMGD+VEPRR+FI+EN++ Sbjct: 581 YKGLGEMDPEQLWNTTMNPEQRVMMRVELTDAVEADRLFTILMGDKVEPRRKFIEENAMN 640 Query: 799 S-ALDI 803 LDI Sbjct: 641 VTNLDI 646 >gi|284037876|ref|YP_003387806.1| DNA gyrase subunit beta [Spirosoma linguale DSM 74] gi|283817169|gb|ADB39007.1| DNA gyrase, B subunit [Spirosoma linguale DSM 74] Length = 666 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 284/605 (46%), Positives = 390/605 (64%), Gaps = 21/605 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + S+Y AD+IQ+L+GL+AV+KRPSMYIGD G GLHH+I+EV+DN+IDE+L GY D Sbjct: 13 DTTKSNYGADNIQVLEGLEAVRKRPSMYIGDV-GIRGLHHLIWEVVDNSIDEALAGYCDK 71 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I+VT+N D S TV DNGRGIPT ++ + G SA E+ MT LHAGGKF++ +YKVSGGLHGV Sbjct: 72 ISVTINPDNSITVQDNGRGIPTGINTKMGKSALEIAMTILHAGGKFDKDTYKVSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVS VNALS+ +++ + REG I+E + G+ + V G A DTGT F P + IF+ Sbjct: 132 GVSCVNALSTDVRVEVHREGKIFEQEYKIGVPQYDVRVIGEAT-DTGTTTHFKPDASIFT 190 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAFVSYLDR 238 + YDT+ RLREL++LN + I L D+ R+ F +GG+ FV +LD Sbjct: 191 ETVYKYDTVAGRLRELAYLNKGIHIFLKDMREVDETGEPVRQDDFFSEGGLIEFVEFLDE 250 Query: 239 HKKP-LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + PI ++ ++ + +A+ +N ENVL + NNI +GGTH+ G RSALT Sbjct: 251 TRPALDGMKPIYMENTKGATPVQVALVYNYEAGENVLSYVNNINTHEGGTHVQGFRSALT 310 Query: 298 RQITSYVEKS---FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 R + +Y +K+ K + G+D R+G T+V+S+K+ +P+F QTK KL + +V S Sbjct: 311 RVLKNYADKNPGVLPKNSGKVTFSGEDFRKGLTAVISVKVQEPQFEGQTKTKLGNQDVVS 370 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPG 412 V + D L WLEE+P A+ IVKKVL ++ R AA A R +T RK + LPG Sbjct: 371 AVSQTMADLLETWLEENPKTAQGIVKKVLVSAQARIAADLAYKRIMTERKDFMGGMGLPG 430 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS+ DP+K EL+LVEGDSAGG+AKQGR+R QAILPLRGKILNVE+A K+ ++ Sbjct: 431 KLADCSDTDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKAMEHKIYENE 490 Query: 473 EIGTLITALGTGIGQDS----FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 EI + TALG + + +++KLRYHKIIIMTDADVDG+HIRTL+LT F+R M +L Sbjct: 491 EIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIRTLILTLFYRNMKAL 550 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISK 584 I NG++YI +PPLY + +GK +Y E E + + S E G ++ Sbjct: 551 IDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREENVGVQRYKGLGEMNA 610 Query: 585 NDLRN 589 L + Sbjct: 611 EQLWS 615 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%) Query: 626 SDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 + E ++ + L RL +++ + + I++ L + + Sbjct: 487 YENEEIKNIWTALGVRLEKKDDETVMNLDKLRYHKIIIMTDADVDGSHIRTLILTLFY-- 544 Query: 686 GSKYKRIFSNRIEENYL----TILSLICNG-DKIKITGPCSLLDTIFSIGRKG----ISM 736 R I+ Y+ L L+ G ++ + + G + + Sbjct: 545 -----RNMKALIDNGYIYIAQPPLYLVKKGKEERYCWTEAQREAAVKELAGSGREENVGV 599 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLW TT+NPDTRSL V + A+ AD +FS LMGDEV PRREFI+ N+ Sbjct: 600 QRYKGLGEMNAEQLWSTTMNPDTRSLKVVTVESAADADHVFSTLMGDEVAPRREFIERNA 659 Query: 797 LPSALDI 803 + +D+ Sbjct: 660 KYARVDV 666 >gi|219685160|ref|ZP_03539980.1| DNA gyrase, B subunit [Borrelia garinii Far04] gi|219673256|gb|EED30275.1| DNA gyrase, B subunit [Borrelia garinii Far04] Length = 634 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 284/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYAASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIDVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + I++ DKR+ + + +++GGI++FV YL K Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE II++K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + + + G ++ L +D + Sbjct: 539 RIYYCYDEKEKEKFLDSIETKNRNNISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYCYDEKEKEKFLDSIETKNRNNISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|229816230|ref|ZP_04446540.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM 13280] gi|229808238|gb|EEP44030.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM 13280] Length = 674 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 280/678 (41%), Positives = 399/678 (58%), Gaps = 21/678 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + Y I++L+GL+AV+ RP MYIG T +GLHH+++E++DN++DE++ G+ Sbjct: 1 MAN---ENEYGGSEIKVLEGLEAVRVRPGMYIGSTSS-TGLHHLVWEIVDNSVDEAMAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV DNGRGIP D+H + I EV+MT LHAGGKF+ +YKVSGGL Sbjct: 57 CSSIEVTVHPDNSITVVDNGRGIPVDMHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS + ++++R+G +YEM F G + G++ T VTF P + Sbjct: 117 HGVGVSVVNALSKKMNVKVRRDGKVYEMEFSRGKTTQKMREIGTSSTTG-TTVTFWPDDE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++D L RL++ +FLN +++I L D+RS EP+ Y GGI FV +L+ K Sbjct: 176 IFETTVYDFDILHDRLQQTAFLNKNLKIVLRDERSVEPQVEEFCYAGGIIDFVKFLNEGK 235 Query: 241 KPL--MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 ++ PI + G+ +++A++WN Y E+V+ F N+I +GG H+ G Sbjct: 236 TVPDGLKDPIYLAGASEDGAPVEKTGEVEVAIQWNTSYSESVVSFANDIRTIEGGMHMEG 295 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R ALT I Y K+ K+ + ++ GDD REG T+V+S+K+ DP+F QTK KL SS Sbjct: 296 FRGALTSVINEYARKNGIIKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSF 355 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++ V++GL+ +LEEHP +A+ I+KK AS R+AAR+AR+ TRRK +L+ ASLP Sbjct: 356 MRTLTRKIVSEGLAEYLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLP 415 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCSER+ + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER + SS Sbjct: 416 GKLADCSERNAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSS 475 Query: 472 QEIGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + I +LITA+G G+ FDI K RYHKIIIMTDADVDGAHIR LLLTFF++ M Sbjct: 476 ETIQSLITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMR 535 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI G++Y+ PP++GI + YV + L + + Sbjct: 536 PLIDAGYVYVACPPIFGIKVRNKIHYVY--PNGRQAEDEILRDSIAALGLNPDESEDEQS 593 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 D + + I ++ + A R + Sbjct: 594 NGKVTKKRKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIVADRAVRELMGS 653 Query: 647 EKSEKSWHGSINNSDILV 664 E + + + D Sbjct: 654 EVGYRREYIEKHAHDARF 671 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 RKG ++QRYKGLGEM+ QL TT++P TR L RV I DA AD LMG EV RRE Sbjct: 601 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIEDAIVADRAVRELMGSEVGYRRE 660 Query: 791 FIQENSLPSA-LD 802 +I++++ + LD Sbjct: 661 YIEKHAHDARFLD 673 >gi|258513372|ref|YP_003189594.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771] Length = 635 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 302/589 (51%), Positives = 417/589 (70%), Gaps = 6/589 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + I Y A+ IQ+L+GL+AV++RP MYIG T G GLHH++YEV+DN+IDE++ GY Sbjct: 1 MPERI-TERYGAEEIQVLEGLEAVRRRPGMYIGST-GAKGLHHLVYEVVDNSIDEAMAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV+DNGRGIP D+H + G SA E++MT LHAGGKF YKVSGGL Sbjct: 59 CDHIEVFINEDNSITVTDNGRGIPVDIHSKTGNSAVELVMTTLHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS WL++ ++R+G I+ + GI + L + G + TGT++TF P + Sbjct: 119 HGVGVSVVNALSKWLEVEVRRQGKIFFQRYERGIPVSDLKIVGDSSF-TGTKITFSPDEE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ +TL+ RL+EL++LNS V+I L D + +GGI+ FV+++++ K Sbjct: 178 IFEDVIFSRETLEQRLQELAYLNSRVKIYLKDFINNLEFSYMY--EGGIKDFVAHINQDK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L ++P+ +D++ +++AM++ D Y EN+ + NNI DGGTH +G RSALTR I Sbjct: 236 ILLPEAPLYFVREKDHVMVEVAMQYTDAYFENLFSYVNNIHTIDGGTHEAGFRSALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K+ K ++ ++ G+D REG T+V+SIK+P+P+F QTK KL +SEVR +V+S V Sbjct: 296 NDYAKKNNLIKNNEGNLSGEDIREGLTAVISIKVPEPQFEGQTKGKLGNSEVRGIVDSVV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 +GLS +LEE+P +K I++K + A R+AAR+AR+LTRRK VL+ ++LPGKL+DCS R Sbjct: 356 AEGLSTFLEENPAVSKKIIEKSISAFRAREAARKARELTRRKNVLESSTLPGKLSDCSNR 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SEL+LVEGDSAGGSAKQGR R+ QAILPL+GKILNVE+AR DK+L++ EI +ITA Sbjct: 416 DPSESELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARLDKILNNDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTGIG+D FDI K RYHK+IIMTDADVDG+HIRTLLLTFF+R M LI G+++I +PP Sbjct: 476 LGTGIGED-FDITKARYHKLIIMTDADVDGSHIRTLLLTFFYRYMRPLIEAGYIFIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + +GK Y+ + LE+ L + G + L + Sbjct: 535 LYRLKKGKMEIYLYSDRDLENKLKEVGRNGISIQRYKGLGEMDAQQLWD 583 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 12/192 (6%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672 +E+A + + N + + + +L + + + + K L+ V Sbjct: 455 VEKARLDKILNNDEIRAMITALGTGIGEDFDITKARYHK-----------LIIMTDADVD 503 Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK 732 + F + I + I + L +I + L + + +GR Sbjct: 504 GSHIRTLLLTFFYRYMRPLIEAGYIFIAQPPLYRLKKGKMEIYLYSDRDLENKLKEVGRN 563 Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 GIS+QRYKGLGEM+A QLW+TT++P+ R++L V++ +A++AD +F LMGD VEPRR FI Sbjct: 564 GISIQRYKGLGEMDAQQLWDTTMDPENRTILMVELENAAEADKIFDTLMGDRVEPRRSFI 623 Query: 793 QENSLPS-ALDI 803 +++ LDI Sbjct: 624 NKHAHDVRNLDI 635 >gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar poloniensis] Length = 632 Score = 591 bits (1523), Expect = e-166, Method: Composition-based stats. Identities = 289/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L I G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204] gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204] Length = 664 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 264/592 (44%), Positives = 373/592 (63%), Gaps = 8/592 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D +Y+ IQ+L GL+AV+KRP MYI T GLHH+++E++DN IDE++ GYA Sbjct: 24 DMKVTHTYNDSDIQVLDGLEAVRKRPGMYIASTSS-KGLHHLVWEIVDNGIDEAMAGYAS 82 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +TVT++ D TV D+GRG+PT +H++ G S E I T LHAGGKF +YKVSGGLHG Sbjct: 83 TVTVTVDKDNIITVEDDGRGMPTGIHEKTGKSTIETIFTVLHAGGKFGGGAYKVSGGLHG 142 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 VG SVVNALSSWL++ + +G Y + F N G L+ G+ + G+ V F Sbjct: 143 VGASVVNALSSWLEVTVFHDGKEYYIRFENGGHPVGTLIEKGTCPADKHGSTVRFKADPT 202 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLD 237 IF+ + +D L+ RLR+L+FLN S+ + + R + GG++ + +L+ Sbjct: 203 IFTETVAYEHDILRDRLRQLAFLNKSICLKFNDLREEDEAKRHYVFKFDGGLKQYTEFLN 262 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R++ + I +G NI +++A ++NDGY+ N+ F NNI +GGTH G R AL Sbjct: 263 RNRDVVNHEIIYSEGYESNIQVEVACQYNDGYNPNIYTFCNNINTAEGGTHEEGFRLALN 322 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I Y + K+ ++ DDCREG T+V+S+K PDP++ QTK KL +SEVR +V Sbjct: 323 RVINKYARDTGFLKEKDDNLTTDDCREGLTAVISVKHPDPQYEGQTKTKLGNSEVRKIVS 382 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 L +L E+P EAK+I++KV AS R AA++AR+LTRRK L+++ LPGKLADC Sbjct: 383 DIFGTQLERYLMENPDEAKVILEKVALASQARMAAKKARELTRRKSALEVSPLPGKLADC 442 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +D E+++VEG SAGGSAKQGR QAILPLRGKILNVE+AR ++ + EI ++ Sbjct: 443 SSKDASICEIYIVEGQSAGGSAKQGRDSHFQAILPLRGKILNVEKARQSRIYENAEIRSM 502 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA G G+ + D+ KLRYHKI+IMTDADVDGAHIRTLLLTFF+R + L+ G++YI Sbjct: 503 ITAFGCGVSDEI-DLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYLRPLLEQGYIYIA 561 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +PPLY + +G++++Y + LE+ G ++ L Sbjct: 562 QPPLYKVQKGQTVRYAYTDNQLEEVKRELG-DRLSIQRYKGLGEMNPEQLWE 612 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 10/128 (7%) Query: 681 SIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTI-FSIGRKGIS 735 + +F +Y R +E+ Y+ L + G ++ + L+ + +G + +S Sbjct: 540 LLLTFFYRYLRPL---LEQGYIYIAQPPLYKVQKGQTVRYAYTDNQLEEVKRELGDR-LS 595 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN QLWETT++P R+L+RV + DA AD F+ LMG+EVEPR+ FI EN Sbjct: 596 IQRYKGLGEMNPEQLWETTMDPKNRTLIRVAVGDAEAADYNFTMLMGEEVEPRKNFIVEN 655 Query: 796 SLPS-ALD 802 + + LD Sbjct: 656 AHFAENLD 663 >gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 648 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 297/660 (45%), Positives = 402/660 (60%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + YDA +IQIL+ AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY Sbjct: 1 MVEKMSK--YDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGL Sbjct: 58 CSRINVIIHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165 HGVG+ VVN LS WLK IKR+G IY + G + V G Sbjct: 118 HGVGIHVVNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEK 177 Query: 166 -GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 GT + F P ++IF +F Y ++ +LR+L+FLN ++I+L D+RS + Sbjct: 178 FKYSRGTYIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEIALEDERSGKK--EIFK 235 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 Y GGI FV +L+ P+ + + + +D I ++ AM++ND EN+L F N I + Sbjct: 236 YDGGIVEFVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVE 295 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH+SG RSALT+ I + + K S+ G+D REG T+V+ +K P+P+F QTK Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTK 354 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL +SEV+ VV S VN LS + EEHP A IV K + A+ R AAR+AR+L RRKG Sbjct: 355 AKLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGY 414 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ LPGKLADCSE +P+++ELF+VEGDSAGGSAKQ R R QAILPLRGKILNVE+AR Sbjct: 415 LESLDLPGKLADCSEENPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKAR 474 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 DK+ + EI LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R Sbjct: 475 IDKVFKNNEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRY 533 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 MP LI G +YI + PLY I +GK++ YV +E E + L G ++ Sbjct: 534 MPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNP 591 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 L + ++ + + E + + E + +N Sbjct: 592 QQLWDT-----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + V +++ ++ I + + S ++ Sbjct: 455 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 512 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I + + + + + + Sbjct: 513 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 572 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +G S+QR+KGLGEMN QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V Sbjct: 573 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 630 Query: 787 PRREFIQENSLPS-ALDI 803 PRREFI +++ +DI Sbjct: 631 PRREFIIQHAKEVMNIDI 648 >gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 285/566 (50%), Positives = 401/566 (70%), Gaps = 5/566 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE 571 +GK +QY +++ LE L + Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPK 562 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 85/442 (19%), Positives = 150/442 (33%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN + +WETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTLIWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|167766860|ref|ZP_02438913.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1] gi|167711408|gb|EDS21987.1| hypothetical protein CLOSS21_01377 [Clostridium sp. SS2/1] gi|291558400|emb|CBL37200.1| DNA gyrase, B subunit [butyrate-producing bacterium SSC/2] Length = 640 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 313/638 (49%), Positives = 414/638 (64%), Gaps = 4/638 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 +N Y AD IQIL+GL+AV+KRP MYIG T E GLHH++YE++DNA+DESL G+ D Sbjct: 3 TQKNGEYGADQIQILEGLEAVRKRPGMYIGSTS-EKGLHHLVYEIVDNAVDESLAGFCDT 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VTLN DGS TV DNGRGIP ++K++G+S+ EV+ T LHAGGKF YKVSGGLHGV Sbjct: 62 IIVTLNKDGSVTVEDNGRGIPVGINKKKGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS WL++ + +EG+I++ + G + PL V G + TGT VTF P + IF Sbjct: 122 GSSVVNALSDWLEVTVCKEGHIHKQRYERGKVCYPLKVLGDT-DKTGTTVTFYPDATIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF+Y+TL+ RLRE +FL +++I L D R E T Y+GGI+ FV+YL++ K+ L Sbjct: 181 TIDFDYNTLKRRLRETAFLTKNLKIVLTDDRGEEQVSETFHYEGGIKEFVTYLNKGKEAL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I +G +D + +++A + ND Y+E L F NNI +GGTHLSG + ALT Y Sbjct: 241 YPDVIYCEGEKDGVYVEVAFQHNDSYNETSLSFVNNIITPEGGTHLSGFKMALTSTFNDY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ + ++ G+D REG TSV+SIK+ +P+F QTK+KL +SE R V S +++ Sbjct: 301 ARKNNLLKEKEDNLSGEDIREGLTSVISIKIGEPQFEGQTKQKLGNSEARGAVNSILSEQ 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +LE++P AKII +K + A RDAAR+ARDLTRRK LD SLPGKLADCS+++P+ Sbjct: 361 LKYFLEQNPQVAKIICEKAVLAQRARDAARKARDLTRRKTALDGMSLPGKLADCSDKNPE 420 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+L ++EI +ITA GT Sbjct: 421 NCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKVLVNKEIQAMITAFGT 480 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY Sbjct: 481 GIHED-FDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYR 539 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + K Y +E L + L G + L + D K L Sbjct: 540 VEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILLRV 599 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + + E +E + A + N Sbjct: 600 NLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQN 637 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707 G + DI R + + ++G+ I + + R I++ Y+ L Sbjct: 480 TGIHEDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFIYRFMPELIKKGYVYLAQPPLYR 539 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K L + + IGR + +QRYKGLGEM+A QLW+TT++P+ R LLRV Sbjct: 540 VEKNKKFWYAYSDEELNNILQEIGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEKRILLRV 599 Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + AS+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 600 NLDEDSASEIDLTFTTLMGDQVEPRREFIEANAKYVQNLDI 640 >gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 648 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 298/660 (45%), Positives = 402/660 (60%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + YDA +IQIL+ AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY Sbjct: 1 MVEKMSK--YDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGL Sbjct: 58 CSRINVIIHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165 HGVG+ VVN LS WLK IKR+G IY + G + V G Sbjct: 118 HGVGIHVVNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEK 177 Query: 166 -GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMF 224 GT + F P ++IF +F Y ++ +LR+L+FLN ++I+L D+RS + Sbjct: 178 FKYSRGTYIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEITLEDERSGKK--EVFK 235 Query: 225 YKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 Y GGI FV +L+ P+ + + + +D I ++ AM++ND EN+L F N I + Sbjct: 236 YDGGIVEFVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVE 295 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH+SG RSALT+ I + + K S+ G+D REG T+V+ +K P+P+F QTK Sbjct: 296 GGTHVSGFRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTK 354 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL +SEV+ VV S VN LS + EEHP A IV K + A+ R AAR+AR+L RRKG Sbjct: 355 AKLGNSEVKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGY 414 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ LPGKLADCSE DP+++ELF+VEGDSAGGSAKQ R R QAILPLRGKILNVE+AR Sbjct: 415 LESLDLPGKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKAR 474 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 DK+ + EI LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R Sbjct: 475 IDKVFKNNEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRY 533 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 MP LI G +YI + PLY I +GK++ YV +E E + L G ++ Sbjct: 534 MPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNP 591 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 L + ++ + + E + + E + +N Sbjct: 592 QQLWDT-----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 646 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + V +++ ++ I + + S ++ Sbjct: 455 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 512 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I + + + + + + Sbjct: 513 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 572 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +G S+QR+KGLGEMN QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V Sbjct: 573 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 630 Query: 787 PRREFIQENSLPS-ALDI 803 PRREFI +++ +DI Sbjct: 631 PRREFIIQHAKEVMNIDI 648 >gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048] gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621] gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621] gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048] Length = 642 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 285/594 (47%), Positives = 406/594 (68%), Gaps = 9/594 (1%) Query: 1 MS---DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSMEQKQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVS Sbjct: 60 AGYCDEINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ + R+G I+ + G+ L V G + TGT F P Sbjct: 120 GGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 S+IF+ + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L Sbjct: 179 DSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHL 237 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+P+ + P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++AL Sbjct: 238 NRSKQPIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTAL 297 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ Sbjct: 298 TRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTIT 357 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES ++ +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLAD Sbjct: 358 ESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLAD 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +DP SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T Sbjct: 418 CSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI Sbjct: 478 IITAIGTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYI 536 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +PPL+ + +GK +QY + + LE L + G ++ L Sbjct: 537 AQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 590 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 133/368 (36%), Gaps = 33/368 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 276 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 335 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ +I+ + +++ Sbjct: 336 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 395 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 396 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 455 Query: 632 VSLASKLANRLNFIAEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLE 678 + + RL+ I E + ++ V + Sbjct: 456 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 515 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L + G KI+ L+ I + + + Sbjct: 516 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 574 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 575 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 634 Query: 797 LPS-ALDI 803 LDI Sbjct: 635 KYVKNLDI 642 >gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17] gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4] gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4] gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17] Length = 640 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 288/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++DTL R+REL+FLN ++++ + DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ + GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVDGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 588 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 560 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 561 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FIQEN+ LDI Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640 >gi|307566039|ref|ZP_07628497.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A] gi|307345227|gb|EFN90606.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A] Length = 656 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 281/660 (42%), Positives = 394/660 (59%), Gaps = 18/660 (2%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++N + ++Y A +IQ+L+GL+AV+KRP+MYIGD E GLHH+I E +DN+IDE++ G Sbjct: 1 MTENQEHENNYSASNIQVLEGLEAVRKRPAMYIGDIS-EKGLHHLINETVDNSIDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT+N D S TV DNGRGIP D HK+ SA EV+MT LHAGGKF++ SYKVSGG Sbjct: 60 YCTDIEVTINADNSITVEDNGRGIPVDEHKKLHKSALEVVMTVLHAGGKFDKGSYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVS VNALS + ++ R+G IY+ + G P+ + G + TGT F P Sbjct: 120 LHGVGVSCVNALSKHMLSQVFRDGKIYQQEYEKGKPLYPVKIVGDT-DKTGTRQQFWPDG 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----DKRSPEPREITMFYKGGIEAFVSY 235 IF+ F +D + R+REL++LN+ ++I+L + + + R K G++ +V Y Sbjct: 179 TIFTTTVFQWDVVARRMRELAYLNAGIKITLTDLRPNAETGKTRTEVFHAKDGLKEYVRY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +DRH++ L I ++ + + I++A+ +N Y EN+ + NNI +GGTHL G R+A Sbjct: 239 VDRHRQHLFDDVIYLKSEKQGVPIEVAIMYNTDYTENIHSYVNNINTIEGGTHLQGFRTA 298 Query: 296 LTRQITSYVEK----SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LTR + +Y + S +K K + G+D REG T+V+S+K+ +P+F QTK KL +SE Sbjct: 299 LTRSLKAYADNDAQISKQIEKAKIEITGEDFREGLTAVISVKVAEPQFEGQTKTKLGNSE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V V+ V + LSA+LEEHP EAK+I KV+ A+ R AAR+AR+ +RK V+ LP Sbjct: 359 VSGAVQQAVGEALSAYLEEHPNEAKMICNKVVIAATARIAARKARESVQRKNVMTGGGLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +DPK E+FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ + ++ + Sbjct: 419 GKLADCSNKDPKVCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQRHRVFEA 478 Query: 472 QEIGTLITALGTGIGQDSF-----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 + + +I ++G G + +I KLRY KIIIMTDADVDG+HI TL++T F+R MP Sbjct: 479 ESVMNIIQSIGVRFGVEEDSDFEANIEKLRYDKIIIMTDADVDGSHIDTLIMTLFYRYMP 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 +I G L+I PPLY T K +Y E+ + ++ EE + + Sbjct: 539 KVIEQGHLFIATPPLYKCTYKKVSEYCYTEQQRQAFIDRYGAGEEGKNIHTQRYKGLGEM 598 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 + K A D E + AN N A Sbjct: 599 NPEQL--WETTMDPSKRLLKQVTIENAADADEVFSMLMGDDVEPRREFIEQNANYANIDA 656 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 1/75 (1%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 G K I QRYKGLGEMN QLWETT++P R L +V I +A+ AD++FS LMGD+VEP Sbjct: 582 EEG-KNIHTQRYKGLGEMNPEQLWETTMDPSKRLLKQVTIENAADADEVFSMLMGDDVEP 640 Query: 788 RREFIQENSLPSALD 802 RREFI++N+ + +D Sbjct: 641 RREFIEQNANYANID 655 >gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4] gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196] gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4] gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196] Length = 640 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 283/589 (48%), Positives = 404/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + G+ L V G + TGT F P S+IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 TETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY + + LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 174 bits (442), Expect = 5e-41, Method: Composition-based stats. Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 444 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 501 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 502 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 560 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 561 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 620 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FIQEN+ LDI Sbjct: 621 VEPRRNFIQENAKYVKNLDI 640 >gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGH 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + HK I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGHKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+ + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQASLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|302531361|ref|ZP_07283703.1| DNA gyrase, B subunit [Streptomyces sp. AA4] gi|302440256|gb|EFL12072.1| DNA gyrase, B subunit [Streptomyces sp. AA4] Length = 655 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 280/659 (42%), Positives = 390/659 (59%), Gaps = 20/659 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N S Y+A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GY Sbjct: 1 MTEN--KSEYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V D+GRGIP D+H +E EV++T LHAGGKF+ SY VSGGL Sbjct: 58 ATKVEVTLLADGGVRVVDDGRGIPVDIHPKEKKPTLEVVLTILHAGGKFDSDSYAVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L IK G + ++N + PL G A DTGT +TF D Sbjct: 118 HGVGVSVVNALSTKLLAEIKVGGRSWRQEYLNQVP-GPLEDLGPAT-DTGTTITFWADGD 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------MFYKG 227 IF +N++T+ RL+E++FLN + +SL D+R + Y G Sbjct: 176 IFETTTYNFETISRRLQEMAFLNKGLTLSLRDERVADEETEEDAAGKQARVKEVVYCYPG 235 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 G+E FV +++ K P+ +S I + +++AM+WN G+ +V F N I +GGT Sbjct: 236 GLEDFVKHINGSKDPIHESVISFDAKGSGLEVEVAMQWNTGFTPSVYTFANTINTHEGGT 295 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALTR + +Y + K+ ++ GDD REG +++SIK+ +P+F QTK KL Sbjct: 296 HEEGFRAALTRVVNAYAREKKLLKEKDANLTGDDVREGLAAIVSIKLAEPQFEGQTKTKL 355 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 +SE ++ V+ N+ L W E +P EAK I+ K + ++ R AAR+ARDL RRKG L+I Sbjct: 356 GNSEAKTFVQQQSNEWLGDWFERNPSEAKTIINKSISSAQARLAARKARDLVRRKGALEI 415 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 LPGKL DC DP + EL++VEGDSAGGSAK+GR QAILP+RGKI+NVE+AR D+ Sbjct: 416 GGLPGKLKDCRSNDPGECELYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARIDR 475 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L + E+ +LITALGTGI D FDI+KLRYHKI++M DADVDG HI TLLLT FR M Sbjct: 476 VLKNTEVQSLITALGTGI-HDDFDISKLRYHKIVLMADADVDGQHITTLLLTLLFRFMTP 534 Query: 528 LIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 LI +G +++ +PPLY I +S +Y ++ + + + D+ Sbjct: 535 LIEHGHVFLSRPPLYKIKWPRSEPEYAYSDKERDAVIQAGVEAGRRLPKDDAIQRYKGLG 594 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + QA D E S ++ A + F+ Sbjct: 595 EMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRNAKDVRFL 653 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA +LWETT++P R L +V + DA+QAD+LFS LMG++VE RR FI N Sbjct: 587 IQRYKGLGEMNAEELWETTMDPANRLLGQVTLDDAAQADELFSVLMGEDVEARRSFITRN 646 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 647 AKDVRFLDV 655 >gi|325336741|gb|ADZ13015.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Riemerella anatipestifer RA-GD] Length = 644 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 280/595 (47%), Positives = 393/595 (66%), Gaps = 12/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N Y A SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L GY D I Sbjct: 1 MSNKQYTASSIQSLEGIEHVRLRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT++ + +V DNGRGIP D H++E SA EV+MT++ AGGKF++ SYKVSGGLHGVG Sbjct: 60 TVTIHEGNAISVKDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS+ + +EG IY+ + G + G + GTEV F P IF+ Sbjct: 120 VSCVNALSTSTIATVYKEGKIYQQKYSKGRALEDVQEIG-TTDYRGTEVFFQPDDSIFNE 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240 +NYDTL RLREL+FLN + I++ D+R E T +GG++ FV ++D ++ Sbjct: 179 LVYNYDTLSARLRELAFLNKGINITITDERVKDEKGEFLTETFLSEGGLKEFVEFIDGNR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +M++ I ++G RD+I +++AMR+N + EN+ + NNI +GGTHL+G R ALTR + Sbjct: 239 ESIMENVIFMEGERDDIPVEVAMRYNTSFTENLHSYVNNINTHEGGTHLTGFRRALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + +K+K + GDD REG T+V+S+K+ +P+F QTK KL +SEV V+ V Sbjct: 299 KKYADDLGIPQKEKVEITGDDFREGLTAVISVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAK IV+KV+ A+ R AA++AR++ +RK + A LPGKL+DCS + Sbjct: 359 GEMLTNFLEENPTEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGAGLPGKLSDCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SE+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE++ K+ ++EI + TA Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMIHKVYENEEIKNIYTA 478 Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LG +G + +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M LI G++YI Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIEQGYVYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PPLY + +G Y +E+ E+ + S + G ++ L Sbjct: 539 ASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLGEMNPEQLWE 593 Score = 167 bits (422), Expect = 1e-38, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 7/119 (5%) Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLG 743 R IE+ Y+ I S L K+ + + KG+ +QRYKGLG Sbjct: 525 RYMKELIEQGYVYIASPPLYLLKKGNKKVYAWNEKEREEKTLEMSADGKGVEVQRYKGLG 584 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 EMN QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N++ + +D Sbjct: 585 EMNPEQLWETTLNPENRILKQVNIENAGEADRIFSMLMGDEVPPRREFIEKNAVYAKID 643 >gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis] Length = 632 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 289/585 (49%), Positives = 406/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L S + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELSAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELSAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar thompsoni] Length = 632 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++ +N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLSYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 154/447 (34%), Gaps = 47/447 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + S Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLSYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGD+VEPRR FIQEN+ LD Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|289579993|ref|YP_003478459.1| DNA gyrase subunit beta [Natrialba magadii ATCC 43099] gi|289529546|gb|ADD03897.1| DNA gyrase, B subunit [Natrialba magadii ATCC 43099] Length = 643 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 281/596 (47%), Positives = 390/596 (65%), Gaps = 12/596 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q S Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MS---QESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV++N D S +V+D+GRGIP D H+E A EVI+T LHAGGKF+ KSY+VSGGL Sbjct: 57 CDEITVSINEDDSISVADDGRGIPVDTHEEYDRPALEVILTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTEVTFLPS 178 HGVGVSVVNALSS L+ +KR+G +YE +F G + +TGTE+ F P Sbjct: 117 HGVGVSVVNALSSRLETTVKRDGGVYEHAFEIGEPIGDMERVRDMEPDEETGTEIQFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVS 234 DIF D ++ TL +RLREL+FLNS V+I+L D+R E T Y+GGI FV Sbjct: 177 DDIFETTDMSFSTLSNRLRELAFLNSGVRITLRDERERTEDGEAVAETYEYEGGIREFVE 236 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ + + + I + N+ +++AM+ ++ F NNI ++GGTHL+G ++ Sbjct: 237 YLNETRSAMHEDIIYFEDEDQNVRVEVAMQATQELQGSIHAFANNINTREGGTHLTGFKT 296 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + Y ++ + ++ G+D REG T+V+S+K PDP+F QTK KL +SEVR Sbjct: 297 ALTRVVNDYGNENNLLSDIEENLKGEDIREGLTAVVSVKHPDPQFEGQTKTKLGNSEVRG 356 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 +VE ++D L + EEHP A+ IV K ++A+ R AA++A +LTRRK L+ SLPGKL Sbjct: 357 IVEGAMHDCLGTYFEEHPDTAQAIVMKAVEAAKARKAAQKAEELTRRKSALESTSLPGKL 416 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC +DP+++ELF+ EGDSAGGSAKQ R+ E QA+LP++GKILNVE+ R D++L + EI Sbjct: 417 ADCQTKDPEEAELFIAEGDSAGGSAKQARNPEFQAVLPIKGKILNVEKHRLDRILENDEI 476 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +ITA+G GIG D FD+ +RY KII+ TDADVDGAHIRTL+LTFF+R M L+ G++ Sbjct: 477 RNMITAIGAGIG-DEFDVEDVRYKKIIMATDADVDGAHIRTLMLTFFYRHMRPLLEGGYV 535 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 Y +PPLY I + ++ + + + G ++ L Sbjct: 536 YATQPPLYRIRYRGETYDAMTDVERDEIVEEKCDGNPSQVQRFKGLGEMNPEQLWE 591 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ N + I + ++ V + Sbjct: 459 ILNVEKHRLDRILENDEIRNMITAIGAGIGDEFDVEDVRYKKIIMATDADVDGAHIRTLM 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG--ISMQR 738 F + + + + + G+ D I G +QR Sbjct: 519 LTFFYRHMRPLLEGGYVYATQPPLYRIRYRGETYDAMTDVER-DEIVEEKCDGNPSQVQR 577 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +KGLGEMN QLWETT+NP+ R L ++ + DA+ AD +FS LMGD VEPR++FI+EN+ Sbjct: 578 FKGLGEMNPEQLWETTMNPENRILKQITVEDAAAADKMFSVLMGDAVEPRKQFIKENAPE 637 Query: 799 SA-LDI 803 + +DI Sbjct: 638 AEWIDI 643 >gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273] gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272] gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272] gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273] Length = 640 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 285/589 (48%), Positives = 405/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIG-TTSGKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY +++ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNDKELERILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 161/467 (34%), Gaps = 47/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 248 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 294 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 295 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 354 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +I+ + +++ K + + L + Sbjct: 355 TESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 414 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 415 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 474 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 475 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 533 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 534 IAQPPLFKVQQGKKIQYAYNDKELERILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 593 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LDI Sbjct: 594 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLDI 640 >gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603] gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603] Length = 640 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 283/589 (48%), Positives = 403/589 (68%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KQMQENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVSIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ + G+ L V G + TGT F P S+IF Sbjct: 123 VGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + + +DTL R+REL+FLN ++++ + DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 TETTEYEFDTLATRMRELAFLNRNIKLIIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 481 GTNIGGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + +GK +QY + + LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 588 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 133/368 (36%), Gaps = 33/368 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ +I+ + +++ Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 393 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453 Query: 632 VSLASKLANRLNFIAEKSEKS-------------WHGSINNSDILVKRIARGVQEQFVLE 678 + + RL+ I E + ++ V + Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 513 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L + G KI+ L+ I + + + Sbjct: 514 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 573 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 632 Query: 797 LPS-ALDI 803 LDI Sbjct: 633 KYVKNLDI 640 >gi|213026883|ref|ZP_03341330.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 490 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 301/492 (61%), Positives = 387/492 (78%), Gaps = 4/492 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ TLITALG GI Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGI 478 Query: 486 GQDSFDINKLRY 497 G+D ++ +KLRY Sbjct: 479 GRDEYNPDKLRY 490 >gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus] Length = 627 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNCIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPSVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 150/442 (33%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + S+ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPSV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + A +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQGAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1] gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1] Length = 675 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 283/652 (43%), Positives = 391/652 (59%), Gaps = 47/652 (7%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y++++I+IL+GL+ V++RP+MYIG TD GLHH++YEV+DN+IDE+L GY I V Sbjct: 7 SNTYNSENIKILRGLEPVRERPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGYCTHIQV 65 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 ++ DGS +V DNGRGIP D K+ + +A E ++T LHAGGKF++ +Y+VSGGLHGVGV Sbjct: 66 VIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGV 125 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-------------------- 165 SVVNALS L + ++G Y M F G L Sbjct: 126 SVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCP 185 Query: 166 -----------GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 +GT + F P S IF +F+YD L HRLREL+FLNS + IS+ D+R Sbjct: 186 ETKEEFLNRYLSKISGTMIRFKPDSKIFETIEFDYDILAHRLRELAFLNSGITISIADER 245 Query: 215 SP--EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYH 270 E Y+GGI +V YL+ +P+ +S I + +D+A ++ Y Sbjct: 246 CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAAYS 305 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E V + N++ K+GGTHL G RSALT+ I +++ K S+ GDD REG T+++ Sbjct: 306 EKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTAII 365 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S++M +P+F QTK KL +SEV+ +V+S V L + EEHP E IV K + A R+ Sbjct: 366 SVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQARE 425 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+A++L RRK L+ + LPGKLADCSER +KSE+++VEGDSAGGSAKQGR R QAI Sbjct: 426 AARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQAI 485 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPLRGKILNVE+A K+L + EI LI+A+GTG+G+ FDI K RYH IIIMTDADVDG Sbjct: 486 LPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGES-FDIEKARYHHIIIMTDADVDG 544 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 AHI TLL+TFFFR + LI G++Y+ +PPLY I +GK +Y EE +++ L Sbjct: 545 AHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKG 604 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 G ++ + L + + IE A + Sbjct: 605 VNVQRYKGLGEMNASQLWA---------TTMDPETRVLKRVVIEDAAYANEI 647 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 8/169 (4%) Query: 643 NFIAEKSEKSWHGSINNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSN 695 N I G + DI R V + F F I + Sbjct: 507 NEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVDGAHISTLLMTFFFRYLQPLIEAG 566 Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 I + + + + + + +G KG+++QRYKGLGEMNASQLW TT+ Sbjct: 567 YIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKGVNVQRYKGLGEMNASQLWATTM 626 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 +P+TR L RV I DA+ A+++F +LMGD+V RR+FI+ ++ LDI Sbjct: 627 DPETRVLKRVVIEDAAYANEIFEKLMGDDVTARRDFIKRHAKEVTNLDI 675 >gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 640 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 287/589 (48%), Positives = 407/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 4 KEMQANSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVVIEEDDSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 123 VGASVVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DRTGTVTRFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++D L R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+ Sbjct: 182 KETTVYDFDILATRMRELAFLNRNIKLTIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKQ 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + P+ ++G++D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Sbjct: 241 PIHEEPVYVEGAKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVIN 300 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES + Sbjct: 301 DYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFS 360 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 361 EAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKD 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SE+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+ Sbjct: 421 PSISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GT IG D FDI+K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 481 GTNIGGD-FDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 + + +GK +QY +E+ LE L + G ++ L Sbjct: 540 FKVQQGKKIQYAYNEKELERILAELPAQPKPSIQRYKGLGEMNPAQLWE 588 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 142/367 (38%), Gaps = 31/367 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 274 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 333 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ ++ + +++ Sbjct: 334 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKK 393 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 394 ARELTRRKSALEVSSLPGKLADCSSKDPSISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 453 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-GVQEQFVLEGSSIFS 684 + + RL+ I E + + DI R + + ++G+ I + Sbjct: 454 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDISKARYHKVIIMTDADVDGAHIRT 513 Query: 685 ----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQ 737 F +Y R I + L + G KI+ L+ I + + S+Q Sbjct: 514 LLLTFFYRYMRQIIEHGYVYIAQPPLFKVQQGKKIQYAYNEKELERILAELPAQPKPSIQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 574 RYKGLGEMNPAQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAK 633 Query: 798 PS-ALDI 803 LDI Sbjct: 634 YVKNLDI 640 >gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 627 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKRGHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 152/463 (32%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKRGHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 627 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 289/632 (45%), Positives = 415/632 (65%), Gaps = 11/632 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK +QY +++ LE L + G ++ L +D ++ Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWET-----TMDPEVRSL 591 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + IE + + + S+ Sbjct: 592 LQVSLQDAIEADETFEILMGDKVEPRRNSIQE 623 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 89/463 (19%), Positives = 152/463 (32%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR IQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNSIQENAKY 627 >gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis] Length = 627 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYANHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 154/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ A ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YANHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis] gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 627 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|226309593|ref|YP_002769487.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599] gi|226092541|dbj|BAH40983.1| DNA gyrase subunit B [Brevibacillus brevis NBRC 100599] Length = 641 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 295/643 (45%), Positives = 421/643 (65%), Gaps = 10/643 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++++YDA IQ+L+GL+AV+KRP MYIG T GLHH+++E++DNAIDE+L GY D Sbjct: 5 TTKDTNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNAIDEALAGYCDE 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S +V+DNGRGIPT +H++ G S E ++T LHAGGKF YKVSGGLHGV Sbjct: 64 ILVVIHPDNSVSVTDNGRGIPTGIHEKTGKSTVETVLTVLHAGGKFGGGGYKVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS W+++ +K+ +Y M F G D L V G +TGT+VTF P IF+ Sbjct: 124 GSSVVNALSEWMEVEVKQNNQVYYMRFKVGAPDADLAVVGETE-ETGTKVTFKPDPTIFT 182 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F Y+ LQ R+REL+FLN ++I+L D R +E + Y+GGI FV YL+++++ Sbjct: 183 ETTVFEYEILQKRIRELAFLNKGLRITLKDTRPDHEKEESFHYEGGIIQFVEYLNKNREA 242 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L I +G ++ + +++A+++ND Y N+ F NNI +GGTH +G ++ALTR I Sbjct: 243 LHDDVIYCEGEKEGLVVEVALQYNDTYVSNIYSFANNINTHEGGTHETGFKTALTRVIND 302 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K+ ++ GDD REG T+++S+K+ +P+F QTK KL +SE RS+ ES D Sbjct: 303 YSRKFNFLKEKDPNLSGDDVREGITAIISVKIQEPQFEGQTKTKLGNSEARSITESVFGD 362 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + ++EE+P AK +V+K L AS R+AAR+AR++TRRK L++++LPGKLADCS +D Sbjct: 363 RFNTFMEENPGVAKKVVEKALMASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDA 422 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +SELF+VEGDSAGGSAK GR R QAILPLRGK+LNVE+AR DK+L + EI +ITALG Sbjct: 423 SESELFIVEGDSAGGSAKMGRDRHFQAILPLRGKVLNVEKARLDKILGNNEIRAIITALG 482 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG+G+D FDI K RYHK++IMTDADVDG+HIRTLLLTFFFR M LI G++YI +PPLY Sbjct: 483 TGVGED-FDITKARYHKVVIMTDADVDGSHIRTLLLTFFFRYMKQLIEAGYIYIAQPPLY 541 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 I +GK+L Y +++ ++ L + G ++ + L +D + Sbjct: 542 SIKQGKTLHYAYNDKQRDEVLATLKAQPKPNVQRYKGLGEMNADQLWET-----TMDPEV 596 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + ++ ++ + + + AN + Sbjct: 597 RTLLQVDLEDAMDADMVFETLMGDEVEPRREFIEQYAANVRDL 639 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 43/70 (61%), Positives = 55/70 (78%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMNA QLWETT++P+ R+LL+V + DA AD +F LMGDEVEPRREFI++ Sbjct: 572 NVQRYKGLGEMNADQLWETTMDPEVRTLLQVDLEDAMDADMVFETLMGDEVEPRREFIEQ 631 Query: 795 NSLPS-ALDI 803 + LDI Sbjct: 632 YAANVRDLDI 641 >gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 405/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDEGQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10] gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10] Length = 637 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 295/591 (49%), Positives = 409/591 (69%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + SYD IQ+L+GL+AV+KRP MYIG T+ E GLHH+++E++DN+IDE++ G+ Sbjct: 1 MS--LDQQSYDESQIQVLEGLEAVRKRPGMYIGSTN-ERGLHHLVWEIVDNSIDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ D + TV D+GRGIP +H++ G A EVIMT LHAGGKF YKVSGGL Sbjct: 58 CSHIWVTIEEDNTITVEDDGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALSS+L++ + +EG ++ +SF G + L V GS TGT + F + Sbjct: 118 HGVGASVVNALSSFLEVEVHKEGEVHYISFERGAVKEELNVIGSTE-KTGTLIRFKADNM 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ +++D L +RLRELSFLN + I + DKR + Y+GGI +FV +L+R Sbjct: 177 IFTETTVYDFDVLANRLRELSFLNKGLTIEITDKREEDKSAKYF-YEGGISSFVEHLNRT 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + PI I+ ++ I +++AM++ND + N+ F NNI +GGTH SG ++ALTR Sbjct: 236 KTALHEPPIFIESEKEGIQVEVAMQYNDSFASNLYSFANNINTHEGGTHESGFKTALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K++ ++IGDD REG T+++S+K+ +P+F QTK KL +SE R++ +S Sbjct: 296 INDYARKNGLFKENDPNLIGDDVREGLTAIVSVKIENPQFEGQTKTKLGNSEARTITDSL 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + ++ ++ E+P A+ IV+K + AS RDAA++AR+LTRRK L+++SLPGKLADCS Sbjct: 356 FTEHMAKFMAENPTVARQIVEKGIMASRARDAAKKARELTRRKSALEVSSLPGKLADCST 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SE+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+L++ EI +IT Sbjct: 416 KDASISEIYVVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILANNEIRAIIT 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG++ FDI K RYHKIIIMTDADVDGAHIRTLLLTF +R M LI G++YI +P Sbjct: 476 ALGTGIGEE-FDITKARYHKIIIMTDADVDGAHIRTLLLTFLYRYMRPLIEEGYIYIAQP 534 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY I +GK++ Y +E+ +E L S S + G ++ L Sbjct: 535 PLYQIKQGKAVHYAFNEKEMERILGELSASPKPGLQRYKGLGEMNPTQLWE 585 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 19/182 (10%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFS----FGS 687 RL+ I +E G DI R + + ++G+ I + F Sbjct: 458 KARLDKILANNEIRAIITALGTGIGEEFDITKARYHKIIIMTDADVDGAHIRTLLLTFLY 517 Query: 688 KYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-----LLDTIFSIGRKGISMQRYKGL 742 +Y R K +L + + + G+ QRYKGL Sbjct: 518 RYMRPLIEEGYIYIAQPPLYQIKQGKAVHYAFNEKEMERILGELSASPKPGL--QRYKGL 575 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 GEMN +QLWETT++P TR+LL+V + DA AD++F LMGD VEPRR+FIQEN+ L Sbjct: 576 GEMNPTQLWETTMDPATRTLLQVSLKDAMLADEVFETLMGDRVEPRRDFIQENAHYVKNL 635 Query: 802 DI 803 DI Sbjct: 636 DI 637 >gi|15639990|ref|NP_219443.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026229|ref|YP_001934001.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14] gi|3913790|sp|O08399|GYRB_TREPA RecName: Full=DNA gyrase subunit B gi|2102700|gb|AAB66715.1| DNA gyrase subunit B [Treponema pallidum] gi|3323330|gb|AAC65954.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018804|gb|ACD71422.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14] gi|291060363|gb|ADD73098.1| DNA gyrase, B subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 637 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 282/641 (43%), Positives = 406/641 (63%), Gaps = 14/641 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A SI +L+GL+AV+KRP MYIG T G +GLHH++YEV+DN IDE++ GY D ITV L Sbjct: 4 EYSASSITVLEGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNCIDEAMAGYCDRITVVL 62 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 V DNGRGIP D+H EG+SA EV++T+LHAGGKF++KSYKVSGGLHGVGVSVV Sbjct: 63 EQGNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV 122 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187 NALS W+++ + R+G Y F G+ P+ G GT + + IF + Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLAPVEKRG-VSEKRGTIIRWQADPSIFKETVAY 181 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 ++D L RLREL+FLNS+V I L D+R +++ ++GGI FVSYL+R K + + P Sbjct: 182 DFDVLLTRLRELAFLNSTVVIQLRDERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPERP 241 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + I+GS+ ++ +++A++++DGY ENV F N+I ++GGTHL G +SALTR +++KS Sbjct: 242 LYIEGSKSDVLVEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKS 301 Query: 308 FGSKKD---KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K + ++G+D R G T VLS+K+P+P+F QTK KL +SEVR +V+S V + L Sbjct: 302 PKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERL 361 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + E++P I++K + + R AARRA++ RRK +D LPGKLADCS +DP K Sbjct: 362 TLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAK 421 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK+GR + QAILPL GK+LNVE+ R DK+L ++++ +I LGTG Sbjct: 422 CEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTG 481 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 +G+D FD+ ++RYHK+IIM DADVDG+HIRTLLLTFFFR +P +I G++Y+ PPLY I Sbjct: 482 VGKD-FDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRI 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 K YV + ++ L + + G + L ++ + + Sbjct: 541 AWSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWET-----TMNPVRRK 595 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLAS-KLANRLN 643 +E + E + + + RL+ Sbjct: 596 MMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + K + + ++ V + Sbjct: 454 MLNVEKTRLDKVLHNEKLQPIIATLGTGVGKDFDLTRIRYHKVIIMADADVDGSHIRTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQRY 739 F F + I + + + + + ++ + + + SIG+K G+++QRY Sbjct: 514 LTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKSGVAVQRY 573 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+ +QLWETT+NP R +++V ++DA +AD +FS LMG++VEPRR+FI+EN++ + Sbjct: 574 KGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYA 633 Query: 800 ALDI 803 LD+ Sbjct: 634 RLDV 637 >gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus cereus] Length = 632 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGTQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKVLSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 150/449 (33%), Gaps = 51/449 (11%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY------ 605 ++ + +++ K + + L + D D I + Y Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 606 ---------PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 H + + + + N E + V ++ + I + Sbjct: 427 AGGSAKQGRDRHFQAIL--PLKGKIINVEKARLDKVLSNDEVRTIITAIGTNIGGDFDIE 484 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 ++ V + F + + I I L I G KI+ Sbjct: 485 KARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQY 543 Query: 717 TGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD Sbjct: 544 AYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEAD 603 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + F LMGD+VEPRR FIQEN+ LD Sbjct: 604 ETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|331693904|ref|YP_004330143.1| DNA gyrase subunit B [Pseudonocardia dioxanivorans CB1190] gi|326948593|gb|AEA22290.1| DNA gyrase, B subunit [Pseudonocardia dioxanivorans CB1190] Length = 660 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 271/640 (42%), Positives = 387/640 (60%), Gaps = 26/640 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GY Sbjct: 1 MAAE-KKNGYSASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + V L DG TV DNGRGIP +H E A E+++T LHAGGKF+ SY VSGGL Sbjct: 59 ADRVEVVLRPDGGVTVVDNGRGIPVGMHPVEKKPAVEMVLTMLHAGGKFDSDSYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS L + I +G + + + PL V G+ TGT VTF D Sbjct: 119 HGVGVSVVNALSSRLDVDIDTDGFHWSQKYTRSVP-GPL-VKGAPTRATGTTVTFWADPD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------EPREITMFY 225 IF +N +T++ RL+E++FLN + I L D+R+ + +E T Y Sbjct: 177 IFETTTYNVETVRRRLQEMAFLNKGLTIVLRDERNGDNGEAEEPDAEGYVAKIKEYTFHY 236 Query: 226 KGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 G+E FV++L++ K P+ + + G ++++AM+WN GY E+V F N I +G Sbjct: 237 PNGLEDFVAHLNKTKDPIHKKLVSFSGEAPGHALEVAMQWNSGYTESVYTFANTINTHEG 296 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH G R+ALT + Y K+ ++ GDD REG +++S+K+ +P+F QTK Sbjct: 297 GTHEEGFRAALTSTVNRYARDKKLLKEKDPALSGDDIREGLAAIVSVKVKEPQFEGQTKT 356 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++EV+S V+ N+ L+ W E +P EA+ IV K + ++ R AAR+AR+L RRK Sbjct: 357 KLGNTEVKSFVQRVSNEWLADWFERNPTEARTIVNKAVQSAQARMAARKARELVRRKSAG 416 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 DI LPGKLADC DP +SE+++VEGDSAGGSAK GR QAILP+RGKI+NVE+AR Sbjct: 417 DIGGLPGKLADCRSTDPSRSEVYIVEGDSAGGSAKSGRDSMFQAILPIRGKIINVEKARI 476 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 D++L + E+ ++ITALGTGI D FD+ KLRYHKI++M DADVDG HIRTLLLT FR M Sbjct: 477 DRVLKNTEVQSIITALGTGI-HDEFDLAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFM 535 Query: 526 PSLIHNGFLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 L+ +G +++ +PPLY I RG ++ + + + + + + Sbjct: 536 RPLVEHGHVFLAQPPLYKIKWGGRGAEPEFAYSDAERDGLIAAGRAAGKKLPKEEGVQRY 595 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + + + + ++ A + Sbjct: 596 KG---LGEMNAKELWETTMDPAHRVLLRVTLDDAATADEL 632 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 8/88 (9%) Query: 722 LLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ + G+K G +QRYKGLGEMNA +LWETT++P R LLRV + DA+ AD+L Sbjct: 575 LIAAGRAAGKKLPKEEG--VQRYKGLGEMNAKELWETTMDPAHRVLLRVTLDDAATADEL 632 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++VE RR FI N+ LD+ Sbjct: 633 FSVLMGEDVESRRSFITRNAKDVRFLDV 660 >gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2] gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2] Length = 636 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 303/591 (51%), Positives = 410/591 (69%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + SYDA IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L GY Sbjct: 1 MS--MNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTS-VKGLHHLVWEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV+DNGRGIP H + SA EV+MT LHAGGKF YKVSGGL Sbjct: 58 CNSIQVVVHKDNSITVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS + + +KR+G++YE + G + V G +TGT+ TF P Sbjct: 118 HGVGVSVVNALSSKMIVHVKRDGHVYEQEYHRGAPQYDVRVIGDTE-ETGTQTTFYPDEQ 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ ++YDTLQ R+REL+FLN + ISL D+R+ T Y+GGI +V +L++ Sbjct: 177 IFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGISEYVQFLNQK 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L + PI ++GSRD I +++A+++ND Y EN+ F NNI +GGTH SG +SALTR Sbjct: 235 REALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +LEE+P ++ +V K L A+ R+AAR+AR+LTRRK L+I+SLPGKLADCS Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++LSS EI +++T Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTGIG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +P Sbjct: 475 AMGTGIG-DDFDITKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+ + R K ++Y E ++ + + + G ++ L Sbjct: 534 PLFKVERNKVVRYANSEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWE 584 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 13/207 (6%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A + + + + + + ++ + + + + + K Sbjct: 440 RHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDITKARYHK------ 493 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 ++ V + F + K I + I + + N Sbjct: 494 -----VIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYAN 548 Query: 718 GPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + I G ++QRYKGLGEMNA+QLWETT++P++R++L+V ++DA AD L Sbjct: 549 SEAERDEIIKEFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTL 608 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F+ LMGD VEPRR+FIQE++ LD Sbjct: 609 FNTLMGDNVEPRRDFIQEHAKYVKNLD 635 >gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi] Length = 627 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSETFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 46/461 (9%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSETFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|224532514|ref|ZP_03673139.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23] gi|224512586|gb|EEF82962.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23] gi|312149421|gb|ADQ29492.1| DNA gyrase, B subunit [Borrelia burgdorferi N40] Length = 634 Score = 588 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 285/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F G+ + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGVPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K P Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis] Length = 627 Score = 588 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 284/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 87/461 (18%), Positives = 158/461 (34%), Gaps = 46/461 (9%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQ+N+ Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQKNAKY 627 >gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1] gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1] Length = 649 Score = 588 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 291/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE Sbjct: 1 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP + + G A E + T LHAGGKF YK Sbjct: 60 ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ ++G +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ +++D L R+REL+FLN + IS+ D+R + + Y+GGI+++V Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ +K + PI I+G + +I+++++M++ DGYH N+L F NNI +GGTH SG ++ Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDITVEVSMQYADGYHSNILSFANNIHTYEGGTHESGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 +LTR I Y K K++ + G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P K IV+K + AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ YV+ + E+ L + ++ + Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R + RV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11] gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11] Length = 649 Score = 588 bits (1517), Expect = e-165, Method: Composition-based stats. Identities = 290/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE Sbjct: 1 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP + + G A E + T LHAGGKF YK Sbjct: 60 ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ ++G +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ +++D L R+REL+FLN + IS+ D+R + + Y+GGI+++V Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ +K + P+ I+G + +I+++++M++ DGYH N+L F NNI +GGTH SG ++ Sbjct: 239 HLNANKDVIFPEPVFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 +LTR I Y K K++ + G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P K IV+K + AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ YV+ + E+ L + ++ + Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R + RV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis] Length = 627 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 284/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 5e-39, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 158/461 (34%), Gaps = 46/461 (9%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681] gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681] Length = 636 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 304/591 (51%), Positives = 411/591 (69%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + SYDA IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE+L GY Sbjct: 1 MS--MNQPSYDAGEIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV+DNGRGIP H + SA EV+MT LHAGGKF YKVSGGL Sbjct: 58 CDSIQVVVHEDNSVTVTDNGRGIPVSEHAKMKKSALEVVMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS + + +KR+G++YE + G + V G ++TGT+ TF P Sbjct: 118 HGVGVSVVNALSSKMIVHVKRDGHLYEQEYHRGAPQYDVRVIGDT-DETGTQTTFYPDDQ 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ ++YDTLQ R+REL+FLN + ISL D+R+ T Y+GGI +V +L++ Sbjct: 177 IFTETTVYDYDTLQTRIRELAFLNKGIAISLTDERTG--ASDTFHYEGGISEYVQFLNQK 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L + PI ++GSRD I +++A+++ND Y EN+ F NNI +GGTH SG +SALTR Sbjct: 235 REALHEQPIYVEGSRDMIQVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES Sbjct: 295 INDYARKNGLIKDNNANLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +LEE+P ++ +V K L A+ R+AAR+AR+LTRRK L+I+SLPGKLADCS Sbjct: 355 FAEKLQEFLEENPSVSRRVVDKSLQAARAREAARKARELTRRKSALEISSLPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++LSS EI +++T Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPIRGKILNVEKARLDRILSSDEIRSMVT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTGIG D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +P Sbjct: 475 AMGTGIG-DDFDIAKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+ + R K ++Y E ++ + + + G ++ L Sbjct: 534 PLFKVERNKVVRYANSEAERDEIIREFGENAKYNVQRYKGLGEMNATQLWE 584 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 13/207 (6%) Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +E+A + + + + + + ++ + + + + + K Sbjct: 440 RHFQAILPIRGKILNVEKARLDRILSSDEIRSMVTAMGTGIGDDFDIAKARYHK------ 493 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 ++ V + F + K I + I + + N Sbjct: 494 -----VIIMTDADVDGAHIRTLLLTFFYRYMRKIIDAGYIYIAQPPLFKVERNKVVRYAN 548 Query: 718 GPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + I G ++QRYKGLGEMNA+QLWETT++P++R++L+V ++DA AD L Sbjct: 549 SEAERDEIIREFGENAKYNVQRYKGLGEMNATQLWETTMDPESRTMLQVTVSDAMLADTL 608 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F+ LMGD VEPRR+FIQE++ LD Sbjct: 609 FNTLMGDNVEPRRDFIQEHAKYVKNLD 635 >gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104] gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22] gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2] gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200] gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3] gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8] gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5] gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96] gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704] gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1] gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol] gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1] gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6] gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188] gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis AR01/DG] gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98] gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712] gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613] gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1] gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248] gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855] gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134] gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860] gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109] gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411] gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470] gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635] gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512] gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102] gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516] gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis] gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX0104] gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22] gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2] gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200] gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3] gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8] gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5] gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96] gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704] gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1] gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol] gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1] gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6] gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188] gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG] gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98] gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712] gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613] gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1] gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76] gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411] gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109] gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860] gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134] gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855] gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248] gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512] gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102] gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635] gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516] gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470] gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137] gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000] gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017] gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027] gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141] gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244] gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012] gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031] gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043] gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312] gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645] gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302] gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341] gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342] gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346] gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B] gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630] gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A] gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62] gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus faecalis OG1RF] gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467] Length = 649 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 291/650 (44%), Positives = 419/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE Sbjct: 1 MTEEEKNMRERAQEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP + + G A E + T LHAGGKF YK Sbjct: 60 ALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ ++G +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ +++D L R+REL+FLN + IS+ D+R + + Y+GGI+++V Sbjct: 179 IPDPEIFTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ +K + PI I+G + +I+++++M++ DGYH N+L F NNI +GGTH SG ++ Sbjct: 239 HLNANKDVIFPEPIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 +LTR I Y K K++ + G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 SLTRVINDYARKQKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P K IV+K + AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEYFTKFLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSKDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ YV+ + E+ L + ++ + Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R + RV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469] Length = 644 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 298/653 (45%), Positives = 400/653 (61%), Gaps = 28/653 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S YDA +IQIL+ AV+KRP MYIG TD E GLHH+IYEV+DN+IDE+L GY I V Sbjct: 2 SKYDAKAIQILEDAQAVRKRPGMYIGSTD-ERGLHHLIYEVVDNSIDEALAGYCSRINVI 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ DGS +V D+GRGIP D+H E+G SA EV+MT LHAG KF++K+Y+++GGLHGVG+ V Sbjct: 61 IHKDGSVSVEDDGRGIPVDMHPEKGKSALEVVMTVLHAGAKFDKKAYRITGGLHGVGIHV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA----------------GNDTGT 171 VN LS WLK IKR+G IY + G + V G GT Sbjct: 121 VNFLSEWLKAYIKRDGKIYFQWYERGKPQCDVHVVGKIENGNFVWIEDGHDEKFKYSRGT 180 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 + F P ++IF +F Y ++ +LR+L+FLN ++I+L D+RS + Y GGI Sbjct: 181 YIRFKPDAEIFETTEFKYSIVKKKLRDLAFLNRGIEITLEDERSGKK--EVFKYDGGIVE 238 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV +L+ P+ + + + +D I ++ AM++ND EN+L F N I +GGTH+SG Sbjct: 239 FVKFLNEGYNPIHRDVVYGKDEQDGIIVEFAMQYNDSTSENLLAFVNTIHTVEGGTHVSG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 RSALT+ I + + K S+ G+D REG T+V+ +K P+P+F QTK KL +SE Sbjct: 299 FRSALTKVINDFAKSRNLLKGID-SLQGEDVREGLTAVIHVKHPNPQFEGQTKAKLGNSE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V+ VV S VN LS + EEHP A IV K + A+ R AAR+AR+L RRKG L+ LP Sbjct: 358 VKGVVFSIVNKILSTYFEEHPDVATNIVSKAIAAARARIAARKARELARRKGYLESLDLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCSE DP+++ELF+VEGDSAGGSAKQ R R QAILPLRGKILNVE+AR DK+ + Sbjct: 418 GKLADCSEEDPERAELFIVEGDSAGGSAKQARDRHFQAILPLRGKILNVEKARIDKVFKN 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI LI+A+GTG+ ++ FD +KLRY KIIIMTDADVDGAHIRTLLLTFF+R MP LI Sbjct: 478 NEIRALISAIGTGV-REDFDYSKLRYGKIIIMTDADVDGAHIRTLLLTFFYRYMPELIEK 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI + PLY I +GK++ YV +E E + L G ++ L + Sbjct: 537 GHIYIAQAPLYRIQKGKNIYYVYSDEEKE--EKLRELGNASVQRFKGLGEMNPQQLWDT- 593 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + + E + + E + +N Sbjct: 594 ----TMNPETRRLIRVTIEDAAEADRLFSILMGEQVGPRREFIIQHAKEVMNI 642 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 5/198 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + V +++ ++ I + + S ++ Sbjct: 451 RHFQAIL--PLRGKILNVEKARIDKVFKNNEIRALISAIGTGVREDFDYSKLRYGKIIIM 508 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I + + + + + + Sbjct: 509 TDADVDGAHIRTLLLTFFYRYMPELIEKGHIYIAQAPLYRIQKGKNIYYVYSDEEKEEKL 568 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 +G S+QR+KGLGEMN QLW+TT+NP+TR L+RV I DA++AD LFS LMG++V Sbjct: 569 RELG--NASVQRFKGLGEMNPQQLWDTTMNPETRRLIRVTIEDAAEADRLFSILMGEQVG 626 Query: 787 PRREFIQENSLPS-ALDI 803 PRREFI +++ +DI Sbjct: 627 PRREFIIQHAKEVMNIDI 644 >gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar sotto] Length = 632 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIARPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 92/468 (19%), Positives = 155/468 (33%), Gaps = 51/468 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IARPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|51598690|ref|YP_072878.1| DNA gyrase, subunit B [Borrelia garinii PBi] gi|51573261|gb|AAU07286.1| DNA gyrase, subunit B [Borrelia garinii PBi] Length = 634 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 285/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDRIDVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + I++ DKR+ + + +++GGI++FV YL K Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE II++K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 SSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + +F G ++ L +D + Sbjct: 539 RIYYFYDEKEKEKFLDSIETKNRNNIFLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R I +Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNNIFLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 284/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKAIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|300088450|ref|YP_003758972.1| DNA gyrase subunit B [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528183|gb|ADJ26651.1| DNA gyrase, B subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 641 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 298/588 (50%), Positives = 404/588 (68%), Gaps = 5/588 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +DN SSY A+ IQ+L G +AV+KRP MYIG TD GLHH++YEV+ N++DES+ G+ Sbjct: 7 TDNPGASSYTAEDIQVLGGREAVRKRPGMYIGSTDY-RGLHHLVYEVVYNSVDESMAGFC 65 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V ++ D S +V DNGRGIP D+ K+ G+SA E +MT LHAG KF K+Y+VSGGLH Sbjct: 66 DKINVIIHGDESISVEDNGRGIPVDIQKKTGVSALETVMTVLHAGAKFGGKTYQVSGGLH 125 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS W+ + ++R+G +Y + GI + P+ V G A TGT TF S I Sbjct: 126 GVGASVVNALSEWVTVDVRRDGKLYRQQYKEGIPEAPVAVVGEA-CGTGTTTTFKFDSKI 184 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F +++ TL R+RE+++LN ++IS+ D+R+ + + +GGI FV +L+ ++ Sbjct: 185 FDDATYDFKTLAERMREIAYLNKGLEISITDRRTDKEQTYYF--EGGITGFVRHLNHNRN 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + PI I D+ +++A+++NDG+ E F N I +DGGTHL+G RSALTR I Sbjct: 243 TIHRLPIAIYRKVDDCMVEVALQYNDGFSETNFSFANCINTQDGGTHLTGFRSALTRVIN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 YV K+ K S++GDDCREG S++S+K+P+P+F QTK KL ++E++S+VES V Sbjct: 303 DYVYKNKLVKDSDPSIMGDDCREGMVSIVSVKLPEPQFEGQTKGKLGNAEMKSMVESVVV 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D L+ + EEHP EAK I+ KVL ++ RDAAR+ARDL +K LD SLPGKLA+CSE++ Sbjct: 363 DQLALYFEEHPDEAKKIIDKVLTSARARDAARKARDLIIKKNSLDGGSLPGKLAECSEKE 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P ELFLVEGDSAGGSAKQGR+R QAILPLRGKILNVE+A DKMLS +EI +ITAL Sbjct: 423 PSLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKAAPDKMLSHEEIRAIITAL 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GI D FD KLRYH++++MTDADVDG+HIRTLLLTFFFR M LI NG LYI +PPL Sbjct: 483 GAGI-DDDFDFGKLRYHRVVMMTDADVDGSHIRTLLLTFFFRHMSKLITNGGLYIAQPPL 541 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 Y + +G++ ++V + ++ L G +S L + Sbjct: 542 YRVKQGQNERWVFSDAEKDEALKEFKGKSVDVQRYKGLGEMSAEQLWS 589 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 12/201 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + E + I +L + + + +F + + + Sbjct: 452 LPLRGKILNVEKAAPDKMLSHEEIRAIITALGAGIDDDFDFGKLRYHR-----------V 500 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F F K I + + + + ++ + Sbjct: 501 VMMTDADVDGSHIRTLLLTFFFRHMSKLITNGGLYIAQPPLYRVKQGQNERWVFSDAEKD 560 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + + K + +QRYKGLGEM+A QLW TT+NP TR++L V+I DA+ AD F+ LMGD Sbjct: 561 EALKEFKGKSVDVQRYKGLGEMSAEQLWSTTMNPATRTMLTVEIEDAAHADATFNLLMGD 620 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +V PR+ FIQ ++ LDI Sbjct: 621 QVPPRKAFIQAHAQQVKNLDI 641 >gi|166032886|ref|ZP_02235715.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC 27755] gi|166027243|gb|EDR46000.1| hypothetical protein DORFOR_02607 [Dorea formicigenerans ATCC 27755] Length = 643 Score = 588 bits (1516), Expect = e-165, Method: Composition-based stats. Identities = 299/591 (50%), Positives = 397/591 (67%), Gaps = 4/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ Sbjct: 1 MATEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S TV+DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CDTIHVTINPDNSVTVTDNGRGIPVGINHKSGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I EG +Y + G + L V G TGT+VTFLP Sbjct: 120 HGVGASVVNALSVWLEVEICHEGKVYRQRYERGKVAKKLEVIGECEPGKTGTKVTFLPDG 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F+Y LQ R RE++FL ++I L D+R EP E T Y+GGI+ FV YL+R Sbjct: 180 EIFETTIFDYSILQQRFREMAFLTKGLKIVLRDERPQEPIEKTFHYEGGIKEFVEYLNRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 PL + I +G +N+S+++AM+ ND Y+EN F NNI +GGTH+ G R+ALT+ Sbjct: 240 TTPLYEQIIYCEGIVNNVSVEVAMQHNDSYNENSYGFVNNITTPEGGTHIVGFRNALTKT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K+ K ++ ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ Sbjct: 300 FNDYARKNKLLKDNEPNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNV 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P AK+ V+K + A R+AAR+ARDLTRRK LD SLPGKLADCS+ Sbjct: 360 VSEQLQIFLEQNPQVAKVTVEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCSD 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P+K E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR D++ + EI +IT Sbjct: 420 KNPEKCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDRIYGNAEIKAMIT 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +P Sbjct: 480 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQP 538 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY + R K + Y +E L+ L G + L + Sbjct: 539 PLYKLERNKKVWYAYSDEELDSILQEVGRDNNNKIQRYKGLGEMDAEQLWD 589 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R + I+E Y L Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYK 542 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ LD+I + + +QRYKGLGEM+A QLW+TT++P+ R LLRV Sbjct: 543 LERNKKVWYAYSDEELDSILQEVGRDNNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRV 602 Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D AS+ D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 603 TMDDETASELDLTFTTLMGDKVEPRREFIEENAQYVQNLDI 643 >gi|78707349|gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularum] gi|78707351|gb|ABB46481.1| DNA gyrase subunit B [Acholeplasma granularum] gi|78707353|gb|ABB46482.1| DNA gyrase subunit B [Acholeplasma granularum] Length = 587 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 272/580 (46%), Positives = 379/580 (65%), Gaps = 6/580 (1%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 VKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD I + + V+DNGRGI Sbjct: 1 VKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADEINIEILKGNIVRVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D+H + G A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS + + I ++G Sbjct: 60 PVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEYFIVEIHKDG 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 IYE + GI L G +GT +TFL IF+ +N +TL++R+++L+FL Sbjct: 120 TIYEQRYERGIPAYDLKTIG-TTEKSGTVITFLADPKIFTETTVYNLETLKNRIQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N +++ L D R EP + Y+GGI +V +L++ K + I I +D I+++LA Sbjct: 179 NKGLKLHLTDSRPDEPIAESFHYEGGIVEYVKFLNQSKSKIHPDIIYIDKEQDGITVELA 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 +++ D Y N+ FTNNI +GG H G + ALTR I+ Y + S+ G+D Sbjct: 239 LQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDDSISGEDT 296 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T+++S+K P+P+F QTK KL + EVR++ ++ + +L E+P +AK+IV+K+ Sbjct: 297 REGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEAIERFLLENPQQAKMIVEKI 356 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 L A+ R AAR+A++LTRRK LD KLADC +DP+KSE+++VEGDSAGGSAKQG Sbjct: 357 LLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQG 416 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTGI D FDI K RYHKI+I Sbjct: 417 RDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-ADEFDITKARYHKIVI 475 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY ++ G++ +Y +E L + Sbjct: 476 MTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNEKYAYTDEELNEI 535 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + I+ + + ++ +D A + IK Sbjct: 536 VSGIETKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIK 575 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707 G + DI R + V ++G+ I + + R I+ Y+ L Sbjct: 457 TGIADEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 516 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + G K L+ I S S+QRYKGLGEMNA QLW+TT++P R+LL++K+ Sbjct: 517 VSWGRNEKYAYTDEELNEIVSGIETKPSIQRYKGLGEMNAEQLWDTTMDPAKRTLLQIKL 576 Query: 768 TDASQADDLFS 778 DA +AD +FS Sbjct: 577 EDAIEADQVFS 587 >gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree] gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree] Length = 637 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 301/591 (50%), Positives = 404/591 (68%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ ++REG+I++ F GI L + G D GT++ F P + Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTE-DHGTKIYFKPDIE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL RLREL+FLN ++ISL D+R + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVR +V++ V Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + ++LEE+P KII++K L AS R+AA+RAR+LTRRK VL+ SLPGKLADCS + Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PP Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV + L++ L+ + G ++ L + Sbjct: 535 LYRIFKAKKEIYVYSDPELDEALLELGGKDTNTNIQRYKGLGEMNPEQLWD 585 Score = 187 bits (474), Expect = 9e-45, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + I + + + +I + L + + +G K ++QR Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPELDEALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLW+TT+NP+ R+LL+V I DA AD++F+ LMG +VEPRREFI++N+ Sbjct: 572 YKGLGEMNPEQLWDTTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRREFIEDNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland] gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland] gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613] Length = 637 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 301/591 (50%), Positives = 402/591 (68%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ ++REG+I++ F GI L + G D GT++ F P + Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQRFERGITKTGLDIVGDTE-DHGTKIYFKPDIE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL RLREL+FLN ++ISL D+R + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVR +V++ V Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + ++LEE+P KII++K L AS R+AA+RAR+LTRRK VL+ SLPGKLADCS + Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PP Sbjct: 476 FGAGIGKE-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV + L+ L+ + G ++ L + Sbjct: 535 LYRIFKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWD 585 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIEKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + I + + + +I + L + +G K ++QR Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIFKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLW+TT++P+ R+LL+V I DA AD++F+ LMG +VEPRREFI+ N+ Sbjct: 572 YKGLGEMNPEQLWDTTMDPEHRTLLQVTIEDAMVADEIFTILMGTKVEPRREFIENNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|2338752|gb|AAB67237.1| DNA gyrase subunit B [Borrelia burgdorferi] Length = 634 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K P Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254] gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254] Length = 660 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 260/610 (42%), Positives = 377/610 (61%), Gaps = 30/610 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y A++I +L+GL+AV+KRP MYIG T GLHH+++E++DN++DE+L G D ITV Sbjct: 2 DNNYGAEAITVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSVDEALAGICDKITV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + VSDNGRGIP +H + G S EV++T LHAGGKF+ +YKVSGGLHGVGVS Sbjct: 61 KILEGNIIEVSDNGRGIPVGMH-KTGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185 VVNALS WL+ + R+G I+ ++ G+ +P+ G A + T GT V F +IF Sbjct: 120 VVNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDGTHGTVVRFKADDEIFETT 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYL-------- 236 ++Y L+ RL+EL++LN ++I L D+R+ E + ++GGI+ F++ + Sbjct: 180 VYDYSVLESRLKELAYLNKGLKIELADERNAENVKAEEFLFEGGIKDFLNEIIDEEKIID 239 Query: 237 ---DRHKKPLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIP 281 ++ ++ + +++AM + E V F NNI Sbjct: 240 DVIYMADTMQIEEAKEVEAEDENGNTVIKQRGAKFVEVEIAMNYTTSQRETVYSFVNNIN 299 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GGTH+SG R+ALTR I ++ K + G D REG V+S+K+P+P+F Sbjct: 300 THEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEG 359 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL +SEV +V + V L +LE+HP A+ I++K+ + R+AA++AR+L R Sbjct: 360 QTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKIIEKMAMSKRAREAAKKARELVLR 419 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 K L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R QAILPLRGKILNVE Sbjct: 420 KNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVE 479 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 ++ K L + EI +ITA G G G++ D+ KLRYHKI+IMTDADVDGAHIRTL+LTFF Sbjct: 480 KSGVHKALENAEIRAMITAFGAGFGEEM-DLKKLRYHKIVIMTDADVDGAHIRTLMLTFF 538 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSK 579 +R + LI+ G++YI +PPLY I GK+++Y ++ ++ Sbjct: 539 YRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLEGEGRKYTIQRYKGL 598 Query: 580 GVISKNDLRN 589 G ++ L Sbjct: 599 GEMNPEQLWE 608 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 2/79 (2%) Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + GRK ++QRYKGLGEMN QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+V Sbjct: 583 LEGEGRK-YTIQRYKGLGEMNPEQLWETTLDPEVRTLLKVSMEDASYADKMFNILMGDKV 641 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FI++N+ LDI Sbjct: 642 EPRRKFIEDNANYVRNLDI 660 >gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 284/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNN +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNTHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNTHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|216263495|ref|ZP_03435490.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1] gi|215980339|gb|EEC21160.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1] Length = 634 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 285/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVIDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ I R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGKEKSSKFYFEGGIKSFVDYLTNDSKAYQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGLINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 300 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLKII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE +I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + + + + G ++ L +D + Sbjct: 539 RIYYFYDEKEKEKFLNSIEAKNRNSILLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E I + + + N +N Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F + I + I + + + L++I + R I +Q Sbjct: 508 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLNSIEAKNRNSILLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|195942016|ref|ZP_03087398.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi 80a] gi|216264581|ref|ZP_03436573.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a] gi|218249329|ref|YP_002374947.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7] gi|221218016|ref|ZP_03589482.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a] gi|223888682|ref|ZP_03623273.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b] gi|224533655|ref|ZP_03674244.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a] gi|225548740|ref|ZP_03769787.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a] gi|225549469|ref|ZP_03770435.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a] gi|226321066|ref|ZP_03796608.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805] gi|226321745|ref|ZP_03797271.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26] gi|215981054|gb|EEC21861.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a] gi|218164517|gb|ACK74578.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7] gi|221191964|gb|EEE18185.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a] gi|223885498|gb|EEF56597.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b] gi|224513328|gb|EEF83690.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a] gi|225369746|gb|EEG99193.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a] gi|225370770|gb|EEH00206.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a] gi|226232934|gb|EEH31687.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26] gi|226233476|gb|EEH32215.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805] gi|312148462|gb|ADQ31121.1| DNA gyrase, B subunit [Borrelia burgdorferi JD1] Length = 634 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K P Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264] gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264] Length = 660 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 266/609 (43%), Positives = 377/609 (61%), Gaps = 30/609 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A++I++L+GL+AV+KRP MYIG T GLHH+++E++DN++DE+L G D I V Sbjct: 3 NNYGAENIKVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSVDEALAGVCDNIIVK 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D VSDNGRGIP H E G S EV+MT LHAGGKF+ +YKVSGGLHGVGVSV Sbjct: 62 ILKDNVIEVSDNGRGIPFATH-ETGKSTLEVVMTVLHAGGKFDNDNYKVSGGLHGVGVSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186 VNALS WL++ + R+G I ++ G + + G A + GT F +IF Sbjct: 121 VNALSEWLEVTVTRDGQIVRQTYKRGEPVSDVEKIGEASPEAHGTTTKFKADPEIFETTV 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSYLDRHKKP--- 242 + + L+ RL+EL++LN + I+LID+R E + ++GGI F++ + +K Sbjct: 181 YEFSVLESRLKELAYLNKGLTITLIDERDQEKIKEEKFLFEGGIIDFLNEIADEEKITDE 240 Query: 243 --LMQSPIRIQGSR------------------DNISIDLAMRWNDGYHENVLCFTNNIPQ 282 M ++ ++ + +++AM + ENV F NNI Sbjct: 241 VIYMSDTYEVEAAKEVEIVDDNGNTVKKMRAAKFVEVEIAMSYTISQRENVYSFVNNINT 300 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH+SG R+ALTR I ++ K + G D REG V+S+K+P+P+F Q Sbjct: 301 HEGGTHVSGFRTALTRTINDIAKQMNIVKDKDGTFQGTDVREGLVCVISVKIPEPQFEGQ 360 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL +SEV +V + V + L +LE+HP EA+ I++K+ + R+AA++AR+L RK Sbjct: 361 TKTKLGNSEVTGIVSNIVGNNLKFYLEDHPKEAEKIIEKMTMSKRAREAAKKARELVLRK 420 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R QAILPLRGKILNVE+ Sbjct: 421 NTLEVGSLPGKLADCSSKDPSESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVEK 480 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 + K+L + EI +ITA G G G D D+ KLRYHKIIIMTDADVDGAHIRTL+LTFF+ Sbjct: 481 SGMHKLLENAEIRAMITAFGAGFG-DDMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFY 539 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKG 580 RQ+ LI+ G++YI +PPLY + GK+++Y +E ++ G Sbjct: 540 RQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRRYTIQRYKGLG 599 Query: 581 VISKNDLRN 589 ++ L Sbjct: 600 EMNPEQLWE 608 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 8/121 (6%) Query: 691 RIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTI---FSIGRKGISMQRYKGLG 743 R I E Y+ L + G IK + I + ++QRYKGLG Sbjct: 540 RQLRELINEGYIYIAQPPLYKVQAGKAIKYAYSDEQMKKITSVLERDNRRYTIQRYKGLG 599 Query: 744 EMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 EMN QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+VEPRR+FI+EN+ LD Sbjct: 600 EMNPEQLWETTLDPEVRTLLKVTMEDASYADKMFNILMGDKVEPRRQFIEENANYVRNLD 659 Query: 803 I 803 + Sbjct: 660 V 660 >gi|229542310|ref|ZP_04431370.1| DNA gyrase, B subunit [Bacillus coagulans 36D1] gi|229326730|gb|EEN92405.1| DNA gyrase, B subunit [Bacillus coagulans 36D1] Length = 641 Score = 588 bits (1515), Expect = e-165, Method: Composition-based stats. Identities = 294/589 (49%), Positives = 410/589 (69%), Gaps = 5/589 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +Q SY A+ IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ D Sbjct: 4 EQLQKQSYGAEQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVWEIVDNSIDEALAGFCD 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S TV DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 63 EINVFIEKDNSITVKDNGRGIPVGIQEKVGRPAVEVIMTILHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L + + R+G+IY + G L + G + TGT F P +IF Sbjct: 123 VGASVVNALSTELDVYVHRDGHIYYQKYRRGKPAFDLKIIGET-DRTGTTTHFKPDPEIF 181 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F++D L RLREL+FLN ++I++ DKR PR+ Y+GGI+++V +L+R K+ Sbjct: 182 TETTEFDFDILTTRLRELAFLNKGIKITIEDKREKNPRKQEYHYEGGIKSYVEHLNRSKE 241 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + PI ++G +D I++++++++NDG+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 242 VLHKEPIYVEGEKDGITVEVSLQYNDGFASNIYSFANNIHTYEGGTHESGFKTALTRVIN 301 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K+++ ++ G+D REG T+++SIK PDP+F QTK KL ++E R++ ++ + Sbjct: 302 DYARKNNLIKENEANLTGEDVREGLTAIVSIKHPDPQFEGQTKTKLGNTEARTITDAVFS 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + ++ E+P A+ IV+K L A+ R AA++AR+LTRRK L+ SLPGKLADC+ RD Sbjct: 362 ETFEKFMMENPQVARKIVEKGLMAARARMAAKKARELTRRKSALESTSLPGKLADCTSRD 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P +SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ EI T+ITAL Sbjct: 422 PAESELYIVEGDSAGGSAKQGRDRMFQAILPLRGKILNVEKARLDKILSNAEIRTIITAL 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG+G+D FDI+K RYHK++IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PPL Sbjct: 482 GTGVGED-FDISKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIDAGYIYIAQPPL 540 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++YV + LE+ L + G ++ L Sbjct: 541 YKVQQGKRVEYVYSDRGLEELLNTLPAQPKPAIQRYKGLGEMNPEQLWE 589 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 8/188 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + + S +V V + Sbjct: 457 ILNVEKARLDKILSNAEIRTIITALGTGVGEDFDISKARYHKVVIMTDADVDGAHIRTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736 F + I + I L + G +++ G LL+T+ + + ++ Sbjct: 517 LTFFYRYMRPLIDAGYIY-IAQPPLYKVQQGKRVEYVYSDRGLEELLNTLPAQPK--PAI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT+ P R++L+V + DA +AD F LMGD+VEPRR FI+EN+ Sbjct: 574 QRYKGLGEMNPEQLWETTMEPANRTMLQVSLDDAIEADGTFEMLMGDKVEPRRNFIEENA 633 Query: 797 LPS-ALDI 803 + LDI Sbjct: 634 IYVKNLDI 641 >gi|300778803|ref|ZP_07088661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium gleum ATCC 35910] gi|300504313|gb|EFK35453.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium gleum ATCC 35910] Length = 644 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 278/595 (46%), Positives = 393/595 (66%), Gaps = 12/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y A SIQ L+G++ V+ RPSMYIGD G GLHH++YEV+DN+IDE+L GY D I Sbjct: 1 MSQKQYTASSIQALEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVVDNSIDEALAGYCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++ VSDNGRGIP D H++E SA EV+MT++ AGGKF++ SYKVSGGLHGVG Sbjct: 60 FVSIKEGNGIEVSDNGRGIPVDFHEKEQKSALEVVMTKIGAGGKFDKDSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VS VNALS+ + + R+GN+Y+ + G + G + GT+ F P IF+ Sbjct: 120 VSCVNALSNEMITTVYRDGNVYQQIYSRGKAQTGVEEIGHSE-RRGTKQFFQPDDTIFTE 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGIEAFVSYLDRHK 240 +NYDTL RLRELS+LN + I+L D+R R +GG++ FV+Y+D ++ Sbjct: 179 LVYNYDTLASRLRELSYLNKGITITLTDEREKLEDGSFRSEVFHSEGGLKEFVAYIDGNR 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +M+ I ++G RD+I +++AMR+N ++EN+ + NNI +GGTHL+G R ALTR + Sbjct: 239 ESIMEHVIFMEGERDDIPVEVAMRYNTSFNENLHSYVNNINTHEGGTHLAGFRRALTRTL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + +K+K V GDD REG T+V+S+K+ +P+F QTK KL +SEV V+ V Sbjct: 299 KKYADDLGIPQKEKVEVTGDDFREGLTAVVSVKVMEPQFEGQTKTKLGNSEVSGAVDKIV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LEE+P EAK IV+KV+ A+ R AA++AR++ +RK + + LPGKL+DCS + Sbjct: 359 GEMLTNFLEENPNEAKQIVQKVVLAAKARQAAKKAREMVQRKSPMGGSGLPGKLSDCSSK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SE+FLVEGDSAGG+AKQGR R QAILPLRGKILNVE++ K+ ++EI + TA Sbjct: 419 DPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIRNIYTA 478 Query: 481 LGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LG +G + +KLRYHKI+IMTDAD+DG+HI TL+LTFFFR M LI NG++YI Sbjct: 479 LGVSVGTEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYMKELIENGYIYI 538 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 +PPLY + +G Y +E+ E++ + S + G ++ L Sbjct: 539 AQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKGVEVQRYKGLGEMNPEQLWE 593 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 8/236 (3%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + +S+ + + D + +E++++ V++ E + Sbjct: 414 DCSSKDPAESEIFLVEGDSAGGTAKQGRDRHFQAILPLRGKILNVEKSMLHKVYDNEEIR 473 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 I +L + E+ K+ + S +V + + F F Sbjct: 474 NIYTALGVSVG------TEEDSKALNLSKLRYHKIVIMTDADIDGSHISTLILTFFFRYM 527 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG--RKGISMQRYKGLGEMN 746 + I + I + L K+ + + KG+ +QRYKGLGEMN Sbjct: 528 KELIENGYIYIAQPPLYLLKKGNKKVYAYNEKEREEFTLEMSPDGKGVEVQRYKGLGEMN 587 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 QLWETTLNP+ R L +V I +A +AD +FS LMGDEV PRREFI++N+ + +D Sbjct: 588 PEQLWETTLNPEHRILKQVTIDNAVEADSIFSMLMGDEVPPRREFIEKNAKYAKID 643 >gi|224534805|ref|ZP_03675377.1| DNA gyrase, B subunit [Borrelia spielmanii A14S] gi|224514053|gb|EEF84375.1| DNA gyrase, B subunit [Borrelia spielmanii A14S] Length = 639 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 7 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 66 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ I R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 126 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGES-VITGTKVTFLADSEIFETLDYN 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ D+R + + +++GGI++FV YL + K Sbjct: 185 FDVLEKRLKELAFLNDKIYISIEDRRFGKEKSSKFYFEGGIKSFVDYLTNNSKAYQSESY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 245 YIDGFMNDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 305 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEVIVYEHLLKII 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 NLNPLEIDIILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 425 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 485 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 543 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + +F G ++ L +D + Sbjct: 544 RIYYFYDEKEKEKFLDSIETKNRNSIFLQRYKGLGEMNPTQLWET-----TMDPARRKMR 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E I + + + N +N Sbjct: 599 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 637 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F + I + I + + + LD+I + R I +Q Sbjct: 513 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLDSIETKNRNSIFLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 573 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 632 Query: 798 PS-ALDI 803 LD+ Sbjct: 633 NVINLDV 639 >gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar seoulensis] Length = 632 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 283/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGG AKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGCAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR FIQEN+ LD Sbjct: 614 VEPRRNFIQENAKYVKNLD 632 >gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar fukuokaensis] Length = 632 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV++RP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRERPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L L + G +S L Sbjct: 537 QGKKIQYAYNDKELEKILAELPALPKPGIQRYKGLGEMSPTQLWE 581 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 154/468 (32%), Gaps = 51/468 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + +QRYKGLGEM+ +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPALPKPGIQRYKGLGEMSPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 627 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTALHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2] gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2] Length = 649 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 294/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ ++ YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEEKSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFATAIQVIIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ +EG +Y + G + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVFKEGKVYYQEYHRGAVVEDLKVIGET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ FN+D L R+REL+FLN ++IS+ DKR P Y GGI+++V Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEHPVLKEYHYDGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + PI ++G + I++++++++ D YH N+L F NNI +GGTH SG ++ Sbjct: 239 HLNASKTVIFPEPIYLEGEQQGITVEVSLQYTDSYHNNLLSFANNIHTYEGGTHESGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y KS K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P + +V+K L AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEHFTKFLMENPAVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ Y++ ++ E L N S + ++ + Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R +LRV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] Length = 632 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 288/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKMVEKGTMAARARVAAKKARELTRRKRALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 134/367 (36%), Gaps = 33/367 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ ++ + +++ Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKMVEKGTMAARARVAAKK 386 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 387 ARELTRRKRALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678 + + RL+ I E + + DI R + V + Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L I G KI+ L+ I + + + Sbjct: 507 LLLTFFYRYMRQIIEHGYIY-IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGI 565 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625 Query: 797 LPS-ALD 802 LD Sbjct: 626 KYVKNLD 632 >gi|15594781|ref|NP_212570.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31] gi|3915725|sp|P33769|GYRB_BORBU RecName: Full=DNA gyrase subunit B gi|2688337|gb|AAC66802.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31] Length = 639 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 417/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 7 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 66 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 126 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K P Sbjct: 185 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 245 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 305 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 425 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 485 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 543 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 544 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 599 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 637 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 513 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 573 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 632 Query: 798 PS-ALDI 803 LD+ Sbjct: 633 NVINLDV 639 >gi|300711735|ref|YP_003737549.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus jeotgali B3] gi|299125418|gb|ADJ15757.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus jeotgali B3] Length = 635 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 394/591 (66%), Gaps = 10/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ S Y A IQ+L+GL+AV+ RP+MYIG TD GLHH++YEV+DNAIDE+L GY Sbjct: 1 MSEQ---SEYGAGQIQVLEGLEAVRTRPAMYIGSTDS-RGLHHLVYEVVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ DGS +V+D+GRGIP D H E A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDTIGVTIHEDGSVSVADDGRGIPVDTHAEYDRPAVEVIMTVLHAGGKFDSKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPS 178 HGVGVSVVNALS L++ I+R+G ++ F +G + + A +TGT V F P Sbjct: 117 HGVGVSVVNALSERLEVEIRRDGAVWHHRFDHGAPEGDIERVRDLEAEEETGTTVRFWPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++F TL++R+REL+FLN V+I+L D+R T Y GGI FV YL+ Sbjct: 177 DGIFEDREFVVSTLENRIRELAFLNPGVEITLADERDETES--TFQYDGGIREFVEYLNE 234 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + PL + + + NI +++AM+ D ++ F NNI ++GGTHL+G ++ALTR Sbjct: 235 TRTPLHEDVLYLDDEERNIQVEVAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y + ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR +VES Sbjct: 295 VVNDYANGEGLLDEIDENLRGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++GL + EEHP A+ +V+K ++A+ R AA++A +LTRRK L+ +LPGKLADC Sbjct: 355 AVHEGLGTYFEEHPDTAQAVVRKAVEAAKARKAAKQAEELTRRKSALESTALPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP ++ELF+VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ R D++L + EI LI Sbjct: 415 TRDPNEAELFVVEGDSAGGSAKQGRNRKFQAILPLKGKILNVEKHRLDRILENNEIRDLI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G G+G++ FDI++ RY +I+IMTDADVDGAHIRTLLLT F+R M LI G++Y + Sbjct: 475 TAVGAGVGEE-FDIDEARYKRIVIMTDADVDGAHIRTLLLTLFYRHMRPLIEAGYVYAAQ 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + G + E E + + + G ++ + L Sbjct: 534 PPLYRLRYGGETREAMAEAEREAIIDEYG-APDRIQRFKGLGEMNPDQLWE 583 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN QLWETT+NPD R L RV + DA+ AD +FS LMGD VEPR++FIQE+ Sbjct: 567 IQRFKGLGEMNPDQLWETTMNPDNRVLKRVTVEDAAAADRMFSVLMGDAVEPRKQFIQEH 626 Query: 796 SLPSA-LDI 803 + + +DI Sbjct: 627 AKEAEWVDI 635 >gi|111115263|ref|YP_709881.1| DNA gyrase, subunit B [Borrelia afzelii PKo] gi|110890537|gb|ABH01705.1| DNA gyrase, subunit B [Borrelia afzelii PKo] Length = 634 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 285/639 (44%), Positives = 418/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVIDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ I R+G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEVVGESSI-TGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGKEKSSKFYFEGGIKSFVDYLTNDSKAYQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGLMNDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 300 ISKKDVPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLKII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE +I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDLILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRELIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + + + + G ++ L +D + Sbjct: 539 RIYYFYDEKEKEKFLNSIETKNRNSILLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E I + + + N +N Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F + I + I + + + L++I + R I +Q Sbjct: 508 LAFFFRYMRELIENGYIYIAMPPLYKIKYDNRIYYFYDEKEKEKFLNSIETKNRNSILLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|326802621|ref|YP_004320439.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 660 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 281/587 (47%), Positives = 395/587 (67%), Gaps = 5/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 Q Y+A IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L GYAD I Sbjct: 26 NQAGEYNASQIQVLEGLEAVRKRPGMYIGST-GAPGLHHLVWEIVDNSIDEALAGYADKI 84 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + + DGS TV DNGRGIP D+ ++ G A E + T LHAGGKF YKVSGGLHGVG Sbjct: 85 DIKIESDGSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVG 144 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 SVVNALS+ L++ + R+G IY+ + G + + L V G + + TGT V F+ +IF Sbjct: 145 ASVVNALSTKLRVEVYRDGKIYQQEYSRGHIVSDLKVVGES-DKTGTVVNFVADPEIFTD 203 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 D+++ TL R+REL+FLN + I+L D+R + +E+ Y+GGI+ +V YL+ +K+ L Sbjct: 204 TTDYDFQTLNKRVRELAFLNKGLHITLEDRREEDSQEVAYQYEGGIKEYVQYLNENKEIL 263 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + P+ ++G D+I +++A ++ GYH N + F NNI +GGTH SG+++ALTR I Y Sbjct: 264 FEEPVYLEGQMDDIEVEVAFQYTAGYHSNFMSFANNIHTFEGGTHESGIKTALTRTINDY 323 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ ++ G+D REG T ++SI+ P+P+F QTK KL +SEVR++ + Sbjct: 324 ARSQNLLKEKDDNLSGEDVREGLTLIVSIRHPNPQFEGQTKMKLGNSEVRTITDRLFGQH 383 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E P A+ IV K + AS R AA+RAR++TR+K L+I++LPGKLADCS R P+ Sbjct: 384 LEQFLYETPNIARQIVDKGILASKARQAAKRAREMTRKKSGLEISNLPGKLADCSSRVPE 443 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + ELF+VEG+SAGGSAK GR R QAILP+RGKILNVE+A D++L+++EI +L TA+GT Sbjct: 444 ECELFIVEGNSAGGSAKLGRDRHFQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGT 503 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G G D FD+ K RYHK++IMTDADVDGAHIRTLLLT +R M L+ G++YI PPLY Sbjct: 504 GWGND-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYIYIAVPPLYQ 562 Query: 544 ITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589 + +GK++ YV ++ L DY+ G + L Sbjct: 563 VRQGKNVHYVNSDQELNDYMKTLAERPRPAVQRYKGLGEMDAEQLWE 609 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 3/125 (2%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK-GISMQ 737 + + +Y R + I + + + + L D + ++ + ++Q Sbjct: 535 LLLTLIYRYMRPLLDAGYIYIAVPPLYQVRQGKNVHYVNSDQELNDYMKTLAERPRPAVQ 594 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEM+A QLWETT++P R +L+V + DA +AD S LMGD V PRR+FI+ N+ Sbjct: 595 RYKGLGEMDAEQLWETTMDPTQRQMLQVTVDDAQEADRNISMLMGDLVAPRRDFIENNAT 654 Query: 798 PSALD 802 + +D Sbjct: 655 YATID 659 >gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar bolivia] Length = 632 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 288/585 (49%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIYE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 135/367 (36%), Gaps = 33/367 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ +I+ + +++ Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678 + + RL+ I E + + DI R + V + Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L I G KI+ L+ I + + + Sbjct: 507 LLLTFFYRYMRQIIEHGYIY-IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGI 565 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625 Query: 797 LPS-ALD 802 LD Sbjct: 626 KYVKNLD 632 >gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] Length = 642 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 293/589 (49%), Positives = 409/589 (69%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +Q SYD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 6 KAVQEQSYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCS 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 65 EINVIIEKDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G Y F G+ L V G + TGT + F P S+IF Sbjct: 125 VGASVVNALSTVLEVFVHRDGQKYYQKFERGVPSADLEVIGETDH-TGTTIHFKPDSEIF 183 Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + +++Y+TL +R+REL+FLN ++I++ DKR + Y+GGI+++V +L+R K+ Sbjct: 184 TETLEYDYETLANRIRELAFLNRGLKITIEDKREENKKSE-YMYEGGIKSYVEHLNRTKE 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + PI I G R+ I++++++++NDG+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 243 VLHEEPIYIDGEREGITVEVSIQYNDGFTSNIYSFANNIHTYEGGTHESGFKTALTRVIN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K+ ++ G+D REG T+++S+K PDP+F QTK KL +SEVR+ ++ + Sbjct: 303 DYARKNGVFKESDANLSGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVRAATDTIFS 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L ++ E+P A+ IV+K L A+ R AA++AR+LTRRK L+++SLPGKLADCS +D Sbjct: 363 EALEKFMLENPTVARKIVEKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSKD 422 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+LS+ E+ +ITA+ Sbjct: 423 PSISELYVVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRAIITAI 482 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D FDI++ RYHKI+IMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 483 GTGIGED-FDISRARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPL 541 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 Y I +GK ++Y ++ L+ L + G ++ L Sbjct: 542 YKIQQGKKIEYAYNDRELDKILGELPSQPKPGIQRYKGLGEMNPGQLWE 590 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + I + + S +V Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRAIITAIGTGIGEDFDISRARYHKIVIM 503 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I + I L I G KI+ LD I Sbjct: 504 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYKIQQGKKIEYAYNDRELDKI 562 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + +QRYKGLGEMN QLWETT+NP++R+LL+V + DA +AD+ F LMGD+ Sbjct: 563 LGELPSQPKPGIQRYKGLGEMNPGQLWETTMNPESRTLLQVNLEDAIEADETFEILMGDK 622 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FI+EN++ LDI Sbjct: 623 VEPRRNFIEENAVYVKNLDI 642 >gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar vazensis] gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 282/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + G+ L V G + TGT F P S+IF+ Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR FIQEN+ LD Sbjct: 614 VEPRRNFIQENAKYVKNLD 632 >gi|328949382|ref|YP_004366719.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489] gi|328449706|gb|AEB15422.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489] Length = 641 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 277/595 (46%), Positives = 392/595 (65%), Gaps = 11/595 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ +N+ Y A SIQ+LKGL+AV+KRP MYIG T G +GLHH++YEV+DN+IDE++ GY Sbjct: 1 MSE--ENNQYGAGSIQVLKGLEAVRKRPGMYIGST-GPNGLHHLVYEVVDNSIDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 ITV L D C V DNGRGIP D+H E ISA E+++TRLHAGGKF++ +YKVSGGL Sbjct: 58 CTQITVALEKDDICRVEDNGRGIPVDIHPTEHISALELVLTRLHAGGKFDKSNYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS W++ + ++G Y + GI + + G GT + + + Sbjct: 118 HGVGVSCVNALSVWMEAFVNKDGKRYHQKYAEGIPKSKVECIGDTE-LHGTTIRWKADAS 176 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +N+D L RLREL+FLN + I D+R P+E+ ++GGI+ +VSYL+ Sbjct: 177 IFTETTTYNFDVLSTRLRELAFLNPGITIIFRDERLENPKEVVFKFEGGIKHYVSYLNEG 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK + + PI I G +++ I+LAM++ND Y EN+ + N+I ++GGTHL G + ALT Sbjct: 237 KKIIPEEPIYINGEENDVIIELAMQYNDSYSENIFSYVNDINTREGGTHLDGFKIALTVV 296 Query: 300 ITSYVEKSFGS---KKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 + ++EK+ + GDD R G T++LS+K+P+P+F QTK KL +SEVR V Sbjct: 297 LNKFLEKNEKLLKKLDKDEKLTGDDVRVGLTAILSLKIPEPQFEGQTKTKLGNSEVRGYV 356 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +S V + L+ + E++P +I++K + + R AAR+A+D RRK +D LPGKL+D Sbjct: 357 DSLVKEKLTLFCEQNPQITTMILEKAVGEAAARIAARKAKDSARRKNNIDSFGLPGKLSD 416 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS ++ + E+++VEGDSAGGSAK+GR + QAILPL GK+LNVE+ R DK+++++++ Sbjct: 417 CSSKNAAECEVYIVEGDSAGGSAKKGRDAKTQAILPLWGKMLNVEKVRADKVVNNEKLQP 476 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +LG G G+D F+I KLRYHKIIIM DADVDG+HIRTLLLTFFFR MP LI G++Y+ Sbjct: 477 VIASLGAGFGKD-FNIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMPDLIEKGYVYL 535 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589 PPL+ I GK YV +E + L + G + N L + Sbjct: 536 AMPPLFKIEIGKQKIYVYSDEERDAELEKLGDKREKADVQRYKGLGEMDGNQLWD 590 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + K ++ ++ V + Sbjct: 457 MLNVEKVRADKVVNNEKLQPVIASLGAGFGKDFNIEKLRYHKIIIMADADVDGSHIRTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F F I + + + KI + + +G K +QR Sbjct: 517 LTFFFRYMPDLIEKGYVYLAMPPLFKIEIGKQKIYVYSDEERDAELEKLGDKREKADVQR 576 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ +QLW+TT+NP+TR + V I DA AD +FS MG+EVEPRR+FI+EN++ Sbjct: 577 YKGLGEMDGNQLWDTTMNPETRRMKVVTIPDAVAADRIFSICMGEEVEPRRKFIEENAVY 636 Query: 799 SALDI 803 + LD+ Sbjct: 637 ANLDV 641 >gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar graciosensis] Length = 632 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++ ++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWGIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGET-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|1209515|gb|AAC43643.1| gyrase B [Mycoplasma pneumoniae] Length = 637 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 265/601 (44%), Positives = 380/601 (63%), Gaps = 15/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M DN + +YD+ SI+IL+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+ Sbjct: 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGST-GEEGLHHMIWEIIDNSIDEAMGGF 59 Query: 61 ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A + +TL D T V D+GRGIP D+H + S E + T LHAGGKF+ SYKVSGG Sbjct: 60 ASTVKLTL-KDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS K+ + RE Y ++F N G + LV G + GT+V F+P Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + D+ + RL++L+FLN +QI +D+R P+ + Y GG+ ++ +L+ Sbjct: 179 FTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNN 238 Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 K+PL + I + I +++A ++N Y++++ F NNI +GGTH Sbjct: 239 EKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + G R+AL + I + ++ K+ + DD EG T+++SIK P+P++ QTK+KL Sbjct: 299 VEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V S V++ ++ E+P EA I++K L A R ++ AR+LTRRK D Sbjct: 359 NTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADC+ RDP SEL++VEGDSAGG+AK GR R QAILPLRGKILNVE++ F+++ Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQI 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ++ EI L+ A+G GI + F++ KLRY+KIIIMTDADVDGAHIRTLLLTFFFR M L Sbjct: 479 FNNVEISALVMAVGCGI-KPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPL 537 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 + G +YI +PPLY ++ Y++ + LE++ + G + L Sbjct: 538 VEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLW 597 Query: 589 N 589 Sbjct: 598 E 598 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 39/58 (67%), Positives = 47/58 (81%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 ++QRYKGLGEM+A QLWETT++P R+LL+V + DAS AD FS LMGDEV PRREF Sbjct: 580 YNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREF 637 >gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 281/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + G+ L V G + TGT F P S+IF+ Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DT R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR FIQEN+ LD Sbjct: 614 VEPRRNFIQENAKYVKNLD 632 >gi|260891935|ref|YP_003238032.1| DNA gyrase, B subunit [Ammonifex degensii KC4] gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4] Length = 636 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 300/587 (51%), Positives = 397/587 (67%), Gaps = 6/587 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A SIQIL+GL+AV++RP MYIG T G GLHH++YEV+DN+IDE+L G+ Sbjct: 4 EEKEREEYRASSIQILEGLEAVRRRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGFCT 62 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S V DNGRGIP D+H + G A EV++T LHAGGKF YKVSGGLHG Sbjct: 63 EIEVVIKQDNSVLVKDNGRGIPVDIHPQAGRPAVEVVLTTLHAGGKFGGGGYKVSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS WL++ + REG I+ F G L G + TGT V F P IF Sbjct: 123 VGVSVVNALSEWLEVEVHREGRIWRQRFERGRPVTDLEAIGET-DRTGTTVHFKPDHQIF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+ D L RLRELSFL V+I L D+R+ E +KGG+ FV +L+R ++ Sbjct: 182 EEVVFSQDYLTQRLRELSFLVPEVRIVLRDERTGEEF--VFHHKGGLRDFVRHLNRAREV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L PI + G R+ + ++ A++++DGY E++ + N I DGGTH +G ++ALTR + Sbjct: 240 LHPDPIYLAGEREGMVVEAALQYHDGYAESIFSYANTIRTVDGGTHEAGFKAALTRVVND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + + + G+D REG T+V+++K+PDP+F QTK KL +++VR VVES V + Sbjct: 300 YGRRHGIIP-ENFQLAGEDVREGLTAVVAVKVPDPQFEGQTKTKLGNTQVRRVVESIVGE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 GL+++ EE+P A++IV+K L A+ R+AARRAR+L RRKG+L+ SLPGKLADCSERDP Sbjct: 359 GLASFFEENPSIARLIVEKALAAARAREAARRARELARRKGLLESTSLPGKLADCSERDP 418 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+EL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L+++EI LITA+G Sbjct: 419 AKTELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILANEEIKALITAIG 478 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D D+ K+RYHK+IIMTDADVDGAHIRTLLLTFFFR M LI G++YI +PPLY Sbjct: 479 AGIGEDL-DLKKVRYHKLIIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLY 537 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +GK Y ++ LE L + G ++ L Sbjct: 538 RVRKGKESFYAYNDAELEKLLSTLGRNGVTIQRYKGLGEMNAEQLWE 584 Score = 183 bits (465), Expect = 9e-44, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 12/201 (5%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + E + + ++ + + L+ + K L Sbjct: 447 LPLRGKILNVEKARLDKILANEEIKALITAIGAGIGEDLDLKKVRYHK-----------L 495 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + V + F F I + + + + + L Sbjct: 496 IIMTDADVDGAHIRTLLLTFFFRYMRPLIEAGYVYIAQPPLYRVRKGKESFYAYNDAELE 555 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + ++GR G+++QRYKGLGEMNA QLWETT+NP+ R +L+V + DA AD+LFS LMGD Sbjct: 556 KLLSTLGRNGVTIQRYKGLGEMNAEQLWETTMNPEKRVILQVTLEDAVAADELFSTLMGD 615 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRREFI + LDI Sbjct: 616 KVEPRREFISRYARYVRNLDI 636 >gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC 15579] gi|187774290|gb|EDU38092.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC 15579] Length = 637 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS + ++R+G+I+ + GI L + G D GT++ F P + Sbjct: 119 HGVGASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTE-DHGTKIYFKPDVE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL RLREL+FLN ++ISL D+R + + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAQRLRELAFLNKGIKISLTDERYDK--QEMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVR +V++ V Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + ++LEE+P KII++K L AS R+AA+RAR+LTRRK VL+ SLPGKLADCS + Sbjct: 356 GESIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ F++ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PP Sbjct: 476 FGAGIGKE-FNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV ++ L++ L+ + G + L Sbjct: 535 LYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQRYKGLGEMDPEQLWE 585 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K ++ + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + + + + + ++ + L + + +G K ++QR Sbjct: 512 LTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEM+ QLWETT+NP+ R+LL+V I DA AD++F+ LMG +VEPRR+FI+ N+ Sbjct: 572 YKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRRDFIENNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar ostriniae] Length = 632 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 283/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GL+H+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLYHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L ++ G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKLGIQRYKGLGEMNPTQLWE 581 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 161/466 (34%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKLGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|117927216|ref|YP_871767.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B] gi|117647679|gb|ABK51781.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B] Length = 666 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 281/600 (46%), Positives = 381/600 (63%), Gaps = 24/600 (4%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D + SSYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+L Sbjct: 1 MTDQALSLDASSYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G D I VTL DG V DNGRGIP D H E A EV++T LHAG KF + YKVS Sbjct: 60 AGACDRIDVTLLADGGVRVVDNGRGIPVDEHPGEKRPAVEVVLTVLHAGAKFGGRGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVGVSVVNALS L + + R+G ++ S+ G PL G + TGT VTF P Sbjct: 120 GGLHGVGVSVVNALSERLDVEVHRDGYVWRQSYRRGTPTGPLQR-GEPTDRTGTTVTFWP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------REIT 222 +IF F+++TL +RLRE++FLN + I+L D+R E E+ Sbjct: 179 DPEIFETTRFSFETLANRLREIAFLNKGLTITLRDERPAEHLDSDDAEKPAGGDDPTEVY 238 Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNI 280 Y GG+ +V++L+ K+P +S I + ++S++ A++WN GY E+V F N I Sbjct: 239 YRYDGGLVDYVAHLNATKEPAHRSIISFEAHDPVSDMSLEAALQWNTGYTESVHTFANTI 298 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT + + E+ KK + + G+D REG T++LSIK+ +P+F Sbjct: 299 NTHEGGTHEEGFRAALTYLVNKFGEEWNLIKKKEDRLTGEDIREGLTAILSIKLKEPQFE 358 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LT 399 QTK KL ++EV+S V++ ND L W E++P E K IV+K + A+ R AAR+ARD Sbjct: 359 GQTKTKLGNTEVKSFVQTVCNDRLGEWFEKNPAEGKDIVRKAIQAATARIAARKARDLAR 418 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RKG+L LPGKL DC +P++ ELF+VEGDSAGGSA+QGR QA+LP+RGKILN Sbjct: 419 NRKGLLGGGGLPGKLVDCQSTNPEECELFIVEGDSAGGSARQGRDPRTQAVLPIRGKILN 478 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VERAR DK+L + E+ +I+ALGTG+ D FD+ +LRYHK+++M DADVDG HIRTLLLT Sbjct: 479 VERARIDKVLQNNEVQAVISALGTGV-HDDFDLARLRYHKVVLMADADVDGQHIRTLLLT 537 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M L+ G +Y+ +PPLY I + + D L+ L+ +L + Sbjct: 538 LLFRFMKPLVEAGHVYLAQPPLYRIKWSNAPHEFAYSDRERDGLVEAGLAAGKKLPKEQG 597 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%) Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L++ + G+K +QRYKGLGEMN +LW TT++P R LL+V + DA++AD++FS Sbjct: 581 LVEAGLAAGKKLPKEQGIQRYKGLGEMNPEELWTTTMDPAQRVLLQVSLDDAARADEIFS 640 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+VE RR FIQ N+ LDI Sbjct: 641 ILMGDDVEQRRAFIQRNAKDVRFLDI 666 >gi|225552337|ref|ZP_03773277.1| DNA gyrase, B subunit [Borrelia sp. SV1] gi|225371335|gb|EEH00765.1| DNA gyrase, B subunit [Borrelia sp. SV1] Length = 634 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 284/639 (44%), Positives = 414/639 (64%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + + G + TGT VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEIVGESSI-TGTRVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ D+R + + +++GGI++FV YL K P Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDRRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSQPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNGISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R GIS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNGISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar wratislaviensis] Length = 632 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 284/589 (48%), Positives = 403/589 (68%), Gaps = 6/589 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A E IMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEAIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593 +GK +QY +++ LE L + G ++ L D Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMD 585 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 89/466 (19%), Positives = 159/466 (34%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWET ++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETAMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar roskildiensis] Length = 632 Score = 586 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPIGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+ Y ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNERYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 93/469 (19%), Positives = 159/469 (33%), Gaps = 53/469 (11%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAG---GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 VEG G A Q R I ++ G Sbjct: 241 YVEGSKDGIQVEVALQYNERYTNHIY----------------SFTNNIHTYEGGTHEVGF 284 Query: 486 GQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------I 537 + K I+ DAD + G +R L + P+ G Sbjct: 285 KTALTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEA 344 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRN 589 + + +++ + ++ +I+ + +++ K + + L Sbjct: 345 RTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPG 404 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + D D I + Y + A + ++ + + + RL+ I Sbjct: 405 KLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSND 464 Query: 650 EKSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNR 696 E + + DI R + V + F + + I Sbjct: 465 EVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGY 524 Query: 697 IEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETT 754 I L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT Sbjct: 525 IY-IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETT 583 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 ++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 584 MDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus italicus DSM 15952] gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus italicus DSM 15952] Length = 649 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ ++ YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEEKSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV+D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFATKIEVVVEKDNSITVTDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ +EG +Y + G + + L + G + GTEV F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVFKEGKVYFQEYHRGAVVSDLTIIGET-DRHGTEVHF 178 Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF F ++ L R+REL+FLN + IS+ DKR E ++GGI+++V Sbjct: 179 VPDPEIFRETTTFEFEKLATRVRELAFLNRGLHISIEDKRKEEAEVRAFHFEGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K L PI ++G++ +IS++++M++ DGYH N+L F NNI +GGTH SG ++ Sbjct: 239 HLNATKTVLFPEPIYLEGNQQDISVEVSMQYTDGYHTNLLSFANNIHTYEGGTHESGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y K ++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 ALTRVINDYARKQKLMRESDENLSGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P + IV+K L AS R AA+RAR++TRRKG L+I+SLPGKL Sbjct: 359 VTDRLFSEHFAKFLMENPTVGRQIVEKGLLASKARLAAKRAREVTRRKGALEISSLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS R+ K ELF+VEGDSAGGSAKQGR RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSREADKCELFIVEGDSAGGSAKQGRDREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ YV+ + ED L S + + ++ + Sbjct: 538 YIAQPPLYGVKQGKNITYVQPGKQAEDELKQIVSSLPASPKPNVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE + + + + + N Sbjct: 598 TTMDPENRMMLQVSVDDAIEADQVFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+ QLWETT++P+ R +L+V + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 NVQRYKGLGEMDDHQLWETTMDPENRMMLQVSVDDAIEADQVFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar tolworthi] Length = 632 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDETNV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 89/447 (19%), Positives = 153/447 (34%), Gaps = 47/447 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALD 802 F LMGD+VEPRR FIQEN+ LD Sbjct: 606 FEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|331092116|ref|ZP_08340947.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA] gi|330402317|gb|EGG81888.1| DNA gyrase subunit B [Lachnospiraceae bacterium 2_1_46FAA] Length = 638 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 296/585 (50%), Positives = 397/585 (67%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 STEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDTIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I ++G IY+ + G + L VTG+ TGT+VTFLP +IF Sbjct: 121 VVNALSEWLEVEIYKDGKIYKQRYERGHVMYKLEVTGTCEPEKTGTKVTFLPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL+ R RE++FL +++I L D+R E E T Y+GGI+ FVSYL++ K PL + Sbjct: 181 IFDYDTLKQRFREMAFLTRNLKIILADERPEERIEKTFHYEGGIKEFVSYLNKSKTPLYE 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D +++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Y Sbjct: 241 QIIYCEGEKDGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTKTFNDYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ V+ L Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIVSVKIGDPQFEGQTKQKLGNSEARGAVDNIVSTQLQ 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+ V+K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DP Sbjct: 361 IFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALETMSLPGKLADCSDKDPANC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 481 -HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y ++ L L G + L Sbjct: 540 KNKKVWYAYSDDELNQILTEVGRDGNNKIQRYKGLGEMDAEQLWE 584 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G ++ DI R + + ++G+ I + + R + I+E Y+ + Sbjct: 478 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 537 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 538 LEKNKKVWYAYSDDELNQILTEVGRDGNNKIQRYKGLGEMDAEQLWETTMSPEHRVLLRV 597 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+EN+ LD+ Sbjct: 598 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDV 638 >gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa] Length = 700 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 269/595 (45%), Positives = 366/595 (61%), Gaps = 16/595 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + +Y +D IQ+LKGL+ V+KRP MYIG T G GLHH++YE+LDNA+DE+ GYA Sbjct: 60 ESAGSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGYAS 118 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 I V L+ D S +++DNGRGIPTDLH E SA E ++T LHAGGKF Y+VSGGL Sbjct: 119 TINVVLHSDNSVSITDNGRGIPTDLHPETKKSALETVLTVLHAGGKFGGSNSGYRVSGGL 178 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G Y+ + G L + GT + F P Sbjct: 179 HGVGLSVVNALSEELEVTVWRDGKQYQQKYSRGNPVTTLTCHELPVESKERRGTHIKFWP 238 Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 ++F+ F+Y T+ R+REL+FLN D + + FY GG+ +V++L Sbjct: 239 DKEVFTTEIQFDYHTIAGRVRELAFLNP------KDNDPEKNQFDEHFYAGGLVEYVNWL 292 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + KKPL + D I+ID+A++W D Y + +L + N+I DGGTH+ G +++ Sbjct: 293 NTDKKPLHDVLG-FRKEVDGIAIDMALQWCSDAYSDTILGYANSIRTVDGGTHIDGAKAS 351 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + + +KS K S+ G+ REG T ++S+K+P P F QTK +L + EVR V Sbjct: 352 LTRTLNNLGKKSKVIKDKDMSLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKV 411 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE + + L+ +LE HP I+ K L+A AA+RAR+L R+K VL +SLPGKLA Sbjct: 412 VEQSIQEYLTEYLELHPDALDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLA 471 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++EI Sbjct: 472 DCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQ 531 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LI LG G+ + F + LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G +Y Sbjct: 532 NLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIY 591 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 + PPLY + RGK Y D+ L+ + + G + L Sbjct: 592 VGVPPLYKVERGKQAYYCFDDAELKKIQRSFPQNASYNIQRFKGLGEMMPAQLWE 646 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 125/340 (36%), Gaps = 38/340 (11%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 K+I D + G H+R L ++PS G P + + +Y+ + Sbjct: 364 KVIKDKDMSLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSIQEYLTEY 423 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611 L ++ LS+ + + +L + + + + + D P + Sbjct: 424 LELHPDALDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEI 483 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663 FI + +G + ++ LN + + IL Sbjct: 484 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKG 543 Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 K+ A + +L + + +F +Y+R + Sbjct: 544 EDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERG 603 Query: 713 KIKITGPCSLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 K + I R ++QR+KGLGEM +QLWETT++P+ R L ++ + Sbjct: 604 KQAYYCFDDA--ELKKIQRSFPQNASYNIQRFKGLGEMMPAQLWETTMDPERRVLKQLVV 661 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS---LPSA-LDI 803 DA++A+ +FS LMG V+ R+E IQ N+ + LDI Sbjct: 662 EDAAEANIVFSSLMGTRVDFRKELIQ-NAASMINVDHLDI 700 >gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar tohokuensis] Length = 632 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 283/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLSTRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QA LPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 89/466 (19%), Positives = 160/466 (34%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E + + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLSTRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ +++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQATLPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar shandongiensis] Length = 632 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 282/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ +V K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKVVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 +++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR K+LS+ E+ T+ITA+GT I Sbjct: 418 GIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLGKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLGKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIM 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR FIQEN+ LD Sbjct: 614 VEPRRNFIQENAKYVKNLD 632 >gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583] gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11] gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583] gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11] Length = 642 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 289/638 (45%), Positives = 414/638 (64%), Gaps = 4/638 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YDA IQ+L+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE+L G+A I V Sbjct: 6 QEYDASQIQVLEGLEAVRKRPGMYIGSTSGE-GLHHLVWEIVDNSIDEALAGFAKSIQVI 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D S TV D+GRGIP + + G A E + T LHAGGKF YKVSGGLHGVG SV Sbjct: 65 IEPDDSITVIDDGRGIPVGIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 124 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD- 186 VNALS+ L +R+ ++G +Y + G + + L V + GT V F+P +IF+ Sbjct: 125 VNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEET-DRHGTTVHFIPDPEIFTETTV 183 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 +++D L R+REL+FLN + IS+ D+R + + Y+GGI+++V +L+ +K + Sbjct: 184 YDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGGIKSYVEHLNANKDVIFPE 243 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI I+G + +I+++++M++ DGYH N+L F NNI +GGTH SG +++LTR I Y K Sbjct: 244 PIFIEGEQQDITVEVSMQYTDGYHSNILSFANNIHTYEGGTHESGFKTSLTRVINDYARK 303 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K++ + G+D REG T+V+SIK PDP+F QTK KL +SEVR+V + ++ + Sbjct: 304 QKLMKENDEKLTGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEYFTK 363 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P K IV+K + AS R AA+RAR++TRRKG L+I++LPGKLADCS +DP+K E Sbjct: 364 FLMENPTVGKQIVEKGMLASKARLAAKRAREVTRRKGALEISNLPGKLADCSSKDPEKCE 423 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G Sbjct: 424 LFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFG 483 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++YI +PPLYG+ + Sbjct: 484 ED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRFMRPIVEAGYVYIAQPPLYGVKQ 542 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 GK++ YV+ + E+ L + ++ + +D + Sbjct: 543 GKNITYVQPGKHAEEELAKVLEELPASPKPSVQRYKGLGEMDDHQLWETTMDPEKRLMAR 602 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 IE I + + + + N Sbjct: 603 VSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 640 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R + RV + DA +AD +F LMGD VEPRR FI+E Sbjct: 573 SVQRYKGLGEMDDHQLWETTMDPEKRLMARVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 632 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 633 NAHYVKNLDI 642 >gi|72160412|ref|YP_288069.1| DNA gyrase subunit B [Thermobifida fusca YX] gi|71914144|gb|AAZ54046.1| DNA gyrase subunit B [Thermobifida fusca YX] Length = 661 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 278/595 (46%), Positives = 378/595 (63%), Gaps = 12/595 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYA I VTL Sbjct: 18 AYDARSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYATAIEVTL 76 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V+DNGRGIP D H E A E+++T LHAGGKF+ KSY VSGGLHGVGVSVV Sbjct: 77 LADGGVRVTDNGRGIPVDPHPVEKKPAVELVLTTLHAGGKFDSKSYAVSGGLHGVGVSVV 136 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ L++ ++R+G ++ S+ L + ++TGT++TF P IF FN Sbjct: 137 NALSTRLEVEVRRDGYLWTQSYEMTKPVTEL-IRREPTDETGTQITFWPDGSIFETTTFN 195 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP----EPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++TL RL+E++FLN + I++ D+R P T +Y+GG+ FV +L+ K+P+ Sbjct: 196 FETLSRRLQEMAFLNKGLSITIRDERPEFVGDSPVTQTYYYEGGLSDFVRHLNATKEPVH 255 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + + D I++++AM+WN Y +V F N I +GGTH G R+ALT + Y Sbjct: 256 SSIIAFEEAGDGIAVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRAALTSIVNRYA 315 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + ++ GDD REG T+++S+K+ DP+F QTK KL ++E +S V+ ++ L Sbjct: 316 RDQKLLRDKDENLTGDDIREGLTAIVSVKLADPQFEGQTKTKLGNTEAKSFVQKVCHEYL 375 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 WL+ +P EAK IV K A+ R AAR+AR+LTRRK +L+ SLPGKLADC DP++ Sbjct: 376 RDWLDRNPGEAKDIVTKATQAARARIAARQARELTRRKTLLESTSLPGKLADCQSTDPER 435 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK GR QAILP+RGKILNVE+AR D++L + E+ +ITALGTG Sbjct: 436 CEVYIVEGDSAGGSAKGGRDPYYQAILPIRGKILNVEKARIDRILKNNEVQAIITALGTG 495 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI KLRYHKII+M DADVDG HIRTLLLT FR M LI G +Y+ +PPLY I Sbjct: 496 I-HDDFDITKLRYHKIILMADADVDGQHIRTLLLTLLFRFMKPLIEAGHVYLAQPPLYKI 554 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 V Y + + K DL +++ Sbjct: 555 KWDPRGTDVD-----YAYSDRERDEKIAAGIAAGKKDPRPRDLVQRFKGLGEMNP 604 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN S+LWETT++P+ R LL+V + DA+QAD++FS LMG++VE RR FIQ N Sbjct: 593 VQRFKGLGEMNPSELWETTMDPERRVLLQVTLDDAAQADEMFSVLMGEDVESRRAFIQRN 652 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 653 ARDVRFLDI 661 >gi|94471626|gb|ABF21079.1| DNA gyrase subunit B [Acholeplasma hippikon] Length = 599 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 280/588 (47%), Positives = 393/588 (66%), Gaps = 6/588 (1%) Query: 16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75 QIL+GL+AV+KRP MYIG T GE GLHH+++E++DN+IDE+L GYA+ + + + D Sbjct: 1 QILEGLEAVRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYANEVNIEILPDNIIK 59 Query: 76 VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWL 135 V DNGRGIP D+H + G A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W Sbjct: 60 VRDNGRGIPVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWY 119 Query: 136 KLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQH 194 ++I ++G IYE + GI L +TGTE TFL IF+ +NY+TL++ Sbjct: 120 LVQIHKDGKIYEQKYERGIPAYDLREI-GTTTETGTETTFLADPLIFTETTVYNYETLRN 178 Query: 195 RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254 R+++L+FLN ++++L DKR P + Y+GGI ++ +L++ K + Q I I + Sbjct: 179 RVQQLAFLNKGIKLTLEDKRIEHPMKEEFHYEGGIVEYIQHLNQSKSKIHQDAIYIDKEQ 238 Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314 D +++++A+++ D Y N+ FTNNI +GG H G + ALTR I+ Y + + Sbjct: 239 DGVTVEIALQYVDTYTPNIYSFTNNINTTEGGMHEDGFKLALTRVISKYADDNQLK--KD 296 Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 ++ G+D REG T+++S+K P+P+F QTK KL + EVR++ ++ L +L E+P + Sbjct: 297 DAISGEDTREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAIASQITSEALERFLLENPNQ 356 Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434 AK+IV+KV+ A+ R AAR+A++L RRK LD KLADC +DP+KSE+++VEGDS Sbjct: 357 AKLIVEKVISATRARVAARKAKELARRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDS 416 Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494 AGGSAKQGR E QAI+PLRGK+LNVE+ RFDKML+++EI LI A GTGIG D FDINK Sbjct: 417 AGGSAKQGRDSEFQAIMPLRGKVLNVEKVRFDKMLNNKEIVNLIQAFGTGIG-DEFDINK 475 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYHKI+IMTDADVDGAHIRTLLLTF FR LI +G++Y +PPLY ++ GK++QY Sbjct: 476 LRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYGKNIQYAY 535 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 +E L L + I+ + + + +D A + IK Sbjct: 536 SDEQLNTILASIEGKPSIQRYKGLGEMNYEQLWETTMDPAARTLLQIK 583 Score = 130 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 10/133 (7%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSLICNG 711 + DI R + V ++G+ I + + R F IE Y+ L + G Sbjct: 469 DEFDINKLRYHKIVIMTDADVDGAHIRTLLLTFLFRHFKPLIEHGYVYAAQPPLYKVSYG 528 Query: 712 DKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 I+ L+TI + G+ S+QRYKGLGEMN QLWETT++P R+LL++K+ D Sbjct: 529 KNIQYAYSDEQLNTILASIEGK--PSIQRYKGLGEMNYEQLWETTMDPAARTLLQIKLED 586 Query: 770 ASQADDLFSRLMG 782 A +AD +FS LMG Sbjct: 587 AIEADQVFSMLMG 599 >gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b] gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b] Length = 660 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 258/610 (42%), Positives = 379/610 (62%), Gaps = 30/610 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++Y A++I +L+GL+AV+KRP MYIG T GLHH+++E++DN++DE+L G D ITV Sbjct: 2 DNNYGAEAITVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSVDEALAGICDKITV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + VSDNGRGIP +H + G S EV++T LHAGGKF+ +YKVSGGLHGVGVS Sbjct: 61 KILEGNIIEVSDNGRGIPVGMH-KTGKSTLEVVLTVLHAGGKFDNDNYKVSGGLHGVGVS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185 VVNALS WL+ + R+G I+ ++ G+ +P+ G A + GT V F +IF Sbjct: 120 VVNALSEWLEATVTRDGKIFRQTYERGVPTSPVEEIGVADDSAHGTVVRFKADDEIFETT 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYL-------- 236 ++Y L+ RL+EL++LN ++I L D+R+ E + ++GGI+ F++ + Sbjct: 180 VYDYSVLESRLKELAYLNKGLKIELADERNAENVKAEEFLFEGGIKDFLNEIIDEEKIID 239 Query: 237 ---DRHKKPLMQSPIRIQGSR------------DNISIDLAMRWNDGYHENVLCFTNNIP 281 ++ ++ + +++AM + E V F NNI Sbjct: 240 DVIYMADTMQIEEAKEVEAEDENGNIVIKQRSAKFVEVEIAMNYTTSQRETVYSFVNNIN 299 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GGTH+SG R+ALTR I ++ K + G D REG V+S+K+P+P+F Sbjct: 300 THEGGTHVSGFRTALTRTINDIAKQMNLIKDKNGTFQGTDVREGLVCVISVKIPEPQFEG 359 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL +SEV +V + V L +LE+HP A+ +++K++ + R+AA++AR+L R Sbjct: 360 QTKTKLGNSEVTGIVSNIVGSNLKFYLEDHPKAAEKVIEKMVMSKRAREAAKKARELVLR 419 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 K L++ SLPGKLADCS +DP +SE+F+VEG+SAGGSAKQGR R QAILPLRGKILNVE Sbjct: 420 KNTLEVGSLPGKLADCSSKDPAESEIFIVEGNSAGGSAKQGRDRRFQAILPLRGKILNVE 479 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 ++ K L + EI +ITA G G G++ D+ KLRYHKI+IMTDADVDGAHIRTL+LTFF Sbjct: 480 KSGIHKALENAEIRAMITAFGAGFGEEI-DLKKLRYHKIVIMTDADVDGAHIRTLMLTFF 538 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSK 579 +R + LI+ G++YI +PPLY I GK+++Y ++ ++ + + Sbjct: 539 YRHLRELINEGYIYIAQPPLYKIQAGKAIRYAYSDDQMKQVTRVLENEGRKYTIQRYKGL 598 Query: 580 GVISKNDLRN 589 G ++ L Sbjct: 599 GEMNPEQLWE 608 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 46/79 (58%), Positives = 62/79 (78%), Gaps = 2/79 (2%) Query: 726 IFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + GRK ++QRYKGLGEMN QLWETTL+P+ R+LL+V + DAS AD +F+ LMGD+V Sbjct: 583 LENEGRK-YTIQRYKGLGEMNPEQLWETTLDPEVRTLLKVSMEDASYADKMFNILMGDKV 641 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FI++N+ LDI Sbjct: 642 EPRRKFIEDNANYVRNLDI 660 >gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301] gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301] Length = 655 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 283/616 (45%), Positives = 402/616 (65%), Gaps = 15/616 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH+IYEV+DN++DE+ Sbjct: 1 MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLIYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIVLRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT--GTEVT 174 SGGLHGVG+SVVNALS W+K+ + R+G+ + F GI L G + GT + Sbjct: 120 SGGLHGVGISVVNALSEWVKVTVYRDGSEFNQRFEKGISKGELESKKQTGKSSKKGTTIC 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229 F P IFS +F Y L RLREL++LN V+I D+R+ +E Y+GGI Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y++ K+ + I + ++N+ ++ A++W D Y +N+L F NNI DGGTH Sbjct: 240 KEYVEYMNAEKESIHPEIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + +K K ++++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S + + L+ ++E +P +I++K + + +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + FD + LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586 + GF+YI PPLY + RGK+ Y +E L+D + ++ + I+ F ++ K Sbjct: 540 VEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQL 599 Query: 587 LRNFIDDALKIDKLIK 602 ++ ++ K ++ Sbjct: 600 WDTTMNPQTRMMKRVE 615 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLIC 709 + S + R+ + ++G+ I + F +Y+R + L + Sbjct: 499 EEFDESSLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVE 556 Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G L DTI G ++QR+KGLGEM QLW+TT+NP TR + RV+I Sbjct: 557 RGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEI 616 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA +AD +F+ LMGD+V PRREFI+ + S LD Sbjct: 617 EDALEADRIFNILMGDKVAPRREFIETH--SSNLD 649 >gi|317471524|ref|ZP_07930875.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] gi|316901019|gb|EFV22982.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] Length = 637 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 253/618 (40%), Positives = 371/618 (60%), Gaps = 8/618 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + +YDA+SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G+ D I Sbjct: 1 MSSQNYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGHCDEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVTL DG+ + DNGRGIP ++++ G+SA E++ T LHAGGKF YK+SGGLHGVG Sbjct: 60 TVTLKDDGTAVIEDNGRGIPVGINEQTGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS+WLK+ +K++GNIYE F G + PL V GS ++TGT++ FLP +IF Sbjct: 120 ASVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVIGSCRKSETGTKIRFLPDPEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F +++RL E ++LN ++I I++RS E E+ GI A+V L+ K L Sbjct: 180 KTYFKAAMIRNRLHETAYLNPELKIHYINERSGEETEVLYHEPEGICAYVKKLNDGKHVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P+ + + I ++A ++ + + EN+L F NNI +GGTH++G +S T + Y Sbjct: 240 H-DPVYYKREINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSKFTAVMNQY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ + G D R G T+++S+K P+PRF QTK KL + + VV D Sbjct: 299 ARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKVVGEITGDE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +++ K ++ ++ +R A +A+ + L I S GKL++C R P+ Sbjct: 359 TVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDS-NGKLSNCESRKPE 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I G Sbjct: 418 ECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKTMINTFGC 477 Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + + FDI KLRY KI+IMTDADVDGAHI TLLLTFF+R MP LI +G +Y+ PP Sbjct: 478 GFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPP 537 Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY I + Y+ D+ +LE Y ++ + + + +D + K Sbjct: 538 LYKAIPKKGKETYLFDDTALEKYKAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLK 597 Query: 600 LIKDFYPNHDKTFIEQAV 617 I+ + Sbjct: 598 QIEIEDARMASDVTSMLM 615 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 15/269 (5%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + E++ + L+ Q LS + + + FI + K Sbjct: 376 CAEKSAKIRKAE-EKAKTNLLVRQKLSIDSNGKLSNCESRKPEECEIFIVEGDSAGGSAK 434 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E V +++ +N + + + + Sbjct: 435 TARNRRTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINTFGCGFSEGYGNDFDIEKL 492 Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715 ++I + ++G+ I + F ++ T G + Sbjct: 493 RYQKIV--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPPLYKAIPKKGKETY 550 Query: 716 ITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + +L KG ++QRYKGLGEM+ASQLWETTL+P+TR+L +++I DA A Sbjct: 551 LFDDTALEKY--KAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLKQIEIEDARMAS 608 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 D+ S LMG EV PRR+FI +N+ + LDI Sbjct: 609 DVTSMLMGSEVPPRRQFIYDNAEDAMLDI 637 >gi|238917147|ref|YP_002930664.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] gi|238872507|gb|ACR72217.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] Length = 638 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 248/590 (42%), Positives = 361/590 (61%), Gaps = 8/590 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YDA+SI IL+GL+AV+ RP MYIG G GL+H+IYE+ DN++DE L G+ I Sbjct: 1 MAANKYDANSISILEGLEAVRMRPGMYIGSV-GTKGLNHLIYEIADNSVDEHLAGFCTQI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTLN DG+ T+ DNGRGIP +H + GI A EV+ T LHAGGKF YK+SGGLHGVG Sbjct: 60 NVTLNDDGTATIKDNGRGIPIGIHPKAGIPAVEVVFTVLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I+ +G +Y+ + G PL G+ NDTGT VTFLP +IF Sbjct: 120 ASVVNALSVWLEVEIRVDGGVYKQRYERGKATAPLEKIGTCRKNDTGTTVTFLPDGEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F D+++ RL E ++LN + I DKR + T G++A++ L+ K+ + Sbjct: 180 KTRFKADSIKSRLHETAYLNPGLTIEFEDKRKGSEDKETFHEPDGLKAYIKDLNNGKETV 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + +++I +++A ++ + + EN+L F NNI ++GGTH++G ++ T I Y Sbjct: 240 C-DIVYFKKKQEDIEVEVAFQFVNEFEENILGFCNNIYTQEGGTHITGFKTKFTMIINQY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K + G D R G T+V+++K P PRF QTK KL + + +VV + D Sbjct: 299 ARELGILKDKDANFTGLDVRNGMTAVVAVKHPAPRFEGQTKTKLDNPDAGTVVANVTGDE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + + + H + ++ ++ +R A +A+ K I S GKLA+C ++P+ Sbjct: 359 VQLYFDRHLDDLNAVIACAEKSAKIRKAEEKAKTNMLTKQKFSIDS-NGKLANCESKNPE 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I + Sbjct: 418 ECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKTMINSFNC 477 Query: 484 GI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + FDI++LRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI+ G +YI PP Sbjct: 478 GFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGHVYIATPP 537 Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + + +Y+ D+++LEDY + G + + L Sbjct: 538 LYKVVPKKGEGEYLYDDKALEDYRKKHTSGTFTLQRYKGLGEMDPDQLWE 587 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 37/68 (54%), Positives = 51/68 (75%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+ QLWETTLNP+TR L +V+I DA A ++ + LMG +V PRREFI Sbjct: 570 TLQRYKGLGEMDPDQLWETTLNPETRILKQVEIEDARLATEVTAMLMGTDVPPRREFIYT 629 Query: 795 NSLPSALD 802 ++ + +D Sbjct: 630 HANEAEID 637 >gi|123969376|ref|YP_001010234.1| DNA gyrase subunit B [Prochlorococcus marinus str. AS9601] gi|123199486|gb|ABM71127.1| DNA gyrase, subunit B [Prochlorococcus marinus str. AS9601] Length = 655 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 280/616 (45%), Positives = 398/616 (64%), Gaps = 15/616 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEDKRSNKISNDYGADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIVLRADGSAFISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVT 174 SGGLHGVG+SVVNALS W+ + + R+G+ + F G+ L GT + Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSKGELQAKKQTGKPFKKGTSIC 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229 F P IFS +F Y L RLREL++LN V+I D+R+ +E Y+GGI Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y++ K + I + ++N+ ++ A++W D Y +N+L F NNI DGGTH Sbjct: 240 KEYVEYMNAEKDSIHPEIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + +K K ++++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S + + L+ ++E +P +I++K + + +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLIGEALTKYMEFNPAILDLILEKAIQSFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + FD + LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDESSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKND 586 + GF+YI PPLY + RGK+ Y +E L+D + ++ + I+ F ++ K Sbjct: 540 VEKGFIYIACPPLYKVERGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQL 599 Query: 587 LRNFIDDALKIDKLIK 602 ++ ++ K ++ Sbjct: 600 WDTTMNPQTRMMKRVE 615 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 12/159 (7%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNR-IEENYLTILSLIC 709 + S + R+ + ++G+ I + F +Y+R + L + Sbjct: 499 EEFDESSLRYHRVV--IMTDADVDGAHIRTLLLTFFYRYQRELVEKGFIYIACPPLYKVE 556 Query: 710 NGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G L DTI G ++QR+KGLGEM QLW+TT+NP TR + RV+I Sbjct: 557 RGKNHNYCYNENQLKDTIQGFGENANYNIQRFKGLGEMMPKQLWDTTMNPQTRMMKRVEI 616 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803 DA +AD +F+ LMGD+V PRREFI+ +S L + LDI Sbjct: 617 EDALEADRIFNILMGDKVAPRREFIETHSGNLDMATLDI 655 >gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus weihenstephanensis] Length = 632 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 283/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + GI L V G + TGT F P ++IF+ Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDAEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 33/367 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ +I+ + +++ Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446 Query: 632 VSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVKRIAR-------GVQEQFVLE 678 + + RL+ I E + + DI R + V + Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRT 506 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F + + I I L + G KI+ L+ I + + + Sbjct: 507 LLLTFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGI 565 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 566 QRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENA 625 Query: 797 LPS-ALD 802 LD Sbjct: 626 KYVKNLD 632 >gi|167770843|ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM 17241] gi|167666883|gb|EDS11013.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM 17241] Length = 662 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 281/636 (44%), Positives = 382/636 (60%), Gaps = 15/636 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L G+ I V Sbjct: 26 EQEYDGSQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNSIDEALAGHCTKIEV 84 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L VSDNGRGIP + + GI A V+ T LHAGGKF YKVSGGLHGVG S Sbjct: 85 DLLPGNIVKVSDNGRGIPVGIQPKLGIPAVTVVFTVLHAGGKFGGSGYKVSGGLHGVGAS 144 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ + Y F G+ PL TG + GT V F + IF Sbjct: 145 VVNALSEWLEVEVCDGSARYYQRFERGVAVEPLKNTGPTE-EKGTSVAFKADAAIFEETT 203 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD--RHKKPL 243 ++YDTL RLRE +FLN+ V I L D+R EP E + Y+GGI +FV ++ + +P+ Sbjct: 204 EYDYDTLLRRLREQAFLNAGVYIVLRDQRGTEPVEEHLHYEGGIRSFVEHIHKSKGVEPI 263 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I + + + ++AM++ND Y + +L F NNI DGGTH SG ++ALTR + Y Sbjct: 264 HDEIIYLAARDGDNTAEVAMQYNDSYTDLILSFANNIHTTDGGTHESGFKTALTRTMNDY 323 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K KD G+D EG T+++S+K+ D +F QTK +L ++++R++V S V + Sbjct: 324 AHKYK-LLKDDEKFSGEDVLEGLTAIVSVKLTDAQFEGQTKARLGNTQMRAMVSSLVYEK 382 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + EE+P AK I++K ++AS R+AARRARD+ RRK L+ ASLPGKLADCS+R Sbjct: 383 LTTYYEENPAVAKAIIEKSINASRAREAARRARDVARRKSALETASLPGKLADCSQRGRD 442 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +E+++VEGDSAGGSAK GR R QAILPL GK+LNVE+AR DK+ + ++ +ITALGT Sbjct: 443 GTEIYIVEGDSAGGSAKMGRDRRFQAILPLWGKMLNVEKARLDKVYGNDKLMPVITALGT 502 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FDI KLRY K+IIM DADVDG+HIRTLLLTFFFR M LI +G + I +PPL+ Sbjct: 503 GIG-DEFDIEKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEHGHVCIAQPPLFK 561 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 ++RGK ++Y +E + Y+ + G + L +D Sbjct: 562 VSRGKQVRYAFSDEERDQYIRELCPDGSGKADVQRYKGLGEMDPEQLWET-----TMDPR 616 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I V + + Sbjct: 617 NRTMLRVEMADAIRADEIFTVLMGDKVAPRKDFIEQ 652 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT++P R++LRV++ DA +AD++F+ LMGD+V PR++FI++N Sbjct: 594 VQRYKGLGEMDPEQLWETTMDPRNRTMLRVEMADAIRADEIFTVLMGDKVAPRKDFIEQN 653 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 654 AKYVQNLDI 662 >gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni] Length = 627 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHRDGKIQYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 153/463 (33%), Gaps = 50/463 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRI 697 + + DI R + V + F + + I I Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYI 525 Query: 698 EENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTL 755 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT+ Sbjct: 526 Y-IAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTM 584 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 +P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 585 DPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|13507742|ref|NP_109691.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] gi|121890|sp|P22447|GYRB_MYCPN RecName: Full=DNA gyrase subunit B gi|44484|emb|CAA37622.1| gyrase B subunit [Mycoplasma pneumoniae] gi|1673811|gb|AAB95799.1| DNA gyrase subunit B [Mycoplasma pneumoniae M129] Length = 650 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 265/601 (44%), Positives = 380/601 (63%), Gaps = 15/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M DN + +YD+ SI+IL+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+ Sbjct: 1 MEDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGST-GEEGLHHMIWEIIDNSIDEAMGGF 59 Query: 61 ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A + +TL D T V D+GRGIP D+H + S E + T LHAGGKF+ SYKVSGG Sbjct: 60 ASTVKLTL-KDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS K+ + RE Y ++F N G + LV G + GT+V F+P Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKEHGTKVEFVPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + D+ + RL++L+FLN +QI +D+R P+ + Y GG+ ++ +L+ Sbjct: 179 FTVMEKSDYKQTVIASRLQQLAFLNKGIQIDFVDERRQNPQSFSWKYDGGLVQYIHHLNN 238 Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 K+PL + I + I +++A ++N Y++++ F NNI +GGTH Sbjct: 239 EKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + G R+AL + I + ++ K+ + DD EG T+++SIK P+P++ QTK+KL Sbjct: 299 VEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V S V++ ++ E+P EA I++K L A R ++ AR+LTRRK D Sbjct: 359 NTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADC+ RDP SEL++VEGDSAGG+AK GR R QAILPLRGKILNVE++ F+++ Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQI 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ++ EI L+ A+G GI + F++ KLRY+KIIIMTDADVDGAHIRTLLLTFFFR M L Sbjct: 479 FNNVEISALVMAVGCGI-KPDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPL 537 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 + G +YI +PPLY ++ Y++ + LE++ + G + L Sbjct: 538 VEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHPNLKYNLQRYKGLGEMDAIQLW 597 Query: 589 N 589 Sbjct: 598 E 598 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QRYKGLGEM+A QLWETT++P R+LL+V + DAS AD FS LMGDEV PRREFI+ Sbjct: 580 YNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIE 639 Query: 794 ENSLPS-ALDI 803 +N+ +DI Sbjct: 640 QNARNVKNIDI 650 >gi|260588813|ref|ZP_05854726.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] gi|260540592|gb|EEX21161.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] Length = 641 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 300/590 (50%), Positives = 399/590 (67%), Gaps = 4/590 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS I+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY Sbjct: 1 MSTEIKT-EYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V++N D S TV DNGRGIP ++++ GI A EV+ T LHAGGKF YKVSGGL Sbjct: 59 CDTIDVSINEDNSITVIDNGRGIPVGINQKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS+WL++ I EG IY + G L + G TGT VTFLP Sbjct: 119 HGVGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F++ TL+HR RE++FL ++I DKR E +E+T Y+GGI+ FV YL++ Sbjct: 179 EIFEETIFDFGTLKHRFREIAFLTKGLRIIARDKREEEEKEVTFHYEGGIKEFVQYLNKS 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L + + +G++D + +++AM+ ND Y EN F NNI +GGTH+ G R+ALT+ Sbjct: 239 NTALYEEILYFEGNKDGVMVEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGFRNALTKT 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K+ K+ ++++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+ Sbjct: 299 FNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDGI 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P AKII++K L + RDAAR+AR+LTRRK LD SLPGKLADC + Sbjct: 359 VSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPGKLADCVD 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+ ++ EI +IT Sbjct: 419 KDPSKCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYANAEIKAMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ KP Sbjct: 479 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PL+ I + K + Y E+ D L + G + + L Sbjct: 538 PLFKIEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWE 587 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R I++ Y+ + Sbjct: 482 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKPPLFK 541 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + N D + IG G ++QRYKGLGEM+A QLWETT++P++R L+RV Sbjct: 542 IEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWETTMDPESRILMRVV 601 Query: 767 ITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + S+ D F+ LMGD+VEPRREFI+EN+ + LDI Sbjct: 602 MDEDSTSELDLTFTTLMGDKVEPRREFIEENAKYAKNLDI 641 >gi|89114226|gb|ABD61708.1| DNA gyrase subunit B [Acholeplasma oculi] gi|89114230|gb|ABD61710.1| DNA gyrase subunit B [Acholeplasma oculi] Length = 594 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 286/587 (48%), Positives = 391/587 (66%), Gaps = 6/587 (1%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 IL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYA IT+ + V Sbjct: 1 ILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 +DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W Sbjct: 60 TDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195 + I ++G IYE + GI L GS +TGT TFL IF+ +N +TL++R Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLRELGSTE-ETGTRTTFLADPLIFTETTVYNLETLKNR 178 Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255 +++L+FLN ++++LID R P + T Y+GGI +V +L++ K + Q I + +D Sbjct: 179 IQQLAFLNKGLKLTLIDSRLETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYTEKEQD 238 Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315 +++++AM++ D Y N+ FTNNI +GG H G + ALTR I+ Y + Sbjct: 239 GVTVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDD 296 Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375 ++G+D REG T+++S+K P+P+F QTK KL + EVR++ + + L +L E+P +A Sbjct: 297 VILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLLENPQQA 356 Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 K+IV KVL A+ R AAR+A++LTRRK LD KLADC +DP KSE+++VEGDSA Sbjct: 357 KLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYIVEGDSA 416 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTGI D FDI KL Sbjct: 417 GGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKL 475 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555 RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY +T GK+L+YV Sbjct: 476 RYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYS 535 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 E+ L + L + I+ + + ++ +D A + IK Sbjct: 536 EDELNETLKSIETKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIK 582 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + + ++ N + + + + +V V + Sbjct: 438 VLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKLRYHKIVIMTDADVDGAHIRTLL 497 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739 F F I + + + + + + L +T+ S + G +QRY Sbjct: 498 LTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYSEDELNETLKSIETKPG--IQRY 555 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 KGLGEMNA QLW+TT++P TR+LL++K+ DA +AD +FS Sbjct: 556 KGLGEMNAEQLWDTTMDPATRTLLQIKLEDAIEADQVFS 594 >gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822] gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822] Length = 640 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 297/586 (50%), Positives = 399/586 (68%), Gaps = 4/586 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPTD H G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 DINPDGSVTVTDDGRGIPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+ + + R+ + + GI L + TGT V+FLP + IFS Sbjct: 121 VVNALSEWVNVTVWRDQKRFTQRYERGIPVTSLESQPETDHSTGTSVSFLPDTQIFSDGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL++LN+ V+I+ DKR +PR + Y+GGI+ +V+Y+ R K+PL + Sbjct: 181 EFDYSTLAGRLRELAYLNAGVRITFSDKRLEQPRVESYCYEGGIKEYVAYMCREKQPLHE 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +QG R+ I I++A++W D Y++N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 EIIYVQGERNGIQIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTRTLNNVA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKIKENEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE HP A I++K + A +AARRAR+L RRK VL+ + LPGKLADCSERDP K Sbjct: 361 GEYLEFHPQIADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSERDPAK 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+F+VEGDSAGGSAKQGR R +QAILPLRGKILN+E+ K+ + EI +LITALG G Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I + FD +LRYH+IIIMTDAD DG+HIRTLLLTFF+R S++ G++YI PPLY + Sbjct: 481 IKGEEFDAAQLRYHRIIIMTDADYDGSHIRTLLLTFFYRYQRSIVDQGYIYIACPPLYKV 540 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 RGK+ +Y +E L+ Y+ + G + L Sbjct: 541 ERGKNHRYCYNERELQQYISELPPNANYSIQRFKGLGEMMPQQLWE 586 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 10/131 (7%) Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGIS 735 + +F +Y+R ++ I + + + L I S Sbjct: 512 LLLTFFYRYQRSIVDQGYIYIACPPLYKVERGKNHRYCYNERELQQYISELPPNA--NYS 569 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEM QLWETT+NP+TR L +V+I DA++A++LF+ LMGD V PRREFI+ + Sbjct: 570 IQRFKGLGEMMPQQLWETTMNPETRLLKQVEIEDAAKAEELFTILMGDRVLPRREFIETH 629 Query: 796 S--LP-SALDI 803 L + LDI Sbjct: 630 GPRLKLTDLDI 640 >gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis] Length = 588 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 274/559 (49%), Positives = 387/559 (69%), Gaps = 5/559 (0%) Query: 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92 G T GLHH+++E++DN+IDE+L GY I + + D S TV DNGRGIP +H++ G Sbjct: 1 GSTSS-KGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEKMG 59 Query: 93 ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 A EVIMT LHAGGKF+ YKVSGGLHGVG SVVNALS+ L + + R+G I+ ++ Sbjct: 60 RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQTYKR 119 Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLI 211 G+ L + G + TGT F+P +IF +++YD L +R+REL+FL V I++ Sbjct: 120 GVPVTDLEIIGETDH-TGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTKGVNITIE 178 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 DKR + R+ Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y Sbjct: 179 DKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVALQYNDSYTS 238 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 N+ FTNNI +GGTH +G ++ LTR I Y K K++ ++ GDD REG T+++S Sbjct: 239 NIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDDVREGLTAIIS 298 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 IK PDP+F QTK KL +SE R++ ++ + + ++ E+P AK IV K L A+ R A Sbjct: 299 IKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDKGLMAARARMA 358 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 A++AR+LTRRK L+I++LPGKLADCS +DP SEL++VEGDSAGGSAKQGR R QAIL Sbjct: 359 AKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAIL 418 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDGA Sbjct: 419 PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDGA 477 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 HIRTLLLTFF+R M +I NG++YI +PPLY + +GK ++Y +++ LE+ L + + Sbjct: 478 HIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPK 537 Query: 572 I-ELFCDSKGVISKNDLRN 589 G ++ L Sbjct: 538 PGLQRYKGLGEMNATQLWE 556 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 412 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 469 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSL 722 V + F + + I + + L + G +++ L Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMRQIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKELEEL 528 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L T+ + G+ QRYKGLGEMNA+QLWETT++P +R+LL+V + DA AD+ F LMG Sbjct: 529 LKTLPQTPKPGL--QRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMG 586 Query: 783 DE 784 D+ Sbjct: 587 DK 588 >gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787] gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787] Length = 638 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 295/585 (50%), Positives = 396/585 (67%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 SAEYGADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNAVDEALAGYCDTIFV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 SINEDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG +Y+ + G + L V TGT+VTFLP +IF Sbjct: 121 VVNALSEWLEVEIYNEGKVYKQRYERGKVVYKLKVIDECDAQKTGTKVTFLPDKEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL+ R RE++FL +++I L D+R EP E T Y+GGI+ FV YL++ K PL + Sbjct: 181 VFDYDTLKQRFREMAFLTKNLKIVLKDERPEEPIEKTFHYEGGIKEFVQYLNKSKTPLYE 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D +++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Y Sbjct: 241 QIIYCEGEKDGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ V+ L Sbjct: 301 KNKLLKDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVSTQLE 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+ V+K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DP Sbjct: 361 IFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPANC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLAQPPLYKLE 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y +E L L+ G + L Sbjct: 540 KNKKVWYAYSDEELNKILLEVGRDGNNKIQRYKGLGEMDAEQLWE 584 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R I+E Y+ + Sbjct: 478 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKEGYVYLAQPPLYK 537 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 538 LEKNKKVWYAYSDEELNKILLEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 597 Query: 766 KITDA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + S+ D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 598 TMDEESTSELDLTFTTLMGDKVEPRREFIEENAKYVNNLDI 638 >gi|153815427|ref|ZP_01968095.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756] gi|317500889|ref|ZP_07959101.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|331089209|ref|ZP_08338111.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA] gi|145847286|gb|EDK24204.1| hypothetical protein RUMTOR_01662 [Ruminococcus torques ATCC 27756] gi|316897769|gb|EFV19828.1| DNA gyrase subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|330405761|gb|EGG85290.1| DNA gyrase subunit B [Lachnospiraceae bacterium 3_1_46FAA] Length = 645 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 298/590 (50%), Positives = 393/590 (66%), Gaps = 4/590 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY Sbjct: 4 SSTEFDAEYGADQIQILEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNSVDEALAGYC 62 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V +N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLH Sbjct: 63 DEIQVNINKDNSVTVCDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLH 122 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSD 180 GVG SVVNALS WL++ I +G IY+ + G + L V G + TGT VTF P ++ Sbjct: 123 GVGASVVNALSEWLEVEIYHDGQIYKQRYERGKVVYKLKVVGECEPDRTGTTVTFFPDAE 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+YDTL+ R RE++FL ++I L D R E RE T Y+GGI+ FV+YL++ K Sbjct: 183 IFDDTVFDYDTLKQRFREMAFLTKGLKIVLRDWRGEELREHTFHYEGGIKEFVTYLNKSK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL + I +G +D +++++AM+ ND Y EN F NNI +GGTH+ G R ALT+ Sbjct: 243 TPLYEQIIYCEGMKDGVAVEIAMQHNDSYSENTYGFVNNITTPEGGTHIEGFRGALTKTF 302 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K + ++ GDD REG T+++S+K+ DP+F QTK+KL +SE R V S + Sbjct: 303 NDYARKNKLLKDSEPNLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVNSIL 362 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +LE++P AKI V+K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++ Sbjct: 363 STQLEIFLEQNPSVAKITVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDK 422 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA Sbjct: 423 DPVNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITA 482 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PP Sbjct: 483 FGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPP 541 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 LY + + K + Y +E L L G + + L Sbjct: 542 LYKLEKNKKVWYAYSDEELNQILTEVGRDSNNKIQRYKGLGEMDADQLWE 591 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R + I+E Y+ + Sbjct: 485 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 544 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 545 LEKNKKVWYAYSDEELNQILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRILLRV 604 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 605 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVKNLDI 645 >gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf] gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657] gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf] gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657] Length = 637 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 293/588 (49%), Positives = 398/588 (67%), Gaps = 7/588 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 3 QENKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGFCTH 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 IEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS + ++R+G+I+ + GI L + G GT++ F P +IF Sbjct: 122 GASVVNALSEHCNVEVRRDGHIWLQKYERGIPKTGLDIVGDTE-KHGTKIYFKPDVEIFD 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F YDTL RLREL+FLN ++ISL D+R + + Y+GG+ +FV YL+R+K+ L Sbjct: 181 ELEFEYDTLAQRLRELAFLNKGIKISLTDERYDK--QEMFHYEGGLRSFVLYLNRNKEKL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Y Sbjct: 239 HQQPIYVDKNKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRAINDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K K +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVR +V++ V + Sbjct: 299 ARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDTIVGES 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + ++LEE+P KII++K L AS R+AA+RAR+LTRRK VL+ SLPGKLADCS +DP Sbjct: 359 IGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSVLESTSLPGKLADCSSKDPS 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA G Sbjct: 419 LCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITAFGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG++ F++ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 479 GIGKE-FNLEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVEEGHVYIAQPPLYR 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 I + K YV ++ L++ L+ + G + L Sbjct: 538 IYKAKKELYVYSDKELDEALLELGGKDTNTNIQRYKGLGEMDPEQLWE 585 Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K ++ + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFNLEKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + + + + + ++ + L + + +G K ++QR Sbjct: 512 LTFFYRYMKELVEEGHVYIAQPPLYRIYKAKKELYVYSDKELDEALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEM+ QLWETT+NP+ R+LL+V I DA AD++F+ LMG +VEPRR+FI+ N+ Sbjct: 572 YKGLGEMDPEQLWETTMNPEHRTLLQVTIEDAMAADEIFTILMGTKVEPRRDFIENNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205] gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205] Length = 656 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 269/592 (45%), Positives = 369/592 (62%), Gaps = 19/592 (3%) Query: 15 IQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSC 74 IQ+L+GL+AV+KRP+MYIGD E GLHH++ E +DN+IDE++ GY I VT+N D S Sbjct: 16 IQVLEGLEAVRKRPAMYIGDIS-EKGLHHLVNETVDNSIDEAMAGYCTDIEVTINEDNSI 74 Query: 75 TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSW 134 TV DNGRGIP D+H++ SA EV+MT LHAGGKF++ SYKVSGGLHGVGVS VNALS+ Sbjct: 75 TVEDNGRGIPVDMHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSTH 134 Query: 135 LKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQH 194 + ++ R G IY+ + G P+ V G N GT F P IF+ + +D + + Sbjct: 135 MLSQVFRGGKIYQQEYEKGKPLYPVKVVGET-NKRGTRQQFWPDPTIFTHTVYKWDIIAN 193 Query: 195 RLRELSFLNSSVQI---SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251 R+REL+FLN+ ++I L + +E K G++ FV Y+DRH+ L I ++ Sbjct: 194 RMRELAFLNAGIKITLRDLRPDEEGKTKEQVFHAKDGLKEFVRYVDRHRTHLFDDVIYLK 253 Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK----S 307 + I I++A+ +N Y EN+ + NNI +GGTHL+G R ALTR + +Y E S Sbjct: 254 TEKQGIPIEIAVMYNTDYSENIHSYVNNINTIEGGTHLTGFRMALTRTLKAYAEADPTIS 313 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +K K + +D REG T+V+SIK+ +P+F QTK KL +SEV+ V+ VN+ LS + Sbjct: 314 KQIEKAKVEIAPEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVQGAVQQAVNEALSDY 373 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEEHP EAK I +KV+ A+ R AAR+AR+ +RK + LPGKLADCS +DPK+ E+ Sbjct: 374 LEEHPDEAKRICEKVVLAATARIAARKARESVQRKNFMTGGGLPGKLADCSMKDPKECEI 433 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486 FLVEGDSAGGSAKQGR R QAILPLRGKILNVE+ ++ K+ ++ + +I ++G G Sbjct: 434 FLVEGDSAGGSAKQGRDRFRQAILPLRGKILNVEKVQWHKVFEAESVMNIIQSIGVRFGV 493 Query: 487 ----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 + +KLRY KIIIMTDADVDG+HI TL++T F+R MP +I G LYI PPLY Sbjct: 494 DGEDSKEANTDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVIEEGHLYIATPPLY 553 Query: 543 GITRGKSLQYVK-----DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 T + + ++ Y G ++ L Sbjct: 554 KCTYRSKVSEYCYTEQQRQAFIDKYGDGVEDKNIHTQRYKGLGEMNPEQLWE 605 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 44/71 (61%), Positives = 57/71 (80%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K I QRYKGLGEMN QLWETT++P TR L +V I +A+QAD++FS LMGD+VEPRREF Sbjct: 585 KNIHTQRYKGLGEMNPEQLWETTMDPSTRLLKQVTIENAAQADEIFSMLMGDDVEPRREF 644 Query: 792 IQENSLPSALD 802 I++N+ + +D Sbjct: 645 IEQNATYANID 655 >gi|269124283|ref|YP_003297653.1| DNA gyrase subunit B [Thermomonospora curvata DSM 43183] gi|268309241|gb|ACY95615.1| DNA gyrase, B subunit [Thermomonospora curvata DSM 43183] Length = 649 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 278/567 (49%), Positives = 375/567 (66%), Gaps = 16/567 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE+L GYAD I VTL Sbjct: 2 AYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEALAGYADTIEVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V+DNGRGIP D H E A EV++T LHAGGKF+ KSY VSGGLHGVG SVV Sbjct: 61 LADGGVRVADNGRGIPVDEHPVEKRPAIEVVLTTLHAGGKFDGKSYAVSGGLHGVGSSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS+ L ++++G ++ S+ G PL G ++TGT +TF P +IF ++ Sbjct: 121 NALSTRLDAEVRQKGYVWRQSYTWRG-PIAPLAK-GEPTDETGTTITFWPDPEIFETVEW 178 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDRH 239 N++TL RL+E++FLN + I+L D+R EPR + Y+GGI FV YL+ Sbjct: 179 NFETLSRRLQEMAFLNRGLSITLTDERPGHLGGEDGTEPRRVVYCYEGGISDFVRYLNAK 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + I + + +S+++AM+W+ Y E+V F N I +GGTH G RSALT Sbjct: 239 KDAVHPDVISFEEHTEGMSVEVAMQWSGSYTESVHTFANTINTAEGGTHEEGFRSALTSV 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y ++ ++ G+D REG T+++SIK+ +P+F QTK KL ++E RS V+ Sbjct: 299 VNRYARDKGLLREKDDNLTGEDVREGLTAIISIKLTNPQFEGQTKTKLGNTEARSFVQKT 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L W + P +AK I+ K A+ R AAR+ARDLTRRK +L+ SLPGKLADC Sbjct: 359 VHEHLKDWFDREPGQAKEIINKASQAARARIAARQARDLTRRKSLLESTSLPGKLADCQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP K EL++VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR DK+L + E+ +IT Sbjct: 419 TDPAKCELYIVEGDSAGGSAKGGRNPHFQAILPIRGKILNVEKARIDKILKNAEVQAIIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTG+ D FDI+KLRYHKII+M+DAD+DG HI TLLLT FR M LI G +Y+ +P Sbjct: 479 ALGTGV-HDEFDISKLRYHKIILMSDADIDGHHINTLLLTLLFRFMRPLIEAGHVYLSQP 537 Query: 540 PLYGITRGKSLQ---YVKDEESLEDYL 563 PLY I + Q Y + + + Sbjct: 538 PLYKIKWDQRGQDAEYAYSDAERDAII 564 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA +LW+TT++P R LL+V + DA+QAD+LFS LMG++VEPRREFIQ N Sbjct: 581 VQRFKGLGEMNAQELWDTTMDPSRRVLLQVTLDDAAQADELFSVLMGEDVEPRREFIQRN 640 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 641 AKDVRFLDI 649 >gi|292655722|ref|YP_003535619.1| DNA gyrase subunit B [Haloferax volcanii DS2] gi|302425107|sp|D4GZ01|GYRB_HALVD RecName: Full=DNA gyrase subunit B gi|291372625|gb|ADE04852.1| DNA gyrase subunit B [Haloferax volcanii DS2] Length = 639 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 289/594 (48%), Positives = 387/594 (65%), Gaps = 12/594 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q++ Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MS---QDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V L+ DGS +V+DNGRGIP D H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDAIEVALHEDGSVSVTDNGRGIPVDTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGS--AGNDTGTEVTFLP 177 HGVGVSVVNALSS L++ +KR+G ++ F G G DTGT + F P Sbjct: 117 HGVGVSVVNALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWP 176 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IF +F++ TL++RLREL+FLNS V+ISL D+R+ E T ++GGI FV YL+ Sbjct: 177 DDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESS--TFLFEGGIREFVEYLN 234 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K L I + I +++AM+ D ++ F NNI ++GGTHL+G ++ALT Sbjct: 235 ETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALT 294 Query: 298 RQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 R + Y ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR +V Sbjct: 295 RVVNDYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIV 354 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + L + EE+P A I+ K ++A+ R AA++A +LTRRK L+ SLPGKLAD Sbjct: 355 ESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLAD 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C RDP +SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ R D++L + EI Sbjct: 415 CQSRDPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRA 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+G G+G D FDI K RY ++I+MTDADVDGAHIRTLLLT +R M LI G++Y Sbjct: 475 LITAIGGGVG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 533 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589 +PPLY + + DE + + + + G ++ + L + Sbjct: 534 AQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWD 587 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT+NP+ R L R+ + DA+ AD +F+ LMGD V PR++FI++ Sbjct: 570 QVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKD 629 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 630 HANDAEWVDI 639 >gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae] Length = 627 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNA S+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNAPSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|163848553|ref|YP_001636597.1| DNA gyrase subunit B [Chloroflexus aurantiacus J-10-fl] gi|222526487|ref|YP_002570958.1| DNA gyrase subunit B [Chloroflexus sp. Y-400-fl] gi|163669842|gb|ABY36208.1| DNA gyrase, B subunit [Chloroflexus aurantiacus J-10-fl] gi|222450366|gb|ACM54632.1| DNA gyrase, B subunit [Chloroflexus sp. Y-400-fl] Length = 636 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 278/591 (47%), Positives = 395/591 (66%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +YD IQ+L+G++AV+KRP MYIG TD +GLH M+ EV+DN++DE + G Sbjct: 1 MTSETPT-TYDESQIQVLEGMEAVRKRPGMYIGPTD-INGLHTMVREVVDNSVDEVMAGR 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ++VT++ DGS TVSD+G GIP +H +EGIS ++MTRLHAGGKF YKVS GL Sbjct: 59 ATSVSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALS+++++ + R G Y + G+ ++ + GT FLP + Sbjct: 119 HGVGVSAVNALSAYMRVDVYRNGRHYYQEYRAGVPVTDVIDL-EPTDRHGTTTRFLPDTS 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I D+N+DTL R RE+S+LN ++ +D+R+ RE+ +++GGI ++V +L++ K Sbjct: 178 IIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDERT--NRELNFYFEGGIVSYVRHLNKEK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L + P ++ D++ +++A+++ D + +NV F NNI DGG+HLSG R+ALTR Sbjct: 236 TVLHRQPFYVERIVDDVMVEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRTALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y K ++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E S V + Sbjct: 296 INNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATV 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +D SAWL+E+P EA+ I++K + A+ R A ++ R+ T RK ++ SLPGKLADCS+ Sbjct: 356 FSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRE-TARKSAMEGFSLPGKLADCSD 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +P + EL++VEGDSAGG+AKQGR R QAILPLRGKILNVE++R D+MLS+ E+ LIT Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GT IG D FD++KLRYH+I +MTDADVDG+HIRTLLLTFFFR M LI NG L+I +P Sbjct: 475 AIGTSIG-DQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY I G+ Y + + YL ++ G ++ L Sbjct: 534 PLYRIKHGREQVYTYSDAERDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWE 584 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +QRYKGLGEMNA QLWETT+NP R +L+V + DA++AD+ F+ LMGD V PRR FIQ Sbjct: 566 VEIQRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTMLMGDLVPPRRRFIQ 625 Query: 794 ENSLP-SALDI 803 ++ LDI Sbjct: 626 THANEVVELDI 636 >gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30] gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10] gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30] gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10] Length = 649 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ ++ +YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ +EG +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ FN+D L R+REL+FLN ++IS+ DKR +P Y GGI+++V Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + PI ++G + I+++++M++ D YH N+L F NNI +GGTH G ++ Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y KS K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P + +V+K L AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ Y++ ++ E L N S + ++ + Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+ QLWETT++P+ R +LRV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 TVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|295108649|emb|CBL22602.1| DNA gyrase subunit B [Ruminococcus obeum A2-162] Length = 641 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 297/586 (50%), Positives = 389/586 (66%), Gaps = 4/586 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +N+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ I Sbjct: 4 ENTEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGFCTEIQ 62 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N D S TV DNGRGIP ++ + GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 63 VTINPDNSITVVDNGRGIPVGVNHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGA 122 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSV 184 SVVNALS WL++ I EG Y+ + G PL V G TGT VTFLP +IF Sbjct: 123 SVVNALSEWLEVSIYHEGKEYKQRYERGHTMYPLKVVGDCEEGKTGTTVTFLPDKEIFEE 182 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++YD L+ RLRE++FL ++I L D+R +E T Y+GGI FV+YL+R K+ L Sbjct: 183 TVYDYDILKQRLREMAFLTKGLRIVLKDEREDSKKEKTFHYEGGIREFVTYLNRSKESLY 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +G +D +++++AM+ ND Y EN F NNI +GGTH+ G R+ALT+ Y Sbjct: 243 PEVIYCEGEKDGVAVEVAMQHNDSYTENSYGFVNNINTPEGGTHIVGFRNALTKTFNDYA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K + ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V+ V+ L Sbjct: 303 RKNKLLKDSEPNLSGDDIREGLTAIVSVKIEEPQFEGQTKQKLGNSEARGAVDFVVSRQL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE++P AK V+K + A R+AAR+ARDLTRRK LD +LPGKLADCS++DPK Sbjct: 363 EIFLEQNPTVAKATVEKSVLAQRAREAARKARDLTRRKSALDGMALPGKLADCSDKDPKN 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK R+R QAILPLRGKILNVE+AR D++ S+ EI +ITA GTG Sbjct: 423 CEIYIVEGDSAGGSAKTARNRATQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 483 I-HDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYKV 541 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y D+ L L G + L Sbjct: 542 EKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWE 587 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G ++ DI R + + ++G+ I + + R I++ Y L Sbjct: 481 TGIHDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAQPPLYK 540 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + IGR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 541 VEKNKKVWYAYDDAELNSILEQIGRDNNNKIQRYKGLGEMDAEQLWETTMDPEKRILLRV 600 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + +++ + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 601 TMDESATSEIDLTFTTLMGDKVEPRREFIEENARFVENLDI 641 >gi|302384449|ref|YP_003820271.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1] gi|302195077|gb|ADL02648.1| DNA gyrase, B subunit [Clostridium saccharolyticum WM1] Length = 637 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 395/585 (67%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 SQEYGADQIQILEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNAVDEALAGYCDSIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S TV D+GRGIP + K+ GI A EV T LHAGGKF YKVSGGLHGVG S Sbjct: 61 IIHPDNSVTVVDDGRGIPVGIQKKAGIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I+++G IY+ + G PL V G ++ GT+VTFLP +IF Sbjct: 121 VVNALSQWLEVEIRQDGKIYKQRYEKGKTMYPLKVIGECGPDEHGTKVTFLPDGEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++YDTL+ RLRE +FL +++I L D+R + + Y+GGI+ F++YL++ K PL Sbjct: 181 VYDYDTLKIRLRETAFLTKNLKIILRDEREDKHEHV-FHYEGGIKEFITYLNKGKTPLYD 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G++D + +++AM+ ND Y EN+ F NNI +GGTHL+G ++ALT + Y Sbjct: 240 QVFYCEGTKDGVYVEVAMQHNDSYTENIYSFVNNINTPEGGTHLAGFKNALTTTLNDYAR 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K+++ ++ G+D REG T+++S+K+ +P+F QTK+KL +SE R V++ + + + Sbjct: 300 KNRLLKENETNLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDNLLREQFT 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P +K I K + A R AAR+ARDLTRRK L+ +LPGKLADCS+++P+ Sbjct: 360 YYLEQNPSLSKTICDKSILAQRARAAARKARDLTRRKTALEGMALPGKLADCSDKNPENC 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 420 EIYIVEGDSAGGSAKTARSRNTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FD++KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 480 HED-FDLSKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKVE 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y +E L L G + L Sbjct: 539 KNKKVWYAYSDEELNAILKEIGRDNNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 12/162 (7%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILS 706 H + S + +I + ++G+ I + + R + I+E Y L Sbjct: 478 GIHEDFDLSKLRYHKII--IMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLY 535 Query: 707 LICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + K+ L+ I GR + +QRYKGLGEM+A QLWETT++P+ R LLR Sbjct: 536 KVEKNKKVWYAYSDEELNAILKEIGRDNNNKIQRYKGLGEMDAEQLWETTMDPERRVLLR 595 Query: 765 VKI-TDAS-QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 V + D + + D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 596 VIMNEDTTSEMDLTFTTLMGDQVEPRREFIEANAKYVQNLDI 637 >gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus casseliflavus ATCC 12755] gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus casseliflavus ATCC 12755] Length = 649 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ ++ +YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ +EG +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ FN+D L R+REL+FLN ++IS+ DKR +P Y GGI+++V Sbjct: 179 VPDPEIFTETTEFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + PI ++G + I+++++M++ D YH N+L F NNI +GGTH G ++ Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y KS K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P + +V+K L AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ Y++ ++ E L N S + ++ + Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPTVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPDNRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+ QLWETT++PD R +LRV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 TVQRYKGLGEMDDHQLWETTMDPDNRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20] gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20] Length = 649 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 293/650 (45%), Positives = 417/650 (64%), Gaps = 9/650 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ ++ +YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEEKSLVERAKAYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFASSIQVIIEPDNSITVVDDGRGIPVDIQAKTGRPAVETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ +EG +Y + G + + L V + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVKVYKEGKVYYQEYHRGAVVDDLKVIDET-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF+ FN+D L R+REL+FLN ++IS+ DKR +P Y GGI+++V Sbjct: 179 VPDPEIFTETTVFNFDKLATRVRELAFLNRGLKISIEDKREEKPVLKEYHYDGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + PI ++G + I+++++M++ D YH N+L F NNI +GGTH G ++ Sbjct: 239 HLNASKTVIFPDPIYLEGEQQGITVEVSMQYTDSYHSNLLSFANNIHTYEGGTHEFGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y KS K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+ Sbjct: 299 ALTRVINDYARKSKLMKENDENLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRT 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V + ++ + +L E+P + +V+K L AS R AA+RAR++TRRKG L+I++LPGKL Sbjct: 359 VTDRLFSEHFTKFLMENPNVGRQVVEKGLLASKARQAAKRAREMTRRKGALEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS DP+K ELF+VEGDSAGGSAKQGRSRE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDPEKCELFIVEGDSAGGSAKQGRSREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PPLYG+ +GK++ Y++ ++ E L N S + ++ + Sbjct: 538 YIAQPPLYGVKQGKNIHYIQPGKNAEQDLKNTIESLPATPKPSVQRYKGLGEMDDHQLWE 597 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + IE I + + + + N Sbjct: 598 TTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEENAHYVKNL 647 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P+ R +LRV + DA +AD +F LMGD VEPRR FI+E Sbjct: 580 SVQRYKGLGEMDDHQLWETTMDPENRMMLRVSVDDAIEADQIFEMLMGDRVEPRRAFIEE 639 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 640 NAHYVKNLDI 649 >gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916] gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto] gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916] gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto] Length = 637 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ ++REG+I++ F GI L + G + GT++ F P + Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL HRLREL+FLN ++ISL D+R + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL + EVR +V++ V Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++LEE+P KII++K L AS R+AA+RAR+LTRRK +L+ SLPGKL+DCS + Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PP Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV + L+ L+ + G ++ L Sbjct: 535 LYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + I + + + +I + L + +G K ++QR Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+ Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|148378017|ref|YP_001252558.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 3502] gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397] gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall] gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502] gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397] gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall] gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065] Length = 637 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ ++REG+I++ F GI L + G + GT++ F P + Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL HRLREL+FLN ++ISL D+R + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL + EVR +V++ V Sbjct: 296 NDYARKFNYLKDTDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++LEE+P KII++K L AS R+AA+RAR+LTRRK +L+ SLPGKL+DCS + Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PP Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV + L+ L+ + G ++ L Sbjct: 535 LYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585 Score = 185 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + I + + + +I + L + +G K ++QR Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKEIYVYSDPELDAALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+ Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|167746702|ref|ZP_02418829.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662] gi|167653662|gb|EDR97791.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662] Length = 637 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 255/618 (41%), Positives = 372/618 (60%), Gaps = 8/618 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + +YDA+SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G+ D I Sbjct: 1 MSSQNYDANSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEFLAGHCDEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVTL DG+ + DNGRGIP ++++ G+SA E++ T LHAGGKF YK+SGGLHGVG Sbjct: 60 TVTLKDDGTAVIEDNGRGIPVGINEQTGLSAVEMVFTMLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS+WLK+ +K++GNIYE F G + PL VTGS ++TGT+V FLP +IF Sbjct: 120 ASVVNALSTWLKVTVKQDGNIYEECFERGKVTEPLRVTGSCRKSETGTKVRFLPDPEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F +++RL E ++LN ++I I++RS E E+ GI A+V L+ K L Sbjct: 180 KTYFKAAMIRNRLHETTYLNPELKIHYINERSGEETEVLYHEPEGICAYVKKLNDGKHVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 P+ + + I ++A ++ + + EN+L F NNI +GGTH++G +S T + Y Sbjct: 240 H-DPVYYKRDINGIEAEIAFQYTEDFGENILGFCNNIYTTEGGTHITGFKSKFTAVMNQY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ + G D R G T+++S+K P+PRF QTK KL + + VV D Sbjct: 299 ARELGILKEKDTNFTGADVRNGMTAIISVKHPEPRFEGQTKTKLDNPDANKVVSEITGDE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +++ K ++ ++ +R A +A+ + L I S GKL++C R P+ Sbjct: 359 TVLFFDKNLDTLKKVLACAEKSAKIRKAEEKAKTNLLVRQKLSIDS-NGKLSNCESRKPE 417 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I G Sbjct: 418 ECEIFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKATMDKVLANAEIKTMINTFGC 477 Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + + FDI KLRY KI+IMTDADVDGAHI TLLLTFF+R MP LI +G +Y+ PP Sbjct: 478 GFSEGYGNDFDIEKLRYQKIVIMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPP 537 Query: 541 LYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY I + Y+ D+ +LE Y ++ + + + +D + K Sbjct: 538 LYKAIPKKGKETYLFDDTALEKYKAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLK 597 Query: 600 LIKDFYPNHDKTFIEQAV 617 I+ + Sbjct: 598 QIEIEDARMASDVTSMLM 615 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 15/269 (5%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + E++ + L+ Q LS + + + FI + K Sbjct: 376 CAEKSAKIRKAE-EKAKTNLLVRQKLSIDSNGKLSNCESRKPEECEIFIVEGDSAGGSAK 434 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E V +++ +N + + + + Sbjct: 435 TARNRRTQAIL--PIRGKILNVEKATMDKVLANAEIKTMINTFGCGFSEGYGNDFDIEKL 492 Query: 663 LVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSLI---CNGDKIK 715 ++I + ++G+ I + F ++ T G + Sbjct: 493 RYQKIV--IMTDADVDGAHIATLLLTFFYRFMPELITHGHVYLATPPLYKAIPKKGKETY 550 Query: 716 ITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + +L KG ++QRYKGLGEM+ASQLWETTL+P+TR+L +++I DA A Sbjct: 551 LFDDTALEKY--KAAHKGPFTLQRYKGLGEMDASQLWETTLDPETRTLKQIEIEDARMAS 608 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSALDI 803 D+ S LMG EV PRR+FI +N+ + LDI Sbjct: 609 DVTSMLMGSEVPPRRQFIYDNAEDAMLDI 637 >gi|219850524|ref|YP_002464957.1| DNA gyrase subunit B [Chloroflexus aggregans DSM 9485] gi|219544783|gb|ACL26521.1| DNA gyrase, B subunit [Chloroflexus aggregans DSM 9485] Length = 636 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 279/591 (47%), Positives = 395/591 (66%), Gaps = 9/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YD IQ+L+G++AV+KRP MYIG TD +GLH M+ EV+DN++DE + G Sbjct: 1 MTNETPT-TYDESQIQVLEGMEAVRKRPGMYIGPTD-INGLHTMVREVVDNSVDEVMAGR 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ++VT++ DGS TVSD+G GIP +H +EGIS ++MTRLHAGGKF YKVS GL Sbjct: 59 ATSVSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVS VNALSS++++ + R G Y + G+ ++ + GT FLP + Sbjct: 119 HGVGVSAVNALSSYMRVDVYRNGRHYYQEYRAGVPVTDVIDL-EPTDRHGTTTRFLPDTS 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I D+N+DTL R RE+S+LN ++ +D+R+ RE+ +++GGI ++V +L++ K Sbjct: 178 IIQTLDYNFDTLAQRFREMSYLNKGLRFKFVDERT--NRELNFYFEGGIVSYVRHLNKDK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L + P ++ D + +++A+++ D + +NV F NNI DGG+HLSG R+ALTR Sbjct: 236 VVLHRQPFYVERVVDEVMVEVALQYTDTFDTDNVYTFANNINNSDGGSHLSGFRTALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E S V + Sbjct: 296 INSYARAKGLLKENESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVATV 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 D SAWL+E+P +A+ I++K + A+ R A ++ R+ T RK ++ SLPGKLADCS+ Sbjct: 356 FGDAFSAWLDENPADARRIIEKAITAARTRLAVQKVRE-TARKSAMEGFSLPGKLADCSD 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +P + EL++VEGDSAGG+AKQGR R QAILPLRGKILNVE++R D+MLS+ E+ LIT Sbjct: 415 PNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEVRALIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GT IG D FD++KLRYH+I +MTDADVDG+HIRTLLLTFFFR M LI NG L+I +P Sbjct: 475 AIGTSIG-DQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHLFIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY I G+ Y + + YL ++ G ++ L Sbjct: 534 PLYRIKHGREQVYTYSDAERDAYLSKLPPGTKVEIQRYKGLGEMNAEQLWE 584 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +QRYKGLGEMNA QLWETT+NP R +L+V + DA++AD+ F+ LMGD V PRR FIQ Sbjct: 566 VEIQRYKGLGEMNAEQLWETTMNPQNRVILQVTLEDAARADETFTMLMGDLVPPRRRFIQ 625 Query: 794 ENSLP-SALDI 803 ++ LDI Sbjct: 626 THANEVVELDI 636 >gi|309791890|ref|ZP_07686373.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6] gi|308226062|gb|EFO79807.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6] Length = 636 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 278/592 (46%), Positives = 387/592 (65%), Gaps = 11/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + SYDA I +L+GLDAV+KRP MYIG TD +GLHHMI EV+DN++DE+L GY Sbjct: 1 MT--TEPQSYDASQITVLEGLDAVRKRPGMYIGPTD-INGLHHMIKEVVDNSVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD IT+T+ DGS V+DNGRGIP D+H + +SA ++ T LHAGGKF YKVS GL Sbjct: 58 ADTITITIFADGSVQVTDNGRGIPVDIHPKHQVSALQLAATELHAGGKFGDGGYKVSSGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS W++ ++R ++ + G P+V G A TGT + F+P Sbjct: 118 HGVGLSVVNALSEWMRAEVRRHDKLWLQEYRTGKPQGPVVAVGEAE-GTGTSIHFMPDVT 176 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF D+ + + RLRE+++L ++ + E++ +++GGI ++V +L++ Sbjct: 177 IFKDGIDYQFRVVAQRLREMAYLTKGLR--FKFEDQRTQNEVSFYFEGGIISYVRHLNKA 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L + P ++ + +++++AM++ D Y +++ F NNI DGG HLSG R+ALTR Sbjct: 235 KGALHRLPFYVERTVGEVAVEVAMQYTDTYDTDSIYAFANNINNTDGGAHLSGFRTALTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y K++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS E S V + Sbjct: 295 VINTYARNKNLLKENDANLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAASAVGT 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + D WL+E+P EA+ I++K + A+ R A ++ RD T RK +D SLPGKLADCS Sbjct: 355 VMGDAFGTWLDENPTEARRIIEKAVSAARTRLAVQKVRD-TARKSAMDGFSLPGKLADCS 413 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 + +P +SEL++VEGDSAGG+AKQGR R QAILPLRGKILNVE++R DKMLS+ E+ LI Sbjct: 414 DSNPARSELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRIDKMLSNAEVKALI 473 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+G IG+ F KLRYH+II+M DADVDG+HIRTLLLTFFFR M LI +G LYI + Sbjct: 474 TAIGASIGE-LFSTEKLRYHRIILMADADVDGSHIRTLLLTFFFRHMRQLITSGHLYIAQ 532 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589 PPLY I G+ Y + + YL ++ G ++ L Sbjct: 533 PPLYRIKHGREQVYTYSDAERDSYLAKLPAGTKADIQRYKGLGEMNAEQLWE 584 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETTLNP R +L+V + DA QAD+ F+ LMGD V PRR FIQ + Sbjct: 568 IQRYKGLGEMNAEQLWETTLNPANRIILQVTLEDAQQADETFTMLMGDLVPPRRRFIQTH 627 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 628 ASEVRDLDI 636 >gi|290889525|ref|ZP_06552615.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429] gi|290480723|gb|EFD89357.1| hypothetical protein AWRIB429_0005 [Oenococcus oeni AWRIB429] Length = 652 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 285/639 (44%), Positives = 400/639 (62%), Gaps = 9/639 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N+SY SIQIL+GL+AV+KRP MYIG T SGLHH+++E++DN IDE+L G+A +T+ Sbjct: 15 NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D S T++D+GRG+P ++ + G A E + T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 74 TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VVNALS + +R+ R+ IY M F G + + + GT V F P DIF Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y TL R+REL+FLN +++S+ DKR + + Y+GGI +V +L+++K+PL Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSITDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ ++G + I +++A+++ D E ++ F NNI +GGTH +G + ALTR I Y Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFANNIHTHEGGTHETGFKMALTRIINDYA 313 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K K + G+D REG T+++SIK PDP+F QTK KL +++ + VV + Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQVVNHQFSTIF 373 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + ++ E+P A+ I K L AS R AA++ARDLTR+K L+I++L GKLAD + RDP+ Sbjct: 374 NRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543 G++ FDI+K YHK+IIMTDADVDGAHIRTLLLT FFR M LI G++YI +PPLYG Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552 Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 I Y+ +E L+ Y S + G + L + D + + Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 P + + E +E A + + Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLW+TT++P R LLRV + D F LMGD VEPRREFI++N Sbjct: 584 IQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDN 643 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 644 AQFVEDLDV 652 >gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] Length = 653 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 270/597 (45%), Positives = 378/597 (63%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + +Y +D IQ+LKGL+ V+KRP MYIG T G GLHH++YE+LDNA+DE+ GYA Sbjct: 5 ESASSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGYAS 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 I V L+ D S +++DNGRGIPTDLH+ SA E ++T LHAGGKF Y VSGGL Sbjct: 64 KINVVLHSDNSISITDNGRGIPTDLHQVTKKSALETVLTVLHAGGKFGGSNSGYSVSGGL 123 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G Y+ + G L ++ + + GT + F P Sbjct: 124 HGVGLSVVNALSEELEVTVWRDGKEYQQKYSRGNPVTTLMCYELSAESKDQKGTRIRFWP 183 Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234 ++F+ F+Y+T+ R+REL+FLN + ISL + + + + FY GG+ +V+ Sbjct: 184 DKEVFTTEIQFDYNTVGGRVRELAFLNPKLAISLKKEDNDPEKNQYDEHFYAGGLIEYVN 243 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KK L + + D I+ID+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 244 WLNTDKKSLH-DVVSFRKEVDGIAIDMALQWCSDAYSDTILGYANSIRTVDGGTHIDGVK 302 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR + ++ +KS K S+ G+ REG T ++S+K+P P F QTK +L + EVR Sbjct: 303 ASLTRTLNNFGKKSKVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVR 362 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VVE V + L+ +LE HP I+ K L+A AA+RAR+L R+K VL +SLPGK Sbjct: 363 KVVEQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 422 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS DP++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER + M ++E Sbjct: 423 LADCSSTDPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEEAMYKNEE 482 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI ALG G+ + F + LRYH+III+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 483 IQNLILALGLGVKGEDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 542 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK + Y D+ L + + G + L Sbjct: 543 IYVGVPPLYKVERGKQVYYCFDDAELRKVQSSFPQNASYNMQRFKGLGEMMPAQLWE 599 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 124/341 (36%), Gaps = 45/341 (13%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 K+I D + G H+R L ++PS G P + + +Y+ + Sbjct: 317 KVIKDKDISLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVEQSVQEYLTEY 376 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611 L +++ LS+ + + +L + + + + + D P + Sbjct: 377 LELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTDPEESEI 436 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV------- 664 FI + +G + ++ LN E + + IL Sbjct: 437 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEEAMYKNEEIQNLILALGLGVKG 496 Query: 665 ----KRIARGVQEQFVLEGS--------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710 K R + + + + +F +Y+R + I + + Sbjct: 497 EDFKKDALRYHRIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVERG 556 Query: 711 GDKIKITGPCSLLDTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRS 761 L RK +MQR+KGLGEM +QLWETT++P+ R Sbjct: 557 KQVYYCFDDAEL--------RKVQSSFPQNASYNMQRFKGLGEMMPAQLWETTMDPEQRL 608 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L ++ + DA++A +FS LMG V+ R+E IQ+ + +D Sbjct: 609 LKQLVVEDAAEASVVFSSLMGTRVDGRKELIQKAARMINVD 649 >gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPAADLKVIGETDH-TGTITRFKPDPEIFKETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++ + DKR + ++ Y+GGI+++V +L+R K P+ + Sbjct: 179 EYDFDTLATRMRELAFLNRNIKLIIEDKRENKQKKE-FHYEGGIKSYVEHLNRSKAPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPSIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+II+TDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIITDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAHPKPGIQRYKGLGEMNPTQLWE 581 Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats. Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 6/199 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKARYHKVIII 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY-IAQPPLFKVQQGKKIQYAYNDKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAHPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLPS-ALD 802 VEPRR FIQEN+ LD Sbjct: 614 VEPRRNFIQENAKYVKNLD 632 >gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra] gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra] Length = 637 Score = 585 bits (1508), Expect = e-164, Method: Composition-based stats. Identities = 298/591 (50%), Positives = 401/591 (67%), Gaps = 8/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 1 MSQE-NKQVYDESQIQVLEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H + A EVIMT LHAGGKF YKVSGGL Sbjct: 59 CTHIEVFIHKDNSITVVDDGRGMPVGMHSKVKKPAVEVIMTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ ++REG+I++ F GI L + G + GT++ F P + Sbjct: 119 HGVGASVVNALSEQCEVEVRREGHIWKQKFERGITKTGLDIVGDTEDH-GTKIYFKPDIE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F YDTL HRLREL+FLN ++ISL D+R + Y+GG+ +FV YL+R+K Sbjct: 178 IFDELEFEYDTLAHRLRELAFLNKGIKISLTDERYDKK--EMFHYEGGLRSFVLYLNRNK 235 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L Q PI + ++D +++AM++NDGY EN+ F NNI +GGTHL+G +SALTR I Sbjct: 236 EKLHQQPIYVDENKDGCIVEIAMQYNDGYAENIFSFANNIDTIEGGTHLAGFKSALTRVI 295 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ GDD REG T+V+S+K+ DP+F QTK KL + EVR +V++ V Sbjct: 296 NDYARKFNYLKDIDKNLSGDDVREGLTAVISVKLTDPQFEGQTKTKLGNGEVRGIVDTIV 355 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++LEE+P KII++K L AS R+AA+RAR+LTRRK +L+ SLPGKL+DCS + Sbjct: 356 GQSIGSFLEENPNVGKIIIEKGLSASRAREAAKRARELTRRKSILESTSLPGKLSDCSSK 415 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E++LVEGDSAGGSAKQGR+RE QAILPL+GKI+NVE+ R DK+L+S EI +ITA Sbjct: 416 DPSLCEIYLVEGDSAGGSAKQGRNREFQAILPLKGKIMNVEKQRLDKILASDEIRAMITA 475 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG++ FDI+K+RY++IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PP Sbjct: 476 FGAGIGKE-FDIDKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELIEEGHVYIAQPP 534 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 LY I + K YV + L+ L+ + G ++ L Sbjct: 535 LYRIYKAKKETYVYSDPELDAALLELGGKDTNTNIQRYKGLGEMNPEQLWE 585 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILASDEIRAMITAFGAGIGKEFDIDKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + I + + + + + L + +G K ++QR Sbjct: 512 LTFFYRYMKELIEEGHVYIAQPPLYRIYKAKKETYVYSDPELDAALLELGGKDTNTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS-L 797 YKGLGEMN QLWETT++P+ R+LL+V + DA +AD++F+ LMG +VEPRR+FI+ N+ Sbjct: 572 YKGLGEMNPEQLWETTMDPEHRTLLQVTVEDAMEADEIFTILMGTKVEPRRDFIESNADK 631 Query: 798 PSALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk] Length = 627 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 281/585 (48%), Positives = 401/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+G I+ + G+ L V G + TGT F P S+IF+ Sbjct: 120 VVNALSTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D F I K RYHK+IIMTDADVDGAHIRTLLL FF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLMFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 5/194 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ + I + ++ Sbjct: 437 RHFQAIL--PLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIM 494 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + +F + + I I L + G KI+ L+ I Sbjct: 495 TDADVDGAHIRTLLLMFFYRYMRQIIECGYIY-IAQPPLFKVQQGKKIQYAYNNKELEKI 553 Query: 727 FSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+ Sbjct: 554 LAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDK 613 Query: 785 VEPRREFIQENSLP 798 VEPRR FIQEN+ Sbjct: 614 VEPRRNFIQENAKY 627 >gi|219684407|ref|ZP_03539351.1| DNA gyrase, B subunit [Borrelia garinii PBr] gi|219672396|gb|EED29449.1| DNA gyrase, B subunit [Borrelia garinii PBr] Length = 634 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 283/639 (44%), Positives = 419/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDKIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+G I+ +F GI + + V G + GT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNRDGKIFRQTFSKGIPTSKVEVVGESSIM-GTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + I++ DKR+ + + +++GGI++FV YL + K Sbjct: 180 FDVLEKRLKELAFLNDKIYITIEDKRAGKEKSSKFYFEGGIKSFVDYLTKDSKAFQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE II++K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NSNPLEIDIILEKAIRAARAREAARKARESERKKNAFESLALPGKLADCASKNPSEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY + Sbjct: 480 -FDITKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKMKYDN 538 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFC---DSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y DE+ E +L + +F G ++ L +D + Sbjct: 539 RIYYFYDEKEKEKFLDSIESKNRNNIFLQRYKGLGEMNPTQLWET-----TMDPSRRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKVIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I S R I +Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKMKYDNRIYYFYDEKEKEKFLDSIESKNRNNIFLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPSRRKMRLINIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|28412562|gb|AAO39047.1| coumermycin-resistant GyrB [synthetic construct] Length = 634 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 284/639 (44%), Positives = 416/639 (65%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDRIDVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKF++ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFDKDTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + +G I+ +F GI + + V G + TGT+VTFL S+IF D+N Sbjct: 121 NALSSFLEVYVNIDGKIFRQTFSKGIPTSKVEVVGESS-VTGTKVTFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + + +++GGI++FV YL K P Sbjct: 180 FDVLEKRLKELAFLNDKIYISIEDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G +++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFINDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE+R +VE V + L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHKIIIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + IE I + + + N +N Sbjct: 594 LMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K++ + ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFDITKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F I + I + + + LD+I + R IS+Q Sbjct: 508 LAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSISLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT++P R + + I DA +A+ +F LMGD VEPR+EFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNAL 627 Query: 798 PS-ALDI 803 LD+ Sbjct: 628 NVINLDV 634 >gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis] gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis] Length = 732 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 271/599 (45%), Positives = 372/599 (62%), Gaps = 16/599 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + +Y +D IQ+LKGL+ V+KRP MYIG T G GLHH++YE+LDNAIDE+ GYA Sbjct: 84 ESASSKAYGSDQIQVLKGLEPVRKRPGMYIGST-GPRGLHHLVYEILDNAIDEAQAGYAS 142 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 + V L+ D S ++SDNGRGIPTDLH SA E ++T LHAGGKF Y VSGGL Sbjct: 143 RVDVILHSDNSVSISDNGRGIPTDLHPVTKKSALETVLTVLHAGGKFGGSNSGYSVSGGL 202 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-----PLVVTGSAGNDTGTEVTF 175 HGVG+SVVNALS L++ + R+G Y + G L V + + GT V F Sbjct: 203 HGVGLSVVNALSEGLEVTVWRDGMEYRQRYSRGNPVTILMCHSLAV--ESRDRQGTCVRF 260 Query: 176 LPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAF 232 P ++F+ +F+Y+T+ R+REL+FLN + I+L + + + + FY GG+ + Sbjct: 261 WPDKEVFTTAIEFDYNTIAGRVRELAFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEY 320 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSG 291 V +L+ KKPL + D I+ID+A++W D Y + +L + N+I DGGTH+ G Sbjct: 321 VKWLNTDKKPLHDVVGFGK-EIDGITIDMALQWCSDAYSDTILGYANSIRTIDGGTHIDG 379 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 +++LTR + S +KS K+ ++ G+ REG T ++S+K+P P F QTK +L + E Sbjct: 380 FKASLTRTLNSLGKKSKIIKEKDINLSGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPE 439 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR VV+ V + L+ +LE HP I+ K L+A AA++AR+L R+K VL +SLP Sbjct: 440 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKKARELVRQKSVLRTSSLP 499 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS +P++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M + Sbjct: 500 GKLADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKN 559 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L Sbjct: 560 EEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFEE 619 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G +Y+ PPLY + RGK + Y DE L+ + + G + L Sbjct: 620 GCIYVGVPPLYKVERGKQVYYCYDEAELKKLRSSFPQNASYNIQRFKGLGEMMPLQLWE 678 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 121/341 (35%), Gaps = 45/341 (13%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 KII D ++ G H+R L ++PS G P + + +Y+ + Sbjct: 396 KIIKEKDINLSGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEY 455 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK-----DFYPNHDKT 611 L +++ LS+ + + +L K P + Sbjct: 456 LELHPDVLDSILSKSLNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTNPEESEI 515 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663 FI + +G + ++ LN + + + IL Sbjct: 516 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 575 Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710 K+ A + +L + + +F +Y++ I + + Sbjct: 576 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPLYKVERG 635 Query: 711 GDKIKITGPCSLLDTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRS 761 L +K ++QR+KGLGEM QLWETT++P+ R Sbjct: 636 KQVYYCYDEAEL--------KKLRSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRL 687 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L ++ + DA++A+ +FS LMG V+ R+E IQ ++ +D Sbjct: 688 LKQLVVEDAAEANVVFSSLMGARVDVRKELIQSSARAVNID 728 >gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus] Length = 632 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 288/585 (49%), Positives = 404/585 (69%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP M IG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMCIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 91/466 (19%), Positives = 158/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L I G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKIQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENARYVKNLD 632 >gi|12044853|ref|NP_072663.1| DNA gyrase subunit B [Mycoplasma genitalium G37] gi|255660024|ref|ZP_05405433.1| DNA gyrase subunit B [Mycoplasma genitalium G37] gi|1346242|sp|P47249|GYRB_MYCGE RecName: Full=DNA gyrase subunit B gi|497647|gb|AAA57071.1| DNA gyrase subunit B [Mycoplasma genitalium] gi|1045671|gb|AAC71219.1| DNA gyrase, B subunit [Mycoplasma genitalium G37] gi|166078727|gb|ABY79345.1| DNA gyrase, B subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 650 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 258/601 (42%), Positives = 375/601 (62%), Gaps = 15/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N + + YD+ SI++L+GL+AV+KRP MYIG T GE GLHHMI+E++DN+IDE++ G+ Sbjct: 1 MEENNKANIYDSSSIKVLEGLEAVRKRPGMYIGST-GEEGLHHMIWEIVDNSIDEAMGGF 59 Query: 61 ADIITVTLNMDGSCT-VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A + +TL D T V D+GRGIP D+H + S E + T LHAGGKF+ SYKVSGG Sbjct: 60 ASFVKLTL-EDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDSYKVSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS K+ + R+ Y +SF + G + LV G++ + GT V F+P Sbjct: 119 LHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKVIGDLVQEGNSEKEHGTIVEFVPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + D+ + RL++L+FLN ++I +D R P+ + Y GG+ ++ +L+ Sbjct: 179 FSVMEKSDYKQTVIVSRLQQLAFLNKGIRIDFVDNRKQNPQSFSWKYDGGLVEYIHHLNN 238 Query: 239 HKKPLMQSPIRIQ----------GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 K+PL I + + +++A ++N Y++++ F NNI +GGTH Sbjct: 239 EKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQYNKTYNQSIFSFCNNINTTEGGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + G R+AL + I + ++ K + DD EG T+++SIK P+P++ QTK+KL Sbjct: 299 VEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLG 358 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V S V++ ++ E+P EA I++K L A R ++ AR+LTRRK D Sbjct: 359 NTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSG 418 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADC+ RDP SEL++VEGDSAGG+AK GR R QAILPLRGKILNVE++ F+++ Sbjct: 419 SLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQI 478 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ++ EI L+ A+G GI + F++ KLRY KI+IMTDADVDGAHIRTLLLTFFFR M L Sbjct: 479 FNNAEISALVMAIGCGI-KPDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPL 537 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 + G ++I +PPLY ++ Y+ + LE + + G + L Sbjct: 538 VEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNPNVKFGLQRYKGLGEMDALQLW 597 Query: 589 N 589 Sbjct: 598 E 598 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P R+LL+V + DAS AD FS LMGDEV PRREFI++N Sbjct: 582 LQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKN 641 Query: 796 SLPS-ALDI 803 + +DI Sbjct: 642 ARSVKNIDI 650 >gi|226326150|ref|ZP_03801668.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758] gi|225205692|gb|EEG88046.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758] Length = 648 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 296/587 (50%), Positives = 391/587 (66%), Gaps = 4/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY D I Sbjct: 10 NMSAEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSVDEALAGYCDHI 68 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 69 QVFINPDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVG 128 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I EG +Y + G + L V TGT+VTFLP IF Sbjct: 129 ASVVNALSDWLEVEICHEGKVYRQRYEKGHVVYKLKVVDECDPEKTGTKVTFLPDETIFE 188 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+YDTL+ R RE++FL ++ISL D R EP+E Y+GGI+ FV YL+R K PL Sbjct: 189 DTVFDYDTLKQRFREMAFLTKGLRISLTDLRDEEPKERVFHYEGGIKEFVQYLNRSKTPL 248 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I +G++DN+ +++AM+ ND Y +N F NNI +GGTH+ G R+A+T+ Y Sbjct: 249 YEQIIYCEGTKDNVEVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNAITKTFNDY 308 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+S V+ Sbjct: 309 ARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDSIVSSQ 368 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +LE++P K IV+K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DP Sbjct: 369 LQIFLEQNPAIGKSIVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPS 428 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ + EI +ITA GT Sbjct: 429 KCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGT 488 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY Sbjct: 489 GI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 547 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + K + Y +E L + + G + L + Sbjct: 548 LEKNKKVWYAYSDEELAKIISEVGRDQNNKIQRYKGLGEMDAEQLWD 594 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G ++ DI R + + ++G+ I + + R I++ Y L Sbjct: 488 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 547 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L I S + + +QRYKGLGEM+A QLW+TT++P R L RV Sbjct: 548 LEKNKKVWYAYSDEELAKIISEVGRDQNNKIQRYKGLGEMDAEQLWDTTMDPQHRILRRV 607 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 608 TMDDETSSELDLTFTTLMGDKVEPRREFIEENAKFVKNLDI 648 >gi|47458936|ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 163K] gi|47458264|gb|AAT27587.1| DNA gyrase subunit b [Mycoplasma mobile 163K] Length = 647 Score = 584 bits (1506), Expect = e-164, Method: Composition-based stats. Identities = 272/625 (43%), Positives = 398/625 (63%), Gaps = 17/625 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ N++Y +IQ+L+GL+AV+KRP MYIG T G+ GLHH+I+E++DN+IDE++ G+A+ Sbjct: 5 DDMSNNNYSGKNIQVLEGLEAVRKRPGMYIG-TTGKKGLHHLIWEIVDNSIDEAMAGHAN 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TLN +G + DNGRGIPTD+H++ G SA E ++T LHAGGKF++ +YKVSGGLHG Sbjct: 64 QVKITLNKNGYAIIEDNGRGIPTDIHEKTGKSAVETVLTVLHAGGKFDKDTYKVSGGLHG 123 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDI 181 VG SVVNALS+ L++ +KREG ++ F G L + DTGT+++F P I Sbjct: 124 VGASVVNALSNHLEVWVKREGKLHYQEFRFGKPVKALNIISDVEESDTGTKISFFPDYSI 183 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +F YD + R +++++LN +++ L D+R EP +I +Y+GGI +V L+ KK Sbjct: 184 MDKNEFEYDVIVDRAKQIAYLNRGLKLILRDERQEEPEDIEFYYEGGIIEYVEALNISKK 243 Query: 242 PLMQSPIRIQGSRD----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 L ++ I +G +I++++A+++ D Y N++ + NNI +GGTH G AL Sbjct: 244 ALHENVIYAEGKEVGDEGDITVEVALQYTDSYQPNIVSYANNISTIEGGTHEQGFVDALI 303 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R +Y ++ K DK + DD REG T+++SIK DP F QTK KL + + R+ Sbjct: 304 RIFNNYAGENKLMKNDKEKLTRDDIREGLTAIISIKHVDPVFEGQTKAKLGNKDARTATN 363 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 ++ L +L E+P +AK+I++KVL + +R +A AR+ T +K I+SLPGKLADC Sbjct: 364 KVLSSVLYKFLLENPDQAKVIIEKVLFSQKIRFSASAAREATIKKNSFGISSLPGKLADC 423 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S ++ + SEL++VEG+SAGGSAK GR RE QAILPLRGK++N E+A K+ + EI +L Sbjct: 424 STKNAEISELYIVEGNSAGGSAKMGRDRETQAILPLRGKVINAEKANIVKVFENTEILSL 483 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTG+G F+INKLRYHK++IMTDADVDGAHIRTLLLTF + LI GF+YI Sbjct: 484 ITALGTGVG-PEFNINKLRYHKVVIMTDADVDGAHIRTLLLTFLYHHFRPLIEYGFIYIA 542 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY I+ GKS QY + E+ L ++ G + L Sbjct: 543 QPPLYKISYGKSFQYAFSDAEKEEVLKQLLPNQKATIQRYKGLGEMDPEQLW-------- 594 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGV 621 + + + IE A I+ + Sbjct: 595 -ETTMNPESRKMLQVQIEDAAIADL 618 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 38/65 (58%), Positives = 53/65 (81%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+ QLWETT+NP++R +L+V+I DA+ AD +FS LMG +V PRREFI++ Sbjct: 578 TIQRYKGLGEMDPEQLWETTMNPESRKMLQVQIEDAAIADLVFSTLMGGDVAPRREFIEK 637 Query: 795 NSLPS 799 N+ Sbjct: 638 NAKYV 642 >gi|225028834|ref|ZP_03718026.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353] gi|224953830|gb|EEG35039.1| hypothetical protein EUBHAL_03121 [Eubacterium hallii DSM 3353] Length = 643 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 305/643 (47%), Positives = 409/643 (63%), Gaps = 6/643 (0%) Query: 1 MSDNI--QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L Sbjct: 1 MSEEQISAAQEYGADQIQILEGLEAVRKRPGMYIGSTSS-KGLHHLVYEIVDNAVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ D + V +N D S TV DNGRGIP ++K++GI A EV+ T LHAGGKF YKVSG Sbjct: 60 GFCDTVKVYINEDNSITVRDNGRGIPVGINKKKGIPAVEVVFTILHAGGKFGGGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG SVVNALS+WL++ I EG IY + G + PL + G + GTEV FLP Sbjct: 120 GLHGVGASVVNALSTWLEVDIFHEGKIYRQRYERGKVMYPLKIVGDT-DKRGTEVRFLPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF F++ L+ RLRE++FL ++I L DKR E +T Y+GGI +V YL++ Sbjct: 179 PTIFEETVFDFSVLKQRLREMAFLTKGLKIVLKDKRPEENVALTFHYEGGIREYVEYLNK 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L I +G + ++ +++A++ ND Y+E V F NNI +GGTHL+G RSALT+ Sbjct: 239 SKEVLYPQVIYCEGKKGDVVVEVALQHNDSYNEGVYSFVNNITTPEGGTHLAGFRSALTK 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y K+ K ++++ GDD REG +++SIK+P+P+F QTK+KL +SE R V+S Sbjct: 299 TFNDYARKNKLLKDSEQNLTGDDIREGLVAIVSIKIPEPQFEGQTKQKLGNSEARGAVDS 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L+ +LE++P AKII +K + A R+AAR+ARDLTRRK LD SLPGKLADCS Sbjct: 359 VVSEQLTYFLEQNPNVAKIICEKAVLAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++DP+ E+++VEGDSAGGSAK RSR QAILPLRGKILNVE++R DK+L + EI +I Sbjct: 419 DKDPQNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIRAMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGI +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ + Sbjct: 479 TAFGTGIHED-FDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKEGHVYLAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + + K + Y +E L L + G + + L D K Sbjct: 538 PPLYKVEKNKKVWYAYSDEELNKILTDIGRDGNNKIQRYKGLGEMDASQLWETTMDPEKR 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 L + + E +E + A + N Sbjct: 598 ILLRVNMDDDAASELDMTFDTLMGDRVEPRREFIEANAKYVQN 640 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEEN----YLTILSL 707 G + DI R + + ++G+ I + + R + I+E L Sbjct: 483 TGIHEDFDITKLRYNKIIIMTDADVDGAHIATLLLTFLYRFMPDLIKEGHVYLAQPPLYK 542 Query: 708 ICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L + IGR G + +QRYKGLGEM+ASQLWETT++P+ R LLRV Sbjct: 543 VEKNKKVWYAYSDEELNKILTDIGRDGNNKIQRYKGLGEMDASQLWETTMDPEKRILLRV 602 Query: 766 KITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D AS+ D F LMGD VEPRREFI+ N+ LDI Sbjct: 603 NMDDDAASELDMTFDTLMGDRVEPRREFIEANAKYVQNLDI 643 >gi|224531788|ref|ZP_03672420.1| DNA gyrase, B subunit [Borrelia valaisiana VS116] gi|224511253|gb|EEF81659.1| DNA gyrase, B subunit [Borrelia valaisiana VS116] Length = 634 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 283/639 (44%), Positives = 414/639 (64%), Gaps = 11/639 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVS-VNGLHHLVYEVVDNSIDEALAGFCDKIDVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N+D + TV DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NLDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ I R+G I+ +F GI + + + G + TGT+V FL S+IF D+N Sbjct: 121 NALSSFLEVYINRDGKIFRQTFSKGIPTSKVEIVGESSI-TGTKVNFLADSEIFETLDYN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D L+ RL+EL+FLN + IS+ DKR + +++GGI++FV YL K Sbjct: 180 FDVLEKRLKELAFLNDKICISIEDKRFGREKSSKFYFEGGIKSFVDYLTNDSKAFQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I G D++ +++ ++W + Y +N+L F NNI ++GGTH+ G RS LT+ + + S Sbjct: 240 YIDGFLDDVIVNVGLKWTESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ GDD +EG T+V+S+K+P+P+F QTK KL +SE++ +VE V D L + Sbjct: 300 ISKKDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIKKIVEIIVYDHLLKII 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +PLE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 NLNPLEIDNILGKAIKAARAREAARKARESERKKNAFESLALPGKLADCASKNPLEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI KLRYHK+IIM DADVDG+HIRTLLL FFFR M LI NG++YI PPLY I Sbjct: 480 -FDIKKLRYHKVIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYVYIAMPPLYKINYDN 538 Query: 549 SLQYVKDEESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 + Y +E+ E +L + + + G ++ L +D + Sbjct: 539 RIYYFYEEKEKEKFLDSIETKNRNSISLQRYKGLGEMNPTQLWET-----TMDPARRKMR 593 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + +E I + + + N +N Sbjct: 594 LMNIDDAVEAEKIFVTLMGDLVEPRKEFIEQNALNVINL 632 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 1/83 (1%) Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 LD+I + R IS+QRYKGLGEMN +QLWETT++P R + + I DA +A+ +F LM Sbjct: 552 FLDSIETKNRNSISLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAVEAEKIFVTLM 611 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPR+EFI++N+L LD+ Sbjct: 612 GDLVEPRKEFIEQNALNVINLDV 634 >gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 632 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 282/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + R+ I+ + GI L V G + TGT F P S+IF+ Sbjct: 120 VVNALSTELEVFVHRDRKIHYQKYERGIPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DT R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTSATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL+ + Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 537 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 155/466 (33%), Gaps = 47/466 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTSATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 -------------WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + ++ V + F + + I I Sbjct: 468 TIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 632 >gi|13878524|sp|O29720|GYRB_ARCFU RecName: Full=DNA gyrase subunit B Length = 632 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 283/593 (47%), Positives = 395/593 (66%), Gaps = 17/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + Y A I++L L+AV+KRP MYIG G GLHH+++EV+DNA+DE+L GY Sbjct: 1 MSPDQTAVEYTAKDIEVLDDLEAVRKRPGMYIGGV-GVRGLHHLLWEVVDNAVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V+L+ DGS +V DNGRGIPT++H E G SA E++MT+LHAGGKF++K Y+VSGGL Sbjct: 60 CDTIKVSLHKDGSASVEDNGRGIPTEMH-ELGKSALEIVMTKLHAGGKFSKKVYRVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING----ILDNPLVVTGSAGNDTGTEVTFL 176 HGVGVSVVNALS WL++ +KR G IY + G + V G + GT V F Sbjct: 119 HGVGVSVVNALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETK-EHGTTVRFK 177 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P +IF +F Y+ + RL+EL++LN ++I L D+R + T ++ GI V L Sbjct: 178 PDREIFETTEFKYEIVAQRLKELAYLNRGLKIILFDEREGKE--ETFHFEDGIIGLVRSL 235 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R++KPL PI I+ ++D +S+++A+++ D EN+ F NNI +GG+H+ G R+ L Sbjct: 236 NRNRKPLH-EPIYIETTKDGVSVEVAIQFTDSDVENIQAFANNINTSEGGSHVVGFRAGL 294 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y +K K V G D REG T+V+S+K+P+P+F QTK KL +S+V++VV Sbjct: 295 TRAVNEYGKKH---LKKFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVV 351 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES V G+ WLEE+P +A+ ++ K + R+AA+RA++L +RK L I +LPGKLAD Sbjct: 352 ESAVYSGVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLAD 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS ++P++ ELF+VEG+SAGGSAKQ R R QAILP++GKI+NVE+A ++L + EI Sbjct: 411 CSSKNPEERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKA 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I+A+G GIG+D FDI K RY +IIIMTDADVDGAHIRTLLLTFF+R M LI +G+LYI Sbjct: 471 IISAIGAGIGKD-FDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +PPLY I +GK Y +E L+ L + G ++ L Sbjct: 530 AQPPLYQIKKGKKSYYAYSDEELKRTLEQ--VGGGEVQRYKGLGEMNPQQLWE 580 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 58/268 (21%), Positives = 95/268 (35%), Gaps = 6/268 (2%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + L K + N+ ++ D + ++ Sbjct: 370 AETLLNKFILNKKAREAAKRAKELVKRKNELITTLPGKLADCSSKNPEERELFIVEGESA 429 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + + + N E V ++ ++ I K + + Sbjct: 430 GGSAKQARDRRFQAIL---PIKGKIINVEKAGMARVLKNDEIKAIISAIGAGIGKDFDIT 486 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 ++ V + F + I S + + + Sbjct: 487 KARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYA 546 Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L T+ +G G +QRYKGLGEMN QLWETT+NP+ R L++V + DA +AD+L Sbjct: 547 YSDEELKRTLEQVG--GGEVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADEL 604 Query: 777 FSRLMGDEVEPRREFIQENSLPS-ALDI 803 FS LMG++VE RR FI +S LDI Sbjct: 605 FSILMGEDVESRRNFIMAHSKEVKNLDI 632 >gi|331083523|ref|ZP_08332635.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA] gi|330404216|gb|EGG83764.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA] Length = 641 Score = 584 bits (1505), Expect = e-164, Method: Composition-based stats. Identities = 299/590 (50%), Positives = 396/590 (67%), Gaps = 4/590 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS I+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY Sbjct: 1 MSTEIKT-EYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V +N D S TV DNGRGIP ++++ GI A EV+ T LHAGGKF YKVSGGL Sbjct: 59 CDTIDVAINEDNSITVIDNGRGIPVGINQKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS+WL++ I EG IY + G L + G TGT VTFLP Sbjct: 119 HGVGASVVNALSTWLEVTIFHEGKIYRQRYERGKTVYSLKIVGECEPEKTGTMVTFLPDP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F++ TL+HR RE++FL ++I DKR E +E+T Y+GGI+ FV YL++ Sbjct: 179 EIFEETIFDFGTLKHRFREIAFLTKGLKIVARDKREEEEKEVTFHYEGGIKEFVQYLNKS 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L + +G++D + +++AM+ ND Y EN F NNI +GGTH+ G R+ALT+ Sbjct: 239 NTALYDDILYFEGNKDGVMVEVAMQHNDAYTENTYGFVNNITTPEGGTHIVGFRNALTKT 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K+ K+ ++++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+ Sbjct: 299 FNEYARKNKLLKESEQNLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDGI 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P AKII++K L + RDAAR+AR+LTRRK LD SLPGKLADC + Sbjct: 359 VSNQLEIYLEQNPAVAKIIIEKSLLSQRARDAARKARELTRRKSALDGTSLPGKLADCVD 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP K E+++VEGDSAGGS K RSR QAILPLRGKILNVE+AR DK+ ++ EI +IT Sbjct: 419 KDPSKCEIYIVEGDSAGGSTKTARSRATQAILPLRGKILNVEKARLDKIYANAEIKAMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ KP Sbjct: 479 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PL+ I + K + Y E+ D L + G + + L Sbjct: 538 PLFKIEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWE 587 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 10/160 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R I++ Y+ + Sbjct: 482 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGYVYLAKPPLFK 541 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + N D + IG G ++QRYKGLGEM+A QLWETT++P++R L+RV Sbjct: 542 IEKNKKIHYAYTEQEQADILAEIGMDGCNIQRYKGLGEMDADQLWETTMDPESRILMRVV 601 Query: 767 ITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + S+ D F+ LMGD+VEPRREFI+EN+ + LDI Sbjct: 602 MDEDSTSELDLTFTTLMGDKVEPRREFIEENAKYAKNLDI 641 >gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM 16841] gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans DSM 16841] Length = 640 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 308/653 (47%), Positives = 413/653 (63%), Gaps = 18/653 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y D IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY I V Sbjct: 4 ENEYGGDQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSVDEALAGYCKNIEV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+N D S TV D+GRGIP D++ + G SA EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 63 TINEDNSITVEDDGRGIPVDINHKAGKSALEVVYTVLHAGGKFGGGGYKVSGGLHGVGAS 122 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185 VVNALS+ LK+ + REG +Y S+ G D P+ V G G + GT+VTF P IF Sbjct: 123 VVNALSTKLKVEVYREGKVYFQSYKIGKPDEPVKVIGECGEDKHGTKVTFWPDGSIFEET 182 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL+ RLRE +FL ++I L D R R Y GGI+ FV+YL++ K+ L Sbjct: 183 VFDYDTLKQRLRETAFLTKGLRIVLTDLRENPVRTYDFHYAGGIKEFVTYLNKSKEALYP 242 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +GS + + +++AM+ ND Y+E L F NNI +GGTHL+G R+ALT+ +Y Sbjct: 243 EVIYCEGSGNGVYVEVAMQHNDSYNELTLSFVNNIITPEGGTHLAGFRNALTKTFNAYAR 302 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K ++ ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V+S V++ L+ Sbjct: 303 ANKLLKDNEPALTGDDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSIVSEQLT 362 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK I +K L A R+AAR+ARDLTRRK L+ SLPGKLADCS++DPK Sbjct: 363 YFLEQNPTVAKTICEKSLLAQRAREAARKARDLTRRKTALEGMSLPGKLADCSDKDPKNC 422 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+ + EI +ITA GTGI Sbjct: 423 EIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 482 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ +PPLY I Sbjct: 483 HED-FDISKLRYNKIIIMTDADVDGAHISTLMLTFLYRFMPDLIKEGHVYLAQPPLYKIE 541 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 + K++ Y ++ L L G + L D Sbjct: 542 KNKNVWYAYSDDELNAILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMD----------- 590 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 +K +++ +I E D + K+ R FI E ++ + I Sbjct: 591 ---PEKRILKRVMIDDESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLDI 640 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 47/106 (44%), Positives = 63/106 (59%), Gaps = 6/106 (5%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRS 761 + + N + L + IGR G + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 536 PLYKIEKNKNVWYAYSDDELNAILTEIGRDGNNKIQRYKGLGEMDAEQLWETTMDPEKRI 595 Query: 762 LLRVKITDASQADDL---FSRLMGDEVEPRREFIQENSLPS-ALDI 803 L RV I D ++ F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 596 LKRVMIDD-ESTSEIDITFTTLMGDKVEPRREFIEENAKYVQNLDI 640 >gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar oswaldocruzi] Length = 631 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 287/585 (49%), Positives = 404/585 (69%), Gaps = 7/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VE DSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVE-DSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 476 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ + Sbjct: 477 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 536 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 580 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 86/467 (18%), Positives = 155/467 (33%), Gaps = 50/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFY--------------PNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 D D I + Y H + + + + N E + + ++ Sbjct: 408 DCSSKDPAISEIYIVEDSAGGSAKQGRDRHFQAIL--PLKGKIINVEKARLDKILSNDEV 465 Query: 639 ANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE 698 + I + ++ V + F + + I I Sbjct: 466 RTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY 525 Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLN 756 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++ Sbjct: 526 -IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMD 584 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 585 PEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 631 >gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202] gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202] Length = 655 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 280/617 (45%), Positives = 402/617 (65%), Gaps = 17/617 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIILRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEV 173 SGGLHGVG+SVVNALS W+ + + R+G+ + F G+ L G + GT + Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKK-GTTI 178 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGG 228 F P IFS +F Y L RLREL++LN V+I D+R+ +E Y+GG Sbjct: 179 CFKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGG 238 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGT 287 I+ +V Y++ K+ + I + R+N+ ++ A++W D Y +N+L F NNI DGGT Sbjct: 239 IKEYVEYMNAEKESIHPEIIYVDSQRENVYVEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H+ GL++ LTR + +K K ++++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++EVR +V+S + + L+ ++E +P +I++K + + +AARRAR+L RRK VL+ Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + + EI +LITALG GI + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKN 585 L+ GF+YI PPLY + RGK+ Y +E L++ + ++ + I+ F ++ K Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQRFKGLGEMMPKQ 598 Query: 586 DLRNFIDDALKIDKLIK 602 ++ ++ K ++ Sbjct: 599 LWDTTMNPQTRMMKRVE 615 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737 + +F +Y+R + L + G L +TI G ++Q Sbjct: 527 LLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQ 586 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ + Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETH-- 644 Query: 798 PSALD 802 S LD Sbjct: 645 SSNLD 649 >gi|116490131|ref|YP_809655.1| DNA gyrase subunit B [Oenococcus oeni PSU-1] gi|116090856|gb|ABJ56010.1| DNA gyrase subunit B [Oenococcus oeni PSU-1] Length = 652 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 400/639 (62%), Gaps = 9/639 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N+SY SIQIL+GL+AV+KRP MYIG T SGLHH+++E++DN IDE+L G+A +T+ Sbjct: 15 NNSYGGSSIQILEGLEAVRKRPGMYIGST-ASSGLHHLVWEIIDNGIDEALAGFAHHVTL 73 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D S T++D+GRG+P ++ + G A E + T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 74 TIEKDNSITITDDGRGVPVEIQPKTGRPAMEAVFTILHAGGKFDSKSYKVSGGLHGVGAS 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VVNALS + +R+ R+ IY M F G + + + GT V F P DIF Sbjct: 134 VVNALSKEMDVRVYRDNKIYYMDFERGHIKTEMKLLDEPMRLKRGTIVHFAPDPDIFRET 193 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y TL R+REL+FLN +++S DKR + + Y+GGI +V +L+++K+PL Sbjct: 194 IVFDYRTLASRIRELAFLNKGLRLSTTDKRVDPVKNESFMYEGGIAEYVKFLNKNKQPLF 253 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ ++G + I +++A+++ D E ++ FTNNI +GGTH +G + ALTR I Y Sbjct: 254 PEPVYVEGEENGIQVEVALQYTDAVAETLMSFTNNIHTHEGGTHETGFKMALTRIINDYA 313 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 +K K + G+D REG T+++SIK PDP+F QTK KL +++ + VV + Sbjct: 314 KKKGILKDSDDPLSGEDVREGITAIVSIKHPDPQFEGQTKTKLGNTDAQQVVNHQFSTIF 373 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + ++ E+P A+ I K L AS R AA++ARDLTR+K L+I++L GKLAD + RDP+ Sbjct: 374 NRFMMENPETARAIANKGLIASKARAAAKKARDLTRKKSGLEISALAGKLADNTSRDPEI 433 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG Sbjct: 434 SELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFTAMGTG 493 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG- 543 G++ FDI+K YHK+IIMTDADVDGAHIRTLLLT FFR M LI G++YI +PPLYG Sbjct: 494 FGEE-FDISKAHYHKVIIMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYIYIAQPPLYGV 552 Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 I Y+ +E L+ Y S + G + L + D + + Sbjct: 553 AIGNSDQRVYLDSDEELDQYTATLPASPKPRIQRYKGLGEMDAVQLWDTTMDPKH--RRL 610 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 P + + E +E A + + Sbjct: 611 LRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDNAQFVED 649 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLW+TT++P R LLRV + D F LMGD VEPRREFI++N Sbjct: 584 IQRYKGLGEMDAVQLWDTTMDPKHRRLLRVDPEYQPEVDTTFDMLMGDRVEPRREFIEDN 643 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 644 AQFVEDLDV 652 >gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6] gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6] Length = 621 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 281/581 (48%), Positives = 399/581 (68%), Gaps = 13/581 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A+ I++L ++AV+KRP MYIG G GLHH+++E++DN+IDE+L G+ ITVTL Sbjct: 2 EYTAEQIEVLGDIEAVRKRPGMYIGGI-GLRGLHHLLWEIVDNSIDEALAGHCKNITVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + DGS +V D+GRGIPT++H E G A E+++T+LHAGGKFN+K+YKV+GGLHGVG+SVV Sbjct: 61 HKDGSASVEDDGRGIPTEVH-ELGRPAVEIVLTKLHAGGKFNKKAYKVAGGLHGVGLSVV 119 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS WL++ +KR G IY + G+ PL V G +TGT++ F P +IF +F Sbjct: 120 NALSEWLEVWVKRNGKIYYQKYERGVPVTPLQVIGETK-ETGTKIRFKPDEEIFETTEFR 178 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +D + RL+EL++LN +++ LID+RS + + + GI+ FV+ L+++ KP++ I Sbjct: 179 WDIVAQRLKELAYLNKGIRLKLIDERSGKS--KEFYSEDGIKGFVAQLNKN-KPVIHDVI 235 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 ++ I +++A+++ D ENVL F NNI +GGTH G R+ LTR I + +K Sbjct: 236 HFSEEKNGIMVEVAIQFTDTEIENVLFFANNINTIEGGTHAVGFRAGLTRAINEFGKK-- 293 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K + + G D REG T+V+S+K+P+P+F QTK KL +SEV++VVES V + WL Sbjct: 294 -YVKKFKPLTGADIREGLTAVVSVKVPEPQFEGQTKTKLTNSEVKTVVESIVYSEVLKWL 352 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 EEHP EA I++K + A R+AAR+AR++ RRKG + I +LPGKLADCS ++P++ ELF Sbjct: 353 EEHPNEANRIIEKCILAMKAREAARKAREIVRRKGEISI-TLPGKLADCSSKNPEERELF 411 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEG+SAGGSAKQ R R QAILP+RGKI+NVE+A K L ++EI + A+G GIG+D Sbjct: 412 IVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMAKALRNEEIKAIAAAIGAGIGKD 471 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 FDI K RY ++IIMTDADVDGAHIRTLLLTFF+R M LI +G+LYI +PPLY + +GK Sbjct: 472 -FDITKARYRRVIIMTDADVDGAHIRTLLLTFFYRYMKPLIESGYLYIAQPPLYRVKKGK 530 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + YV + LED + + + G ++ L Sbjct: 531 KVYYVYSDRELED--LLERIGNAEVQRYKGLGEMNPEQLWE 569 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 3/184 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E ++ I K + + ++ V + Sbjct: 440 IINVEKAGMAKALRNEEIKAIAAAIGAGIGKDFDITKARYRRVIIMTDADVDGAHIRTLL 499 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I S + + + + L D + IG +QRYK Sbjct: 500 LTFFYRYMKPLIESGYLYIAQPPLYRVKKGKKVYYVYSDRELEDLLERIG--NAEVQRYK 557 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP R L++V + DA++A++LFS LMG++VE R+ FI E+S Sbjct: 558 GLGEMNPEQLWETTMNPHNRYLIQVTLEDAARAEELFSVLMGEDVEARKRFIMEHSKEVR 617 Query: 800 ALDI 803 LD+ Sbjct: 618 NLDV 621 >gi|325972866|ref|YP_004249057.1| DNA gyrase subunit beta [Spirochaeta sp. Buddy] gi|324028104|gb|ADY14863.1| DNA gyrase, B subunit [Spirochaeta sp. Buddy] Length = 677 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 286/610 (46%), Positives = 400/610 (65%), Gaps = 26/610 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M ++ + SY A SIQ+LKGL+AV+KRP MYIG T G GLHH++YEV+DN+IDE++ GY Sbjct: 21 MMES-ASHSYSAGSIQVLKGLEAVRKRPGMYIGST-GIEGLHHLVYEVVDNSIDEAMAGY 78 Query: 61 ADIITVTLNMDGS----CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 I V L++D CTV DNGRGIP +LH E S+ E+ +T+LHAGGKF++ SYKV Sbjct: 79 CSDIQVFLDLDSEGREICTVEDNGRGIPVELHPTEKKSSLEIALTQLHAGGKFDKNSYKV 138 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVS VNALS W+++ + R+G +Y + GI +V G + +GT V+F Sbjct: 139 SGGLHGVGVSCVNALSIWMEVTVYRDGGVYRQQYSCGIPQTEVVRIGDT-DRSGTVVSFA 197 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P I FNY+ L R RELSFLN V I++ D+R E +GGI FVSYL Sbjct: 198 PDYSIMEQNAFNYEVLVSRFRELSFLNKGVSITITDRRGDETHSQAFQSEGGISQFVSYL 257 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + K+ L+ PI I+G +D+I +++A+++ND Y E VL + NNI ++GGTHL+G R+ L Sbjct: 258 NEFKRVLVDPPISIEGEKDSIKVEIALQYNDKYDEKVLSYVNNINTREGGTHLTGFRTGL 317 Query: 297 TRQITSYVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +R I + ++K+ KK + + D EG T+V+S+K+P+P+F QTK KL +S V V Sbjct: 318 SRVINTQLQKNTKLLKKYEEKLEQSDISEGLTAVVSVKVPEPQFEGQTKMKLGNSAVTGV 377 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V S V + L + +E P + ++I++K+++A++ R AAR+AR+ R+K LPGKLA Sbjct: 378 VFSLVYEKLGNYFDEFPAQTEVILEKIINAALGRIAARKAREQIRKKSE--GGGLPGKLA 435 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCSE+DP K E+F+VEGDSAGGSAKQGR R+ QAIL L GK+LNVE+A+ K+L + ++ Sbjct: 436 DCSEKDPAKCEVFIVEGDSAGGSAKQGRDRKFQAILALWGKMLNVEKAQEYKVLGNDKLQ 495 Query: 476 TLITALGTG------IGQD-------SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 +I +G G +G+D +FD++K+RYHK+IIM DADVDG+HIRTLLLTFFF Sbjct: 496 PVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADADVDGSHIRTLLLTFFF 555 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL---SEEIELFCDSK 579 R M LI G++Y PPLY IT GK +QY DEE+ L ++ S+ Sbjct: 556 RYMRPLIEAGYVYFAMPPLYKITIGKKVQYAYDEEARVRILQENNIADPSKVAIQRYKGL 615 Query: 580 GVISKNDLRN 589 G ++ L Sbjct: 616 GEMNPEQLWE 625 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 13/201 (6%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK---SEKSWHGSINNSDILVKRIAR 669 +E+A V + Q + ++ + L N ++ + ++ S ++ Sbjct: 480 VEKAQEYKVLGNDKLQPVIATIGAGLTRYNNMGKDEDFDHDVNFDVSKVRYHKVIIMADA 539 Query: 670 GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI 729 V + F F I + + + L I G K++ I Sbjct: 540 DVDGSHIRTLLLTFFFRYMRPLIEAGYVY-FAMPPLYKITIGKKVQYAYDEEARVRILQE 598 Query: 730 ------GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + +++QRYKGLGEMN QLWETT+NP+TR + ++K+ DA +AD +FS LMG+ Sbjct: 599 NNIADPSK--VAIQRYKGLGEMNPEQLWETTMNPETRLISQIKLHDAEEADRVFSMLMGE 656 Query: 784 EVEPRREFIQENSLPS-ALDI 803 EVEPRR FI N++ LD+ Sbjct: 657 EVEPRRAFIDANAVYVSNLDV 677 >gi|167748047|ref|ZP_02420174.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662] gi|317472423|ref|ZP_07931748.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] gi|167652527|gb|EDR96656.1| hypothetical protein ANACAC_02785 [Anaerostipes caccae DSM 14662] gi|316900143|gb|EFV22132.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA] Length = 640 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 307/585 (52%), Positives = 398/585 (68%), Gaps = 4/585 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DESL GY D I Sbjct: 5 KKGEYGADQIQILEGLEAVRKRPGMYIGSTSA-KGLHHLVYEIVDNAVDESLAGYCDTIY 63 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTLN D S TV DNGRGIP ++K++G+S+ EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 64 VTLNKDNSVTVRDNGRGIPVGMNKKKGVSSVEVVFTILHAGGKFGGGGYKVSGGLHGVGS 123 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+WL++ + +G IY + G + PL V G GTEV+FLP IF Sbjct: 124 SVVNALSNWLEVNVHTDGKIYNQRYEKGKVCYPLKVVGETE-LNGTEVSFLPDDTIFEET 182 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F Y L+ RLRE +FL +++I L D R EP E Y+GGI+ FV+YL+R K+ L Sbjct: 183 IFEYKVLRQRLRETAFLTKNLRIILRDDRQEEPVEEVFHYEGGIKEFVTYLNRGKEALYD 242 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D + +++AM+ ND Y+EN L F NNI +GGTHLSG ++ALT Y Sbjct: 243 QVIYCEGEKDGVYVEVAMQHNDSYNENSLSFVNNIITPEGGTHLSGFKNALTTTFNDYAR 302 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K+++ ++ G+D REG TSV+SIK+ +P+F QTK+KL +SE R V S VN+ L+ Sbjct: 303 KNKLLKENESNLSGEDIREGLTSVISIKLGEPQFEGQTKQKLGNSEARGAVNSIVNEQLT 362 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AKII +K + A RDAAR+ARDLTRRK LD SLPGKLADCS+++P+ Sbjct: 363 YFLEQNPAVAKIICEKAVLAQRARDAARKARDLTRRKTALDGFSLPGKLADCSDKNPENC 422 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE++R DK+L ++EI +ITA GTGI Sbjct: 423 EIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILMNKEIQAMITAFGTGI 482 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D FDI KLRYHKIIIMTDADVDGAHI TLLLTFF+R MP LI G++Y+ +PPLY + Sbjct: 483 -HDDFDIEKLRYHKIIIMTDADVDGAHIATLLLTFFYRFMPDLIKEGYVYMAQPPLYRVE 541 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 R K Y ++ L + + G + L + Sbjct: 542 RNKKFWYAYSDQELNNIVNEIGRDNNNKIQRYKGLGEMDAEQLWD 586 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 14/192 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + + ++ V + Sbjct: 454 ILNVEKSRLDKILMNKEIQAMITAFGTGIHDDFDIEKLRYHKIIIMTDADVDGAHIATLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENY----LTILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS 735 F + R + I+E Y L + K L + + IGR + Sbjct: 514 LTFFY-----RFMPDLIKEGYVYMAQPPLYRVERNKKFWYAYSDQELNNIVNEIGRDNNN 568 Query: 736 -MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLMGDEVEPRREFI 792 +QRYKGLGEM+A QLW+TT++PD R LLRV I + AS+ D F+ LMGD+VEPRREFI Sbjct: 569 KIQRYKGLGEMDAEQLWDTTMDPDKRVLLRVTIDEDSASEIDLTFTTLMGDQVEPRREFI 628 Query: 793 QENSLPS-ALDI 803 + N+ LD+ Sbjct: 629 EANAKYVQNLDV 640 >gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215] gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215] Length = 655 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 280/617 (45%), Positives = 401/617 (64%), Gaps = 17/617 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEDKRSNKISNDYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIVLRADGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEV 173 SGGLHGVG+SVVNALS W+ + + R+G+ + F G+ L G + GT + Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGLSKGELQTKKQIGKSSKK-GTTI 178 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGG 228 F P IFS +F Y L RLREL++LN V+I D+R+ +E Y+GG Sbjct: 179 CFKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNQLSDGSFKEEIYLYQGG 238 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGT 287 I+ +V Y++ K + I + R+N+ ++ A++W D Y +N+L F NNI DGGT Sbjct: 239 IKEYVEYMNAEKDSIHPEIIYVDSQRENVYVEAALQWCSDVYSDNILGFANNIRTIDGGT 298 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H+ GL++ LTR + +K K ++++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 299 HIEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKL 358 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++EVR +V+S + + L+ ++E +P +I++K + + +AARRAR+L RRK VL+ Sbjct: 359 GNTEVRGIVDSLIGEALTKYMEFNPGILDLILEKAIQSFNAAEAARRARELVRRKSVLES 418 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ++LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K Sbjct: 419 STLPGKLADCSSRDPSESEIYIVEGDSAGGSAKQGRDRNFQAILPLRGKILNIEKTDDTK 478 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + + EI +LITALG GI + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R Sbjct: 479 IYKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRE 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKN 585 L+ GF+YI PPLY + RGK+ Y +E L++ + ++ + I+ F ++ K Sbjct: 539 LVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQRFKGLGEMMPKQ 598 Query: 586 DLRNFIDDALKIDKLIK 602 ++ ++ K ++ Sbjct: 599 LWDTTMNPQTRMMKRVE 615 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 5/125 (4%) Query: 681 SIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737 + +F +Y+R + L + G L +TI G ++Q Sbjct: 527 LLLTFFYRYQRELVEKGFIYIACPPLYKVERGKNHNYCYNENQLKNTIEGFGENANYNIQ 586 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ + Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETH-- 644 Query: 798 PSALD 802 S LD Sbjct: 645 SSNLD 649 >gi|238915981|ref|YP_002929498.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] gi|238871341|gb|ACR71051.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750] Length = 644 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 296/592 (50%), Positives = 400/592 (67%), Gaps = 5/592 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D +Y D IQ+L+GL+AV+KRP MYIG T GLHH++YE++DNAIDE+L G+ Sbjct: 1 MADQNAEKNYGGDQIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVYEIVDNAIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V +N D S TV DNGRG+P D++ + G A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CTHIEVMINKDNSITVIDNGRGVPVDINHKTGRPAIEVVYTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179 HGVG SVVNALS WL++++KR G+IY+ + G + L + G DTGT+VTFLP S Sbjct: 120 HGVGASVVNALSEWLEVQVKRNGHIYQQRYERGKICYDLKIVGDCDIEDTGTQVTFLPDS 179 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF F +D L HRLRE++FL ++I+L D R ++ Y+GGI+ FV YL++ Sbjct: 180 EIFQETTVFEFDILMHRLREMAFLTKGIKITLTDLREGLEQQKVFHYEGGIKEFVQYLNK 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+PL I +G +DN+ +++A + NDGY+E V F NNI +GGTHL+G R++LT+ Sbjct: 240 SKEPLYSQIIYCEGVKDNVQVEVAFQHNDGYNEVVDSFVNNIKTPEGGTHLTGFRNSLTK 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y K+ K + + GDD REG T+++S+K+ DP+F QTK+KL ++ R V+S Sbjct: 300 TFNDYARKNKILKDSDQGLSGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTVARGAVDS 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L+ +LE++P AK I +K L A R+AAR+ARDLTRRK L+ SLPGKLADCS Sbjct: 360 IVSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALESTSLPGKLADCS 419 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++DPK E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++L + EI +I Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRILGNAEIKAMI 479 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ + Sbjct: 480 TAFGTGIHED-FDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIREGHVYLAQ 538 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589 PPLY + + K + Y +++ L + + + G + L Sbjct: 539 PPLYKVEKNKKVWYAYNDDELNAIMTEIGRDQNNKVQRYKGLGEMDAEQLWE 590 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEEN----YLTILSL 707 G + DI R + + ++G+ I + + R + I E L Sbjct: 484 TGIHEDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPDLIREGHVYLAQPPLYK 543 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L+ I + + + +QRYKGLGEM+A QLWETT++P R LLRV Sbjct: 544 VEKNKKVWYAYNDDELNAIMTEIGRDQNNKVQRYKGLGEMDAEQLWETTMDPHKRVLLRV 603 Query: 766 KI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D S+ D FS LMGD+VEPRR+FI+ N+ LDI Sbjct: 604 NMNEDDDSELDVTFSTLMGDKVEPRRDFIEANAKFVKNLDI 644 >gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1] gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1] Length = 638 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 302/646 (46%), Positives = 425/646 (65%), Gaps = 20/646 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Q SYD + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 2 EQEQRQSYDENQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGYCS 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D S TV DNGRGIP +H++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 61 EIKVSIEKDNSITVQDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G I+ F G+ L VTG + + TGT + F P +IF Sbjct: 121 VGASVVNALSTELEVFVHRDGKIHYQKFEKGVPSGDLKVTGES-DVTGTIIHFKPDPEIF 179 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + + YD L +RLREL+FLN ++I + D R + + Y+GGI+++V +L+R K+ Sbjct: 180 TETTEYEYDILANRLRELAFLNRGIKIIIEDNRVEDKKNE-YHYEGGIKSYVEHLNRSKE 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + PI I+G +DNIS+++A+++NDG+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 239 VVHEEPIYIEGEKDNISVEIALQYNDGFASNLYSFANNIHTYEGGTHESGFKTALTRVIN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K+ ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ ++ + Sbjct: 299 DYARKNHLYKESDANLSGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDALFS 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + ++L E+P+ A+ +V K L A+ R AA++AR+LTRRK L+++SLPGKLADCS RD Sbjct: 359 EHFESFLLENPVVARKVVDKGLMAARARLAAKKARELTRRKSALEVSSLPGKLADCSSRD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK SE+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+AR DK+LS+ E+ +ITAL Sbjct: 419 PKISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKIINVEKARLDKILSNNEVRAMITAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG+D FDI+K RY K++IMTDADVDGAHIRTLLLTFF+R M +I G++YI +PPL Sbjct: 479 GTGIGED-FDISKARYQKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEAGYIYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y I +GK ++YV ++ LE+ L + + Sbjct: 538 YQIKQGKKIEYVYSDKQLEEALAQMP-----------AQPKPGIQRYKGLGEMNATQLWE 586 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 P + + Q + + E+ + K+ R NFI + Sbjct: 587 TTMDPEY--RTLLQVSLEDAIEADETFEML--MGDKVEPRRNFIED 628 Score = 173 bits (439), Expect = 9e-41, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 6/200 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S +V Sbjct: 442 RHFQAIL--PLRGKIINVEKARLDKILSNNEVRAMITALGTGIGEDFDISKARYQKVVIM 499 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDT 725 V + F + + I + I L I G KI+ + L + Sbjct: 500 TDADVDGAHIRTLLLTFFYRYMRQIIEAGYIY-IAQPPLYQIKQGKKIEYVYSDKQLEEA 558 Query: 726 IFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + + + +QRYKGLGEMNA+QLWETT++P+ R+LL+V + DA +AD+ F LMGD+ Sbjct: 559 LAQMPAQPKPGIQRYKGLGEMNATQLWETTMDPEYRTLLQVSLEDAIEADETFEMLMGDK 618 Query: 785 VEPRREFIQENSLPS-ALDI 803 VEPRR FI++N+ LD+ Sbjct: 619 VEPRRNFIEDNAAYVKNLDV 638 >gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101] gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101] Length = 638 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +YDA IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRG+P +H + G EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 IKVYIHKDNSITVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ + R+G +++ S+ G + L G A +GT+V F P +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++++ L RLREL+FLN + I+LID+R E +E Y+GGI++FVSYL+R+K+ L Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D I+++++++++DG++EN+ F NNI +GGTHL+G ++ALTR + Y Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +++ GDD REG T+V+S+K+ +P+F QTK KL +SEVRS V+S +G Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P KII++K L AS R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S I +++TA+G Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I++GK +Y + + ++ + + KG+ ++ + + Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591 Query: 604 FYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 592 ESRILLRADIEDAMVADEI 610 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736 + +F +Y R + L I G + + + D I G+ +++ Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P++R LLR I DA AD++F+ LMGD+VEPRREFIQ+N+ Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630 Query: 797 LPS-ALDI 803 LDI Sbjct: 631 KNVSNLDI 638 >gi|110799437|ref|YP_694481.1| DNA gyrase subunit B [Clostridium perfringens ATCC 13124] gi|168207731|ref|ZP_02633736.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987] gi|168215272|ref|ZP_02640897.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969] gi|170764021|ref|ZP_02637634.2| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626] gi|182420561|ref|ZP_02643926.2| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239] gi|182627057|ref|ZP_02954782.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721] gi|110674084|gb|ABG83071.1| DNA gyrase, B subunit [Clostridium perfringens ATCC 13124] gi|170660917|gb|EDT13600.1| DNA gyrase, B subunit [Clostridium perfringens E str. JGS1987] gi|170710064|gb|EDT22246.1| DNA gyrase, B subunit [Clostridium perfringens B str. ATCC 3626] gi|170713332|gb|EDT25514.1| DNA gyrase, B subunit [Clostridium perfringens CPE str. F4969] gi|177907583|gb|EDT70222.1| DNA gyrase, B subunit [Clostridium perfringens D str. JGS1721] gi|182379692|gb|EDT77171.1| DNA gyrase, B subunit [Clostridium perfringens NCTC 8239] Length = 638 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +YDA IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRG+P +H + G EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ + R+G +++ S+ G + L G A +GT+V F P +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++++ L RLREL+FLN + I+LID+R E +E Y+GGI++FVSYL+R+K+ L Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D I+++++++++DG++EN+ F NNI +GGTHL+G ++ALTR + Y Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +++ GDD REG T+V+S+K+ +P+F QTK KL +SEVRS V+S +G Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P KII++K L AS R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S I +++TA+G Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I++GK +Y + + ++ + + KG+ ++ + + Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591 Query: 604 FYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 592 ESRILLRADIEDAMVADEI 610 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736 + +F +Y R + L I G + + + D I G+ +++ Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P++R LLR I DA AD++F+ LMGD+VEPRREFIQ+N+ Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630 Query: 797 LPS-ALDI 803 LDI Sbjct: 631 KNVSNLDI 638 >gi|291521103|emb|CBK79396.1| DNA gyrase subunit B [Coprococcus catus GD/7] Length = 636 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 307/635 (48%), Positives = 399/635 (62%), Gaps = 4/635 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY D I V Sbjct: 2 SEGYGASQIQILEGLEAVRKRPGMYIGSTSA-KGLHHLVYEIVDNSVDEALAGYCDHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+N D S TV DNGRGIP + + A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 TINKDNSITVVDNGRGIPVGIQAKAHKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ + +G Y + G + L G GT V FLP +IF Sbjct: 121 VVNALSEWLEVNVYVDGYEYYQRYERGKVMCELQKIGPTE-KRGTTVHFLPDKEIFEETV 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y L+ RLRE++FL ++ISL D R EP + Y+GGI +V+YL++ PL Sbjct: 180 FDYKVLKQRLREIAFLTKGLRISLTDVREEEPILSSFHYEGGIREYVAYLNKANTPLYDE 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G +D + +++A++ NDGY+ENV F NNI +GGTHL G+RSALT+ Y K Sbjct: 240 IIYCEGEKDGVLVEVALQHNDGYNENVYSFVNNITTPEGGTHLVGMRSALTKTFNDYARK 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K +++S+ G+D REG T+++SIK+ +P+F QTK+KL +SE R VES V+D L Sbjct: 300 NKLLKDNEQSLTGEDIREGLTAIVSIKIGEPQFEGQTKQKLGNSEARGAVESIVSDKLGV 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P K+IV+K + A RDAAR+ARDLTRRKG LD SLPGKLADCS++DP K E Sbjct: 360 FLEQNPAIGKLIVEKSVMAQRARDAARKARDLTRRKGALDSMSLPGKLADCSDKDPAKCE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+L + EI +ITA GTGI Sbjct: 420 IYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKILVNNEIKAMITAFGTGIH 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ KPPLY I R Sbjct: 480 ED-FDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAKPPLYKIER 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 K Y ++ L L + G + L D + + Sbjct: 539 NKKEWYAYSDDELNAILTEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRILMRVSMD 598 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + E + E +E A + N Sbjct: 599 DAEKVSIDETFSVLMGDKVEPRREFIEKNAKYVRN 633 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R + I E Y+ + Sbjct: 476 TGIHEDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAKPPLYK 535 Query: 707 LICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + N + L + IGR + +QRYKGLGEM+A QLWETT++P+ R L+RV Sbjct: 536 IERNKKEWYAYSDDELNAILTEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRILMRV 595 Query: 766 KITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DA + D+ FS LMGD+VEPRREFI++N+ LDI Sbjct: 596 SMDDAEKVSIDETFSVLMGDKVEPRREFIEKNAKYVRNLDI 636 >gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521] gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521] gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 637 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 304/643 (47%), Positives = 424/643 (65%), Gaps = 11/643 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 2 EQNNRKYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKK 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V +N D S TV D+GRG+P +H + G S EVIMT LHAGGKF YKVSGGLHGV Sbjct: 61 IEVNINKDNSITVIDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ +KREG I++ + G + + G + ++GT+V F P ++IF Sbjct: 121 GASVVNALSEECRVTVKREGAIWQQEYSKGKVLTDVEKIGESS-ESGTQVYFKPDAEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+++ L RLREL+FLN + I L+D R +E Y+GGI++FVSYL+R+K L Sbjct: 180 EVIFDFEILAQRLRELAFLNKGIYIKLVDLREENEKEEVFHYEGGIKSFVSYLNRNKVAL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI I+G +DN+S+++A+++NDGY EN+ F NNI +GGTHL G ++ALTR Y Sbjct: 240 HEEPIYIEGIKDNVSVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRAFNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K++ ++ GDD REG T+V+S+K+ +P+F QTK KL +SEVR +V+S V + Sbjct: 300 AKKFGHIKENDKNFTGDDIREGLTAVVSVKIEEPQFEGQTKTKLGNSEVRGIVDSIVGEC 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P K+IV K L A+ RDAAR+AR+LT RK VL+ ++LPGKLADCS +DPK Sbjct: 360 ISTFLEENPSVGKMIVDKALMAARARDAARKARELT-RKSVLERSTLPGKLADCSSKDPK 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR+R+ QAILPLRGKILNVE+ R D++L++ I +++TA G Sbjct: 419 ECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMVTAFGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FDI K+RY +IIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PPLY Sbjct: 479 GIGND-FDIEKIRYDRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIDEGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 I++GK Y + LE LI+ + G ++ + L + +D Sbjct: 538 ISKGKKEHYAYSDAELEQVLIDFGGKDNSTDIQRYKGLGEMNASQLWDT-----TMDPEQ 592 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + ++ I + E + + N +N Sbjct: 593 RILLRVNVEDAMQADEIFTILMGEKVEPRKEFIQQNAKNVVNL 635 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + A + + + + D ++ V + Sbjct: 452 ILNVEKQRLDRILNADTIRSMVTAFGAGIGNDFDIEKIRYDRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQR 738 F + I + + + + L + G K S +QR Sbjct: 512 LTFFYRYMRPLIDEGHVYIAQPPLYKISKGKKEHYAYSDAELEQVLIDFGGKDNSTDIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNASQLW+TT++P+ R LLRV + DA QAD++F+ LMG++VEPR+EFIQ+N+ Sbjct: 572 YKGLGEMNASQLWDTTMDPEQRILLRVNVEDAMQADEIFTILMGEKVEPRKEFIQQNAKN 631 Query: 799 -SALDI 803 LDI Sbjct: 632 VVNLDI 637 >gi|28376979|ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1] gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1] gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269810|emb|CAD62707.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1] gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1] gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 648 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 294/645 (45%), Positives = 421/645 (65%), Gaps = 16/645 (2%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++N + + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MTENEKETKLEQAREYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+A++I VT+ D S TV+DNGRGIP D+ ++ G A E + T LHAGGKF Y Sbjct: 60 EALAGFANVIHVTVEKDNSITVTDNGRGIPVDIQEKTGKPALETVYTILHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEV 173 KVSGGLHGVG SVVNALSS L +++ R G++Y M F G + P+ + G A +D GT V Sbjct: 120 KVSGGLHGVGASVVNALSSTLDVKVTRNGHVYYMDFERGKVKTPMKIIGDAPDDAHGTAV 179 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 F+P DIF ++ + L R+REL+FLN ++I++ D R EP E Y+GGI + Sbjct: 180 HFVPDPDIFRETTTYDINILTTRIRELAFLNKGLRITIRDNRPDEPTEDDFLYEGGIRHY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YLD++K L PI ++G ++ I++++A+++ D YH N++ FTNNI +GGTH G Sbjct: 240 VEYLDKNKTVLFPEPIYVEGEQNGITVEVALQYTDDYHSNLMTFTNNIHTYEGGTHEEGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALTR I Y K+ K+ ++ G+D REG T+V+S+K PDP+F QTK KL +S+ Sbjct: 300 KRALTRVINDYARKNNLLKESDANLSGEDVREGMTAVVSVKHPDPQFEGQTKTKLGNSDA 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R+ V+ ++ S +L E+P A+ +V K L AS R AA+RAR++TR+K L+I++LPG Sbjct: 360 RAAVDRLFSEHFSKYLMENPSVARKVVDKGLLASKARVAAKRAREVTRKKSGLEISNLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLAD S +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++ Sbjct: 420 KLADNSSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASIDKILANE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +L TA+GTG G D FD++K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ G Sbjct: 480 EIRSLFTAMGTGFGGD-FDLSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFI 591 F+YI +PPLY + +GK ++Y+ +E L + + + S + + G + L Sbjct: 539 FVYIAQPPLYQVRQGKFVKYIDSDEELSEVMGQLAPSPKPVVQRYKGLGEMDAEQLWET- 597 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + D+ + + + + + + Sbjct: 598 ----TMDPDKRRLLRVRDEDAADADGVFSMLMGDQVKPRREFIED 638 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++PD R LLRV+ DA+ AD +FS LMGD+V+PRREFI++N Sbjct: 580 VQRYKGLGEMDAEQLWETTMDPDKRRLLRVRDEDAADADGVFSMLMGDQVKPRREFIEDN 639 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 640 AKFVQDLDV 648 >gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus duerdenii ATCC BAA-1640] Length = 637 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 296/649 (45%), Positives = 411/649 (63%), Gaps = 15/649 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N Y A IQ+L GL+ V+ RP MYIG T G GLHH+IYEV+DN+IDE+L+G Sbjct: 1 MTNNRH---YGAGDIQVLTGLEPVRLRPGMYIGST-GPKGLHHLIYEVVDNSIDEALQGM 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+ DGS +VSDNG GIP + H + G S E ++T LHAGGKF + +YKVSGGL Sbjct: 57 CDTIEVTILKDGSVSVSDNGSGIPVEKHPQTGKSTVETVLTILHAGGKFKEGAYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVGVSVVNALS+ L +KR +Y F G+ L V + TGT + F P Sbjct: 117 HGVGVSVVNALSTKLVAEVKRNKKLYRQEFSRGVPQTELEVVEDLKEDVTGTTIIFHPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +F ++ L+ R RE++FLN +V+I D+R R+ Y+GGI++FV Y++R Sbjct: 177 EIFETVEFEFEVLEKRFREMAFLNKNVKIIFTDERVD--RQEIFHYEGGIKSFVEYINRK 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + I + +N +++A+++ D Y ENVL F NNI ++GGTHLSG R+++TR Sbjct: 235 KTKIHKDVIYFEELAENTQVEVAIQYTDSYSENVLTFANNINTEEGGTHLSGFRASVTRT 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K K+ + ++ GDD REG T+++S+K+P+P+F QTK KL +SE R +V+ Sbjct: 295 INDYGRKYNIIKEKEENLSGDDVREGMTAIISVKIPNPQFEGQTKSKLGNSETRGIVDGV 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++GL+A+LEE+P AKII+ K L A R+AAR+ARDLTR++ +LD +LPGKL DC E Sbjct: 355 VSNGLTAYLEENPKVAKIILDKALQARRAREAARKARDLTRKRSILDSMTLPGKLKDCHE 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 D +E+FLVEGDSAGG+AK GR QA+LPLRGKI+NVE+AR DK+L+S EI +IT Sbjct: 415 SDISVNEIFLVEGDSAGGTAKDGRDSNIQAVLPLRGKIMNVEKARLDKILNSDEIKAMIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI ++ FDIN LRY KIIIMTDADVDGAHI TLLLTFFFR M LI +G +Y+ KP Sbjct: 475 AFGTGIDKE-FDINNLRYGKIIIMTDADVDGAHIMTLLLTFFFRHMKPLIEHGHIYVAKP 533 Query: 540 PLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFC-DSKGVISKNDLRNFIDDALKI 597 PLYG+ RG+ + +Y D+E LE L + ++ G ++ L + Sbjct: 534 PLYGVKRGEKVIRYCYDDEELESALNELGRDKNYKIARYKGLGEMNAEQLWET-----TM 588 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 + + + + ++ + + + N A Sbjct: 589 NPDSRILLRVNIEDVLDADDVFSTLMGVDVEPRREFIEENAKYAENIDA 637 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 3/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + ++ + +K + + ++ V ++ Sbjct: 452 IMNVEKARLDKILNSDEIKAMITAFGTGIDKEFDINNLRYGKIIIMTDADVDGAHIMTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGR-KGISMQR 738 F F I I + + I+ L + +GR K + R Sbjct: 512 LTFFFRHMKPLIEHGHIYVAKPPLYGVKRGEKVIRYCYDDEELESALNELGRDKNYKIAR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLWETT+NPD+R LLRV I D ADD+FS LMG +VEPRREFI+EN+ Sbjct: 572 YKGLGEMNAEQLWETTMNPDSRILLRVNIEDVLDADDVFSTLMGVDVEPRREFIEENAKY 631 Query: 799 S-ALD 802 + +D Sbjct: 632 AENID 636 >gi|169343479|ref|ZP_02864479.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495] gi|169298431|gb|EDS80520.1| DNA gyrase, B subunit [Clostridium perfringens C str. JGS1495] Length = 637 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 294/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +YDA IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 2 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRG+P +H + G EVIMT LHAGGKF YKVSGGLHGV Sbjct: 61 IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ + R+G +++ S+ G + L G A +GT+V F P +IF Sbjct: 121 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLEKIGEAE-GSGTKVHFKPDHEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++++ L RLREL+FLN + I+LID+R E +E Y+GGI++FVSYL+R+K+ L Sbjct: 180 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D I+++++++++DG++EN+ F NNI +GGTHL+G ++ALTR + Y Sbjct: 240 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +++ GDD REG T+V+S+K+ +P+F QTK KL +SEVRS V+S +G Sbjct: 300 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRSAVDSISGEG 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P KII++K L AS R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK Sbjct: 360 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S I +++TA+G Sbjct: 419 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 479 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I++GK +Y + + ++ + + KG+ ++ + + Sbjct: 538 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 590 Query: 604 FYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 591 ESRILLRADIEDAMVADEI 609 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736 + +F +Y R + L I G + + + D I G+ +++ Sbjct: 510 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 569 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P++R LLR I DA AD++F+ LMGD+VEPRREFIQ+N+ Sbjct: 570 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 629 Query: 797 LPS-ALDI 803 LDI Sbjct: 630 KNVSNLDI 637 >gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4] Length = 636 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 293/585 (50%), Positives = 400/585 (68%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y+AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 SAEYNADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCDTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV D+GRGIP D+ K+ G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 QINSDNSITVVDDGRGIPVDIQKKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ + G +Y+ + G PL + G + GT+VTFLP IF Sbjct: 121 VVNALSEWLEVEVYHGGKVYKQRYERGKTMYPLKIVGDCPSDKHGTKVTFLPDKTIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++YDTL+ RLRE +FL +++I L D R + ++ Y+GGI+ FV+YL+R PL Sbjct: 181 VYDYDTLKIRLRETAFLTKNLKIILRDDREDKKEKV-FHYEGGIKEFVTYLNRSNVPLYD 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + I +G +DN+ +++AM+ ND Y EN+ F NNI +GGTHL+G R+ALT+ Y Sbjct: 240 NVIYCEGKKDNVLVEVAMQHNDSYTENIYSFVNNINTPEGGTHLTGFRNALTKTFNDYGR 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ ++ G+D REG T+++S+K+ +P+F QTK+KL +SE R V+S V++ L+ Sbjct: 300 KNKLLKDNEPALTGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDSVVSEQLT 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK I++K + A R AAR+ARDLTRRK VLD SLPGKLADCS + P++ Sbjct: 360 YFLEQNPSVAKTIIEKSVLAQRARAAARKARDLTRRKTVLDGLSLPGKLADCSSKHPEEC 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R++ QAILPLRGKILNVE+AR D++ + EI ++ITA GTGI Sbjct: 420 EIYIVEGDSAGGSAKDARNKSTQAILPLRGKILNVEKARLDRIYGNAEIKSMITAFGTGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY I Sbjct: 480 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIE 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y +E L + L + G + L Sbjct: 539 KNKRVWYAYSDEELNNILKEIGRDQNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 81/160 (50%), Gaps = 10/160 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 477 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 536 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I ++ L+ I + + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 537 IEKNKRVWYAYSDEELNNILKEIGRDQNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRV 596 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 + + + D F+ LMGD+VEPRREFI++N+ LDI Sbjct: 597 TMNEEMTSEIDLTFTTLMGDQVEPRREFIEQNAKYGTLDI 636 >gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319] gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319] Length = 638 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 297/589 (50%), Positives = 417/589 (70%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + +Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 2 EQKEVQAYEADQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S TV DNGRGIP + ++ G A EVI+T LHAGGKF YKVSGGLHG Sbjct: 61 EINVIIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G ++ + G+ L V G + TGT + F P +IF Sbjct: 121 VGASVVNALSTSLEVYVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFHPDGEIF 179 Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + ++++DTL +RLREL+FLN ++I++ DKR + R Y+GGI+++V +L+R K+ Sbjct: 180 TETLEYDFDTLANRLRELAFLNRGIKITIEDKREEDKRRE-YHYEGGIKSYVEHLNRAKE 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + PI I+G+RDNIS+++A+++ND Y N+ F NNI +GGTH +G ++ALTR I Sbjct: 239 VIHEEPIYIEGNRDNISVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVIN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ +S Sbjct: 299 DYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L +L E+P+ AK +++K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +D Sbjct: 359 EHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGRSR QAILPLRGKI+NVE+AR DK+LS+ EI T+ITAL Sbjct: 419 PSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 479 GTGIG-DDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y +++GK ++Y ++ LE+ L + + G ++ L Sbjct: 538 YKVSQGKKVEYAYNDRQLEEVLASFPEGAKPNLQRYKGLGEMNPEQLWE 586 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 31/330 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557 +DA++ G +R + + P G + + Y+ + Sbjct: 310 SDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENP 369 Query: 558 SLEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 + +I + L K + ++L + D D I + Y Sbjct: 370 IVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEG 429 Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663 + A + ++ + + + RL+ I +E G ++ DI Sbjct: 430 DSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGIGDDFDIS 489 Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKIT 717 R + V ++G+ I + F +Y R I + L + G K++ Sbjct: 490 KARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYA 549 Query: 718 GPCSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + + G K ++QRYKGLGEMN QLWETT++P+ R+LL+V + DA +AD Sbjct: 550 YNDRQLEEVLASFPEGAK-PNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEAD 608 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + F LMGD+VEPRR FI+EN+ LDI Sbjct: 609 ETFEILMGDKVEPRRNFIEENAQYVKNLDI 638 >gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801] gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802] gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801] gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802] Length = 641 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 296/643 (46%), Positives = 409/643 (63%), Gaps = 10/643 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S Y A IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 1 MTTSDYGAQQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + +N DGS TV+D+GRGIPTD+H G SA E +MT LHAGGKF YKVSGGLHGVG Sbjct: 60 EIDINSDGSVTVTDDGRGIPTDIHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 +SVVNALS W+ + + REGNI+ + G L + TGT ++FLP +IFS Sbjct: 120 ISVVNALSEWVNVTVWREGNIHTQRYERGNPVTSLAANPDPDHSTGTSISFLPDIEIFSG 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+Y+TL RLREL++LN+ V+I+ D R E + T Y+GGI+ +V+Y+ R K L Sbjct: 180 GIEFDYNTLSGRLRELAYLNAGVKITFTDNRPAEIHQETYCYEGGIKEYVAYMCRDKDAL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 Q I + G ++ + I++A++W D Y +N+L F NNI DGGTHL GL++ LTR I + Sbjct: 240 HQDIIYVSGEKNGVQIEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTINN 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 K K+++ ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + Sbjct: 300 VARKRNKIKENEANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LE +P A I++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP Sbjct: 360 VLNEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++SE+FLVEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LITALG Sbjct: 420 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI + FD ++LRYH+++IMTDADVDGAHIRTLLLTFF+R L+ G++YI PPLY Sbjct: 480 LGIKGEEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLY 539 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + RG++ Y +E L+++L + + G + L ++ Sbjct: 540 KVERGRNHVYCYNERELQEHLNSLPANANYTIQRFKGLGEMMPTQLWET-----TMNPET 594 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + E I V + +LN Sbjct: 595 RTMKRVEIEDAAEADRIFTVLMGDRV-APRREFIETYGPKLNL 636 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + + S +V V + F + + + + + + + Sbjct: 485 EEFDPSQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRELVDQGYVYIACPPLYKVERG 544 Query: 711 GDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + + L + + S+ ++QR+KGLGEM +QLWETT+NP+TR++ RV+I D Sbjct: 545 RNHVYCYNERELQEHLNSLPANANYTIQRFKGLGEMMPTQLWETTMNPETRTMKRVEIED 604 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 A++AD +F+ LMGD V PRREFI+ LDI Sbjct: 605 AAEADRIFTVLMGDRVAPRREFIETYGPKLNLTDLDI 641 >gi|168335262|ref|ZP_02693363.1| DNA gyrase subunit B [Epulopiscium sp. 'N.t. morphotype B'] Length = 635 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 312/647 (48%), Positives = 425/647 (65%), Gaps = 15/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+NI YD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ Sbjct: 1 MSNNI----YDESQIQILEGLEAVRKRPDMYIGSTSA-KGLHHLVYEIVDNAVDEALAGF 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D +TVT++ D S +V DNGRGIP +HK++GISAAEV+ T LHAGGKF YKVSGGL Sbjct: 56 CDKVTVTIHKDNSISVLDNGRGIPVGIHKDKGISAAEVVFTILHAGGKFGGGGYKVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALSSWL R+ + G IYE F G + L G + TGT V FLP Sbjct: 116 HGVGASVVNALSSWLISRVYQHGKIYEQKFKKGHVVESLHPIG-TTDQTGTFVHFLPDET 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +++ L+ R +E +FL ++I LID+R E Y+GG+ FV +L+++K Sbjct: 175 IFEETVYDFAILKKRFQETAFLTKGLKIKLIDERVEPKLEKIFHYEGGVSEFVLFLNKNK 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ ++ +G +D++SI++A NDGY+EN+ F NNI +GGTHLSG ++ALT+ + Sbjct: 235 TPIYENIFYCEGEKDDVSIEVAFCHNDGYNENIFSFANNINTIEGGTHLSGFKNALTKTV 294 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K K + +S+ G+D REG T V+SIK+ +P+F QTK KLV++ VR++V++ V Sbjct: 295 NDYAKKMKILKDNDKSLSGEDIREGITGVISIKISEPKFEGQTKTKLVNTNVRTIVDNIV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +LE++P AKII++K AS RDAAR+ARDLTRRK VL+ ++LPGKLADCSER Sbjct: 355 SEKFMIFLEQNPTIAKIIIQKATMASHARDAARKARDLTRRKNVLENSTLPGKLADCSER 414 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPKK E+++VEGDSAGGSAK RSR+NQAILPLRGKILNVE+AR DKML+S+EI +ITA Sbjct: 415 DPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIRNMITA 474 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GI +D +I KLRYHKII+MTDADVDGAHIRTLLLTFF+R LI GF+YI +PP Sbjct: 475 FGAGINEDL-NIEKLRYHKIILMTDADVDGAHIRTLLLTFFYRFYRELITGGFIYIAQPP 533 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + + K Y ++ LE L + G ++ + L + ++ Sbjct: 534 LYLVEKNKKKHYAYNDRELELILTEIGRNGITRMQRYKGLGEMNPDQLWDT-----TMNP 588 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS--KLANRLNF 644 + + + +E I + + + KL L+ Sbjct: 589 ATRTLVKVNIEDAVEADEIFTALMGDKVEPRREFIKEYAKLVKNLDI 635 Score = 177 bits (448), Expect = 9e-42, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 15/238 (6%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + I + D + + + +E+A + + E + Sbjct: 410 DCSERDPKKCEIYIVEGDSAGGSAKSARSRQNQAILPLRGKILNVEKARLDKMLASEEIR 469 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + LN + K ++ V + F + Sbjct: 470 NMITAFGAGINEDLNIEKLRYHK-----------IILMTDADVDGAHIRTLLLTFFYRF- 517 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMN 746 Y+ + + L L+ K L + IGR GI+ MQRYKGLGEMN Sbjct: 518 YRELITGGFIYIAQPPLYLVEKNKKKHYAYNDRELELILTEIGRNGITRMQRYKGLGEMN 577 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 QLW+TT+NP TR+L++V I DA +AD++F+ LMGD+VEPRREFI+E + LDI Sbjct: 578 PDQLWDTTMNPATRTLVKVNIEDAVEADEIFTALMGDKVEPRREFIKEYAKLVKNLDI 635 >gi|26553455|ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2] gi|26453461|dbj|BAC43793.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2] Length = 649 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 265/601 (44%), Positives = 385/601 (64%), Gaps = 16/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + ++Y A +I+IL+GL+AV+KRP MYIG TD GLHHM++E++DN+IDE++ G Sbjct: 1 MNKETKKNTYSASNIKILEGLEAVRKRPGMYIGSTD-IKGLHHMVWEIVDNSIDEAMTGN 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A IT+TL +GS V D+GRGIP + H + S E ++T LHAGGKF+ SYKVSGGL Sbjct: 60 ASEITITLTKEGSAKVQDDGRGIPVEKHAKTKKSTVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTG-SAGNDTGTEVTFLPS 178 HGVG SVVNALSSWLK+ + +E + + F + G L VT A GT V F P Sbjct: 120 HGVGASVVNALSSWLKVWVYKEYKEHYIEFKDGGKPVADLKVTNEKASIKNGTIVEFYPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +I +F+ DT++ RL++L++LN ++I+ ID+R+ + T + GGI+ +V L+ Sbjct: 180 FEIMERAEFDADTIKSRLKQLAYLNKGIKINFIDERTDDK--ETFLFAGGIKQWVEELNN 237 Query: 239 HKKPLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 K+P++ + + + + NI +++A ++N Y+ + F NNI +GG+H Sbjct: 238 EKEPIVPTIVYDEREESVKAANNKDKYNIRVEVAFQYNKTYNNSTFTFCNNINTTEGGSH 297 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 G + AL + I + + K+ + +D EG T+++SIK P+P++ QTK KL Sbjct: 298 EEGFKFALQKIINKFAVEKKLLKETDEKISKEDAIEGLTAIVSIKHPNPQYEGQTKRKLG 357 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 +SEVR V + V++ +L E+P +A +I+KK L A R + AR+ TRRK + Sbjct: 358 NSEVRPFVSNVVSEIFEKYLLENPEDANVIIKKCLLAMEARKKSFEAREATRRKSPFESN 417 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 SLPGKLADCS +D + SEL++VEGDSAGGSAK GR R QAILPL+GKI+NVE+A+ DK+ Sbjct: 418 SLPGKLADCSTKDKEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEKAKSDKI 477 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 S++EI LITA+G G+G F I+KLRY+KII+MTDADVDG+HIR LLLTF FR M L Sbjct: 478 FSNEEIINLITAIGAGVG-PEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFRYMYPL 536 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 + NG +YI PPL+ + GKS +Y DE++LE++ S + G ++ + L Sbjct: 537 LENGNVYIACPPLFKFSVGKSSKYAYDEKTLEEFKKENSKVKYQIQRYKGLGEMNPDQLW 596 Query: 589 N 589 Sbjct: 597 E 597 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 4/219 (1%) Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645 I + ++ + I QA++ + N E + + ++ N + I Sbjct: 431 KEISELYIVEGDSAGGSAKLGRDRIFQAILPLKGKIINVEKAKSDKIFSNEEIINLITAI 490 Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 + + ++ V + F F Y + + + + Sbjct: 491 GAGVGPEFKIDKLRYNKIILMTDADVDGSHIRILLLTFLFRYMYPLLENGNVYIACPPLF 550 Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 +L + + +QRYKGLGEMN QLWETT++P R LL+V Sbjct: 551 KFSVGKSSKYAYDEKTLEEFKKENSKVKYQIQRYKGLGEMNPDQLWETTMDPKNRLLLKV 610 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD +FS LMGDEV PRREFI++N+ LDI Sbjct: 611 TIEDALNADKVFSLLMGDEVAPRREFIEKNAKYVKNLDI 649 >gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10] gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10] Length = 636 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 297/624 (47%), Positives = 419/624 (67%), Gaps = 18/624 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +YD + IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE++ G Sbjct: 1 MS--MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGI 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + ++ D S TV DNGRGIP + + S EV+MT LHAGGKF YKVSGGL Sbjct: 58 CDHIEIIVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALSS + +++KR+G+IY+ + G+ + V G + +D GT VTFLP + Sbjct: 118 HGVGVSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDS-DDHGTTVTFLPDPE 176 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ ++Y TL R+REL+FLN + ++L D+R+ Y+GGI +V +L+ Sbjct: 177 IFTETTVYDYTTLLTRIRELAFLNKGIALTLTDERTG--ASDYFKYEGGIIEYVKFLNEK 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + PI ++GSRDNI +++++++ND Y EN+ F NNI +GGTH SG +SALTR Sbjct: 235 KEALHEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES Sbjct: 295 INDYARKTGLIKDNTSNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESL 354 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L+E+P ++ I++K L AS R+AAR+AR++TRRK L++++LPGKLADCS Sbjct: 355 FAEKLQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LS+ EI +IT Sbjct: 415 KDASISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIIT 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGI + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M L+ G++YI +P Sbjct: 475 ALGTGI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQP 533 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKID 598 PL+ I R K ++Y E ++ + + +I G ++ L + Sbjct: 534 PLFKIERNKVIRYAGSERERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------E 584 Query: 599 KLIKDFYPNHDKTFIEQAVISGVF 622 + + IE A+++ Sbjct: 585 TTMDPESRTMLQVTIEDAILADTL 608 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S ++ Sbjct: 440 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 497 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + K + + I + + N + I Sbjct: 498 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSERERDEII 557 Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G I++QRYKGLGEMNA QLWETT++P++R++L+V I DA AD LF LMGD V Sbjct: 558 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 617 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FIQE++ LD+ Sbjct: 618 EPRRDFIQEHAKSVRNLDV 636 >gi|328954619|ref|YP_004371952.1| DNA gyrase subunit B [Coriobacterium glomerans PW2] gi|328454943|gb|AEB06137.1| DNA gyrase subunit B [Coriobacterium glomerans PW2] Length = 674 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 287/595 (48%), Positives = 400/595 (67%), Gaps = 17/595 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + Y+ I+IL+GL+AV+KRP MYIG T SGLHH++YEV+DN++DE++ GY I Sbjct: 3 KKNDYNGGEIKILEGLEAVRKRPGMYIGSTSA-SGLHHLVYEVVDNSVDEAMAGYCTRIG 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV DNGRGIP D H + I EV+MT LHAGGKF+ K+YKVSGGLHGVG+ Sbjct: 62 VTIHADNSVTVIDNGRGIPVDKHPVKRIPTLEVVMTILHAGGKFDNKAYKVSGGLHGVGI 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS +++++KR+GNIYEM F G + + G + TGT +TF P +IF Sbjct: 122 SVVNALSHRVRVQVKRDGNIYEMVFSRGKTVEKMHIVG-SSRSTGTTITFWPDDEIFETT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKPL 243 F+YDTL++RL+E +FLN +++I++ D+R PR Y GGI FV Y + Sbjct: 181 IFDYDTLRNRLQETAFLNRNLRITITDERELAPRTEEFVYAGGIVDFVKYLNHGKDIPEG 240 Query: 244 MQSPIRIQGS-------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 ++ PI + G+ +++A++W+ Y ENV+C+ N+I +GG HL G R+AL Sbjct: 241 LKKPIYVSGASEEDAPVERTGEVEVALQWSSSYTENVMCYANDIFTPEGGMHLEGFRTAL 300 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y + K+ ++ GDD REG +V+S+K+ DP+F QTK KL SS +R +V Sbjct: 301 TRVINDYARRQNMIKEKDANLTGDDVREGLAAVISVKLADPQFEGQTKAKLGSSFMRGLV 360 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++DGLS +LEEHP + IV+K AS R+AAR+AR+ TRRK +L+ A+LPGKLAD Sbjct: 361 LKVLSDGLSDYLEEHPRAGREIVRKAQQASRARNAARKAREATRRKSLLETAALPGKLAD 420 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS RD + +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER + SS+ I + Sbjct: 421 CSVRDAEMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQS 480 Query: 477 LITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 LITA+G+G+ + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF++ M LI Sbjct: 481 LITAIGSGVTQVQGDGEGFDVSKARYHKIIIMTDADVDGAHIRTLLLTFFYKYMRPLIDE 540 Query: 532 GFLYIIKPPLYGITRGKSLQYVK-DEESLEDYLINQSLSEEIELFCDSKGVISKN 585 GF+Y+ PP++G+ GK + YV D + E+ ++ ++++ + + + Sbjct: 541 GFVYVACPPIFGVKVGKKIHYVYPDGRTPEEEILRRTITSLGLDPDEDADELEAD 595 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 +G ++QRYKGLGEM+ +QL TT++P TR L RV I DAS A+ LMG +V PRR++ Sbjct: 602 RGYAVQRYKGLGEMDPAQLASTTMDPKTRILQRVTIEDASLAERAVRELMGPDVAPRRDY 661 Query: 792 IQENSLPSA-LD 802 I++++ + LD Sbjct: 662 IEKHAHDARFLD 673 >gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus thuringiensis serovar alesti] Length = 632 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 283/583 (48%), Positives = 400/583 (68%), Gaps = 6/583 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V++ Sbjct: 3 AYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINVSI 61 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D S V+DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG SVV Sbjct: 62 EEDNSILVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 121 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-F 187 NALS+ L++ + R+G I+ + GI L V G + TGT F P +IF + Sbjct: 122 NALSTELEVFVHRDGKIHYQKYERGIPVADLKVIGDT-DKTGTITRFKPDPEIFKETTEY 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + P Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHEEP 239 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + ++GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y K+ Sbjct: 240 VYVEGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKN 299 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ + Sbjct: 300 NILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKF 359 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L E+P A+ IV K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP SE+ Sbjct: 360 LLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEI 419 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAKQGR QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT IG Sbjct: 420 YIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG 479 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI K RYHK+IIMTDADVDGAHIRTLL TFF+R M +I G++YI +PPL+ + +G Sbjct: 480 D-FDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYIYIAQPPLFKVQQG 538 Query: 548 KSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 K +QY +++ LE L + G ++ L Sbjct: 539 KKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 160/467 (34%), Gaps = 49/467 (10%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG S G + + N+ ++ G Sbjct: 241 YVEG-SKDGIQVEVALQYNEG------------YTNHIYSFTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKP- 539 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 540 ---------PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 + + + + D+ ++ + S +S L Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVDKGTMAARARVAAKKARELTRRKSALEVS--SLPGK 405 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D D I + Y + A + ++ + + + RL+ I E Sbjct: 406 LADCSSKDPAISEIYIVEGDSAGGSAKQGRDCHFQAILPLKGKIINVEKARLDKILSNDE 465 Query: 651 KSWHGSI------NNSDILVKRIAR-GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE---- 699 + + DI R + + ++G+ I + + + +I E Sbjct: 466 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLFTFFYRYMGQIIECGYI 525 Query: 700 -NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLN 756 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++ Sbjct: 526 YIAQPPLFKVQQGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMD 585 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ LD Sbjct: 586 PEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKFVKNLD 632 >gi|332299200|ref|YP_004441122.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168] gi|332182303|gb|AEE17991.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168] Length = 638 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 287/634 (45%), Positives = 407/634 (64%), Gaps = 10/634 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N+SY A +I +LKGL+AV+KRP MYIG T G GLHH++YEV+DN IDE++ G+ D I V Sbjct: 2 NASYSASNITVLKGLEAVRKRPGMYIGST-GPDGLHHLVYEVVDNCIDEAMAGFCDTIVV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L D V DNGRGIP D+H EGISA E+++TRLHAGGKF++ SYKVSGGLHGVGVS Sbjct: 61 VLEKDDIVRVEDNGRGIPVDIHPTEGISALELVLTRLHAGGKFDKGSYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VNALSSWL+ ++++G Y M F G ++P+ TG+ T + + S IF Sbjct: 121 CVNALSSWLEAYVEKDGKKYYMKFNTGAAESPVKETGTTDRRG-TTIRWKADSTIFTETT 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +N+D L RLREL+FLNS ++I D+R P+E+ ++GGI FVSYL+ KK + + Sbjct: 180 TYNFDVLCTRLRELAFLNSGIKIVFRDERLTNPKEVVFQFEGGIRHFVSYLNEGKKVIPE 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ I G RD+I ++L +++NDGY+EN+L F N+I ++GGTHL GL+SALT + +++ Sbjct: 240 EPVYISGERDDIQVELCIQYNDGYNENMLSFVNDINTREGGTHLEGLKSALTLVMNEFLK 299 Query: 306 KSFGSK---KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 + + + G+D R G TSV+S+K+P+P+F QTK KL ++EVR +V S N+ Sbjct: 300 NNAKLLKKMDKEEKLTGEDVRAGLTSVISVKVPEPQFEGQTKTKLGNTEVRGIVASLSNE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ + E++P + I++K + + R AAR+A++ TRRK +D LPGKLADCS +DP Sbjct: 360 QLTLFFEQNPRLIEQILEKAVSEAAARIAARKAKEATRRKNSMDSFGLPGKLADCSSKDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + E+++VEGDSAGGSAKQGR + QAILPL GK+LNVE+ R DK++++ ++ +I +LG Sbjct: 420 TECEVYIVEGDSAGGSAKQGRDPKIQAILPLWGKMLNVEKTRIDKVINNDKLQPVIASLG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D F++ KLRYHKIIIM DADVDG+HI TLLLTFFFR MP LI +G++YI PPLY Sbjct: 480 AGIGKD-FNVEKLRYHKIIIMADADVDGSHISTLLLTFFFRYMPQLIEHGYVYIAMPPLY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I GK +V + ++ L + KG+ + + +D + Sbjct: 539 KIKLGKKEHFVFSDAERDEILQTLGDDKGKVDIQRYKGL--GEMEWKELKE-TTMDPANR 595 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I E + + Sbjct: 596 KMKRVELTDAVAADHIFTTLMGEEVEPRRKFIED 629 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V KL + + K ++ ++ V + Sbjct: 454 MLNVEKTRIDKVINNDKLQPVIASLGAGIGKDFNVEKLRYHKIIIMADADVDGSHISTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KG-ISMQR 738 F F + I + + + + + + + ++G KG + +QR Sbjct: 514 LTFFFRYMPQLIEHGYVYIAMPPLYKIKLGKKEHFVFSDAERDEILQTLGDDKGKVDIQR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM +L ETT++P R + RV++TDA AD +F+ LMG+EVEPRR+FI++N++ Sbjct: 574 YKGLGEMEWKELKETTMDPANRKMKRVELTDAVAADHIFTTLMGEEVEPRRKFIEDNAVY 633 Query: 799 SALDI 803 + LD+ Sbjct: 634 ATLDV 638 >gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551] gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551] Length = 638 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 297/589 (50%), Positives = 417/589 (70%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + +Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D Sbjct: 2 EQKEVQAYEADQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEIVDNSIDEALAGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V + D S TV DNGRGIP + ++ G A EVI+T LHAGGKF YKVSGGLHG Sbjct: 61 EINVIIEKDNSITVKDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS+ L++ + R+G ++ + G+ L V G + TGT + F P +IF Sbjct: 121 VGASVVNALSTSLEVHVHRDGKVHYQKYERGVPAADLKVVGET-DKTGTVIQFRPDGEIF 179 Query: 183 SVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + ++++DTL +RLREL+FLN ++I++ DKR + R Y+GGI+++V +L+R K+ Sbjct: 180 TETLEYDFDTLANRLRELAFLNRGIKITIEDKREEDKRRE-YHYEGGIKSYVEHLNRSKE 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + + PI I+G+RDNIS+++A+++ND Y N+ F NNI +GGTH +G ++ALTR I Sbjct: 239 VIHEEPIYIEGNRDNISVEIAIQYNDSYTSNLYSFANNIHTYEGGTHEAGFKTALTRVIN 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R++ +S Sbjct: 299 DYARKNSVFKDSDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L +L E+P+ AK +++K L A+ R AA++AR+LTRRK L+I++LPGKLADCS +D Sbjct: 359 EHLETYLLENPIVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL++VEGDSAGGSAKQGRSR QAILPLRGKI+NVE+AR DK+LS+ EI T+ITAL Sbjct: 419 PSISELYVVEGDSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITAL 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG D FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL Sbjct: 479 GTGIG-DDFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPL 537 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y +++GK ++Y ++ LE+ L + + G ++ L Sbjct: 538 YKVSQGKKVEYAYNDRQLEEVLASFPEGAKPNLQRYKGLGEMNPEQLWE 586 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 134/330 (40%), Gaps = 31/330 (9%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEE 557 +DA++ G +R + + P G + + Y+ + Sbjct: 310 SDANLTGEDVREGITAIISIKHPDPQFEGQTKTKLGNSEARTITDSVFAEHLETYLLENP 369 Query: 558 SLEDYLINQSLSEEIELFCDS--------KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 + +I + L K + ++L + D D I + Y Sbjct: 370 IVAKKVIEKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYVVEG 429 Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW------HGSINNSDIL 663 + A + ++ + + + RL+ I +E G ++ DI Sbjct: 430 DSAGGSAKQGRSRHFQAILPLRGKIINVEKARLDKILSNNEIRTIITALGTGIGDDFDIS 489 Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNGDKIKIT 717 R + V ++G+ I + F +Y R I + L + G K++ Sbjct: 490 KARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYVYIAQPPLYKVSQGKKVEYA 549 Query: 718 GPCSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + + G K ++QRYKGLGEMN QLWETT++P+ R+LL+V + DA +AD Sbjct: 550 YNDRQLEEVLASFPEGAK-PNLQRYKGLGEMNPEQLWETTMDPEFRTLLQVNLQDAIEAD 608 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + F LMGD+VEPRR FI+EN+ LDI Sbjct: 609 ETFEILMGDKVEPRRNFIEENAQYVKNLDI 638 >gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA] gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA] Length = 649 Score = 582 bits (1500), Expect = e-163, Method: Composition-based stats. Identities = 278/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +++ + G I+ + G + L V G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGDT-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN + IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGMEQSKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K+ + +PI G ++I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKEVIFDNPIYTDGEMEDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FDI+K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAD-FDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGADQEIKLQEAL--ARYSEGRSKPSIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMDPEHRLMARVSVDDAAEADKI 622 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + + I G +I L +S GR S+QRYKGLGEM+ QLWETT++P+ Sbjct: 547 KVGSEVKEYIQPGADQEIK-LQEALAR-YSEGRSKPSIQRYKGLGEMDDHQLWETTMDPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 649 >gi|160935172|ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC BAA-613] gi|158441903|gb|EDP19600.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC BAA-613] Length = 657 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 283/644 (43%), Positives = 388/644 (60%), Gaps = 14/644 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A IQIL+GL+AV+KRPSMYIG T + GLHHM+YE++DNA+DE+L G+ +I V Sbjct: 11 TEDYGAAQIQILEGLEAVRKRPSMYIGSTSSQ-GLHHMVYEIVDNAVDEALAGHCTLIQV 69 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN DGS TV DNGRGIP + + G+SA +V+ T LHAGGKF+ +YKVSGGLHGVG S Sbjct: 70 YLNKDGSVTVRDNGRGIPAGIQTKTGLSAIQVVFTVLHAGGKFDDSNYKVSGGLHGVGAS 129 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDT-GTEVTFLPSSDIFSVQ 185 VVNALSS L +++ ++G Y S+ GI P+ G T GT VTF+P DIF Sbjct: 130 VVNALSSHLHVQVDQDGFSYAQSYERGIPAAPVKQLGPCSQGTHGTTVTFMPDQDIFPSI 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK---------RSPEPREITMFYKGGIEAFVSYL 236 ++ + L+ RLRE +FL ++ISL D T ++ G++ FVS+L Sbjct: 190 AWDRNILEERLRETAFLTQGLEISLYDLRRDPAGEATCPVTAWSRTFCFQNGLKDFVSWL 249 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 ++ +PL I + D + + A+ N Y E +L F NNI +GGTH++G R AL Sbjct: 250 EQDGEPLYTGIISGRHETDKVQAEFALVHNSSYSEQLLSFANNISTPEGGTHVTGFRQAL 309 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 +R + Y + K S+ D+ EG T+VLS+++ D +F QTK+KL SS VR VV Sbjct: 310 SRAVNDYARNAKLLKDTDSSLSRDELSEGLTAVLSVRLQDAQFEGQTKQKLGSSHVRPVV 369 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E V L+ +LE++P AK I K + A R AAR AR++ RRK L SLPGKLAD Sbjct: 370 EQMVYTRLTLFLEQNPAAAKAICDKAMLARKARTAARTAREMARRKTALSGLSLPGKLAD 429 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS ++P + ELF+VEGDSAGGSAK RSRENQA+LPLRGKILNVE+A D++ ++ EI Sbjct: 430 CSSKNPGECELFIVEGDSAGGSAKLARSRENQAVLPLRGKILNVEKASLDRISANAEIKA 489 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I+A GTGI D+F + LRY+KII+MTDADVDGAHI TLLLTF FR MP LI G +++ Sbjct: 490 MISAFGTGI-LDTFSLENLRYNKIILMTDADVDGAHITTLLLTFLFRFMPKLIEEGHVFL 548 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYL--INQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 +PPLY + +GK L Y + LE + I + + +I+ + + + +D + Sbjct: 549 AQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGTYKIQRYKGLGEMDAGQLWETTMDPS 608 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + I + I E + + A + Sbjct: 609 RRTLLRITINDMEMYHETCQTFSILMGDEVEPRKNFILEHAQYI 652 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 10/123 (8%) Query: 691 RIFSNRIEEN----YLTILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGE 744 R IEE L + G K+ L TI +IGR G +QRYKGLGE Sbjct: 535 RFMPKLIEEGHVFLAQPPLYRVEKGKKLWYAYSDSELEQTINAIGRDGTYKIQRYKGLGE 594 Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS---QADDLFSRLMGDEVEPRREFIQENSLPSA- 800 M+A QLWETT++P R+LLR+ I D + FS LMGDEVEPR+ FI E++ + Sbjct: 595 MDAGQLWETTMDPSRRTLLRITINDMEMYHETCQTFSILMGDEVEPRKNFILEHAQYISM 654 Query: 801 LDI 803 LDI Sbjct: 655 LDI 657 >gi|332638148|ref|ZP_08417011.1| DNA gyrase subunit B [Weissella cibaria KACC 11862] Length = 648 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 289/646 (44%), Positives = 409/646 (63%), Gaps = 17/646 (2%) Query: 1 MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ Q YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MAEEDVTQMHTQADDYDASQIQVLEGLEAVRKRPGMYIGTTTSQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+AD ITVT+ D S TV+DNGRGIP D+ ++ G A E + T LHAGGKF Y Sbjct: 60 EALAGFADHITVTIEKDNSITVTDNGRGIPVDIQEKTGKPALETVFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTE 172 KVSGGLHGVG SVVNALS+ L + R+G Y M F G + + A GT Sbjct: 120 KVSGGLHGVGASVVNALSTELDAVVVRDGKGYAMDFERGHVKTSMHNVPVDDAPVSRGTI 179 Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V FLP DIF ++Y L +R+REL+FLN ++IS+ D R EP + Y+GGI+ Sbjct: 180 VHFLPDPDIFRETTVYDYKILMNRVRELAFLNKGLRISIADNRPDEPISESFHYEGGIKE 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 +V +L+ +K + PI ++G + I +++++++ D YH N+L FTNNI +GGTH +G Sbjct: 240 YVDFLNTNKDVIFDDPIYVEGMDNGIEVEVSLQYTDDYHSNMLSFTNNIHTYEGGTHETG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 +SALTR I Y K+ K+ ++ GDD REG T+++S+K PDP+F QTK KL +S+ Sbjct: 300 FKSALTRVINDYARKNNLLKESDDALSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSD 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R+ V+ ++ S ++ E+P AK IV+K + A R AA+RAR+ TR+K L+IA+LP Sbjct: 360 ARTAVDRMFSETFSRFMLENPTVAKQIVEKGILAGKARLAAKRAREATRKKSGLEIANLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLAD + +DP+ SELF+VEGDSAGGSAKQGR R QAILP+RGKILNVE+A DK+L++ Sbjct: 420 GKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASLDKILAN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI +L TA+GTG G + FD+ K +YHK+IIMTDADVDGAHIRTLLLT +R M L+ Sbjct: 480 EEIRSLFTAMGTGFGNE-FDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEA 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590 G++YI +PPLY + +GK +QY+ +E LE L S + + G + L Sbjct: 539 GYIYIAQPPLYQVRQGKFVQYLDSDEELEALLPTLPASPKPVIQRYKGLGEMDAEQLWET 598 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D ++ ++ ++ + + + + Sbjct: 599 -----TMDPSVRRLLRVEMDDAVDADMVFSMLMGDKVEPRREFIEE 639 Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats. Identities = 44/68 (64%), Positives = 56/68 (82%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P R LLRV++ DA AD +FS LMGD+VEPRREFI+EN Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPSVRRLLRVEMDDAVDADMVFSMLMGDKVEPRREFIEEN 640 Query: 796 SLPSALDI 803 + + LD+ Sbjct: 641 AQYAELDV 648 >gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC 43243] gi|217989766|gb|EEC55777.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC 43243] Length = 638 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 293/585 (50%), Positives = 397/585 (67%), Gaps = 5/585 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+ IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY I V Sbjct: 2 AEYGAEQIQILEGLEAVRKRPGMYIGTTSS-RGLHHLVYEIVDNAVDEALAGYCTEIDVL 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV+DNGRG+P D++ + G A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 61 INKDNSITVTDNGRGVPVDINAKAGKPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186 VNALS WL++R+KR G+IYE + G + PL + G +TGT V FLP +IF+ Sbjct: 121 VNALSEWLEVRVKRNGHIYEQRYQRGKVMEPLTIVGECPLEETGTMVHFLPDKEIFTETT 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + YD L+ RLRE++FL ++I L D+R +E Y+GGI+ FV YL++ K PL + Sbjct: 181 VYEYDILKQRLREMAFLTKGIKIILRDEREGIEQERVFHYEGGIKEFVEYLNKSKTPLYE 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G ++N+ +++AM+ ND Y E+ F NNI +GGTHL+G ++ALT+ Y Sbjct: 241 QIIYCEGVKNNVQVEVAMQHNDSYTESTFTFVNNINTPEGGTHLAGFKNALTKTFNDYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K +++ GDD REG T+++S+K+ DP+F QTK+KL ++E R+ V+S V++ L+ Sbjct: 301 ANRILKDSDQNLTGDDIREGLTAIVSVKIEDPQFEGQTKQKLGNTEARTAVDSVVSEQLT 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK I +K L A RDAAR+ARDLTRRK L+ SLPGKLADC++++P+ Sbjct: 361 YFLEQNPAVAKAICEKSLLAQRARDAARKARDLTRRKTALESTSLPGKLADCTDKNPENC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D +L + EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDHVLGNAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ +PPLY I Sbjct: 481 -HDDFDISKLRYHKIIIMTDADVDGAHIATLLLTFLYRFMPELIKQGHVYLAQPPLYKIE 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589 + K + Y +E L + + + + G + L Sbjct: 540 KNKKVWYAYSDEELNNIMTEIGRDQNNKVQRYKGLGEMDAEQLWE 584 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L I K+ L+ I + + + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 533 PPLYKIEKNKKVWYAYSDEELNNIMTEIGRDQNNKVQRYKGLGEMDAEQLWETTMDPEKR 592 Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV + D AS+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 593 ILLRVNMDDDSASELDVTFTTLMGDKVEPRREFIETNAKYVKNLDI 638 >gi|227876546|ref|ZP_03994657.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|227842860|gb|EEJ53058.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] Length = 671 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 271/604 (44%), Positives = 367/604 (60%), Gaps = 27/604 (4%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD YDA I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G Sbjct: 1 MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VTL DGS V DNGRGIP H E EV+MT LHAGGKF SY VSGG Sbjct: 60 YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS+ + +KR+G + + F NG + G +TGTE F P Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218 IF +F+Y+TL+ R ++++FLN ++I++ D+R Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKVGH 239 Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275 R ++ Y+ G+ +VS+++ K + + I + D++++++A++W Y E++ Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G RSALT + Y K ++ GDDCREG T+V+S+K+ Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 P+F QTK KL ++E R+ V+ V L W + HP EAK I+ K A + R+AAR+A Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD + E+F+VEGDSAGGSA GR +QAILPLRG Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR DK L ++EI +LITA GTGIG+D FD++KLRYHKI++M DADVDG HI T Sbjct: 480 KILNVEKARLDKALDNKEIQSLITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHIAT 538 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI G +++ PPLY + + +D L++ L L Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKDKLLDMGLEGGGRLP 598 Query: 576 CDSK 579 + Sbjct: 599 KEGG 602 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P R L +V + +A+ AD+ FS LMG++V RR FIQ N Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFSLLMGEDVASRRSFIQRN 662 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 663 AQDVRFLDI 671 >gi|307352947|ref|YP_003893998.1| DNA gyrase,subunit B [Methanoplanus petrolearius DSM 11571] gi|307156180|gb|ADN35560.1| DNA gyrase, B subunit [Methanoplanus petrolearius DSM 11571] Length = 640 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 283/592 (47%), Positives = 395/592 (66%), Gaps = 11/592 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y+A +I +L+GL+ V++RP+MYIG TD GLHH++YEV+DNA+DE+L G D I Sbjct: 1 MAQNNYNASNITVLEGLEPVRERPAMYIGSTD-VRGLHHLVYEVVDNAVDEALAGVCDHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEE-GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 VTL DG+CTV DNGRGIP D+ +E+ G SA EV+MT LHAGGKF++ +Y+VSGGLHGV Sbjct: 60 IVTLGRDGTCTVEDNGRGIPVDIMEEQDGKSALEVVMTVLHAGGKFDKNTYQVSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG----SAGNDTGTEVTFLPSS 179 GVSVVNALS +L++ + R+G IY+M F G L + L A GT+++F P + Sbjct: 120 GVSVVNALSEFLQVEVFRDGYIYDMGFARGGLKSDLTSRKNAAPDAFEKHGTKISFKPDA 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F+YD L HR+REL+FLN + I + D+RS Y+GGI FV+YL Sbjct: 180 LIFETVTFDYDILSHRMRELAFLNRGITIEISDERSG--YADIFNYEGGISEFVTYLITG 237 Query: 240 KKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ + I +++A++++ Y E ++ F N++ ++GGTHL G RSALT Sbjct: 238 KETVHPDVIYFDTKDAASMTEVEVALQYSTAYSETMMTFVNSVNTREGGTHLEGFRSALT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I + + K S+ G+D REG +V+S+K+ +P+F QTK +L +S V+ +V+ Sbjct: 298 RAINKSAKDNNLMKGMSESLKGEDVREGLVTVISLKVANPQFEGQTKMRLGNSNVKGIVD 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S V L+ + EE+P + IV K + A+ R+AAR+AR+L RRK L+ LPGKLADC Sbjct: 358 SLVYQSLTEYFEENPKVIQAIVSKAVGAARAREAARKARELARRKSTLESGGLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 SERDP KSE+++VEGDSAGGSAKQGRSR+ QAILPLRGKILNVE+A ++L + EI TL Sbjct: 418 SERDPSKSEIYIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVEKANPHRILKNAEIQTL 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I+A+G G G+ FD+ K RYH II MTDADVDGAHI TLLLTFF+R MP LI G++YI Sbjct: 478 ISAIGCGFGES-FDVEKARYHHIIFMTDADVDGAHICTLLLTFFYRYMPELIEKGYIYIA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +PPL+ + +GK+ +Y EE ++ Y+ G ++ + L + Sbjct: 537 QPPLFRVAKGKNEKYAFSEEEMKRYVKEFGDKGVSVQRYKGLGEMNADQLWH 588 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + +++ ++ I +S+ ++ V + Sbjct: 457 ILNVEKANPHRILKNAEIQTLISAIGCGFGESFDVEKARYHHIIFMTDADVDGAHICTLL 516 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + I I + + ++ + + G KG+S+QRYK Sbjct: 517 LTFFYRYMPELIEKGYIYIAQPPLFRVAKGKNEKYAFSEEEMKRYVKEFGDKGVSVQRYK 576 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW TT+ P++R L +V + +AS AD++FS+LMGD+VE R+EFI +S Sbjct: 577 GLGEMNADQLWHTTMAPESRVLKQVSVIEASYADEIFSKLMGDDVEARKEFIIRHSKEVT 636 Query: 800 ALDI 803 LDI Sbjct: 637 NLDI 640 >gi|229824639|ref|ZP_04450708.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271] gi|229786010|gb|EEP22124.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC 51271] Length = 640 Score = 581 bits (1499), Expect = e-163, Method: Composition-based stats. Identities = 290/646 (44%), Positives = 421/646 (65%), Gaps = 10/646 (1%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ +Q+ YDA IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G Sbjct: 1 MTEQMQSPQQYDAGQIQVLEGLEAVRKRPGMYIGSTS-IVGLHHLVWEIVDNSIDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VT+ + S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGG Sbjct: 60 YCDHIEVTIEANNSITVQDNGRGIPVDIQPQTGRPAVETVFTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS+ L +++ R+G +Y+ + G ++ L V G A +TGT+V FLP Sbjct: 120 LHGVGASVVNALSTELTVQVSRDGKLYQQRYHRGAVEGDLEVIGQAT-ETGTKVNFLPDP 178 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ F Y+ L+ R+REL+FLN ++I++ DKR + + + Y+GGI+++V +L++ Sbjct: 179 AIFTETTVFEYERLKKRIRELAFLNKGLRITIEDKRLDQEEKDSFHYEGGIKSYVQHLNQ 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 HK P+ + PI I+G D+I ++++M++ D YH +L F NNI +GG+H +G ++ LTR Sbjct: 239 HKTPIFEEPIYIEGEVDDIQVEISMQYTDSYHTTILSFANNIHTHEGGSHEAGFKTGLTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K++ ++ G+D REG T VLSIK PDP+F QTK KL +SEVR++ + Sbjct: 299 VINDYARKMNLIKENDENLTGEDVREGLTLVLSIKHPDPQFEGQTKTKLGNSEVRAITDR 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++G +L E+P A+IIV K + A+ R AA+RAR++TRRK V++I++LPGKLADCS Sbjct: 359 LFSNGFDVYLMENPKVARIIVDKGILAAKARMAAKRAREMTRRKSVMEISNLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+ + ELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++EI +L Sbjct: 419 SREAELCELFIVEGDSAGGSAKQGRSRMYQAILPIRGKILNVEKASMDKILNNEEIRSLF 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+GTG G + FD+ K RYHK+I+MTDADVDGAHIRTLLLT +R M L+ G++YI K Sbjct: 479 TAMGTGFGGE-FDVAKARYHKLILMTDADVDGAHIRTLLLTLIYRYMRPLLDAGYVYIAK 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +GK Y+ + L+++ + G ++++ L ++ Sbjct: 538 PPLYQVKQGKRAIYLDTDAELKEWQEENPNARYTIQRYKGLGEMNEDQLWET-----TMN 592 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + IE + + + + + N Sbjct: 593 PENRRMLQVTVEDAIEAEAVLEMLMGDDVEPRRAFIEDNAVYVENL 638 Score = 170 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGISMQR 738 + + +Y R + K I L + ++QR Sbjct: 515 LLLTLIYRYMRPLLDAGYVYIAKPPLYQVKQGKRAIYLDTDAELKEWQEENPNARYTIQR 574 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NP+ R +L+V + DA +A+ + LMGD+VEPRR FI++N++ Sbjct: 575 YKGLGEMNEDQLWETTMNPENRRMLQVTVEDAIEAEAVLEMLMGDDVEPRRAFIEDNAVY 634 Query: 799 S-ALDI 803 LDI Sbjct: 635 VENLDI 640 >gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1] gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4] Length = 645 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 298/591 (50%), Positives = 394/591 (66%), Gaps = 5/591 (0%) Query: 2 SDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 ++ I+N + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY Sbjct: 3 TEKIENPNEYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGY 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N D S TV D+GRGIP ++ + G SA EV+ T LHAGGKF YKVSGGL Sbjct: 62 CKNIEVTINPDNSITVEDDGRGIPVGMNHKAGKSALEVVYTVLHAGGKFGGGGYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS+ L + + +EG +Y S+ G D P+ V G+ GT+VTF P Sbjct: 122 HGVGASVVNALSTKLCVEVYKEGQVYFQSYHIGKPDEPVKVIGTCDSEKHGTKVTFHPDP 181 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF ++YDTL+ RLRE +FL ++I L D R Y GGI+ FV+YL+R Sbjct: 182 EIFEETVYDYDTLKQRLRETAFLTKGLRIVLTDTREESHHCHEFHYAGGIKEFVTYLNRS 241 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L I +G+RD + +++AM+ ND Y++ F NNI +GGTHL+G R+ALT+ Sbjct: 242 KEALYPDVIYCEGTRDGVYVEVAMQHNDSYNDATYSFVNNIITPEGGTHLAGFRNALTKT 301 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 +Y + K + ++ GDD REG T+++SIK+ +P+F QTK+KL +SE R V+S Sbjct: 302 FNTYARANKILKDSEPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVDSV 361 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L+ +LE++P AK I +K L A R+AAR+ARDLTRRK L+ SLPGKLADCS+ Sbjct: 362 VSEQLTYFLEQNPAVAKSICEKSLLAQRAREAARKARDLTRRKTALEGTSLPGKLADCSD 421 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DPK E+F+VEGDSAGGSAK RSR QAILPLRGKILNVE+AR DK+ + EI +IT Sbjct: 422 KDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 481 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI +D FDI+KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ P Sbjct: 482 AFGTGIHED-FDISKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKQGHVYLATP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 PLY I + K++ Y D+ L + LI G + L Sbjct: 541 PLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNKIQRYKGLGEMDAEQLWE 591 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + +++ + + + S D ++ V + Sbjct: 459 ILNVEKARLDKIYGNAEIKAMITAFGTGIHEDFDISKLRYDKIIIMTDADVDGAHIATLM 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRY 739 F + + I + + + N + L + + IGR G + +QRY Sbjct: 519 LTFLYRFMPELIKQGHVYLATPPLYKIEKNKNIWYAYDDAELNNILIEIGRDGNNKIQRY 578 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSL 797 KGLGEM+A QLWETT++P+ R L RV I + + + D F+ LMGD+VEPRREFI+EN+ Sbjct: 579 KGLGEMDAEQLWETTMDPEKRILKRVMIDEENSSEIDVTFTTLMGDKVEPRREFIEENAK 638 Query: 798 PS-ALDI 803 LDI Sbjct: 639 YVQNLDI 645 >gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281361|gb|EDT46796.1| hypothetical protein STRINF_01800 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 650 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 274/576 (47%), Positives = 385/576 (66%), Gaps = 9/576 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + R+G I+ + G + + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDGEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGISSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K + PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 FINENKDVIFDKPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ GDD REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDAFGRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 YI +PP+YG+ G ++ + ++ + ++ Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEAELQAAIER 573 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR S+QRYKGLGEM+ QLW TT++P+ R + RV + DA++AD +F LMGD+VEP Sbjct: 575 SNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEP 634 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LDI Sbjct: 635 RREFIEENAVYSTLDI 650 >gi|296268004|ref|YP_003650636.1| DNA gyrase subunit B [Thermobispora bispora DSM 43833] gi|296090791|gb|ADG86743.1| DNA gyrase, B subunit [Thermobispora bispora DSM 43833] Length = 647 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 281/551 (50%), Positives = 372/551 (67%), Gaps = 9/551 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YE++DNA+DE+L G+ D I VTL Sbjct: 2 SYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAVDEALAGHNDRIDVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V+D GRGIP + EG A EV+ T LHAGGKF++KSY VSGGLHGVG SVV Sbjct: 61 LADGGVRVADRGRGIPVGIVPSEGRPAVEVVFTVLHAGGKFDRKSYAVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS L++ ++ +G+++ S++ PL G +D GT VTF P IF +N Sbjct: 121 NALSKRLEVEVRTDGHVWRQSYVQAKPTGPLQK-GEPTDDHGTTVTFWPDETIFETTTWN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++TL R +E++FLN + I+L D+R + EP+ +T Y+GG+ FV+YL+ K+P+ Sbjct: 180 FETLSRRFQEMAFLNKGLTITLTDERPEYINGEPKVVTYHYEGGLADFVTYLNSKKEPIH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + D IS+++AM+WN Y E+V F N I +GGTH G R+ALT + Y Sbjct: 240 GSVIYFEEHGDGISVEVAMQWNASYTESVYTFANTINTAEGGTHEEGFRAALTSVVNRYA 299 Query: 305 EKSFGSKK-DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ ++ GDD REG +++S+K+ +P+F QTK KL ++E +S V+ ND Sbjct: 300 REQRYLKEGKDDNLTGDDVREGLAAIISVKLANPQFEGQTKTKLGNTEAKSFVQKACNDH 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADCSERDP 422 L W E +P EAK I+ K + AS R AAR+ARDLTRRK +L+ + LPGKLADC DP Sbjct: 360 LRDWFERNPGEAKEIINKAIQASRARIAARQARDLTRRKSLLESGSGLPGKLADCQWSDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +K ELF+VEGDSAGGSAK GR QAILP+RGKILNVE+AR DK+L + EI LITALG Sbjct: 420 EKCELFIVEGDSAGGSAKGGRDPRFQAILPIRGKILNVEKARIDKVLRNNEIQALITALG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG+ D FDI+KLRYHK+I+M DADVDG HI TLLLT FR M LI G +Y+ +PPLY Sbjct: 480 TGV-HDDFDISKLRYHKLILMADADVDGQHITTLLLTLLFRFMRPLIEAGHVYLAQPPLY 538 Query: 543 GITRGKSLQYV 553 I + + Sbjct: 539 KIKWDRKGEDA 549 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNASQLWETT+NP+TR L +V + DA+QAD+LFS LMG++VE RR+FI N Sbjct: 579 VQRFKGLGEMNASQLWETTMNPETRILRQVTLDDAAQADELFSVLMGEDVEARRQFIIRN 638 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 639 ARDVRFLDV 647 >gi|156744114|ref|YP_001434243.1| DNA gyrase subunit B [Roseiflexus castenholzii DSM 13941] gi|156235442|gb|ABU60225.1| DNA gyrase, B subunit [Roseiflexus castenholzii DSM 13941] Length = 653 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 281/623 (45%), Positives = 407/623 (65%), Gaps = 19/623 (3%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+ + + YD D IQ+L+G++AV++RP MYIG TD +GLH M+ EV+DN++DE Sbjct: 9 MTTEPLRSVNATGYDEDQIQVLEGMEAVRRRPGMYIGPTD-VNGLHTMVREVVDNSVDEV 67 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 + G A + VT++ DGS TV+D+G GIPT H + G+S +V+MT LHAGGKF+ KSYKV Sbjct: 68 MAGRATTVEVTIHEDGSVTVADDGYGIPTGPHPKLGVSTLQVVMTVLHAGGKFDNKSYKV 127 Query: 117 SGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 S GLHGVGVS VNALS+++++ + R+G Y + G+ + G GT Sbjct: 128 SSGLHGVGVSAVNALSAYMRVDVHNARDGMHYYQEYRCGVPQCEVQKVGPTT-RRGTITR 186 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FLP + I D+N+ TL R RE+++LN ++ +D+R + EI +++GGI ++V Sbjct: 187 FLPDTTIIQTLDYNFKTLAQRFREMAYLNKGLRFKFVDER--DGNEINFYFEGGIRSYVR 244 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K L + P ++ + D + +++A+++ + + ++V F N I DGG H++G R Sbjct: 245 HLNKDKNVLHKHPFYVERTIDEVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFR 304 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 SALTR I +Y K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS Sbjct: 305 SALTRVINAYARSKGFLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPSAT 364 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V + D SAWLEE+P EA+ IV+K + A+ R A ++ R+ T RK ++ SLPGK Sbjct: 365 GAVNTVFGDAFSAWLEENPQEARRIVEKCISAARTRIAVQKVRE-TARKSAMEGFSLPGK 423 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS+ +P ++ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE++R DKMLS+ E Sbjct: 424 LADCSDTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNE 483 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + LITA+G G+G D FD +KLRYH+II+M DADVDG+HIRTLLLTFFFR M +I NG Sbjct: 484 VKALITAIGAGVG-DQFDPSKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGH 542 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LY+ +PPLY I GK+ +YV + + YL S +E +K V+++ ++ Sbjct: 543 LYLAQPPLYRIVHGKTEKYVFTDTERDQYLATLSSAER------NKAVVTRYKGLGEMNA 596 Query: 594 ALKIDKLIKDFYPNHDKTFIEQA 616 A + + + +E A Sbjct: 597 AQLWETTMNPLNRLLLQVTLEDA 619 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 7/206 (3%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + I + S Sbjct: 451 QGRDRRYQAIL---PLRGKILNVEKSRLDKMLSNNEVKALITAIGAGVGDQFDPSKLRYH 507 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 ++ V + F F + I + + + ++ + + Sbjct: 508 RIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGHLYLAQPPLYRIVHGKTEKYVFTDTE 567 Query: 722 LLDTI--FSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + S + + RYKGLGEMNA+QLWETT+NP R LL+V + DA QAD+ F+ Sbjct: 568 RDQYLATLSSAERNKAVVTRYKGLGEMNAAQLWETTMNPLNRLLLQVTLEDAQQADETFT 627 Query: 779 RLMGDEVEPRREFIQENSLPS-ALDI 803 LMGD V PR+ FIQ ++L LDI Sbjct: 628 MLMGDLVPPRKRFIQTHALEVRNLDI 653 >gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5] gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5] Length = 634 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 295/620 (47%), Positives = 417/620 (67%), Gaps = 16/620 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD + IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE++ G D I Sbjct: 1 MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGICDHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + ++ D S TV DNGRGIP + + S EV+MT LHAGGKF YKVSGGLHGVG Sbjct: 60 EIIVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALSS + +++KR+GNIY+ + G+ + + G + +D GT VTFLP +IF+ Sbjct: 120 VSVVNALSSKVVVQVKRDGNIYQQEYHRGVPQYDIKIIGDS-DDHGTTVTFLPDPEIFTE 178 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++Y TL R+REL+FLN + ++L D+R+ Y+GGI +V +L+ K+ L Sbjct: 179 TTVYDYTTLLTRIRELAFLNKGIALTLTDERTG--ASDYFKYEGGIIEYVKFLNEKKEAL 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI ++GSRDNI +++++++ND Y EN+ F NNI +GGTH SG +SALTR I Y Sbjct: 237 HEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES + Sbjct: 297 ARKTGLIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEK 356 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L+E+P ++ I++K L AS R+AAR+AR++TRRK L++++LPGKLADCS +D Sbjct: 357 LQEFLQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDAS 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LS+ EI +ITALGT Sbjct: 417 ISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGT 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M L+ G++YI +PPL+ Sbjct: 477 GI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFK 535 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I R K ++Y E ++ + + +I G ++ L + + Sbjct: 536 IERNKVIRYAGSERERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------ETTMD 586 Query: 603 DFYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 587 PESRTMLQVTIEDAILADTL 606 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S ++ Sbjct: 438 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 495 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + K + + I + + N + I Sbjct: 496 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNKVIRYAGSERERDEII 555 Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G I++QRYKGLGEMNA QLWETT++P++R++L+V I DA AD LF LMGD V Sbjct: 556 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 615 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FIQE++ LD+ Sbjct: 616 EPRRDFIQEHAKSVRNLDV 634 >gi|18308988|ref|NP_560922.1| DNA gyrase subunit B [Clostridium perfringens str. 13] gi|18143663|dbj|BAB79712.1| DNA gyrase subunit B [Clostridium perfringens str. 13] Length = 638 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 295/619 (47%), Positives = 420/619 (67%), Gaps = 11/619 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +YDA IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 3 EQNNQNYDASQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCKN 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV D+GRG+P +H + G EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 IKVYIHKDNSVTVVDDGRGMPVGIHPKMGKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ + R+G +++ S+ G + L G A +GT+V F P +IF Sbjct: 122 GASVVNALSELCEVIVTRDGYVWKQSYKRGAVLTGLERIGEAE-GSGTKVHFKPDHEIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++++ L RLREL+FLN + I+LID+R E +E Y+GGI++FVSYL+R+K+ L Sbjct: 181 ETEYDFEILSQRLRELAFLNKGINITLIDEREDEVKEEVYHYEGGIKSFVSYLNRNKEVL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D I+++++++++DG++EN+ F NNI +GGTHL+G ++ALTR + Y Sbjct: 241 HDEPIYVEGLKDGIAVEVSLQYHDGFNENIFTFANNIDTVEGGTHLAGFKTALTRVMNDY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVRS V+S +G Sbjct: 301 GRRFGHLKESDKNLSGDDIREGLTAVVSVKISDPQFEGQTKTKLGNSEVRSAVDSISGEG 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P KII++K L AS R+AARRAR+LT RK VL+ +SLPGKLADCS +DPK Sbjct: 361 ISTFLEENPEVGKIIIEKALLASRAREAARRARELT-RKSVLERSSLPGKLADCSSKDPK 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L S I +++TA+G Sbjct: 420 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILGSDTIRSMVTAIGA 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY Sbjct: 480 GIG-PEFDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRDLVEQGHVYIAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I++GK +Y + + ++ + + KG+ ++ + + Sbjct: 539 ISKGKQERYAYSDAAADEIIEEFGGKDSSVNVQRYKGL-------GEMNAGQLWETTMDP 591 Query: 604 FYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 592 ESRILLRADIEDAMVADEI 610 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISM 736 + +F +Y R + L I G + + + D I G+ +++ Sbjct: 511 LLLTFFYRYMRDLVEQGHVYIAQPPLYKISKGKQERYAYSDAAADEIIEEFGGKDSSVNV 570 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P++R LLR I DA AD++F+ LMGD+VEPRREFIQ+N+ Sbjct: 571 QRYKGLGEMNAGQLWETTMDPESRILLRADIEDAMVADEIFTILMGDKVEPRREFIQKNA 630 Query: 797 LPS-ALDI 803 LDI Sbjct: 631 KNVSNLDI 638 >gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396] gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus vestibularis ATCC 49124] gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396] gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus vestibularis ATCC 49124] Length = 650 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 278/628 (44%), Positives = 401/628 (63%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D ++N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIKVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ + G+I+ + G++ L V G GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETE-KHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF F++ L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLEQEKHYHYEGGITSYVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y++ +K + PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ GDD REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ LS +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGSE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + + ++ E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGANQEEKLRVALENYSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 44/74 (59%), Positives = 59/74 (79%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD+VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|295094327|emb|CBK83418.1| DNA gyrase subunit B [Coprococcus sp. ART55/1] Length = 639 Score = 581 bits (1498), Expect = e-163, Method: Composition-based stats. Identities = 294/587 (50%), Positives = 401/587 (68%), Gaps = 4/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N +Y A+ IQ+L+GL+AV+KRP MYIG T +GLHH++YE++DN++DE+L GY I Sbjct: 1 MENDNYGAEQIQVLEGLEAVRKRPGMYIGSTSS-TGLHHLVYEIVDNSVDEALAGYCTHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N D S TV D+GRGIP +HK++GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 60 QVYINEDNSITVVDDGRGIPVGIHKKQGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183 SVVNALS+WL++ I R+G +Y+ + G + L V G A +GT+VTFLP IF Sbjct: 120 ASVVNALSTWLEVEITRDGKVYKQRYEKGKVMYKLQVIGEAPEGVSGTKVTFLPDHTIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++YD L++RLRE++FL ++ISL DKR + + Y+GGI+ FV+YL+RH+ PL Sbjct: 180 DNIYDYDILRNRLREMAFLTKGLKISLTDKRLIPEKVRSFHYEGGIKEFVTYLNRHRDPL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I +G RD IS+++A++ ND Y+E+ F NNI +GGTHL+G +SA+T+ Y Sbjct: 240 YNEVIYCEGVRDGISVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAITKVFNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ ++ GDD REG +++SIK+ DP+F QTK+KL +SE R VES V + Sbjct: 300 ARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVESVVTEQ 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +LE++P AKIIV K A R AAR+ARD+ R+ + D +LPGKLADCS++DPK Sbjct: 360 LTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADCSDKDPK 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++L ++EI +ITA GT Sbjct: 420 NCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIKAMITAFGT 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI ++ F+I KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI G +Y+ +PPLY Sbjct: 480 GIHEN-FNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + K + Y ++ L L + G + L Sbjct: 539 LEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMDAEQLWE 585 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 31/247 (12%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + + + I + D + +E+A I + E + Sbjct: 412 DCSDKDPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARIDRILGNEEIK 471 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + N + K I++ L + + F Sbjct: 472 AMITAFGTGIHENFNIEKLRYNKI---------IIMTDADVDGAHIATLLLTFFYRFMPD 522 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746 R + + L + K+ L++I + + +QRYKGLGEM+ Sbjct: 523 LIRKGHVYLAQ---PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMD 579 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSL 797 A QLWETT++P+ R LLRV A D F+ LMGD+VEPRREFI+ N+ Sbjct: 580 AEQLWETTMDPEKRILLRV-------AIDDDDESEIDMTFNVLMGDKVEPRREFIETNAK 632 Query: 798 PS-ALDI 803 LDI Sbjct: 633 YVKNLDI 639 >gi|148654235|ref|YP_001274440.1| DNA gyrase subunit B [Roseiflexus sp. RS-1] gi|148566345|gb|ABQ88490.1| DNA gyrase subunit B [Roseiflexus sp. RS-1] Length = 645 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 406/623 (65%), Gaps = 19/623 (3%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+ ++ + YD + IQ+L+G++AV++RP MYIG TD +GLH M+ EV+DN++DE Sbjct: 1 MTTEPLQPVEATGYDENQIQVLEGMEAVRRRPGMYIGPTD-VNGLHTMVREVVDNSVDEV 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 + G A + VT++ DGS TV+D+G GIPT H + G+S +V+MT LHAGGKF+ KSYKV Sbjct: 60 MAGRATTVEVTIHRDGSVTVADDGYGIPTGPHPKLGVSTLQVVMTVLHAGGKFDNKSYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIK--REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 S GLHGVGVS VNALS+++++ + R+G Y + G+ + G GT Sbjct: 120 SSGLHGVGVSAVNALSAYMRVDVHNARDGMHYFQEYRCGVPQCEVQKVGPTT-RRGTITR 178 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 FLP + I D+N+ TL R RE+++LN ++ +D+R + E+ +++GGI ++V Sbjct: 179 FLPDTTIIQTLDYNFKTLAQRFREMAYLNKGLRFKFVDER--DGNEVNFYFEGGIRSYVR 236 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH-ENVLCFTNNIPQKDGGTHLSGLR 293 +L++ + L + P ++ D++ +++A+++ + + ++V F N I DGG H++G R Sbjct: 237 HLNKDRNVLHKQPFYVERIVDDVMVEVALQYTESFDTDSVYAFANGINNTDGGAHVAGFR 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 SALTR I +Y K+++ ++ GDD REG T+V+S+K+ DP+FSSQTKEKLVS Sbjct: 297 SALTRVINAYARSKGLLKENEGNLTGDDVREGLTAVISVKLRDPQFSSQTKEKLVSPAAS 356 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V + D SAWLEE+P EA+ I++K + A+ R A ++ R+ T RK ++ SLPGK Sbjct: 357 GAVNTVFGDAFSAWLEENPQEARRIIEKCIAAARTRIAVQKVRE-TARKSAMEGFSLPGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS+ +P ++ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE++R DKMLS+ E Sbjct: 416 LADCSDTNPARTELFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKSRLDKMLSNNE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + LITA+G G+G D FD KLRYH+II+M DADVDG+HIRTLLLTFFFR M +I NG Sbjct: 476 VKALITAIGAGVG-DQFDPAKLRYHRIILMCDADVDGSHIRTLLLTFFFRYMRQIITNGH 534 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LY+ +PPLY I GK+ +YV + + YL S SE +K I++ ++ Sbjct: 535 LYLAQPPLYRIVHGKTEKYVFTDAERDQYLATLSSSER------NKATITRYKGLGEMNA 588 Query: 594 ALKIDKLIKDFYPNHDKTFIEQA 616 A + + + +E A Sbjct: 589 AQLWETTMNPLNRLLLQVTLEDA 611 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 4/137 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIF 727 V + F F + I + + + ++ + + L T+ Sbjct: 509 VDGSHIRTLLLTFFFRYMRQIITNGHLYLAQPPLYRIVHGKTEKYVFTDAERDQYLATLS 568 Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S R ++ RYKGLGEMNA+QLWETT+NP R LL+V + DA QAD+ F+ LMGD V P Sbjct: 569 SSERNKATITRYKGLGEMNAAQLWETTMNPLNRLLLQVTLEDAQQADETFTMLMGDLVPP 628 Query: 788 RREFIQENSLPS-ALDI 803 R+ FIQ ++L LDI Sbjct: 629 RKRFIQTHALEVRNLDI 645 >gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus equinus ATCC 9812] gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus equinus ATCC 9812] Length = 650 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 275/576 (47%), Positives = 387/576 (67%), Gaps = 9/576 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + R+G I+ + G + + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVYRDGKIHYQEYRRGHVVDDLKVIGDT-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDGEIFTETIVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEQHYHYEGGISSYVQ 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K + +PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 FINENKDVIFDTPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ GDD REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDVTMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVTKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 YI +PP+YG+ G ++ + ++ + ++ Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQESELQAAIER 573 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR S+QRYKGLGEM+ QLW TT++P+ R + RV + DA++AD +F LMGD+VEP Sbjct: 575 SNGRSKPSVQRYKGLGEMDDHQLWATTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEP 634 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LDI Sbjct: 635 RREFIEENAVYSTLDI 650 >gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus cristatus ATCC 51100] gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus cristatus ATCC 51100] Length = 649 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 278/627 (44%), Positives = 410/627 (65%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGQVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + ++ + +L SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGANQEEELQAALEH--YSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + + I G + + L+ +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 547 KVGSEVKEYIQPGANQE-EELQAALEH-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRR+FI++N++ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRRDFIEKNAVYSTLDV 649 >gi|312864604|ref|ZP_07724835.1| DNA gyrase, B subunit [Streptococcus downei F0415] gi|311099731|gb|EFQ57944.1| DNA gyrase, B subunit [Streptococcus downei F0415] Length = 650 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 280/628 (44%), Positives = 404/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNREDLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIEVFIEEDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L++++ + G I+ + G++ L V G + TGT V F Sbjct: 120 VSGGLHGVGSSVVNALSTSLEVKVHKNGKIHFQEYKRGLVVADLKVIGDT-DKTGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR + + Y+GGI ++V Sbjct: 179 TPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISISDKREGKEQSQVYHYEGGIVSYVD 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ +K+ L ++PI G D IS+++AM++ YHENVL F NNI +GGTH G R+ Sbjct: 239 YLNENKEVLFENPIYTDGEMDGISVEVAMQYTGTYHENVLSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ G+D REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLSGEDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L++ EI Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANDEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RY K++IMTDADVDG+HIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGSHIRTLLLTLFYRYMRPVVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + D + E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEVKEYI--QPGADQETKLQEALERYTQGRSKPSVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWKTTMDPEHRLMARVSVDDAAEADKI 623 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 105/270 (38%), Gaps = 15/270 (5%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593 I +TR KS + + + S+ DS G +K+ Sbjct: 394 IAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I I + + I +F SK + I ++ Sbjct: 454 ILPIRGKILNVEKASMDKILANDEIRSLFTAMGTGFGAEFDVSKARYQKLVIMTDADVDG 513 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 L R R V E G Y + + I G Sbjct: 514 SHIRTLLLTLFYRYMRPVVE-----------AGYVYIAQPPIYGVKVGSEVKEYIQPGAD 562 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L+ ++ GR S+QRYKGLGEM+ QLW+TT++P+ R + RV + DA++A Sbjct: 563 QETK-LQEALER-YTQGRSKPSVQRYKGLGEMDDHQLWKTTMDPEHRLMARVSVDDAAEA 620 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D +F LMGD+V PRREFI+EN++ S LDI Sbjct: 621 DKIFDMLMGDQVGPRREFIEENAVYSTLDI 650 >gi|163814983|ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759] gi|158449666|gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC 27759] Length = 639 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 296/587 (50%), Positives = 400/587 (68%), Gaps = 4/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N +Y A+ IQ+L+GL+AV+KRP MYIG T +GLHH++YE++DN++DE+L GY I Sbjct: 1 MENDNYGAEQIQVLEGLEAVRKRPGMYIGSTSS-TGLHHLVYEIVDNSVDEALAGYCTHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N D S TV D+GRGIP +HK++GI A EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 60 QVYINEDNSITVVDDGRGIPVGIHKKQGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183 SVVNALS+WL++ I R G IY+ + G + L V G A +GT+VTFLP IF Sbjct: 120 ASVVNALSTWLEVEITRNGKIYKQRYEKGKVMYKLQVIGDAPEGVSGTKVTFLPDHTIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++YD L++RLRE++FL ++ISL DKR + + Y+GGI+ FVSYL+RH+ PL Sbjct: 180 DNVYDYDILRNRLREMAFLTKGLKISLTDKRITPEKVRSFHYEGGIKEFVSYLNRHRDPL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I +G RD IS+++A++ ND Y+E+ F NNI +GGTHL+G +SA+T+ Y Sbjct: 240 YNEVIYCEGMRDGISVEVALQHNDSYNESTYSFVNNINTPEGGTHLTGFKSAITKVFNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ ++ GDD REG +++SIK+ DP+F QTK+KL +SE R VES V + Sbjct: 300 ARKNNIIKEKDDNLSGDDLREGLAAIVSIKISDPQFEGQTKQKLGNSEARPAVESVVTEQ 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +LE++P AKIIV K A R AAR+ARD+ R+ + D +LPGKLADCS++DPK Sbjct: 360 LTYYLEQNPQIAKIIVNKAAVAQRARIAARKARDVARKANLSDNMALPGKLADCSDKDPK 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+++VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++L ++EI +ITA GT Sbjct: 420 NCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIKAMITAFGT 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI ++ F+I KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI G +Y+ +PPLY Sbjct: 480 GIHEN-FNIEKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYK 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + K + Y ++ L L + G + L Sbjct: 539 LEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMDAEQLWE 585 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 31/247 (12%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + + + I + D + +E+A I + E + Sbjct: 412 DCSDKDPKNCEIYIVEGDSAGGSAKTARSRSTQAILPLRGKILNVEKARIDRILGNEEIK 471 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + N + K I++ L + + F Sbjct: 472 AMITAFGTGIHENFNIEKLRYNKI---------IIMTDADVDGAHIATLLLTFFYRFMPD 522 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMN 746 R + + L + K+ L++I + + +QRYKGLGEM+ Sbjct: 523 LIRKGHVYLAQ---PPLYKLEKNKKVWYAYSDDELNSILDEVGRDQNNKIQRYKGLGEMD 579 Query: 747 ASQLWETTLNPDTRSLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSL 797 A QLWETT++P+ R LLRV A D F+ LMGD+VEPRREFI+ N+ Sbjct: 580 AEQLWETTMDPERRILLRV-------AIDDDDESEIDMTFNVLMGDKVEPRREFIETNAK 632 Query: 798 PS-ALDI 803 LD+ Sbjct: 633 YVKNLDV 639 >gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr. CH1] gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 649 Score = 581 bits (1497), Expect = e-163, Method: Composition-based stats. Identities = 278/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQSQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +++ + G I+ + G + L V G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKNGQIHFQEYTRGQVVADLKVIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN + IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRIQELAFLNRGLSISITDKRDGMEQSKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K+ + +PI G ++I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKEVIFDNPIYTDGEMEDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPVETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FDI+K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAD-FDISKCRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGADQEIKLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMDPEHRLMARVSVDDAAEADKI 622 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + + I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 547 KVGSEVKEYIQPGADQEIK-LQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 649 >gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312] gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312] Length = 655 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 278/638 (43%), Positives = 402/638 (63%), Gaps = 19/638 (2%) Query: 1 MSD----NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ N ++ Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+ Sbjct: 1 MSEDKRSNKISNEYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+ D I + L DGS +SDNGRGIPTD+H G SA E ++T LHAGGKF YKV Sbjct: 60 LAGHCDHIEIVLQSDGSALISDNGRGIPTDIHPRTGKSALETVLTVLHAGGKFGSGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVT 174 SGGLHGVG+SVVNALS W+ + + R+G+ + F G+ N L GT + Sbjct: 120 SGGLHGVGISVVNALSEWVNVTVYRDGSEFNQRFEKGVSQNVLQSKKQTKKPFKKGTTIC 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS----PEPREITMFYKGGI 229 F P IFS +F Y L RLREL++LN V+I D+R+ +E Y+GGI Sbjct: 180 FKPDKTIFSGGIEFEYALLSSRLRELAYLNGGVKIVFRDERNKLSDGSFKEEIYLYQGGI 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTH 288 + +V Y++ K+ + I + ++N+ ++ A++W D Y +N+L F NNI DGGTH Sbjct: 240 KEYVQYMNAEKEAIHPDIIYVDSQKENVYVEAALQWCSDVYSDNILGFANNIRTIDGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 + GL++ LTR + +K K ++++ G++ REG T VLS+K+PDP F QTK KL Sbjct: 300 IEGLKTVLTRTFNNLAKKRGKRKDIEKNLAGENIREGLTVVLSVKVPDPEFEGQTKTKLG 359 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++EVR +V+S + + L+ ++E +P ++++K + + +AARRAR+L RRK VL+ + Sbjct: 360 NTEVRGIVDSLIGEALTKFMEFNPGILDLVLEKAIQSFNAAEAARRARELVRRKSVLESS 419 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +LPGKLADCS RDP +SE+++VEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ K+ Sbjct: 420 TLPGKLADCSSRDPAESEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIEKTDDTKI 479 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 + EI +LITALG GI + FD++ LRYH+++IMTDADVDGAHIRTLLLTFF+R L Sbjct: 480 YKNTEIQSLITALGLGIKGEEFDVSSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQREL 539 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 + G++YI PPLY + RGK+ +Y +E L+D + + + G + L Sbjct: 540 VEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENANYNIQRFKGLGEMMPKQL 599 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 + ++ + + +E I + + Sbjct: 600 WDT-----TMNPQTRMMKRVEIEDALEADRIFNILMGD 632 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 6/129 (4%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQ 737 + +F +Y+R + L + G K L DTI S G ++Q Sbjct: 527 LLLTFFYRYQRELVEKGYIYIACPPLYKVERGKNHKYCYNENQLKDTIGSFGENANYNIQ 586 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM QLW+TT+NP TR + RV+I DA +AD +F+ LMGD+V PRREFI+ +S Sbjct: 587 RFKGLGEMMPKQLWDTTMNPQTRMMKRVEIEDALEADRIFNILMGDKVAPRREFIETHSS 646 Query: 798 P---SALDI 803 + LDI Sbjct: 647 KLDMATLDI 655 >gi|111020663|ref|YP_703635.1| DNA gyrase subunit B [Rhodococcus jostii RHA1] gi|110820193|gb|ABG95477.1| DNA topoisomerase subunit B [Rhodococcus jostii RHA1] Length = 696 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 266/609 (43%), Positives = 372/609 (61%), Gaps = 37/609 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A Sbjct: 24 KSTSSKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 82 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TL DG V D+GRGIP +H G+ EV++T+LHAGGKF+ SY VSGGLHG Sbjct: 83 KVEITLLEDGGVRVVDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 141 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS+ L + IKR+G + ++ + L V G A +TGT VTF +IF Sbjct: 142 VGISVVNALSTRLDVDIKRDGFQWHQTYTDSKP-GEL-VKGEATKETGTTVTFWADPNIF 199 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 ++++T+ RL+E++FLN + I+L D+R Sbjct: 200 ETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDESAEA 259 Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 + + Y GG+E +V +++R K+P+ S + +++AM+WN GY Sbjct: 260 EAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNSGYS 319 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V F N I +GGTH G RSALT + Y K+ + GDD REG +++ Sbjct: 320 ESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAII 379 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++EVRS V+ N+ LS W E +P +AK IV K + ++ R Sbjct: 380 SVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARV 439 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+L RRK D+ LPGKLADC DP KSE+++VEGDSAGGSAK GR QAI Sbjct: 440 AARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAI 499 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPLRGKI+NVE+AR D++L + E+ ++ITA GTGI D FDI KLRYHKI++M DADVDG Sbjct: 500 LPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDG 558 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M L+ +G +Y+ +PPLY + +S + D L+ L Sbjct: 559 QHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDVLVKAGLES 618 Query: 571 EIELFCDSK 579 ++ D Sbjct: 619 GKKINKDDG 627 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ G+K I+ +QRYKGLGEMNA +LWETT++P R L V + DA+ AD+LF Sbjct: 611 LVKAGLESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADELF 669 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 670 SVLMGEDVEARRSFITRNAKDVRFLDV 696 >gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126] gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126] Length = 650 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 279/628 (44%), Positives = 400/628 (63%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D ++N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ + G+I+ + G++ L V G GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVADLAVIGETE-KHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF F++ L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLKQEKHYHYEGGITSYVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y++ +K + PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ GDD REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ LS +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + D + E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGADQEDKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 44/74 (59%), Positives = 59/74 (79%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD+VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|256374166|ref|YP_003097826.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827] gi|255918469|gb|ACU33980.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827] Length = 657 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 265/599 (44%), Positives = 377/599 (62%), Gaps = 20/599 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I EV+DN++DE++ GY Sbjct: 1 MA--AQKKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIQEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL +G V D+GRGIP DLH EG EV++T+LHAGGKF+ SY VSGGL Sbjct: 58 ASKVVVTLLANGGVRVVDDGRGIPVDLHPVEGKPTLEVVLTKLHAGGKFDSDSYAVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ + + +KR+G + F + L G ++TGT +TF Sbjct: 118 HGVGISVVNALSTAVDVEVKRQGFTWNQRFEASKPAHELQR-GVPTSETGTTITFWADPT 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------RSPEPREITMFYK 226 IF D+N +T+ RL+E++FLN + I L D+ + RE Y Sbjct: 177 IFETTDYNIETISRRLQEMAFLNKGLSIVLRDERVAEEGAEEADAEGHVAKVRERVFHYP 236 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GG+E FV +L+ ++ + Q + + D++ +++AM+WN GY +V F N I +GG Sbjct: 237 GGLEDFVRHLNHTREAVHQKVVSFEAKGDDLEVEVAMQWNTGYTPSVYTFANTINTHEGG 296 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALTR + Y K+ ++ GDD REG +++S+K+ +P+F QTK K Sbjct: 297 THEEGFRAALTRVVNEYARDKKLIKEKDANLTGDDIREGLAAIISVKLKEPQFEGQTKTK 356 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +SE +S V+ N+ L+ W E HP EAK I+ K + +S R AAR+AR+L RRKG LD Sbjct: 357 LGNSEAKSFVQKSTNEHLADWFERHPNEAKTIITKAVSSSQARIAARKARELVRRKGALD 416 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 I LPGKL DC +P++ E+++VEGDSAGGSAK+GR QAILP+RGKI+NVE+AR D Sbjct: 417 IGGLPGKLKDCRSSNPEECEVYIVEGDSAGGSAKEGRDSMYQAILPIRGKIINVEKARID 476 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L + E+ ++ITA+GTGI D FD++KLRYHK+++M DADVDG HIRTLLLT FR M Sbjct: 477 RVLKNTEVQSIITAMGTGI-HDEFDVSKLRYHKVVLMADADVDGQHIRTLLLTLLFRFMR 535 Query: 527 SLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 L+ +G +Y+ +PPLY I ++ +Y + + + + + D+ Sbjct: 536 PLLEHGHVYLAQPPLYKIKWLRAEPEYAYSDRERDGLIEQGLAAGKKIGKDDNIQRYKG 594 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 4/86 (4%) Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L++ + G+K ++QRYKGLGEMNA +LWETT++P R LL+V + DA+ AD+LFS Sbjct: 572 LIEQGLAAGKKIGKDDNIQRYKGLGEMNAEELWETTMDPANRVLLQVTMDDAAAADELFS 631 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMG++VE RR FI N+ LD+ Sbjct: 632 VLMGEDVEARRSFITRNAKGVRFLDV 657 >gi|219851686|ref|YP_002466118.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c] gi|219545945|gb|ACL16395.1| DNA gyrase, B subunit [Methanosphaerula palustris E1-9c] Length = 665 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 290/651 (44%), Positives = 400/651 (61%), Gaps = 43/651 (6%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ SYDA I +L+GL V++RP+MYIG TD GLHH++YEV+DNA+DE+L G+ Sbjct: 1 MTE-----SYDASHITVLEGLQPVRERPAMYIGSTD-TRGLHHLVYEVVDNAVDEALAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D+I++T+N DGSCTV DNGRGIP D ++ G SA E ++T LHAGGKF++ +Y+VSGGL Sbjct: 55 CDLISITINRDGSCTVDDNGRGIPVDKMQKNGKSALETVLTILHAGGKFDKNTYQVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165 HGVGVSVVNALS L + R+GN Y M F G + +PL V Sbjct: 115 HGVGVSVVNALSVSLVADVFRDGNRYRMEFAQGKVVSPLSVHKETLSELLERYRRRYRSE 174 Query: 166 ----------------GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 +GT +TF P IF F+YD L HRLRE++FLN + I Sbjct: 175 PPREVETKEALFADEGAKLSGTIITFQPDDSIFETVTFDYDVLVHRLREMAFLNRGITIR 234 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI--RIQGSRDNISIDLAMRWND 267 + D RS + Y GG+ FV YL ++ L I + + + +++A+++ Sbjct: 235 ITDLRSGDK--DEFHYDGGLREFVQYLIDGREVLHPDVIDLSRKDEENKLEVEVALQYTQ 292 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 Y E V F N++ ++GGTHL G RSA+TR I + K+ K + ++ G+D REG T Sbjct: 293 SYTETVYTFVNSVNTREGGTHLEGFRSAITRAINNSARKANLIKNNTLTLRGEDVREGLT 352 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+SIK+ +P+F QTK +L +S VR +V+S V LS + EE+P I +K A+ Sbjct: 353 AVISIKLANPQFEGQTKMRLGNSNVRGIVDSLVYQSLSEYFEENPKSIAAIFEKATVAAQ 412 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R+AAR AR+L RRK L+ + LPGKLADCSERDP KSE+++VEGDSAGGSAKQGR+R Sbjct: 413 AREAARNARELARRKSTLESSGLPGKLADCSERDPAKSEVYIVEGDSAGGSAKQGRNRRF 472 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPLRGKILNVE+A KM+ S EI LI+A+G GIG D D N+ RYH I++MTDAD Sbjct: 473 QAILPLRGKILNVEKATQHKMIKSVEIQVLISAIGAGIG-DRMDANRARYHHIVLMTDAD 531 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHI+TLLLTFF+R MP LI G++YI +PPL+ I +GK ++YV EE ++ Sbjct: 532 VDGAHIQTLLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEFG 591 Query: 568 LSEEIELFCDSKGVISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAV 617 G ++ + L ++ ++ K I+ + E+ + Sbjct: 592 DKGVTVQRYKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGYANEIFEKLM 642 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 3/126 (2%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQR 738 + +F +Y R L I G +++ + I + G KG+++QR Sbjct: 540 LLLTFFYRYMPELIERGYVYIAQPPLFRIAKGKQVRYVYREEEMQQISAEFGDKGVTVQR 599 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLWETT+NPDTR L +++I DA A+++F +LMG++V R+ FI ++ Sbjct: 600 YKGLGEMNADQLWETTMNPDTRVLKQIRIEDAGYANEIFEKLMGEDVSARKNFILRHAKE 659 Query: 799 S-ALDI 803 LDI Sbjct: 660 VTNLDI 665 >gi|254520691|ref|ZP_05132747.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA] gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA] Length = 637 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 302/588 (51%), Positives = 406/588 (69%), Gaps = 7/588 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N SYD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L G+ Sbjct: 3 EKSNQSYDESQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGFCTE 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I+V +N D S TV DNGRG+PT +H + G S EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 ISVAINEDNSITVIDNGRGMPTGIHPKMGKSTVEVIMTVLHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS W ++ + REG+I++ + G L G + GT+V+F P ++IF Sbjct: 122 GASVVNALSEWCEVTVSREGDIWQQKYSRGNAVTDLSKIGKTE-EHGTKVSFKPDTEIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++++D L +RLREL+FLN ++I L D R E + Y+GGI+ FVSYL R+K+ L Sbjct: 181 ETEYDFDILANRLRELAFLNKGIKIILSDAR-EEGKTEVYHYEGGIKEFVSYLSRNKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 Q PI I+G +D I +++++++ND Y EN+ F NNI +GGTHLSG ++ALTR I Y Sbjct: 240 HQDPIYIEGEKDGIIVEISLQYNDSYTENLYSFANNIDTIEGGTHLSGFKTALTRVINDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K++ +++ GDD REG T+V+S+K+ +P+F QTK KL +SEVR VV+S V +G Sbjct: 300 GKKFNHLKENDKNLSGDDIREGLTAVVSVKISEPQFEGQTKTKLGNSEVRGVVDSIVGEG 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 +S +LEE+P KII+ K L A+ RDAAR+AR+LT RK VL+ +SLPGKLADCS +DP Sbjct: 360 VSIFLEENPGIGKIIIDKALMAARARDAARKARELT-RKSVLERSSLPGKLADCSSKDPL 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR+R QAILPLRGKILNVE+ R D++L++ I +++TA G Sbjct: 419 ECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKQRLDRILTADSIKSMVTAFGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FD KLRY++IIIMTDADVDGAHIRTLLLTFFFR M L+ G +YI +PPLY Sbjct: 479 GIG-DDFDEEKLRYNRIIIMTDADVDGAHIRTLLLTFFFRYMRGLLDGGHVYIAQPPLYQ 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589 + + K Y + LE L + G ++ N L + Sbjct: 538 VKKNKKEYYAYSDAELEKLLSEIGGKDNSTNIQRYKGLGEMNANQLWD 585 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + A + + + + + ++ V + Sbjct: 452 ILNVEKQRLDRILTADSIKSMVTAFGAGIGDDFDEEKLRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F F + + + + N + L + IG K ++QR Sbjct: 512 LTFFFRYMRGLLDGGHVYIAQPPLYQVKKNKKEYYAYSDAELEKLLSEIGGKDNSTNIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA+QLW+TT++P+ R LL+ + DA AD++F+ LMGD+VEPRREFIQ+N+ Sbjct: 572 YKGLGEMNANQLWDTTMDPEKRVLLKATVEDAIAADEIFTILMGDKVEPRREFIQKNAKK 631 Query: 799 S-ALDI 803 LD+ Sbjct: 632 VSNLDV 637 >gi|289642470|ref|ZP_06474615.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata] gi|289507729|gb|EFD28683.1| DNA gyrase, B subunit [Frankia symbiont of Datisca glomerata] Length = 644 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 291/583 (49%), Positives = 374/583 (64%), Gaps = 10/583 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D I VTL Sbjct: 2 AYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDTIGVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG VSDNGRGIP H E A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV Sbjct: 61 LADGGVRVSDNGRGIPVGEHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ L++ I+REG + + N PL G+ TGT VTF IF D+ Sbjct: 121 NALSTRLEVEIRREGFTWFQPYENTRPAAPLAK-GAPTRKTGTTVTFWADDTIFETTDYK 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 Y+TL RL+E++FLN + ISL D+R EP E+T Y GG+ FV +L+ K P+ ++ I Sbjct: 180 YETLSRRLQEMAFLNKGLTISLRDERPEEPLEVTYRYAGGLVDFVEHLNASKDPIHKTVI 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 + I +LAM+WN GY+E+V F N I +GGTH G R+ALT + +Y + Sbjct: 240 SLDSKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNAYAKDQN 299 Query: 309 GSKKDKRSVI-------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 K K + GDD REG T+++S+K+ P+F QTK KL +SE + ++ Sbjct: 300 LLKPPKSNGKNADERLAGDDIREGLTAIISVKLAQPQFEGQTKTKLGNSEAKRFIQEMCY 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 L WLE + +EA+ IV K LDA R AAR ARDLTRRKG+L LPGKLADC D Sbjct: 360 SALKDWLEANRVEARAIVSKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLADCQYTD 419 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++ EL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + E+ LI AL Sbjct: 420 PERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQAL 479 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GI D FD +KLRYHKI++M DADVDG HIRTLLLT FR M L+ G++++ +PPL Sbjct: 480 GCGI-HDDFDASKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGYVFLAQPPL 538 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 Y I G+ + D LI + +L D+ Sbjct: 539 YKIKWGREDWQYAYSDRERDGLIEHGIEAGRKLPKDAIQRFKG 581 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 3/85 (3%) Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L++ GRK ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS Sbjct: 560 LIEHGIEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSV 619 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 LMG++V+ RR FIQ N+ LDI Sbjct: 620 LMGEDVDARRSFIQRNAKDVRFLDI 644 >gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11] gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11] gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000] Length = 651 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 280/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + ++G Y + G++ + L + G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVTVHKDGQKYFQEYHRGLVRDDLKIIGET-DLRGTTVHF 178 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233 +P +IF+ +F++D L R+REL+FLN ++ISL DKR E E+ Y+GGI+++V Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YL+ +K + + I +G D I++++AM++ D YH V+ F NNI +GGTH G R Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y +++ K+++ ++ GDD REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + L+ ++ E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGK Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++E Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G+ Sbjct: 479 IRSLFTAMGTGFGGD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PP+YGI G + ++ + ++L+ + K + + +DD Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + +E A + Sbjct: 596 HQLWETTMDPEHRLMARVSVEDAAEADKI 624 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%) Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 I G+ + L ++ GR ++QRYKGLGEM+ QLWETT++P+ R + RV Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVS 614 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + DA++AD +F LMGD VEPRREFI+ N+ S +D Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650 >gi|262341127|ref|YP_003283982.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272464|gb|ACY40372.1| DNA gyrase subunit B [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 642 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 262/595 (44%), Positives = 387/595 (65%), Gaps = 10/595 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + +Y ADSIQ L+G++ ++ RPSMYIGD G GLHH++YEV+DN++DE+L G+ Sbjct: 1 MSKHNTTKNYTADSIQSLEGIEHIRLRPSMYIGDV-GIRGLHHLVYEVIDNSVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ +G T+ DNGRGIP D+HK+EG SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 60 CNKIWVTIHKNGFITILDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+S VNALS L + I R IY+ ++ G + G GT++ +L Sbjct: 120 HGVGISCVNALSEKLIVTIYRNRKIYQQEYLKGKALYSVKCLGKTNMQ-GTKIHYLVDPS 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +NY+ + +RL+EL+FLN + + L D+R E + F K G++ +++ LD+++ Sbjct: 179 IFQTITYNYEIIVNRLKELAFLNKGLYLFLKDER--ENIKEHFFSKNGLKEYLTILDKNQ 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L ++ I I+G +DN +++AM++N + E + + NNI +GGTHLSG R ALTR + Sbjct: 237 ESLTKNVIFIEGEKDNTIVEVAMQYNTSFKEKIYSYVNNINTYEGGTHLSGFRRALTRTL 296 Query: 301 TSYVEKSFGSKKD-KRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y + K + GDD REG T+++S+++ +P+F QTK KL + EV +V+ Sbjct: 297 KKYTDGYGILSNKDKVELTGDDFREGITAIISVRVMEPQFEGQTKTKLSNHEVGGIVDKI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+++LEEHP + K I+ KV+ A+ R AAR+AR+ +++ ++ + LPGKLADCS Sbjct: 357 VGEMLNSYLEEHPSDRKKIIDKVILAAKARQAARKAREFIQKRNPINNSILPGKLADCSF 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +P+ E++LVEGDSAGG+AKQGR R QA+LPLRGKILNVE+A K+ ++EI + Sbjct: 417 NNPENCEIYLVEGDSAGGTAKQGRDRNFQAVLPLRGKILNVEKAMQYKIFENEEIKNIFA 476 Query: 480 ALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +LG I Q+ F++ KLRY+KIIIMTDAD+DG+HI TL+LT FFR M LI G +Y Sbjct: 477 SLGVSIETEEDQEIFNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIY 536 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 I PPLY I +G QY ++E E+ L + + G ++ L Sbjct: 537 IATPPLYLIRKGNHSQYAWNDEERENILNQLGGRKSVNIQRYKGLGEMNAEQLWE 591 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 10/191 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQEQFVLEG 679 + N E + + ++ N + E I N + +I + ++G Sbjct: 454 ILNVEKAMQYKIFENEEIKNIFASLGVSIETEEDQEIFNVKKLRYNKII--IMTDADIDG 511 Query: 680 S----SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRK 732 S I + +Y + + L LI G+ + + I + GRK Sbjct: 512 SHISTLILTLFFRYMKPLIEKGHIYIATPPLYLIRKGNHSQYAWNDEERENILNQLGGRK 571 Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 +++QRYKGLGEMNA QLWETT+NP R+L +V I + S+AD +FS LMGDEV PRR FI Sbjct: 572 SVNIQRYKGLGEMNAEQLWETTMNPKNRTLRKVNIENDSEADKIFSILMGDEVPPRRNFI 631 Query: 793 QENSLPSALDI 803 ++N++ + +D+ Sbjct: 632 EKNAIHAKIDV 642 >gi|218133091|ref|ZP_03461895.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC 43243] gi|217991964|gb|EEC57968.1| hypothetical protein BACPEC_00953 [Bacteroides pectinophilus ATCC 43243] Length = 640 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 254/621 (40%), Positives = 372/621 (59%), Gaps = 11/621 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YD SI IL+GL+AV+KRP MYIG G GL+H+IYE+ DNA+DE L G+ I Sbjct: 1 MAGNKYDESSISILEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIADNAVDEHLAGFCSEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVTLN DGS T++DNGRGIPT +H + GIS +V+ T LHAGGKF YK+SGGLHGVG Sbjct: 60 TVTLNADGSATIADNGRGIPTGIHPKAGISTVDVVFTMLHAGGKFGDGGYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ IKR+G ++ + G L TG+ +DTG+ +TFLP +IF Sbjct: 120 ASVVNALSVWLEVTIKRDGIVWHQRYEKGRRTGELTQTGTCRKHDTGSTITFLPDGEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR---EITMFYKGGIEAFVSYLDRHK 240 F + ++ RL E ++LN + I DKR E T + GI++++ L+ K Sbjct: 180 KTVFKAEAIKSRLHETAYLNPGLTIHFEDKRHIETPGDDIETFHEEDGIKSYIKDLNEGK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I + R+ I ++ A ++ + + ENVL F NNI ++GGTH++G +S T I Sbjct: 240 ECIH-DIIYFKKKREGIEVEAAFQFVNEFEENVLGFCNNIYTQEGGTHITGFKSKFTTII 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K + G D R G T+++++K P+PRF QTK KL + + VV Sbjct: 299 NQYARELGILKDKDANFTGLDVRNGMTAIIAVKHPEPRFEGQTKTKLDNPDAGKVVAEIT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + +++ K ++ ++ +R A +A+ K + GKLA+C R Sbjct: 359 GEELQLFFDKNLETLKSVIACAEKSAKIRKAEEKAKTNMLVKPKFSYDT-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P++ E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+IT+ Sbjct: 418 NPEECEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASIDKVLANAEIKTMITS 477 Query: 481 LGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + FDI++LRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI+ G +YI Sbjct: 478 FGCGFLEGYGNDFDISRLRYNKIIIMTDADVDGAHIDTLLLTFFYRFMPELINQGHVYIA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY I + QY+ D+++LE Y + + ++ + + ++ ++ + Sbjct: 538 TPPLYKAIPKKGEEQYIYDDKALEKYRKTHTGAFTLQRYKGLGEMDAQQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 I K ++ + Sbjct: 598 ILKQVEIEDARMATEVTSMLM 618 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 61/101 (60%), Gaps = 9/101 (8%) Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRS 761 ++ G++ I D RK ++QRYKGLGEM+A QLWETTLNP+TR Sbjct: 544 AIPKKGEEQYIYD-----DKALEKYRKTHTGAFTLQRYKGLGEMDAQQLWETTLNPETRI 598 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L +V+I DA A ++ S LMG +V PRREFI ++ + +D Sbjct: 599 LKQVEIEDARMATEVTSMLMGSDVAPRREFIYTHANEAEID 639 >gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2] gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2] Length = 642 Score = 580 bits (1496), Expect = e-163, Method: Composition-based stats. Identities = 285/591 (48%), Positives = 402/591 (68%), Gaps = 5/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + SY+A IQ+L+GL+AV+KRP MYIG T G GLHH+++E++DN+IDE+L G+ Sbjct: 3 MEEKGLQESYEASQIQVLEGLEAVRKRPGMYIGST-GARGLHHLVWEIVDNSIDEALAGH 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V++ D V DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGL Sbjct: 62 CTEIRVSIEPDNWIRVEDNGRGIPVGMQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS ++ + R+ + + F G + L V G + + TGT + F ++ Sbjct: 122 HGVGASVVNALSETTEVYVNRDEKRHYIKFERGAVTEELNVIGDSDH-TGTTIRFKADAE 180 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + +D L HRLREL++LN ++I + D+R E +E ++GGI+++V +L++ Sbjct: 181 IFKETTVYEFDILDHRLRELAYLNRGLKIVVKDEREGEEKEKIYHFEGGIKSYVEHLNKS 240 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K PL + I ++ RD I++++AM++N GY N+ F NNI +GGTH SG ++ALTR Sbjct: 241 KDPLHEEAIFVEAERDGITVEVAMQYNAGYAANIFSFANNINTHEGGTHESGFKTALTRV 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y K K+ ++ GDD REG T+++S+K PDP+F QTK KL ++EV ++V + Sbjct: 301 VNDYGRKKSMLKEQDLNLTGDDVREGLTAIISVKHPDPQFEGQTKTKLGNTEVSTIVNNL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++G +L E+P +K IV+K + AS R AA++AR+ TRRK VL+++SLPGKLADCS Sbjct: 361 FSNGFERFLLENPAVSKKIVEKGIMASHARMAAKKAREFTRRKSVLEVSSLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDPK SE+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 421 RDPKISEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILTNDEIRNIIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGIG++ F++ K RYHKI+IMTDADVDGAHIRTLLLTF FR M L+ G++YI +P Sbjct: 481 ALGTGIGEE-FNLEKARYHKIVIMTDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQP 539 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+ I +GK ++YV + L+ L N S + + G ++ L + Sbjct: 540 PLFQIKQGKHVEYVYTDAQLKTALENLSPTPKPNIQRYKGLGEMNATQLWD 590 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 4/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + ++ N + + + ++ +V Sbjct: 446 RHFQAIL--PLRGKILNVEKARLDRILTNDEIRNIITALGTGIGEEFNLEKARYHKIVIM 503 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F F + + I + + + L + Sbjct: 504 TDADVDGAHIRTLLLTFLFRYMRPLLEAGYIYIAQPPLFQIKQGKHVEYVYTDAQLKTAL 563 Query: 727 FSIG-RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 ++ ++QRYKGLGEMNA+QLW+TT++PD R+LL+V + DA AD+ F LMGDEV Sbjct: 564 ENLSPTPKPNIQRYKGLGEMNATQLWDTTMDPDVRTLLQVTLNDAMVADETFHILMGDEV 623 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR FI+EN+ LD+ Sbjct: 624 EPRRNFIEENAKYVKNLDV 642 >gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34] gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34] Length = 650 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEKDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + R G I+ + G + + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVAVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K+ + ++PI G D IS+++AM++ YHE V+ F NNI +GGTH G R+ Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + ++ + +++ SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I + S+GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LDI Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|203284344|ref|YP_002222084.1| DNA gyrase, subunit B [Borrelia duttonii Ly] gi|201083787|gb|ACH93378.1| DNA gyrase, subunit B [Borrelia duttonii Ly] Length = 639 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 278/584 (47%), Positives = 405/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YE++DN+IDE+L G+ D I V + Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEIVDNSIDEALAGFCDRIEVVI 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S V+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVGVSVV Sbjct: 66 NSDNSIMVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + REG +++ ++ GI + + V G + TGT+VTF S+IF ++ Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVGVSS-TTGTKVTFFADSEIFETLKYD 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ D+R E + + +++GGI+AFV Y+ + K + SP Sbjct: 185 FETLSRRLRELAFLNDKIRISIEDRRLGEEKFLEFYFEGGIKAFVDYITNNNKNIQSSPY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G +++ + + ++W +GY +N L F NNI K+GGTH++G +S L + ++ S Sbjct: 245 FIEGVCNDVIVSVGLKWTEGYSDNTLSFVNNINTKEGGTHVAGFKSGLLKAMSEAFRDSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V DGL + Sbjct: 305 ISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVYDGLLRII 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 E+ +E II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 NENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTSKNPAEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 425 IVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKA 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI N +YI PPLY I Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPPLYKIKHEN 543 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 + Y D+ E +L + + ++ G ++ L Sbjct: 544 KVHYFYDDFEKETFLGSIDVVKRNKVSLQRYKGLGEMNPTQLWE 587 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS---LLDTIFSIGRKGISMQ 737 F F + I + + + + L +I + R +S+Q Sbjct: 513 LTFFFRYMRELIDNKHVYIAMPPLYKIKHENKVHYFYDDFEKETFLGSIDVVKRNKVSLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + ++I DA QA+ +F LMGD+VEPRREFI++N+L Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632 Query: 798 P-SALDI 803 LD+ Sbjct: 633 DVVNLDV 639 >gi|302336536|ref|YP_003801743.1| DNA gyrase subunit B [Olsenella uli DSM 7084] gi|301320376|gb|ADK68863.1| DNA gyrase subunit B [Olsenella uli DSM 7084] Length = 667 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 282/592 (47%), Positives = 382/592 (64%), Gaps = 16/592 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SY A I++LKGL+AV+KRP MYIG T ++GLHH+++E++DN++DE++ G+ + Sbjct: 3 SKNEHSYGASEIKVLKGLEAVRKRPGMYIG-TTSKTGLHHLVWEIVDNSVDEAMAGFCNK 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV DNGRGIPT +H E EV++T LHAGGKF+ +YKVSGGLHGV Sbjct: 62 IQVTVHADNSVTVVDNGRGIPTAMHPVERKPTLEVVLTVLHAGGKFDNNAYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSDIF 182 G+SVVNALS L ++KR+G I E+ G + + G + N TGT VTF P IF Sbjct: 122 GISVVNALSKRLVAQVKRDGVINEIELSRGKVTKKMHKVGTCSPNVTGTTVTFWPDDQIF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK- 241 ++YDTL L+E +FLN V+I L D+R PR Y GGI FV +L+ K Sbjct: 182 ETMTYDYDTLHDHLQETAFLNKGVKIVLTDERELVPRVDEFCYAGGIIDFVKFLNEGKTV 241 Query: 242 -PLMQSPIRIQG-------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 PI I+G + ++++M+WN GY E V+ F N+I ++GG HL G R Sbjct: 242 LSGCSKPIYIEGTSDPAAPESNKGEVEVSMQWNSGYSEMVMSFANDIYTEEGGMHLEGFR 301 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT+ + Y K+ ++ GDD REG T+V+S+K+PDP+F QTK KL SS +R Sbjct: 302 TALTKTVNDYARNHKLLKERDSNLTGDDIREGMTAVISVKLPDPQFEGQTKAKLGSSYMR 361 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 ++ V+ GL+ +LEEHP +A+ + KK A+ R AA++AR TRRK +L+ A+LPGK Sbjct: 362 TLTNKIVSAGLAEYLEEHPNQAREMFKKAAQAAKGRLAAQKARQATRRKSILESAALPGK 421 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS RD +ELF+VEGDSAGGSAK GR R+ QAILPLRGKILNVER + SS+ Sbjct: 422 LADCSVRDASMTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSET 481 Query: 474 IGTLITALGTGI-----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 I +LITA+GTG+ FDI K RYHKIIIMTDADVDGAHIR LL+TFF++ M L Sbjct: 482 IQSLITAIGTGVTMSNGEGGDFDIAKARYHKIIIMTDADVDGAHIRILLMTFFYKYMRPL 541 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 I GF+Y PP++G+ GK + YV + ++ ++ Q EE + Sbjct: 542 IDAGFVYAACPPIFGVKVGKRIHYVYPDSETDENVLLQQAIEECVPRDEEGK 593 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 2/78 (2%) Query: 728 SIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 G+ + S+QRYKGLGEM+ QL +TT++P TR L R+ I DA++A+ SRLMG VE Sbjct: 590 EEGKQRKYSVQRYKGLGEMDPQQLADTTMDPKTRILQRISIDDAARAERAVSRLMGTSVE 649 Query: 787 PRREFIQENSLPSA-LDI 803 RR++I++++ + LDI Sbjct: 650 YRRDYIEQHAKDARFLDI 667 >gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 650 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEEDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + R G I+ + G + + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K+ + ++PI G D IS+++AM++ YHE V+ F NNI +GGTH G R+ Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + ++ + +++ SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I + S+GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LDI Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|160878167|ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg] gi|160426833|gb|ABX40396.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg] Length = 642 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 302/641 (47%), Positives = 417/641 (65%), Gaps = 10/641 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY + I V Sbjct: 2 SKDYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCNTIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP + +K++GIS EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 SINPDNSITVIDNGRGIPVETNKKKGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ ++ EG +Y+ + G + PL V G + + TGT V+FLP IF Sbjct: 121 VVNALSEWLEVTVELEGKMYKQRYECGKVIEPLRVVGES-DRTGTTVSFLPDRSIFEETV 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLID------KRSPEPREITMFYKGGIEAFVSYLDRHK 240 ++YD L+ RLRE++FL ++I L D + + EP Y+GGI+ +V YL++HK Sbjct: 180 YDYDILKQRLREMAFLTKGLKIILRDLRTSEEEGNTEPNVKEFHYEGGIKEYVQYLNKHK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L I +G+RD++ +++AM+ ND Y E+ F NNI +GGTH +G ++A+T+ Sbjct: 240 SNLYPEIIYCEGTRDSVYVEVAMQHNDSYSESCYSFVNNITTPEGGTHYTGFKNAITKTF 299 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 + + K ++ ++ G+D REG T+++SIK+PDP+F QTK+KL +SE R+ V+S V Sbjct: 300 NDFARQMKFLKDNETNLSGEDIREGLTAIISIKLPDPQFEGQTKQKLGNSEARAAVDSVV 359 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ L+ +LE++P AKII++K + A RDAAR+ARDLTRRK L+ SLPGKLADCS++ Sbjct: 360 SEQLTYFLEQNPSVAKIILEKAVLAQRARDAARKARDLTRRKTALEGMSLPGKLADCSDK 419 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DPK E+++VEGDSAGGSAK RSR QAILPLRGKILNVE++R DK+L + EI +ITA Sbjct: 420 DPKNCEIYIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKSRLDKILVNNEIKAMITA 479 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGI D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI +G++Y+ +PP Sbjct: 480 FGTGI-SDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLAQPP 538 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + + K + Y +E L + L+ + G + L D + Sbjct: 539 LYKVEKSKQVWYAYSDEDLNNILLQIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRVL 598 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 L + N E +E + A + N Sbjct: 599 LRVKMDEENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKN 639 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYLTILS--LIC 709 G ++ DI R + + ++G+ I + + R I + Y+ + L Sbjct: 482 TGISDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIRDGYVYLAQPPLYK 541 Query: 710 NGDKIKI---TGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 ++ L + + IGR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 542 VEKSKQVWYAYSDEDLNNILLQIGRDQNNKIQRYKGLGEMDAEQLWETTMDPERRVLLRV 601 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 K+ + + + D F+ LMGD VEPRREFI+ N+ LDI Sbjct: 602 KMDEENSSEIDLTFTTLMGDNVEPRREFIEANAKYVKNLDI 642 >gi|203287878|ref|YP_002222893.1| DNA gyrase, subunit B [Borrelia recurrentis A1] gi|201085098|gb|ACH94672.1| DNA gyrase, subunit B [Borrelia recurrentis A1] Length = 639 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 278/584 (47%), Positives = 404/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YE++DN+IDE+L G+ D I V + Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEIVDNSIDEALAGFCDRIEVVI 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S V+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVGVSVV Sbjct: 66 NSDNSIMVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGVSVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + REG +++ ++ GI + + V G TGT+VTF S+IF ++ Sbjct: 126 NALSSFLEVVVSREGKLFKQTYSRGIPTSEVEVVG-VSFTTGTKVTFFADSEIFETLKYD 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ D+R E + + +++GGI+AFV Y+ + K + SP Sbjct: 185 FETLSRRLRELAFLNDKIRISIEDRRLGEEKFLEFYFEGGIKAFVDYITNNNKNIQSSPY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G +++ + + ++W +GY +N L F NNI K+GGTH++G +S L + ++ S Sbjct: 245 FIEGVCNDVIVSVGLKWTEGYSDNTLSFVNNINTKEGGTHVAGFKSGLLKAMSETFRDSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V DGL + Sbjct: 305 ISKKDIPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVYDGLLRII 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 E+ +E II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 NENFVEIDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCTSKNPAEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 425 IVEGDSAGGSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKA 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI N +YI PPLY I Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNKHVYIAMPPLYKIKHEN 543 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 + Y D+ E +L + + ++ G ++ L Sbjct: 544 KVHYFYDDFEKETFLGSIDVGKRNKVSLQRYKGLGEMNPTQLWE 587 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKAFYIEKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKG-ISMQ 737 F F + I + + + + + +G++ +S+Q Sbjct: 513 LTFFFRYMRELIDNKHVYIAMPPLYKIKHENKVHYFYDDFEKETFLGSIDVGKRNKVSLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + ++I DA QA+ +F LMGD+VEPRREFI++N+L Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632 Query: 798 P-SALDI 803 LD+ Sbjct: 633 DVVNLDV 639 >gi|291563505|emb|CBL42321.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SS3/4] Length = 639 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 262/622 (42%), Positives = 380/622 (61%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DNA+DE L G+ I Sbjct: 1 MAKAQYNADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNAVDEHLAGFCTEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVTL DGSCTV DNGRGIP ++HK+ G+SA V+++ LHAGGKF+ SYK SGGLHGVG Sbjct: 60 TVTLEADGSCTVKDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNNSYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179 SVVNALS +K++I R+G +Y + G L V G + +TGTE+ FLP Sbjct: 119 SSVVNALSDRMKVKISRDGKVYYDEYEKGHPVIELKDGLLPVIGKSK-ETGTEINFLPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F + L+ RL E ++LN ++ + ++KR+ E IT GI A+V L+ Sbjct: 178 TIFEKTKFKAEWLKSRLHESAYLNPNLALHYVNKRAGEEEMITYHEPDGIIAYVRELNNG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ P+ +GS D I +++A ++ D + EN+L F NNI ++GGTHL G ++ T+ Sbjct: 238 KDPVH-EPVYFKGSVDRIEVEVAFQFVDAFEENILGFCNNIFTQEGGTHLVGFKTKFTQL 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V+++K PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADATKAVFTM 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 D L + + + K I+ ++ +R A +A+ K S GKLA+C Sbjct: 357 TGDELERFFDRNLDTLKAIIACAEKSAKIRKAEEKAKTNMLSKSKFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDPSKCEIFIVEGDSAGGSAKMGRNRQFQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI KL+Y KI++MTDADVDG+HI TLLLTF +R MP LI++G +YI Sbjct: 476 AFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY + + +Y+ D+++LE+Y N + ++ + + + ++ Sbjct: 536 AMPPLYKVVPKRGEERYLYDDKALEEYKKNHAGDFTLQRYKGLGEMDADQLWETTLNPEN 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKRVEIEDARMASEVTELLM 617 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 14/191 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676 + N E V +++ +N + + + D +V V + Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLKYDKIVLMTDADVDGSHI 512 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKG-- 733 F + + I+ + + ++ G++ + D +K Sbjct: 513 DTLLLTFLYRFMPELIYDGHVYIAMPPLYKVVPKRGEERYLYD-----DKALEEYKKNHA 567 Query: 734 --ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 ++QRYKGLGEM+A QLWETTLNP+ R L RV+I DA A ++ LMG +V PR++F Sbjct: 568 GDFTLQRYKGLGEMDADQLWETTLNPENRVLKRVEIEDARMASEVTELLMGSDVPPRKKF 627 Query: 792 IQENSLPSALD 802 I +++ + +D Sbjct: 628 IYDHADEAEID 638 >gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis ATCC 700338] gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus bovis ATCC 700338] Length = 650 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 275/628 (43%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLAELAKEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEKDDSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + R G I+ + G + + L V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVSVHRNGKIHYQEYRRGHVVSDLAVIGDT-DRHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISITDKREGIEQEKHYHYEGGISSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K+ + ++PI G D +S+++AM++ YHE V+ F NNI +GGTH G R+ Sbjct: 239 FINENKEAIFENPIYTDGELDGVSVEVAMQYTTSYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKLLKEKDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFSRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D +ELF+VEGDSAGGSAK GR RE+QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDATMNELFIVEGDSAGGSAKSGRDREHQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + ++ + +++ SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYIQPGANQEIELQEAM--ARHSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I + S+GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 548 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LDI Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110] gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110] Length = 642 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 288/636 (45%), Positives = 406/636 (63%), Gaps = 9/636 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 2 TTKSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + +N DGS TV+D+GRGIPTD+H G SA E +MT LHAGGKF YKVSGGLHGVG Sbjct: 61 EIDINPDGSVTVTDDGRGIPTDVHPSTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS W+ +++ R+ ++ + G+ L + TGT ++FLP IF+V Sbjct: 121 VSVVNALSEWVIVKVWRDDQVHTQRYERGVPITSLETKADKDHSTGTSISFLPDKTIFTV 180 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+Y TL RLREL++LN+ V+I+ D R EP + Y+GGI+ +V+Y+ R K PL Sbjct: 181 GTEFDYSTLAGRLRELAYLNAGVKITFTDNRKEEPHIESYCYEGGIKEYVTYMCRDKDPL 240 Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 Q I + G ++ +++A + D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 HQDIIFVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 K K + ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + Sbjct: 301 VARKRNKLKDNDSNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 LS +LE +P A I++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP Sbjct: 361 VLSEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++SE+FLVEGDSAGGSAKQGR R QAILPLRGKI+N+E+ ++ + EI +LITALG Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI + FD ++LRYH+I+IMTDADVDGAHIRTLLLTFF+R SL+ G++YI PPLY Sbjct: 481 LGIKGEEFDSSQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + RG++ Y +E L++++ + + G + L + ++ Sbjct: 541 KVERGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDT-----TMNPET 595 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + E I + + + + Sbjct: 596 RRMKQVEIEDAAEADRIFTILMGDRVAPRREFIETY 631 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 12/159 (7%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLI 708 ++S + RI + ++G+ I + F +Y+R ++ + Sbjct: 486 EEFDSSQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVE 543 Query: 709 CNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + + L + I S+ S+QR+KGLGEM +QLW+TT+NP+TR + +V+I Sbjct: 544 RGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEI 603 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LPSA-LDI 803 DA++AD +F+ LMGD V PRREFI+ L LDI Sbjct: 604 EDAAEADRIFTILMGDRVAPRREFIETYGPKLDLNDLDI 642 >gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens] Length = 588 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 274/559 (49%), Positives = 386/559 (69%), Gaps = 5/559 (0%) Query: 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92 G T GLHH+++E++DN+IDE+L GY I + + D S TV DNGRGIP + ++ G Sbjct: 1 GSTSS-KGLHHLVWEIVDNSIDEALAGYCTDINIEIEKDNSITVKDNGRGIPVGIQEKMG 59 Query: 93 ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 A EVIMT LHAGGKF+ YKVSGGLHGVG SVVNALS+ L + + R+G I+ ++ Sbjct: 60 RPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVNALSTTLDVTVHRDGKIHYQAYER 119 Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI 211 G+ L V G + TGT F+P +IF ++YD L +R+REL+FL V I++ Sbjct: 120 GVPVADLEVIGDT-DKTGTITHFVPDPEIFKETTVYDYDLLSNRVRELAFLTKGVNITIE 178 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 DKR + R+ Y+GGI+++V YL+R K+ + + PI I+G +D I++++A+++ND Y Sbjct: 179 DKREGQERKNEYHYEGGIKSYVEYLNRSKEVIHEEPIYIEGEKDGITVEVALQYNDSYTS 238 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 N+ FTNNI +GGTH +G ++ LTR I Y + K++ ++ GDD REG T+++S Sbjct: 239 NIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARRKGIFKENDPNLSGDDVREGLTAIIS 298 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 IK PDP+F QTK KL +SE R++ ++ + L +L E+P A+ IV+K L A+ R A Sbjct: 299 IKHPDPQFEGQTKTKLGNSEARTITDTLFSSALETFLLENPDSARKIVEKGLMAARARMA 358 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 A++AR+LTRRK L+I++LPGKLADCS +DP SEL++VEGDSAGGSAKQGR R QAIL Sbjct: 359 AKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQGRDRHFQAIL 418 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PLRGKILNVE+AR DK+LS+ E+ ++ITALGTGIG+D F++ K RYHK++IMTDADVDGA Sbjct: 419 PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGED-FNLEKARYHKVVIMTDADVDGA 477 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 HIRTLLLTFF+R M +I NG++YI +PPLY + +GK ++Y +++ L++ L S + Sbjct: 478 HIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRVEYAYNDKQLDELLKELPQSPK 537 Query: 572 I-ELFCDSKGVISKNDLRN 589 G ++ L Sbjct: 538 PGLQRYKGLGEMNATQLWE 556 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 9/182 (4%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + ++ +V Sbjct: 412 RHFQAIL--PLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDFNLEKARYHKVVIM 469 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSL 722 V + F + + I + + L + G +++ L Sbjct: 470 TDADVDGAHIRTLLLTFFYRYMREIIENGYVY-IAQPPLYKVQQGKRVEYAYNDKQLDEL 528 Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L + + G+ QRYKGLGEMNA+QLWETT++P TR+LL+V + DA AD+ F LMG Sbjct: 529 LKELPQSPKPGL--QRYKGLGEMNATQLWETTMDPATRTLLQVNLEDAMDADETFEMLMG 586 Query: 783 DE 784 D+ Sbjct: 587 DK 588 >gi|225028802|ref|ZP_03717994.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353] gi|224953886|gb|EEG35095.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353] Length = 638 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 251/617 (40%), Positives = 375/617 (60%), Gaps = 8/617 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q ++Y+A+SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 3 QQTTYNANSIAVLEGLEAVRKRPGMYIGSVS-TRGLNHLIYEIVDNAVDEHLAGYCSNIQ 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L+ DG+ T+ DNGRGIPT ++ + GI A E++ T LHAGGKF YK+SGGLHGVG Sbjct: 62 VILDEDGTATIQDNGRGIPTGINSKTGIPAVEMVFTMLHAGGKFGTGGYKISGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSV 184 SVVNALS WL+++++ EG +Y+ + G PL V G+ DTGT VTFLP +IF Sbjct: 122 SVVNALSVWLEVKVRSEGKVYQQMYEKGKAVAPLEVIGTCRKGDTGTTVTFLPDGEIFDK 181 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F ++++ RL E ++LN + I+ ++R E + + G++A+V L++ KP + Sbjct: 182 TYFKAESIKSRLHETAYLNPGLSITFENRRPGEEETVLFHEEEGLKAYVRDLNKG-KPAV 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + D+I ++ A ++ D + E ++ F NNI +GGTH++G ++ T + Y Sbjct: 241 GEIVYFKKKVDDIEVEAAFQYVDEFQETIMGFCNNICTMEGGTHITGFKTKFTSVMNQYA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + K+ ++ G D R G T+VLSIK DPRF QTK KL + + V + + L Sbjct: 301 RELGILKEKDKNFTGADVRNGMTAVLSIKHKDPRFEGQTKTKLDNPDAGKAVSEVLGEEL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + + E K ++ ++ +R A RAR K I + GKLA+C R+P++ Sbjct: 361 PLYYDRNLEELKKVIACAEKSAKIRKAEERARTNLISKSKFSIDT-NGKLANCESRNPEE 419 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I G G Sbjct: 420 CEVFIVEGDSAGGSAKTARNRRTQAILPIRGKILNVEKASMDKVLANAEIKTMIHTFGCG 479 Query: 485 IGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 + + FDI+KL+Y+KI+IMTDADVDGAHI TLLLTFF+R MP LIH G +Y+ PPL Sbjct: 480 FSEGYGNDFDISKLKYNKIVIMTDADVDGAHIATLLLTFFYRFMPDLIHQGHVYLATPPL 539 Query: 542 YG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y I + +Y+ D+ +LE+Y N + ++ F + ++ ++ +I K Sbjct: 540 YKAIPKRGKEEYLYDDRALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTLNPETRILKQ 599 Query: 601 IKDFYPNHDKTFIEQAV 617 ++ + Sbjct: 600 VEIEDGRLASEVTSMLM 616 Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 1/97 (1%) Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 ++ G + + L+ + ++QR+KGLGEM+A QLWETTLNP+TR L +V Sbjct: 542 AIPKRGKEEYLYDDR-ALENYRKNHKSNFTLQRFKGLGEMDAEQLWETTLNPETRILKQV 600 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 +I D A ++ S LMG EV PRR FI ++ + LD Sbjct: 601 EIEDGRLASEVTSMLMGSEVPPRRAFIHAHAQDADLD 637 >gi|153854251|ref|ZP_01995550.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814] gi|149753026|gb|EDM62957.1| hypothetical protein DORLON_01544 [Dorea longicatena DSM 13814] Length = 643 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 291/591 (49%), Positives = 394/591 (66%), Gaps = 4/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ Sbjct: 1 MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CDTIYVTINKDNSVTVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS+WL++ I EG +Y+ + G + L V G TGT+VTFLP Sbjct: 120 HGVGASVVNALSNWLEVEIYHEGKVYQQRYERGKVMEKLTVIGDCEEEKTGTKVTFLPDD 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F+++ L+ R RE++FL ++I L D R EP+E T Y+GGI+ FV+YL+R Sbjct: 180 TIFETTIFDFNVLKQRFREMAFLTKGLKIVLKDDREEEPKERTFHYEGGIKEFVTYLNRS 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 PL + I +G +N+S+++AM+ ND Y +N F NNI +GGTH+ G R+A+T+ Sbjct: 240 ATPLYEQIIYCEGMVNNVSVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNAITKT 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K+ + ++ ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ Sbjct: 300 FNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNV 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V+ L +LE++P KIIV+K + + R+AAR+ARDLTRRK LD +LPGKLADCS+ Sbjct: 360 VSKQLEIFLEQNPAVGKIIVEKSVMSQRAREAARKARDLTRRKSALDNMALPGKLADCSD 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P+ E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ + EI +IT Sbjct: 420 KNPENCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMIT 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +P Sbjct: 480 AFGTGIHED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQP 538 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 PLY + + K + Y +E L + + G + L Sbjct: 539 PLYKLEKNKKVWYAYSDEELSNIINEVGRDGNNKIQRYKGLGEMDAEQLWE 589 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R I++ Y+ + Sbjct: 483 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYK 542 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + I +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 543 LEKNKKVWYAYSDEELSNIINEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 602 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI EN+ LD+ Sbjct: 603 TMDDETTSELDLTFTTLMGDKVEPRREFIVENAKYVKNLDV 643 >gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z] gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z] Length = 651 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 290/638 (45%), Positives = 405/638 (63%), Gaps = 31/638 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+DN YDA I +L+GL V++RP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MTDN-----YDASHITVLEGLTPVRERPAMYIGSTD-TRGLHHLVYEVVDNSIDEALAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I + +N +GS +V D+GRGIP D+ ++ SA EV+MT LHAGGKF++ +Y+VSGGL Sbjct: 55 CKHIVIIINPNGSVSVEDDGRGIPVDIMPKQNKSALEVVMTVLHAGGKFDKNTYQVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--------------- 165 HGVGVSVVNALS+ L + R+GNIY M F G+L PL Sbjct: 115 HGVGVSVVNALSTRLTAEVYRDGNIYSMVFGKGVLLQPLTSRPETDEEYLLRQKRLDKEG 174 Query: 166 ---GNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT 222 TGT +TF P IF +F+YD L HR REL++LN ++I + D R+ + T Sbjct: 175 QPKETTTGTRITFYPDGSIFETTEFDYDVLAHRFRELAYLNKGLEIHVEDHRTGDS--DT 232 Query: 223 MFYKGGIEAFVSYLDRHKKPLMQSPIRI--QGSRDNISIDLAMRWNDGYHENVLCFTNNI 280 Y+GG+ FV++L+ K+ L PI + + I +++A+++ND Y E + + N++ Sbjct: 233 FCYEGGLRQFVAHLNEGKELLHPEPIYVDKSDDVNKIEVEVALQYNDTYGEILYTYVNSV 292 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 ++GGTHL G RSALTR I + + K + SV G+D REG T+V+S+K+ +P+F Sbjct: 293 NTREGGTHLEGFRSALTRAINNIAHANKHLK-EDVSVRGEDVREGLTAVISVKIANPQFE 351 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK +L +S V+ +V+S + L+ + EE+P I KK LDA+ R+AARRA++L R Sbjct: 352 GQTKMRLGNSNVKGLVDSMMYQALTEFFEENPKVIAAIAKKSLDAANAREAARRAKELAR 411 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK L+++ LPGKLADCSERDP KSE+++VEGDSAGGSAKQGR R+ QAILPLRGKILNV Sbjct: 412 RKTSLEMSGLPGKLADCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 471 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+A K L + EI TLITA+G G G D FD + RYH I+IMTDADVDGAHIR LLLTF Sbjct: 472 EKALEHKALKNAEIQTLITAIGAGYG-DKFDAERARYHHIVIMTDADVDGAHIRILLLTF 530 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG 580 F+R M L+ G++YI +PPL+ I +GK +YV EE + + G Sbjct: 531 FYRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKGISVQRYKGLG 590 Query: 581 VISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAV 617 ++ L N ++ +I K ++ ++ E+ + Sbjct: 591 EMNAGQLWNTTMNPEFRILKQVRIEDASYANEIFEKLM 628 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E +++ + I + +V V + Sbjct: 468 ILNVEKALEHKALKNAEIQTLITAIGAGYGDKFDAERARYHHIVIMTDADVDGAHIRILL 527 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + I + + + + + I G KGIS+QRYK Sbjct: 528 LTFFYRFMKPLVEMGYIYIAQPPLFRIAKGKQEKYVYTEEDMRLAIAEYGEKGISVQRYK 587 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW TT+NP+ R L +V+I DAS A+++F +LMGD+V PR++FI+ ++ Sbjct: 588 GLGEMNAGQLWNTTMNPEFRILKQVRIEDASYANEIFEKLMGDDVMPRKDFIKRHAGEVK 647 Query: 800 ALDI 803 LDI Sbjct: 648 NLDI 651 >gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale] gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale] Length = 588 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 271/581 (46%), Positives = 377/581 (64%), Gaps = 7/581 (1%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T GE GLHH+++E++DN+IDE+L GYAD I + + D VSDNGRGI Sbjct: 1 VRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADHIEIEVLKDNVIRVSDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D+H + G A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W + I ++G Sbjct: 60 PVDIHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSVWYVVEIHKDG 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 IYE + GI L G N TGT TF IF+ ++ +TL+ R+++L+FL Sbjct: 120 KIYEQKYERGIPAYDLKELGET-NRTGTITTFKADPLIFTETTVYDIETLRTRIQQLAFL 178 Query: 203 NSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261 N + ISL D + + T Y GGI +V +L+++KK + I + +D +++++ Sbjct: 179 NRGITISLSDSRDENHIYQETFKYDGGIIEYVKFLNQNKKTIHPDIIYFEKEQDGVTVEV 238 Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321 AM++ D Y N+ FTNNI +GG H G + ALTR I+ Y + K ++IG+D Sbjct: 239 AMQYVDTYTPNIHSFTNNISTTEGGMHEDGYKMALTRVISRYADDMK--AKKDDAIIGED 296 Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 REG T+++S+K P+P+F QTK KL + EVR++ + L +L E+P +AK IV+K Sbjct: 297 TREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQVTQEALERFLLENPQQAKSIVEK 356 Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441 V++A+ R A+R+A++L RRK LD KLADC +DP+KSELF+VEGDSAGGSAKQ Sbjct: 357 VIEATRARVASRKAKELARRKSPLDQLDFASKLADCRSKDPEKSELFIVEGDSAGGSAKQ 416 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 GR E QAILPLRGK+LNVE+AR D ML ++EI +I A+GTGI + FDI+KLRYHKI+ Sbjct: 417 GRDSEFQAILPLRGKVLNVEKARIDTMLKNKEIINIIQAIGTGI-SEEFDISKLRYHKIV 475 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561 IMTDADVDGAHIRTLLLTFFFR M LI NG +Y +PPLY ++ G++++Y +E L + Sbjct: 476 IMTDADVDGAHIRTLLLTFFFRHMRPLIENGHIYAAQPPLYKVSYGRNVKYAYSDEELNE 535 Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 ++ + + + ++ + I+ Sbjct: 536 ITSKLETKPTLQRYKGLGEMNYEQLWDTTMNPETRTLLQIQ 576 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 1/158 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + + ++ N + I + + S +V V + Sbjct: 432 VLNVEKARIDTMLKNKEIINIIQAIGTGISEEFDISKLRYHKIVIMTDADVDGAHIRTLL 491 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + I L + G +K L+ I S ++QRYK Sbjct: 492 LTFFFRHMRPLIENGHIYA-AQPPLYKVSYGRNVKYAYSDEELNEITSKLETKPTLQRYK 550 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 GLGEMN QLW+TT+NP+TR+LL++++ DA +AD +F+ Sbjct: 551 GLGEMNYEQLWDTTMNPETRTLLQIQLDDAIEADQIFT 588 >gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528] gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528] Length = 637 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 294/588 (50%), Positives = 412/588 (70%), Gaps = 7/588 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY D Sbjct: 3 QEKKQTYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCDK 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV+DNGRG+P +H + EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 INVIIHKDNSITVTDNGRGMPVGMHHKMKKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ +KRE +I+ F G + + L + G + + GT++ F P ++IF Sbjct: 122 GASVVNALSEICEVEVKRESHIWRQVFKRGKVASGLDIIGDSE-EHGTKIHFKPDAEIFD 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +++YDTL RLREL+FLN ++I L D+R + Y+GGI++FV+YL+R+K+P+ Sbjct: 181 EIEYDYDTLAQRLRELAFLNKGIKIRLEDERDDKE--EIFHYEGGIKSFVTYLNRNKQPI 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI ++G +D+ S+++A+++NDGY EN+ F NNI +GGTHL+G +SALTR Y Sbjct: 239 HKEPIYVEGKKDDYSVEIAIQYNDGYTENIFAFANNIDTVEGGTHLAGFKSALTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K++ +++ G+D REG T+V+S+K+ DP+F QTK KL +SEVR +V+S + + Sbjct: 299 AKKFGILKENDKNLSGEDIREGLTAVISVKLVDPQFEGQTKTKLGNSEVRGIVDSIMGES 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +L+E+P AK+I+ K L AS R+AAR+AR+LTRRK +L+ SLPGKLADCS +DP Sbjct: 359 LNNFLQENPQVAKMILDKSLMASRAREAARKARELTRRKSILENTSLPGKLADCSSKDPS 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E++LVEGDSAGGSAKQGR+R+ QAILPLRGKI+NVE+ R DK+L +EI +ITA G Sbjct: 419 ECEIYLVEGDSAGGSAKQGRNRKFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FD+NK+RY+KIIIMTDADVDGAHIRTLLLTFFFR M L+ +YI +PPLY Sbjct: 479 GIGKD-FDVNKIRYNKIIIMTDADVDGAHIRTLLLTFFFRYMKELVEKCHVYIAQPPLYR 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589 + +GK Y ++ L+ L + G + L + Sbjct: 538 VAKGKKEYYAYSDDELDVLLTEIGGKDSNVDIQRYKGLGEMDSEQLWD 585 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 4/105 (3%) Query: 703 TILSLICNGDKIKITGPCSLLDTIF-SIGRK--GISMQRYKGLGEMNASQLWETTLNPDT 759 L + G K LD + IG K + +QRYKGLGEM++ QLW+TT+NP+T Sbjct: 533 PPLYRVAKGKKEYYAYSDDELDVLLTEIGGKDSNVDIQRYKGLGEMDSEQLWDTTMNPET 592 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 R+L++V + D AD++F+ LMGD+VEPRR FIQEN+ LDI Sbjct: 593 RTLIQVNVEDTMAADEIFTILMGDKVEPRRNFIQENAKKVVNLDI 637 >gi|295401842|ref|ZP_06811806.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111016|ref|YP_003989332.1| DNA topoisomerase IV subunit beta [Geobacillus sp. Y4.1MC1] gi|294976096|gb|EFG51710.1| DNA topoisomerase IV, B subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216117|gb|ADP74721.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y4.1MC1] Length = 656 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 260/593 (43%), Positives = 378/593 (63%), Gaps = 16/593 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY + I V + Sbjct: 8 EYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGYGNYILVKI 66 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S TV D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 67 HKDNSVTVLDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS WL + I R+G IY+ F N G L G N TGT + F P IFS F Sbjct: 126 NALSEWLVVTIHRDGFIYQQRFENGGKPVTTLEKIG-TTNKTGTIIQFKPDPAIFSTTTF 184 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY+TL RLRE +FL ++I LID+R+ Y+ GI+AFV YL+ K L Sbjct: 185 NYETLSERLRESAFLLKGLKIELIDERTG--MSDVFHYENGIKAFVEYLNEDKDVLHP-V 241 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + +G ++ I ++ A ++NDGY ENVL F NN+ KDGGTH +G ++A+TR Y K+ Sbjct: 242 VYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARKN 301 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V++ V++ L+ Sbjct: 302 GLLKEKDKNLEGTDIREGLSAIVSVRIPENLLQFEGQTKGKLGTSEARSAVDAIVSEHLT 361 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423 +L+E+P + +++KK + A R+AAR+AR+ + +K L GKL R+P+ Sbjct: 362 YFLQENPDVSTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLTPAQSRNPQ 421 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI T+I A+G Sbjct: 422 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEINTIIHAIGG 481 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY Sbjct: 482 GVG-PDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYK 540 Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 ++ + + ++Y + L++ ++ + + ++ ++ Sbjct: 541 VSKGSGKKEIVEYAWTDAQLKEITKKLGKGYTVQRYKGLGEMNAEQLWETTMN 593 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLADILKNEEINTIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--TGPCSL-LDTIFSIGRKGISMQ 737 F + I + ++ + + K +I L I KG ++Q Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKVSKGSGKKEIVEYAWTDAQLKEITKKLGKGYTVQ 574 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ N Sbjct: 575 RYKGLGEMNAEQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIEAN 632 >gi|62866002|gb|AAY17151.1| DNA gyrase B [Borrelia turicatae] Length = 634 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+GN ++ ++ GI + + + G + + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKR + R + +++GGI+AFV ++ + K + P Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G+ D++ + + ++W +GY +N+L F NNI ++GGTH++G +S + ++ + S Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V++ L + Sbjct: 300 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 + LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 VNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G++ Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY I Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 S+ Y D+ E +L + + G ++ L Sbjct: 539 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736 F F + I + + + L I + + + + G++ IS+ Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 566 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT+NP TR + ++I DA QA+++F LMGD+VEPRREFI++N+ Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626 Query: 797 LP-SALDI 803 L LD+ Sbjct: 627 LDVVNLDV 634 >gi|145592574|ref|YP_001156871.1| DNA gyrase, B subunit [Salinispora tropica CNB-440] gi|145301911|gb|ABP52493.1| DNA gyrase subunit B [Salinispora tropica CNB-440] Length = 719 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 265/548 (48%), Positives = 362/548 (66%), Gaps = 10/548 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V Sbjct: 77 KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 135 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG V+DNGRG P D H + EV +T LHAGGKF+ K+Y VSGGLHGVGVS Sbjct: 136 VLLADGGVRVTDNGRGFPVDPHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 195 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + I+++G ++ S+ + PL G + + TG+ V+F P +F Sbjct: 196 VVNALSTRMAVEIQKDGYVWRQSYTDSKP-TPLEK-GESTDATGSAVSFWPDPRVFETVA 253 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----PREITMFYKGGIEAFVSYLDRHKK 241 F++ T+ RL+E++FLN + I +D+R E RE+T Y+GGI FV +L+ K Sbjct: 254 FDFQTIYRRLQEMAFLNRGLTIHFLDERVDEGDDGKMREVTFCYQGGIADFVRHLNASKT 313 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + +S + D +S+++AM+WN+ Y E+V F NNI +GGTH G RSALT I Sbjct: 314 SIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRSALTSVIN 373 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + G+D REG +++S+K+ +P+F QTK KL ++ V+S V+ N Sbjct: 374 RYGA-EKRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCN 432 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L WL+ +P EAK+I+ K A+ R AA++AR L RRK +L+ S+PGKLADC D Sbjct: 433 EWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLADCQSTD 492 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++ E+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR D++L + E+ LITAL Sbjct: 493 PRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 552 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI D FDI KLRYHKI++M DADVDG HI+TLLLT FR M L+ G +Y+ PPL Sbjct: 553 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 611 Query: 542 YGITRGKS 549 Y I + Sbjct: 612 YKIKWNRK 619 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 651 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 710 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 711 AKDVRFLDI 719 >gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142] gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142] Length = 642 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 287/636 (45%), Positives = 405/636 (63%), Gaps = 9/636 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 2 TTKSNYGAEQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + +N DGS TV+D+GRGIPTD+H G SA E +MT LHAGGKF YKVSGGLHGVG Sbjct: 61 EIDINPDGSVTVTDDGRGIPTDIHPSTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS W+ +++ R+ ++ + GI L + TGT ++FLP IF+V Sbjct: 121 VSVVNALSEWVIVKVWRDDEVHTQRYERGIPITNLETKPDKNHSTGTSISFLPDKKIFTV 180 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+Y TL RLREL++LN+ V+I+ D R EP + Y+GGI+ +V+Y+ R K PL Sbjct: 181 GIEFDYSTLAGRLRELAYLNAGVRITFTDNRKEEPHVESYCYEGGIKEYVTYMCRDKDPL 240 Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 Q I + G ++ +++A + D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 HQDIIFVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 K K + ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + Sbjct: 301 VARKRNKLKDNDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LE +P A I++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP Sbjct: 361 VLTEYLEFNPHVADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++SE+FLVEGDSAGGSAKQGR R QAILPLRGKI+N+E+ ++ + EI +LITALG Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI + FD +LRYH+I+IMTDADVDGAHIRTLLLTFF+R +L+ G++YI PPLY Sbjct: 481 LGIKGEEFDPAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYIACPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + RG++ Y +E L++++ + + G + L + ++ Sbjct: 541 KVERGRNHVYCYNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDT-----TMNPET 595 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + E I + + + + Sbjct: 596 RRMKQVEIEDAAEADRIFTILMGDRVAPRREFIETY 631 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 132/331 (39%), Gaps = 32/331 (9%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562 DA++ G ++R L ++P G + + GI + + + + Sbjct: 312 DANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVLTEYLEFNPH 371 Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQAV 617 + + + + ++ F ++ +L R + ++ + + D + F+ + Sbjct: 372 VADSIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSTRDPEESEIFLVEGD 431 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI--------------NNSDIL 663 +G + ++ +N + + + D Sbjct: 432 SAGGSAKQGRDRRFQAILPLRGKIINIEKTDDARIYKNNEIQSLITALGLGIKGEEFDPA 491 Query: 664 VKRIARGVQ-EQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLICNGDKIKI 716 R R V ++G+ I + F +Y+R ++ + + + Sbjct: 492 QLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYVYIACPPLYKVERGRNHVYC 551 Query: 717 TGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L + I S+ S+QR+KGLGEM +QLW+TT+NP+TR + +V+I DA++AD Sbjct: 552 YNERQLQEHINSLPANANYSIQRFKGLGEMMPTQLWDTTMNPETRRMKQVEIEDAAEADR 611 Query: 776 LFSRLMGDEVEPRREFIQENS--LPSA-LDI 803 +F+ LMGD V PRREFI+ L LDI Sbjct: 612 IFTILMGDRVAPRREFIETYGPKLDLNDLDI 642 >gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius] Length = 648 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 278/622 (44%), Positives = 406/622 (65%), Gaps = 6/622 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + +Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 5 TKEMQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFA 63 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVSGGLH Sbjct: 64 THIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVSGGLH 123 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F P +I Sbjct: 124 GVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGQVVADLKIIGET-DRTGTTVHFTPDPEI 182 Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y++ +K Sbjct: 183 FTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYINENK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + ++PI G D+I++++A+++ GYHE V+ F NNI +GGTH G R+ALTR I Sbjct: 243 DVIFENPIYTDGEMDDITVEVAIQYTTGYHETVMSFANNIHTHEGGTHEQGFRTALTRVI 302 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 303 NDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLF 362 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ S +L E+P AK I++K + AS R AA+RAR++TR+K L+I++LPGKLADCS Sbjct: 363 SEAFSDFLLENPAVAKKIIEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSN 422 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA Sbjct: 423 DPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTA 482 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTG G D FD+NK RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP Sbjct: 483 MGTGFGAD-FDVNKTRYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYIAQPP 541 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 +YG+ G ++ + + L+ E SK I + +DD + Sbjct: 542 IYGVKVGSEVKEYI--QPGVNQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQLWETT 599 Query: 601 IKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 600 MNPEHRLMARVSVDDAAEADKI 621 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 46/76 (60%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR S+QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 633 RREFIEENAVYSTLDV 648 >gi|119953224|ref|YP_945433.1| DNA gyrase subunit B [Borrelia turicatae 91E135] gi|119861995|gb|AAX17763.1| DNA gyrase subunit B [Borrelia turicatae 91E135] Length = 639 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 66 NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+GN ++ ++ GI + + + G + + GT+VTFL S+IF +++ Sbjct: 126 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKR + R + +++GGI+AFV ++ + K + P Sbjct: 185 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G+ D++ + + ++W +GY +N+L F NNI ++GGTH++G +S + ++ + S Sbjct: 245 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V++ L + Sbjct: 305 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 + LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 GNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G++ Sbjct: 425 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY I Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 543 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 S+ Y D+ E +L + + G ++ L Sbjct: 544 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 587 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736 F F + I + + + L I + + + + G++ IS+ Sbjct: 513 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 571 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT+NP TR + ++I DA QA+++F LMGD+VEPRREFI++N+ Sbjct: 572 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 631 Query: 797 LP-SALDI 803 L LD+ Sbjct: 632 LDVVNLDV 639 >gi|62865988|gb|AAY17144.1| DNA gyrase B [Borrelia turicatae] gi|62865990|gb|AAY17145.1| DNA gyrase B [Borrelia turicatae] gi|62865992|gb|AAY17146.1| DNA gyrase B [Borrelia turicatae] gi|62865994|gb|AAY17147.1| DNA gyrase B [Borrelia turicatae] gi|62865996|gb|AAY17148.1| DNA gyrase B [Borrelia turicatae] gi|62865998|gb|AAY17149.1| DNA gyrase B [Borrelia turicatae] gi|62866000|gb|AAY17150.1| DNA gyrase B [Borrelia turicatae] Length = 634 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 276/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+GN ++ ++ GI + + + G + + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSEVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKR + R + +++GGI+AFV ++ + K + P Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKNIQSEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G+ D++ + + ++W +GY +N+L F NNI ++GGTH++G +S + ++ + S Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V++ L + Sbjct: 300 ISKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 + LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 GNNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G++ Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY I Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 S+ Y D+ E +L + + G ++ L Sbjct: 539 SVHYFYDDSEKEVFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736 F F + I + + + L I + + + + G++ IS+ Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEVFLSSIETGKRDKISL 566 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT+NP TR + ++I DA QA+++F LMGD+VEPRREFI++N+ Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626 Query: 797 LP-SALDI 803 L LD+ Sbjct: 627 LDVVNLDV 634 >gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV] gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV] Length = 648 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 280/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MSEENKELQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFENPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + + L+ E SK I + +DD Sbjct: 538 AQPPIYGVKVGSEVKEYI--QPGANQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 46/76 (60%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR S+QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 633 RREFIEENAVYSTLDV 648 >gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453] gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453] Length = 634 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 293/620 (47%), Positives = 416/620 (67%), Gaps = 16/620 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD + IQ+L+GL+AV+KRP MYIG T GLHH+++EV+DN+IDE++ G D I Sbjct: 1 MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSIDEAMAGICDHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + ++ D S TV DNGRGIP + + S EV+MT LHAGGKF YKVSGGLHGVG Sbjct: 60 EIIVHEDNSVTVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALSS + +++KR+G+IY+ + G+ + V G + ++ GT VTFLP +IF Sbjct: 120 VSVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDS-DEHGTTVTFLPDPEIFTE 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + Y TL R+REL+FLN + ++L D+R+ Y+GGI +V +L+ K+ L Sbjct: 179 TTVYEYTTLLTRIRELAFLNKGIALTLTDERTG--ASDFFKYEGGIIEYVKFLNEKKEAL 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI ++GSRDNI +++++++ND Y EN+ F NNI +GGTH SG +SALTR I Y Sbjct: 237 HEDPIYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K + ++ GDD REG T+++S+K+P+P+F QTK KL +SEVR +VES + Sbjct: 297 ARKTGMIKDNNNNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEK 356 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L+E+P ++ I++K L AS R+AAR+AR++TRRK L++++LPGKLADCS +D Sbjct: 357 LQEFLQENPSVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDAS 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SEL++VEGDSAGGSAKQGR R QAILPLRGKILNVE+AR D++LS+ EI +ITALGT Sbjct: 417 ISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGT 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI + FD++K RYHKIIIMTDADVDGAHIRTLLLTFF+R M L+ G++YI +PPL+ Sbjct: 477 GI-AEDFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFK 535 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + R K ++Y E+ ++ + + +I G ++ L + + Sbjct: 536 VERNKVIRYAGSEKERDEIIKEFGENVKINVQRYKGLGEMNAGQLW---------ETTMD 586 Query: 603 DFYPNHDKTFIEQAVISGVF 622 + IE A+++ Sbjct: 587 PESRTMLQVTIEDAILADTL 606 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 4/199 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + + + S ++ Sbjct: 438 RHFQAIL--PLRGKILNVEKARLDRILSNAEIRAIITALGTGIAEDFDLSKARYHKIIIM 495 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + K + + I + + N + I Sbjct: 496 TDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKVERNKVIRYAGSEKERDEII 555 Query: 727 FSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 G I++QRYKGLGEMNA QLWETT++P++R++L+V I DA AD LF LMGD V Sbjct: 556 KEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDAILADTLFDTLMGDNV 615 Query: 786 EPRREFIQENSLPS-ALDI 803 EPRR+FIQE++ LD+ Sbjct: 616 EPRRDFIQEHAKTVRNLDV 634 >gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03] gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99] Length = 640 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 292/592 (49%), Positives = 402/592 (67%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D + +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R+G I+ ++ G+ L G + TGT + F Sbjct: 120 HGVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF +NY+TLQ R+REL+FLN ++I+L D+R E Y+GGI+++V ++ Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENVREDSYHYEGGIKSYVELINE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+PL P+ + +RD+I +++A+++N G+ N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPLHDEPVYVHQTRDDIEVEIALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y +S K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR +V+ Sbjct: 299 VLNNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDR 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L EHP A+IIV+K + AS R AA++AR++TRRK LDI+SLPGKLADCS Sbjct: 359 VFSELFERFLYEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP +SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR DK+L++ EI ++ Sbjct: 419 SKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMV 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PPLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKEKLNPTPKWSIARYKGLGEMNADQLWE 589 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 462 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740 R IE Y+ I L K + LD + K S+ RYK Sbjct: 522 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 577 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 GLGEMNA QLWETT+NP+ R++L+V + DA +AD F LMGD VE RR+FI++N++ + Sbjct: 578 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 637 Query: 801 LD 802 LD Sbjct: 638 LD 639 >gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147] gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147] Length = 651 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 280/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + ++G Y + G++ + L + G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHF 178 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233 +P +IF+ +F++D L R+REL+FLN ++ISL DKR E E+ Y+GGI+++V Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YL+ +K + + I +G D I++++AM++ D YH V+ F NNI +GGTH G R Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y +++ K+++ ++ GDD REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + L+ ++ E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGK Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++E Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G+ Sbjct: 479 IRSLFTAMGTGFGAD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PP+YGI G + ++ + ++L+ + K + + +DD Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + +E A + Sbjct: 596 HQLWETTMDPEHRLMARVSVEDAAEADKI 624 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 2/96 (2%) Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 I G+ + L ++ GR ++QRYKGLGEM+ QLWETT++P+ R + RV Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVS 614 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + DA++AD +F LMGD VEPRREFI+ N+ S +D Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650 >gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403] gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403] gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56] Length = 651 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 281/629 (44%), Positives = 415/629 (65%), Gaps = 12/629 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MNEENKNLEMLADEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIEVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + ++G Y + G++ + L + G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTVLDVTVHKDGQKYYQEYHRGLVGDDLKIIGET-DRRGTTVHF 178 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233 +P +IF+ +F++D L R+REL+FLN ++ISL DKR E E+ Y+GGI+++V Sbjct: 179 VPDPEIFTETVEFDFDKLATRVRELAFLNRGLRISLTDKREGNEKNEVHFHYEGGIQSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YL+ +K + + I +G D I++++AM++ D YH V+ F NNI +GGTH G R Sbjct: 239 EYLNENKTVIFEPAIFTEGEMDGIAVEVAMQYTDTYHSVVMSFANNINTHEGGTHEQGFR 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I +Y +++ K+++ ++ GDD REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 TALTRVINNYAKQNKILKENEDNLTGDDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVT 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + L+ ++ E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGK Sbjct: 359 GIVNKLFAEALTTFMLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++E Sbjct: 419 LADCSSNNPEQTELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G D +D++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G+ Sbjct: 479 IRSLFTAMGTGFGAD-YDLSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +YI +PP+YGI G + ++ + ++L+ + K + + +DD Sbjct: 538 VYIAQPPIYGIKVGSETKEYIQPGENQEKDLQEALARWAQGRT--KPTVQRYKGLGEMDD 595 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 D + + + +E A + Sbjct: 596 HQLWDTTMDPEHRLMARVSVEDAAEADKI 624 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 2/96 (2%) Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 I G+ + L ++ GR ++QRYKGLGEM+ QLW+TT++P+ R + RV Sbjct: 557 YIQPGENQE-KDLQEALAR-WAQGRTKPTVQRYKGLGEMDDHQLWDTTMDPEHRLMARVS 614 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + DA++AD +F LMGD VEPRREFI+ N+ S +D Sbjct: 615 VEDAAEADKIFDMLMGDRVEPRREFIENNAQYSTID 650 >gi|121889|sp|P21558|GYRB_HALSQ RecName: Full=DNA gyrase subunit B gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp gi|149024|gb|AAB09605.1| DNA gyrase beta-subunit [Haloferax lucentense] gi|1899004|gb|AAB49900.1| DNA gyrase beta-subunit [Shuttle vector pMDS20] Length = 639 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 285/594 (47%), Positives = 385/594 (64%), Gaps = 12/594 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q++ Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L G+ Sbjct: 1 MS---QDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGH 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V L+ DGS +V+DNGRGIP H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDAIEVALHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGS--AGNDTGTEVTFLP 177 HGVGV+VVNALSS L++ +K +G ++ F G G DTGT + F P Sbjct: 117 HGVGVTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWP 176 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IF +F++ TL++RLREL+FLNS V+ISL D+R+ E T ++GGI FV YL+ Sbjct: 177 DDGIFETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESS--TFLFEGGIREFVEYLN 234 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K L I + I +++AM+ D ++ F NNI ++GGTHL+G ++ALT Sbjct: 235 ETKTALHDDVIYYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALT 294 Query: 298 RQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 R + Y ++ G+D REG T+V+S+K PDP+F QTK KL +SEVR +V Sbjct: 295 RVVNDYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIV 354 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ES + L + EE+P A I+ K ++A+ R AA++A +LTRRK L+ SLPGKLAD Sbjct: 355 ESVTHQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLAD 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C RDP +SELF+VEGDSAGGSAKQGR R+ QAILPL+GKILNVE+ R D++L + EI Sbjct: 415 CQSRDPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRA 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 LITA+G G+G D FDI K RY ++I+MTDADVDGAHIRTLLLT +R M LI G++Y Sbjct: 475 LITAIGGGVG-DEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYA 533 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRN 589 +PPLY + + DE + + + + G ++ + L + Sbjct: 534 AQPPLYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWD 587 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT+NP+ R L R+ + DA+ AD +F+ LMGD V PR++FI++ Sbjct: 570 QVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMGDAVGPRKQFIKD 629 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 630 HANDAEWVDI 639 >gi|257876709|ref|ZP_05656362.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20] gi|257810875|gb|EEV39695.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC20] Length = 677 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 271/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V DNGRG+P H GI EVI T LHAGGKF Q YK SGGL Sbjct: 60 GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL++ I R+G Y+ SF + G L G TGT VTF P Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D+R EP Y+ GI+ FV YL+ Sbjct: 179 TIFSATRFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L Q + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+ V+ Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L +L+E+ ++++V+K + A R+AAR+AR+ T +K + L GKL Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + ++Y ++ L + G ++ + L Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELNKLTQKIGKGY-LLQRYKGLGEMNADQLWET- 594 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + S + L +K Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILDK 650 Query: 652 SWH 654 Sbjct: 651 KED 653 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 379 VRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718 D ++ + F + I + ++ + + G K + Sbjct: 499 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGLGKKAVVEYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 559 WTDDELNKLTQKIGKGYLLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 619 TTLMGDKVEPRRKWIESH 636 >gi|313126396|ref|YP_004036666.1| DNA gyrase subunit b [Halogeometricum borinquense DSM 11551] gi|312292761|gb|ADQ67221.1| DNA gyrase subunit B [Halogeometricum borinquense DSM 11551] Length = 637 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 287/593 (48%), Positives = 388/593 (65%), Gaps = 12/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + S Y A IQ+L+GL+AV+KRP+MYIG TD GLHH++YEV+DN+IDE+L GY Sbjct: 1 MS---RESEYGAGQIQVLEGLEAVRKRPAMYIGSTDS-RGLHHLVYEVVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V+++ DGS +V+DNGRGIP D H++ A EVIMT LHAGGKF+ KSY+VSGGL Sbjct: 57 CDEIGVSVHEDGSVSVTDNGRGIPVDTHEQYDRPAVEVIMTVLHAGGKFDNKSYQVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-LVVTGS--AGNDTGTEVTFLP 177 HGVGVSVVNALS WL++ IKR+G ++ F G D + DTGT + F P Sbjct: 117 HGVGVSVVNALSEWLEVEIKRDGALWRHRFDQGEPDQEAFERVRDLESDEDTGTTIRFKP 176 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 DIF +F++ TL++RLREL+FLNS V+ISL D + E +GGI FV YL+ Sbjct: 177 DGDIFETLEFDFTTLENRLRELAFLNSGVEISLADDDADEQSSFYF--EGGIREFVRYLN 234 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K L I + I +++AM+ + ++ F NNI ++GGTHL+G ++ALT Sbjct: 235 ETKSTLHDDVIYYDDEDEGIEVEVAMQATEELQGSIHAFANNINTREGGTHLTGFKTALT 294 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y + S+ G+D REG T+V+SIK PDP+F QTK KL +SEVR +VE Sbjct: 295 RVVNDYARSNNLLDDLD-SLKGEDIREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVE 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 S ++ L + EE+P A+ IV K ++A+ R AA++A +LTRRK L+ +LPGKLADC Sbjct: 354 SVTHEQLGTYFEENPGTAQAIVMKAVEAAKARRAAKKAEELTRRKSALESTALPGKLADC 413 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 RDP +SELF+VEGDSAGGSAKQGR R+ QAILP++GKILNVE+ R D++L + E+ L Sbjct: 414 QSRDPSESELFVVEGDSAGGSAKQGRDRKFQAILPIKGKILNVEKHRLDRILENNEVRAL 473 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA+G GIG++ FDI+ +RY +II+MTDADVDGAHIRTLLLT +R M LI G++Y Sbjct: 474 ITAIGAGIGEE-FDIDDVRYERIILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAA 532 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 +PPLY + EE + + + + G ++ L + Sbjct: 533 QPPLYRVRYRGETYDAMTEEERDRIVEEKCDGNPTQVQRFKGLGEMNPEQLWD 585 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT+NPD R L R+ I DA+ AD +F+ LMGD VEPR++FI+E Sbjct: 568 QVQRFKGLGEMNPEQLWDTTMNPDNRVLKRINIEDAAAADRMFNVLMGDAVEPRKQFIKE 627 Query: 795 NSLPSA-LDI 803 ++ + +DI Sbjct: 628 HATEAEWVDI 637 >gi|315925615|ref|ZP_07921825.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter alactolyticus ATCC 23263] gi|315621156|gb|EFV01127.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pseudoramibacter alactolyticus ATCC 23263] Length = 668 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 303/590 (51%), Positives = 408/590 (69%), Gaps = 4/590 (0%) Query: 1 MSDNIQNS-SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS+ + + Y AD IQ+L+GL+AVK+RP MYIG T G GLHH++YEV+DNAIDE+L G Sbjct: 30 MSETTKTNHEYGADQIQVLEGLEAVKRRPGMYIGST-GSQGLHHLVYEVVDNAIDEALAG 88 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I V+++ D + TV D+GRGIPT ++ +EG + E+ +T LHAGGKF YKVSGG Sbjct: 89 YCDKIIVSVDKDNAVTVMDDGRGIPTGINHKEGKTGVELALTVLHAGGKFGGGGYKVSGG 148 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS L + +K+ +Y +F +G + L V G N TGT++ F P Sbjct: 149 LHGVGVSVVNALSEVLTVEVKQNKKVYRQTFEHGNKTSELDVVG-TTNRTGTKIYFKPDP 207 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF ++YD L+HRLREL+FLN V I+L D+R + + Y GGI +++ Y++R+ Sbjct: 208 EIFDTTVYDYDVLEHRLRELAFLNKGVAITLKDERPGQEQTGEYHYAGGIRSYIEYMNRN 267 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K PL + + D +++LA ++ GY EN+ + NNI +GGTHL+G +SALTR Sbjct: 268 KDPLYPQITYYEKAMDEYALELAFQYTRGYQENIYSYANNIYTPEGGTHLNGFKSALTRT 327 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y K+ K++ +++ GDD REG T+V+SIK+ +P+F QTK KL + EV+ +VE+ Sbjct: 328 INNYARKAGLLKQNDKNLSGDDVREGLTAVISIKLLEPQFEGQTKTKLGNPEVKGIVETI 387 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VN+ LS +LEE+P AK IV+K + AS R AA+RAR++TRRK LD SLPGKLADC E Sbjct: 388 VNEELSNFLEENPNVAKAIVEKNISASHARMAAKRAREMTRRKSALDATSLPGKLADCRE 447 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP +SE+F+VEGDSAGGSAK GR QAILPLRGKILNVE+AR D+ML+S I +IT Sbjct: 448 KDPAQSEIFIVEGDSAGGSAKVGRDSRIQAILPLRGKILNVEKARLDRMLTSDTIKGMIT 507 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG+D FDI K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI +G++YI +P Sbjct: 508 AFGTGIGED-FDIEKARYHKIVIMTDADVDGAHIRTLLLTFFYRYMRGLIDHGYVYIAQP 566 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY ++ GK ++Y D+ L L ++ S G + L Sbjct: 567 PLYKVSWGKHVEYAYDDADLNRRLEDKDRSRVTLQRYKGLGEMDAEQLWE 616 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 61/74 (82%), Gaps = 1/74 (1%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 R +++QRYKGLGEM+A QLWETT+NPDTR++LRV I DA+ AD++F+ LMGD+V+PR+E Sbjct: 595 RSRVTLQRYKGLGEMDAEQLWETTMNPDTRTMLRVGIEDATYADEIFTMLMGDKVQPRKE 654 Query: 791 FIQENSLPS-ALDI 803 FI+ N+ LDI Sbjct: 655 FIERNAKKVQNLDI 668 >gi|332362817|gb|EGJ40611.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK355] Length = 649 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211] gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211] Length = 648 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 280/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS+ + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MSEENKELQAEDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFATHIQVFIEKDNSITVVDDGRGIPVDIQEKTGRPAVETVFTILHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVYKNGQIHFQEYRRGHVVADLEIIGET-DRTGTTVHFTP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKDYHYEGGIASYVQYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFENPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLLENPAVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNDPHETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + + L+ E SK I + +DD Sbjct: 538 AQPPIYGVKVGSEVKEYI--QPGANQEEELQLALERYSEGRSKPSIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 46/76 (60%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR S+QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 573 SEGRSKPSIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 632 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 633 RREFIEENAVYSTLDV 648 >gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1087] Length = 649 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYSRGQVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGIEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|257884846|ref|ZP_05664499.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501] gi|257820684|gb|EEV47832.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,501] Length = 681 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 272/665 (40%), Positives = 388/665 (58%), Gaps = 18/665 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G Y+ F N G D L G GT V FLP Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV+ Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + + + + L +K Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650 Query: 653 WHGSI 657 I Sbjct: 651 EDTEI 655 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 617 VTTLMGDKVEPRRKWIENH 635 >gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae] Length = 627 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 402/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+DNGRGIP + K+ G A EVIMT LHAGGKF YKVSGGLH V S Sbjct: 60 SIEEDNSIRVTDNGRGIPVGIQKKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHDVVAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G +YI +PPL+ I Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIYIAQPPLFKIQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +++ LE L + G ++ L Sbjct: 537 QGKKIQYAYNDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 87/442 (19%), Positives = 151/442 (34%), Gaps = 46/442 (10%) Query: 389 RDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 + R+ ++K + + + P E VEG G + Sbjct: 200 KLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSLQYN- 258 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 G N+ ++ G + K I+ DAD Sbjct: 259 ------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDAD 306 Query: 508 VD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESL 559 + G +R L + P+ G + + +++ + ++ Sbjct: 307 SNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNV 366 Query: 560 EDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 ++ + +++ K + + L + D D I + Y + Sbjct: 367 ARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDS 426 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI------NNSDILVK 665 A + ++ + + + RL+ I E + + DI Sbjct: 427 AGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFDIEKA 486 Query: 666 RIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 R + V + F + + I I L I G KI+ Sbjct: 487 RYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGNIY-IAQPPLFKIQQGKKIQYAY 545 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ I + + +QRYKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ Sbjct: 546 NDKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADET 605 Query: 777 FSRLMGDEVEPRREFIQENSLP 798 F LMGD+VEPRR FIQEN+ Sbjct: 606 FEILMGDKVEPRRNFIQENAKY 627 >gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius] Length = 640 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 294/592 (49%), Positives = 403/592 (68%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D + +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R+G I+ ++ G+ L G + TGT + F Sbjct: 120 HGVGSSVVNALSDTLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDT-DQTGTVIRFKADGT 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF +NY+TLQ R+REL+FLN ++I+L D+R E Y+GGI+++V ++ Sbjct: 179 IFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENVREDSYHYEGGIKSYVELINE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+PL + PI + +RD+I +++A+++N G+ N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPLHEEPIYVHQTRDDIEVEIALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y +S K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR +V+ Sbjct: 299 VLNNYGAQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDR 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L EHP A+IIV+K + AS R AA++AR++TRRK LDI+SLPGKLADCS Sbjct: 359 VFSELFERFLFEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP +SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR DK+LS+ EI ++ Sbjct: 419 SKDPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILSNNEIRQMV 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PPLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKEKLNPTPKWSIARYKGLGEMNADQLWE 589 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 40/68 (58%), Positives = 54/68 (79%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+ RYKGLGEMNA QLWETT+NP+ R++L+V + DA +AD F LMGD VE RR+FI++ Sbjct: 572 SIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIED 631 Query: 795 NSLPSALD 802 N++ + LD Sbjct: 632 NAVYANLD 639 >gi|317128925|ref|YP_004095207.1| DNA topoisomerase IV subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315473873|gb|ADU30476.1| DNA topoisomerase IV, B subunit [Bacillus cellulosilyticus DSM 2522] Length = 658 Score = 578 bits (1491), Expect = e-162, Method: Composition-based stats. Identities = 274/662 (41%), Positives = 396/662 (59%), Gaps = 22/662 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Q Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH+++E++DN++DE+L GY Sbjct: 1 MSMK-QPYEYNDDSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVFEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT++ D S +V DNGRG PT +H G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GDEITVTIHKDESISVKDNGRGYPTGMHS-TGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G IY+ F + G L V GS TGT V F P Sbjct: 118 HGVGASVVNALSEWLEVTIHRDGKIYQQRFEDGGKPVTTLEVIGSTK-KTGTTVHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDR 238 IFS + YDTL RLRE +FL ++I L+D + + + + Y G+EAFV YL+ Sbjct: 177 SIFSTTTYQYDTLAERLREAAFLLKGLKIELVDARPNKDNDKEVFQYDTGLEAFVEYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L + QG++D+I +D A ++ND + EN+L F NN+ KDGGTH G ++A+TR Sbjct: 237 EKEVLHP-VVSFQGTQDDIEVDFAFQYNDAFTENMLSFVNNVRTKDGGTHELGAKTAVTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 I + K K+ +++ G+D REGFT+++S+++P+ +F QTK KL + RS V Sbjct: 296 IINEHGRKLQLLKERDKNLDGNDIREGFTAIVSVRVPEDKLQFEGQTKGKLGTPVARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ LS +LEE+P + ++KK + A+ R+AAR+AR+ + +K A L GKL Sbjct: 356 DSIVSEKLSFFLEENPDLSNRLIKKAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++PK++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ ++ ++EI Sbjct: 416 TPAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I A+G +G D F + + Y K+IIMTDAD DGAHI+ LLLTFF+R M L+ G + Sbjct: 476 RTIIYAIGGDVGAD-FQLEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 YI PPLY ++ + + ++Y DE+ L++ + I+ + G + L Sbjct: 535 YIALPPLYKVSKGSGKKEKIEYAWDEDGLQEAIQKIGKGYTIQRY-KGLGEMDATQLWET 593 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 +D + + + + + LN E Sbjct: 594 -----TMDPETRTLVRVKIDDITRAERRVATLMGDKVEPRRKWIERNVQFGLNEETNILE 648 Query: 651 KS 652 Sbjct: 649 NE 650 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + + ++ ++ L SKN RN + Sbjct: 380 KAVKAAQAREAARKAREDARSGKKNKRKDAMLSGKLTPAQSKNPKRNELYLVEGDSAGGS 439 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + ++ ++ + I + N D Sbjct: 440 AKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRTIIYAIGGDVGADFQLEDINYDK 499 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---G 718 ++ + F + + + R+ + + G K KI Sbjct: 500 VIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRVYIALPPLYKVSKGSGKKEKIEYAWD 559 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + I IG KG ++QRYKGLGEM+A+QLWETT++P+TR+L+RVKI D ++A+ + Sbjct: 560 EDGLQEAIQKIG-KGYTIQRYKGLGEMDATQLWETTMDPETRTLVRVKIDDITRAERRVA 618 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I+ N Sbjct: 619 TLMGDKVEPRRKWIERN 635 >gi|51317702|gb|AAT99972.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317704|gb|AAT99973.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317706|gb|AAT99974.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317708|gb|AAT99975.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317710|gb|AAT99976.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317712|gb|AAT99977.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317714|gb|AAT99978.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317716|gb|AAT99979.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317718|gb|AAT99980.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317720|gb|AAT99981.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317722|gb|AAT99982.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317724|gb|AAT99983.1| DNA gyrase subunit B [Borrelia hermsii] gi|112031371|gb|ABH88158.1| GyrB [Borrelia hermsii] gi|112031375|gb|ABH88160.1| GyrB [Borrelia hermsii] gi|164564666|gb|ABY61085.1| DNA gyrase B [Borrelia hermsii] gi|164564676|gb|ABY61090.1| DNA gyrase B [Borrelia hermsii] Length = 634 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 275/584 (47%), Positives = 406/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIP D+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSITVNDNGRGIPIDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L + + R+G +++ ++ GI + + + G + GT+VTFL ++IF +++ Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADTEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKRS + + + +++GGI+AFV Y+ + K + P Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+GS D++ + + ++W +GY +++L F NNI ++GGTH++G +S + ++ S Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD S+ DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRVV 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +++ LE I+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 DDNLLEVDTILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY + Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKVKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 Y D+ E +L + + G ++ L Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737 F F + I + + + + + G++ +S+Q Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKVKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + +KI DA QA+ +F LMGD+VEPRREFI+ N+L Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEHNAL 627 Query: 798 P-SALDI 803 LD+ Sbjct: 628 DVVNLDV 634 >gi|295090282|emb|CBK76389.1| DNA gyrase subunit B [Clostridium cf. saccharolyticum K10] gi|295115477|emb|CBL36324.1| DNA gyrase subunit B [butyrate-producing bacterium SM4/1] Length = 636 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 297/584 (50%), Positives = 401/584 (68%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G+ I V Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNSVDEALAGFCSEIDVQ 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV+DNGRGIP D+ K+ GI A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INADNSITVTDNGRGIPVDIQKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186 VNALS WL++ I ++G+IY + G + PL + G + GT VTFLP +IF Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYERGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I L D R + +E T Y+GGI+ FV+YL+R + L Sbjct: 182 YDYDTLKVRLRETAFLTKNLKIILRDDREEK-QEKTFHYEGGIKEFVTYLNRGGESLYAP 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G RDN+ +++AM+ ND Y EN+ F NNI +GGTHLSG ++ALT Y K Sbjct: 241 VIYCEGVRDNVYVEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALTNTFNDYARK 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K+++ S+ G+D REG T+++S+K+ +P+F QTK+KL ++E R+ V V++ L+ Sbjct: 301 NKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVAGIVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AKII +K + A R AARRAR++TRRK LD +LPGKLADCS+++P+ E Sbjct: 361 FLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADCSDKNPENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAK+ RS+ NQAILPLRGKILNVE+AR DK+ ++ EI ++ITA GTGI Sbjct: 421 IYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSMITAFGTGIH 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY I + Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 K + Y + L L + G + L Sbjct: 540 NKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 16/181 (8%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK- 690 RL+ I +E G + DI R + + ++G+ I + + Sbjct: 456 KARLDKIYANAEIRSMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIY 515 Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGE 744 R I++ Y L I +I + L++I S + + +QRYKGLGE Sbjct: 516 RFMPELIKQGYVYLAQPPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGE 575 Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALD 802 M+A QLWETT++P+ R LLRV + + + + D F+ LMGD+VEPRREFI+ N+ LD Sbjct: 576 MDAEQLWETTMDPERRILLRVTMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKYGTLD 635 Query: 803 I 803 I Sbjct: 636 I 636 >gi|261368839|ref|ZP_05981722.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176] gi|282569109|gb|EFB74644.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176] Length = 662 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 270/605 (44%), Positives = 381/605 (62%), Gaps = 23/605 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + +Y IQ+L+GL+AV+KRP MYIG T G SGLHH++YE++DN+IDE+L GY Sbjct: 12 ETATDHAYGGAQIQVLEGLEAVRKRPGMYIGST-GPSGLHHLVYEIVDNSIDEALAGYCT 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 I VT+ VSDNGRGIP D+ + GI A V+ T LHAGGKF YKV+GGL Sbjct: 71 HIEVTIKPGNIIQVSDNGRGIPVDIQPKLGIPAVTVVYTVLHAGGKFGGEDSGYKVAGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL +R++R+G YE SF G D L GSA TGT V F P + Sbjct: 131 HGVGASVVNALSEWLTVRVRRDGAEYEQSFQRGKPDGDLKKIGSAA-STGTLVIFKPDPE 189 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------EPREITMFYKG 227 +F + Y+TL RLRE +FLN+ V+I+L D+R + R TM Y+G Sbjct: 190 MFQETTQYRYETLLKRLREEAFLNAGVRITLTDERPESDRPAEEKGPENDGRSETMCYEG 249 Query: 228 GIEAFVS--YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND-GYHENVLCFTNNIPQKD 284 GI +FVS R PL + ++G ++A+++ D Y+E +L F NN+ + Sbjct: 250 GIRSFVSYLCERRDLTPLTPQVMYMKGEGQGAVAEVALQYYDNSYNELILSFANNVHTPE 309 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH G + ALTR + Y K ++ G D REG +V+S+K+ + +F QTK Sbjct: 310 GGTHEEGFKLALTRVLNEYGRAKGILKDKDENLSGPDAREGIIAVVSVKLQEAQFEGQTK 369 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL ++ ++ +V V L+ + EE+P AK I++K A+ R AA++ARDL RRK Sbjct: 370 AKLGNTFIKGLVNGVVYKALTEYFEENPAVAKAILEKATQAARARAAAKKARDLVRRKSA 429 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ +PGKLADC E+DP K+ELF+VEGDSAGGSAK GR QAILPL GK+LNVE+AR Sbjct: 430 LESNRMPGKLADCHEKDPSKTELFIVEGDSAGGSAKMGRDSNIQAILPLWGKMLNVEKAR 489 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 D++ + ++ ++TALGTGIG D FDI+K+RYHKI IM DADVDG+HI TL+LTFFFR Sbjct: 490 ADRIYGNDKLMPVVTALGTGIG-DEFDISKVRYHKIFIMADADVDGSHICTLMLTFFFRY 548 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 M LI +G++Y+ +PPL+ + +G++++Y +++ ++ +++ + G ++ Sbjct: 549 MRPLIEHGYVYVAQPPLFKLQKGQTVKYAYNDDEMK--VLSAEMPGAKVNRYKGLGEMNP 606 Query: 585 NDLRN 589 + L Sbjct: 607 DQLWE 611 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 56/71 (78%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 G + RYKGLGEMN QLWETT+NPD R ++++KI DA +AD+ FS LMG++VEPRR+FI Sbjct: 592 GAKVNRYKGLGEMNPDQLWETTMNPDNRVIVQIKIEDAERADEAFSILMGEQVEPRRQFI 651 Query: 793 QENSLPSALDI 803 +N+ + LD+ Sbjct: 652 VKNAKFANLDV 662 >gi|257878031|ref|ZP_05657684.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933] gi|257881183|ref|ZP_05660836.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502] gi|257889770|ref|ZP_05669423.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410] gi|257892293|ref|ZP_05671946.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408] gi|258616477|ref|ZP_05714247.1| DNA topoisomerase IV subunit B [Enterococcus faecium DO] gi|260559081|ref|ZP_05831267.1| gram positive topoisomerase IV [Enterococcus faecium C68] gi|257812259|gb|EEV41017.1| gram positive topoisomerase IV [Enterococcus faecium 1,230,933] gi|257816841|gb|EEV44169.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,502] gi|257826130|gb|EEV52756.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,410] gi|257828672|gb|EEV55279.1| gram positive topoisomerase IV [Enterococcus faecium 1,231,408] gi|260074838|gb|EEW63154.1| gram positive topoisomerase IV [Enterococcus faecium C68] Length = 681 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 272/665 (40%), Positives = 388/665 (58%), Gaps = 18/665 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G Y+ F N G D L G GT V FLP Sbjct: 118 HGVGASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV+ Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + + + + L +K Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650 Query: 653 WHGSI 657 I Sbjct: 651 EDTEI 655 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 617 VTTLMGDKVEPRRKWIENH 635 >gi|320451329|ref|YP_004203425.1| DNA gyrase subunit B [Thermus scotoductus SA-01] gi|320151498|gb|ADW22876.1| DNA gyrase, subunit B [Thermus scotoductus SA-01] Length = 635 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 276/586 (47%), Positives = 368/586 (62%), Gaps = 8/586 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I TL Sbjct: 2 SYDASAIKVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEIVTTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV DNGRGIP DL EEG A EVI T LH+GGKF+ +YKVSGGLHGVG SVV Sbjct: 61 NPDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFDSSAYKVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187 NALS W + + REG + ++F G + PL V G A TGT VTF P IF Q F Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLAVVGPAPKGKTGTRVTFKPDPLIFGNQAF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + ++ RLRE+S+L + +++ D RE KGG+ +F L ++ L + P Sbjct: 181 DPSKIRARLREVSYLVAGLRLVFKDLIHG--REDVYLDKGGVASFAKALAEGEELLYEKP 238 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 ++G + +++ + GY+ +L + N IP +DGGTHL+ +SA +R + Y +K+ Sbjct: 239 FLLKGQEGEVEVEVGLIHTKGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +K+ GDD EG +V+S+K+P P+F QTK KL++ E S V V + Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGSAVSQVVYEKFLEI 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE+P AK I +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P+++EL Sbjct: 359 LEENPRIAKTIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPEEAEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG- 486 F+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ ++ A+G GIG Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVAAIGVGIGG 478 Query: 487 ---QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 + FD+ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +PPLY Sbjct: 479 TGDEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYR 538 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + GK ++Y+ +E L L G ++ L Sbjct: 539 LQVGKKVEYLYSDEELAARLKELEGKSYEVQRFKGLGEMNPEQLWE 584 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 71/155 (45%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + ++ V + F + I + + L Sbjct: 481 DEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRLQ 540 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 + L + + K +QR+KGLGEMN QLWETT+NP+ R L +V++ Sbjct: 541 VGKKVEYLYSDEELAARLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKKVELQ 600 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +A +LF +LMG EV PRREFI+E++ + LDI Sbjct: 601 DALEASELFEKLMGQEVAPRREFIEEHARYAELDI 635 >gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1057] Length = 649 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQAKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|154503045|ref|ZP_02040105.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149] gi|153796286|gb|EDN78706.1| hypothetical protein RUMGNA_00867 [Ruminococcus gnavus ATCC 29149] Length = 645 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 299/585 (51%), Positives = 393/585 (67%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 9 DAEYGADQIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGYCDTINV 67 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP L+ + GI A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 68 SINPDNSVTVVDNGRGIPVGLNHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G L V G + TGT+VTFLP +IF Sbjct: 128 VVNALSVWLEVEIYNEGKIYKQRYERGKTMYSLKVVGECDPDKTGTKVTFLPDGEIFEET 187 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F YD L+ RLRE++FL ++I L D R E RE T Y+GGI+ FV+YL++ K PL Sbjct: 188 VFEYDVLKQRLREMAFLTKGLKIILQDLREEEIREHTFHYEGGIKEFVTYLNKSKTPLYD 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D + +++AM+ ND Y +N F NNI +GGTH+ G R ALT+ Y Sbjct: 248 QIIYCEGEKDGVVVEMAMQHNDSYSDNTYGFVNNITTPEGGTHIEGFRKALTKTFNEYAR 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ ++ GDD REG T+++S+K+ +P+F QTK+KL +SE R V++ V+ L Sbjct: 308 KNKLLKDNEPNLSGDDIREGLTAIVSVKIGEPQFEGQTKQKLGNSEARGAVDNIVSTQLE 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK V+K L A R+AAR+ARDLTRRK L+ SLPGKLADCS+++P+ Sbjct: 368 IFLEQNPSVAKQTVEKSLMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKNPENC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 428 EIYIVEGDSAGGSAKTARQRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 488 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYKLE 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y +E L + L G + + L Sbjct: 547 KNKKVWYAYSDEELNEILTEVGRDSNNKIQRYKGLGEMDADQLWE 591 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R + I E Y+ + Sbjct: 485 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIREGYVYLAQPPLYK 544 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + + +GR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 545 LEKNKKVWYAYSDEELNEILTEVGRDSNNKIQRYKGLGEMDADQLWETTMDPEHRVLLRV 604 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 605 TMDDETSSELDLTFTTLMGDKVEPRREFIEENARFVKNLDI 645 >gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK72] Length = 649 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 280/627 (44%), Positives = 409/627 (65%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQSKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + ++ + +L SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYIQPGANQEEELQTAL--ARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|62865972|gb|AAY17139.1| DNA gyrase B [Borrelia parkeri] gi|62865974|gb|AAY17140.1| DNA gyrase B [Borrelia parkeri] gi|62865976|gb|AAY17141.1| DNA gyrase B [Borrelia parkeri] gi|62865978|gb|AAY17142.1| DNA gyrase B [Borrelia parkeri] gi|62865980|gb|AAY17143.1| DNA gyrase B [Borrelia parkeri] Length = 634 Score = 578 bits (1490), Expect = e-162, Method: Composition-based stats. Identities = 275/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+GN ++ ++ GI + + + G + + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKR + R + +++GGI+AFV ++ + K + Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKTIQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G+ D++ + + ++W +GY +N+L F NNI ++GGTH++G +S + ++ + S Sbjct: 240 FIEGTCDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V++ L + Sbjct: 300 VSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 ++ LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 GDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G++ Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY I Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 S+ Y D+ E +L + + G ++ L Sbjct: 539 SVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736 F F + I + + + L I + + + + G++ IS+ Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISL 566 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT+NP TR + ++I DA QA+++F LMGD+VEPRREFI++N+ Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626 Query: 797 LP-SALDI 803 L LD+ Sbjct: 627 LDVVNLDV 634 >gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK160] Length = 649 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + + A + Sbjct: 596 LWETTMNPEHRLMARVSVNDAAEADKI 622 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVNDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|322373420|ref|ZP_08047956.1| DNA gyrase, B subunit [Streptococcus sp. C150] gi|321278462|gb|EFX55531.1| DNA gyrase, B subunit [Streptococcus sp. C150] Length = 650 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 399/628 (63%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D ++N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTDELKNFEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP + ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIQVFIEPDNSITVVDDGRGIPVGIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ + G+I+ + G++ + L + G GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLAIIGDTE-KHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF F++ L R++EL+FLN ++IS+ DKR +E Y+GGI ++V Sbjct: 179 TPDPEIFQETTEFDFGKLAKRIQELAFLNKGLRISITDKREGLEQEKHYHYEGGITSYVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y++ +K + PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 YINENKDVIFDEPIYTDGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K ++ GDD REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKILKDKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ LS +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPILEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + + + E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPVNRLMARVSVDDAAEADKI 623 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 44/74 (59%), Positives = 58/74 (78%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P R + RV + DA++AD +F LMGD+VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPVNRLMARVSVDDAAEADKIFDMLMGDKVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36] gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis VMC66] gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36] gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis VMC66] gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK353] gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK405] gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK678] gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK115] gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK150] gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1] gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK408] gi|332359588|gb|EGJ37406.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK49] Length = 649 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK330] Length = 649 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIVSYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSDVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|213964047|ref|ZP_03392290.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno] gi|213953329|gb|EEB64668.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno] Length = 658 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 284/602 (47%), Positives = 391/602 (64%), Gaps = 17/602 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + + Y AD+IQ L+G++ V+ RPSMYIGD G GLHH++YEVLDN+IDE+L GY D Sbjct: 8 EQLNPADYSADNIQSLEGMEHVRMRPSMYIGDV-GPRGLHHLVYEVLDNSIDEALAGYCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG Sbjct: 67 TISVTINEDNSITVEDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS LK + R+G I+E + G+ P+ G + GT+VTF P IF Sbjct: 127 VGVSCVNALSDHLKATVYRDGKIWEQEYQRGVALYPVKQVGDT-DKRGTKVTFHPDELIF 185 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237 + YDTL R+REL++LN + I+L D R+ + + + G++ FV +LD Sbjct: 186 EQTTEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSENGLKEFVKFLD 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++ P++ I ++G ++ I +++AM +ND Y+EN+ + NNI +GGTHL G R LT Sbjct: 246 GNRMPIIGGVIAMEGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305 Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R + +Y +KS +K + GDD REG T+V+S+K+ +P+F QTK KL + E Sbjct: 306 RTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V S V V L +LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ LP Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCSE DP K ELFLVEGDSAGG+AKQGR+++NQAILPLRGKILNVE+A K+ S Sbjct: 426 GKLADCSEEDPTKCELFLVEGDSAGGTAKQGRNKDNQAILPLRGKILNVEKAMQHKVFDS 485 Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EI + TALG +G + +KLRYHK+IIM DADVDG+HI TL+LTFFFR M Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI NG +YI PPLY + S + + ++ + G ++ + L Sbjct: 546 LIENGHVYIATPPLYLVKSKSSKREEYAWNDKQRDALSAEMGNVTIQRYKGLGEMNDHQL 605 Query: 588 RN 589 + Sbjct: 606 WD 607 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEMN QLW+TT+NP R+L +V I +A++AD +FS LMGDEV PRREFI+ Sbjct: 589 VTIQRYKGLGEMNDHQLWDTTMNPQHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648 Query: 794 ENSLPSALD 802 +N+ + +D Sbjct: 649 KNAKYAKID 657 >gi|164686442|ref|ZP_02210470.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM 16795] gi|164604453|gb|EDQ97918.1| hypothetical protein CLOBAR_00007 [Clostridium bartlettii DSM 16795] Length = 633 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 297/583 (50%), Positives = 399/583 (68%), Gaps = 3/583 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A+ IQ+L+GL+AV+ RP MYIG T G GLHH++YE++DN+IDE+L+GY D I V Sbjct: 2 KQEYGANQIQVLEGLEAVRLRPGMYIGST-GPRGLHHLVYEIVDNSIDEALQGYCDRIYV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS T D+GRGIP + H + G S E ++T LHAGGKF YKVSGGLHGVG+S Sbjct: 61 CINEDGSVTTKDDGRGIPVETHPKTGKSTLETVLTILHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVN LS WL + R G IY S+ GI D+ L + G + + TGT + F+P + IF Sbjct: 121 VVNGLSEWLVAEVYRNGKIYRQSYKKGITDSELEIVGESDH-TGTIIQFMPDATIFDDIV 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y TL+ RLREL+FLN V+I DKR + ++ Y GGI FV YL+ K P+ ++ Sbjct: 180 FDYKTLETRLRELAFLNKGVRIVFEDKRPGQEQKKEFLYDGGIREFVEYLNSTKTPIHEN 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + I + +++A+++ DGY EN+L F NNI +GG HL+G ++ALT+ + Y ++ Sbjct: 240 VVYIDKKIQDCMVEIAIQYTDGYSENILSFANNIDTHEGGAHLAGFKAALTKTVNEYAKR 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K++ ++ G+D REG T+V+S+K+PDP+F QTK KL ++ +R +V++ + L A Sbjct: 300 NKLLKENDANLSGEDIREGLTAVVSVKLPDPQFEGQTKTKLGNTRMRGIVDAVTVEELGA 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LEE+P ++IIV K L A R+AA+RAR+LTRRK VL+ SLPGKLADC+E+DP KSE Sbjct: 360 FLEENPQTSRIIVDKALRAQRAREAAKRARELTRRKTVLESTSLPGKLADCAEKDPAKSE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +FLVEGDSAGGSAKQGR R QAILPLRGKILNVE++R D++LSS EI +ITA G G+G Sbjct: 420 IFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKSRLDRILSSDEIKNMITAYGCGVG 479 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFFFR M LI NG++YI +PPLY + + Sbjct: 480 ND-FDLEKARYHKIVIMTDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQPPLYKVKK 538 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K YV ++ LE L S G ++ L Sbjct: 539 QKKEYYVYSDKQLEALLEEIGKSGIELQRYKGLGEMNPEQLWE 581 Score = 193 bits (491), Expect = 9e-47, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 3/198 (1%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 + + + + + N E + + + ++ N + + +V Sbjct: 438 RYTQAIL--PLRGKILNVEKSRLDRILSSDEIKNMITAYGCGVGNDFDLEKARYHKIVIM 495 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F F I + + + + + + L + Sbjct: 496 TDADVDGAHIRTLLLTFFFRYMRPLIDNGYVYIAQPPLYKVKKQKKEYYVYSDKQLEALL 555 Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 IG+ GI +QRYKGLGEMN QLWETT+NP+TR+LL+V I DA++AD +FS LMGD+V Sbjct: 556 EEIGKSGIELQRYKGLGEMNPEQLWETTMNPETRTLLQVTIDDATEADRIFSMLMGDKVG 615 Query: 787 PRREFIQENSLPS-ALDI 803 PR+EFI+EN+ LDI Sbjct: 616 PRKEFIEENAEFVKNLDI 633 >gi|7437446|pir||S70991 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Mycobacterium smegmatis gi|1321898|emb|CAA63253.1| gyrB [Mycobacterium smegmatis] Length = 706 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 273/674 (40%), Positives = 384/674 (56%), Gaps = 36/674 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ G+A Sbjct: 36 KNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGFAT 94 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V ++ DGS V D+GRGIP ++H G+ +V+MT+LHAGGKF+ ++Y VSGGLHG Sbjct: 95 RVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSGGLHG 153 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L+ + R+G + + + L G +TGT + F +IF Sbjct: 154 VGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWADPEIF 211 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 D+N++T+ RL+E++FLN + I L D+R Sbjct: 212 ETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEKAAEA 271 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + Y GG+ +V +++R K P+ QS I G +++AM+WN GY E+ Sbjct: 272 TGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAGYSES 331 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G R+ALT + Y + K ++ GDD REG +V+S+ Sbjct: 332 VHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAAVISV 391 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L W E +P EAK +V K + ++ R AA Sbjct: 392 KVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQARIAA 451 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILP Sbjct: 452 RKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILP 511 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ ++ITALGTGI D FDI+KLRYHKI++M DADVDG H Sbjct: 512 LRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADVDGQH 570 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE 571 I TLLLT FR M L+ NG +++ +PPLY + +S ++ + + L + + Sbjct: 571 ISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGRAAGK 630 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 D + + A D E Sbjct: 631 KINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVEAR 690 Query: 632 VSLASKLANRLNFI 645 S ++ A + F+ Sbjct: 691 RSFITRNAKDVRFL 704 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 621 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 679 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 680 SILMGEDVEARRSFITRNAKDVRFLDV 706 >gi|331086961|ref|ZP_08336037.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409622|gb|EGG89061.1| DNA gyrase subunit B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 638 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 294/585 (50%), Positives = 396/585 (67%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 STEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALGGYCDTIFV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G L V G + TGT+VTFLP ++IF Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y+ L+ R RE++FL +++I L D+R E E T Y+GGI+ FV YL++ K PL + Sbjct: 181 EFDYNILKQRFREMAFLTKNLKIVLADERPEERIEKTFHYEGGIKEFVQYLNKSKTPLYE 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D +++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Y Sbjct: 241 QIIYCEGQKDGVAVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+S ++ L Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAVDSVLSTQLE 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK++++K + A R+AAR+ARDLTRRK L+ SLPGKLADCSE+D K Sbjct: 361 IFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLADCSEKDASKC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKLE 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y +E L L G + L Sbjct: 540 KNKKVWYAYSDEELNKILQEVGRDGNNKIQRYKGLGEMDAEQLWE 584 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G + DI R + + ++G+ I + + R I++ Y L Sbjct: 478 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYK 537 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ L+ I GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 538 LEKNKKVWYAYSDEELNKILQEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRVLLRV 597 Query: 766 KITDA--SQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + S+ D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 598 TMDEESSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 638 >gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey] Length = 627 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 285/585 (48%), Positives = 403/585 (68%), Gaps = 6/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYD IQ+L+GL+AV+KRP MYI T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENSYDESQIQVLEGLEAVRKRPGMYIASTS-GKGLHHLVWEIVDNSIDEALAGYCDQINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ S V+DNGRGIP + ++ G A +VIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEYNSIRVTDNGRGIPVGIQEKMGRPAVKVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L++ + REG I+ + GI L V G + TGT F P +IF Sbjct: 120 VVNALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDT-DQTGTITRFKPDPEIFQETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 VYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ ++GS+D I +++++++N+GY N+ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVEGSKDGIQVEVSLQYNEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ IV+K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D FDI K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I +G++YI +PPL+ + Sbjct: 478 GGD-FDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQ 536 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY +E+ LE L + G ++ L Sbjct: 537 QGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 581 Score = 169 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 88/461 (19%), Positives = 156/461 (33%), Gaps = 46/461 (9%) Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD-CSERDPKKSELF 428 E A + + ++ R+ ++K + + + P E Sbjct: 181 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 240 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 VEG G + G N+ ++ G Sbjct: 241 YVEGSKDGIQVEVSLQYN-------EGYTNNIYS------FTNNIHTYEGGTHEVGFKTA 287 Query: 489 SFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYI------IKPP 540 + K I+ DAD + G +R L + P+ G + Sbjct: 288 LTRVINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTI 347 Query: 541 LYGITRGKSLQYVKDEESLEDYLIN--------QSLSEEIELFCDSKGVISKNDLRNFID 592 + +++ + ++ ++ + +++ K + + L + Sbjct: 348 TESVFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLA 407 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 D D I + Y + A + ++ + + + RL+ I E Sbjct: 408 DCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVR 467 Query: 653 WHGSI------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEE 699 + + DI R + V + F + + I I Sbjct: 468 TIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIY- 526 Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNP 757 L + G KI+ L+ I + + +QRYKGLGEMN +QLWETT++P Sbjct: 527 IAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDP 586 Query: 758 DTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 + RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 587 EVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 627 >gi|307069626|ref|YP_003878103.1| putative DNA gyrase subunit B [Candidatus Zinderia insecticola CARI] gi|306482886|gb|ADM89757.1| putative DNA gyrase, B subunit [Candidatus Zinderia insecticola CARI] Length = 817 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 301/826 (36%), Positives = 480/826 (58%), Gaps = 50/826 (6%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y+ +SI++L L+A+KKRP MYIG T+ SGLHH+I+EV+DN+IDE L G+ ++I + Sbjct: 5 NKYNENSIKVLNSLEAIKKRPDMYIGSTNDGSGLHHLIFEVIDNSIDEFLSGFCNLINIK 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEG----ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + + ++ DNGRGIP ++ +++ SAAE++MT LH+G KFN KSYK+S GLHGV Sbjct: 65 IYKNNYISIYDNGRGIPINIKEDDNNIPLRSAAEIVMTELHSGSKFNNKSYKISSGLHGV 124 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILD------------NPLVVTGSAGNDTGT 171 G+S +NALS +KL I + Y + F GIL + + + G GT Sbjct: 125 GLSCLNALSKRVKLIIYKNKKKYFLEFKFGILQNRKIYIKNNIKYSKVKIIGKTK-KRGT 183 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 ++ FL + IF +YD + +L+ LSFLN ++I++ID R + ++I GI Sbjct: 184 KIKFLLNKKIFKNIYPSYDIIYEKLKTLSFLNKKLKINIIDFRIKKKKKIKF--NNGIIN 241 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 ++ ++ +KK + + I+++ ++I I + + WN +LC+TNNI QK+GG HL Sbjct: 242 YLKNININKKIIGEKIIKMKKLINSIEISIFILWNFSIKSKILCYTNNIIQKNGGIHLIT 301 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 L++++TR I Y K KK+ + GDD REG +LS+KM +P+F+SQ K+KL+S E Sbjct: 302 LKTSITRIINKY-IKKNKFKKNNIEISGDDIREGMNCILSLKMSNPKFNSQIKDKLISEE 360 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR +E + + L+ +L+++ L +K I KK++++++ R + + + + + L Sbjct: 361 VRLPIEELIFNKLNIFLKKNILFSKNICKKIINSAISRIKIKNNKMIISKLFSKNNIYLS 420 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 KL++C E++PK SEL++VEGDSAGGSAKQ R+R+ QAILPLRGK+LNVE++ F+K++ S Sbjct: 421 SKLSECQEKNPKISELYIVEGDSAGGSAKQARNRKFQAILPLRGKVLNVEKSNFEKIIKS 480 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 ++I TL+T LG I ++ F I KL+Y+ IIIMTDAD+DGAHIRTLLLT F+R +P LI+ Sbjct: 481 KQITTLLTILGLKIEKNKFYIKKLKYNNIIIMTDADIDGAHIRTLLLTLFYRYIPELINK 540 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 ++YI +PPLY I + K Y K++ Y++N + + + + K + Sbjct: 541 QYVYIAQPPLYKIKKKKESIYFKNDIEFNKYILNFFSKKINFISKKNIKINKKINFLYLF 600 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + KI K+I + K I ++ G+ S+ + L +N + Sbjct: 601 NKYNKIQKIISKTFNKI-KNIIFYCLLKGIKINISNYKSCKKTIKNLNKTINNKNINIKY 659 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + I K+ +L+ +S+F KY I++ ++ + L Sbjct: 660 KIKNNKYTIYIKYKKNINN-----LLKINSLFLKNKKYNEIYN-------ISKIFLYLKN 707 Query: 712 DKIKITGP-----------------CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETT 754 KI + +L+ +K I++QRYKGLGEMN++QLW+TT Sbjct: 708 KKIYVYDLDKKKKKIFYKKINIKNFKKILNYFLIKFKKNINLQRYKGLGEMNSNQLWKTT 767 Query: 755 LNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 +NP TRSLL+VKI + + LF+ LMG+ ++ R+ FI+ N L Sbjct: 768 MNPKTRSLLKVKIKNIKYTNKLFNDLMGNNIKARKIFIEFNYLYLN 813 >gi|293556775|ref|ZP_06675338.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039] gi|291601107|gb|EFF31396.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1039] Length = 692 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|293568154|ref|ZP_06679490.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071] gi|291589144|gb|EFF20956.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1071] Length = 692 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|283797181|ref|ZP_06346334.1| DNA gyrase, B subunit [Clostridium sp. M62/1] gi|291075139|gb|EFE12503.1| DNA gyrase, B subunit [Clostridium sp. M62/1] Length = 636 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 297/584 (50%), Positives = 401/584 (68%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G+ I V Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTS-IRGLHHLVYEIVDNSVDEALAGFCSEIDVQ 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV+DNGRGIP D+ K+ GI A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INADNSITVTDNGRGIPVDIQKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186 VNALS WL++ I ++G+IY + G + PL + G + GT VTFLP +IF Sbjct: 122 VNALSEWLEVDIYKDGHIYNQRYEKGKVMYPLTIKGDCPADKHGTRVTFLPDKEIFEETV 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I L D R + +E T Y+GGI+ FV+YL+R + L Sbjct: 182 YDYDTLKVRLRETAFLTKNLKIILRDDREEK-QEKTFHYEGGIKEFVTYLNRGGESLYAP 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G RDN+ +++AM+ ND Y EN+ F NNI +GGTHLSG ++ALT Y K Sbjct: 241 VIYCEGVRDNVYVEVAMQHNDSYTENIYTFVNNINTPEGGTHLSGFKTALTNTFNDYARK 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K+++ S+ G+D REG T+++S+K+ +P+F QTK+KL ++E R+ V V++ L+ Sbjct: 301 NKLLKENEPSLSGEDIREGLTAIISVKLEEPQFEGQTKQKLGNTEARAAVAGIVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AKII +K + A R AARRAR++TRRK LD +LPGKLADCS+++P+ E Sbjct: 361 FLEQNPGVAKIISEKSILAQRARAAARRAREMTRRKSALDGLALPGKLADCSDKNPENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAK+ RS+ NQAILPLRGKILNVE+AR DK+ ++ EI ++ITA GTGI Sbjct: 421 IYLVEGDSAGGSAKEARSKANQAILPLRGKILNVEKARLDKIYANAEIRSMITAFGTGIH 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY I + Sbjct: 481 ED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFIYRFMPELIKQGYVYLAQPPLYKIEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 K + Y + L L + G + L Sbjct: 540 NKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 16/181 (8%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK- 690 RL+ I +E G + DI R + + ++G+ I + + Sbjct: 456 KARLDKIYANAEIRSMITAFGTGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFIY 515 Query: 691 RIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGE 744 R I++ Y L I +I + L++I S + + +QRYKGLGE Sbjct: 516 RFMPELIKQGYVYLAQPPLYKIEKNKRIWYAYSDAELNSILSEIGRDQNNKIQRYKGLGE 575 Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPSALD 802 M+A QLWETT++P+ R LLRV + + + + D F+ LMGD+VEPRREFI+ N+ LD Sbjct: 576 MDAEQLWETTMDPERRILLRVTMDEETTSEVDLTFTTLMGDQVEPRREFIEANAKYGTLD 635 Query: 803 I 803 I Sbjct: 636 I 636 >gi|332366316|gb|EGJ44068.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1059] Length = 649 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 278/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G +Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGLVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|332361540|gb|EGJ39344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1056] Length = 649 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 406/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQKDIQAQKYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311] gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066] gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9] gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311] gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066] gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9] gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03] Length = 650 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 280/628 (44%), Positives = 404/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D ++N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTDELKNLEEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIKVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ + G+I+ + G++ + L + G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGHIHFQEYKRGVVVDDLRIIGETE-EHGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF F++ L R +EL+FLN ++IS+IDKR +E Y+GGI ++V Sbjct: 179 IPDPEIFQETTEFDFGKLAKRFQELAFLNKGLRISIIDKREGLEQEKHYHYEGGITSYVK 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Y++ +K + PI G D IS+++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 YINENKDVIFDEPIYTYGEMDGISVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y ++ K+ ++ GDD REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYARQNKILKEKDDNLTGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ LS +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALSRFLLENPAIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +P+ +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNNPEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RYHK++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGSE-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMHPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + D + E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGADQEEKLRAALENYSVGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLLARVSVDDAAEADKI 623 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 59/74 (79%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P+ R L RV + DA++AD +F LMGD+VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLLARVSVDDAAEADKIFDMLMGDKVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|332668538|ref|YP_004451545.1| DNA gyrase subunit B [Cellulomonas fimi ATCC 484] gi|332337575|gb|AEE44158.1| DNA gyrase, B subunit [Cellulomonas fimi ATCC 484] Length = 682 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 273/613 (44%), Positives = 380/613 (61%), Gaps = 33/613 (5%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S YDA +I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY Sbjct: 10 STPNGAGGYDASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYC 68 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VTL DG V+DNGRGIP ++H EG EV+MT LHAGGKF Y VSGGLH Sbjct: 69 DTIEVTLLADGGVRVADNGRGIPVEMHPTEGKPTLEVVMTILHAGGKFGGAGYAVSGGLH 128 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG+SVVNALSS ++ +KR+G ++M F + G + G A +TGT TF S Sbjct: 129 GVGISVVNALSSRVESVVKRDGYTWQMDFEDGGKPVGSIRQ-GEATQETGTSQTFWADST 187 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------SP 216 IF D++++TL+ R ++ +FLN ++I+L D+R +P Sbjct: 188 IFETIDYDFETLRSRFQQTAFLNKGLRITLTDERPQHTGTEDEVTDADRTVDGDEPVDTP 247 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHEN 272 + R ++ Y GG+ +V++L+ KK I I IS+D+A++W Y E+ Sbjct: 248 QHRTVSYKYDGGLVDYVTHLNAAKKVELVHPEVIEITAEDTDRRISVDIALQWTSAYSES 307 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G R+A+T I Y + K+ ++ GDD REG T+V+S+ Sbjct: 308 VHTFANTISTTEGGTHEEGFRAAMTSLINRYAKDKNLLKEKDDNLTGDDIREGLTAVISV 367 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++E ++ V+ VN+ L+ WL+ HP EA+ +++K + A+ R AA Sbjct: 368 KLGEPQFEGQTKTKLGNTEAKTFVQKVVNERLADWLDSHPNEARDVIRKSIQAAAARMAA 427 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+ TRRKG+L+ +PGKL DC +P + E+F+VEGDSAGGSA +GR+ QAILP Sbjct: 428 RKAREATRRKGLLESGGMPGKLKDCQSNNPAECEVFIVEGDSAGGSAVRGRNPRTQAILP 487 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 +RGKILNVERAR D+ L +QE+ LITA GTGIG+D FD+ KLRYHKI++M DADVDG H Sbjct: 488 IRGKILNVERARLDRALGNQEVQALITAFGTGIGED-FDLAKLRYHKIVLMADADVDGKH 546 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEE 571 I TLLLT FR MP LI G +Y+ +PPLY I YV + + Y+ + + Sbjct: 547 ICTLLLTLLFRYMPELITQGHVYLAQPPLYRIKWSNADHDYVYSDRERDAYIKEGQANGK 606 Query: 572 IELFCDSKGVISK 584 ++ Sbjct: 607 RLPKDNAIQRYKG 619 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ S+LWETT++P+ R+LL+V + +A+ AD++FS LMG++VE RR FIQ N Sbjct: 614 IQRYKGLGEMDYSELWETTMSPEHRTLLQVSLDEAAAADEIFSVLMGEDVESRRSFIQRN 673 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 674 AKDVRFLDI 682 >gi|150387859|ref|YP_001317908.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF] gi|149947721|gb|ABR46249.1| DNA gyrase, B subunit [Alkaliphilus metalliredigens QYMF] Length = 635 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 287/592 (48%), Positives = 406/592 (68%), Gaps = 5/592 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + IQ Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 1 MENKIQ--EYGAEQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D+I VT+ D S V DNGRGIP + H + G S E +MT LHAGGKF YKVSGGL Sbjct: 58 CDVIDVTIYQDNSIKVVDNGRGIPIETHPQTGKSTLETVMTVLHAGGKFGGGGYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS ++++ ++++G +Y+ + GI + G T +TF S+ Sbjct: 118 HGVGISVVNALSEYVEVEVRKDGKLYKQRYERGIPITDVQEVGETTETG-TTITFKADSE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF + Y TL++RLRE++FLN ++I+L D R E E + Y GGI+ FV +L+R++ Sbjct: 177 IFEEILYVYTTLENRLREMAFLNKGIKITLRDLREEEVMESSFRYDGGIQEFVMHLNRNR 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L+ I + ++ +++A+++ Y EN+ + N I +GGTHLSG ++ LTR I Sbjct: 237 EALIDKVIYFEKQKEGSVVEVALQYTGAYTENIFSYANTINTHEGGTHLSGFKAGLTRVI 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K+ + +++G+D REG T+++S+KM DP+F QTK KL +SE++ +VES Sbjct: 297 NEYARKNGILKEKEINLLGEDIREGLTAIISVKMADPQFEGQTKTKLGNSEMKGIVESST 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L A+LEE+P EAKII++K L A R+AA++AR+LTRRKG L+ +LPGKLADC+E+ Sbjct: 357 SQYLEAFLEENPHEAKIIIEKSLRAQRAREAAKKARELTRRKGALENTALPGKLADCAEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE+++VEG+SAGGSAKQGR R QAILPLRGKILNVE++R D++L S EI +ITA Sbjct: 417 DPALSEIYIVEGNSAGGSAKQGRDRATQAILPLRGKILNVEKSRLDRILGSAEIRNMITA 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG FDI K+RYHKI+IMTDADVDGAHIRTLLLTFFFR M LI G++YI +PP Sbjct: 477 FGTGIG-IEFDIEKVRYHKIVIMTDADVDGAHIRTLLLTFFFRYMKPLIELGYVYIAQPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LY + +GK Y +E ++ ++ S +I+ + + + ++ Sbjct: 536 LYKLKKGKVENYAYSDEEMQKIIVQMGGSADIQRYKGLGEMNPEQLWDTTMN 587 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 2/184 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++++ N + + +V V + Sbjct: 453 ILNVEKSRLDRILGSAEIRNMITAFGTGIGIEFDIEKVRYHKIVIMTDADVDGAHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + L + + I +G +QRYK Sbjct: 513 LTFFFRYMKPLIELGYVYIAQPPLYKLKKGKVENYAYSDEEMQKIIVQMGG-SADIQRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLW+TT+NP+TR+ L+V I DA+ ADD+F+ LMGD+VEPRR+FI++NS Sbjct: 572 GLGEMNPEQLWDTTMNPETRTFLQVSIEDAAGADDIFNTLMGDKVEPRRQFIEQNSKYVT 631 Query: 800 ALDI 803 LDI Sbjct: 632 NLDI 635 >gi|126179353|ref|YP_001047318.1| DNA gyrase, B subunit [Methanoculleus marisnigri JR1] gi|125862147|gb|ABN57336.1| DNA gyrase subunit B [Methanoculleus marisnigri JR1] Length = 656 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 292/642 (45%), Positives = 404/642 (62%), Gaps = 34/642 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D +YDA I +L+GL V++RP+MYIG T+ GLHH++YEV+DNA+DE+L G+ Sbjct: 1 MTD-----TYDASHITVLEGLRPVRERPAMYIGSTES-RGLHHLVYEVVDNAVDEALAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D+I VT+N DGS +V DNGRGIP DL + G SA E+++T LHAGGKF++ +Y+VSGGL Sbjct: 55 CDLIQVTVNRDGSVSVDDNGRGIPVDLMPQYGKSALEIVLTVLHAGGKFDKNTYQVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND------------ 168 HGVGVSVVNALSSWL + ++GN+Y M F G++ PL ++ Sbjct: 115 HGVGVSVVNALSSWLDATVFKDGNVYAMQFRQGLVAKPLASRPETEHEMEARYEERYGAR 174 Query: 169 ----------TGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 GT +TF P IF +F+YD L HRLREL++LNS + I L D+R+ + Sbjct: 175 DGQPLDYERLRGTRITFQPDRSIFETVEFDYDVLDHRLRELAYLNSGLTIVLRDERTGDV 234 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ--GSRDNISIDLAMRWNDGYHENVLCF 276 + GI FV++L K+ L I Q S + +++A+++N+ Y E + + Sbjct: 235 VTYCF--EDGIRQFVAHLGEGKESLHDDIIYFQKRDSESKVEVEVALQYNNSYSETIYTY 292 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N++ ++GGTHL G RSALTR I S ++ K + V G+D REG V+S ++ + Sbjct: 293 VNSVNTREGGTHLEGFRSALTRAINSAAHRNNLLKNNDAQVKGEDVREGLACVISTRVAN 352 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK +L +S VR +V+S V L+ + EEHP + +V K + A+ R+AAR AR Sbjct: 353 PQFEGQTKMRLGNSNVRGIVDSLVYSSLTEYFEEHPKTLQTVVDKAMAAARAREAARTAR 412 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 +L RRK L+ LPGKLADC ERDP KSEL++VEGDSAGGSAKQGR R+ QAILPLRGK Sbjct: 413 ELARRKSTLESTGLPGKLADCQERDPAKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGK 472 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVE+A K+L + EI LI+A+GTG+G DSFD + RYH+II+MTDADVDGAHIRTL Sbjct: 473 ILNVEKASEHKILKNAEIQALISAIGTGVG-DSFDAERARYHRIILMTDADVDGAHIRTL 531 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLTFF+R M L+ NG++YI +PPLY + +G+ QYV EE + + L Sbjct: 532 LLTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKGVSIQRY 591 Query: 577 DS-KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617 + + +D A +I K +K + E+ + Sbjct: 592 KGLGEMNAGQLWSTTMDPANRILKQVKIEDAAYANEIFEKLM 633 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 1/184 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E + +++ ++ I S+ ++ V + Sbjct: 473 ILNVEKASEHKILKNAEIQALISAIGTGVGDSFDAERARYHRIILMTDADVDGAHIRTLL 532 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + + I + + + + + + + G KG+S+QRYK Sbjct: 533 LTFFYRYMVGLVENGYIYIAQPPLYRVAKGRQEQYVYREEEMREILAEWGEKGVSIQRYK 592 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMNA QLW TT++P R L +VKI DA+ A+++F +LMG+ V+ RR+FI+ ++ Sbjct: 593 GLGEMNAGQLWSTTMDPANRILKQVKIEDAAYANEIFEKLMGENVDARRDFIRRHAKEVS 652 Query: 800 ALDI 803 LD+ Sbjct: 653 NLDV 656 >gi|62865970|gb|AAY17138.1| DNA gyrase B [Borrelia parkeri] Length = 634 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 275/584 (47%), Positives = 409/584 (70%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L++ + R+GN ++ ++ GI + + + G + + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLEVVVSRDGNFFKQTYSRGIPTSGVEIVGVSS-NRGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ DKR + R + +++GGI+AFV ++ + K + Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDKRLGKERFLEFYFEGGIKAFVDFITNNSKTIQSESY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+G+ D++ + + ++W +GY +N+L F NNI ++GGTH++G +S + ++ + S Sbjct: 240 FIEGTYDDVIVSVGLKWTEGYSDNILSFVNNINTREGGTHVAGFKSGFLKAMSEAFKDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD ++ DD +EG T+V+SIK+P+P+F QTK KL +S ++ +VE+ V++ L + Sbjct: 300 VSKKDVPNLTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYIKKIVETIVHNELLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 ++ LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 GDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPVEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G++ Sbjct: 420 IVEGDSAGGSAKMGRDRFYQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKN 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY I Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIDNGHVYIAMPPLYKIKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 S+ Y D+ E +L + + G ++ L Sbjct: 539 SVHYFYDDSEKEIFLSSIETGKRDKISLQRYKGLGEMNPTQLWE 582 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKNFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRK-GISM 736 F F + I + + + L I + + + + G++ IS+ Sbjct: 508 LTFFFRYMRELIDNGHVY-IAMPPLYKIKYENSVHYFYDDSEKEIFLSSIETGKRDKISL 566 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN +QLWETT+NP TR + ++I DA QA+++F LMGD+VEPRREFI++N+ Sbjct: 567 QRYKGLGEMNPTQLWETTMNPATRKMKLIEIDDAIQAENIFVTLMGDDVEPRREFIEQNA 626 Query: 797 LP-SALDI 803 L LD+ Sbjct: 627 LDVVNLDV 634 >gi|293570285|ref|ZP_06681354.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980] gi|291609692|gb|EFF38953.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E980] Length = 692 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDA 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|325570905|ref|ZP_08146554.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus casseliflavus ATCC 12755] gi|325156309|gb|EGC68492.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus casseliflavus ATCC 12755] Length = 677 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 271/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V DNGRG+P H GI EVI T LHAGGKF Q YK SGGL Sbjct: 60 GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL++ I R+G Y+ SF + G L G TGT VTF P Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D+R EP Y+ GI+ FV YL+ Sbjct: 179 TIFSTTKFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L Q + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+ V+ Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L +L+E+ ++++V+K + A R+AAR+AR+ T +K + L GKL Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + ++Y ++ L + G ++ + L Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGKGY-MLQRYKGLGEMNADQLWET- 594 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + S + L +K Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILDK 650 Query: 652 SWH 654 Sbjct: 651 KED 653 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 40/64 (62%), Positives = 55/64 (85%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ + LMGD+VEPRR++ Sbjct: 573 KGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKW 632 Query: 792 IQEN 795 I+ + Sbjct: 633 IESH 636 >gi|293563433|ref|ZP_06677882.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162] gi|314938043|ref|ZP_07845353.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04] gi|314941971|ref|ZP_07848832.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C] gi|314948776|ref|ZP_07852148.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082] gi|314951794|ref|ZP_07854833.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A] gi|314991799|ref|ZP_07857257.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B] gi|314995840|ref|ZP_07860927.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01] gi|291604694|gb|EFF34179.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1162] gi|313589944|gb|EFR68789.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a01] gi|313593610|gb|EFR72455.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133B] gi|313596073|gb|EFR74918.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133A] gi|313599223|gb|EFR78068.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133C] gi|313642618|gb|EFS07198.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0133a04] gi|313644842|gb|EFS09422.1| DNA topoisomerase IV, B subunit [Enterococcus faecium TX0082] Length = 692 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLIVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|261207615|ref|ZP_05922300.1| gram positive topoisomerase IV [Enterococcus faecium TC 6] gi|260077998|gb|EEW65704.1| gram positive topoisomerase IV [Enterococcus faecium TC 6] Length = 681 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 271/665 (40%), Positives = 387/665 (58%), Gaps = 18/665 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G Y+ F N G D L G GT V FLP Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D R P + Y+ GI+ FV YL+ Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEVPVKEIFHYEEGIKEFVDYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV+ Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + + + + L +K Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650 Query: 653 WHGSI 657 I Sbjct: 651 EDTEI 655 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 617 VTTLMGDKVEPRRKWIENH 635 >gi|257867817|ref|ZP_05647470.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30] gi|257874144|ref|ZP_05653797.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10] gi|257801900|gb|EEV30803.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC30] gi|257808308|gb|EEV37130.1| topoisomerase IV B subunit [Enterococcus casseliflavus EC10] Length = 677 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 270/663 (40%), Positives = 383/663 (57%), Gaps = 19/663 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MGLAKKTTEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V DNGRG+P H GI EVI T LHAGGKF Q YK SGGL Sbjct: 60 GNEIDVTIHKDNSISVRDNGRGMPVGTHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL++ I R+G Y+ SF + G L G TGT VTF P Sbjct: 119 HGVGASVVNALSSWLEVVIVRDGIEYKQSFKDGGKPAGTLKKIGKTRKPTGTTVTFKPDD 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D+R EP Y+ GI+ FV YL+ Sbjct: 179 TIFSATKFSYEILAERLRESAFLLKGVKISLTDERGEEPIHEVFLYEEGIKEFVDYLNEE 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L Q + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 239 KDTLTQ-VVYFSGTKEAIEVELAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+ V+ Sbjct: 298 FNEYARKVNLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARNAVD 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L +L+E+ ++++V+K + A R+AAR+AR+ T +K + L GKL Sbjct: 358 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRTGKKRKKGESLLSGKLT 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 418 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 477 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 478 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 536 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + ++Y ++ L + G ++ + L Sbjct: 537 IALPPLYKVSKGLGKKAVVEYAWTDDELSKLTQKIGKGY-MLQRYKGLGEMNADQLWET- 594 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + + + L +K Sbjct: 595 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFSLEEDGSILDK 650 Query: 652 SWH 654 Sbjct: 651 KED 653 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 40/64 (62%), Positives = 55/64 (85%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ + LMGD+VEPRR++ Sbjct: 573 KGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKW 632 Query: 792 IQEN 795 I+ + Sbjct: 633 IENH 636 >gi|153814924|ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756] gi|317500436|ref|ZP_07958660.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|331089557|ref|ZP_08338456.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847955|gb|EDK24873.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC 27756] gi|316898191|gb|EFV20238.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA] gi|330404925|gb|EGG84463.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium 3_1_46FAA] Length = 640 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 254/620 (40%), Positives = 361/620 (58%), Gaps = 14/620 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G+ I V Sbjct: 4 NNTYDAGSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNSVDEHLAGFCTEIRV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG+ TV+DNGRGIP D+H++ GISAA ++ T LHAGGKF+ +YK SGGLHGVG S Sbjct: 63 VLEKDGTATVTDNGRGIPVDMHQK-GISAARLVFTTLHAGGKFDDSAYKTSGGLHGVGSS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDI 181 VVNALS+++ ++I R+G +Y + G+ L G TGT + FLP I Sbjct: 122 VVNALSTYMDVKISRDGAVYHDRYERGVPVIELENGLLPKIGKTK-KTGTTINFLPDDTI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F + ++ RL E ++LN + I DKR + I GI F+ L++ K+ Sbjct: 181 FEKTKFRAEEVKSRLHETAYLNPELTIIFEDKRGDQTEHIEYHEPEGIIGFIRDLNKKKE 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L P+ +G D I ++ A ++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 241 ALH-EPVYFKGEADGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 299 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + V Sbjct: 300 QYAREIGILKEKDTNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKAVGKVAG 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D + + + + K ++ A+ +R +A+ K S GKLA+C RD Sbjct: 360 DEIVLYFDRNLDVLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 419 PKKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINAF 478 Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 479 GCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAM 538 Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + +Y+ D+++LE Y ++ + + ++ +D ++ Sbjct: 539 PPLYKAMPKSGEEEYLYDDKALEKYRRTHKGPFTLQRYKGLGEMDAEQLWETTLDPKRRL 598 Query: 598 DKLIKDFYPNHDKTFIEQAV 617 KL++ E + Sbjct: 599 LKLVEIEDARMASGVTEMLM 618 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 43/74 (58%), Positives = 52/74 (70%), Gaps = 3/74 (4%) Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKITDASQADDLFSRLMGDEVEPRR 789 KG ++QRYKGLGEM+A QLWETTL+P R LL+ V+I DA A + LMG EV PRR Sbjct: 568 KGPFTLQRYKGLGEMDAEQLWETTLDP-KRRLLKLVEIEDARMASGVTEMLMGTEVPPRR 626 Query: 790 EFIQENSLPSALDI 803 FI EN+ + LDI Sbjct: 627 AFIYENATEAELDI 640 >gi|50379869|gb|AAT76295.1| DNA gyrase subunit B [Fusobacterium canifelinum] Length = 522 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 249/526 (47%), Positives = 355/526 (67%), Gaps = 6/526 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEEIM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V + + V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CNKIEVKILPENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179 HGVGVSVVNALS WL++ +++ G +Y + G + + + GS + GT V F Sbjct: 117 HGVGVSVVNALSEWLEVEVRKNGVVYYQKYHRGKPEEDVKIIGSCDEGEHGTIVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF +NY TL +RL+EL++LN + I L D R E +E + GGI F++ + + Sbjct: 177 DIFETLIYNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + +++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 EATIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG ++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 A GT IG+ FDI+KLRY KII+MTDADVDGAHIRTL+LTF +R M Sbjct: 477 AFGTSIGET-FDISKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521 >gi|257898812|ref|ZP_05678465.1| gram positive topoisomerase IV [Enterococcus faecium Com15] gi|257836724|gb|EEV61798.1| gram positive topoisomerase IV [Enterococcus faecium Com15] Length = 681 Score = 577 bits (1487), Expect = e-162, Method: Composition-based stats. Identities = 271/665 (40%), Positives = 387/665 (58%), Gaps = 18/665 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKV-NNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GSEIDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G Y+ F N G D L G GT V FLP Sbjct: 118 HGVGASVVNALSKWLTVTIVRDGIEYQQKFKNGGKPDGTLKKIGKTRKANGTIVHFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+ L RLRE +FL V+ISL D R E + Y+ GI+ FV YL+ Sbjct: 178 TIFSTTKFSYEILAERLRESAFLLKGVKISLSDLRGEESVKEVFHYEEGIKEFVDYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 238 KDTLTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKS 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV+ Sbjct: 297 YNEYARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVISEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 536 IALPPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-- 593 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + + + + L +K Sbjct: 594 ---TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKK 650 Query: 653 WHGSI 657 I Sbjct: 651 EDAEI 655 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 378 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 498 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 557 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 558 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 616 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 617 VTTLMGDKVEPRRKWIENH 635 >gi|253681222|ref|ZP_04862020.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873] gi|253562460|gb|EES91911.1| DNA gyrase, B subunit [Clostridium botulinum D str. 1873] Length = 636 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 296/617 (47%), Positives = 421/617 (68%), Gaps = 11/617 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L G+ I Sbjct: 3 KKQVYDESQIQVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEIVDNSIDEALAGFCQNIK 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ D S TV D+GRG+P +H + EVIMT LHAGGKF YKVSGGLHGVG Sbjct: 62 VYIHKDNSVTVKDDGRGMPVGIHPKMKRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS + K+ ++REG+I+ + G + + L + G + ++ GT V F P +IF Sbjct: 122 SVVNALSKYCKVEVRREGHIWMQEYKKGKVASELEIIGDS-DEKGTLVYFEPDDEIFEEV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL HRLREL+FLN ++I+LID+R E ++ Y+GGI++FVSYL+R+K+ L + Sbjct: 181 QFDYDTLAHRLRELAFLNKGIRITLIDEREEEKKQE-FHYEGGIKSFVSYLNRNKQTLHE 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++G++D+ +++A+++ND Y++N+ F NNI +GGTHL+G +SALTR + Y Sbjct: 240 DPIYVEGNKDDYLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRALNDYAR 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K+ +++ GDD REG T+V+S+K+ DP+F QTK KL ++EVR +V+S V + +S Sbjct: 300 RYGYLKEADKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVFERVS 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P AK +++K L A+ R+AA++AR+LTRRK VL+ +LPGKLADCS +DP + Sbjct: 360 EFLEENPNTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSEC 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+ R DK+L+S++I +ITA G GI Sbjct: 420 EIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M L+ G +YI +PPLY + Sbjct: 480 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVK 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GK ++Y + L+ L D I + +D D + + Sbjct: 539 KGKIIRYSYSDNELQQVLTEIGGK-------DKNTEIQRYKGLGEMDATQLWDTTMNPEH 591 Query: 606 PNHDKTFIEQAVISGVF 622 K I+ A+ + Sbjct: 592 RTLVKVTIDDAMRADEI 608 Score = 170 bits (431), Expect = 9e-40, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + + + I + D + + +E+ + + N E + Sbjct: 410 DCSSKDPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIR 469 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + + + + ++ V + F + Sbjct: 470 AMITAFGAGIGKDFDIEKIRYHR-----------IIIMTDADVDGAHIATLLLTFFYRYM 518 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISMQRYKGLGEM 745 + + + L + G I+ + + L + + G+ K +QRYKGLGEM Sbjct: 519 RELVEGGHVY-IAQPPLYQVKKGKIIRYSYSDNELQQVLTEIGGKDKNTEIQRYKGLGEM 577 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 +A+QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 578 DATQLWDTTMNPEHRTLVKVTIDDAMRADEIFTILMGDKVEPRREFIEENAKRVVNLDI 636 >gi|319440154|ref|ZP_07989310.1| DNA gyrase subunit B [Corynebacterium variabile DSM 44702] Length = 686 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 270/648 (41%), Positives = 381/648 (58%), Gaps = 43/648 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD I IL+GL+AV+KRP MYIG T E GLHH+I+EV+DN++DE++ G+AD + V Sbjct: 16 SGDYGADQITILEGLEAVRKRPGMYIGSTS-ERGLHHLIWEVVDNSVDEAMAGFADHVEV 74 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL DGS VSDNGRGIP ++H G +V+MT LHAGGKF+ ++Y VSGGLHGVG+S Sbjct: 75 TLKDDGSVQVSDNGRGIPVEMHP-TGRPTVQVVMTELHAGGKFDSQAYAVSGGLHGVGIS 133 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ ++ I+R+G ++ F + I L A +GT F +IF Sbjct: 134 VVNALSTRVETEIRRDGYLWHQVFDHSIP-EELEQVKKA-RGSGTTQRFWADPEIFETTT 191 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------------- 214 +N+DT+ RL+E++FLN + I+L D+R Sbjct: 192 YNFDTVSRRLQEMAFLNKGLTITLTDERRQVIEQVEDLEDAAADEAAAPKTADEEAEEQK 251 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 +P+ R Y G++ +V +L++ K P+ + I ++ D+ +++A++WN GY ++ Sbjct: 252 KDAPKVRTKVFHYPDGLKDYVDHLNKSKTPVHPTVIDLEVKGDDHEVEIALQWNSGYSQS 311 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G R+ALT + Y K + ++ GDDCREG +V+S+ Sbjct: 312 VHTFANTINTVEGGTHEEGFRAALTSLMNRYARDHKMLKDKEPNLTGDDCREGLAAVISV 371 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 ++ DP+F QTK KL +SE++ V+ N+ ++ W + +P EAK IV K + ++ R AA Sbjct: 372 RVGDPQFEGQTKTKLGNSEIKGFVQKATNEHVADWFDANPAEAKAIVNKAVSSAQARVAA 431 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+ARDL RRK D+ LPGKLADC +DP KSE+++VEGDSAGGSAK GR QAILP Sbjct: 432 RKARDLVRRKSATDLGGLPGKLADCRSKDPVKSEIYIVEGDSAGGSAKSGRDSMFQAILP 491 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINKLRYHKI++M DADVDG H Sbjct: 492 LRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIVLMADADVDGQH 550 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEE 571 I TLLLT +R M LI G +Y+ PPLY + GK + + + L + Sbjct: 551 IATLLLTLLYRFMRPLIEEGHVYLAMPPLYKLKWGKGEPGFAFSDAERDAQLAEGLAAGR 610 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 D ++ + + K +E A + Sbjct: 611 KINKDDGIQRYKG---LGEMNAKELWETTMDPQDRILKKVTLEDAADA 655 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 + GRK I+ +QRYKGLGEMNA +LWETT++P R L +V + DA+ AD+ F+ LMG Sbjct: 606 LAAGRK-INKDDGIQRYKGLGEMNAKELWETTMDPQDRILKKVTLEDAADADETFAVLMG 664 Query: 783 DEVEPRREFIQENSLPSA-LDI 803 D+V RR FI N+ LD+ Sbjct: 665 DDVVARRSFITRNAKDVRFLDV 686 >gi|154483927|ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC 27560] gi|149735418|gb|EDM51304.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC 27560] Length = 643 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 293/592 (49%), Positives = 404/592 (68%), Gaps = 6/592 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M +N + Y AD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G Sbjct: 1 MGNNTNVENEYGADQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I V +N D S TV D+GRGIPTD++ + G A EV+ T LHAGGKF YKVSGG Sbjct: 60 YCDTIDVQINEDNSITVRDDGRGIPTDINTKTGKPAVEVVFTVLHAGGKFGGGGYKVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPS 178 LHGVG SVVNALS WL++++ R G ++ + G + PL V G + TGTEV FLP Sbjct: 120 LHGVGASVVNALSKWLEVKVCRGGKVHYQKYEYGKVVEPLTVIGDCNPDFTGTEVKFLPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++Y TL+ RLRE +FL +++I L D R +P E T Y+GGI+ FV+YL++ Sbjct: 180 DTIFEDTVYDYKTLEIRLRETAFLTKNLKIVLRDVREEKPIEKTFHYEGGIKEFVNYLNK 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L I +G+ +N+ +++AM+ ND Y EN L F NNI +GGT + G + A+T+ Sbjct: 240 GKQELYDDVIYCEGTVNNVYVEVAMQHNDAYTENTLSFVNNINTPEGGTQVEGFKRAITK 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 +Y +++ K+++ ++ GDD REG T+++S+K+ DP+F QTK+KL +SE R+ VE Sbjct: 300 TFNNYAKQNKILKENEENLSGDDFREGLTAIISVKIEDPQFEGQTKQKLGNSEARAAVEG 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +++ L+ +LE++P AKII +K + A RDAAR+AR+ T RK L +A+LPGKLADCS Sbjct: 360 VMSEQLTYYLEQNPAIAKIICEKAVLAKRARDAARKAREAT-RKTALSVAALPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +++P+ E+F+VEGDSAGGSAK+ R+R QAILPLRGKILNVE+AR DK++ + EI T+I Sbjct: 419 DKNPENCEIFIVEGDSAGGSAKKARTRATQAILPLRGKILNVEKARIDKIMDNAEIRTMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGI Q+ FDI KLRY+KIIIMTDADVDGAHI TL+LTFF+R MP LI +G +Y+ Sbjct: 479 TAFGTGI-QEDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFFYRFMPELIKDGHVYLAM 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 PPLY +TR K Y ++ L L + G + + L Sbjct: 538 PPLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNKIQRYKGLGEMDASQLWE 589 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRS 761 + + N L + IGR + +QRYKGLGEM+ASQLWETT++P+TR Sbjct: 539 PLYQVTRNKKNYYAYSDDELNQILTEIGRDNQNKIQRYKGLGEMDASQLWETTMDPNTRI 598 Query: 762 LLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L +VKI + S+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 599 LKQVKIDEDKLSEMDQTFTILMGDDVEPRREFIEANAKFVKNLDI 643 >gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R] gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316] gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909] gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R] gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316] gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus agalactiae ATCC 13813] Length = 650 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 273/628 (43%), Positives = 406/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEETKNMEQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFAGHIKVYIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +++ + G ++ + G++ N L + G + +GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKR + E Y+GGI ++V Sbjct: 179 TPDPEIFTETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGIGSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K+ + ++PI G D IS+++AM++ GY E V+ F NNI +GGTH G R+ Sbjct: 239 FINENKEVIFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ + +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS + + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNNAEMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K+RY K++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ + S + + + + SK + + +DD Sbjct: 538 YIAQPPIYGV-KVGSEIKAYIQPGVNQ-EEELRQALDTYSSGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVSVDDAAEADKI 623 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I + I G + LDT +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 548 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 605 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+ N++ S LDI Sbjct: 606 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 650 >gi|297564812|ref|YP_003683784.1| DNA gyrase subunit B [Meiothermus silvanus DSM 9946] gi|296849261|gb|ADH62276.1| DNA gyrase, B subunit [Meiothermus silvanus DSM 9946] Length = 645 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 280/647 (43%), Positives = 397/647 (61%), Gaps = 16/647 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++ + YDA +I++LKGL+ V+ RP+MYIG T G HH+ E+LDN++DE+L GY Sbjct: 1 MSTDLA-AQYDASAIKVLKGLEGVRHRPAMYIGGTQA-DGYHHLFKEILDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I TL+ DGS TV DNGRGIP D+ EEG A E+I T LHAGGKF + +YKVSGGL Sbjct: 59 ATEIITTLHPDGSITVEDNGRGIPVDIMPEEGKPAVEIIYTVLHAGGKFEEGAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNAL+ + ++ + R+G Y + F G + PL G+A GT VTFLP + Sbjct: 119 HGVGASVVNALAEYTRVEVFRDGKHYLIEFSRGEVTKPLTQIGTAKGKRGTRVTFLPDAT 178 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F +++RLRE+SFL + +++ D+ + F KGG+ +F +L Sbjct: 179 IFDPGLKFEASRIRNRLREVSFLVAGLRLVFKDEVHQKE--EVFFDKGGVASFAKFLAEG 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L + P+ +QG D +S+++ + GY ++ + N IP KDGGTH+SG ++A TR Sbjct: 237 EEALYEKPVLLQGEVDVVSVEVGLIHTKGYSNQLVSYANMIPTKDGGTHISGFKTAYTRA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y +K+ K GDD EG + V+S+K+P P+F QTK KL++ E + V Sbjct: 297 INAYAKKAG-LVKGDLEPTGDDLLEGVSCVISVKIPQPQFEGQTKGKLLNPEAGTAVSKV 355 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ WLEE+P AK+I +K A+ R+AAR+AR+L RRK L+ LPGKLADC Sbjct: 356 VYEKLTDWLEENPRAAKLIYEKAQRAAQAREAARKARELVRRKDALESDELPGKLADCQS 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP ++ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ ++ Sbjct: 416 EDPAEAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLGKALKNAEVRAMVA 475 Query: 480 ALGTGI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 A+G GI + F++ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M ++ G+LY Sbjct: 476 AIGAGIDSNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILEGGYLY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISKNDLRN 589 I +PPLY + + +QY+ ++E+L++ + S E++ F + + Sbjct: 536 IAQPPLYRLQVGGGKNAKVQYLFNDEALKEAIAKLPERTSYEVQRFKGLGEMNPEQLWET 595 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D A ++ K + + E + V E N A Sbjct: 596 TMDPAKRVLKQVTMEDALYANEIFEALMGQDVAPRREFIEENARFAQ 642 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 5/163 (3%) Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 + E ++ ++ V + F + + + + Sbjct: 483 SNVEEAHFNLEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPILEGGYLYIAQPPLY 542 Query: 706 SLICNGDK----IKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTR 760 L G K + +L + I + + +QR+KGLGEMN QLWETT++P R Sbjct: 543 RLQVGGGKNAKVQYLFNDEALKEAIAKLPERTSYEVQRFKGLGEMNPEQLWETTMDPAKR 602 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 L +V + DA A+++F LMG +V PRREFI+EN+ + LD+ Sbjct: 603 VLKQVTMEDALYANEIFEALMGQDVAPRREFIEENARFAQLDV 645 >gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470] gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470] Length = 649 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 299/642 (46%), Positives = 406/642 (63%), Gaps = 10/642 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 S Y A I++L+GL+AV+ RP MYIG T GLHH++YEV+DN+IDE+L G+ Sbjct: 15 ENGKSDYGAKDIRVLEGLEAVRLRPGMYIGSTSA-RGLHHLVYEVVDNSIDEALAGFCTH 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VTLN DGSCT++DNGRGIPT LH E G A EV++T LHAGGKF Y +SGGLHGV Sbjct: 74 IEVTLNDDGSCTITDNGRGIPTGLH-ETGKPAMEVVLTVLHAGGKFGGDGYPISGGLHGV 132 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+SVV ALS W + +KREG+ +EM G++ + G T+VTF P +IF Sbjct: 133 GISVVTALSEWTTVTVKREGHFHEMKLARGVVTQHMKTFGETTETG-TQVTFKPDGEIFK 191 Query: 184 V-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 DF+YDTL+ R+REL+FLN + I+L D R + Y GGI F+ +L+ K Sbjct: 192 EGTDFDYDTLKVRMRELAFLNKGLTITLTDVRDGATHQDVFCYAGGIVEFIKFLNEGKDL 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D + +D+AM++ GY E++ F NNI +GG HL+G R+ALTR I Sbjct: 252 VDPGVISFEGEKDRVIVDIAMQYQAGYSESMYTFVNNINTVEGGMHLTGFRNALTRTIND 311 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K ++ ++ GDD REG T V+S+K+P+P+F QTK KL + +V+ +V++ V+D Sbjct: 312 YARSNNLLKPNEENLSGDDVREGLTCVISVKVPNPQFEGQTKTKLGNQDVKGIVDTIVSD 371 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 GL +LEEHP EAK I+ K + A+ R+AARRAR+LTRRK L+++SLPGKLADCSE+DP Sbjct: 372 GLRTYLEEHPAEAKEIISKSITANRAREAARRARELTRRKNALEVSSLPGKLADCSEKDP 431 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K +E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+L+S I T+ITA G Sbjct: 432 KFTEIYIVEGDSAGGSAKSGRDRRYQAILPLRGKILNVEKARLDKVLNSDAIRTMITAFG 491 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG+ + FDI KLRY+KIIIMTDADVDGAHIRTLLLTFF+R M LI G +YI +PPLY Sbjct: 492 TGV-AEDFDIKKLRYYKIIIMTDADVDGAHIRTLLLTFFYRYMKPLITEGHVYIAQPPLY 550 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +G+ Y D+ + L G ++ L + ++ + Sbjct: 551 QVRKGRQKYYTYDDVEQDKLLNEIGRDGCAIQRYKGLGEMNPEQLWDT-----TMNPEQR 605 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +E + + + + + N N Sbjct: 606 VMLKVELTDAVEADRLFTILMGDKVEPRRKFIEDNAKNVSNL 647 Score = 175 bits (445), Expect = 2e-41, Method: Composition-based stats. Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 3/125 (2%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSI-GRKGISMQR 738 + +F +Y + + K + D + + GR G ++QR Sbjct: 524 LLLTFFYRYMKPLITEGHVYIAQPPLYQVRKGRQKYYTYDDVEQDKLLNEIGRDGCAIQR 583 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLW+TT+NP+ R +L+V++TDA +AD LF+ LMGD+VEPRR+FI++N+ Sbjct: 584 YKGLGEMNPEQLWDTTMNPEQRVMLKVELTDAVEADRLFTILMGDKVEPRRKFIEDNAKN 643 Query: 799 S-ALD 802 LD Sbjct: 644 VSNLD 648 >gi|315223358|ref|ZP_07865217.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga ochracea F0287] gi|314946689|gb|EFS98678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga ochracea F0287] Length = 658 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 281/604 (46%), Positives = 391/604 (64%), Gaps = 21/604 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y AD+IQ L+G++ V+ RPSMYIGD GLHH++YEVLDN+IDE+L GY D Sbjct: 8 EQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDVS-TRGLHHLVYEVLDNSIDEALAGYCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG Sbjct: 67 TISVTINEDNSITVEDNGRGIPVDVHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS L + R+G I++ + G+ P+ G + GT+VTF P IF Sbjct: 127 VGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGDT-DKRGTKVTFHPDEVIF 185 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237 + YDTL R+REL++LN + I+L D R+ + + + G++ FV +LD Sbjct: 186 EQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSQNGLKEFVKFLD 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++ P++ + I + G ++ I +++AM +ND Y+EN+ + NNI +GGTHL G R LT Sbjct: 246 GNRMPIIGNVIAMDGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305 Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R + +Y +KS +K + GDD REG T+V+S+K+ +P+F QTK KL + E Sbjct: 306 RTLKAYADKSGLLEKMNKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V S V V L +LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ LP Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCSE DP K ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A K+ S Sbjct: 426 GKLADCSEEDPAKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQHKVFDS 485 Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EI + TALG +G + +KLRYHK+IIM DADVDG+HI TL+LTFFFR M Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545 Query: 528 LIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 LI NG +YI PPLY K +Y +++ + ++ + G ++ + Sbjct: 546 LIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDA--LSAEMGNVNIQRYKGLGEMNDH 603 Query: 586 DLRN 589 L + Sbjct: 604 QLWD 607 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 57/69 (82%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEMN QLW+TT+NP+ R+L +V I +A++AD +FS LMGDEV PRREFI+ Sbjct: 589 VNIQRYKGLGEMNDHQLWDTTMNPEHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648 Query: 794 ENSLPSALD 802 +N+ + +D Sbjct: 649 KNAKYAKID 657 >gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella moribillum M424] gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella moribillum M424] Length = 643 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 285/591 (48%), Positives = 392/591 (66%), Gaps = 7/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Q Y+AD IQ+L+GL+AV+ RP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 6 MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-RGLHHLVWEIVDNSIDEALAGY 64 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + ITV + D V DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 65 CNTITVAIEKDNWIRVEDNGRGIPIDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L+ + R+G I+ M F G + + V G + TGT V F + Sbjct: 125 HGVGASVVNALSTNLEAYVHRDGKIHSMKFERGEVVQGITVIGET-DKTGTTVRFKADPE 183 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + YD L+ R+REL+FLN + I L D+R + +E Y+GG+ +V L+ + Sbjct: 184 IFQETTVYEYDILRSRIRELAFLNKGITIVLKDERENQEKEEDFCYEGGLLEYVEMLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L I + G + ++++M++N GY N+L + NNI +GGTH SG ++ALTR Sbjct: 244 KDALH-EAIYVHGEMEGKEVEISMQYNTGYSSNILSYANNINTHEGGTHESGFKTALTRI 302 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I +Y +K+ K+K ++ GDD REG +++SIK P+P+F QTK KL +SE+ ++ Sbjct: 303 INAYGKKNK-LIKEKETLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 361 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +L E+P AKIIV+K L AS R AA++AR+ TRRK L+ +LPGKLADCS Sbjct: 362 FSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 421 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D + ELFLVEGDSAGGSAK GR + QAILPL+GKILNVE+ R DK+LSS EI +LIT Sbjct: 422 KDAAECELFLVEGDSAGGSAKLGRDSKFQAILPLKGKILNVEKVRIDKVLSSDEIRSLIT 481 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG+ +++KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M LI G++YI +P Sbjct: 482 AVGMGIGETL-NMDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLYG+ GK Y EE L+ ++ + ++ G ++ +L + Sbjct: 541 PLYGLKVGKKEYYCHTEEELKQHIEEFAGDKKYAVQRYKGLGEMNAEELWD 591 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 13/193 (6%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672 +E+ I V + + + + ++ + LN + K +V V Sbjct: 462 VEKVRIDKVLSSDEIRSLITAVGMGIGETLNMDKLRYHK-----------IVIMTDADVD 510 Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGR 731 + F F + I + + + L + L I G Sbjct: 511 GSHIRTLLLTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEYYCHTEEELKQHIEEFAGD 570 Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEMNA +LW+TT++P R + +V I DA +AD F LMG++VEPRR+F Sbjct: 571 KKYAVQRYKGLGEMNAEELWDTTMDPKHRLMYQVSIGDAQRADAAFDTLMGEKVEPRRKF 630 Query: 792 IQENSLPS-ALDI 803 I+EN+L LDI Sbjct: 631 IEENALNVINLDI 643 >gi|227551202|ref|ZP_03981251.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|293377175|ref|ZP_06623383.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1] gi|227179670|gb|EEI60642.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|292644195|gb|EFF62297.1| DNA topoisomerase IV, B subunit [Enterococcus faecium PC4.1] Length = 692 Score = 576 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 271/662 (40%), Positives = 385/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R EP + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|187918301|ref|YP_001883864.1| DNA gyrase subunit B [Borrelia hermsii DAH] gi|119861149|gb|AAX16944.1| DNA gyrase subunit B [Borrelia hermsii DAH] Length = 639 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 277/584 (47%), Positives = 408/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 7 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 65 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 66 NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 125 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L + + R+G +++ ++ GI + + + G + GT+VTFL S+IF +++ Sbjct: 126 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 184 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ D+RS + + + +++GGI+AFV Y+ + K + P Sbjct: 185 FETLSKRLRELAFLNDKIRISIEDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 244 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+GS D++ + + ++W +GY +++L F NNI ++GGTH++G +S + ++ S Sbjct: 245 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 304 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD S+ DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + Sbjct: 305 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 364 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +++ LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 365 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 424 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 425 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 484 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY + Sbjct: 485 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 543 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 Y D+ E +L + + G ++ L Sbjct: 544 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 587 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 453 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737 F F + I + + + L + G++ +S+Q Sbjct: 513 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + +KI DA QA+ +F LMGD+VEPRREFI++N+L Sbjct: 573 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 632 Query: 798 P-SALDI 803 LD+ Sbjct: 633 DVVNLDV 639 >gi|288932528|ref|YP_003436588.1| DNA gyrase subunit beta [Ferroglobus placidus DSM 10642] gi|288894776|gb|ADC66313.1| DNA gyrase, B subunit [Ferroglobus placidus DSM 10642] Length = 621 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 276/582 (47%), Positives = 398/582 (68%), Gaps = 14/582 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y A+ I++L L+AV+KRP MYIG G GLHH+++EV+DN++DE L GY I V Sbjct: 2 EEYTAEQIEVLSDLEAVRKRPGMYIGGV-GIRGLHHLLWEVIDNSVDEHLAGYCSRIRVV 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS +V D+GRGIPT++H G A E++MT+LHAGGKF++K+YKVSGGLHGVG+SV Sbjct: 61 LHRDGSASVEDDGRGIPTEMHP-LGKPALEIVMTKLHAGGKFSKKAYKVSGGLHGVGLSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS W+++ +KR G IY + G+ PL + G N+TGT V F P +IF +F Sbjct: 120 VNALSEWVEVIVKRNGKIYRQRYERGVPVTPLEIIGET-NETGTYVRFKPDEEIFETTEF 178 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 YD + HRLREL++LN +++ L D+RS + + + GI FV +L+ +++ + Sbjct: 179 RYDIVAHRLRELAYLNKGLKLELYDERSGKK--EEFYSERGIVEFVEHLNANRE-KISDV 235 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I I G R+ IS+++A+++ + E +L + NNI +GGTH+ G R+ALTR I Y +K+ Sbjct: 236 IYISGERNGISVEVALQYTNTDFETILAYANNIHNVEGGTHVVGFRAALTRAINEYGKKN 295 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K+ + + G D REG T+V+S+K+P+P+F QTK KL +SEV++ VE+ V L W Sbjct: 296 ---VKNFKPITGVDVREGLTAVISVKVPEPQFEGQTKTKLSNSEVKTAVETIVYSELMRW 352 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 EEHP +A I++K + A+ R+AA+RARD+ +R+ +A+LPGKLADCS ++P++ EL Sbjct: 353 FEEHPEQANKIIEKCILAAKAREAAKRARDVIKRREE--VATLPGKLADCSSKNPEEREL 410 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEG+SAGGSAKQ R R QAILP+RGKI+NVE+A ++L + EI +I A+G G G+ Sbjct: 411 FIVEGESAGGSAKQARDRRFQAILPIRGKIINVEKAGMVRVLKNDEIKAIIAAIGAGFGK 470 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI K RY +IIIMTDAD+DGAHIRTLLLTFF+R M LI NG+LYI +PPLY + +G Sbjct: 471 D-FDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLYRVKKG 529 Query: 548 KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 K + Y+ ++ LE+ + + + + G ++ L Sbjct: 530 KKVYYLYSDKELEN--LLKRIGDAEVQRYKGLGEMNPEQLWE 569 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 10/153 (6%) Query: 658 NNSDILVKRIARGVQ-EQFVLEGSSIFS----FGSKYKR-IFSNRIEENYLTILSLICNG 711 + DI R R + ++G+ I + F +Y R + N L + G Sbjct: 470 KDFDIKKARYRRIIIMTDADIDGAHIRTLLLTFFYRYMRPLIENGYLYIAQPPLYRVKKG 529 Query: 712 DKIK-ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 K+ + L + + IG +QRYKGLGEMN QLWETT++P R L++V + DA Sbjct: 530 KKVYYLYSDKELENLLKRIG--DAEVQRYKGLGEMNPEQLWETTMDPKRRILIQVTLEDA 587 Query: 771 SQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 + A+++ S LMG+ E R+ FI E++ LD Sbjct: 588 AMAEEIVSILMGENTEDRKRFIMEHATEVRNLD 620 >gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 722 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 11/598 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Y A ++Q+L+ LD V+KRP MYIG T G GLHH++YE+LDNA+DE+ GY Sbjct: 73 MQEKRVAGEYTAANVQVLEALDGVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGY 131 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK--SYKVSG 118 A I V L+ D S +V+DNGRGIPTD+H + S E ++T +HAGGKF SY V+G Sbjct: 132 ATEINVVLHDDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGGKFGGSTSSYSVAG 191 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175 GLHGVG+SVVNALS L++ + R+G Y + G L T + + G+ + F Sbjct: 192 GLHGVGLSVVNALSEALEVTVCRDGKEYRQHYSRGKPLTMLSSTTLPDESSSRQGSCIRF 251 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFV 233 P +IF+ F++ T+ R+REL+FLN + I+L +++ + + Y GG+ +V Sbjct: 252 WPDKEIFTTTIEFDFSTISSRIRELAFLNPELTITLTKEEQDAQVQHNEYCYAGGLVEYV 311 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292 ++L+ KKPL PI + D I +D++++W D Y + VL + N+I DGGTH+ GL Sbjct: 312 AWLNTDKKPLH-DPIAFRKELDGIIVDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIEGL 370 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 +++LTR I ++ +KS K S+ G+ REG T ++S+K+P+P F QTK +L + EV Sbjct: 371 KTSLTRTINNFAKKSKIMKDKDISLSGEHVREGMTCIISVKVPNPEFEGQTKTRLGNPEV 430 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R +VE V + L+ +LE HP I+ K L+A AA+RAR+L R K VL +SLPG Sbjct: 431 RRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPG 490 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC+ +P + E+F+VEGDSAGGSAKQGR R+ QAILPLRGKILN+ER M ++ Sbjct: 491 KLADCASSNPAECEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAAMYKNE 550 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI LI LG G+ + F LRYHKI+I+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 551 EIQNLILGLGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEG 610 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK + Y DE L+D + + G + L Sbjct: 611 CIYVGVPPLYKVERGKQVHYCYDEADLKDLVNTFPTNASYNTQRFKGLGEMMPLQLWE 668 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 119/336 (35%), Gaps = 39/336 (11%) Query: 502 IMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEE 557 IM D D+ G H+R + ++P+ G P + I + + + Sbjct: 387 IMKDKDISLSGEHVREGMTCIISVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYL 446 Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID----------------------DAL 595 L +++ LS+ + + +L + Sbjct: 447 ELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSNPAECEIF 506 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSE 650 ++ + QA++ + + + + K N I K E Sbjct: 507 IVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGE 566 Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 ++ I++ V + F F + +F + L + Sbjct: 567 DFKKEALRYHKIVIL-TDADVDGAHIRTLLLTFFFRYQRA-LFDEGCIYVGVPPLYKVER 624 Query: 711 GDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 G ++ L++T + + QR+KGLGEM QLWETT++P+ R L ++ Sbjct: 625 GKQVHYCYDEADLKDLVNTFPTNA--SYNTQRFKGLGEMMPLQLWETTMDPERRLLKQLT 682 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + DA +A+ +FS LMG VE R+E IQ+ + LD Sbjct: 683 VEDAVEANVVFSSLMGARVEYRKELIQKAASIVNLD 718 >gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633] gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633] Length = 645 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 281/594 (47%), Positives = 405/594 (68%), Gaps = 8/594 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + + YDA IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MTEENKEVLAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I + + + V+D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFATHIEIEITPENHIRVTDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +++ ++GNIYE S+ G + L + G GT V F+P Sbjct: 120 GGLHGVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIVGQTE-KHGTSVYFVP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF ++++ L +R+REL+FLN +++++ D R EP T +Y+GGI+++V +L Sbjct: 179 DPEIFQETTVYDFEKLANRVRELAFLNKGLKLTITDLRVEEPVVKTFYYEGGIKSYVEHL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 ++ K+ L + PI ++G +D I +++AM++ GYH N+L FTNNI +GGTH SG+++AL Sbjct: 239 NKSKQVLFEEPIYVEGEQDGIQVEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGMKTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y + K+++ + G+D REG T+V+SIK PDP+F QTK KL +SE R++ Sbjct: 299 TRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 DRLFATHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS DP SE+F+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L++ EI + Sbjct: 419 CSSNDPSVSEIFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKASLDKILANDEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLL+T F+R M ++ G++YI Sbjct: 479 LFTAMGTGFGGD-FDLSKARYHKLVIMTDADVDGAHIRTLLITLFYRYMRPVVEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +PPLY + +GK Y++++E LE L S + G + L Sbjct: 538 AQPPLYKLKQGKQEFYIQNDEELEAKLKELPASPKPQISRYKGLGEMDAEQLWE 591 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 4/105 (3%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 + L + I L + + + RYKGLGEM+A QLWETT+NP RS Sbjct: 541 PLYKLKQGKQEFYIQNDEELEAKLKELPASPKPQISRYKGLGEMDAEQLWETTMNPQNRS 600 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL--PSA-LDI 803 +L+V + DA++AD + LMGD+VEPRREFI+ NS LDI Sbjct: 601 MLQVTVEDAAEADQVLDMLMGDKVEPRREFIEANSKFIDVNDLDI 645 >gi|6647532|sp|Q9ZFK1|GYRB_BORHE RecName: Full=DNA gyrase subunit B gi|3859564|gb|AAC72846.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317666|gb|AAT99954.1| DNA gyrase subunit B [Borrelia hermsii DAH] gi|51317668|gb|AAT99955.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317670|gb|AAT99956.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317672|gb|AAT99957.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317674|gb|AAT99958.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317676|gb|AAT99959.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317678|gb|AAT99960.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317680|gb|AAT99961.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317682|gb|AAT99962.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317684|gb|AAT99963.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317686|gb|AAT99964.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317688|gb|AAT99965.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317690|gb|AAT99966.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317692|gb|AAT99967.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317694|gb|AAT99968.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317696|gb|AAT99969.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317698|gb|AAT99970.1| DNA gyrase subunit B [Borrelia hermsii] gi|51317700|gb|AAT99971.1| DNA gyrase subunit B [Borrelia hermsii] gi|112031373|gb|ABH88159.1| GyrB [Borrelia hermsii] gi|112031377|gb|ABH88161.1| GyrB [Borrelia hermsii] Length = 634 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 277/584 (47%), Positives = 408/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L + + R+G +++ ++ GI + + + G + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ D+RS + + + +++GGI+AFV Y+ + K + P Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+GS D++ + + ++W +GY +++L F NNI ++GGTH++G +S + ++ S Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD S+ DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +++ LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E++ Sbjct: 360 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY + Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 Y D+ E +L + + G ++ L Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737 F F + I + + + L + G++ +S+Q Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + +KI DA QA+ +F LMGD+VEPRREFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 627 Query: 798 P-SALDI 803 LD+ Sbjct: 628 DVVNLDV 634 >gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis SK1058] Length = 649 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 279/627 (44%), Positives = 405/627 (64%), Gaps = 10/627 (1%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ Q YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEEKQQDIQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIQVFIEKDNSITVVDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G I+ + G + L + G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQEYRRGHVVADLEIIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ +F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y Sbjct: 179 PDPEIFTETVEFDFEKLNKRVQELAFLNRGLRISITDKRDGMEQVKDYHYEGGIASYVQY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPAVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L++ EI Sbjct: 419 DCSSNDPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANGEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ GF+Y Sbjct: 479 SLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGFVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEVKEYI--QPGANQEEELQAALARYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKI 622 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F LMGD VEP Sbjct: 574 SEGRSKPTIQRYKGLGEMDDHQLWETTMNPEHRLMARVSVDDAAEADKIFDMLMGDRVEP 633 Query: 788 RREFIQENSLPSALDI 803 RREFI+EN++ S LD+ Sbjct: 634 RREFIEENAVYSTLDV 649 >gi|256389238|ref|YP_003110802.1| DNA gyrase subunit B [Catenulispora acidiphila DSM 44928] gi|256355464|gb|ACU68961.1| DNA gyrase, B subunit [Catenulispora acidiphila DSM 44928] Length = 661 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 275/645 (42%), Positives = 390/645 (60%), Gaps = 12/645 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y+ADSI +L+GL+AV+KRP MYIG T GE GLHH++YE++DN++DE++ GYAD I V L Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNSVDEAMAGYADTIEVWLL 76 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V DNGRGIP ++ + G SA EV+MT LHAGGKF YKVSGGLHGVGVSVVN Sbjct: 77 ADGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVN 136 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALSS +++ + +G ++ + +G+ + + G A DTGT F DIF +++ Sbjct: 137 ALSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAA-DTGTSTIFWADVDIFETTVYSF 195 Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY-LDRHKKP 242 +TL R +E++FLN + ISL D+R + E R + +GGI FV + R +P Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255 Query: 243 LMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I +G + ++ ++A++WN Y E++ F NNI GGTH G R+ALT I Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIYTFANNINTHGGGTHEEGFRAALTTLI 315 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ ++ G+D REG T+++S+K+ +P+F QTK+KL + E ++ V+ V Sbjct: 316 NKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRLV 375 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L WLEE+P EA+ +++K + AS R AAR+AR+LTRRKG+L+ +SLPGKL+DC Sbjct: 376 YEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQSN 435 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP K+E+F+VEGDSAGGSA+ GR QAILP+RGKILNVE+AR DK+L + E+ LI+A Sbjct: 436 DPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALISA 495 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGTG+ D FDI++LRYHKII+M DADVDGAHI TLLLT FR M L+ G +Y+ PP Sbjct: 496 LGTGV-HDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY + + + D L+ + ++ N + + Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMDR 614 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 QA D E + + A + F+ Sbjct: 615 EHRILRQVTLDDAAQADDLFSVLMGEDVEARRNFIQRNAKDVRFL 659 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 7/87 (8%) Query: 724 DTIFSIG------RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + G RK ++QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 575 DQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMDREHRILRQVTLDDAAQADDLF 634 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 635 SVLMGEDVEARRNFIQRNAKDVRFLDI 661 >gi|256820281|ref|YP_003141560.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271] gi|256581864|gb|ACU92999.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271] Length = 658 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 282/604 (46%), Positives = 394/604 (65%), Gaps = 21/604 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++ Y AD+IQ L+G++ V+ RPSMYIGD G GLHH++YEVLDN+IDE+L GY D Sbjct: 8 EQQNSAEYSADNIQSLEGMEHVRMRPSMYIGDV-GTRGLHHLVYEVLDNSIDEALAGYCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I+VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKVSGGLHG Sbjct: 67 TISVTINEDNSITVEDNGRGIPVDVHKKEGVSALQVVMTKIGAGGKFDKGSYKVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVS VNALS L + R+G I++ + G+ P+ G+ + GT+VTF P IF Sbjct: 127 VGVSCVNALSDHLTATVYRDGKIWQQEYQRGVAMYPVKQVGNT-DKRGTKVTFHPDEVIF 185 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLD 237 + YDTL R+REL++LN + I+L D R+ + + + G++ FV +LD Sbjct: 186 EQTIEYKYDTLAARIRELAYLNKGITITLTDLRNKDEKGNFITEKFYSQNGLKEFVKFLD 245 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 ++ P++ + I + G ++ I +++AM +ND Y+EN+ + NNI +GGTHL G R LT Sbjct: 246 GNRMPIIGNVIAMDGEKNGIPVEVAMIYNDSYNENLHSYVNNINTSEGGTHLQGFRMGLT 305 Query: 298 RQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R + +Y +KS +K + GDD REG T+V+S+K+ +P+F QTK KL + E Sbjct: 306 RTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKTKLGNRE 365 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 V S V V L +LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ LP Sbjct: 366 VTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVMSGGGLP 425 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCSE DP+K ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A K+ S Sbjct: 426 GKLADCSEEDPEKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQHKVFDS 485 Query: 472 QEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 EI + TALG +G + +KLRYHK+IIM DADVDG+HI TL+LTFFFR M Sbjct: 486 DEIKNIYTALGVTVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFFFRYMRE 545 Query: 528 LIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 LI NG +YI PPLY K +Y +++ + ++ + G ++ + Sbjct: 546 LIENGHVYIATPPLYLVKSKNSKREEYAWNDKQRDA--LSAEMGNVNIQRYKGLGEMNDH 603 Query: 586 DLRN 589 L + Sbjct: 604 QLWD 607 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 57/69 (82%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEMN QLW+TT+NP+ R+L +V I +A++AD +FS LMGDEV PRREFI+ Sbjct: 589 VNIQRYKGLGEMNDHQLWDTTMNPEHRTLRQVTIDNATEADRVFSMLMGDEVPPRREFIE 648 Query: 794 ENSLPSALD 802 +N+ + +D Sbjct: 649 KNAKYAKID 657 >gi|72388575|gb|AAZ67931.1| DNA gyrase subunit B [Psychrobacter faecalis] Length = 721 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 316/721 (43%), Positives = 429/721 (59%), Gaps = 51/721 (7%) Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+ D I + ++ D S +V DNGRG+P D+H EEG+SAA+VIMT LHAGGKF SYKVSG Sbjct: 1 GHCDQIDIIIHEDESVSVLDNGRGVPVDIHPEEGVSAAQVIMTVLHAGGKFEDNSYKVSG 60 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS L++ I REG Y ++ +G+ D + A + TGT++ F PS Sbjct: 61 GLHGVGVSVVNALSKKLEMNIWREGYHYHQTYTDGVPDADIQQ-MEATDKTGTQIRFYPS 119 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +D+F+ F YD L RLRELSFLNS V+I L D+R + E +KGG+ FVSY++ Sbjct: 120 NDVFTGTIFEYDILAKRLRELSFLNSGVRIVLTDERIDKRHE--FEHKGGLSEFVSYINA 177 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + + D IS+++A++W D Y+E VLCFTNNIPQ+DGGTHLSG RSALTR Sbjct: 178 GKDGINEVFHFTSEQDDGISVEVALQWTDTYNEKVLCFTNNIPQRDGGTHLSGFRSALTR 237 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY+++ KK+K GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV+S VES Sbjct: 238 GLNSYMDRENLFKKEKIVATGDDAREGLTAIVSVKVPDPKFSSQTKDKLVSSEVKSAVES 297 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++D + +L E+P K I K++DA+ RDAAR+AR++TRRK LDIA LPGKLADC Sbjct: 298 AMHDKFNDYLLENPSAGKAIANKIIDAARARDAARKAREMTRRKTTLDIAGLPGKLADCQ 357 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SEL++VEGDSAGGSAKQGRSR+ QAILPL+GKILNVERARFDKMLSS E+G LI Sbjct: 358 EKDPALSELYIVEGDSAGGSAKQGRSRKTQAILPLKGKILNVERARFDKMLSSAEVGNLI 417 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALG GIG D ++ +K+RYHKIIIMTDADVDG+HIRTLLLTFFFRQ P LI G++YI + Sbjct: 418 TALGCGIGPDEYNPDKVRYHKIIIMTDADVDGSHIRTLLLTFFFRQTPELIERGYIYIAQ 477 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY + +G+ Y+KD+E+L+ YL++ ++ I+ L ++D + Sbjct: 478 PPLYKVKKGRQELYLKDDEALKAYLLSSTIDNTKLHISADAPAITGQALETLLNDYNQTQ 537 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEI--NVSLASKLANRLNF------------ 644 + + ++ + + + + + + L +L Sbjct: 538 LIKARLQIRYPAVLLDALTHTPKLSTDMTYDKSVMEAWKASLQTQLEHFGSDLNPEIELV 597 Query: 645 ----------------------IAEKSEKSWHGSINNS-------DILVKRIARGVQEQF 675 + E E ++S + + + Sbjct: 598 NIHAPQPKNMDAAAADLLGMTAVVELDESETSADDSDSLSAKAQWLPRITVYVHQLAHHY 657 Query: 676 VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG-----DKIKITGPCSLLDTIFSIG 730 +L+ S I S S + KI + L + G Sbjct: 658 LLDASFINSGEYTKLLRLSAEWNTLLAEEAFIRREASAGTTKKIPVRDFDYLWQQMMLSG 717 Query: 731 R 731 R Sbjct: 718 R 718 >gi|291523173|emb|CBK81466.1| DNA topoisomerase IV subunit B [Coprococcus catus GD/7] Length = 640 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 253/615 (41%), Positives = 361/615 (58%), Gaps = 14/615 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SY+ADSI +L+GL+AV+KRP MYIG GL+H++YE++DN++DE L G+ I V Sbjct: 4 TNSYNADSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLVYEIVDNSVDEHLAGFCSEIHV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN DGS TVSDNGRGIP +HK+ GISA ++ T LHAGGKF+ +YK SGGLHGVG S Sbjct: 63 TLNKDGSATVSDNGRGIPVGMHKK-GISAERLVFTTLHAGGKFDDSAYKTSGGLHGVGSS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDI 181 VVNALS WL + + REG Y + G+ PL G TGT ++FLP +I Sbjct: 122 VVNALSEWLDVTVSREGCTYHDRYERGVPTIPLEKGLLPVIGRT-RKTGTTISFLPDKEI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F D ++ RL E ++LN + I DKR + G+ F+ L+R+K+ Sbjct: 181 FEKTWFKEDEIKSRLHETAYLNPELTIIYEDKRVTPEEQEVYHEPDGLAGFIRDLNRNKE 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + +G + I+++ A ++ + +HENVL F NNI +GGTH++G +SA T + Sbjct: 241 ALH-DIVCFKGESEGITVEGAFQYVNEFHENVLGFCNNIYNAEGGTHITGFKSAFTSIMN 299 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y + K+ + G D R G T+V+SIK PDPRF QTK KL + + VN Sbjct: 300 AYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDPRFEGQTKTKLDNQDAARATGKIVN 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + + + +++ K+++ A+ +R +AR K S GKLA+C R+ Sbjct: 360 EEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKARTNLLTKQKFSFDS-NGKLANCESRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I + Sbjct: 419 ADICEIFIVEGDSAGGSAKTARNRHFQAILPIRGKILNVEKASIDKILANAEIKTMINSF 478 Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 G G + + FDI+KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 479 GCGFSEGYGNDFDISKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAM 538 Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY +Y+ D+++LE Y + ++ + + + ++ +I Sbjct: 539 PPLYKAMPSKGREEYLYDDKALEQYRKTHKGNFTLQRYKGLGEMDAAQLWETTLNPETRI 598 Query: 598 DKLIKDFYPNHDKTF 612 K ++ Sbjct: 599 LKKVEIEDARIASDI 613 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 72/373 (19%), Positives = 128/373 (34%), Gaps = 48/373 (12%) Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT--DADVDGAHIRTLLLTFFFRQMPSL 528 + TG I +I I+ D + GA IR + + P Sbjct: 276 NNIYNAEGGTHITGFKSAFTSIMNAYAREIGILKEKDGNFTGADIRNGMTAVISIKHPDP 335 Query: 529 IHNGFLYI------IKPPLYGITRGKSLQYVKDE----------------------ESLE 560 G I + ++Y ++ Sbjct: 336 RFEGQTKTKLDNQDAARATGKIVNEEVVRYFDKNLDTLKVVLSCAEKAAKIRKTEEKART 395 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 + L Q S + + + + FI + K H + + + Sbjct: 396 NLLTKQKFSFDSNGKLANCESRNADICEIFIVEGDSAGGSAKTARNRHFQAIL--PIRGK 453 Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + +++ +N + + + S + +I + ++G+ Sbjct: 454 ILNVEKASIDKILANAEIKTMINSFGCGFSEGYGNDFDISKLRYNKII--IMADADVDGA 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----------CNGDKIKITGPCSLLDTIFSIG 730 I + +F + E I G + + L+ Sbjct: 512 HISTLL---LTLFYRFMPELIYEGHVYIAMPPLYKAMPSKGREEYLYD-DKALEQYRKTH 567 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 + ++QRYKGLGEM+A+QLWETTLNP+TR L +V+I DA A D+ LMG +V PR+ Sbjct: 568 KGNFTLQRYKGLGEMDAAQLWETTLNPETRILKKVEIEDARIASDITGLLMGPDVPPRKA 627 Query: 791 FIQENSLPSALDI 803 FI +++ + LDI Sbjct: 628 FIYKHAHDAELDI 640 >gi|289565127|ref|ZP_06445580.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF] gi|294614810|ref|ZP_06694705.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636] gi|294617489|ref|ZP_06697120.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679] gi|289163134|gb|EFD10981.1| DNA topoisomerase IV, B subunit [Enterococcus faecium D344SRF] gi|291592272|gb|EFF23886.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1636] gi|291596229|gb|EFF27491.1| DNA topoisomerase IV, B subunit [Enterococcus faecium E1679] Length = 692 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 270/662 (40%), Positives = 384/662 (58%), Gaps = 17/662 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 14 KKVNNEYNDSSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGV Sbjct: 73 IDVTIHEDNSITVADSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F N G D L G GT V FLP IF Sbjct: 132 GASVVNALSKWLTVTIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F+Y+ L RLRE +FL V+ISL D R P + Y+ GI+ FV YL+ K Sbjct: 192 STTKFSYEILAERLRESAFLLKGVKISLSDLRGEVPVKEIFHYEEGIKEFVDYLNEEKDT 251 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G ++ I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Sbjct: 252 LTP-VVYFSGEKEGIEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNE 310 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+VV++ + Sbjct: 311 YARKVGLLKERDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVI 370 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ + +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 371 SEQMGFYLQENSEMSQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 431 SRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 491 YTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIAL 549 Query: 539 PPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +++G+ + V + +D +I + + G ++ L Sbjct: 550 PPLYKVSKGQGKKQVIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET----- 604 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +D + + + + + + + L +K Sbjct: 605 TMDPTSRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDT 664 Query: 656 SI 657 I Sbjct: 665 EI 666 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 389 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 448 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 449 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 508 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 509 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 568 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 569 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 627 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 628 VTTLMGDKVEPRRKWIENH 646 >gi|256370829|ref|YP_003108653.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007413|gb|ACU52980.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 647 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 287/615 (46%), Positives = 383/615 (62%), Gaps = 13/615 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SY A I +L+GL+ V+ RP MYIG T G SGLHH+++EV+DNA+DE + G I V Sbjct: 13 EASYTAADIVVLEGLEHVRLRPGMYIGST-GPSGLHHLVWEVVDNAVDEVMAGACTEIDV 71 Query: 67 TLNMDGSCTVSDNGRGIPTDLHK-EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 T+ DG C V DNGRGIP D H + SAAEV++T+L+AGGKF YKVSGGLHGVGV Sbjct: 72 TILADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGV 131 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS+ L L + R+G+ Y M F+ G PL GS+G GT VTF P IF Sbjct: 132 SVVNALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRRGTVVTFWPDPTIFED 191 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ + RL+ ++FLN V + D+R E T Y GGI FV +L+ K PL Sbjct: 192 TEFSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLF 251 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S +++ +++A WN ++E + F N I ++GG H G R ALT+ I Y Sbjct: 252 AKVGYYAASEEDMEVEVAFSWNTTFYETLFTFANGISTEEGGMHAEGFRKALTQVINRYA 311 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ ++ G+D REG T+++S+++ +P+F QTK KL + VRS VE N+ L Sbjct: 312 RARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHL 371 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + WLEE+P EA+ IV+K + A R AAR+AR+LTRRK L+ A LPGKL DC+ RDP + Sbjct: 372 ATWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSE 431 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SELF+VEG+SAGG+ +GR + QA+LP+RGKILNVERAR DKMLS+QEI +LI A+G G Sbjct: 432 SELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAG 491 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 +G D FDI K RYHK+II+ DAD DG+HIRTLLLTFFFRQM L+ G +Y +PPLY Sbjct: 492 VG-DEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYST 550 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 G Y+K+E +L ++ L G + ++LR D + Sbjct: 551 LLGTEKVYIKNEAERLRFLEAHPNHKKPFLRLKGLGEMDFDELR---------DTTLHQD 601 Query: 605 YPNHDKTFIEQAVIS 619 K IEQA I+ Sbjct: 602 RRTLLKVTIEQAAIA 616 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 R KGLGEM+ +L +TTL+ D R+LL+V I A+ AD++ S LMGD+VE RR FIQEN+ Sbjct: 581 RLKGLGEMDFDELRDTTLHQDRRTLLKVTIEQAAIADEVCSVLMGDDVEQRRRFIQENA 639 >gi|290792686|gb|ADD63785.1| DNA gyrase subunit B [Borrelia hermsii] gi|290792694|gb|ADD63789.1| DNA gyrase subunit B [Borrelia hermsii] Length = 634 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 277/584 (47%), Positives = 407/584 (69%), Gaps = 6/584 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +IQ+LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V + Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVII 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N D S TV+DNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVV Sbjct: 61 NSDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS+L + + R+G +++ ++ GI + + + G + GT+VTFL S+IF +++ Sbjct: 121 NALSSFLAVIVSRDGKLFKQTYSRGIPTSEVDIIGVSS-ARGTKVTFLADSEIFETLEYD 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 ++TL RLREL+FLN ++IS+ D+RS + + + +++GGI+AFV Y+ + K + P Sbjct: 180 FETLSKRLRELAFLNDKIRISIEDRRSGKEKLLEFYFEGGIKAFVDYITNNSKNIQNEPY 239 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+GS D++ + + ++W +GY +++L F NNI ++GGTH++G +S + ++ S Sbjct: 240 FIEGSCDDVIVSVGLKWTEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSK 299 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 SKKD S+ DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + Sbjct: 300 ISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVI 359 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +++ LE II+ K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P E++ Sbjct: 360 DDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPADREIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQD 488 +VEGDSAGGSAK GR R +QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ Sbjct: 420 IVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT 479 Query: 489 SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 F I KLRYHKIIIM DADVDG+HIRTLLLTFFFR M LI NG +YI PPLY + Sbjct: 480 -FYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYEN 538 Query: 549 SLQYVKDEESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 Y D+ E +L + + G ++ L Sbjct: 539 REHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWE 582 Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 4/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E V KL + + K+++ ++ V + Sbjct: 448 MLNVEKTREDKVITNDKLIPIIASLGAGVGKTFYIEKLRYHKIIIMADADVDGSHIRTLL 507 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSLLDTIFSIGRK-GISMQ 737 F F + I + + + L + G++ +S+Q Sbjct: 508 LTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN +QLWETT+NP TR + +KI DA QA+ +F LMGD+VEPRREFI++N+L Sbjct: 568 RYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNAL 627 Query: 798 P-SALDI 803 LD+ Sbjct: 628 DVVNLDV 634 >gi|332711757|ref|ZP_08431688.1| DNA gyrase subunit A [Lyngbya majuscula 3L] gi|332349735|gb|EGJ29344.1| DNA gyrase subunit A [Lyngbya majuscula 3L] Length = 867 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 292/870 (33%), Positives = 427/870 (49%), Gaps = 77/870 (8%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSSYSADQIQVLEGLEPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRG+PTD H G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 DINSDGSVTVTDDGRGVPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS W+ + + RE + + G+ L+V TGT V F P ++IF+ Sbjct: 121 VVNALSEWVDVTVWREKKEHTQRYERGVPVTELLVKPYKKTKTGTSVNFKPDTEIFTGGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL++LN+SV+I+ D R EPR T Y+GGI+ +V+Y++R K L + Sbjct: 181 EFDYTTLSGRLRELAYLNASVRITFSDHRLEEPRVETYHYEGGIQEYVAYMNREKHALHE 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I IQG R NI +++A++W D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 EIIYIQGERKNIQVEVALQWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNAIA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+ + ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKIKESESNLGGENIREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +L+ P I++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP + Sbjct: 361 TEYLDFRPQVVDTILEKAIQAYKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPGE 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK----MLSSQEIGTLITA 480 SE+F+VEGDSAGG L K L E+A + +++ + Sbjct: 421 SEIFIVEGDSAGGCFSGETQVALADGRSLSFKELVAEQAMGKEHFCYTITNNGSIGIERI 480 Query: 481 LGTGIGQDSFDINKLRYHK--IIIMTDADV-----DGAHIRTLLLT------FFFRQMPS 527 + I + + ++ KL II T D DG + + LT +R + Sbjct: 481 INPRITKANAEVIKLTLDNSETIICT-PDHRFMLQDGTYKPAVSLTPDDFLMPLYRPLAE 539 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY-LINQSLSEEIELFCDSKGVISKND 586 + + Y G Q + + + + Sbjct: 540 IRKQAKVKTQNKEAYSAVGGNQTQVCEAVANYNSVAELKYEFPYVGLWSSPLNPPTLGDF 599 Query: 587 LRN--------------------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 I+ ++ + P+ +E V Sbjct: 600 QSFVPPKIGGLGGQNHTQNQQSHYNYQVVSIEPLEQLVDVYDIEVPHTHNFALESGVFVH 659 Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSINNSDIL 663 + ++ LN K + ++S++ Sbjct: 660 NSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDSSNLR 719 Query: 664 VKRIA----RGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 RI V + F + + + I + L + Sbjct: 720 YHRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYIYIACPPLYKLERGRNHNYCYSD 779 Query: 720 CSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I ++QR+KGLGEM QLW+TT+NP+TR++ +++I DA++AD + Sbjct: 780 RELQQRISQFPDNA--NYNIQRFKGLGEMMPQQLWDTTMNPETRTMKQIEIEDAAEADRI 837 Query: 777 FSRLMGDEVEPRREFIQENS--LPSA-LDI 803 F+ LMGD V PRR+FI+ L LDI Sbjct: 838 FTVLMGDRVAPRRQFIETYGARLNLNDLDI 867 >gi|300814729|ref|ZP_07094977.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511116|gb|EFK38368.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 639 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 284/592 (47%), Positives = 380/592 (64%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YDA IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G Sbjct: 1 MAEK--KRHYDAGDIQVLKGLEPVRKRPGMYIGST-GEKGLHHLVYEVVDNSIDEALAGI 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + + DGSC V DNG GIP ++H + G S E ++T LHAGGKF+ K+YKVSGGL Sbjct: 58 CDHIKIVITKDGSCYVEDNGSGIPVEIHPQTGKSTVETVLTILHAGGKFDNKAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVGVSVVNALS+ LK IKR G IY F G + L G N TGT++ F P Sbjct: 118 HGVGVSVVNALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +F++D L R RE++FLN ++I D+R + + Sbjct: 178 EIFDTVEFSFDILSKRFREMAFLNKGIKIDFTDERINKNEIYHYEGGIKSFVEYINSKKK 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +P+ I I R+N SI++A+++ Y E VL F NNI ++GG+HLSG RSA+T+ Sbjct: 238 YEPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y K K+ + ++ GDD REG T+VLS+K+P+P+F QTK KL +SE + VV+S Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ LS +LEE+P +K+I++K + A RDAARRAR+++R K L +LPGKL DCS+ Sbjct: 358 VSEKLSMFLEENPKTSKVILEKAVAARRARDAARRAREISRAKNNL-DMTLPGKLFDCSD 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +KSE+FLVEG+SAGGSAK GR E QA+LPLRGKI+NVE+A KML+S EI +IT Sbjct: 417 VGSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTG FDI+KLRY+KIIIMTDADVDGAHI TLLLTFFFR M LI NG +Y+ + Sbjct: 477 AFGTGY-SGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQA 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 PLYG+ + + E + + SE+ G ++ + L Sbjct: 536 PLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKRYKGLGEMNYDQLWE 587 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E + +S++ + + S + ++ V ++ Sbjct: 454 IMNVEKATEAKMLNSSEIKAMITAFGTGYSGEFDISKLRYNKIIIMTDADVDGAHIMTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQR 738 F F I + + + L N ++ L + + K I+++R Sbjct: 514 LTFFFRYMRPLIENGHVYVAQAPLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NPD R LLRV I D + DD F LMG EVEPRREFI EN+ Sbjct: 574 YKGLGEMNYDQLWETTMNPDNRLLLRVNIEDFDETDDTFQMLMGQEVEPRREFISENAQY 633 Query: 799 SA 800 + Sbjct: 634 AD 635 >gi|269217830|ref|ZP_06161684.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212765|gb|EEZ79105.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 693 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 268/615 (43%), Positives = 372/615 (60%), Gaps = 33/615 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YDA SI +L+GL+AV+KRP MYIG T GE GLHH +YEV+DN++DE+L G D I Sbjct: 23 KGQAYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEVVDNSVDEALAGICDHIE 81 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG V DNGRGIP + H E A EV+MT LHAGGKF Y VSGGLHGVGV Sbjct: 82 VTILADGGLRVRDNGRGIPVNEHPTEHKPAVEVVMTILHAGGKFGNGGYAVSGGLHGVGV 141 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ ++ ++R+G ++ +SF NG+ PL G ++ GT TF + DIF Sbjct: 142 SVVNALSTRMETEVRRDGYVWRISFENGVPTGPLER-GEQTDEHGTTQTFWANPDIFETT 200 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-------------------RSPEPREITMFYK 226 ++++TL+ R ++++FLN ++I+L D+ +P R ++ Y Sbjct: 201 HYDFETLRRRFQQMAFLNKDLRITLTDERPTATPEGDEVVGETGEGSPTPGYRSVSYMYS 260 Query: 227 GGIEAFVSY--LDRHKKPLMQSPIRIQGSRDN--------ISIDLAMRWNDGYHENVLCF 276 GG+ +V + + + + + + + ++AM+W Y E + F Sbjct: 261 GGLLDYVKHLNTTKKVEVVHPDVVYFEAEDRERQIQCEVAMQCEVAMQWTSAYSETLNTF 320 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N I +GGTH G RSALT I Y K ++ GDD REG T+++S+K+ + Sbjct: 321 ANTINTTEGGTHEEGFRSALTSVINKYARDKGLLKDKDPNLSGDDIREGLTAIISVKLGN 380 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL ++E R+ V+ V L+ WL+ HP EAK I++K L A R AAR+AR Sbjct: 381 PQFEGQTKTKLGNTEARTFVQQQVYSHLTDWLDMHPNEAKDIIRKALQAFAARAAARKAR 440 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 + TRRK VL+ AS+PGKL DC+ R+P++ E+F+VEGDSAGGSA GR E+QAI+P+RGK Sbjct: 441 EATRRKSVLESASMPGKLKDCTSRNPEECEIFIVEGDSAGGSAVNGRDPEHQAIMPIRGK 500 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVE+AR D+ LSS I LITA GTGIG D FD+ KLRYHKI+ M DADVDG+HI TL Sbjct: 501 ILNVEKARLDRALSSDTIQGLITAFGTGIG-DEFDMAKLRYHKIVFMADADVDGSHIATL 559 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575 LLT +R M LI G +Y+ PPLY I ++ YV + ++ L+ Sbjct: 560 LLTLVYRYMRPLIEGGHVYLAMPPLYRIKWTNAVHDYVFSDRERDEKLVEGKDKGFRLPR 619 Query: 576 CDSKGVISKNDLRNF 590 +S+ + L Sbjct: 620 EESQRIQRYKGLGEM 634 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%) Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 ++ +QRYKGLGEMNA +LW+TT+NP+ R+L +V I DA+ D+ FS LMG++VE Sbjct: 619 REESQR---IQRYKGLGEMNAEELWDTTMNPEARTLKQVSIDDAAATDETFSILMGEDVE 675 Query: 787 PRREFIQENSLPSA-LDI 803 RR FIQ N+ LDI Sbjct: 676 SRRGFIQRNAHDVRFLDI 693 >gi|266620982|ref|ZP_06113917.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479] gi|288867363|gb|EFC99661.1| DNA gyrase, B subunit [Clostridium hathewayi DSM 13479] Length = 636 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 290/585 (49%), Positives = 394/585 (67%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D+I V Sbjct: 2 SEEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDMIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+N D S TV D+GRGIP + K+ GI A EV T LHAGGKF YKVSGGLHGVG S Sbjct: 61 TINEDNSITVVDDGRGIPVGIQKKAGIPAVEVAFTILHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS+WL++ I ++G Y+ + G PL V A ++ GT+VTFLP IF Sbjct: 121 VVNALSNWLEVEITQDGKTYKQRYEKGKTMYPLKVIREAGPDEHGTKVTFLPDETIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL+ RLRE +FL +++I L D R + + Y+GGI+ FV+YL+R K PL Sbjct: 181 VFDYDTLKIRLRETAFLTKNLKIVLRDNREEKHEHV-FHYEGGIKEFVTYLNRGKTPLYD 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +GS+D + ++++M+ ND Y EN+ F NNI +GGTHLSG ++ALT + Y Sbjct: 240 QVFYCEGSKDGVYVEVSMQHNDSYTENIYSFVNNINTPEGGTHLSGFKNALTNTLNDYAR 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K+++ ++ G+D REG T+++S+K+ +P+F QTK+KL +SE R V++ + + + Sbjct: 300 NNKLLKENEANLSGEDIREGLTAIISVKIEEPQFEGQTKQKLGNSEARGAVDNILREQFT 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK I K + A R AAR+ARDLTRRK L+ +LPGKLADCS+++P+ Sbjct: 360 YFLEQNPSVAKTICDKSIMAQRARAAARKARDLTRRKTALEGMALPGKLADCSDKNPENC 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK RSR+ QAILPLRGKILNVE+AR D++ S+ EI +ITA GTGI Sbjct: 420 EIYIVEGDSAGGSAKTARSRDTQAILPLRGKILNVEKARLDRIYSNAEIKAMITAFGTGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ +PPLY + Sbjct: 480 HED-FDISKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGHVYLAQPPLYKVE 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y +E L + L G + L Sbjct: 539 KNKKVWYAYSDEELNNILKEIGRDTNNKIQRYKGLGEMDAEQLWE 583 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 4/105 (3%) Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ L + + IGR + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 532 PPLYKVEKNKKVWYAYSDEELNNILKEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591 Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 LLRV + AS+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 592 ILLRVAFDEETASEIDLTFTTLMGDQVEPRREFIEANAKYGNLDI 636 >gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555] gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016] gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555] gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016] Length = 637 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 296/643 (46%), Positives = 416/643 (64%), Gaps = 12/643 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +YD + IQIL+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY D Sbjct: 3 QEKKQTYDENQIQILEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCDK 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S TV+DNGRG+P +H + EVIMT LHAGGKF YKVSGGLHGV Sbjct: 62 IDVVIHEDNSVTVADNGRGMPVGIHHKIKKPTVEVIMTILHAGGKFGGGGYKVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS ++ +KRE ++++ F G + L + G + + GT++ F P +IF Sbjct: 122 GASVVNALSEICEVEVKREKHVWKQVFKRGKVATGLEIIGDSE-EHGTKIYFKPDKEIFD 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 DF+YD L RLREL+FLN + I+L D+RS + Y+GGI++FV+YL+R+K+ + Sbjct: 181 EVDFDYDMLSQRLRELAFLNKGIAITLKDERSGKE--ELFHYEGGIKSFVTYLNRNKQTI 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI ++G + + S+++A ++N+GY EN+ F NNI +GGTHL+G +SALTR Y Sbjct: 239 HKEPIYVEGIKGDYSVEIAFQYNNGYSENIFSFANNIDTIEGGTHLAGFKSALTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K++ +++ G+D REG T+V+SIK+ DP+F QTK KL +SEVR +V++ + + Sbjct: 299 AKKFNILKENDKNLSGEDIREGITAVISIKLVDPQFEGQTKTKLGNSEVRGIVDNIMAES 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS +L+E+P AK I+ K L AS R+AAR+AR+LTRRK VL+ SLPGKLADCS +DP Sbjct: 359 LSDFLQENPQVAKTIIDKSLVASRAREAARKARELTRRKTVLENTSLPGKLADCSSKDPS 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E++LVEGDSAGGSAKQGR R QAILPLRGKI+NVE+ R DK+L +EI +ITA G Sbjct: 419 ECEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILGYEEIRAMITAFGA 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FDI+K+RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ +YI +PPLY Sbjct: 479 GIGKD-FDISKIRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRELVEKCHVYIAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDDALKIDKLI 601 + + K Y ++ L+ L G + L + ++ Sbjct: 538 VAKNKKDYYAYSDKELDILLNEIGGKNSNVNIQRYKGLGEMDSEQLWDT-----TMNPET 592 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + I I + + + + +N Sbjct: 593 RTLIQVNVEDTIAADEIFTILMGDKVEPRKDFIIENAKKVVNL 635 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 5/130 (3%) Query: 679 GSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGI 734 + + +F +Y R + L + K LD + + G+ + Sbjct: 508 RTLLLTFFYRYMRELVEKCHVYIAQPPLYKVAKNKKDYYAYSDKELDILLNEIGGKNSNV 567 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM++ QLW+TT+NP+TR+L++V + D AD++F+ LMGD+VEPR++FI E Sbjct: 568 NIQRYKGLGEMDSEQLWDTTMNPETRTLIQVNVEDTIAADEIFTILMGDKVEPRKDFIIE 627 Query: 795 NSLP-SALDI 803 N+ LDI Sbjct: 628 NAKKVVNLDI 637 >gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501] gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501] Length = 642 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 291/588 (49%), Positives = 395/588 (67%), Gaps = 4/588 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S+Y A+ IQ+L+GLD V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I Sbjct: 2 TKKSNYGAEQIQVLEGLDPVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + +N DGS TV+DNGRGIPTD+H G SA E +MT LHAGGKF YKVSGGLHGVG Sbjct: 61 EIDINADGSITVTDNGRGIPTDVHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 +SVVNALS W+ + + R+ NI+ + GI L + TGT V+FLP IFS Sbjct: 121 ISVVNALSEWVVVNVWRDNNIHTQRYERGIPLGSLDTKPDKKHSTGTSVSFLPDIQIFSG 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F+Y TL RL+EL++LN+ V+I+ D R EP T Y+GGI+ +V+Y+ R K PL Sbjct: 181 GIEFDYSTLAGRLKELAYLNAGVKITFTDHRKEEPYNETYCYEGGIKEYVTYMCRDKDPL 240 Query: 244 MQSPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 Q I + G ++ +++A + D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 HQDIIYVSGEKNGTQVEVALLWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNN 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 K K++ ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + Sbjct: 301 VARKRNKLKENDANLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGE 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ +LE +P A I++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP Sbjct: 361 VLTEYLEFNPQVADNIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDP 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++SE+FLVEGDSAGGSAKQGR R QAILPLRGKI+N+E+ K+ + EI +LITALG Sbjct: 421 EESEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI + FD +LRYH+I+IMTDADVDGAHIRTLLLTFF+R SL+ G++YI PPLY Sbjct: 481 LGIKGEEFDSEQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLY 540 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 + RG++ Y +E L++++ + + G + L Sbjct: 541 KVERGRNHMYCYNERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWE 588 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 12/159 (7%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTI--LSLI 708 ++ + RI + ++G+ I + F +Y+R ++ + Sbjct: 486 EEFDSEQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYVYIACPPLYKVE 543 Query: 709 CNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + + L + I S+ ++QR+KGLGEM +QLWETT+NP+TRS+ +V+I Sbjct: 544 RGRNHMYCYNERQLQEHINSLPNNANYTIQRFKGLGEMMPTQLWETTMNPETRSMKQVEI 603 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 DA++AD +F+ LMGD V PRREFI+ LDI Sbjct: 604 EDAAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLDI 642 >gi|300934345|ref|ZP_07149601.1| DNA gyrase subunit B [Corynebacterium resistens DSM 45100] Length = 674 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 276/653 (42%), Positives = 390/653 (59%), Gaps = 38/653 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + ++Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY Sbjct: 1 MGEQQKKNNYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ +TV L DG V DNGRGIP + H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 60 ANEVTVKLLEDGGVEVEDNGRGIPVEKHPS-GPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G ++ F N + L A TGT F P + Sbjct: 119 HGVGISVVNALSTRVETEIKRDGYLWRQVFNNAVP-EELEQVKKA-RGTGTRQRFWPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------- 215 IF +FN+ T+ RL+E++FLN + I+LID+R Sbjct: 177 IFETVEFNFKTVAKRLQEMAFLNKGLTINLIDERPQVEAEDELADAAEDADAPKTSEEKA 236 Query: 216 ------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 EP + T Y G++ +V +++ K + + I + ++ +++A++WN GY Sbjct: 237 QEEKAKKEPTKKTFHYPEGLKDYVDFINSKKTAVHPTIISFEAKGEDHEVEVALQWNSGY 296 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 ++V F N I +GGTH G R+ALT + Y + K + GDD REG +V Sbjct: 297 AQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKDKDPNFSGDDVREGLAAV 356 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+++ DP+F QTK KL ++E++ V+ VN+ LS WL+ +P EAK+IV K + ++ R Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLSDWLDANPAEAKVIVNKAVASAHAR 416 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 AAR+ARDL RRK D+ LPGKLADC +D K SEL++VEGDSAGGSAK GR QA Sbjct: 417 MAARKARDLVRRKSASDLGGLPGKLADCRSKDAKLSELYIVEGDSAGGSAKSGRDSMFQA 476 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDI+KLRYHKI++M DADVD Sbjct: 477 ILPLRGKILNVEKARMDKILKNAEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADVD 535 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G HI TLLLT FR M L+ G++Y+ PPLY + GK + D L+ + L+ Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLANPPLYKLKWGKGEPGFAFSDRERDKLLEEGLA 595 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ D I + ++ + + Y + +E A + Sbjct: 596 AGRKINKDDG--IQRYKGLGEMNAKELWETTMDPEYRVLRRVTLEDAAGADEL 646 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 101/245 (41%), Gaps = 24/245 (9%) Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 + LSE + DS G +K+ + L + I + ++ A + + Sbjct: 448 DAKLSELYIVEGDSAGGSAKSGRDSMFQAILPLRGKILNVEKARMDKILKNAEVQAIITA 507 Query: 625 ESDQEINVSLASKLANR-LNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIF 683 + SKL + +A+ H + +L + + V+E +V Sbjct: 508 LGTGIHDEFDISKLRYHKIVLMADADVDGQHIATLLLTLLFRFMRPLVEEGYV------- 560 Query: 684 SFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRY 739 + LL+ + GRK I+ +QRY Sbjct: 561 ---YLANPPLYKLKWGKGEPGFAFSDRERDK-------LLEEGLAAGRK-INKDDGIQRY 609 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA +LWETT++P+ R L RV + DA+ AD+LFS LMGD+V RR FI N+ Sbjct: 610 KGLGEMNAKELWETTMDPEYRVLRRVTLEDAAGADELFSILMGDDVVARRSFITRNARDV 669 Query: 800 A-LDI 803 LD+ Sbjct: 670 RFLDV 674 >gi|282899715|ref|ZP_06307679.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505] gi|281195594|gb|EFA70527.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505] Length = 798 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 288/812 (35%), Positives = 425/812 (52%), Gaps = 30/812 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY + V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHVDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN DGSCTV+D+GRGIPTD+H + G SA E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 ELNADGSCTVTDDGRGIPTDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS + + + RE ++ + G L V + TGT V F P IF+ Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQHSRTGTSVKFKPDVQIFTTGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+IS D R + P+ T YKGGI+ +VSY++R K Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + I +QG R+N+ +++A++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QALHEEIIYVQGERNNVQVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGG L L E+A + T+ Sbjct: 421 RDPAESEIFIVEGDSAGGCFVGNTLVSLTDGRNLTFTDLIAEQAAGKQNY----CYTIQE 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII-- 537 GI + +++ +T +D + F ++ +G Sbjct: 477 NGEVGIEKILHVRTTKTNAEVVRVT---LDNDQVLICTPDHLF-----MLRDGNYQAAGL 528 Query: 538 -KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 P + + ++ Y E + D + + + + Sbjct: 529 LTPQDSLMPYYDQSIPAVMQSAVTTYNHRVVSVESLAEKFDVYDLEVPHTHNFALTAGVF 588 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-KSWHG 655 + K + + + + N E + + +++ + + + + + + Sbjct: 589 VHNSAKQGRDRRTQAIL--PLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDA 646 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 S +V V + F + + I I + + + Sbjct: 647 SQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGKNYHY 706 Query: 716 ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L I ++ G ++QR+KGLGEM QLW TT+NP+TR+L +V+I DA++AD Sbjct: 707 CYSDRELQQHISTLPGNANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKQVEIEDAAEAD 766 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 +F+ LMGD V PRREFI+ LDI Sbjct: 767 RIFTILMGDRVAPRREFIETYGSKLNLTDLDI 798 >gi|226362903|ref|YP_002780683.1| DNA gyrase subunit B [Rhodococcus opacus B4] gi|226241390|dbj|BAH51738.1| DNA gyrase subunit B [Rhodococcus opacus B4] Length = 680 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 265/609 (43%), Positives = 371/609 (60%), Gaps = 37/609 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA Sbjct: 8 KSTSSKDYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYAS 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TL DG V D+GRGIP +H G+ EV++T+LHAGGKF+ SY VSGGLHG Sbjct: 67 KVEITLLEDGGVQVVDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS+ L + IKR+G + ++ + L V G A +TGT V F +IF Sbjct: 126 VGISVVNALSTRLDVDIKRDGFRWNQTYTDSKP-GEL-VKGEATKETGTTVRFWADPNIF 183 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 ++++T+ RL+E++FLN + I+L D+R Sbjct: 184 ETTVYSFETVARRLQEMAFLNKGLTITLTDERVSDAEVTEEVVSQVADAPKTAEDESAEA 243 Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 + + Y GG+E +V +++R K+P+ S + +++AM+WN GY Sbjct: 244 GAPAVHKVKTRVYHYPGGLEDYVRHINRTKQPIHNSVVGFTAKGTGHELEIAMQWNSGYS 303 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V F N I +GGTH G RSALT + Y K+ + GDD REG +++ Sbjct: 304 ESVHTFANTINTHEGGTHEEGFRSALTATVNKYALDKKLLKEKDPKLTGDDIREGLAAII 363 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++EVRS V+ N+ LS W E +P +AK IV K + ++ R Sbjct: 364 SVKVGEPQFEGQTKTKLGNTEVRSFVQKASNEHLSHWFEANPADAKTIVNKAVSSAQARV 423 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+L RRK D+ LPGKLADC DP KSE+++VEGDSAGGSAK GR QAI Sbjct: 424 AARKARELVRRKSATDLGGLPGKLADCRSNDPSKSEIYIVEGDSAGGSAKSGRDSMYQAI 483 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPLRGKI+NVE+AR D++L + E+ ++ITA GTGI D FDI KLRYHKI++M DADVDG Sbjct: 484 LPLRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDG 542 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M L+ +G +Y+ +PPLY + ++ + D L+ L Sbjct: 543 QHIATLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRADPEFAYSDRERDALVKAGLES 602 Query: 571 EIELFCDSK 579 ++ D Sbjct: 603 GKKINKDDG 611 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L+ G+K I+ +QRYKGLGEMNA +LWETT++P R L V + DA+ AD+L Sbjct: 594 ALVKAGLESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADEL 652 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++VE RR FI N+ LD+ Sbjct: 653 FSVLMGEDVEARRSFITRNAKDVRFLDV 680 >gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis] Length = 737 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 277/650 (42%), Positives = 389/650 (59%), Gaps = 20/650 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD+ SYDA IQ+L+GLD V+KRP MYIG T G GLHH++YEVLDNAIDE+ G+A Sbjct: 88 SDSPAAKSYDAGQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEVLDNAIDEAQAGFA 146 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGG 119 I V + +DGS ++ D+GRGIPTDLH SA E ++T LHAGGKF +S Y VSGG Sbjct: 147 TNIDVIIFLDGSVSIMDDGRGIPTDLHPVTHKSALETVLTVLHAGGKFGGESSGYSVSGG 206 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFL 176 LHGVG+SVVNALS L++ + R+G + +F G L + G GT V F Sbjct: 207 LHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGKPVTELTSNEILGEFKFRQGTRVRFW 266 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233 P ++F+ F+Y+T+ R REL+FLN V+I+L + Y GG+ +V Sbjct: 267 PDKEVFTTTTEFDYNTIVGRARELAFLNPQVKITLKQENKDAENVTYNEYHYAGGLVEYV 326 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292 +L+R K P++ PI +D + +++A++W D Y + +L + N+I DGG+H+ G+ Sbjct: 327 CWLNRDKTPIL-KPISFTREKDGVIVNVALQWCSDAYTDTLLGYANSIRTSDGGSHMDGV 385 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 +SALTR + KS K+ ++ G+ REG T ++S+K+P P F QTK +L + EV Sbjct: 386 KSALTRTFNNLGRKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPEFEGQTKTRLGNPEV 445 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R +V+ V + L+ +LE +P + I+ K L+A AA++AR+L RRK VL ++LPG Sbjct: 446 RRIVDQAVQEYLTEYLECNPGVLESILSKALNAYKAAMAAKKARELVRRKSVLRPSALPG 505 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS DP+++E+F+VEG+SAGGSAKQGR R QAILPLRGKILNVER M ++ Sbjct: 506 KLADCSASDPREAEIFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 565 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI LI LG G+ + F + LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 566 EIQNLILGLGLGLKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEG 625 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFI 591 ++Y+ PPLY + RG+ Y DE+ L+ + G + L Sbjct: 626 YIYVGVPPLYKVERGRQAHYCFDEDELKKLQKTFPSNASYNIQRFKGLGEMMPLQLWET- 684 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVF---NCESDQEINVSLASKL 638 +D + + E ++ + E +E+ + ASK+ Sbjct: 685 ----TLDPATRKLKQLTVEDAAEANMVFSLLMGNRVEPRKELIENSASKI 730 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 66/344 (19%), Positives = 121/344 (35%), Gaps = 40/344 (11%) Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYV 553 R K+I D ++ G H+R L ++P G P + I +Y+ Sbjct: 398 RKSKLIKEKDENLSGEHVREGLTGIVSVKVPKPEFEGQTKTRLGNPEVRRIVDQAVQEYL 457 Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL------KIDKLIKDFYPN 607 + ++ LS+ + + + +L K+ Sbjct: 458 TEYLECNPGVLESILSKALNAYKAAMAAKKARELVRRKSVLRPSALPGKLADCSASDPRE 517 Query: 608 HDKTFIE----------------QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + +E QA++ + + + + K N I Sbjct: 518 AEIFIVEGESAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLILGLGLG 577 Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSL 707 + +I + ++G+ I + F +Y+R Sbjct: 578 LKGEDFKKDALRYHKII--ILTDADVDGAHIRTLLLTFFFRYQRALFEEGYIYVGVPPLY 635 Query: 708 ICNGDKIKITGPCSLLDTIFSI-----GRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + D + + ++QR+KGLGEM QLWETTL+P TR L Sbjct: 636 KVERGRQAHYCFDE--DELKKLQKTFPSNASYNIQRFKGLGEMMPLQLWETTLDPATRKL 693 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 ++ + DA++A+ +FS LMG+ VEPR+E I+ ++ + LDI Sbjct: 694 KQLTVEDAAEANMVFSLLMGNRVEPRKELIENSASKISIEKLDI 737 >gi|323694887|ref|ZP_08109037.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673] gi|323500977|gb|EGB16889.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673] Length = 637 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 289/584 (49%), Positives = 401/584 (68%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ D I V Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTS-MRGLHHLVYEIVDNAVDEALAGFCDTIEVQ 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV D+GRGIP D+ K+ GI A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INEDNSITVEDDGRGIPVDIQKKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186 VNALS WL++ I +EG +Y+ + G + PL V G D GT+VTFLP DIF Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVEGECPPDKHGTKVTFLPDKDIFEETV 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I L D R + ++ Y+GGI+ FV+YL++ + L Sbjct: 182 YDYDTLKIRLRETAFLTKNLRIVLRDDRDNKKEKV-FHYEGGIKEFVTYLNKSNEKLYAP 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G+++ + +++A++ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y K Sbjct: 241 VIYCEGTKEQVYVEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K ++ ++ G+D REG T+++S+K+ +P+F QTK+KL +SE R+ V++ V++ L+ Sbjct: 301 NKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVDAVVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AKII +K + A RDAAR+AR++TRRK VLD +LPGKLADCS+++ + E Sbjct: 361 FLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADCSDKNAENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK+ R++ NQAILPLRGKILNVE+AR D++ + EI +ITA GTGI Sbjct: 421 IYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAMITAFGTGIH 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ +PPLY + + Sbjct: 481 ED-FDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQPPLYKVEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 K + Y +E L L+ G + L Sbjct: 540 NKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760 L + ++ L + IGR + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591 Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV I + AS+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 592 ILLRVMIDNETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLDI 637 >gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144] gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144] gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909] Length = 643 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 302/639 (47%), Positives = 415/639 (64%), Gaps = 5/639 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 SHIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R G IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKADKEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +NY+TLQ R+REL+FLN +QI+L D+R E RE + Y+GGI+++V L+ +K Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLNENK 243 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR + Sbjct: 244 EPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY +S K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLF 363 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +IIV+K + AS R AA++AR++TRRK LD++SLPGKLADCS + Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +ITA Sbjct: 424 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PP Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY +T+GK YV ++ L+ + S G ++ + L + Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSM 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L D + ++ V + ++ + L Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 18/180 (10%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGL 742 R IE Y+ I L K + LD + K S+ RYKGL Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKQELNPSPK-WSIARYKGL 582 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 GEMNA QLWETT+NP+ RS+L+V++ DA AD F LMGD VE RR+FI++N++ + LD Sbjct: 583 GEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642 >gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor] gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor] Length = 729 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 269/597 (45%), Positives = 370/597 (61%), Gaps = 10/597 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + Y A ++Q+L+ LD V+ RP MYIG T G GLHH++YE+LDNA+DE G+ Sbjct: 81 MHEKRVAAEYTAANVQVLEALDGVRTRPGMYIGST-GPRGLHHLVYEILDNAVDEGQAGH 139 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118 A I V L+ D S +V+DNGRGIPTD+H + S E ++T +HAGGKF Y VSG Sbjct: 140 ASKIDVVLHDDNSVSVTDNGRGIPTDMHPQTKKSCVETVLTLMHAGGKFGGSKSGYSVSG 199 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175 GLHGVG+SVVNALS L++ + R+GN Y S+ G PL G GT + F Sbjct: 200 GLHGVGLSVVNALSEALEVTVWRDGNKYRQSYSRGKPTTPLSSITLTGETSPRQGTSIRF 259 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P DIF+ DF+++T+ R+REL+FLN + I+L + + Y GG+ +V Sbjct: 260 WPDKDIFTTTIDFDFNTISSRIRELAFLNPELTITLTKEEGHTVQHNEYCYAGGLVEYVK 319 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKPL PI + D I++D++++W+ D Y + VL + N+I DGGTH+ GL+ Sbjct: 320 WLNTDKKPLH-DPIAFRKELDGITVDVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLK 378 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR I ++ +KS K ++ G+ REG T V+S+K+P P F QTK +L + EVR Sbjct: 379 ASLTRTINNFAKKSKTIKDKDITLSGEHVREGMTCVISVKVPSPEFEGQTKTRLGNPEVR 438 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +VE V + L+ +LE HP I+ K L+A AA+RAR+L R K VL +S+PGK Sbjct: 439 RIVEQAVQENLTEYLELHPDVLDSILSKSLNALKASLAAKRARELVRSKSVLKSSSIPGK 498 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC+ +P++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++E Sbjct: 499 LADCASTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEE 558 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI ALG G+ + F LRYHKI+I+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 559 IQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 618 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK Y D+ L++ + + G + L Sbjct: 619 IYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPNASYHIQRFKGLGEMMPVQLWE 675 Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 8/181 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E E + ++ N + + K E ++ I++ V + Sbjct: 542 ILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVIL-TDADVDGAHIRT 600 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGIS 735 F F + I + + L + + + Sbjct: 601 LLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEIVNTFPPNA--SYH 658 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEM QLWETT++P+ R L ++K+ DA++A+ +FS LMG VE R++ IQE Sbjct: 659 IQRFKGLGEMMPVQLWETTMDPERRLLKQLKVEDAAEANVVFSSLMGSRVEYRKQLIQEA 718 Query: 796 S 796 + Sbjct: 719 A 719 >gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228] gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A] gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135] gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|38604835|sp|Q8CQK4|GYRB_STAES RecName: Full=DNA gyrase subunit B gi|81819302|sp|Q5HK03|GYRB_STAEQ RecName: Full=DNA gyrase subunit B gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228] gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A] gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060] gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135] gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus epidermidis M23864:W2(grey)] gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144] gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028] gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045] Length = 643 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 302/639 (47%), Positives = 415/639 (64%), Gaps = 5/639 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 SHIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R G IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDT-DKTGTAIRFKADKEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +NY+TLQ R+REL+FLN +QI+L D+R E RE + Y+GGI+++V L+ +K Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLNENK 243 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR + Sbjct: 244 EPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY +S K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLF 363 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +IIV+K + AS R AA++AR++TRRK LD++SLPGKLADCS + Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +ITA Sbjct: 424 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PP Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY +T+GK YV ++ L+ + S G ++ + L + Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSM 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L D + ++ V + ++ + L Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 18/180 (10%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSI---GRKGISMQRYKGL 742 R IE Y+ I L K + LD + K S+ RYKGL Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKQELNPSPK-WSIARYKGL 582 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 GEMNA QLWETT+NP+ RS+L+V++ DA AD F LMGD VE RR+FI++N++ + LD Sbjct: 583 GEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642 >gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175] gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175] Length = 645 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 279/594 (46%), Positives = 403/594 (67%), Gaps = 8/594 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ + YDA IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MTEENKAELAAQYDASQIQVLEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I + + + V+D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFATHIEIEITKENHIRVTDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +++ ++GNIYE S+ G + L + G + GT V F+P Sbjct: 120 GGLHGVGASVVNALSTDLTVQVFKDGNIYEQSYKRGAVLEDLKIIG-TTDKHGTSVYFVP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F +D L +R+REL+FLN +++++ D R EP + Y+GGI+++V +L Sbjct: 179 DPEIFQETTVFEFDKLANRVRELAFLNKGLKLTITDFRPEEPVRKSFCYEGGIKSYVEHL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 ++ K+ L + PI ++G +D I +++AM++ GYH N+L FTNNI +GGTH SG+++AL Sbjct: 239 NKSKQVLFEEPIYVEGEQDGIQVEVAMQYTSGYHTNLLSFTNNIHTYEGGTHESGMKTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y + K+++ + G+D REG T+V+SIK PDP+F QTK KL +SE R++ Sbjct: 299 TRVINDYARRQKLMKENEEKLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSEARTIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 + + +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 DRLFSTHFDKFLMENPQVARKIVEKGILASKARLAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNDPTISELFIVEGDSAGGSAKQGRSRHFQAILPIRGKILNVEKATLDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G D FD++K RY K++IMTDADVDG+HIRTLL+T F+R M + G++YI Sbjct: 479 LFTAMGTGFGGD-FDLSKARYQKLVIMTDADVDGSHIRTLLITLFYRYMRPAVEAGYIYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +PPLY + +GK+ Y+++++ LE L + G + L Sbjct: 538 AQPPLYKLKQGKNEYYIQNDKELEAKLKELPAHPKPQLSRYKGLGEMDAEQLWE 591 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 6/201 (2%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + ++ + + + S LV Sbjct: 447 RHFQAIL--PIRGKILNVEKATLDKILANEEIRSLFTAMGTGFGGDFDLSKARYQKLVIM 504 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + + + + I + L ++ I L + Sbjct: 505 TDADVDGSHIRTLLITLFYRYMRPAVEAGYIYIAQPPLYKLKQGKNEYYIQNDKELEAKL 564 Query: 727 FSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 + + RYKGLGEM+A QLWETT+NP+ RS+L+V + DA++AD + LMGD V Sbjct: 565 KELPAHPKPQLSRYKGLGEMDAEQLWETTMNPENRSMLQVSVEDAAEADQILDILMGDRV 624 Query: 786 EPRREFIQENSLPSA---LDI 803 EPRREFI+ N+ LDI Sbjct: 625 EPRREFIESNAKYINMEDLDI 645 >gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides ATCC 33313] gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides ATCC 33313] Length = 648 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 286/646 (44%), Positives = 404/646 (62%), Gaps = 17/646 (2%) Query: 1 MSDN------IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 M++ Q YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MAEEDVSQMHTQADDYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+A+ ITVT+ D S TV DNGRGIP D+ + G A E + T LHAGGKF Y Sbjct: 60 EALAGFANHITVTIEKDNSITVIDNGRGIPVDIQVKTGKPALETVFTILHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGTE 172 KVSGGLHGVG SVVNALS+ L + + R+G + M F G + + GT Sbjct: 120 KVSGGLHGVGASVVNALSTNLDVLVVRDGKGFAMDFERGHVKTEMHEIAIDDKPVSRGTI 179 Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F P DIF F+Y TL +R+REL+FLN ++IS+ D R EP + Y+GGI+ Sbjct: 180 VHFAPDPDIFRETTVFDYKTLMNRVRELAFLNKGLRISITDMRPEEPVVESFHYEGGIKE 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 +V +L+ +K + PI ++G ++I +++++++ D +H N+L FTNNI +GGTH +G Sbjct: 240 YVDFLNVNKDVIFNEPIYVEGMENDIDVEVSLQYTDDFHSNLLSFTNNIHTYEGGTHETG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 +SALTR I Y K+ K + + GDD REG T+++S+K PDP+F QTK KL +S+ Sbjct: 300 FKSALTRVINDYARKNKILKDNDDPLSGDDVREGLTAIVSVKHPDPQFEGQTKTKLGNSD 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R+ V+ ++ + ++ E+P AK IV+K + A R AA+RAR+ TR+K L+IA+LP Sbjct: 360 ARTAVDRMFSETFARFMMENPTTAKQIVEKGILAGKARMAAKRAREATRKKSGLEIANLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLAD + +DP+ SELF+VEGDSAGGSAKQGR R QAILP+RGKILNVE+A +K+L + Sbjct: 420 GKLADNTSKDPEISELFIVEGDSAGGSAKQGRERLTQAILPIRGKILNVEKASMEKILGN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI +L TA+GTG G FD+ K +YHK+IIMTDADVDGAHIRTLLLT +R M L+ Sbjct: 480 DEIRSLFTAMGTGFG-TDFDVTKAKYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEA 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNF 590 G++YI +PPLY + +GK ++Y+ + LE L S + I G + + L Sbjct: 539 GYVYIAQPPLYQVRQGKFIKYLDADSELEALLPTLPASPKPIIQRYKGLGEMDASQLWET 598 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D ++ IE +I + + + + Sbjct: 599 -----TMDPSVRRLLRVEMDDAIEADMIFSMLMGDKVEPRRKFIEE 639 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 44/68 (64%), Positives = 58/68 (85%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ASQLWETT++P R LLRV++ DA +AD +FS LMGD+VEPRR+FI+EN Sbjct: 581 IQRYKGLGEMDASQLWETTMDPSVRRLLRVEMDDAIEADMIFSMLMGDKVEPRRKFIEEN 640 Query: 796 SLPSALDI 803 + + LD+ Sbjct: 641 AQYAELDV 648 >gi|269118649|ref|YP_003306826.1| DNA gyrase subunit beta [Sebaldella termitidis ATCC 33386] gi|268612527|gb|ACZ06895.1| DNA gyrase, B subunit [Sebaldella termitidis ATCC 33386] Length = 642 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 265/597 (44%), Positives = 370/597 (61%), Gaps = 15/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSDN Y+A+SI +L+GL+AV+KRP MYIG T GLHH+++EV+DN++DE+L G+ Sbjct: 1 MSDN-----YNAESITVLEGLEAVRKRPGMYIGSTSA-KGLHHLVWEVVDNSVDEALAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V + D V DNGRGIP ++H++ G S EV++T LHAGGKFN +YKVSGGL Sbjct: 55 CDTIKVRVLEDNIIEVIDNGRGIPVEMHEKMGKSTLEVVLTVLHAGGKFNNDNYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179 HGVGVSVVNALS L+ I ++G ++ + G+ + + G A D GT + F Sbjct: 115 HGVGVSVVNALSETLEAIITKDGKVWYQKYHRGVPEEDIKQIGEAPEDAHGTTIRFKADG 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +++Y+ L RL+E+++LN ++I L D+R + + + G Sbjct: 175 EIFETLEYDYEILLTRLKEMAYLNKGLRIILSDERQKDKPKTDDLHFEGGIRDFLSEIAD 234 Query: 240 KKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 + ++ I + S + + +++AM + E V F NNI +GGTH+SG R+ Sbjct: 235 DERVLDDIIYMDDSVELDNKKRVEVEIAMTYTISQREMVYSFVNNINTHEGGTHVSGYRT 294 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR + ++ K S G D REG ++LSIK+P+P+F QTK KL +SE+ Sbjct: 295 ALTRVLNEISKQMGLVKDKDGSFQGSDVREGLVAILSIKIPEPQFEGQTKTKLGNSEITG 354 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 VV V L +LE+HP EA I++K+L + R+AA++AR+L RK L++ SLPGKL Sbjct: 355 VVSGIVGSSLKMYLEDHPKEASNIIEKILMSKKAREAAKKARELVLRKSSLEVGSLPGKL 414 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +D + E+++VEGDSAGGSAKQGR R QAILPLRGKILNVE+A + L + EI Sbjct: 415 ADCSSKDASECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGIGRALENAEI 474 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +ITA G G G D D+ KLRYHKIIIMTDADVDGAHIRTL+LTFF+R + LI+ G + Sbjct: 475 RAMITAFGAGFG-DEMDLEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRHLRELINEGHI 533 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI--ELFCDSKGVISKNDLRN 589 YI +PPLY + GK +QYV +E L+ + G ++ L Sbjct: 534 YIAQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKRYGIQRYKGLGEMNPEQLWE 590 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIK-ITGPCSL--LDTIFSIGRKGISM 736 + +F ++ R N L + G +I+ + L + + K + Sbjct: 515 LMLTFFYRHLRELINEGHIYIAQPPLYKVQAGKQIQYVYSDEQLQSVTKVMDQENKRYGI 574 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMN QLWETT++P+ R+LL+V + DA+ AD +F+ LMGD+VEPRR+FI+E++ Sbjct: 575 QRYKGLGEMNPEQLWETTMDPEVRTLLKVSLEDATYADKMFNVLMGDKVEPRRQFIEEHA 634 Query: 797 LPS-ALDI 803 LDI Sbjct: 635 QYVRNLDI 642 >gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B [Bacillus mycoides] Length = 631 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 280/585 (47%), Positives = 400/585 (68%), Gaps = 7/585 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY D I V Sbjct: 1 ENAYDESQIQVLEGLEAVRKRPGMYIGSTS-GKGLHHLVWEIVDNSIDEALAGYCDEINV 59 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S V+D+GRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHGVG S Sbjct: 60 SIEEDNSIVVTDDGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNAL + L++ + R+G I+ + G+ L V G + TGT F P S+IF+ Sbjct: 120 VVNALPTELEVFVHRDGKIHYQKYERGVPAADLKVIGET-DRTGTITRFKPDSEIFTETT 178 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + +DTL R+REL+FLN ++++++ DKR + ++ Y+GGI+++V +L+R K+P+ + Sbjct: 179 EYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE-FHYEGGIKSYVEHLNRSKQPIHE 237 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+ + GS+D I +++A+++N+GY ++ FTNNI +GGTH G ++ALTR I Y Sbjct: 238 EPVYVDGSKDGIQVEVALQYNEGYTNHIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGR 297 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R++ ES ++ Sbjct: 298 KNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFE 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P A+ I+ K A+ R AA++AR+LTRRK L+++SLPGKLADCS +DP S Sbjct: 358 KFLLENPNVARKIIDKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAIS 417 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPL+GKI+NVE+AR DK+LS+ E+ T+ITA+GT I Sbjct: 418 EIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNI 477 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G D F I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M +I G++Y +PPL+ + Sbjct: 478 GGD-FAIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIECGYIY-AQPPLFKVQ 535 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +GK +QY + + LE L + G ++ L Sbjct: 536 QGKKIQYAYNNKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWE 580 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 133/365 (36%), Gaps = 30/365 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQM 525 ++ G + K I+ DAD + G +R L + Sbjct: 267 SFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKH 326 Query: 526 PSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSEE 571 P+ G + + +++ + ++ +I+ + +++ Sbjct: 327 PNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKK 386 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 K + + L + D D I + Y + A + ++ + Sbjct: 387 ARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLK 446 Query: 632 VSLASKLANRLNFIAEKSEKSW-----------HGSINNSDILVKRIARGVQEQFVLEGS 680 + + RL+ I E +I + I + Sbjct: 447 GKIINVEKARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVDGAHIRT 506 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738 + +F +Y R L + G KI+ L+ I + + +QR Sbjct: 507 LLLTFFYRYMRQIIECGYIYAQPPLFKVQQGKKIQYAYNNKELEKILAELPAQPKPGIQR 566 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN +QLWETT++P+ RSLL+V + DA +AD+ F LMGD+VEPRR FIQEN+ Sbjct: 567 YKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKY 626 Query: 799 S-ALD 802 LD Sbjct: 627 VKNLD 631 >gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 640 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 294/641 (45%), Positives = 410/641 (63%), Gaps = 6/641 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTENYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADKIEVIIEKDNWIRVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ GI L V G + GTE+ F + Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNNKIYNQAYKRGIPQYDLKVIGETEH-NGTEIRFKADPE 178 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF + Y+ LQ R+REL+FLN +QISL D+R + Y+GGI+++V L+ Sbjct: 179 IFTETTTYQYEVLQKRIRELAFLNKGIQISLRDERDEDNIREDSYHYEGGIKSYVELLNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+PL P+ + +D++ +++A+++N G+ N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPLFDEPVYVHDRKDDVEVEIAIQYNSGFTTNLLSYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY KS K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR +V+ Sbjct: 299 VLNSYGTKSGLIKEDKERLSGEDTREGMTAIVSIKHEDPQFEGQTKTKLGNSEVRQIVDR 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + + +L EHP A+II++K L AS R AA++AR++TRRK L+++SLPGKLADCS Sbjct: 359 LSAEDMERFLYEHPQVARIIIEKGLMASRARIAAKKAREVTRRKSALEVSSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE++R D++L++ EI ++I Sbjct: 419 SKNPEESEIFLVEGDSAGGSTKLGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597 PPL+ +T+GK YV +E LE + G + + L + Sbjct: 538 PPLFKLTQGKQKYYVFNERELEKLKSELKPTPKWSISRYKGLGEMDADQLWETTMNPEHR 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L + + ++ V + ++ + L Sbjct: 598 SMLQVTLEDAIEADTTFEMLMGDVVENRRQFIEDNAVYANL 638 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 3/134 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + L+ + S Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLFKLTQGKQKYYVFNERE-LEKLKSEL 565 Query: 731 RK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788 + S+ RYKGLGEM+A QLWETT+NP+ RS+L+V + DA +AD F LMGD VE R Sbjct: 566 KPTPKWSISRYKGLGEMDADQLWETTMNPEHRSMLQVTLEDAIEADTTFEMLMGDVVENR 625 Query: 789 REFIQENSLPSALD 802 R+FI++N++ + LD Sbjct: 626 RQFIEDNAVYANLD 639 >gi|24379696|ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans UA159] gi|290580305|ref|YP_003484697.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025] gi|24377654|gb|AAN58957.1|AE014963_1 putative DNA gyrase subunit B [Streptococcus mutans UA159] gi|254997204|dbj|BAH87805.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025] Length = 650 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 284/628 (45%), Positives = 414/628 (65%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEENKNLDQLAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIQVFIEEDNSITVIDDGRGIPVDIQQKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ + G I+ + G++ L V G + TGT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYHRGVVAEDLKVIGDT-DITGTIVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++D L R++EL+FLN ++IS+ DKRS + R+ Y+GGI ++V Sbjct: 179 TPDPEIFTETTEFDFDKLAKRIQELAFLNKGLKISITDKRSGQERKEEFHYEGGIVSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +++ +K+ + PI GS D IS+++AM++ G+HEN++ F NNI +GGTH G R+ Sbjct: 239 FINENKEVIFDKPIYTDGSLDGISVEVAMQYTTGFHENIMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ GDD REG T+++S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENEDNLNGDDVREGLTAIISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D L+ +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDALNRFLLENPQIAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS DP ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDPIQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSKSRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YGI G ++ + ++ + ++L E SK + + +DD Sbjct: 538 YIAQPPIYGIKVGSDIKEYIQPGNDQEEKLQEAL--EKYSQGRSKPTVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMNPDNRLMARVSLDDAAEADKI 623 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G+ + L+ +S GR ++QRYKGLGEM+ QLWETT+NPD Sbjct: 548 KVGSDIKEYIQPGNDQE-EKLQEALEK-YSQGRSKPTVQRYKGLGEMDDHQLWETTMNPD 605 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRR FI+EN++ S LD+ Sbjct: 606 NRLMARVSLDDAAEADKIFDMLMGDRVEPRRGFIEENAVYSTLDV 650 >gi|282881781|ref|ZP_06290439.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B] gi|281298391|gb|EFA90829.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B] Length = 639 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 283/592 (47%), Positives = 379/592 (64%), Gaps = 8/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YDA IQ+LKGL+ V+KRP MYIG T GE GLHH++YEV+DN+IDE+L G Sbjct: 1 MAEK--KRHYDAGDIQVLKGLEPVRKRPGMYIGST-GEKGLHHLVYEVVDNSIDEALAGI 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I + + +GSC V DNG GIP ++H + G S E ++T LHAGGKF+ K+YKVSGGL Sbjct: 58 CDHIKIVITKNGSCYVEDNGSGIPVEIHPQTGKSTVETVLTILHAGGKFDNKAYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVGVSVVNALS+ LK IKR G IY F G + L G N TGT++ F P Sbjct: 118 HGVGVSVVNALSTHLKATIKRNGKIYSQEFQRGKAISSLKEIGKVDKNQTGTKIEFTPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +F++D L R RE++FLN ++I D+R + + Sbjct: 178 EIFDTVEFSFDILSKRFREMAFLNKGIKIDFTDERINKNEIYHYEGGIKSFVEYINSKKK 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +P+ I I R+N SI++A+++ Y E VL F NNI ++GG+HLSG RSA+T+ Sbjct: 238 YEPIHDEIIYIDEIRENTSIEVAIQYTKSYSEEVLTFANNINTEEGGSHLSGFRSAITKT 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + Y K K+ + ++ GDD REG T+VLS+K+P+P+F QTK KL +SE + VV+S Sbjct: 298 VNDYGRKYNFIKEKEENLSGDDIREGMTAVLSVKLPNPQFEGQTKAKLGNSETKGVVDSV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ LS +LEE+P +K I++K + A RDAARRAR+++R K L +LPGKL DCS+ Sbjct: 358 VSEKLSMFLEENPKTSKAILEKAVAARRARDAARRAREISRAKNNL-DMTLPGKLFDCSD 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +KSE+FLVEG+SAGGSAK GR E QA+LPLRGKI+NVE+A KML+S EI +IT Sbjct: 417 VGSEKSEIFLVEGNSAGGSAKDGRDPEFQAVLPLRGKIMNVEKATEAKMLNSSEIKAMIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTG FDI+KLRY+KIIIMTDADVDGAHI TLLLTFFFR M LI NG +Y+ + Sbjct: 477 AFGTGY-AGEFDISKLRYNKIIIMTDADVDGAHIMTLLLTFFFRYMRPLIENGHVYVAQA 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRN 589 PLYG+ + + E + + SE+ G ++ + L Sbjct: 536 PLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKRYKGLGEMNYDQLWE 587 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E + +S++ + + S + ++ V ++ Sbjct: 454 IMNVEKATEAKMLNSSEIKAMITAFGTGYAGEFDISKLRYNKIIIMTDADVDGAHIMTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQR 738 F F I + + + L N ++ L + + K I+++R Sbjct: 514 LTFFFRYMRPLIENGHVYVAQAPLYGLEKNSKILRYCHNEEELNLALKAHESEKNINIKR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT+NPD R LLRV I D + DD F LMG EVEPRREFI EN+ Sbjct: 574 YKGLGEMNYDQLWETTMNPDNRLLLRVNIEDFDETDDTFQMLMGQEVEPRREFISENAQY 633 Query: 799 SA 800 + Sbjct: 634 AD 635 >gi|313904729|ref|ZP_07838103.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6] gi|313470522|gb|EFR65850.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6] Length = 645 Score = 575 bits (1482), Expect = e-161, Method: Composition-based stats. Identities = 286/588 (48%), Positives = 386/588 (65%), Gaps = 4/588 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY Sbjct: 6 TVVTNEYGADQIQILEGLEAVRKRPGMYIG-TTSIRGLHHLVYEIVDNSVDEALAGYCSH 64 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV D+GRGIP ++K+ GI A EV+ T LHAGGKF YKVSGGLHGV Sbjct: 65 IEVTINQDNSITVVDDGRGIPVGINKKAGIPAVEVVFTVLHAGGKFGGGGYKVSGGLHGV 124 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIF 182 G SVVNALS WL+++I +G IY+ + G L V G TGT V F P IF Sbjct: 125 GASVVNALSDWLEVQIYHDGKIYKQRYERGKTMYKLKVVGECDPEKTGTRVDFKPDGTIF 184 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +++ TL+ RLRE +FL ++I+L D R + +E Y+GGI+ FV YL++ + Sbjct: 185 EETVYDFKTLKTRLRETAFLTKGLKITLRDAREGQEQEKVFHYEGGIKEFVQYLNKSNEG 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L Q + +G ++++ ++++M+ ND Y+E V F NNI +GG H+ G R ALTR Sbjct: 245 LYQDILYFEGVQNDVVVEVSMQHNDSYNETVYGFVNNILTPEGGMHVMGFRQALTRTFND 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE RS V++ V+ Sbjct: 305 YGRKMKLLKDNDENLSGEDIREGLTAIISVKIGDPQFEGQTKQKLGNSEARSAVDAVVSK 364 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +LE+HP K I++K L + R+AAR+ARDLTRRK LD +LPGKLADCS++DP Sbjct: 365 QLGIYLEQHPDVGKTIIEKSLVSQRAREAARKARDLTRRKTALDGLALPGKLADCSDKDP 424 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAK R+R QAILPLRGKILNVE+AR D++ + EI ++ITA G Sbjct: 425 KHCEIFIVEGDSAGGSAKVARNRRTQAILPLRGKILNVEKARLDRIYGNAEIRSMITAFG 484 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI D FD++KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI +G +Y+ KPPLY Sbjct: 485 TGI-HDDFDLSKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPELIKSGHVYLAKPPLY 543 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + R K + Y +E L + G + + L Sbjct: 544 KVERNKKVWYAYSDEELNKIMNEIGRDGGNRIQRYKGLGEMDADQLWE 591 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ L+ I + GR G + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 540 PPLYKVERNKKVWYAYSDEELNKIMNEIGRDGGNRIQRYKGLGEMDADQLWETTMDPENR 599 Query: 761 SLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV + DAS+ D F+ LMGD+VEPRREFI+E + LDI Sbjct: 600 VLLRVNMDDDDASEIDLTFTTLMGDKVEPRREFIEERAKDVQNLDI 645 >gi|323486745|ref|ZP_08092064.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum WAL-14163] gi|323399884|gb|EGA92263.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum WAL-14163] Length = 637 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 289/584 (49%), Positives = 401/584 (68%), Gaps = 5/584 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ D I V Sbjct: 3 SEYSADQIQILEGLEAVRKRPGMYIGSTS-MRGLHHLVYEIVDNAVDEALAGFCDTIEVQ 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S TV D+GRGIP D+ K+ GI A EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 INEDNSITVEDDGRGIPVDIQKKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQD 186 VNALS WL++ I +EG +Y+ + G + PL V G D GT+VTFLP DIF Sbjct: 122 VNALSEWLEVEIYKEGKVYKQRYERGKVMCPLRVDGECPPDKHGTKVTFLPDKDIFEETV 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 ++YDTL+ RLRE +FL +++I L D R + ++ Y+GGI+ FV+YL++ + L Sbjct: 182 YDYDTLKIRLRETAFLTKNLRIVLRDDRDNKKEKV-FHYEGGIKEFVTYLNKSNEKLYAP 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G+++ + +++A++ ND Y EN+ F NNI +GGTHL+G ++ALT+ Y K Sbjct: 241 VIYCEGTKEQVYVEVAVQHNDSYTENIYTFVNNINTPEGGTHLTGFKNALTKTFNDYARK 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K ++ ++ G+D REG T+++S+K+ +P+F QTK+KL +SE R+ V++ V++ L+ Sbjct: 301 NKLLKDNEPALSGEDIREGITAIISVKIEEPQFEGQTKQKLGNSEARTAVDAVVSEQLTY 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P AKII +K + A RDAAR+AR++TRRK VLD +LPGKLADCS+++ + E Sbjct: 361 FLEQNPSVAKIICEKSILAKRARDAARKAREMTRRKSVLDGMALPGKLADCSDKNAENCE 420 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +++VEGDSAGGSAK+ R++ NQAILPLRGKILNVE+AR D++ + EI +ITA GTGI Sbjct: 421 IYIVEGDSAGGSAKEARNKSNQAILPLRGKILNVEKARLDRIYGNAEIRAMITAFGTGIH 480 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 +D FDI KLRY+KIIIMTDADVDGAHI TLLLTF +R MP LI G +Y+ +PPLY + + Sbjct: 481 ED-FDIEKLRYNKIIIMTDADVDGAHISTLLLTFLYRFMPELIRQGHVYLAQPPLYKVEK 539 Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 K + Y +E L L+ G + L Sbjct: 540 NKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWE 583 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTR 760 L + ++ L + IGR + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 532 PPLYKVEKNKRVWYAYSDEELNSILMEIGRDTNNKIQRYKGLGEMDAEQLWETTMDPERR 591 Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV I + AS+ D F+ LMGD+VEPRREFI+ N+ LDI Sbjct: 592 ILLRVMIDNETASEVDLTFATLMGDQVEPRREFIEANAKYVQNLDI 637 >gi|254410831|ref|ZP_05024609.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420] gi|196182186|gb|EDX77172.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420] Length = 856 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 292/845 (34%), Positives = 441/845 (52%), Gaps = 59/845 (6%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV++RP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSSYSADQIQVLEGLEAVRRRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 N DGS +V+D+GRGIPTD H + G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 DFNSDGSVSVTDDGRGIPTDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+ + + RE ++ + GI L V S N TGT VTF P + IF+ Sbjct: 121 VVNALSEWVDVTVWREKKVHTQRYERGIAMGELAVKPSKENRTGTSVTFKPDTQIFTNGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y T+ RLREL++LN V+I+ D R + + Y+GGI+ +V Y++R K+PL Q Sbjct: 181 EFDYSTVAGRLRELAYLNGGVRITFTDHRISPEHQDSYHYEGGIQEYVGYMNRQKEPLHQ 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +QG R+N+ +++A++W D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 241 EIIYVQGERNNVQVEVALQWCVDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTLNAIA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+ + ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKLKESESNLGGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +LE P A +++K + A +AARRAR+L RRK VL+ + LPGKLADCS RDP + Sbjct: 361 TEYLEFRPQVADSVLEKAIQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSSRDPAE 420 Query: 425 SELFLVEGDSAGG--------SAKQGRSRENQAILPLR--GKILNVERARFDKMLSSQEI 474 SE+F+VEGDSAGG + GRS + I+ + GK R D + + I Sbjct: 421 SEIFIVEGDSAGGCFDGDTRVALADGRSLSFKEIVAEQAMGKEHFCYTIRHDGKIGLERI 480 Query: 475 GT--LITALGTGI-------------GQDSFDINKLRYHKIIIMTDAD------------ 507 + A I F + Y ++T D Sbjct: 481 IHPRITKANAQVIQVTLDNGETLICTPDHPFMVRDGSYKAAALLTPEDFLMSLNAKLSER 540 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYI-IKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 G + + F ++ + + + P G SL+ + ++ + Sbjct: 541 SRGQRLAEIDAAGFNTRLSEVAFSRDVQANAVYPTVGAVGTPSLRPPHSGQDTKESSVAL 600 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDA----------LKIDKLIKDFYPNHDKTFIEQA 616 + EE D+ V++ L +D + + QA Sbjct: 601 LVREESPSRKDNHRVVAIERLEKRVDVYDIEVPHTHNFALASGVFVHNSAKQGRDRQFQA 660 Query: 617 VI---SGVFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGV 671 ++ + N E + + +++ + + + K E+ ++ I++ V Sbjct: 661 ILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDPSNLRYHRIVI-MTDADV 719 Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-- 729 + F + + + I + + + L + + + Sbjct: 720 DGAHIRTLLLTFFYRYQRALVDQGYIHIACPPLYKVERGRNHYYCYSDRELTNLVQNEFP 779 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 ++QR+KGLGEM QLW+TT+NP+TR++ RV+I DA++AD +F+ LMGD V PRR Sbjct: 780 ANANYTIQRFKGLGEMMPVQLWDTTMNPETRTMKRVEIEDAAEADRIFTVLMGDRVAPRR 839 Query: 790 EFIQE 794 EFI+ Sbjct: 840 EFIET 844 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 8/209 (3%) Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497 SAKQGR R+ QAILPLRGKILN+E+ K+ + EI +LITALG GI + FD + LRY Sbjct: 649 SAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNTEIQSLITALGLGIKGEEFDPSNLRY 708 Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557 H+I+IMTDADVDGAHIRTLLLTFF+R +L+ G+++I PPLY + RG++ Y + Sbjct: 709 HRIVIMTDADVDGAHIRTLLLTFFYRYQRALVDQGYIHIACPPLYKVERGRNHYYCYSDR 768 Query: 558 SLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 L + + N+ + G + L + ++ + + E Sbjct: 769 ELTNLVQNEFPANANYTIQRFKGLGEMMPVQLWDT-----TMNPETRTMKRVEIEDAAEA 823 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNF 644 I V + +RL+ Sbjct: 824 DRIFTVLMGDRV-APRREFIETYGSRLDL 851 >gi|160944260|ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii M21/2] gi|158444442|gb|EDP21446.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium prausnitzii M21/2] Length = 664 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 270/607 (44%), Positives = 381/607 (62%), Gaps = 23/607 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + + Y+A IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY Sbjct: 11 ADTVTDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 D I V + D V+DNGRGIP D+ + G+ A V+ T LHAGGKF YKV+GG Sbjct: 70 DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178 LHGVG SVVNA S WL + ++R+G YE +F G D L G+ A TGT VTF P Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGDLKCIGTVAEGVTGTRVTFKPD 189 Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR-------------SPEPREITMF 224 ++F +++DTL+ RLRE SFLN+ V+I+L D+R P R M Sbjct: 190 PEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRSEVMC 249 Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 Y+GGI++FV+Y R + L + I ++G D ++A+++N Y+E +L F NN+ Sbjct: 250 YEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTDRGVAEIALQYNSSYNELLLSFANNVNT 309 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 DGGTH G +++LTR Y K ++ G D REG V+S+K+ + F Q Sbjct: 310 PDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E+R++V + V L + EE+P AK I +K A+ R AA++AR+L RRK Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR QAILPL GK+LNVE+ Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+ + ++ ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M LI G +Y+ +PPL+ + +G +++Y ++ + +++Q + G + Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEM 606 Query: 583 SKNDLRN 589 + L Sbjct: 607 NPEQLWE 613 Score = 162 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L + G+ IK + + + G + RYKGLGEMN QLWETT+NPD R + Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+ + LD+ Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664 >gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 653 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 287/601 (47%), Positives = 402/601 (66%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51 M+D + + YDA IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN Sbjct: 1 MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59 Query: 52 AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111 IDE+L G+A I V +N D S TV+D+GRGIP D+ + G A E + T LHAGGKF Sbjct: 60 GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170 YKVSGGLHGVG SVVNALS+ L + + R G Y + FI G ++ P+ V G+A ++ G Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHG 179 Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T+V FLP DIF+ F+ L R+REL+FLN ++++ DKR+ ++ Y+GG+ Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +++V +L K+ L+Q PI ++G I+++ A+++ + YH +L F NNI +GGTH Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEFALQYTNDYHSTLLTFANNIHTYEGGTHE 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G ++ALTR I Y +S K + GDD REG T+V+S+K PDP+F QTK KL + Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+ R+VV+ +D + +L EHP + K+I+ K + AS R AA+RAR++TR+K L+I++ Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +++L Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +++EI TL TA+GTG G FDINK RYHK+IIMTDADVDGAHIRTLLLT +R M ++ Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588 G++YI +PPLY + +GK QY+ +E L+D L S + G + N L Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598 Query: 589 N 589 Sbjct: 599 E 599 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+A+QLWETT++PD R LLRV DA AD +F LMGD VEPRR+FI++ Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641 Query: 795 NSLPS---ALD 802 N++ +D Sbjct: 642 NAVFVDPNNID 652 >gi|118470463|ref|YP_885621.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] gi|118171750|gb|ABK72646.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 639 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 274/642 (42%), Positives = 389/642 (60%), Gaps = 6/642 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YDA SI IL+GLD V+KRP MYIG T E GLHHM++EV+DN +DE++ G+A + Sbjct: 1 MSTTNYDAGSITILEGLDVVRKRPGMYIGSTS-ERGLHHMVWEVVDNGVDEAMAGHATRV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DG V D+GRGIP +H E GI +V+MT+LHAGGKF+ +SY+VSGGLHGVG Sbjct: 60 DVTLLADGGVQVCDDGRGIPVAMH-ETGIPTVDVVMTQLHAGGKFDSESYQVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 VSVVNALS+ L++ I R+G + + + + L G+ TGT V F D+F Sbjct: 119 VSVVNALSTRLEVDIHRDGYEWHQHYDHSVPAT-LTR-GNPSGGTGTTVRFWADPDVFET 176 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 ++ +T+ RL+E++FLN + ++L D+R PEP+ T + GG+ +V +++R K P+ Sbjct: 177 TTYSAETIARRLQEMAFLNKGLILTLTDQRDPEPQTRTFHHPGGLIDYVKHINRVKDPIQ 236 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I +G +++AM+WN GY E+V F N I +GGTH G R+ALT + Y Sbjct: 237 PSIIAFEGEGPGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYA 296 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + K ++ GDD REG +V+S+K+ +P+F QTK KL ++ +RS V+ ++ L Sbjct: 297 KDKKLLKDKDPNLTGDDIREGLAAVISVKVAEPQFEGQTKTKLGNAAIRSFVQKVCHEQL 356 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + WLE +P+EAK+I+ KV ++ R AAR+AR+L RRK DI LPGKLADC DP K Sbjct: 357 THWLEANPVEAKVIITKVASSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPSK 416 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEGDSAGGSAK GR QAILPLRGKI+NVE+AR D++L + E+ ++ITALGTG Sbjct: 417 SELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQSIITALGTG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I D FDI+KLRYHKI++M DADVDG HI TLLLT FR M L+ NG +++ +PPLY + Sbjct: 477 I-HDEFDISKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKL 535 Query: 545 TRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 +S ++ + + L + + D + + Sbjct: 536 KWQRSEPEFAYSDRERDGLLEAGRAAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVR 595 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 A D E ++ A + F+ Sbjct: 596 VLRQVTLDDAAAADELFSILMGDDVEARRGFITRNAKDIRFL 637 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 554 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 612 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMGD+VE RR FI N+ LDI Sbjct: 613 SILMGDDVEARRGFITRNAKDIRFLDI 639 >gi|50379847|gb|AAT76294.1| DNA gyrase subunit B [Fusobacterium canifelinum] Length = 522 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 248/526 (47%), Positives = 354/526 (67%), Gaps = 6/526 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + SY+A +I +L+GL+AV+KRP MYIG T E GLHH+++E++DN++DE+L GY Sbjct: 1 MEEIM---SYEAQNITVLEGLEAVRKRPGMYIG-TTSERGLHHLVWEIVDNSVDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V + + V DNGRGIPTD+H + G SA E+++T LHAGGKF +YKVSGGL Sbjct: 57 CNKIEVKILSENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVLHAGGKFENDNYKVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVGVSVVNALS WL+ +++ G +Y + G + + + GS ++ GT V F Sbjct: 117 HGVGVSVVNALSEWLEAEVRKNGVVYYQKYHRGKPEEDVKIIGSCDESEHGTIVRFKADG 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +NY TL +RL+EL++LN + I L D R E +E + GGI F++ + + Sbjct: 177 EIFETLIYNYFTLSNRLKELAYLNKGLTIVLSDLRKEEKKEEIYKFDGGILDFLNEIVKE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + +++ P + +DN+ +D+ + +E + F NNI +GGTH+ G R+ALT+ Sbjct: 237 EATIIEKPFYVSSEQDNVGVDVTFTYTTSQNEVIYSFVNNINTHEGGTHVQGFRTALTKV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I + K ++G+D REG ++S K+P P+F QTK KL +SEV +V + Sbjct: 297 INDVGKAQGLLKDKDGKLMGNDIREGVVGIVSTKIPQPQFEGQTKGKLGNSEVSGIVNTI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L +LE++P KII++K+L++ R+AA++AR+L RK VL++ SLPGKLADC+ Sbjct: 357 VSNSLKIFLEDNPNITKIIIEKILNSKKAREAAQKARELVLRKSVLEVGSLPGKLADCTS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + ++ E+F+VEGDSAGGSAKQGR R NQAILPLRGKI+NVE+A K L S EI ++T Sbjct: 417 KKAEECEIFIVEGDSAGGSAKQGRDRYNQAILPLRGKIINVEKAGLHKSLESSEIRAMVT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 A GT IG+ FDI KLRY KII+MTDADVDGAHIRTL+LTF +R M Sbjct: 477 AFGTSIGET-FDIAKLRYGKIILMTDADVDGAHIRTLILTFLYRYM 521 >gi|271961616|ref|YP_003335812.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270504791|gb|ACZ83069.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 647 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 284/566 (50%), Positives = 377/566 (66%), Gaps = 12/566 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I VTL Sbjct: 2 SYDASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADRIEVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D V DNGRGIP + + EG A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV Sbjct: 61 LADNGVRVVDNGRGIPVGIVEAEGRPAVEVVLTVLHAGGKFDSKSYAVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS L++ I+ +G+ ++ S+ +PL V G A +TGT +TF S IF +N Sbjct: 121 NALSSKLEVEIRTDGHHWQQSYAETRPLHPL-VKGEATEETGTSITFWADSTIFETTTWN 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----MFYKGGIEAFVSYLDRHKKPLM 244 ++TL R +E++FLN + ISL D+R Y+GG+ FV +L+ K+P Sbjct: 180 FETLSRRFQEMAFLNKGLTISLRDERPDHINGEPKEATYHYEGGLSDFVKHLNSKKEPAH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + S + IS+++AM+WN+ Y E+V F N I +GGTH G R+ALT + Y Sbjct: 240 VSVIDFEESGEGISVEIAMQWNNSYSESVYTFANTINTAEGGTHEEGFRAALTSIVNRYA 299 Query: 305 EKSFGSKK-DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ ++ G+D REG T+++S+K+ DP+F QTK KL ++E +S V+ ND Sbjct: 300 REQKFLKEGKDDNLAGEDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKACNDH 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADCSERDP 422 L W E +P EAK I+ K L AS R AAR+ARDLTRRK +L+ + LPGKLADC DP Sbjct: 360 LRDWFERNPGEAKDIINKSLQASRARLAARQARDLTRRKSLLESGSGLPGKLADCQWSDP 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +K ELF+VEGDSAGGSAK GR + QAILP+RGKILNVE+AR DK+L + E+ LITA+G Sbjct: 420 EKCELFIVEGDSAGGSAKGGRDSKFQAILPIRGKILNVEKARIDKVLRNTEVQALITAMG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG+ D FDI KLRYHK+I+M DADVDG HI TLLLT FR M LI G +Y+ +PPLY Sbjct: 480 TGV-HDEFDITKLRYHKLILMADADVDGQHINTLLLTLLFRFMRPLIEAGHVYLSQPPLY 538 Query: 543 GITRGKSLQ---YVKDEESLEDYLIN 565 I + + Y + + + + Sbjct: 539 KIKWDRRGEDASYAYSDPERDAIIAD 564 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNASQLWETT+NP+TR L V + DA+QAD+LFS LMG++VE RR FI N Sbjct: 579 IQRFKGLGEMNASQLWETTMNPETRVLRLVTLDDAAQADELFSVLMGEDVEARRSFIIRN 638 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 639 ARDVRFLDV 647 >gi|167759582|ref|ZP_02431709.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704] gi|167662809|gb|EDS06939.1| hypothetical protein CLOSCI_01939 [Clostridium scindens ATCC 35704] Length = 644 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 292/592 (49%), Positives = 391/592 (66%), Gaps = 5/592 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ Sbjct: 1 MGTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V++N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CDTILVSINKDNSITVVDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I +G IY+ + G + L V G + TGT+VTF P Sbjct: 120 HGVGASVVNALSDWLEVEIFSKGKIYKQRYERGKVAQKLAVIGECEPDKTGTKVTFFPDD 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF +F+YD L+ R RE++FL ++I L D+R E Y+GGI+ FV YL+R Sbjct: 180 TIFEETEFDYDILKQRFREMAFLTKGLKIILRDERPEEEPIEKVFHYEGGIKQFVEYLNR 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K PL + I +G + +++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Sbjct: 240 SKTPLYEDIIYCEGMANGVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTK 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y K+ + ++ ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+S Sbjct: 300 TFNDYARKNKLLRDNEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDS 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V++ L +LE++P AK+ ++K + A R+AAR+ARDLTRRK LD SLPGKLADCS Sbjct: 360 IVSNQLVVYLEQNPSIAKMTIEKSVMAQRAREAARKARDLTRRKSALDGMSLPGKLADCS 419 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++DPK E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ + EI +I Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMI 479 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGI D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ + Sbjct: 480 TAFGTGI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYMAQ 538 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 PPLY + + K + Y +E L+ L G + L + Sbjct: 539 PPLYKLEKNKKVWYAYSDEELDGILTEVGRDGNNKIQRYKGLGEMDAEQLWD 590 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G ++ DI R + + ++G+ I + + R + I+E Y L Sbjct: 484 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYMAQPPLYK 543 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ LD I + GR G + +QRYKGLGEM+A QLW+TT++P+ R LLRV Sbjct: 544 LEKNKKVWYAYSDEELDGILTEVGRDGNNKIQRYKGLGEMDAEQLWDTTMDPEHRVLLRV 603 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+EN+ LD+ Sbjct: 604 TMDEETTSELDLTFTTLMGDKVEPRREFIEENAKYVKNLDV 644 >gi|55981555|ref|YP_144852.1| DNA gyrase subunit B [Thermus thermophilus HB8] gi|55772968|dbj|BAD71409.1| DNA gyrase, subunit B [Thermus thermophilus HB8] Length = 634 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 273/585 (46%), Positives = 372/585 (63%), Gaps = 7/585 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I V L Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV DNGRGIP DL EEG A EVI T LH+GGKF Q +YKVSGGLHGVG SVV Sbjct: 61 NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187 NALS W + + REG + ++F G + PL V G A TGT VTF P +IF F Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + ++ RLRE+++L + +++ D++ + KGG+ +F L + L + P Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I+G+ + +++ GY+ +L + N IP +DGGTHL+ +SA +R + Y +K+ Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +K+ GDD EG +V+S+K+P+P+F QTK KL++ E + V V + L Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE+P AK + +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P+++EL Sbjct: 359 LEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPEEAEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-- 485 F+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ +++A+G GI Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGVGIGG 478 Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 G+ FD+ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +PPLY + Sbjct: 479 DGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRL 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 GK ++Y+ +E L+ L G ++ L Sbjct: 539 QVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWE 583 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 72/159 (45%) Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 I E + ++ V + F + I + + Sbjct: 476 IGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPL 535 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 L + L + + K +QR+KGLGEMN QLWETT+NP+ R L R Sbjct: 536 YRLQVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWETTMNPEKRVLKR 595 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 V++ DA +A +LF +LMG EV PRREFI+E++ + LDI Sbjct: 596 VELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 634 >gi|191636829|ref|YP_001985995.1| DNA gyrase, B subunit [Lactobacillus casei BL23] gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang] gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23] gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang] gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei LC2W] gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus casei BD-II] Length = 653 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 287/601 (47%), Positives = 403/601 (67%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51 M+D + + YDA IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN Sbjct: 1 MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59 Query: 52 AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111 IDE+L G+A I V +N D S TV+D+GRGIP D+ + G A E + T LHAGGKF Sbjct: 60 GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170 YKVSGGLHGVG SVVNALS+ L + + R G Y + FI G ++ P+ V G+A ++ G Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNTPMKVIGTAPEHEHG 179 Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T+V FLP DIF+ F+ L R+REL+FLN ++++ DKR+ ++ Y+GG+ Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +++V +L K+ L+Q PI ++G I++++A+++ + YH +L F NNI +GGTH Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHE 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G ++ALTR I Y +S K + GDD REG T+V+S+K PDP+F QTK KL + Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+ R+VV+ +D + +L EHP + K+I+ K + AS R AA+RAR++TR+K L+I++ Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +++L Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +++EI TL TA+GTG G FDINK RYHK+IIMTDADVDGAHIRTLLLT +R M ++ Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588 G++YI +PPLY + +GK QY+ +E L+D L S + G + N L Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598 Query: 589 N 589 Sbjct: 599 E 599 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+A+QLWETT++PD R LLRV DA AD +F LMGD VEPRR+FI++ Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641 Query: 795 NSLPS---ALD 802 N++ +D Sbjct: 642 NAVFVDPNNID 652 >gi|154482535|ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC 27560] gi|149736560|gb|EDM52446.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC 27560] Length = 635 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 255/587 (43%), Positives = 370/587 (63%), Gaps = 10/587 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +SI +L+GLD V+KRP MYIG G GL+H+IYE++DN++DE L GY ITVT Sbjct: 3 NNYDGNSISVLEGLDPVRKRPGMYIGSV-GTKGLNHLIYEIVDNSVDEHLAGYCSEITVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L DGS TV DNGRGIP D++++ G A EV+ T LHAGGKF +YK+SGGLHGVG SV Sbjct: 62 LEKDGSATVEDNGRGIPVDINEQVGRPAVEVVFTTLHAGGKFGDGNYKISGGLHGVGSSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQD 186 VNALS WL++ +KR+G IY + G + L G NDTGT+V+F P ++IF Sbjct: 122 VNALSLWLEVNVKRDGKIYNQRYEQGKVCYDLKEAGKCRKNDTGTKVSFFPDAEIFEKIY 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F D+++ RL E ++LN ++ I I+KR E E+T + GI+AF+S +++ K+ + Sbjct: 182 FKADSIKSRLHETAYLNPNLTIIFINKRVGEEEEVTFHEENGIKAFISDMNKEKEKVT-D 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I + +D I +++A ++ + + EN+ F NNI ++GGTH++G +S LT I Y + Sbjct: 241 IIYFKKEQDGIEVEIAFQYINDFTENISGFCNNIYTQEGGTHITGFKSILTSTINQYARE 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ + G D R G +V+++K PDPRF QTK KL + + V +S + L+ Sbjct: 301 LGILKEKDNNFTGADVRNGLVAVVAVKHPDPRFEGQTKTKLDNPDAEKVTKSIAGEQLTL 360 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + +++ K ++ ++ +R A R + K I S GKL++C R P++ E Sbjct: 361 FFDKNLETLKNVISCAEKSAKIRKAEERTKTNLLSKSKFSIDS-NGKLSNCESRKPEECE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 +F+VEGDSAGGSAK R+R+ QAI+P+RGKILNVE+A DK+L++ EI T+I A G G Sbjct: 420 IFIVEGDSAGGSAKSARNRKTQAIMPIRGKILNVEKASMDKVLANAEIKTMINAFGCGFS 479 Query: 487 Q---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 + + FDI KLRY+KII+MTDADVDGAHI TLLLTFF+R MP LI +G +YI PPLY Sbjct: 480 EGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLLLTFFYRFMPELITHGHIYIATPPLYK 539 Query: 544 -ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + + +Y+ D+++LE Y + + G + L Sbjct: 540 VVPKKGEGEYLYDDKALEKYRKHH--TGFTLQRYKGLGEMDPKQLWE 584 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 112/307 (36%), Gaps = 24/307 (7%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DA+ I LT FF + + N I R + + S + I Sbjct: 345 DAEKVTKSIAGEQLTLFFDKNLETLKN---VISCAEKSAKIRKAEERTKTNLLSKSKFSI 401 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 + + + + FI + K + + + + N Sbjct: 402 DSNGK------LSNCESRKPEECEIFIVEGDSAGGSAKSARNRKTQAIM--PIRGKILNV 453 Query: 625 ESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR----GVQEQFVLEGS 680 E V +++ +N + + + + +I V + Sbjct: 454 EKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDIEKLRYNKIILMTDADVDGAHIDTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRK---GISM 736 F + + I I + ++ G+ + D RK G ++ Sbjct: 514 LTFFYRFMPELITHGHIYIATPPLYKVVPKKGEGEYLYD-----DKALEKYRKHHTGFTL 568 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEM+ QLWETTLNP+TR L +V+I DA A D+ S LMG EV PRR FI ++ Sbjct: 569 QRYKGLGEMDPKQLWETTLNPETRILKQVEIEDAKMASDVTSMLMGSEVAPRRNFIYTHA 628 Query: 797 LPSALDI 803 + LDI Sbjct: 629 TDAELDI 635 >gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33] gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84] gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7] gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407] gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33] gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis] gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84] gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407] gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7] gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14] Length = 650 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 281/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ I++ YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + + G +Y + G + L V G + +GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++ L R++EL+FLN + +S+ DKR + Y+GGI ++V Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ +K + ++PI +G D+I++++AM++ YHENV+ F NNI +GGTH G R+ Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D + +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D K+ELF+VEGDSAGGSAK GR RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YGI G ++ + + + E SK I + +DD Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%) Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L D + S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 LMGD+VEPRREFI+EN++ S LD+ Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650 >gi|218296312|ref|ZP_03497068.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23] gi|218243384|gb|EED09914.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23] Length = 641 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 271/590 (45%), Positives = 365/590 (61%), Gaps = 8/590 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SYDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I Sbjct: 4 TEGVSYDASAIKVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 T TLN DGS TV DNGRGIP DL EEG A EVI T LH+GGKF +YKVSGGLHGVG Sbjct: 63 TTTLNPDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFESGAYKVSGGLHGVG 122 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183 SVVNALS W + + R+G + ++F G + PL V G TGT VTF P IF Sbjct: 123 ASVVNALSEWTVVEVFRDGKHHRIAFSRGEVTEPLQVVGPTPKGKTGTRVTFKPDPQIFG 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ ++ RL+E+SFL + +++ D RE KGG+ +F L ++ L Sbjct: 183 NLTFDPSKIRARLKEVSFLVAGLRLVFKDLIHG--REEVFQDKGGVASFAKALAEGEELL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + P I+G + +++ GY +L + N IP +DGGTHL+ ++A +R + Y Sbjct: 241 YEKPFLIRGQEGEVEVEVGFIHTKGYTTEILTYANMIPTRDGGTHLTAFKAAYSRALNQY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K+ +K+ GDD EG +V+S+K+P P+F QTK KL++ E + V V + Sbjct: 301 AKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPQPQFEGQTKGKLLNPEAGTAVGQVVYEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L LEE+P AK + +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P+ Sbjct: 361 LLEILEENPRIAKTVYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPE 420 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 ++ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ ++ A+G Sbjct: 421 EAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVAAIGA 480 Query: 484 GI----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G+ + FD+ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +P Sbjct: 481 GLSGTGEEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + GK ++Y+ +E L L G ++ L Sbjct: 541 PLYRLQVGKKVEYLYSDEELAQRLKELEGKSYEVQRFKGLGEMNPEQLWE 590 Score = 164 bits (416), Expect = 5e-38, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 71/155 (45%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + ++ V + F + I + + L Sbjct: 487 EEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRLQ 546 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 + L + + K +QR+KGLGEMN QLWETT+NP+ R L RV++ Sbjct: 547 VGKKVEYLYSDEELAQRLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKRVELQ 606 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA +A +LF +LMG EV PRREFI+E++ + +D+ Sbjct: 607 DALEASELFEKLMGQEVAPRREFIEEHARYAQIDV 641 >gi|118470567|ref|YP_884428.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] gi|152032506|sp|A0QNE0|GYRB_MYCS2 RecName: Full=DNA gyrase subunit B gi|152032507|sp|P0C559|GYRB_MYCSM RecName: Full=DNA gyrase subunit B gi|118171854|gb|ABK72750.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155] Length = 675 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 274/678 (40%), Positives = 386/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ N Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V ++ DGS V D+GRGIP ++H G+ +V+MT+LHAGGKF+ ++Y VSG Sbjct: 60 GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L+ + R+G + + + L G +TGT + F Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF D+N++T+ RL+E++FLN + I L D+R Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ +V +++R K P+ QS I G +++AM+WN G Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W E +P EAK +V K + ++ Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ ++ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + +S ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|258650278|ref|YP_003199434.1| DNA gyrasesubunit B [Nakamurella multipartita DSM 44233] gi|258553503|gb|ACV76445.1| DNA gyrase, B subunit [Nakamurella multipartita DSM 44233] Length = 670 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 269/633 (42%), Positives = 379/633 (59%), Gaps = 35/633 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + + Y A SI +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GY Sbjct: 1 MT--TKKNEYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + V L DG TV DNGRGIP ++H +E EV++T LHAGGKF+ SY VSGGL Sbjct: 58 ADRVEVILRADGGVTVIDNGRGIPVEMHPKEKKPTVEVVLTVLHAGGKFDSDSYAVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L + I R+G+ Y S+ PL G + TG+ VTF P + Sbjct: 118 HGVGVSVVNALSTRLDVEIHRDGHAYRQSYRYAKP-GPLETIGPSS-RTGSSVTFWPDGE 175 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214 IF +F +T+ RL+E++FLN + I+L D+R Sbjct: 176 IFETVEFKLETISRRLQEMAFLNKGLTITLRDERRTDVELEEIAESGANAVPVEAEPTTP 235 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + +P E T Y GG+ ++ +L+ K P+ S + + + + +++AM+WN Y+E+ Sbjct: 236 AKAWKPLERTFHYPGGLVDYIKHLNHTKDPIHPSIVGFESKGETMEVEVAMQWNSSYNES 295 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RS+LT + Y K+ + G+D REG +++SI Sbjct: 296 VHSFANTINTHEGGTHEEGFRSSLTSVVNKYATDKKLLKEKDDKLSGEDVREGLAAIISI 355 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 ++ +P+F QTK KL ++E +S V+ N+ ++ W E +P EAK I+ K + ++ R AA Sbjct: 356 RLREPQFEGQTKGKLGNTEAKSFVQKACNEWIADWFERNPSEAKTIISKAVSSAQARAAA 415 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+ARDL RRKG L+I LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILP Sbjct: 416 RKARDLVRRKGALEIGGLPGKLADCRSTDPSKSELYIVEGDSAGGSAKSGRDSMFQAILP 475 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 +RGKI+NVE+AR D++L + E+ +LITALGTGI D FD+ KLRYHKI++M DADVDG H Sbjct: 476 IRGKIINVEKARIDRVLRNTEVQSLITALGTGI-HDDFDLAKLRYHKIVLMADADVDGQH 534 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEE 571 IRTLLLT FR M L+ G +Y+ +PPLY I K + ++ + + + + Sbjct: 535 IRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWSKGAHEFAYSDRERDGLIAEGERAGR 594 Query: 572 IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 + + N + Sbjct: 595 RMIKDEGVQRYKGLGEMNAKELWETTMDPANRL 627 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 12/89 (13%) Query: 724 DTIFSIGRK---------GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 D + + G + G +QRYKGLGEMNA +LWETT++P R LL+V + DA+ AD Sbjct: 583 DGLIAEGERAGRRMIKDEG--VQRYKGLGEMNAKELWETTMDPANRLLLQVTLEDAATAD 640 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA-LD 802 +LFS LMG++VE RR FI N+ LD Sbjct: 641 ELFSVLMGEDVEARRAFITRNAKDVRFLD 669 >gi|188588443|ref|YP_001919471.1| DNA gyrase subunit B [Clostridium botulinum E3 str. Alaska E43] gi|251778873|ref|ZP_04821793.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498724|gb|ACD51860.1| DNA gyrase, B subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083188|gb|EES49078.1| DNA gyrase, B subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 635 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 298/641 (46%), Positives = 423/641 (65%), Gaps = 9/641 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 2 EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGYCKN 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V +N D S T SD+GRG+P +H + SA EVIMT LHAGGKF YKVSGGLHGV Sbjct: 61 IKVKINKDNSITSSDDGRGMPVGMHPKMHKSAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS + +KREG+I++ + G + L G ++GT + F P ++IF Sbjct: 121 GASVVNALSEQCIVTVKREGHIWQQEYSKGKVLYDLKQIGDTE-ESGTTIYFKPDAEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +F++DTL RLREL+FLN + I+LID R + RE +Y+GGI++FV+YL+R+K PL Sbjct: 180 EVEFDFDTLSQRLRELAFLNKGINITLIDCR--DDREENYYYEGGIKSFVAYLNRNKTPL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D ++++L +++NDGY EN+ F NNI +GGTHL G ++ALTR Y Sbjct: 238 HPEPIYVEGIKDKVTVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++ K++ ++ GDD REG T+V+S+K+ DP+F QTK KL +SEV+ +V+S V++ Sbjct: 298 AKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEY 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +LEE+P +KII+ K L A+ R+AAR+AR+LT RK VL+ +LPGKLADCS +DP+ Sbjct: 358 IGIFLEENPGTSKIIIDKALMAARAREAARKARELT-RKSVLERTTLPGKLADCSSKDPR 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L+S+ I +++TA G Sbjct: 417 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGG 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPL+ Sbjct: 477 GIGKD-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFR 535 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK Y + L+ L + + KG+ N + + +D + Sbjct: 536 VGKGKKETYAYSDAELDQVLQDMGGKDNSVDIQRYKGLGEMNATQLW---DTTMDPSKRI 592 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + I + E + + N +N Sbjct: 593 LLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNAKNVVNL 633 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI--CNGDKIKITGPCSLLDTIFSIGRK--GISM 736 + +F +Y R + + L + +G K + + Sbjct: 508 LLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKETYAYSDAELDQVLQDMGGKDNSVDI 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA+QLW+TT++P R LL+ +I DA AD++F+ LMG++VEPRREFI++N+ Sbjct: 568 QRYKGLGEMNATQLWDTTMDPSKRILLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNA 627 Query: 797 LP-SALDI 803 LDI Sbjct: 628 KNVVNLDI 635 >gi|260579565|ref|ZP_05847436.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734] gi|258602336|gb|EEW15642.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734] Length = 674 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 271/653 (41%), Positives = 388/653 (59%), Gaps = 38/653 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + S Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY Sbjct: 1 MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ++VTL DG V D+GRGIP + H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 60 AKEVSVTLLADGGVEVIDDGRGIPVEDHP-TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G ++ +F + L A TGT+ F P + Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVP-EELQQVKKA-RGTGTKQRFWPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222 IF +FN+DT+ RL+E++FLN + I L+D+R + Sbjct: 177 IFETVEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEKA 236 Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 Y G++ +V+Y++R + + + I + ++ +++A++WN G+ Sbjct: 237 AEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDHEVEVALQWNSGF 296 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 ++V F N I +GGTH G R+ALT + Y K + GDD REG +V Sbjct: 297 SQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREGLAAV 356 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+++ DP+F QTK KL ++E++ V+ VN+ L+ WL+ +P EAK IV K + ++ R Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVASAHAR 416 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 DAAR+ARD+ RRK DI LPGKLADC RDPK SEL++VEGDSAGGSAK GR QA Sbjct: 417 DAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDSMYQA 476 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDI KLRYHKI++M DADVD Sbjct: 477 ILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKIVLMADADVD 535 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G HI TLLLT FR M L+ G++Y+ +PPLY + K + D + + L+ Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEEGLA 595 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + ++ D I + ++ + + + +E A + Sbjct: 596 QGRKINKDDG--IQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEI 646 Score = 149 bits (377), Expect = 2e-33, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMNA +LWETT++P R+L RV + DA+ AD++FS Sbjct: 590 LEEGLAQGRK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEIFS 648 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI +N+ LD+ Sbjct: 649 VLMGDDVVARRSFITKNARDVRFLDV 674 >gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591] gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3] gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591] gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3] Length = 650 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 281/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ I++ YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + + G +Y + G + L V G + +GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++ L R++EL+FLN + +S+ DKR + Y+GGI ++V Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ +K + ++PI +G D+I++++AM++ YHENV+ F NNI +GGTH G R+ Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D + +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D K+ELF+VEGDSAGGSAK GR RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDATKTELFIVEGDSAGGSAKSGRDREFQAILPIRGKILNVEKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YGI G ++ + + + E SK I + +DD Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%) Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L D + S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 LMGD+VEPRREFI+EN++ S LD+ Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650 >gi|313890482|ref|ZP_07824110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120999|gb|EFR44110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 650 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 281/613 (45%), Positives = 400/613 (65%), Gaps = 6/613 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A I V Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFASHIEVI 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGVG SV Sbjct: 72 IEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALS+ L +R+ + G I+ F G++ + L + G TGT V F P +IF+ Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFKRGVVVDDLTIIGETE-LTGTTVHFTPDPEIFTETVI 190 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 FN+D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V YL+ K ++++ Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRKGMQQEKDFHYEGGIGSYVEYLNEKKDVIIET 250 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI G D I++++AM++ GYHENV+ F NNI +GGTH G R+ALTR I Y +K Sbjct: 251 PIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKK 310 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 311 NKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFHR 370 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D ++E Sbjct: 371 FLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNE 430 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G Sbjct: 431 LFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFG 490 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ Sbjct: 491 AD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 G ++ ++ + +L E SK + + +DD + + Sbjct: 550 GNEIKEYIQPGVNQEIQLQDAL--EKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENR 607 Query: 607 NHDKTFIEQAVIS 619 K ++ A + Sbjct: 608 LMAKVTVDDAAEA 620 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 6/107 (5%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLN 756 + I I G +I L D + GR S+QRYKGLGEM+ QLWETT++ Sbjct: 548 KVGNEIKEYIQPGVNQEI----QLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMD 603 Query: 757 PDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 P+ R + +V + DA++AD +F LMGD VEPRREFI+EN++ S LDI Sbjct: 604 PENRLMAKVTVDDAAEADRVFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052] gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052] Length = 635 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 302/643 (46%), Positives = 423/643 (65%), Gaps = 13/643 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY + Sbjct: 2 EQNNRKYDENQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSIDEALAGYCNK 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V +N D S TV+D+GRG+P +H + G S EVIMT LHAGGKF YKVSGGLHGV Sbjct: 61 IEVYINEDNSITVNDDGRGMPVGIHPKMGKSTVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS + + R+G+I++ + G + N L G + + TGT+ F P ++IF Sbjct: 121 GASVVNALSEECTVTVNRDGHIWQQKYSKGKVLNELTKVGDS-DQTGTQTYFKPDAEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+++ L RLREL+FLN + I L+DKR + Y+GGI++FVSYL+R+K PL Sbjct: 180 EIVFDFEILSQRLRELAFLNKGIYIRLVDKRDEKE--EVFHYEGGIKSFVSYLNRNKVPL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + PI I+G +DNIS+++A+++NDGY EN+ F NNI +GGTHL G ++ALTR Y Sbjct: 238 HEEPIYIEGVKDNISVEVALQYNDGYTENIFSFANNIDTVEGGTHLVGFKTALTRVFNDY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K K++ ++ GDD REG T V+SIK+ +P+F QTK KL +SEVR +V+S V + Sbjct: 298 AKKFGHIKENDKNFTGDDIREGLTGVISIKIEEPQFEGQTKTKLGNSEVRGIVDSIVGEN 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +LEE+P K+IV K L A+ RDAAR+AR+LT RK VL+ ++LPGKLADCS +DP+ Sbjct: 358 IGIFLEENPNIGKMIVDKALMAARARDAARKARELT-RKSVLERSTLPGKLADCSSKDPR 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR+R+ QAILPLRGKILNVE+ R D++L++ I ++ITA G Sbjct: 417 ECEIYIVEGDSAGGSAKQGRNRKFQAILPLRGKILNVEKQRLDRILNADTIRSMITAFGA 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FD+ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M +LI +G +YI +PPLY Sbjct: 477 GIGND-FDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRNLIDDGHVYIAQPPLYK 535 Query: 544 ITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 +++ K Y + LE L + G ++ + L + +D Sbjct: 536 VSKSKKEYYAYSDPELESVLSELGGKDNSTDIQRYKGLGEMNASQLWDT-----TMDPEK 590 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + + I + E + + N +N Sbjct: 591 RILLKVNIEDAMAADEIFTILMGEKVEPRKEFIQQNARNVVNL 633 Score = 169 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + A + + + + + ++ V + Sbjct: 450 ILNVEKQRLDRILNADTIRSMITAFGAGIGNDFDVEKIRYNRIIIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQR 738 F + I + + + + + L + +G K S +QR Sbjct: 510 LTFFYRYMRNLIDDGHVYIAQPPLYKVSKSKKEYYAYSDPELESVLSELGGKDNSTDIQR 569 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNASQLW+TT++P+ R LL+V I DA AD++F+ LMG++VEPR+EFIQ+N+ Sbjct: 570 YKGLGEMNASQLWDTTMDPEKRILLKVNIEDAMAADEIFTILMGEKVEPRKEFIQQNARN 629 Query: 799 -SALDI 803 LDI Sbjct: 630 VVNLDI 635 >gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909] gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1] gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909] gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1] Length = 639 Score = 574 bits (1480), Expect = e-161, Method: Composition-based stats. Identities = 293/646 (45%), Positives = 411/646 (63%), Gaps = 11/646 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA +IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MTQETTTQQYDASNIQVLEGLEAVRKRPGMYIGSTS-GRGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V + + V DNGRGIP D+HK+ G S E + T LHAGGKF YKVSGGL Sbjct: 60 CTEINVAITENNEIIVKDNGRGIPVDVHKQTGKSTVETVYTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS +L++ + R G Y SF G N L V G + + TGTEV F P + Sbjct: 120 HGVGASVVNALSEYLEVTVSRNGKKYFQSFEKGTPMNELHVIGES-DTTGTEVKFKPDPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ ++YD L++R+REL+FLN ++I+L D RS +P+ ++GGI +VS+L+++ Sbjct: 179 IFTETTVYDYDILRNRIRELAFLNKGLKITLEDLRSEKPQRHEFHFEGGISEYVSFLNKN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + + I ++G RD IS+++AM++N G N+ F NNI +GGTH +G R+ALTR Sbjct: 239 KEVIHEDVIYVEGERDGISVEIAMQYNTGVAGNIYSFANNINTHEGGTHEAGFRAALTRI 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY +K+ K ++IG+D REG T+++S K PDP+F QTK KL +SEVR + ++ Sbjct: 299 INSYAKKAN-LLKGDDALIGEDIREGLTAIISAKHPDPQFEGQTKTKLGNSEVRRIADNV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++G +L E+P AK+I+ K L A+ R AA+RAR++ RRK L+ KLADC Sbjct: 358 FSEGFERFLMENPQAAKLILDKSLMAARARMAAKRAREMVRRKSPLESLGFKSKLADCQS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD SELF+VEGDSAGGSAKQGR + QAILPLRGK+LNVE+AR DK+ ++ EI ++I Sbjct: 418 RDANISELFIVEGDSAGGSAKQGRDNKFQAILPLRGKVLNVEKARIDKVYANNEIKSMIH 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG+G D FDI K RYHK++IMTDADVDGAHIRTLLLTFF+R M LI NG++YI +P Sbjct: 478 AIGTGVG-DEFDIEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRPLIENGYVYIAQP 536 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PL+ I++GK ++Y +E LE + S + G ++ L +D Sbjct: 537 PLFKISQGKRIEYAYSQEELEAVMETLSATPRPNVQRYKGLGEMNAEQLWET-----TMD 591 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ +E I + + + + + N Sbjct: 592 PEVRTLLQVTLDDAVEADEIFDMLMGDRVEPRREFIDANAKYVTNL 637 Score = 177 bits (449), Expect = 7e-42, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + V +++ + ++ I + +V V + Sbjct: 455 VLNVEKARIDKVYANNEIKSMIHAIGTGVGDEFDIEKARYHKVVIMTDADVDGAHIRTLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738 F + I + + L I G +I+ L+ + ++QR Sbjct: 515 LTFFYRYMRPLIENGYVY-IAQPPLFKISQGKRIEYAYSQEELEAVMETLSATPRPNVQR 573 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMNA QLWETT++P+ R+LL+V + DA +AD++F LMGD VEPRREFI N+ Sbjct: 574 YKGLGEMNAEQLWETTMDPEVRTLLQVTLDDAVEADEIFDMLMGDRVEPRREFIDANAKY 633 Query: 799 S-ALD 802 LD Sbjct: 634 VTNLD 638 >gi|261749362|ref|YP_003257047.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497454|gb|ACX83904.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 642 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 272/633 (42%), Positives = 404/633 (63%), Gaps = 19/633 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N+ Y ADSIQ L+G++ ++ RPSMYIGD G GLHH++ EV+DN++DESL GY Sbjct: 1 MSNK--NTDYTADSIQSLEGIEHIRLRPSMYIGDV-GIRGLHHLVCEVIDNSVDESLAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ +G TV DNGRGIP D+HK+EG SA EV+MT++ AGGKF++ SYKVSGGL Sbjct: 58 CNKIWVTIHKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+S VNALS L + + R G IY+ ++ G + + G + GT++ +L + Sbjct: 118 HGVGISCVNALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGET-HLQGTKIHYLADNS 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF+ ++Y+ L RL+EL+FLN + + L D+R+ E F K G++ ++S LD+++ Sbjct: 177 IFNSITYHYEILSTRLKELAFLNKGLHLFLKDERN--NIEEDFFSKNGLKEYLSILDKNQ 234 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L+++ I I+G +++ +++AM++N + E + + NNI +GGTH+SG R ALTR Sbjct: 235 ESLIRNIIFIEGEKEDTIVEVAMQYNTSFKEKIYSYVNNINTSEGGTHISGFRRALTRTF 294 Query: 301 TSYVE---KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 Y + + +KKDK + GDD REG T+++SI++ +P+F QTK KL + EV +V+ Sbjct: 295 KKYTDGLLSNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V + L+++LEE+P E + I+ KV+ ++ R AA++AR+L ++K + + LPGKLADC Sbjct: 355 KIVGEMLNSYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +P+ E++LVEGDSAGG+AKQGR R QAILPLRGKILNVE+A K+ ++EI + Sbjct: 415 SFNNPENCEIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNI 474 Query: 478 ITALGTGIGQDSF----DINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 T+LG IG + ++ KLRY+KIIIMTDAD+DG+HI TL+LT FFR M LI G Sbjct: 475 FTSLGVSIGTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGH 534 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFID 592 +YI PPLY I +G QY +E E L ++I G ++ L Sbjct: 535 IYIATPPLYLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWET-- 592 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 ++ + H + E I + E Sbjct: 593 ---TMNPKKRTLRKVHIENLSEADKIFSILMGE 622 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 2/103 (1%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFS-IGR-KGISMQRYKGLGEMNASQLWETTLNPDTR 760 L LI G+ + + I +GR K I++QRYKGLGEMNA QLWETT+NP R Sbjct: 540 PPLYLIRKGNHSQYAWSDEEREKILQRLGRRKKINIQRYKGLGEMNAEQLWETTMNPKKR 599 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +L +V I + S+AD +FS LMG+EV PRR FI++N++ + +D+ Sbjct: 600 TLRKVHIENLSEADKIFSILMGEEVPPRRSFIEKNAIHAKIDV 642 >gi|240047186|ref|YP_002960574.1| DNA gyrase subunit B [Mycoplasma conjunctivae HRC/581] gi|239984758|emb|CAT04732.1| DNA gyrase subunit B [Mycoplasma conjunctivae] Length = 640 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 253/592 (42%), Positives = 374/592 (63%), Gaps = 11/592 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A SIQ L+GL+ V+KRP MYIG T G LHH+I+E++DNA+DE+L G+A+ I Sbjct: 1 MSQKNYSASSIQTLEGLEPVRKRPGMYIGGT-GIQPLHHLIWEIVDNAVDEALAGFANQI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + DG VSDNGRGIPTD+H + G+SAAEV++T LHAGGKF+ SYKVSGGLHGVG Sbjct: 60 DVVITKDGYVQVSDNGRGIPTDIHPKHGVSAAEVVLTILHAGGKFDGSSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182 SVVNALS L++ IKR+G +Y F + G + L V S + N TGT + F+P I Sbjct: 120 ASVVNALSKHLQVWIKRDGKLYFQEFRDGGQKVDNLKVIDSVSENQTGTTIKFIPDFTIM 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F D +Q RL++ ++L ++ + T ++GGI ++S L + + Sbjct: 180 DKNEFRLDIIQDRLKQTAYLTKGLK--FTIDDQRTNFQKTFLFEGGIFDYISELSKGYEH 237 Query: 243 LMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + I ++ ++I +++A+R+ + +L +TNNI ++GGTH +GL AL+R Sbjct: 238 VHDEIIYVEDELSHNENHIKVEVALRYVNEDRSELLSYTNNIYNREGGTHEAGLFDALSR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y ++ K + +D ++G +V+SIK DP F QTK KL S EVR + Sbjct: 298 ILNNYAFENKFFKNENEKFSKEDIKDGLFAVISIKHSDPIFEGQTKGKLNSKEVRQITNK 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P +A+ I+++ L + R AA AR+ +RK D++SLPGKLADCS Sbjct: 358 VFSEVFERFLVENPEQARKIIERNLISQKARKAAESAREAVKRKSPFDVSSLPGKLADCS 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ + +EL++VEG+SAGGSAK GR R QAILPLRGK++N +R +K+L ++EI +LI Sbjct: 418 VKNAQMAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRTNLEKVLKNEEILSLI 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG F+INK+RYHKIIIMTDAD DG+HIRTLLLTF +R LI G +YI + Sbjct: 478 TAFGTGIG-PEFNINKVRYHKIIIMTDADSDGSHIRTLLLTFLYRYFRPLIEYGLIYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PPLY I+ K + Y ++ ++ + + + ++ G ++ + L Sbjct: 537 PPLYKISANKKVVYAYSDKQKDEIIAKEFENNKVTIQRYKGLGEMNPDQLWE 588 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEMN QLWETT++P TR + +V+I DA A +F LMG+EV+PR+ FI+ Sbjct: 570 VTIQRYKGLGEMNPDQLWETTMDPTTRKMYQVQIHDAFIASQVFEALMGEEVQPRKVFIE 629 Query: 794 ENSLPS-ALDI 803 EN+ LD+ Sbjct: 630 ENARYVKNLDV 640 >gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14] gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14] Length = 639 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 300/640 (46%), Positives = 416/640 (65%), Gaps = 5/640 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ G+ L G + TGT + F + Sbjct: 120 HGVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ +NY+TLQ R+REL+FLN +QI+L D+R E RE + Y+GGI+++V L+ + Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEGREDSYHYEGGIKSYVELLNEN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+PL + PI I ++D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 239 KEPLHEEPIYIHQTKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRI 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY +S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 299 LNSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + +L EHP +IIV+K + AS R AA++AR++TRRK LD++SLPGKLADCS Sbjct: 359 FAEYFERFLFEHPAVGRIIVEKGVMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 419 KNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 479 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598 PLY +T+GK YV ++ L+ + + G ++ + L + Sbjct: 538 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRS 597 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L D + ++ V + ++ + L Sbjct: 598 MLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 637 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 461 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 520 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739 R IE Y+ I L K + LD + + + S+ RY Sbjct: 521 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 575 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETT+NP+ RS+L+V++ DA AD F LMGD VE RR+FI++N++ + Sbjct: 576 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 635 Query: 800 ALD 802 LD Sbjct: 636 NLD 638 >gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925] gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925] Length = 635 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 297/635 (46%), Positives = 424/635 (66%), Gaps = 5/635 (0%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L G+ I Sbjct: 3 NKQVYDESQIQVLEGLEAVRKRPGMYIGST-GIRGLHHLVYEIVDNSIDEALAGFCQNIK 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ + S TV D+GRG+P +H + EVIMT LHAGGKF YKVSGGLHGVG Sbjct: 62 VYIHKNNSVTVKDDGRGMPVGIHPKMKRPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS + K+ ++REG+++ + G + + L V G + + GT V F P +IF Sbjct: 122 SVVNALSKYCKVEVRREGHVWMQEYKKGKVASELEVIGDSE-ERGTLVYFEPDDEIFEEV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+YDTL HRLREL+FLN +I L+D+R + + Y+GGI++FVSYL+R+K+ L + Sbjct: 181 EFDYDTLSHRLRELAFLNKGTRIILVDEREEKEQ--EFHYEGGIKSFVSYLNRNKQTLHE 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++G++D+ +++A+++ND Y++N+ F NNI +GGTHL+G +SALTR + Y Sbjct: 239 EPIYVEGNKDDYLVEVALQYNDTYNDNIFAFANNIDTIEGGTHLAGFKSALTRVLNDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K+ +++ GDD REG T+V+S+K+ DP+F QTK KL +SEVR +V+S V++ +S Sbjct: 299 RYGYLKETDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNSEVRGIVDSIVSERVS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P AK +++K L A+ R+AA++AR+LTRRK VL+ +LPGKLADCS +DP + Sbjct: 359 EFLEENPDTAKTVIEKSLTAARAREAAKKARELTRRKSVLESTALPGKLADCSSKDPSEC 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAKQGR R QAILPLRGKI+NVE+ R DK+L+S++I +ITA G GI Sbjct: 419 EIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIRAMITAFGAGI 478 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M L+ G +YI +PPLY + Sbjct: 479 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVEGGHVYIAQPPLYQVK 537 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 RGK ++Y + L+ L ++ KG+ + + + + + Sbjct: 538 RGKVIRYSYSDNELKQVLTELGGKDKNTEIQRYKGLGEMDATQLWDTTMNPEHRTLVKVT 597 Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + E I E +E A K+ N Sbjct: 598 IDDAMRADEVFTILMGDKVEPRREFIEENAKKVVN 632 Score = 169 bits (429), Expect = 2e-39, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 16/239 (6%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + + + I + D + + +E+ + + N E + Sbjct: 409 DCSSKDPSECEIYIVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSEQIR 468 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 + + + + + + + ++ V + F + Sbjct: 469 AMITAFGAGIGKDFDIEKIRYHR-----------IIIMTDADVDGAHIATLLLTFFYRYM 517 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGISMQRYKGLGEM 745 + + + L + G I+ + + L + + G+ K +QRYKGLGEM Sbjct: 518 RELVEGGHVY-IAQPPLYQVKRGKVIRYSYSDNELKQVLTELGGKDKNTEIQRYKGLGEM 576 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 +A+QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 577 DATQLWDTTMNPEHRTLVKVTIDDAMRADEVFTILMGDKVEPRREFIEENAKKVVNLDI 635 >gi|78707365|gb|ABB46488.1| DNA gyrase subunit B [Acholeplasma pleciae] Length = 587 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 278/580 (47%), Positives = 381/580 (65%), Gaps = 6/580 (1%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 VKKRP MYIG T GE GLHH+++E++DN+IDE+L GYAD IT+ + V+DNGRGI Sbjct: 1 VKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D H + G A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W + I ++G Sbjct: 60 PVDTHPKTGRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDG 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFL 202 IYE + GI L G + +GT ++F IF +NY+TL+ R+++L+FL Sbjct: 120 VIYEQKYERGIPAYDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N ++++LID R E + + Y+GGI +V +L++ K + I I+ +D+I+I+LA Sbjct: 179 NKGLKLNLIDDRFEEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDITIELA 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 +++ D Y N+ FTNNI +GG H G + ALTR I+ Y ++ S+ G+D Sbjct: 239 LQFVDSYSPNLHSFTNNISTTEGGMHEDGFKMALTRVISKYADELKMK--KDDSISGEDT 296 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T+++S+K P+P+F QTK KL + EVR++ ++ L +L E+P +AK IV+KV Sbjct: 297 REGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAKAIVEKV 356 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 L A+ R AAR+A+DLTRRK LD KLADC +DP+KSE+++VEGDSAGGSAKQG Sbjct: 357 LLATRARVAARKAKDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQG 416 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTGI D FDI K RYHKI+I Sbjct: 417 RDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKARYHKIVI 475 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY ++ G++ +Y E+ L Sbjct: 476 MTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQELNII 535 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 L I+ + + ++ +D A + IK Sbjct: 536 LKKIETKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIK 575 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707 G + DI R + V ++G+ I + + R I+ Y+ L Sbjct: 457 TGISDEFDITKARYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 516 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + G + L+ I ++QRYKGLGEM+A QLW+TT++P R+LL++K+ Sbjct: 517 VSWGRNSEYAYTEQELNIILKKIETKPNIQRYKGLGEMDAEQLWDTTMDPAKRTLLQIKL 576 Query: 768 TDASQADDLFS 778 DA AD +FS Sbjct: 577 EDAIDADQVFS 587 >gi|297530088|ref|YP_003671363.1| DNA topoisomerase IV subunit beta [Geobacillus sp. C56-T3] gi|297253340|gb|ADI26786.1| DNA topoisomerase IV, B subunit [Geobacillus sp. C56-T3] Length = 645 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 262/601 (43%), Positives = 378/601 (62%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKR-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV D GRG+P +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GNYILVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IY F + G L G N TGT + F P Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+TL RLRE +FL ++I L+D+R+ Y+ GIEAFV+YL+ Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I ++ A +++DGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K+ +++ G D REG ++V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L+E+P + +++KK + A R+AAR+AR+ + +K A L GKL Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY I+ + + ++Y +E L++ I+ + + + + Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQRYKGLGEMNADQLWETTM 592 Query: 592 D 592 + Sbjct: 593 N 593 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737 F + I + ++ + + K +I + + I +K G ++Q Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQ 574 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ + Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632 >gi|68535067|ref|YP_249772.1| DNA gyrase subunit B [Corynebacterium jeikeium K411] gi|68262666|emb|CAI36154.1| DNA gyrase subunit B [Corynebacterium jeikeium K411] Length = 674 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 271/653 (41%), Positives = 388/653 (59%), Gaps = 38/653 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + S Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GY Sbjct: 1 MAEPQKQSDYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ++VTL DG V D+GRGIP + H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 60 AKEVSVTLLADGGVEVIDDGRGIPVEDHP-TGPPTVQVVMTQLHAGGKFDSDSYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G ++ +F + L A TGT+ F P + Sbjct: 119 HGVGISVVNALSTRMETEIKRDGYLWRQNFNEAVP-EELQQVKKA-RGTGTKQRFWPDPE 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222 IF +FN+DT+ RL+E++FLN + I L+D+R + Sbjct: 177 IFETVEFNFDTVAKRLQEMAFLNKGLTIKLVDERENLEDDEELEAAAEDAAAPKSTEEKA 236 Query: 223 -------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 Y G++ +V+Y++R + + + I + ++ +++A++WN G+ Sbjct: 237 AEAEKKKGPRTRVFHYPEGLKDYVAYINRKRTAIHPTIISFDVAEEDHEVEVALQWNSGF 296 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 ++V F N I +GGTH G R+ALT + Y K + GDD REG +V Sbjct: 297 SQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYARDHKLLKAKDPKLSGDDVREGLAAV 356 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+++ DP+F QTK KL ++E++ V+ VN+ L+ WL+ +P EAK IV K + ++ R Sbjct: 357 ISVRVGDPQFEGQTKTKLGNTEIKGFVQRAVNEHLADWLDANPAEAKAIVDKAVASAHAR 416 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 DAAR+ARD+ RRK DI LPGKLADC RDPK SEL++VEGDSAGGSAK GR QA Sbjct: 417 DAARKARDMVRRKSASDIGGLPGKLADCRSRDPKLSELYIVEGDSAGGSAKSGRDSMYQA 476 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDI KLRYHKI++M DADVD Sbjct: 477 ILPLRGKILNVEKARMDKVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKIVLMADADVD 535 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G HI TLLLT FR M L+ G++Y+ +PPLY + K + D + + L+ Sbjct: 536 GQHIATLLLTLLFRFMRPLVEEGYVYLAQPPLYKLKWAKGEPGFAFSDRERDEQLEEGLA 595 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + ++ D I + ++ + + + +E A + Sbjct: 596 KGRKINKDDG--IQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEI 646 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMNA +LWETT++P R+L RV + DA+ AD++FS Sbjct: 590 LEEGLAKGRK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRTLRRVDLEDAAAADEIFS 648 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI +N+ LD+ Sbjct: 649 VLMGDDVVARRSFITKNARDVRFLDV 674 >gi|297558991|ref|YP_003677965.1| DNA gyrase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843439|gb|ADH65459.1| DNA gyrase, B subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 645 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 271/545 (49%), Positives = 370/545 (67%), Gaps = 7/545 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I VTL Sbjct: 2 AYDAGSITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADAIEVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V+DNGRGIPTDLH E A EV++T LHAGGKF+ KSY VSGGLHGVGVSVV Sbjct: 61 LADGGVCVADNGRGIPTDLHPVEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ L++ I+ G+++ + L V G + ++TGT++TF P DIF F+ Sbjct: 121 NALSTALEVEIRLHGHVWRQRYEMTAPTGEL-VKGESTDETGTQITFWPDGDIFETTTFS 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLM 244 ++TL R++E++FLN + I++ D+R P T Y G+ +V +++ K+P Sbjct: 180 FETLARRMQEMAFLNKGLSITIRDERPEHTDGGPTVNTFHYDEGLSDYVRHINAKKEPAH 239 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 S I + + IS+++AM+WN Y +V F N I +GGTH G RSALT + Y Sbjct: 240 ASIISFEEEGEGISVEIAMQWNQSYTSSVHTFANTINTAEGGTHEEGFRSALTTLVNRYA 299 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 ++ ++ GDD REG T+++S+K+ DP+F QTK KL ++E +S V+ N+ L Sbjct: 300 RDQKLLREKDDNLTGDDIREGLTAIISVKLADPQFEGQTKTKLGNTEAKSFVQKVTNEHL 359 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 W E +P EAK IV K A+ R AAR+ARDLTRRK +L+ SLPGKL+DC +P++ Sbjct: 360 RDWFERNPGEAKDIVSKASQAARARVAARQARDLTRRKTLLETTSLPGKLSDCQSTNPEE 419 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 E+++VEGDSAGGSAK GR+ NQAILP+RGKILNVE++R D++L + E+ +ITALGTG Sbjct: 420 CEVYIVEGDSAGGSAKGGRNPHNQAILPIRGKILNVEKSRIDRILKNAEVQAIITALGTG 479 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ FD KLRYHK+I+M DADVDG HIRTLLLT FR M L+ G +Y+ PPLY I Sbjct: 480 IHEE-FDAEKLRYHKVILMADADVDGQHIRTLLLTLLFRFMKPLVEAGNVYLAAPPLYKI 538 Query: 545 TRGKS 549 + Sbjct: 539 KWDQK 543 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+QAD+LFS LMG++VE RR FIQ N Sbjct: 577 VQRFKGLGEMNANELWDTTMDPDRRVLLQVSLEDAAQADELFSVLMGEDVESRRAFIQRN 636 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 637 AKDVRFLDI 645 >gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379] gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379] Length = 638 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 393/591 (66%), Gaps = 7/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N + Y+AD IQ+L+GL+AV+ RP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MVENKKTQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + ITV + V DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 CNTITVAIEEGNWIRVEDNGRGIPVDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L+ + R+G IY M F G + + V G + TGT + F + Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIYSMKFERGDVVQGITVIGDT-DRTGTTIRFKADPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + YD L+ R+REL+FLN + I L D+R + +E T Y+GG+ +V L+ + Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDERIGQEKEETFCYEGGLLEYVEMLNEN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L I + G D ++++M++N GY NVL + NNI +GGTH SG ++ALTR Sbjct: 239 KDALH-EAIYVHGEMDGKEVEISMQYNTGYSNNVLSYANNINTHEGGTHESGFKTALTRI 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY +K+ KDK S+ GDD REG +++SIK P+P+F QTK KL +SE+ ++ Sbjct: 298 INSYGKKNK-LIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +L E+P AKIIV+K L AS R AA++AR+ TRRK L+ +LPGKLADCS Sbjct: 357 FSEELDRFLLENPKTAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+L++ E+ +LIT Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG+ +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M LI G++YI +P Sbjct: 477 AIGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYVYIARP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLYG+ GK Y EE L+ + + ++ G ++ +L + Sbjct: 536 PLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRYKGLGEMNAEELWD 586 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V ++ + + I ++ + +V V + Sbjct: 454 ILNVEKVRIDKVLANDEVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739 F F + I + + + L + L I G K ++QRY Sbjct: 514 LTFFFRYMRELIDAGYVYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRY 573 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA +LW+TT++P+ R + +V + DA +AD F LMG++VEPRR+FI++N+L Sbjct: 574 KGLGEMNAEELWDTTMDPEHRLMYQVSVNDAQRADAAFDTLMGEKVEPRRKFIEDNALNV 633 Query: 800 -ALDI 803 LDI Sbjct: 634 INLDI 638 >gi|326789144|ref|YP_004306965.1| DNA gyrase subunit beta [Clostridium lentocellum DSM 5427] gi|326539908|gb|ADZ81767.1| DNA gyrase, B subunit [Clostridium lentocellum DSM 5427] Length = 634 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 287/583 (49%), Positives = 386/583 (66%), Gaps = 4/583 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD + IQIL+GL AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ I VT Sbjct: 3 ATYDENQIQILEGLQAVRKRPGMYIGSTSS-KGLHHLVYEIVDNAVDEALAGFCSFIKVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 ++ D + +V DNGRGIP +H ++GIS EV+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 62 IHADNTISVIDNGRGIPVGIHPQKGISTVEVVFTILHAGGKFGGGGYKVSGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS WL + + +G +++ F G + PL V G GT V F P ++IF F Sbjct: 122 VNALSEWLTVEVYTDGKVHQEKFSRGDVVQPLTVIGDTNKV-GTYVRFKPDTEIFEEVIF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +Y L+ RL+E +FL +++I L+D+R + + T Y+GGI+ FV +L++HK P+ Sbjct: 181 DYKVLEQRLKETAFLTKALKIQLVDEREGQEQNKTFHYEGGIKEFVQHLNKHKTPIYDEI 240 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 +G +D I++++A + ND Y EN+ F NNI +GGTHLSG R+A+T+ + Y K Sbjct: 241 FYCEGEKDGIAVEVAFQHNDSYVENLFSFVNNINTPEGGTHLSGFRTAITKNLNDYARKM 300 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K +++ GDD REG T+V+SIK+ DP+F QTK KL SSE V+S D L+ + Sbjct: 301 GLLKDSDKNLTGDDIREGMTAVISIKIGDPQFEGQTKTKLGSSEAAGAVQSVFGDQLTYF 360 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LE++P K+IV+K + A+ RDAAR+AR+LTRRK L+ +LPGKLADCSE+D K E+ Sbjct: 361 LEQNPNVGKVIVQKGVMAARARDAARKARELTRRKSALEGNALPGKLADCSEKDASKCEI 420 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 ++VEGDSAGGSAK RS + QAILPLRGKILNVE+ R DKML +QEI +ITA G GI Sbjct: 421 YIVEGDSAGGSAKSARSPKTQAILPLRGKILNVEKVRIDKMLENQEIRNMITAFGAGI-S 479 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 D FDI+KLRY KII+MTDADVDGAHIRTLLLTF +R LI +YI +PPLY + + Sbjct: 480 DDFDISKLRYGKIILMTDADVDGAHIRTLLLTFLYRYYRELIEQDHVYIAQPPLYLVEKN 539 Query: 548 KSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 K Y D++ LE L + G ++ L Sbjct: 540 KKKHYAFDDKELEKLLEEVGRTGITRMQRYKGLGEMNAEQLWE 582 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 4/127 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS-LLDTIFSI-GRKGIS-MQ 737 + +F +Y R + + +K K L+ + GR GI+ MQ Sbjct: 508 LLLTFLYRYYRELIEQDHVYIAQPPLYLVEKNKKKHYAFDDKELEKLLEEVGRTGITRMQ 567 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMNA QLWETT++P++R L++V I DA+ AD++F++LMGD+VEPRR+FI E++ Sbjct: 568 RYKGLGEMNAEQLWETTMDPESRVLVKVNIDDAAAADEIFTKLMGDDVEPRRQFINEHAH 627 Query: 798 PSA-LDI 803 LDI Sbjct: 628 KVTYLDI 634 >gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] Length = 729 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 264/597 (44%), Positives = 370/597 (61%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 81 ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEILDNAIDEAQAGFAS 139 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 + V L+ DGS +V DNGRGIPTDLH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 140 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 199 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G ++ ++ G L T + GT + F P Sbjct: 200 HGVGLSVVNALSEALEVTVWRDGMEHKQNYSRGKPITTLTCRVLTLESERTKGTSIRFWP 259 Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234 ++F+ +F+++T+ R+REL+FLN V ISL + + + ++ GG+ +VS Sbjct: 260 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKNQYSEYYFAGGLTEYVS 319 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ K P+ + + ++D+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 320 WLNTDKNPIHDVLG-FRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 378 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR + + +KS K+ S+ G+ REG T ++S+K+P+P F QTK +L + EVR Sbjct: 379 ASLTRTLNALAKKSKTVKEKDISLSGEHVREGLTCIVSVKIPNPEFEGQTKTRLGNPEVR 438 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V+ V + L+ +LE HP + IV K L+A AA+RAR+L R K VL +SLPGK Sbjct: 439 KIVDQSVQEYLTEFLELHPDVLESIVSKSLNAYKAALAAKRARELVRSKSVLKSSSLPGK 498 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS DP+ SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++E Sbjct: 499 LADCSSTDPEASEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 558 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 559 IQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGC 618 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPL+ + RGK Y D+ L+ N + G + L Sbjct: 619 IYVGVPPLFKVERGKHAHYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWE 675 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 9/190 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E E + ++ N + + K E ++ I++ V + Sbjct: 542 ILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIIL-TDADVDGAHIRT 600 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISM 736 F F + + I + + L I S ++ Sbjct: 601 LLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKHAHYCYDDAD-LKKITSNFPANASYNI 659 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QR+KGLGEM QLWETT+NP+TR L ++ + D ++A+ FS LMG V+ R+E I+ + Sbjct: 660 QRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELIKNAA 719 Query: 797 LPSA---LDI 803 LDI Sbjct: 720 TRINLQRLDI 729 >gi|261419951|ref|YP_003253633.1| DNA topoisomerase IV subunit B [Geobacillus sp. Y412MC61] gi|319766765|ref|YP_004132266.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52] gi|261376408|gb|ACX79151.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC61] gi|317111631|gb|ADU94123.1| DNA topoisomerase IV, B subunit [Geobacillus sp. Y412MC52] Length = 645 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 267/656 (40%), Positives = 392/656 (59%), Gaps = 23/656 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKR-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV D GRG+P +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GNYILVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IY F + G L G N TGT + F P Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+TL RLRE +FL ++I L+D+R+ Y+ GIEAFV+YL+ Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I ++ A +++DGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K+ +++ G D REG ++V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARRVGLLKEKDKNLEGSDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L+E+P + +++KK + A R+AAR+AR+ + +K A L GKL Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY I+ + + ++Y +E L++ + I+ + G ++ + L Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQRY-KGLGEMNADQLWET- 590 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + + + + + +A L E Sbjct: 591 ----TMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEEPE 642 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737 F + I + ++ + + K +I L I +G ++Q Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEIMKKMGRGYTIQ 574 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ + Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632 >gi|56420286|ref|YP_147604.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426] gi|56380128|dbj|BAD76036.1| DNA topoisomerase IV subunit B [Geobacillus kaustophilus HTA426] Length = 645 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 262/601 (43%), Positives = 379/601 (63%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKH-ATYEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV D GRG+P +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GNYIFVQIHKDNSITVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IY F + G L G N TGT + F P Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+TL RLRE +FL ++I L+D+R+ Y+ GIEAFV+YL+ Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I ++ A +++DGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 235 KDVLHP-VVYFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K+ +++ G D REG ++V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGLSAVVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L+E+P + +++KK + A R+AAR+AR+ + +K A L GKL Sbjct: 354 AVVSEQLMYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIHAIGGGVGAD-FSLDDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY I+ + + ++Y +E L++ I+ + + + + Sbjct: 533 IALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQRYKGLGEMNADQLWETTM 592 Query: 592 D 592 + Sbjct: 593 N 593 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSLDDVNYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737 F + I + ++ + + K +I + + I +K G ++Q Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKKSGKNEIVEYAWTDEQLKEITKKMGRGYTIQ 574 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ + Sbjct: 575 RYKGLGEMNADQLWETTMNPQTRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632 >gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1] Length = 650 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 279/628 (44%), Positives = 403/628 (64%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M++ I++ YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEEIKDLQEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + D S TV DNGRGIP D+ ++ G A E + T LHAGGKF YK Sbjct: 60 ALAGFADKIEVYIEPDNSITVIDNGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + + G +Y + G + L V G + +GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVHVYKNGQVYFQEYKRGEVVADLEVVGET-DRSGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F++ L R++EL+FLN + +S+ DKR + Y+GGI ++V Sbjct: 179 TPDPEIFTETTEFDFAKLNKRIQELAFLNRGLNLSITDKREGVEQTKEYHYEGGIASYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ +K + ++PI +G D+I++++AM++ YHENV+ F NNI +GGTH G R+ Sbjct: 239 YLNENKDVIFETPIYTEGEMDDITVEVAMQYTTSYHENVVSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPGPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + +D + +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSDAFAEFLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D K+ELF+VEGDSAGGSAK GR R+ QAILP+RGKILNV++A DK+L+++EI Sbjct: 419 ADCSSNDAAKTELFIVEGDSAGGSAKSGRDRKFQAILPIRGKILNVKKASMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RY K++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YGI G ++ + + + E SK I + +DD Sbjct: 538 YIAQPPIYGIKVGSEIKEYI--QPGVNQEQELQDALERHSTGRSKPTIQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMNPENRLMARVSVDDAAEADKI 623 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%) Query: 721 SLLDTIF--SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L D + S GR ++QRYKGLGEM+ QLWETT+NP+ R + RV + DA++AD +F Sbjct: 566 ELQDALERHSTGRSKPTIQRYKGLGEMDDHQLWETTMNPENRLMARVSVDDAAEADKIFD 625 Query: 779 RLMGDEVEPRREFIQENSLPSALDI 803 LMGD+VEPRREFI+EN++ S LD+ Sbjct: 626 MLMGDKVEPRREFIEENAVYSTLDV 650 >gi|289433379|ref|YP_003463251.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 646 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS++L++ + REG Y F G + + G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IFS F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV + LEDYL + + G ++ L + Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKDTKYGIQRYKGLGEMNPEQLWD 594 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + S + L+ V + + + + I L Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547 Query: 708 ICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I +G +I+ + L D + S+ + +QRYKGLGEMN QLW+TT+NP+ R+LL+V Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDKDTKYGIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI+EN+ LD+ Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDV 646 >gi|283768639|ref|ZP_06341551.1| DNA gyrase, B subunit [Bulleidia extructa W1219] gi|283105031|gb|EFC06403.1| DNA gyrase, B subunit [Bulleidia extructa W1219] Length = 659 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 259/595 (43%), Positives = 391/595 (65%), Gaps = 8/595 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + +Y+ + IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN IDE++ GYA Sbjct: 20 DMKVDHAYEDEDIQVLEGLEAVRKRPGMYIGSTSSV-GLHHLVWEIVDNGIDEAMAGYAS 78 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +T++ D +V D+GRG+PT ++++ GIS E I T LHAGGKF +YKVSGGLHG Sbjct: 79 QVEITVDEDNIVSVEDDGRGMPTGMNEKTGISTIETIFTVLHAGGKFGGGAYKVSGGLHG 138 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 VG S VNALS +L++ + EG++Y + F N G PL V G+ + G+ V F Sbjct: 139 VGASAVNALSEFLEVTVYHEGSVYFVRFENGGHPVEPLKVIGTCDVDKHGSLVRFKADPT 198 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLD 237 IF+ ++++ L++R+R+L+FLN ++I + + E R+ F++GG++ +V +++ Sbjct: 199 IFTETTVYDFNILRNRIRQLAFLNKGIRIKFHDLREVNFEKRDHDYFFEGGLKEYVKFIN 258 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 +K + + I +G DNI +++A ++N Y+ ++ F NNI DGGTH G R ALT Sbjct: 259 ENKDKVHEDVIYSEGYEDNIQVEVACQYNTSYNPSIYTFCNNITTVDGGTHEEGFRMALT 318 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R + Y ++ K+ +V +DC+EG T+++S+K PDP++ SQTK KL +SEVR +V Sbjct: 319 RIVNKYARENNFLKEKDENVTQEDCKEGLTAIISVKHPDPQYISQTKSKLTNSEVRKIVS 378 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 +L E+P +AK I++K++ AS R AA+RA+++T RK + + SLPGKL+DC Sbjct: 379 DIFGTQFERFLMENPNQAKAIMEKIVIASQARLAAKRAKEIT-RKSSIKVGSLPGKLSDC 437 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +DP SE++LVEGDSAGGSAK GR QAILPLRGKILNVE+ R +K +QEI ++ Sbjct: 438 SSKDPSISEIYLVEGDSAGGSAKNGRDSHFQAILPLRGKILNVEKTRPEKAFENQEIRSM 497 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA G G+ QD D +KLRYHKI+IMTDADVDGAHIRTLLLTFF+R + ++ G++YI Sbjct: 498 ITAFGAGV-QDEVDTSKLRYHKIVIMTDADVDGAHIRTLLLTFFYRFLRPVLEQGYVYIA 556 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +PPL+ + +G+S++Y + LE+ I+ + + + +D Sbjct: 557 QPPLFKVQKGQSVRYAYTDRQLEELKAEMGERLSIQRYKGLGEMDASQLWETTMD 611 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 3/103 (2%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 L + G ++ L+ + + G + +S+QRYKGLGEM+ASQLWETT++P +R+ Sbjct: 558 PPLFKVQKGQSVRYAYTDRQLEELKAEMGER-LSIQRYKGLGEMDASQLWETTMDPKSRT 616 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L+RV I DA AD FS LMG+EVEPR+ FI EN+ LDI Sbjct: 617 LIRVTIEDAEYADQNFSMLMGEEVEPRKNFILENAHFVENLDI 659 >gi|260437693|ref|ZP_05791509.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] gi|292809919|gb|EFF69124.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876] Length = 638 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 288/587 (49%), Positives = 399/587 (67%), Gaps = 5/587 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G+ I Sbjct: 1 MSDAGYTADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNSVDEALAGFCTEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V +N D S TV DNGRGIP ++ + G+ EV+ T LHAGGKF YKVSGGLHGVG Sbjct: 60 FVQINEDNSITVIDNGRGIPVGINAKSGLPGVEVVFTILHAGGKFGGGGYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183 SVVNALS WL++++ + GNIYE + G + PL + GS TGTEV FLP +IF Sbjct: 120 ASVVNALSEWLEVKVFQNGNIYEQRYERGKVMYPLKIVGSCDMEKTGTEVHFLPDKEIFE 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++Y+ L+ RLRE++FL +++I+L D R + ++ Y+GGI+ +V YL++ + L Sbjct: 180 DTVYDYNVLKQRLREMAFLTKNLRITLKDDREDKKEKV-FHYEGGIKEYVEYLNKGNQAL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I +G+++ +++++A + NDGY +NV F NNI +GGTH++G R+A+T+ Y Sbjct: 239 YDEIIYCEGNKNGVNVEVAFQHNDGYSDNVYGFVNNITTPEGGTHVTGFRNAVTKTFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ S+ G+D REG T+++SIK+ DP+F QTK+KL +SE R VES V + Sbjct: 299 ARSNKILKEKDPSLSGEDIREGLTAIISIKIADPQFEGQTKQKLGNSEARGAVESVVTEQ 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ +LE++P AK I +K + A R+AAR+ARDLTRRK LD +LPGKLADCS+++ + Sbjct: 359 LTYFLEQNPSVAKTICEKSVLAQRAREAARKARDLTRRKTALDGFNLPGKLADCSDKNSE 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 E+F+VEGDSAGGSAK R RE QAILPLRGKILNVE+AR D++L + EI T+ITA GT Sbjct: 419 NCEIFIVEGDSAGGSAKSARKRETQAILPLRGKILNVEKARLDRILGNAEIRTMITAFGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI +D FDI+KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI G +Y+ +PPLY Sbjct: 479 GIHED-FDISKLRYNKIIIMTDADVDGAHISTLLLTFFYRFMPDLIKKGHVYLAQPPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + + K + Y +E L L + G + + L Sbjct: 538 LEKNKKVWYAYSDEELSAILAEVGRDQNNKIQRYKGLGEMDASQLWE 584 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ L I + + + +QRYKGLGEM+ASQLWETT++P+ R Sbjct: 533 PPLYKLEKNKKVWYAYSDEELSAILAEVGRDQNNKIQRYKGLGEMDASQLWETTMDPEHR 592 Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L +V + + D FS LMGD+VEPRREFI+ N+ LDI Sbjct: 593 ILKKVYFDEEISSEIDLTFSTLMGDKVEPRREFIETNAKYVKNLDI 638 >gi|229826860|ref|ZP_04452929.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC 49176] gi|229788478|gb|EEP24592.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC 49176] Length = 636 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 278/584 (47%), Positives = 387/584 (66%), Gaps = 4/584 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G I V Sbjct: 2 SAEYGADQIQILEGLEAVRKRPGMYIGSTS-LKGLHHLVYEIVDNSVDEALAGECSHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV D+GRGIP ++ + G+ A +V+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 FINEDNSITVVDDGRGIPVGINSKSGLPAVQVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL++ ++ +G Y+ + G + L G GT VTFLP DIF Sbjct: 121 VVNALSEWLEVLVETDGKAYKQRYERGKVITELTEIG-TTERHGTTVTFLPDKDIFEETV 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y T++HRLRE++FL ++ISL D+R + + Y+GGI +VSYL++++ L Sbjct: 180 FEYSTIKHRLREMAFLTKGLRISLTDRREEGKKTDSFHYEGGIMEYVSYLNKNQTVLYDK 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I +G + + +++A++ NDGY+E F NNI +GGTHL+G R+A+T+ Y + Sbjct: 240 IIYCEGKKGTVQVEVALQHNDGYNEGCYSFVNNINTPEGGTHLTGFRNAITKTFNEYAKI 299 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ G+D REG T+++SIK+P+P+F QTK+KL +SE R VE+ ++ + Sbjct: 300 MKLVKDSDPALTGEDIREGMTAIVSIKIPEPQFEGQTKQKLGNSEARGAVETIASEQIMI 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +LE++P K+IV+K L A RDAAR+ARDLTRRK L+ +LPGKLADCS+++P E Sbjct: 360 FLEQNPAVGKMIVEKALLAQRARDAARKARDLTRRKTALEYMNLPGKLADCSDKNPDNCE 419 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 ++LVEGDSAGGSAK R R QAILPLRGKILNVE++R DK+L ++EI ++ITA GTGI Sbjct: 420 IYLVEGDSAGGSAKDARDRATQAILPLRGKILNVEKSRLDKILENKEIQSMITAFGTGI- 478 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FDI+KLRY KIIIMTDAD+DGAHI TL+LTF +R MP LI G +Y+ +PPLY + + Sbjct: 479 HDDFDISKLRYKKIIIMTDADIDGAHIDTLMLTFIYRFMPELIKQGHVYLAQPPLYKVEK 538 Query: 547 GKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 G + Y +++ LE+ + G + L Sbjct: 539 GNKIWYAYNDKELENIMSEIGRDSNNKIQRYKGLGEMDAEQLWE 582 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + G+KI L+ I S + + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 531 PPLYKVEKGNKIWYAYNDKELENIMSEIGRDSNNKIQRYKGLGEMDAEQLWETTMDPERR 590 Query: 761 SLLRVKITD--ASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL+V + + AS+ D F+ LMGD+VEPRREFI++N+ LDI Sbjct: 591 VLLKVMMDEENASEIDLTFNTLMGDKVEPRREFIEQNAKYVRNLDI 636 >gi|187934052|ref|YP_001884271.1| DNA gyrase subunit B [Clostridium botulinum B str. Eklund 17B] gi|187722205|gb|ACD23426.1| DNA gyrase, B subunit [Clostridium botulinum B str. Eklund 17B] Length = 635 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 299/641 (46%), Positives = 423/641 (65%), Gaps = 9/641 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 2 EQNNQKYDENQIQVLEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNSIDEALAGYCKN 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V +N D S T SD+GRG+P +H + SA EVIMT LHAGGKF YKVSGGLHGV Sbjct: 61 IEVKINKDNSITSSDDGRGMPVGMHPKMHKSAVEVIMTILHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS + +KREG+I++ + G + L G+ ++GT + F P ++IF Sbjct: 121 GASVVNALSEQCIVTVKREGHIWKQEYSKGKVLYDLKQIGNTE-ESGTTIYFKPDAEIFD 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F++DTL RLREL+FLN + I LID R+ RE +Y+GGI++FVSYL+R+K PL Sbjct: 180 EVLFDFDTLSQRLRELAFLNKGINIKLIDSRND--REENYYYEGGIKSFVSYLNRNKTPL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G +D ++++L +++NDGY EN+ F NNI +GGTHL G ++ALTR Y Sbjct: 238 HPEPIYVEGIKDKVTVELGLQYNDGYTENLFSFANNIDTIEGGTHLVGFKTALTRAFNDY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 ++ K++ ++ GDD REG T+V+S+K+ DP+F QTK KL +SEV+ +V+S V++ Sbjct: 298 AKRFGFIKENDKNFSGDDIREGLTAVISVKIEDPQFEGQTKTKLGNSEVKGIVDSIVSEY 357 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 + +LEE+P +KII+ K L A+ R+AAR+AR+LT RK VL+ +LPGKLADCS +DP+ Sbjct: 358 IGIFLEENPGISKIIIDKALMAARAREAARKARELT-RKSVLERTTLPGKLADCSSKDPR 416 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+++VEGDSAGGSAKQGR R+ QAILPLRGKI+NVE+ R DK+L+S+ I +++TA G Sbjct: 417 ECEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIMNVEKQRLDKILNSETIRSMVTAFGG 476 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG+D FDI K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPL+ Sbjct: 477 GIGKD-FDIEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMRELVEQGHVYIAQPPLFR 535 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK Y + L+ L++ + KG+ N + + +D + Sbjct: 536 VGKGKKEVYAYSDSELDQVLLDMGGKDTSVDIQRYKGLGEMNATQLW---DTTMDPAKRI 592 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + I + E + + N +N Sbjct: 593 LLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNAKNVVNL 633 Score = 169 bits (427), Expect = 3e-39, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 5/128 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIGRKGIS--M 736 + +F +Y R + K ++ L + +G K S + Sbjct: 508 LLLTFFYRYMRELVEQGHVYIAQPPLFRVGKGKKEVYAYSDSELDQVLLDMGGKDTSVDI 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA+QLW+TT++P R LL+ +I DA AD++F+ LMG++VEPRREFI++N+ Sbjct: 568 QRYKGLGEMNATQLWDTTMDPAKRILLKAEIEDAMAADEIFTILMGEKVEPRREFIEQNA 627 Query: 797 LP-SALDI 803 LDI Sbjct: 628 KNVVNLDI 635 >gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909] Length = 643 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 271/620 (43%), Positives = 402/620 (64%), Gaps = 6/620 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 2 EQRAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGH 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 61 IKVYIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +++ + G ++ + G++ N L + G + +GT V F P +IF+ Sbjct: 121 GSSVVNALSTQLDVKVYKNGKVHYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFT 179 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F++D L R++EL+FLN ++IS+ DKR + E Y+GGI ++V +++ +K+ Sbjct: 180 ETTVFDFDKLAKRIQELAFLNRGLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEV 239 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G D IS+++AM++ GY E V+ F NNI +GGTH G R+ALTR I Sbjct: 240 IFENPIYTDGELDGISVEVAMQYTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVIND 299 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 300 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + +L E+P AK IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS + Sbjct: 360 AFNRFLLENPQVAKKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNA 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + +ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 420 EMNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 479 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K+RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 480 TGFGAD-FDVSKVRYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 538 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ + S + + + + SK + + +DD + + Sbjct: 539 GV-KVGSEIKAYIQPGVNQ-EEELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMD 596 Query: 603 DFYPNHDKTFIEQAVISGVF 622 + ++ A + Sbjct: 597 PENRLMARVSVDDAAEADKI 616 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I + I G + LDT +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 541 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 598 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+ N++ S LDI Sbjct: 599 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 643 >gi|239827049|ref|YP_002949673.1| DNA topoisomerase IV subunit B [Geobacillus sp. WCH70] gi|239807342|gb|ACS24407.1| DNA topoisomerase IV, B subunit [Geobacillus sp. WCH70] Length = 656 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 264/601 (43%), Positives = 381/601 (63%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV++RP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MTKQSV-YEYNDDAIQVLEGLEAVRRRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GNYILVKIHKDNSITVLDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IY+ F + G L G N TGT + F P Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYQQRFEHGGKPVTTLEKIG-TTNKTGTIIQFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FNY+TL RLRE +FL ++I LID+R+ +Y+ GIEAFV YL+ Sbjct: 177 TIFSTTTFNYETLSERLRESAFLLKGLKIELIDERTG--MRDVFYYENGIEAFVEYLNED 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G ++ I ++ A ++NDGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 235 KDVLHP-VVYFEGEQNGIEVEFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKMGLLKEKDKNLEGSDIREGLSAIISVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +L+E+P + +++KK + A R+AAR+AR+ + +K L GKL Sbjct: 354 AVVSEHLTYFLQENPDISTMLIKKAIRAYQAREAARKAREEARSGKKRKGKETVLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI Sbjct: 414 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIHAIGGGVG-PDFSLDDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY I+ + + ++Y +E L++ + I+ + + + + Sbjct: 533 IALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFGKGYTIQRYKGLGEMNADQLWETTM 592 Query: 592 D 592 + Sbjct: 593 N 593 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLADILKNEEINTIIHAIGGGVGPDFSLDDINYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736 F + I + ++ + + K +I L + + G KG ++ Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKGTGKKEIIEYAWTDEQLKEIVKKFG-KGYTI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIEAN 632 >gi|46199524|ref|YP_005191.1| DNA gyrase subunit B [Thermus thermophilus HB27] gi|46197150|gb|AAS81564.1| DNA gyrase subunit B [Thermus thermophilus HB27] Length = 640 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 274/589 (46%), Positives = 374/589 (63%), Gaps = 7/589 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I Sbjct: 4 TEGVNYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V LN DGS TV DNGRGIP DL EEG A EVI T LH+GGKF Q +YKVSGGLHGVG Sbjct: 63 LVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYTTLHSGGKFEQGAYKVSGGLHGVG 122 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFS 183 SVVNALS W + + REG + ++F G + PL V G A TGT VTF P +IF Sbjct: 123 ASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFG 182 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ ++ RLRE+++L + +++ D++ RE KGG+ +F L + L Sbjct: 183 NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG--REEVFLDKGGVASFAKALAEGEDLL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + P I+G+ + +++ GY+ +L + N IP +DGGTHL+ +SA +R + Y Sbjct: 241 YEKPFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K+ +K+ GDD EG +V+S+K+P+P+F QTK KL++ E + V V + Sbjct: 301 AKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYER 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L LEE+P AK + +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P+ Sbjct: 361 LLEILEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPE 420 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 ++ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ +++A+G Sbjct: 421 EAELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGV 480 Query: 484 GI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GI G+ FD+ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +PP Sbjct: 481 GIGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPP 540 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + GK ++Y+ +E L+ L G ++ L Sbjct: 541 LYRLQVGKKVEYLYSDEELQARLKELEGKSYEVQRFKGLGEMNPEQLWE 589 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 72/159 (45%) Query: 645 IAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTI 704 I E + ++ V + F + I + + Sbjct: 482 IGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPL 541 Query: 705 LSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 L + L + + K +QR+KGLGEMN QLWETT+NP+ R L R Sbjct: 542 YRLQVGKKVEYLYSDEELQARLKELEGKSYEVQRFKGLGEMNPEQLWETTMNPEKRVLKR 601 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 V++ DA +A +LF +LMG EV PRREFI+E++ + LDI Sbjct: 602 VELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 640 >gi|54021970|ref|YP_116212.1| DNA gyrase subunit B [Nocardia farcinica IFM 10152] gi|54013478|dbj|BAD54848.1| putative DNA gyrase B subunit [Nocardia farcinica IFM 10152] Length = 696 Score = 573 bits (1478), Expect = e-161, Method: Composition-based stats. Identities = 267/603 (44%), Positives = 382/603 (63%), Gaps = 34/603 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + Sbjct: 30 KSTNYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATRVD 88 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DG V D+GRGIP ++H + GI EV+MT+LHAGGKF+ +SY VSGGLHGVG+ Sbjct: 89 VTLLADGGVEVVDDGRGIPVEMHAQ-GIPTVEVVMTQLHAGGKFDSESYAVSGGLHGVGI 147 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALSS +++ I +G + ++ + L V G + TGT V F +IF Sbjct: 148 SVVNALSSRVEVEIDVDGYHWSQTYKEATP-SKL-VKGEPTDRTGTTVRFWADPEIFETT 205 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------------------SP 216 +N++T+ RL+E++FLN + I+L D+R Sbjct: 206 TYNFETVARRLQEMAFLNKGLTITLTDERVSESDVTDEIVSETAEAPKHGEPTGEAASEH 265 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 + + T Y GG+E FV +++R K+ + S + G +++AM+WN GY E+V F Sbjct: 266 KVKTRTYHYPGGLEDFVRHINRTKQAIHNSVVSFTGKGTGHELEVAMQWNSGYSESVHTF 325 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N I +GGTH G R+ALT + Y + K+ ++ GDD REG +++S+K+ + Sbjct: 326 ANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDGNLTGDDIREGLAAIVSVKVAE 385 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK IV+K + ++ R AAR+AR Sbjct: 386 PQFEGQTKTKLGNTEVKSFVQRTCNEHLTHWFEANPADAKTIVQKAVSSAQARVAARKAR 445 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 +L RRK D+ LPGKLADC +DP KSE+++VEGDSAGGSAK GR QAILPLRGK Sbjct: 446 ELVRRKSATDLGGLPGKLADCRSKDPSKSEIYIVEGDSAGGSAKSGRDSMYQAILPLRGK 505 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 I+NVE+AR DK+L + E+ ++ITA GTGI D FDI+KLRYHKI++M DADVDG HI TL Sbjct: 506 IINVEKARIDKVLKNNEVQSIITAFGTGI-HDEFDISKLRYHKIVLMADADVDGQHISTL 564 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC 576 LLT FR M L+ +G +Y+ +PPLY + +S + D L+ + L+ ++ Sbjct: 565 LLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQRSEPEFAYSDRERDGLLERGLAAGKKINK 624 Query: 577 DSK 579 D Sbjct: 625 DDG 627 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEMN +LWETT++P R L +V + DA+ AD+LF Sbjct: 611 LLERGLAAGKK-INKDDGIQRYKGLGEMNPKELWETTMDPSVRVLRQVTLDDAAAADELF 669 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 670 SVLMGEDVEARRSFITRNAKDVRFLDV 696 >gi|332523189|ref|ZP_08399441.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314453|gb|EGJ27438.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176] Length = 650 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 280/613 (45%), Positives = 398/613 (64%), Gaps = 6/613 (0%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A I V Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFASHIEVF 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGVG SV Sbjct: 72 IEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSV 131 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186 VNALS+ L +R+ + G I+ F G++ + L + G TGT V F P +IF+ Sbjct: 132 VNALSTQLDVRVYKNGQIHYQEFRRGVVVDDLKIIGETE-LTGTTVHFTPDPEIFTETVI 190 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 FN+D L R++EL+FLN ++IS+ DKR +E Y+GGI ++V YL+ K ++++ Sbjct: 191 FNFDKLAKRIQELAFLNRGLRISISDKRPGMQQEKDFHYEGGIGSYVEYLNEKKDVIIET 250 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 PI G D I++++AM++ GYHENV+ F NNI +GGTH G R+ALTR I Y +K Sbjct: 251 PIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKK 310 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 311 NKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFHR 370 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D ++E Sbjct: 371 FLLENPQIARRIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDASQNE 430 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G Sbjct: 431 LFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFG 490 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ Sbjct: 491 AD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 G ++ + + + E SK + + +DD + + Sbjct: 550 GNEIKEYI--QPGVNQETQLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENR 607 Query: 607 NHDKTFIEQAVIS 619 K ++ A + Sbjct: 608 LMAKVTVDDAAEA 620 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 62/90 (68%), Gaps = 2/90 (2%) Query: 716 ITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L D + GR S+QRYKGLGEM+ QLWETT++P+ R + +V + DA++A Sbjct: 561 VNQETQLQDALEKYSSGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMAKVTVDDAAEA 620 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D +F LMGD VEPRREFI+EN++ S LDI Sbjct: 621 DRVFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|159035681|ref|YP_001534934.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205] gi|157914516|gb|ABV95943.1| DNA gyrase, B subunit [Salinispora arenicola CNS-205] Length = 648 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 267/548 (48%), Positives = 363/548 (66%), Gaps = 10/548 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L GY D I V Sbjct: 6 KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGYCDTIDV 64 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG V+DNGRG P D H + EV +T LHAGGKF+ K+Y VSGGLHGVGVS Sbjct: 65 VLLADGGVRVTDNGRGFPVDPHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + I+++G + S+ + +PL G + TG+ V+F P +F D Sbjct: 125 VVNALSTRMAVEIQKDGYFWRQSYTDSKP-SPLEK-GEPTDATGSAVSFWPDPAVFETVD 182 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ T+ RL+E++FLN + I +D+R + RE+T YKGGI FV +L+ K Sbjct: 183 FDFQTIYRRLQEMAFLNRGLTIHFLDERVAADEDGKMREVTFCYKGGIADFVRHLNASKT 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ +S + D +S+++AM+WN+ Y E+V F NNI +GGTH G R+ALT I Sbjct: 243 PIHKSVVEFGTEEDGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVIN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + G+D REG +++S+K+ +P+F QTK KL ++ V+S V+ N Sbjct: 303 RYGAD-KRLLKSDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSFVQRVCN 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L WL+ +P EAK+I+ K A+ R AA++AR L RRK +L+ S+PGKLADC D Sbjct: 362 EWLVDWLDRNPAEAKVIITKASQAARARVAAQQARKLARRKSLLESGSMPGKLADCQSTD 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++ E+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR D++L + E+ LITAL Sbjct: 422 PRECEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI D FDI KLRYHKI++M DADVDG HI+TLLLT FR M L+ G +Y+ PPL Sbjct: 482 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540 Query: 542 YGITRGKS 549 Y I + Sbjct: 541 YKIKWNRK 548 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 640 AKDVRFLDI 648 >gi|86607821|ref|YP_476583.1| DNA gyrase subunit B [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556363|gb|ABD01320.1| DNA gyrase, B subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 642 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 276/594 (46%), Positives = 390/594 (65%), Gaps = 11/594 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 1 MTEN-----YGAEQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGY 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I ++L+ DGS +V DNGRGIP D+H + G SA ++T LHAGGKF YKVSGGL Sbjct: 55 CNDIQISLHPDGSVSVLDNGRGIPVDIHPKTGQSALVTVLTVLHAGGKFGGGGYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPS 178 HGVGVSVVNALS W+++ + REG +Y F G + L N GTEV F P Sbjct: 115 HGVGVSVVNALSEWVEVTVWREGKVYFQRFERGAVVGSLKSEPQPKGSNRRGTEVRFKPD 174 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++F+Y L R REL++LN+ ++I+ D R P T Y GGI+ +V++++ Sbjct: 175 GLIFPEREFDYAVLAARFRELAYLNAGLKITFSDLRRDPPHCETYQYAGGIKEYVAFINH 234 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K P+ I IQG RD + +++A++W D Y + ++ F NNI +GGTHL GL+++LT Sbjct: 235 EKTPIHSDIIYIQGERDGVEVEVALQWCSDVYTDTLIGFANNIRTNEGGTHLEGLKTSLT 294 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 I S K K ++ G++ REG T+++S+K+P+P F QTK KL ++EVR +V+ Sbjct: 295 LTINSQARKLNKLKDSDSNLAGENVREGLTAIVSVKVPNPEFEGQTKTKLGNTEVRGIVQ 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + V++ L+ +LE +P A+ IV K + + +AARRAR+L RRK L+ ++LPGKLADC Sbjct: 355 TLVSEALTEYLEFNPNVARGIVDKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S RDP +SE++LVEGDSAGGSAKQGR R+ QA+LPLRGKILN+E+A K+ + EI + Sbjct: 415 SCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAM 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG G+ D FD ++LRYH+II+MTDADVDG+HIRTLLLTFF+R +L+ G++YI Sbjct: 475 ITALGLGVKGDEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIA 534 Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +++Y + + L + + G + L Sbjct: 535 CPPLYKIEWGRNNVRYCYSDAEKDQILRGLPANAKYTIQRFKGLGEMMPEQLWE 588 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 5/86 (5%) Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +L + + + ++QR+KGLGEM QLWETT+NP TR+L ++ I DA +AD +F+ L Sbjct: 559 QILRGLPANAK--YTIQRFKGLGEMMPEQLWETTMNPATRTLKQITIEDAVEADRIFTIL 616 Query: 781 MGDEVEPRREFIQENS--LP-SALDI 803 MGD V PRREFI+ +S L +ALDI Sbjct: 617 MGDAVGPRREFIEAHSAHLDLAALDI 642 >gi|295103719|emb|CBL01263.1| DNA gyrase subunit B [Faecalibacterium prausnitzii SL3/3] Length = 664 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 270/607 (44%), Positives = 380/607 (62%), Gaps = 23/607 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + Y+A IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY Sbjct: 11 ADTATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 D I V + D V+DNGRGIP D+ + G+ A V+ T LHAGGKF YKV+GG Sbjct: 70 DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178 LHGVG SVVNA S WL + ++R+G YE +F G D L G+ A TGT VTF P Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGKEYEQTFRRGDPDGALKCIGTVAEGVTGTRVTFKPD 189 Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR-------------SPEPREITMF 224 ++F +++DTL+ RLRE SFLN+ V+I+L D+R P R M Sbjct: 190 PEMFKDTTVYDFDTLEKRLREESFLNAGVKITLTDERQLYTPVLEDGQEGDPCYRSEVMC 249 Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 Y+GGI++FV+Y R + L + I ++G D ++A+++N Y+E +L F NN+ Sbjct: 250 YEGGIKSFVTYLGEKRKLEVLHPNVIYLKGQTDRGVAEIALQYNSSYNELLLSFANNVNT 309 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 DGGTH G +++LTR Y K ++ G D REG V+S+K+ + F Q Sbjct: 310 PDGGTHEEGFKASLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E+R++V + V L + EE+P AK I +K A+ R AA++AR+L RRK Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR QAILPL GK+LNVE+ Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+ + ++ ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M LI G +Y+ +PPL+ + +G +++Y ++ + +++Q + G + Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEM 606 Query: 583 SKNDLRN 589 + L Sbjct: 607 NPEQLWE 613 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L + G+ IK + + + G + RYKGLGEMN QLWETT+NPD R + Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+ + LD+ Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664 >gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] Length = 646 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 282/597 (47%), Positives = 403/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVQSNASDYNDDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCSEIEITIEEDNSITVRDNGRGIPTGINEKVGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L++ + R+G Y F G + + G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTDLEVYVHRDGQKYYQRFEQGNVVMDMEERGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P +IF+ F++DTL+ R REL+FLN +++IS+ DKR Y+GGI ++V Sbjct: 179 FKPDPEIFTETTVFDFDTLRTRARELAFLNKNLRISIEDKREEHQVRKDYHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K+ + + PI ++G R++I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKSKEVIHEPPIYLEGEREDIMVEISMQYNTGFASNLISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK P+P+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPNPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 ++ + ++ L+ ++ E+P K IV+K + AS R AA+RARD+ R+ L+I++LPGK Sbjct: 359 TITDKLFSEALNKFMMENPDVGKKIVEKGVVASRARMAAKRARDVARKTSGLEISNLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR DK+L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D F++ K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV ++ L+DYL + + G ++ L Sbjct: 538 IYIAQPPLYQIKHGKEVEYVYTDKQLDDYLASIGSDTKYAIQRYKGLGEMNPEQLWE 594 Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 5/218 (2%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDKILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 ++ + L+ V + + + + I + + Sbjct: 489 GFGGDFNVAKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 548 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + + L D + SIG ++QRYKGLGEMN QLWETT+NP+ R+LL+V Sbjct: 549 KHGKEVEYVYTDKQLDDYLASIGSDTKYAIQRYKGLGEMNPEQLWETTMNPEHRTLLQVN 608 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI+EN+ LDI Sbjct: 609 INDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDI 646 >gi|171920695|ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178763|ref|ZP_02554678.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024457|ref|ZP_02570760.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518714|ref|ZP_02557214.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524147|ref|ZP_02557455.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867481|ref|ZP_03079485.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273562|ref|ZP_03206098.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554430|ref|YP_002284500.1| DNA gyrase subunit B [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550770|ref|ZP_03771719.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551162|ref|ZP_03772108.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903433|gb|EDT49722.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209375|gb|EDU06418.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018752|gb|EDU56792.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997713|gb|EDU66810.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660124|gb|EDX53504.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660957|gb|EDX54210.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250082|gb|EDY74862.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541931|gb|ACI60160.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378977|gb|EEH01342.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379924|gb|EEH02286.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 650 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 256/602 (42%), Positives = 374/602 (62%), Gaps = 17/602 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D+ + + Y A+SI++L+GL+AV+KRP MYIG T E GLHHMI+E++DN+IDE++ G+ Sbjct: 1 MNDSNKENKYTAESIKVLEGLEAVRKRPGMYIGSTQSE-GLHHMIWEIVDNSIDEAMGGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A ++ V + DG V D+GRGIP +H++ G+S E ++T LHAGGKF+ SYKVSGGL Sbjct: 60 ATVVKVIIKKDGVIRVEDDGRGIPVGIHEKTGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND-TGTEVTFLPS 178 HGVG SVVNALS K+ + + + + FIN G PL + GT + F+P Sbjct: 120 HGVGASVVNALSKNFKVWVNKNYVQHYVEFINGGHAIEPLKIINDKDIKEKGTTIEFIPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +I +++ + RL++L++LN V I + R+ Y+GG++ +++ L+ Sbjct: 180 FEIMEENEWDELKIMARLKQLAYLNKGVNIEF--ESEMTNRKEKWHYEGGLKEYIADLNA 237 Query: 239 HKKPLMQSPIRIQGSR-----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 K+PL + + + + NI ++A ++N+ Y+ + F NNI +GGT Sbjct: 238 EKEPLFDAIVYGEEEKEVKVPGHNDQTYNIKCEVAFQYNNSYNNSTHSFCNNINTTEGGT 297 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G + A+TR + Y K + +D EG T+++SIK P+P++ QTK+KL Sbjct: 298 HEEGFKLAITRLLNKYAIDKKYLKDTDDKITKEDVSEGLTAIISIKHPNPQYEGQTKKKL 357 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 +SEVR V + +L E+P E+K IV KV+ A+ R + AR+ TRRK + Sbjct: 358 GNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRRKSPFES 417 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 SLPGKLADCS RD +E+++VEGDSAGGSAK GR RE QAILPLRGKI+NVE+A+ DK Sbjct: 418 NSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVEKAKIDK 477 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +++EI +ITA G GIG F+I KLRY KIIIMTDADVDG+HIR LLLTFF+R M Sbjct: 478 IFANEEIQNMITAFGAGIG-PEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFYRYMLP 536 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI NG +YI +PPLY ++ GK+++Y ++ LE ++ G ++ + L Sbjct: 537 LIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNTKYNIQRYKGLGEMNPDQL 596 Query: 588 RN 589 Sbjct: 597 WE 598 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 7/186 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ N + ++ ++ V + Sbjct: 467 IINVEKAKIDKIFANEEIQNMITAFGAGIGPEFNIEKLRYSKIIIMTDADVDGSHIRILL 526 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS---IGRKGISMQ 737 F + + N L + G IK L+ I S + ++Q Sbjct: 527 LTFFYRY-MLPLIQNGNVYIAQPPLYKVSYGKTIKYAYSDQELEKIKSTLLNTK--YNIQ 583 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT++P R LL+V I DA+ AD FS LMGD+V PR+EFI++N+ Sbjct: 584 RYKGLGEMNPDQLWETTMDPKNRLLLKVNIEDAAIADKTFSLLMGDDVTPRKEFIEKNAK 643 Query: 798 PS-ALD 802 +D Sbjct: 644 YVKNID 649 >gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT] gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT] Length = 637 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 292/614 (47%), Positives = 414/614 (67%), Gaps = 10/614 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L G+ I Sbjct: 3 NKQVYDESQIQVLEGLEAVRKRPGMYIG-TTGIRGLHHLVYEIVDNSIDEALAGFCQNIE 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ D TV D+GRG+P +H + EVIMT LHAGGKF YKVSGGLHGVG Sbjct: 62 VLIHKDNCITVKDDGRGMPVGIHPKMKKPTVEVIMTVLHAGGKFGGGGYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS + ++R+G+I+ ++ G + + L + G ++ GT V F P +IF Sbjct: 122 SVVNALSKECNVEVRRDGHIWSQNYKKGKVVSELTIVGDT-DEHGTSVYFKPDDEIFEEV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL+FLN ++I L+D+R R Y+GGI++FVS+L+R+K+ L Sbjct: 181 EFDYSTLAQRLRELAFLNKGIKIILVDEREGNERRDEFHYEGGIKSFVSFLNRNKQTLHA 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++G++D+ +++ +++ND Y+EN+ F NNI +GGTHL+G ++ALTR + Y Sbjct: 241 EPIYVEGNKDDYLVEVGLQYNDTYNENIFSFANNIDTVEGGTHLAGFKTALTRVLNDYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K++ +++ GDD REG T+V+S+K+ DP+F QTK KL ++EVR +V+S V++ +S Sbjct: 301 RYGFLKENDKNLSGDDTREGLTAVISVKLTDPQFEGQTKTKLGNTEVRGIVDSIVSERVS 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LEE+P AKI+++K L A+ R+AA++AR+LTRRK VL+ SLPGKLADCS +DP + Sbjct: 361 IFLEENPDTAKIVIEKSLTAARAREAAKKARELTRRKSVLESTSLPGKLADCSSKDPSEC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E++LVEGDSAGGSAKQGR R QAILPLRGKI+NVE+ R DK+L+S +I +ITA G GI Sbjct: 421 EIYLVEGDSAGGSAKQGRDRRFQAILPLRGKIMNVEKQRLDKILNSDQIRAMITAFGAGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FDI K+RYH+IIIMTDADVDGAHI TLLLTFF+R M L+ G +YI +PPLY + Sbjct: 481 GKD-FDIEKIRYHRIIIMTDADVDGAHIATLLLTFFYRYMRELVDGGHVYIAQPPLYQVK 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 +GKS+ Y + L++ L D I + +D D + + Sbjct: 540 KGKSVNYAYSDNELQEVLAQIGGK-------DKNTEIQRYKGLGEMDAGQLWDTTMNPEH 592 Query: 606 PNHDKTFIEQAVIS 619 K I+ A+ + Sbjct: 593 RTLVKVTIDDAMRA 606 Score = 170 bits (431), Expect = 8e-40, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 5/130 (3%) Query: 679 GSSIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GR-KGI 734 + + +F +Y R L + G + + L + + G+ K Sbjct: 508 ATLLLTFFYRYMRELVDGGHVYIAQPPLYQVKKGKSVNYAYSDNELQEVLAQIGGKDKNT 567 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+A QLW+TT+NP+ R+L++V I DA +AD++F+ LMGD+VEPRREFI+E Sbjct: 568 EIQRYKGLGEMDAGQLWDTTMNPEHRTLVKVTIDDAMRADEVFTILMGDKVEPRREFIEE 627 Query: 795 NSLP-SALDI 803 N+ LDI Sbjct: 628 NAKKVVNLDI 637 >gi|225570329|ref|ZP_03779354.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM 15053] gi|225160861|gb|EEG73480.1| hypothetical protein CLOHYLEM_06426 [Clostridium hylemonae DSM 15053] Length = 644 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 301/592 (50%), Positives = 393/592 (66%), Gaps = 5/592 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L G+ Sbjct: 1 MSTEKVQHEYGADEIQILEGLEAVRKRPGMYIGSTSA-RGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CDTIYVTINQDNSVTVVDNGRGIPVGINSKAGLPAVEVVFTILHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS+WL++ I EG +Y + G + L V G + TGT+VTFLP Sbjct: 120 HGVGASVVNALSNWLEVEIYSEGKVYMQRYERGKVAKKLAVIGECGSDKTGTKVTFLPDD 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFVSYLDR 238 IF F YD L+ R RE++FL ++I L D+ EP E T Y+GGI+ FV YL+R Sbjct: 180 TIFEETVFEYDVLKQRFREMAFLTKGLKIVLRDDRPEDEPVEKTFHYEGGIKQFVEYLNR 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K PL +S I +G +N+++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Sbjct: 240 SKTPLYESIIYCEGLVNNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHIVGFRNALTK 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 Y K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+S Sbjct: 300 TFNDYARKNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDS 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V+ L +LE++P AK+ V+K + A R+AAR+ARDLTRRK LD SLPGKLADCS Sbjct: 360 VVSSQLEIFLEQNPSVAKMTVEKSVMAQRAREAARKARDLTRRKSALDSMSLPGKLADCS 419 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++DPK E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +I Sbjct: 420 DKDPKNCEIYIVEGDSAGGSAKTARDRGTQAILPLRGKILNVEKARLDKIYANAEIKAMI 479 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGI D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ + Sbjct: 480 TAFGTGI-HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQ 538 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PPLY + + K + Y +E L+ L G + L Sbjct: 539 PPLYKLEKNKKVWYAYSDEELDTILREVGRDGSNKIQRYKGLGEMDAGQLWE 590 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G ++ DI R + + ++G+ I + + R + I+E Y+ + Sbjct: 484 TGIHDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 543 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 544 LEKNKKVWYAYSDEELDTILREVGRDGSNKIQRYKGLGEMDAGQLWETTMDPEHRILLRV 603 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI+EN+ LD+ Sbjct: 604 TMDDETTSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDV 644 >gi|1213062|emb|CAA63917.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155] Length = 675 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 272/678 (40%), Positives = 384/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ N Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V ++ DGS V D+GRGIP ++H G+ +V+MT+LHAGGKF+ ++Y VSG Sbjct: 60 GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L+ + R+G + + + L G +TGT + F Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQGGETK-ETGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF D+N++T+ RL+E++FLN + I L D+R Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ +V +++R K P+ QS I G +++AM+WN G Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W E +P EAK +V K + ++ Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGK ADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKSADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ ++I ALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIIRALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + +S ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|89114228|gb|ABD61709.1| DNA gyrase subunit B [Acholeplasma oculi] Length = 594 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 284/587 (48%), Positives = 390/587 (66%), Gaps = 6/587 (1%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 IL+GL+AVKKRP MYIG T GE GLHH+++E++DN+IDE+L GYA IT+ + V Sbjct: 1 ILEGLEAVKKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYASEITIEVQKGNIIQV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 +DNGRGIP D+H + A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W Sbjct: 60 TDNGRGIPVDIHPKTKRPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSLWYL 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHR 195 + I ++G IYE + GI L +TGT+ TFL IF+ +N +TL++R Sbjct: 120 VEIHKDGKIYEQKYERGIPAYDLREL-GTTEETGTKTTFLADPLIFTETTVYNLETLKNR 178 Query: 196 LRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255 +++L+FLN ++++LID R P + T Y+GGI +V +L++ K + Q I + +D Sbjct: 179 IQQLAFLNKGLKLTLIDSRLETPYQETFHYEGGIVEYVQFLNQSKTKIHQDVIYTEKEQD 238 Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315 +++++AM++ D Y N+ FTNNI +GG H G + ALTR I+ Y + Sbjct: 239 GVTVEIAMQFVDSYSPNIHSFTNNISTTEGGMHEDGFKMALTRVISKYADDLKMK--KDD 296 Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375 ++G+D REG T+++S+K P+P+F QTK KL + EVR++ + + L +L E+P +A Sbjct: 297 VILGEDAREGLTAIISVKHPEPQFEGQTKTKLGNPEVRAITSQILGESLERFLLENPQQA 356 Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 K+IV KVL A+ R AAR+A++LTRRK LD KLADC +DP KSE+++VEGDSA Sbjct: 357 KLIVDKVLLATRARVAARKAKELTRRKSPLDALGFASKLADCRSKDPMKSEIYIVEGDSA 416 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAKQGR E QAI+PLRGK+LNVE+AR DKMLS++EI LI A+GTGI D FDI KL Sbjct: 417 GGSAKQGRDSEFQAIMPLRGKVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKL 475 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555 RYHKI+IMTDADVDGAHIRTLLLTF FR M LI G++Y +PPLY +T GK+L+YV Sbjct: 476 RYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYS 535 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 E+ L + L + I+ + + ++ +D A + IK Sbjct: 536 EDELNETLKSIETKPGIQRYKGLGEMNAEQLWDTTMDPATRTLLQIK 582 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 3/159 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + + ++ N + + + + +V V + Sbjct: 438 VLNVEKARLDKMLSNKEIVNLIQAMGTGISDEFDITKLRYHKIVIMTDADVDGAHIRTLL 497 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739 F F I + + + + + + L +T+ S + G +QRY Sbjct: 498 LTFLFRHMRPLIDAGYVYAAQPPLYKVTWGKNLKYVYSEDELNETLKSIETKPG--IQRY 555 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 KGLGEMNA QLW+TT++P TR+LL++K+ DA +AD +FS Sbjct: 556 KGLGEMNAEQLWDTTMDPATRTLLQIKLEDAIEADQVFS 594 >gi|86606189|ref|YP_474952.1| DNA gyrase subunit B [Synechococcus sp. JA-3-3Ab] gi|86554731|gb|ABC99689.1| DNA gyrase, B subunit [Synechococcus sp. JA-3-3Ab] Length = 642 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 278/594 (46%), Positives = 390/594 (65%), Gaps = 11/594 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N Y A+ IQ+L+GL+AV++RP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 1 MTEN-----YGAEQIQVLEGLEAVRRRPGMYIGST-GPKGLHHLVYEVVDNSVDEALAGY 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VTL+ DGS +V DNGRGIP D+H + G SA +MT LHAGGKF YKVSGGL Sbjct: 55 CNEIEVTLHPDGSVSVLDNGRGIPVDIHPKTGQSALVTVMTVLHAGGKFGGGGYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPS 178 HGVGVSVVNALS WL+ R+ REG +Y F G + L GTEV F P Sbjct: 115 HGVGVSVVNALSEWLEARVWREGKVYFQRFERGAVVGSLQSEPQPAGAQRRGTEVRFKPD 174 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++F+Y L RLREL++LN+ ++I D R P + GGI+ +V++++ Sbjct: 175 ELIFPEREFDYSLLAARLRELAYLNAGLKIIFSDLRRDPPHREVYQFAGGIKEYVAFINH 234 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K P+ I ++G RD + ++ A++W D Y + ++ F NNI +GGTHL GL++ALT Sbjct: 235 EKTPIHPDIIYVRGERDGVEVEAALQWCADVYTDTLIGFANNIRTTEGGTHLEGLKTALT 294 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 I S K K ++ G++ REG T++L++K+P+P F QTK KL ++EVR +V+ Sbjct: 295 LTINSQARKLNKLKDSDSNLAGENVREGLTAILAVKVPNPEFEGQTKTKLGNTEVRGIVQ 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + V++ L+ +LE +P A+ IV+K + + +AARRAR+L RRK L+ ++LPGKLADC Sbjct: 355 TLVSEALTEYLEFNPNVARGIVEKAIQSFNAAEAARRARELVRRKSALESSTLPGKLADC 414 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S RDP +SE++LVEGDSAGGSAKQGR R+ QA+LPLRGKILN+E+A K+ + EI + Sbjct: 415 SCRDPAESEVYLVEGDSAGGSAKQGRDRQFQAVLPLRGKILNIEKADPAKIYKNAEIQAM 474 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALG G+ + FD ++LRYH+II+MTDADVDG+HIRTLLLTFF+R +L+ G++YI Sbjct: 475 ITALGLGVKGEEFDPSQLRYHRIILMTDADVDGSHIRTLLLTFFYRYQKALLEQGYVYIA 534 Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I +++Y +E E L + + + G + L Sbjct: 535 CPPLYKIEWGRNNVRYCYNEAEKEQVLRSLPANTKYTIQRFKGLGEMMPEQLWE 588 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 3/73 (4%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QR+KGLGEM QLWETT+NP TR L ++ I DA++AD +F+ LMGD V PRREFI+ Sbjct: 570 YTIQRFKGLGEMMPEQLWETTMNPATRVLKQITIEDAAEADRIFTILMGDAVGPRREFIE 629 Query: 794 ENS--LP-SALDI 803 +S L +ALDI Sbjct: 630 AHSAQLDLAALDI 642 >gi|323484278|ref|ZP_08089646.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum WAL-14163] gi|323694735|ref|ZP_08108893.1| B subunit [Clostridium symbiosum WAL-14673] gi|323402430|gb|EGA94760.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum WAL-14163] gi|323501172|gb|EGB17076.1| B subunit [Clostridium symbiosum WAL-14673] Length = 639 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YDADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DN++DE L G + I Sbjct: 1 MAKTQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECNDI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP ++HK+ G+SA ++++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERIVLSTLHAGGKFDNNAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179 SVVNALS + + + + G I+ ++ GI L V G +TGT++ F+P Sbjct: 119 SSVVNALSEHMDVTVYKNGQIHHDAYERGIPTVKLVDGLLPVIGKT-RETGTKINFMPDG 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F + L+ RL E ++LN + I +KR+ E +IT GI A+V L+ Sbjct: 178 EIFEKTRFKAEWLKSRLHETAYLNPRLSIHYENKRAGEAEKITYSEPEGILAYVKELNST 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ P +G+ +NI +++A ++ D + ENVL F NNI ++GGTHL G ++ T Sbjct: 238 KTPVH-EPFYFKGTSENIEVEVAFQFVDTFEENVLGFCNNIFTQEGGTHLVGFKTRFTTM 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V+++K PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADCTKAVFNV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L + + + K ++ ++ +R A +A+ K S GKLA+C Sbjct: 357 TGEELQLYFDRNVEVLKAVIACAEKSAKIRKAEEKAKTNMLTKSKFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKATMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 G G + + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI NG +YI Sbjct: 476 TFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELISNGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + +Y+ DE++LE Y N + ++ + + ++ ++ Sbjct: 536 AMPPLFKVIPKKGKEEYLYDEKALERYRKNHTGDFTLQRYKGLGEMDAEQLWETTLNPEN 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 +I K ++ E + Sbjct: 596 RILKRVEIEDARMASEITEMLM 617 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 51/68 (75%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+ R L RV+I DA A ++ LMG EV PRR+FI E Sbjct: 571 TLQRYKGLGEMDAEQLWETTLNPENRILKRVEIEDARMASEITEMLMGSEVPPRRQFIYE 630 Query: 795 NSLPSALD 802 ++ + +D Sbjct: 631 HADEAEID 638 >gi|56963754|ref|YP_175485.1| DNA topoisomerase IV subunit B [Bacillus clausii KSM-K16] gi|56909997|dbj|BAD64524.1| DNA topoisomerase IIA subunit B [Bacillus clausii KSM-K16] Length = 656 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 267/661 (40%), Positives = 381/661 (57%), Gaps = 22/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAK--QHVEYNEDAIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLVYEIVDNAVDEALGGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S ++ D GRG+P +H G EVI T LHAGGKF Q Y SGGL Sbjct: 58 GNTIKVTIHKDQSVSIEDEGRGMPVGMH-RSGKPTPEVIFTVLHAGGKFGQGGYATSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ IKR+G Y F G L G +GT V F P Sbjct: 117 HGVGASVVNALSEWLEVEIKRDGYRYTQRFEQGGKPVTTLEKKGKT-RASGTTVRFKPDE 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FN + L RLRE +FL VQI L DKR + + G+EAFV YL+ Sbjct: 176 GIFSTIQFNSEILAERLREAAFLLKGVQIELTDKRPEKELHEVFKFDTGLEAFVDYLNEG 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + GS ++I +D + +++D Y ENVL F NN+ +DGGTH G ++A+TR Sbjct: 236 KEALHP-VVSFSGSANDIQMDFSFQFHDAYTENVLSFVNNVRTRDGGTHELGAKTAMTRI 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + + K K+ +++ G D REGFT+V+S+++P+ +F QTK KL + E RS V+ Sbjct: 295 MNEHARKIGVLKEKDKNLDGSDIREGFTAVVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ LS +LEE+P A +++KK + A+ R+AAR+AR+ +K L GKL Sbjct: 355 AIVSENLSYFLEENPAVATMLLKKAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P ++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ D ++ ++EI Sbjct: 415 PAQSRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIR 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D FD Y K++IMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 475 TIIHTIGAGVGAD-FDSADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIY 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y DE L+ + + G ++ L Sbjct: 534 IALPPLYKVSKGSGKKEQVEYAWDENELQA-ALKKVGRGSTVQRYKGLGEMNATQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + S +A L E Sbjct: 592 ----TMDPATRTLIRVRLEDAARAEKHVATLMGDKVEPRRKWIESHVAFGLEEDTNILEN 647 Query: 652 S 652 Sbjct: 648 E 648 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + + ++ +++ L S+N RN + Sbjct: 378 KAMKAAQAREAARKAREDARNGKKNKRKDVLLSGKLTPAQSRNPARNELYLVEGDSAGGS 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + ++ ++ ++ I + + N D Sbjct: 438 AKQGRDRKFQAVLPLRGKVINTEKAKLDDIMKNEEIRTIIHTIGAGVGADFDSADCNYDK 497 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---G 718 +V + F + I +I + + G K ++ Sbjct: 498 VVIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGKIYIALPPLYKVSKGSGKKEQVEYAWD 557 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + +GR G ++QRYKGLGEMNA+QLWETT++P TR+L+RV++ DA++A+ + Sbjct: 558 ENELQAALKKVGR-GSTVQRYKGLGEMNATQLWETTMDPATRTLIRVRLEDAARAEKHVA 616 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I+ + Sbjct: 617 TLMGDKVEPRRKWIESH 633 >gi|291550229|emb|CBL26491.1| DNA topoisomerase IV subunit B [Ruminococcus torques L2-14] Length = 640 Score = 573 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 255/620 (41%), Positives = 363/620 (58%), Gaps = 14/620 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G+ I V Sbjct: 4 NNTYDAGSIAVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFCSEIQV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL DGS TVSDNGRG+P D+H++ G+SAA ++ T LHAGGKF+ +YK SGGLHGVG S Sbjct: 63 TLEKDGSATVSDNGRGVPVDMHQK-GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDI 181 VVNALS+++ ++I R+G ++ + GI L G TGT V FLP I Sbjct: 122 VVNALSTYMDVKISRDGFVHHDRYERGIPVIELEDGLLPKIGKT-RKTGTTVNFLPDDTI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F + ++ RL E ++LN ++ I DKR I GI F+ L+R K+ Sbjct: 181 FEKTKFKAEEVKSRLHETAYLNPNLTIVFDDKREGSVEHIVYHEPEGIIGFIQDLNRKKE 240 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L P+ +G D I +++ +++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 241 VLH-DPVYFKGEADGIEVEVTLQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 299 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + V Sbjct: 300 QYAREIGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKAVSKVTG 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + + + + + K ++ A+ +R +A+ K S GKLA+C RD Sbjct: 360 EEIVRFFDRNLDTLKTVLSSAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 419 PKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAF 478 Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G +YI Sbjct: 479 GCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIAM 538 Query: 539 PPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + +Y+ D+++LE Y + ++ + + ++ +D ++ Sbjct: 539 PPLYKAMPKSGEEEYLYDDKALERYRKTHTGPFTLQRYKGLGEMDAEQLWETTLDPERRM 598 Query: 598 DKLIKDFYPNHDKTFIEQAV 617 K ++ + E + Sbjct: 599 LKRVEIEDARMASSVTEMLM 618 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 50/69 (72%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA A + LMG EV PRR FI E Sbjct: 572 TLQRYKGLGEMDAEQLWETTLDPERRMLKRVEIEDARMASSVTEMLMGTEVPPRRNFIYE 631 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 632 NATEAELDI 640 >gi|291297544|ref|YP_003508822.1| DNA gyrase subunit B [Stackebrandtia nassauensis DSM 44728] gi|290566764|gb|ADD39729.1| DNA gyrase, B subunit [Stackebrandtia nassauensis DSM 44728] Length = 656 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 270/559 (48%), Positives = 365/559 (65%), Gaps = 14/559 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A S+ +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ G+ D Sbjct: 5 EKKQDDYNAGSLTVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGHCDT 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ D V DNGRG P DLH + EV +T LHAGGKF+ KSY VSGGLHGV Sbjct: 64 IDVTILADNGVRVIDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDSKSYAVSGGLHGV 123 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+SVVNALS+ +++ I+R+G ++ S+ + + PL G TGT V+F P IF Sbjct: 124 GISVVNALSTRIEMEIQRDGFVWTQSYKHSVP-GPLEQ-GEKSRKTGTSVSFWPDDTIFE 181 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------SPEPREITMFYKGGIEAFVSYL 236 +N++T+ RL+E +FLN +++I L D+R +PRE+ Y GI FV +L Sbjct: 182 TTVYNFETIYRRLQEYAFLNKNLKIVLRDERPRPESEEDTKPREVVFQYAEGIADFVRHL 241 Query: 237 DRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 + K PL +S + + D S+++AM+WN+ Y E+V F N I +GGTH G R+ Sbjct: 242 NATKSPLHKSVVMFEAKSEEDGSSLEVAMQWNESYGESVYTFANAINTHEGGTHEEGFRA 301 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALT + Y K R + GDD REG +++S+K+ +P+F QTK KL ++EV+S Sbjct: 302 ALTTCVNKYGTDRKLLKGTDR-LSGDDIREGLAAIVSVKLVEPQFEGQTKTKLGNTEVKS 360 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ N+ L W + +P EAK I+ K A+ R AA +AR L RRK +L+ +S+PGKL Sbjct: 361 FVQRVCNEWLVDWFDRNPSEAKTIITKASAAAQARKAAAQARKLARRKSLLETSSMPGKL 420 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC DP +SE+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR DK+L + E+ Sbjct: 421 ADCQSTDPSESEMFVVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDKILKNNEV 480 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +ITALGTGI D FDI KLRYHKII+M+DADVDG HI TLLLT FR M L+ G + Sbjct: 481 QAMITALGTGI-HDDFDIEKLRYHKIILMSDADVDGQHINTLLLTLLFRMMRPLVEMGHV 539 Query: 535 YIIKPPLYGITRGKSLQYV 553 Y+ +PPLY I + V Sbjct: 540 YMSQPPLYKIKWNRKGDQV 558 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN ++LWETT+NP TR+LL+V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 588 IQRYKGLGEMNYTELWETTMNPATRALLQVTLDDAATADELFSVLMGEDVETRRNFIQRN 647 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 648 AKDVRFLDI 656 >gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603] gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603] Length = 640 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 297/592 (50%), Positives = 406/592 (68%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I VT+ D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADEINVTIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ G+ L GS + TGT + F S Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSS 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLDR 238 IF+ +NY+TLQ R+REL+FLN +QI+L D+R + R+ + Y+GGI+++V L+ Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDIRQDSYHYEGGIKSYVEMLNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPIHGEPIYIHQSKDDIEVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 299 VLNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P +IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 359 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI ++I Sbjct: 419 SKNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PPLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSIARYKGLGEMNADQLWE 589 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + + Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE- 564 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ RS+L+V + DA AD F LMGD Sbjct: 565 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEMLMGDV 621 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 622 VENRRQFIEDNAVYANLD 639 >gi|160893407|ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50] gi|156864802|gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50] Length = 638 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 286/585 (48%), Positives = 406/585 (69%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +++YDA+ IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L GY + I V Sbjct: 2 SNNYDAEQIQVLEGLEAVRKRPGMYIGSTS-TRGLHHLVYEIVDNSVDEALAGYCNHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV DNGRGIP + ++ G SA EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 FINPDNSITVVDNGRGIPVGIQEKTGKSALEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ + R+G++Y+ ++ G +D+ L + A + +GT+VTFLP IF Sbjct: 121 VVNALSEWLEVEVTRDGHVYKQTYKRGNVDSTLQIIADAPEDKSGTKVTFLPDKTIFDDW 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++YDTL+ RLRE +FL ++I+L D R P+E Y+GGI+ FV Y++RH++ L Sbjct: 181 IYDYDTLRTRLRETAFLTKGLKITLTDLRVDPPKERHFHYEGGIKEFVEYMNRHREALYD 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D + +++AM+ ND Y+E + + NNI +GGTHL+G +SA+T+ Y Sbjct: 241 KVIYCEGLKDGVYVEVAMQHNDSYNEMIHSYVNNINTPEGGTHLTGFKSAITKIFNDYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K+ + ++ G+D REG ++++S+K+ +P+F QTK+KL +SEVR VVE+ V++ L+ Sbjct: 301 KNNLLKEKEDNLSGEDLREGMSAIVSVKIGEPQFEGQTKQKLGNSEVRPVVENIVSEQLT 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AKII+ K + A R AARRARD+ R+ + D +LPGKLADCS++DPK Sbjct: 361 YFLEQNPNIAKIIINKSVMAQRARIAARRARDVARKANLADNMALPGKLADCSDKDPKNC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK+ RSR QAILPLRGKILNVE+AR D++L + EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKKARSRATQAILPLRGKILNVEKARIDRILENAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 ++ FDI+KLRY+KIIIMTDADVDGAHI TLLLTFF+R MP LI G +Y+ +PPLY + Sbjct: 481 HEN-FDIDKLRYNKIIIMTDADVDGAHIATLLLTFFYRFMPDLIRKGHVYLAQPPLYKLE 539 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y ++ L L + G + L Sbjct: 540 KNKKIWYAYSDDELNSILNEVGRDQSNKIQRYKGLGEMDAEQLWE 584 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 19/113 (16%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + KI L++I + + S +QRYKGLGEM+A QLWETT++P+ R Sbjct: 533 PPLYKLEKNKKIWYAYSDDELNSILNEVGRDQSNKIQRYKGLGEMDAEQLWETTMDPEKR 592 Query: 761 SLLRVKITDASQADD---------LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LL+V A D F+ LMGD+VEPRR+FI+ N+ LDI Sbjct: 593 ILLKV-------AIDDDDESEIDMTFNVLMGDKVEPRRQFIETNAKFVKNLDI 638 >gi|325663387|ref|ZP_08151837.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA] gi|325470841|gb|EGC74071.1| DNA gyrase subunit B [Lachnospiraceae bacterium 4_1_37FAA] Length = 548 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 289/546 (52%), Positives = 389/546 (71%), Gaps = 3/546 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 2 STEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALGGYCDTIFV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N D S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 61 SINKDNSITVIDNGRGIPVGINHKAGLPAVEVVFTVLHAGGKFGGGGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G L V G + TGT+VTFLP ++IF Sbjct: 121 VVNALSVWLEVEIYNEGKIYKQRYERGKSAYQLKVVGECEADKTGTKVTFLPDAEIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y+ L+ R RE++FL +++I L D+R E E T Y+GGI+ FV YL++ K PL + Sbjct: 181 EFDYNILKQRFREMAFLTKNLKIVLADERPEERIEKTFHYEGGIKEFVQYLNKSKTPLYE 240 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +D +++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Y Sbjct: 241 QIIYCEGQKDGVAVEVAMQHNDSYTDNTYGFVNNITTPEGGTHVVGFRNALTKTFNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V+S ++ L Sbjct: 301 KNKLLKDSEPNLSGEDIREGLTAIISVKIQDPQFEGQTKQKLGNSEARGAVDSVLSTQLE 360 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK++++K + A R+AAR+ARDLTRRK L+ SLPGKLADCSE+D K Sbjct: 361 IFLEQNPQVAKVVIEKSVLAQRAREAARKARDLTRRKSALEGMSLPGKLADCSEKDASKC 420 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 421 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 480 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 481 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPELIKQGYVYLAQPPLYKLE 539 Query: 546 RGKSLQ 551 + KS+ Sbjct: 540 KTKSMV 545 >gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88] gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88] Length = 637 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 291/589 (49%), Positives = 401/589 (68%), Gaps = 7/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + YD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN+IDE+L GY D Sbjct: 2 EQDKKQKYDESQIQVLEGLEAVRKRPGMYIGST-GARGLHHLVYEIVDNSIDEALAGYCD 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I + +N D S T+ DNGRG+P LH + EVIMT LHAGGKF YKVSGGLHG Sbjct: 61 KIDIYINEDNSITIEDNGRGMPVGLHPKMNKPTVEVIMTILHAGGKFGGGGYKVSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALSS ++ +KR+G ++ + GI L G GT+ F P IF Sbjct: 121 VGASVVNALSSECRVEVKRDGYVWRQVYEKGIAVTGLEKIGETSQH-GTKTYFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F YD L RLRE++FLN + I++ DKR + Y+GGI++FV YL+R K+ Sbjct: 180 DELEFEYDVLVQRLREMAFLNKGINITIEDKRVDKK--EDFHYEGGIKSFVLYLNRTKEV 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + PI I+G +D +++++++NDGY EN+ F NNI +GGTHL+G +SA+TR Sbjct: 238 LHKEPIYIEGMKDEHMVEISIQYNDGYAENIFSFANNISTIEGGTHLAGFKSAVTRAFND 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K++ +++ G+D REG T+++S+K+ DP+F QTK KL +SEVR +V++ V + Sbjct: 298 YARRYGFLKENDKNLAGEDIREGITAIISVKLIDPQFEGQTKTKLGNSEVRGIVDTIVGE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 G+ +LEE+P AK I+ K L A+ R+AAR+ARDLTRRK VL+ SLPGKLADCS +DP Sbjct: 358 GVGNFLEENPQIAKSIIDKTLMAARAREAARKARDLTRRKSVLESTSLPGKLADCSSKDP 417 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+ E+++VEGDSAGGSAKQGR+R QAILPLRGKI+NVE+ R DK+L+S I ++ITA G Sbjct: 418 KECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRLDKILNSDTIKSMITAFG 477 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GIG+D FD+ K+RY++IIIMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY Sbjct: 478 AGIGKD-FDVEKIRYNRIIIMTDADVDGAHIRTLLLTFFYRYMKELVENGHVYIAQPPLY 536 Query: 543 GITRGKSLQYVKDEESLEDYLINQ--SLSEEIELFCDSKGVISKNDLRN 589 +++ + YV + LE+ L ++ G ++ L + Sbjct: 537 KVSKDRKEHYVYTDRELEEILDEIGGRDNKTQIQRYKGLGEMNAEQLWD 585 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + + + + K + + ++ V + Sbjct: 452 IMNVEKQRLDKILNSDTIKSMITAFGAGIGKDFDVEKIRYNRIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQR 738 F + + + + + + + + + + L + + IG + +QR Sbjct: 512 LTFFYRYMKELVENGHVYIAQPPLYKVSKDRKEHYVYTDRELEEILDEIGGRDNKTQIQR 571 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL- 797 YKGLGEMNA QLW+TT+NPD R LLR I DA AD++F+ LMGD+V+ RREFIQEN+ Sbjct: 572 YKGLGEMNAEQLWDTTMNPDKRILLRATIEDAMAADEIFTILMGDKVDLRREFIQENAKT 631 Query: 798 PSALDI 803 LD+ Sbjct: 632 VVNLDV 637 >gi|193216997|ref|YP_002000239.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1] gi|193002320|gb|ACF07535.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1] Length = 647 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 253/599 (42%), Positives = 366/599 (61%), Gaps = 14/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + S Y A +IQ+L+GL+AV+KRP MYIG G GLHH+I+E++DN++DE++ G+ Sbjct: 1 MSKQEEISKYGAKNIQVLEGLEAVRKRPGMYIGSI-GFRGLHHLIWEIVDNSVDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ + V DNGRG+P D+H SA E I+T LHAGGKF+ +YKVSGGL Sbjct: 60 ATNIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLHAGGKFDSTNYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVG SVVNALS ++ +KR G +Y +IN G PL V G ++TGT + F P Sbjct: 120 HGVGASVVNALSDSFEVWVKRGGKLYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I F++ T+ +++++LN + IS + + ++GGI +VS L+R Sbjct: 180 YQIMDKVAFDFGTIIDHAKQIAYLNKGLSISC--EDITKNTIRNFCFEGGIIDYVSELNR 237 Query: 239 HKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 KK ++ I +G+ ++ +++A+++N+ Y N++ + NNI +GGTH G Sbjct: 238 GKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEGGTHEQG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ALTR Y E + K + + +D ++G +++SIK DP F QTK KL + + Sbjct: 298 FYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKGKLENKD 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R +++ L ++ E+P AK I++K L R AA AR+ +R+K + +LP Sbjct: 358 ARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGSEFGNLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS ++ + ELF+VEG+SAGGSAK GR R QAILPLRGKI+N E+ F ++S+ Sbjct: 418 GKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDFTSVMSN 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +E+ ++I ALGTGI D F+INKL+YHKI+IMTDADVDGAHI TLLLTFF+R M LI Sbjct: 478 KEVSSMIHALGTGI-TDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMRPLIEY 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 GF+YI +PPLY I+ K +Y ++ E+ L S+ I G + L Sbjct: 537 GFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKLEDSKNISIQRYKGLGEMDPEQLWE 595 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 3/84 (3%) Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +L + K IS+QRYKGLGEM+ QLWETT+NP TR +L+V+I D + D +FS Sbjct: 565 EEILSKLEDS--KNISIQRYKGLGEMDPEQLWETTMNPATRKMLQVQIDDIASCDTIFST 622 Query: 780 LMGDEVEPRREFIQENSLPS-ALD 802 LMG+E+EPR +FIQEN+ + +D Sbjct: 623 LMGEEIEPRHDFIQENAKYATNID 646 >gi|217965929|ref|YP_002351607.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23] gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23] gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99] Length = 646 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 289/597 (48%), Positives = 401/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L++ + REG Y F G + + G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IF+ F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV + LEDYL + + G ++ L N Sbjct: 538 IYIAQPPLYQIKHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWN 594 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 5/218 (2%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + S + L+ V + + + + I + + Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQI 548 Query: 708 ICNGDKIKITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + L D + S G S+QRYKGLGEMN QLW TT+NP+ R+LL+V Sbjct: 549 KHGKQVEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWNTTMNPEHRTLLQVN 608 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI++N+ LD+ Sbjct: 609 IKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646 >gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367] gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367] Length = 647 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 289/598 (48%), Positives = 401/598 (67%), Gaps = 11/598 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADEKETKAQQAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIVDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I VT+N D S TV+DNGRGIP + K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFADEIHVTVNQDNSITVTDNGRGIPIGIQKKTGKPALETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEV 173 VSGGLHGVG SVVNALS+ L+ ++ R+G Y ++F +G + P+ V + GT V Sbjct: 120 VSGGLHGVGASVVNALSTDLEAQVTRDGKTYAIAFDHGHVKTPMHVIKEGLPQDQHGTAV 179 Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 FLP DIF F+ TL R+REL+FLN ++I++ D+R +P E Y+GGI + Sbjct: 180 HFLPDPDIFRETTVFDIKTLTTRIRELAFLNKGLRITIRDERPEKPTEEDFLYEGGIRHY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL+ +K+ L + PI ++G + I++++A+++ D YH N+L FTNNI +GGTH G Sbjct: 240 VDYLNENKETLFEPPIYVEGQENGITVEVALQYTDDYHNNLLTFTNNIHTYEGGTHEEGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALTR + Y ++ K ++ ++ GDD REG T+V+S+K PDP+F QTK KL +S+ Sbjct: 300 KRALTRVVNDYARQNKLMKDNEANLTGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R+ V+ D ++ EHP A+ IV K AS R AA+RAR++TR+K L+I++LPG Sbjct: 360 RTAVDHTFADHFMRFMMEHPDVARKIVDKGTLASKARVAAKRAREVTRKKSGLEISNLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLAD + +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++ Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +L TA+GTG G D FD++K+ YHK+I+MTDADVDGAHIRTLLLT +R M L+ G Sbjct: 480 EIRSLFTAMGTGFGND-FDVSKVNYHKLILMTDADVDGAHIRTLLLTLVYRYMRPLLDAG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 F+YI PPLY + +GK +Y+ +E L+D L S + G + L Sbjct: 539 FVYIACPPLYRVRQGKMQRYLDSDEELKDLLGQLPPSPKPQIQRYKGLGEMDAEQLWE 596 Score = 164 bits (414), Expect = 8e-38, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 53/69 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+A QLWETT+NP+ R LLRV DA AD +F+ LMGD+V PRREFI+ Sbjct: 579 QIQRYKGLGEMDAEQLWETTMNPENRRLLRVDAQDAINADQVFTMLMGDKVAPRREFIEN 638 Query: 795 NSLPSALDI 803 N+ + LD+ Sbjct: 639 NATFAELDV 647 >gi|315650187|ref|ZP_07903262.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] gi|315487544|gb|EFU77852.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] Length = 650 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 287/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + N+ Y A IQIL+GL+AV+ RP MYIG GLHH++YE++DN++DE+L G+ Sbjct: 11 ECSMNTEYGASQIQILEGLEAVRVRPGMYIGSISS-RGLHHLVYEIVDNSVDEALAGFCT 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++N D S TV DNGRGIP D+ K+ GI A EV+ T LHAGGKF YK SGGLHG Sbjct: 70 EIEVSINEDNSITVKDNGRGIPVDIQKKAGIPALEVVFTILHAGGKFGGGGYKTSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDI 181 VG SVVNALS+WL +++ R+G +Y M F G + + V G TGTEV+FLP + I Sbjct: 130 VGASVVNALSTWLDVKVYRDGKVYHMRFEKGKVVEKIEVIGECDPQKTGTEVSFLPDAGI 189 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F +++D L+ RLRE +FL +++I+LID R + + + Y+GGI+ FV+YL++ K Sbjct: 190 FEETVYDFDILKIRLRETAFLTKALKITLIDNREEKRKM-SFHYEGGIKEFVTYLNKGKV 248 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + I +G+++ + +++AM+ ND Y E++ F NNI +GGTHLSG ++ALT+ Sbjct: 249 PIYEDVIYCEGTKEKVMVEVAMQHNDNYSESIYTFVNNINTPEGGTHLSGFKNALTKTFN 308 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + K ++ G+D REG +++S+K+ DP+F QTK+KL +SE ++ V S V+ Sbjct: 309 EYARSNKLLKDSDENLSGEDIREGLVAIISVKIEDPQFEGQTKQKLGNSEAQTAVNSIVS 368 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L+ +LE++P AKII +K + A R AAR+ARDLTRRK LD SLPGKLADCS ++ Sbjct: 369 EQLTYFLEQNPTVAKIISEKAITAQRARAAARKARDLTRRKSALDNMSLPGKLADCSSKN 428 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK+ E+F+VEGDSAGGSAK R R+ QAILPLRGKILNVE+AR DK+ S+ EI +ITA Sbjct: 429 PKECEIFIVEGDSAGGSAKGARRRDTQAILPLRGKILNVEKARLDKIYSNAEIKGMITAF 488 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI D FDI KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ +PPL Sbjct: 489 GTGI-HDDFDITKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQPPL 547 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 Y + + K + Y +E L + L + G + L Sbjct: 548 YKLEKNKKVWYAYSDEELNNILKEVGRDQNNKIQRYKGLGEMDAEQLWE 596 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ L+ I + + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 545 PPLYKLEKNKKVWYAYSDEELNNILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPERR 604 Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L +V + ++ + D +FS LMGD+V PRREFI+ N+ LDI Sbjct: 605 VLKKVVLDESMLSETDVVFSTLMGDQVAPRREFIEANAKYVSNLDI 650 >gi|237784642|ref|YP_002905347.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385] gi|237757554|gb|ACR16804.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385] Length = 682 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 272/587 (46%), Positives = 372/587 (63%), Gaps = 44/587 (7%) Query: 1 MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++N ++ YDA SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE+ Sbjct: 1 MAENAAENNTRHDYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 + GYA + VT+ DG V D+GRGIP +H G +V+MT+LHAGGKF+ SY V Sbjct: 60 MAGYATHVDVTIMKDGGIEVVDDGRGIPVSMHPS-GAPTVQVVMTQLHAGGKFDNDSYAV 118 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG+SVVNALS+ ++ IKR+G + +F + I D +V G TGT + F Sbjct: 119 SGGLHGVGISVVNALSTRVEAEIKRDGYRWYQNFTDAIPDE--LVQGKKARGTGTTIRFW 176 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------- 216 P D+F +F ++T+ RL+E++FLN + I+L DKRS Sbjct: 177 PDPDVFETTEFKFETIARRLQEMAFLNKGLYITLTDKRSQATETPEDADDTVEEAAAAKS 236 Query: 217 ---------------EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261 + R T Y G++ +V+ +++ K + + I D +++ Sbjct: 237 AEEAAADAEQKAKKSKERTETFHYPDGLKDYVASINKTKTAIHPTIITFDAKGDEHEVEV 296 Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321 A++WN GY ++V F N I +GGTH G R+ALT + Y + K + ++ GDD Sbjct: 297 ALQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALTSLMNRYAREHKLLKDKEPNLSGDD 356 Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 CREG +V+S+++ DP+F QTK KL ++EV+S V+ V + +S W E +P EAKIIV K Sbjct: 357 CREGLAAVISVRVADPQFEGQTKTKLGNTEVKSFVQKQVFENVSHWFESNPAEAKIIVNK 416 Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441 + +S R AAR+ARDL RRK D+ LPGKLADC +DP SEL++VEGDSAGGSAK Sbjct: 417 AVSSSQARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPTLSELYIVEGDSAGGSAKS 476 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 GR QAILPLRGKILNVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKII Sbjct: 477 GRDSMYQAILPLRGKILNVEKARLDRVLKNNEVQAIITALGTGI-HDEFDIKKLRYHKII 535 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 +M DADVDG+HI TLLLT FR M L+ G +Y+ +PPLY + GK Sbjct: 536 LMADADVDGSHIATLLLTLLFRFMRPLVEEGHVYLAQPPLYKLKWGK 582 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL GRK I+ +QRYKGLGEMN +LWETT++P R L +V++ DA++AD++ Sbjct: 596 ELLAEGLEQGRK-INKDDGIQRYKGLGEMNPKELWETTMDPSIRILRQVQLEDAAKADEI 654 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI N+ LDI Sbjct: 655 FSVLMGDDVIARRSFITRNAKDVRFLDI 682 >gi|205373638|ref|ZP_03226441.1| DNA topoisomerase IV subunit B [Bacillus coahuilensis m4-4] Length = 657 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 269/661 (40%), Positives = 396/661 (59%), Gaps = 22/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKEKKTIEYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 60 GDHIKVTIHKDNSISVEDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G +YE F N G + L GS TGT + F P + Sbjct: 119 HGVGASVVNALSEWLVVTIKRDGIVYEQRFENGGKPASSLERMGSTK-STGTTIHFKPDT 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS FNYDTL RLRE +FL ++I +ID+R + ++ GIEAFV YL+ Sbjct: 178 TMFSTTTFNYDTLSERLRESAFLLKGMKIEIIDERFDQR--DVFHFETGIEAFVEYLNED 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + ++G +++I ++ A ++NDG+ EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 236 KDSLH-KVVSLEGEQNSIEVEFAFQFNDGFSENILSFVNNVRTKDGGTHEAGAKTAMTRV 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG T+++S+++P+ +F QTK KL +SE RS V+ Sbjct: 295 FNEYARKVSILKERDKNLEGTDIREGLTAIISVRIPEELLQFEGQTKGKLGTSEARSGVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 V++ L +LEE+P + +++KK + A+ R+AAR+AR+ + +K L GKL Sbjct: 355 QVVSEHLQYFLEENPDTSALLIKKAIKAAQAREAARKAREDARSGKKRKKSETVLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ + ++EI Sbjct: 415 PAQSRNPERNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDIFKNEEIN 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G F++ + Y KI+IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 475 TIIHAIGAGVG-PEFNVEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+D + I G ++ + L Sbjct: 534 IALPPLYKVSKGTGKKEVIEYAWTDEELKDAIKKIGRGY-IIQRYKGLGEMNADQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + +A L E Sbjct: 592 ----TMDPSTRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIENNVAFGLEEDGSILEN 647 Query: 652 S 652 Sbjct: 648 E 648 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + + + E L S+N RN + Sbjct: 378 KAIKAAQAREAARKAREDARSGKKRKKSETVLSGKLTPAQSRNPERNELYLVEGDSAGGS 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + ++ ++ ++ I ++ N D Sbjct: 438 AKQGRDRKFQAILPLRGKVINTEKAKLQDIFKNEEINTIIHAIGAGVGPEFNVEDVNYDK 497 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718 +V + F + I + ++ + + K ++ Sbjct: 498 IVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGTGKKEVIEYAWT 557 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L D I IGR G +QRYKGLGEMNA QLWETT++P TR+L+RV+I DA++A+ + Sbjct: 558 DEELKDAIKKIGR-GYIIQRYKGLGEMNADQLWETTMDPSTRTLIRVRIDDAARAERRVT 616 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I+ N Sbjct: 617 TLMGDKVEPRRKWIENN 633 >gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325] gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325] Length = 638 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 284/591 (48%), Positives = 394/591 (66%), Gaps = 7/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Q Y+AD IQ+L+GL+AV+ RP MYIG T GLHH+++E++DN+IDE+L G+ Sbjct: 1 MVEKKQMQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV + D V DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 CDTITVAIEKDNWIRVEDNGRGIPIDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L+ + R+G I+ M F G + + V G + TGT + F + Sbjct: 120 HGVGASVVNALSTNLEAYVHRDGKIHSMMFERGDVVQGITVIGET-DKTGTTIRFKADPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF + YD L+ R+REL+FLN + I L D+R + +E T Y+GG+ +V L+ + Sbjct: 179 IFQETTVYEYDILRTRIRELAFLNKGITIILKDEREGQEKEETFCYEGGLLEYVEMLNEN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L I + G + ++++M++N GY N+L + NNI +GGTH SG ++ALTR Sbjct: 239 KDSLH-EAIYVHGEMEGKEVEISMQYNTGYASNILSYANNINTHEGGTHESGFKTALTRI 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY +K+ K+K S+ GDD REG +++SIK P+P+F QTK KL +SE+ ++ Sbjct: 298 INSYGKKNK-LIKEKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +L E+P AKIIV+K L AS R AA++AR+ TRRK L+ +LPGKLADCS Sbjct: 357 FSEELDRFLLENPKVAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+LS+ E+ +LIT Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLSNDEVRSLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG+ +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M LI G++YI +P Sbjct: 477 AVGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIEAGYVYIARP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+G+ GK Y +E L++ + + ++ G ++ +L + Sbjct: 536 PLFGLKVGKKEYYCHTDEELKENIEKYAADKKYTVQRYKGLGEMNAEELWD 586 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 13/193 (6%) Query: 613 IEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ 672 +E+ I V + + + + ++ + LN + K +V V Sbjct: 457 VEKVRIDKVLSNDEVRSLITAVGMGIGETLNIDKLRYHK-----------IVIMTDADVD 505 Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGR 731 + F F + I + + + L + L + I Sbjct: 506 GSHIRTLLLTFFFRYMRELIEAGYVYIARPPLFGLKVGKKEYYCHTDEELKENIEKYAAD 565 Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEMNA +LW+TT++P+ R + +V I DA +AD F LMG++VEPRR+F Sbjct: 566 KKYTVQRYKGLGEMNAEELWDTTMDPEHRLMYKVSIDDAQRADAAFDTLMGEKVEPRRKF 625 Query: 792 IQENSLP-SALDI 803 I+EN+L LDI Sbjct: 626 IEENALNVVNLDI 638 >gi|257869692|ref|ZP_05649345.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2] gi|257803856|gb|EEV32678.1| topoisomerase IV B subunit [Enterococcus gallinarum EG2] Length = 674 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 385/663 (58%), Gaps = 22/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAKKT--TEYNDASIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALSGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V DNGRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 58 GNEIDVTIHKDNSISVRDNGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL++ I R+G Y+ F + G D L G TGT V F P Sbjct: 117 HGVGASVVNALSSWLEVSIVRDGIEYQEKFKDGGKPDGTLKKIGKTRKATGTTVRFKPDD 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ F+YDTL RLRE +FL V+I+L D+R E ++ ++ GI+ FV YL+ Sbjct: 177 TIFTTTKFSYDTLAERLRESAFLLRGVKITLTDER-AELQQEVFLFEEGIKEFVDYLNEE 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I +++A ++NDGY ENVL F NN+ KDGGTH G++ ++T+ Sbjct: 236 KDTLTP-VVYFSGTKEAIEVEVAFQYNDGYSENVLSFVNNVRTKDGGTHEVGMKISMTKA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTKEKL + R+ V+ Sbjct: 295 FNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPIARNAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 + + + L +L+E+ ++++V+K + A R+AAR+AR+ +R +K + L GKL Sbjct: 355 NVIGEQLGYYLQENSEMSQMLVRKAIKAREAREAARKAREESRSGKKRKKGESLLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 415 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 475 TMIYTIGAGVG-PEFSIEDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + ++Y ++ L + G ++ + L Sbjct: 534 IALPPLYKVSKGLGKKAVVEYAWTDDELNAVTKKIGKGY-MLQRYKGLGEMNADQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + S + L EK Sbjct: 592 ----TMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSILEK 647 Query: 652 SWH 654 Sbjct: 648 KEE 650 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 376 VRKAIKAREAREAARKAREESRSGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 436 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718 D ++ + F + I + ++ + + G K + Sbjct: 496 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGLGKKAVVEYA 555 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 556 WTDDELNAVTKKIGKGYMLQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDAAQAERRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 616 TTLMGDKVEPRRKWIESH 633 >gi|220908378|ref|YP_002483689.1| DNA gyrase subunit B [Cyanothece sp. PCC 7425] gi|219864989|gb|ACL45328.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7425] Length = 645 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 399/591 (67%), Gaps = 9/591 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++Y AD IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 2 TTNYSADQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCKNILV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN DGS TV+D+GRGIPTD+ + G SA E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 ELNPDGSVTVTDDGRGIPTDIVSKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSSWL+ ++ R+G ++ F G+ L S GN TGT + F+P ++IF+ Sbjct: 121 VVNALSSWLEAKVWRDGKVFTQRFERGLPATDLKAQPSGGNRTGTAIQFMPDAEIFTETI 180 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLID-----KRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+Y TL RLREL++LN+ V+I D + EP T FY+GGI+ +VSY++ K Sbjct: 181 EFDYKTLSGRLRELAYLNAGVKIEFRDGRLDLLKRDEPLLETYFYEGGIKEYVSYMNVDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL Q I +QG R+++ +++A++W D Y +N+L F NNI DGGTHL GL++ LTR Sbjct: 241 EPLHQEIIYVQGERNDVQVEVALQWCTDAYTDNLLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++ K K+ ++ G++ REG T+V+S+K+P+P F QTK KL ++EVR +V+S Sbjct: 301 LNNFARKRNKLKEGDPNLAGENVREGMTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +L+ P I++K + A +AARRAR+L RRK VL+ ++LPGKLADCS Sbjct: 361 VGEVLTEYLDFRPAVVDSILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP+++E+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LIT Sbjct: 421 RDPREAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI + FD + LRYHKII MTDADVDGAHIRTLLLTFF+R L+ G++Y+ P Sbjct: 481 ALGLGIKGEEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLY I RG++ Y ++ + + + G + L + Sbjct: 541 PLYKIERGRNHYYCYNDRERDQIIAGLGENARYEIQRFKGLGEMMPQQLWD 591 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 8/159 (5%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + + S ++ V + F + + + + I + + Sbjct: 489 EEFDASNLRYHKIIAMTDADVDGAHIRTLLLTFFYRYQRQLVDQGYIYVACPPLYKIERG 548 Query: 711 GDKIKITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + ++ + R +QR+KGLGEM QLW+TT+NP+TR+L +V I Sbjct: 549 RNHYYCYNDRERDQIIAGLGENAR--YEIQRFKGLGEMMPQQLWDTTMNPETRTLKQVTI 606 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803 DA++AD +F+ LMGD V PRREFI+ L + LDI Sbjct: 607 EDAAEADRIFNILMGDRVAPRREFIETYGPRLNLADLDI 645 >gi|116493579|ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei ATCC 334] gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334] Length = 653 Score = 572 bits (1474), Expect = e-160, Method: Composition-based stats. Identities = 287/601 (47%), Positives = 403/601 (67%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSS---------YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51 M+D + + YDA IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN Sbjct: 1 MTDKKETAEEKKDELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDN 59 Query: 52 AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111 IDE+L G+A I V +N D S TV+D+GRGIP D+ + G A E + T LHAGGKF Sbjct: 60 GIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQSKTGRPALETVYTVLHAGGKFGG 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTG 170 YKVSGGLHGVG SVVNALS+ L + + R G Y + FI G ++ P+ V G+A ++ G Sbjct: 120 GGYKVSGGLHGVGASVVNALSTDLDVTVTRGGKRYYIDFIRGKVNMPMKVIGTAPEHEHG 179 Query: 171 TEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T+V FLP DIF+ F+ L R+REL+FLN ++++ DKR+ ++ Y+GG+ Sbjct: 180 TKVHFLPDPDIFTEIRTFDDKILTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGL 239 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +++V +L K+ L+Q PI ++G I++++A+++ + YH +L F NNI +GGTH Sbjct: 240 KSYVDFLTEKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHE 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G ++ALTR I Y +S K + GDD REG T+V+S+K PDP+F QTK KL + Sbjct: 300 TGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGN 359 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+ R+VV+ +D + +L EHP + K+I+ K + AS R AA+RAR++TR+K L+I++ Sbjct: 360 SDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISN 419 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLAD + +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +++L Sbjct: 420 LPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERIL 479 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +++EI TL TA+GTG G FDINK RYHK+IIMTDADVDGAHIRTLLLT +R M ++ Sbjct: 480 ANEEIRTLFTAMGTGFG-QDFDINKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVL 538 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLR 588 G++YI +PPLY + +GK QY+ +E L+D L S + G + N L Sbjct: 539 DAGYVYIAQPPLYRLRQGKMTQYIDSDEELQDILGQLPPSPKPEIQRYKGLGEMDANQLW 598 Query: 589 N 589 Sbjct: 599 E 599 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 3/71 (4%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+A+QLWETT++PD R LLRV DA AD +F LMGD VEPRR+FI++ Sbjct: 582 EIQRYKGLGEMDANQLWETTMDPDNRRLLRVSPKDAEAADGVFEMLMGDHVEPRRKFIED 641 Query: 795 NSLPS---ALD 802 N++ +D Sbjct: 642 NAVFVDPNNID 652 >gi|255012609|ref|ZP_05284735.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_7] Length = 620 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 273/571 (47%), Positives = 374/571 (65%), Gaps = 13/571 (2%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGDT E GLHH++YEV+DN+IDE+L GY I V +N D S TV+D+GRGIP D+H+ Sbjct: 1 MYIGDTS-EKGLHHLVYEVVDNSIDEALAGYCTYIDVVINEDNSITVTDDGRGIPVDIHE 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 +EG SA EV++T LHAGGKF++ +YKVSGGLHGVGVS VNALS++LK ++R G ++ Sbjct: 60 KEGKSALEVVLTVLHAGGKFDKGTYKVSGGLHGVGVSCVNALSTYLKAEVRRNGKVHMQE 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G + + V + TGT ++F P IF+V ++ YD L RLREL+FLN+ + + Sbjct: 120 FSCGKPLHDVQVI-DNTDKTGTTISFKPDGSIFTVTEYKYDILATRLRELAFLNAGITLR 178 Query: 210 LIDKRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 L DKR + + G++ FV Y+DR K+ L+ I I + I +++A+ + Sbjct: 179 LTDKRVLKEDGSFKSEVFHSDEGLKEFVRYIDRSKEKLIPDVIHIVTEKQGIPVEVALTY 238 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 N Y+E+V + N+I +GGTHL+G R LTR + Y E S +K K + GDD REG Sbjct: 239 NTSYNESVFSYVNDINTIEGGTHLAGFRRGLTRTLKKYAEDSKLLEKAKVEIQGDDFREG 298 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 T+V+SIK+ +P+F QTK KL +SEV V+ + + L +LEEHP EAKIIV KV+ A Sbjct: 299 LTAVISIKVAEPQFEGQTKTKLGNSEVTGAVDMAIGEALGYYLEEHPKEAKIIVDKVILA 358 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 + R AAR+AR+L +RK L LPGKLADCS +D ELFLVEGDSAGG+AKQGR R Sbjct: 359 AQARHAARKARELVQRKSPLTGGGLPGKLADCSSKDAAICELFLVEGDSAGGTAKQGRDR 418 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSF----DINKLRYHKII 501 QAILPLRGKILNVE+A K+ S+EI + A+G +G + ++ KLRYHK+I Sbjct: 419 NFQAILPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKVI 478 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561 IMTDADVDG+HI TL+LTFFFR+M SLI NG++Y+ PPLY +GK +Y E+ + Sbjct: 479 IMTDADVDGSHIATLILTFFFRRMRSLIENGYVYLATPPLYLCKKGKVEEYCWTEQQRQQ 538 Query: 562 YLINQSLSEEIELFC---DSKGVISKNDLRN 589 +++ E + G ++ + L + Sbjct: 539 FILKYGGGNENSIHTQRYKGLGEMNDHQLWD 569 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A+ +F E Q I ++ + + A EK + + I+ Sbjct: 424 LPLRGKILNVEKAMDHKIFESEEIQNIYRAMGVTVGTEDDPKALNMEKLRYHKV----II 479 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL----TILSLICNGD-KIKITG 718 + L + F R + IE Y+ L L G + Sbjct: 480 MTDADVDGSHIATLILTFFF-------RRMRSLIENGYVYLATPPLYLCKKGKVEEYCWT 532 Query: 719 PCSLLDTIFSIG---RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I G I QRYKGLGEMN QLW+TT+NP+ R+L ++ I +A++AD Sbjct: 533 EQQRQQFILKYGGGNENSIHTQRYKGLGEMNDHQLWDTTMNPENRTLKQITIDNAAEADQ 592 Query: 776 LFSRLMGDEVEPRREFIQENSLPSALD 802 +F+ LMG++V PRREFI+EN+ + +D Sbjct: 593 IFAMLMGEDVGPRREFIEENATYANID 619 >gi|319939072|ref|ZP_08013436.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV] gi|319812122|gb|EFW08388.1| DNA topoisomerase 4 subunit B [Streptococcus anginosus 1_2_62CV] Length = 649 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 273/649 (42%), Positives = 393/649 (60%), Gaps = 19/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT++ DGS TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDKIDVTIHKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y F G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYRQRFEKGGKPVTSLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL E +FL +V +SL D+R+ E + Y+ G++ FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTISERLNESAFLLKNVHLSLTDERTGES--VDFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G +++A+++NDGY +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEEGGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LED ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + ++ I I D + + + + +L Sbjct: 595 TMNPENRTLIRVTIDDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 643 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 55/73 (75%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+ + LMG Sbjct: 564 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIDDLARAERRVNVLMG 623 Query: 783 DEVEPRREFIQEN 795 D+V PRR++I++N Sbjct: 624 DKVPPRRKWIEDN 636 >gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262] gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262] Length = 646 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L++ + REG Y F G + + V G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IF+ F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV + LEDYL + + G ++ L + Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + S + L+ V + + + + I L Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547 Query: 708 ICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I +G +I+ + L D + S G S+QRYKGLGEMN QLW+TT+NP+ R+LL+V Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI++N+ LD+ Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646 >gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str. SLCC5334] Length = 646 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 289/597 (48%), Positives = 402/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVHESASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L++ + REG Y F G + + V G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEVQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IF+ F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV + LEDYL + + G ++ L + Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWD 594 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 7/219 (3%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + S + L+ V + + + + I L Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547 Query: 708 ICNGDKIK-ITGPCSLLDTIFSIGRK-GISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I +G +I+ + L D + S+ + S+QRYKGLGEMN QLW+TT+NP+ R+LL+V Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDKDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI+EN+ LD+ Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEENAQYVKNLDV 646 >gi|239626403|ref|ZP_04669434.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516549|gb|EEQ56415.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 639 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 259/622 (41%), Positives = 369/622 (59%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+ADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DNA+DE L GY + Sbjct: 1 MAKEQYNADSITVLEGLEAVRKRPGMYIGGV-GSKGLNHLIYEIVDNAVDEHLAGYCSSV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP +HK+ G+SAA ++++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVGMHKK-GLSAARIVLSTLHAGGKFDNDAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179 SVVNALS + +++ R+G IY + G L V G +TGT + FLP Sbjct: 119 SSVVNALSEHMDVKVYRDGYIYHDEYEKGKPIIKLENGLLPVVGKT-RETGTRINFLPDG 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF F + L+ RL E ++LN + I +KR+ E +IT GI A+V L+ Sbjct: 178 DIFEKTRFKAEWLKSRLHETAYLNPMLTICYENKRAGENEKITYHEPEGIIAYVKELNTG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + PI +G+ D I ++ A+++ D + EN+L F NNI ++GGTHL+G ++ T Sbjct: 238 KAAVH-DPIYFKGTVDRIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAL 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V++IK PDP F QTK K+ S++ V + Sbjct: 297 INSYARELGILKEKDTNFTGADTRNGMTAVVAIKHPDPIFEGQTKTKMASADATKAVFTV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 D L + + + K ++ ++ +R A +A+ K S GKLA+C Sbjct: 357 TGDELQLYFDRNVEVLKGVIACAEKSARIRRAEEKAKTNMLTKSKFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD K E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDADKCEIFIVEGDSAGGSAKTARNRRYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 G G + + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI Sbjct: 476 TFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE+ LE Y + ++ + + ++ +D Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPER 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKRVEIEDARMASEITEMLM 617 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 17/206 (8%) Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + + + N E V +++ +N + + + + + Sbjct: 441 RRYQAIL---PIRGKILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDITKLRYN 497 Query: 666 RIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPC 720 +I V + F + + I+ + + +I G++ + Sbjct: 498 KIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKRGEEQYLYDEK 557 Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L RK ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA A ++ Sbjct: 558 EL-----ERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPERRVLKRVEIEDARMASEI 612 Query: 777 FSRLMGDEVEPRREFIQENSLPSALD 802 LMG EV PRR FI E++ + +D Sbjct: 613 TEMLMGSEVAPRRTFIYEHADEAEID 638 >gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01] gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01] Length = 640 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 297/641 (46%), Positives = 416/641 (64%), Gaps = 6/641 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ G+ L G + TGT + F S+ Sbjct: 120 HGVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF+ ++YDTLQ R+REL+FLN + I+L D+R E + Y+GGI+++V ++ Sbjct: 179 IFTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQREDTYHYEGGIKSYVELMNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+P+ + PI I +D+I I++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPIHEEPIYIHQMKDDIEIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY KS K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR VV+ Sbjct: 299 VLNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDK 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 359 LFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P +SE+F+VEGDSAGGS K+GR QAILPLRGKILNVE++R D++L++ EI +I Sbjct: 419 SKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597 PPL+ +T+GK YV +++ L+ S + G ++ + L + Sbjct: 538 PPLFKLTQGKQKYYVFNDKELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNR 597 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L + + ++ V + ++ + L Sbjct: 598 MMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATL 638 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 32/287 (11%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + +++ + ++ ++ + + + + +++ I Sbjct: 358 KLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADC 417 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI---- 657 P+ + FI + +G E ++ LN + ++ + + Sbjct: 418 SSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQM 477 Query: 658 ---------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 DI R + V + F + I + + Sbjct: 478 ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTL 755 + L K + LD + S +S + RYKGLGEMNA QLWETT+ Sbjct: 538 PPLFKLTQGKQKYYVFNDKE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTM 592 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 NPD R +L+V++ DA +AD F LMGD VE RR+FI++N++ + LD Sbjct: 593 NPDNRMMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATLD 639 >gi|153855242|ref|ZP_01996408.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814] gi|149752241|gb|EDM62172.1| hypothetical protein DORLON_02422 [Dorea longicatena DSM 13814] Length = 678 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 257/621 (41%), Positives = 361/621 (58%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDA SI IL+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 41 KKNTYDAGSIAILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCSEIH 99 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS T++DNGRG+P DLH G+SAA V+ T LHAGGKF+ +YK SGGLHGVG Sbjct: 100 VTLEKDGSATIADNGRGVPVDLHA-TGVSAARVVYTTLHAGGKFDDSAYKTSGGLHGVGS 158 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ ++I R+G I+ + G L G TGT+V FLP Sbjct: 159 SVVNALSTYMDVQISRDGYIHHDRYEQGKPVIELEDGLLPTIGKT-RKTGTKVNFLPDDT 217 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + ++ RL E ++LN ++I DKR EP +I GI F+ L+ K Sbjct: 218 IFEKTKFKAEEVKSRLHETAYLNPDLKIVFEDKRGAEPEQIIYHEPDGILGFIRELNHKK 277 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G + I +++A ++ + +HENVL F NNI +GGTHL+G ++ T I Sbjct: 278 EVVH-DPVYFKGEAEGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTAI 336 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 337 NQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKACSKVT 396 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND + + + + K ++ A+ +R RA+ K S GKLA+C R Sbjct: 397 NDEIIRFFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCESR 455 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 456 DASKCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKVLANAEIKTMINA 515 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G +YI Sbjct: 516 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 575 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y ++ + + ++ ++ + Sbjct: 576 MPPLYKAMPKKGEEEYLYDDKALEKYRKTHDGPFTLQRYKGLGEMDAEQLWETTLNPETR 635 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + KL++ + E + Sbjct: 636 LLKLVEIEDARMASSVTEMLM 656 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 50/69 (72%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR L V+I DA A + LMG EV PRR FI E Sbjct: 610 TLQRYKGLGEMDAEQLWETTLNPETRLLKLVEIEDARMASSVTEMLMGSEVPPRRSFIYE 669 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 670 NATEAELDI 678 >gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J] gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J] Length = 650 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 284/625 (45%), Positives = 403/625 (64%), Gaps = 11/625 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M D +N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MIDENKNLEENVQEYDASQIQVLEGLEAVRMRPGMYIGSTSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFATHIEVFIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ + GNI+ F G++ + L + GS + TGT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGNIHFQEFKRGVVVDDLTIIGST-DLTGTTVHF 178 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ +FNYD L R++EL+FLN ++IS+ DKR + Y+GGI ++V Sbjct: 179 TPDPEIFTETVEFNYDKLAKRIQELAFLNRGLRISIADKRKGIEQNHDFHYEGGISSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 YL+ K ++++PI G D I++++AM++ GYHENV+ F NNI +GGTH G R+ Sbjct: 239 YLNEKKDVIIETPIYTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ +L E+P A+ IV K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEAFQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+ K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGSD-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + + + E SK + + +DD Sbjct: 538 YIAQPPIYGVKVGNEIKQYI--QPGINQETELQEALEKYSVGRSKPSVQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVIS 619 + + + ++ A + Sbjct: 596 QLWETTMDPENRLMARVTVDDAAEA 620 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 2/90 (2%) Query: 716 ITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L + + +GR S+QRYKGLGEM+ QLWETT++P+ R + RV + DA++A Sbjct: 561 INQETELQEALEKYSVGRSKPSVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D +F LMGD VEPRREFI+EN++ S LDI Sbjct: 621 DKVFDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera] Length = 707 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 264/597 (44%), Positives = 372/597 (62%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + +Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 59 ESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGST-GLRGLHHLVYEILDNAIDEAQAGFAS 117 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 + V L D S +++DNGRGIPT+LH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 118 KVDVVLLADDSVSITDNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGASSGYSVSGGL 177 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G Y+ + G L + + GT + F P Sbjct: 178 HGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWP 237 Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234 ++F+ F+Y+T+ R+REL+FLN + I+L + + + Y GG+ +V Sbjct: 238 DKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVR 297 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKP+ + D ISID+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 298 WLNTDKKPVHDVVG-FRKVADGISIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMK 356 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR + + +KS K+ ++ G+ REG T V+S+K+P+P F QTK +L + EVR Sbjct: 357 ASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 416 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VV+ V + L+ +LE HP +I+ K L+A AA+RAR+L R+K VL +SLPGK Sbjct: 417 KVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 476 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M S+E Sbjct: 477 LADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEE 536 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 537 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 596 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPL+ + RGK + Y D+ L+ + + G + L Sbjct: 597 IYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWE 653 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 127/335 (37%), Gaps = 33/335 (9%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 KII D + G H+R L ++P+ G P + + +++ + Sbjct: 371 KIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEY 430 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611 L +++ LS+ + + +L + + + + + D P + Sbjct: 431 LELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEI 490 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663 FI + +G + ++ LN + + + IL Sbjct: 491 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKG 550 Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710 K+ A + +L + + +F +Y+R + I + + Sbjct: 551 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERG 610 Query: 711 GDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 L ++ S+QR+KGLGEM QLWETT++P+ R L ++ + Sbjct: 611 KQVHYCYDDAELKQLQHSLPPNA--SYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVV 668 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA++A+ +FS LMG V+ R+E IQ+++ LD Sbjct: 669 EDAAEANVVFSSLMGARVDFRKELIQKSASTMKLD 703 >gi|225388933|ref|ZP_03758657.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme DSM 15981] gi|225044986|gb|EEG55232.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme DSM 15981] Length = 639 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 261/622 (41%), Positives = 380/622 (61%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N +Y+A+SI +L+GL+AV+KRP MYIG G GL+H+IYE++DNA+DE L G+ + Sbjct: 1 MANQTYNAESITVLEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIVDNAVDEHLAGFCSKV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP +LHK+ G+SA V++ LHAGGKF+ ++YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVELHKK-GVSAERVVLATLHAGGKFDNEAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179 SVVNALSS + +++ R+G IY ++ G+ PL V G +TGT++ FLP Sbjct: 119 SSVVNALSSHMDVKVYRDGCIYHDAYEKGLPVIPLENGLLPVIGKT-RETGTQINFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F D L+ RL E ++LN ++ I +KRS E +IT GI ++V L+ Sbjct: 178 EIFERTRFKADWLKSRLHETAYLNPNLMIFYANKRSGESEQITYHEPEGIVSYVKELNTG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + PI +G+ D + +++A+++ D + EN+L F NNI ++GGTHL+G ++ T Sbjct: 238 KTAVH-DPIYFKGTVDKVEVEVALQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAM 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V+++K PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDANFTGADTRNGMTAVVAVKHPDPIFEGQTKTKLASADATKAVFAV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D L + + + K ++ ++ +R A +A+ + S GKLA+C Sbjct: 357 VGDELQRYFDRNLEVLKGVIGCAEKSAKIRRAEEKAKTNMLTRSKFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD +K E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKTARNRMYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI Sbjct: 476 AFGCGFSEGYGNDFDITKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE+ LE Y + ++ + + + +D Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKELERYRRTHTGDFTLQRYKGLGEMDAGQLWETTLDPER 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 100/256 (39%), Gaps = 16/256 (6%) Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 E++ + L S + + FI + K + + Sbjct: 390 EKAKTNMLTRSKFSFDSNGKLANCESRDAEKCEIFIVEGDSAGGSAKTARNRMYQAIL-- 447 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIAR----GV 671 + + N E V +++ +N + + + + + +I V Sbjct: 448 PIRGKILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYNKIILMTDADV 507 Query: 672 QEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIG 730 + F + + I+ + + +I G++ + L Sbjct: 508 DGSHIDTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKKGEEQYLYDEKEL-----ERY 562 Query: 731 RK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 R+ ++QRYKGLGEM+A QLWETTL+P+ R L +V+I DA A ++ LMG EV Sbjct: 563 RRTHTGDFTLQRYKGLGEMDAGQLWETTLDPERRVLKQVEIEDARMASEITEMLMGSEVA 622 Query: 787 PRREFIQENSLPSALD 802 PRREFI E++ + +D Sbjct: 623 PRREFIYEHADEAEID 638 >gi|225441215|ref|XP_002266668.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 719 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 264/597 (44%), Positives = 372/597 (62%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + +Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 71 ESTSSKAYGSEQIQVLEGLDPVRKRPGMYIGST-GLRGLHHLVYEILDNAIDEAQAGFAS 129 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 + V L D S +++DNGRGIPT+LH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 130 KVDVVLLADDSVSITDNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGASSGYSVSGGL 189 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G Y+ + G L + + GT + F P Sbjct: 190 HGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSLTHRVLPTESTDLQGTHIRFWP 249 Query: 178 SSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234 ++F+ F+Y+T+ R+REL+FLN + I+L + + + Y GG+ +V Sbjct: 250 DKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKEDKDPEKNQYNEYCYAGGLVEYVR 309 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKP+ + D ISID+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 310 WLNTDKKPVHDVVG-FRKVADGISIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIDGMK 368 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR + + +KS K+ ++ G+ REG T V+S+K+P+P F QTK +L + EVR Sbjct: 369 ASLTRTLNNLGKKSKIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 428 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VV+ V + L+ +LE HP +I+ K L+A AA+RAR+L R+K VL +SLPGK Sbjct: 429 KVVDQTVQEFLTEYLELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 488 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M S+E Sbjct: 489 LADCSSTNPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEE 548 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 549 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 608 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPL+ + RGK + Y D+ L+ + + G + L Sbjct: 609 IYVGVPPLFKVERGKQVHYCYDDAELKQLQHSLPPNASYSIQRFKGLGEMMPVQLWE 665 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 127/335 (37%), Gaps = 33/335 (9%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 KII D + G H+R L ++P+ G P + + +++ + Sbjct: 383 KIIKEKDITLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQTVQEFLTEY 442 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKT 611 L +++ LS+ + + +L + + + + + D P + Sbjct: 443 LELHPDVLDLILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESEI 502 Query: 612 FIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL-------- 663 FI + +G + ++ LN + + + IL Sbjct: 503 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKSEEIQNLILGLGLGVKG 562 Query: 664 --VKRIARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICN 710 K+ A + +L + + +F +Y+R + I + + Sbjct: 563 EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLFKVERG 622 Query: 711 GDKIKITG---PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 L ++ S+QR+KGLGEM QLWETT++P+ R L ++ + Sbjct: 623 KQVHYCYDDAELKQLQHSLPPNA--SYSIQRFKGLGEMMPVQLWETTMDPERRLLKQLVV 680 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA++A+ +FS LMG V+ R+E IQ+++ LD Sbjct: 681 EDAAEANVVFSSLMGARVDFRKELIQKSASTMKLD 715 >gi|284051687|ref|ZP_06381897.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca] gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39] Length = 645 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 296/646 (45%), Positives = 408/646 (63%), Gaps = 15/646 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 2 TSTYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S V+D+GRGIP D H + G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINPDNSVRVTDDGRGIPIDTHSKTGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+++ + R+ Y + G+ L S + TGT V F P + IF+ Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTELEEHSSKESQTGTSVCFKPDTKIFTTGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F YDT+ RLREL++LN+ V+I+L D R E + + Y+GGI+ +V+Y++R K Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + I + G R+N+ +++A++W D Y + +L F NNI DGGTHL GL++ LTR Sbjct: 241 QALHEDTIYVSGERNNVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K ++ ++ G++ REG T V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 MNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +L+ +P A I++K + A +AARRARDL RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP++SE+FLVEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LIT Sbjct: 421 RDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI + FD ++LRYHK+IIMTDADVDGAHIRTLLLTFF+R L+ GF+YI P Sbjct: 481 ALGLGIKGEEFDSSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVAQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + RG++ Y +E+ L+ L + G + N L + ++ Sbjct: 541 PLYKVERGRNHYYCYNEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + E I V + A RL+ Sbjct: 596 PETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQ-FIEDHAPRLDI 640 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 57/70 (81%), Gaps = 2/70 (2%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QR+KGLGEM +QLW+TT+NP+TRS+ RV+I DA++AD +F+ LMGD V PRR+FI+ Sbjct: 573 YTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQFIE 632 Query: 794 ENSLPSALDI 803 +++ LDI Sbjct: 633 DHAPR--LDI 640 >gi|15614703|ref|NP_243006.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125] gi|10174759|dbj|BAB05859.1| DNA topoisomerase IV subunit B [Bacillus halodurans C-125] Length = 655 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 266/660 (40%), Positives = 391/660 (59%), Gaps = 22/660 (3%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I VT++ Sbjct: 9 YNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGYGSNINVTIH 67 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S +V D GRG+PT +H + G EVI+T LHAGGKF Q Y SGGLHGVG SVVN Sbjct: 68 KDQSVSVRDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGASVVN 126 Query: 130 ALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 ALS WL + IKR+G +YE F N G L G TGT + F P +FS +FN Sbjct: 127 ALSEWLIVEIKRDGWVYEQRFENGGKPSTTLEKKGKT-RQTGTTIHFKPDPTVFSTTNFN 185 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 +TL RLRE +FL ++I L+D R + + Y+ GI+AFV YL+ K+ L + Sbjct: 186 VETLSERLREAAFLLKGLKIELVDLR--DDTKEVFHYEDGIKAFVEYLNEDKETLHP-VV 242 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 G + I I+ A ++NDGY ENVL F NN+ KDGGTH G ++A+TR + Y K+ Sbjct: 243 FFNGESNGIEIEFAFQFNDGYTENVLSFVNNVRTKDGGTHELGAKTAMTRAVNEYARKAK 302 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K+ +++ G D REGFT+++S+++P+ +F QTK KL + E RS V+S V++ LS Sbjct: 303 LLKEKDKNLDGSDIREGFTALISVRVPEEKLQFEGQTKGKLGTPEARSAVDSLVSEKLSF 362 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKK 424 + EE+P + ++++K + A+ R+AAR+AR+ + +K L GKL ++P++ Sbjct: 363 FFEENPEMSSMLIRKAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTPAQSKNPQR 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ D ++ ++EI T+I +G G Sbjct: 423 NELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRTIIHTIGAG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 +G D F ++ + Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G +YI PPLY + Sbjct: 483 VGAD-FTLDDVNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKV 541 Query: 545 TR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 ++ + ++Y DE+ L+ + I+ + G ++ L +D Sbjct: 542 SKGSGAKEVVEYAWDEDGLKKAIKKVGRGYTIQRY-KGLGEMNATQLWET-----TMDPE 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + + + + S +A L E + Sbjct: 596 TRTLIRVRIDDAARAEKRVSTLMGDKVEPRRKWIESHVAFGLEEETNILENENLAVVEEE 655 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + E ++ ++ L SKN RN + Sbjct: 377 KAIKAAQAREAARKAREEARSGKKNRRRDVLLSGKLTPAQSKNPQRNELYLVEGDSAGGS 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + ++ ++ ++ I + N D Sbjct: 437 AKQGRDRKFQAVLPLRGKVINTEKAKIDDIMKNEEIRTIIHTIGAGVGADFTLDDVNYDK 496 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----G 718 +V + F + + + ++ + + ++ Sbjct: 497 VVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKVSKGSGAKEVVEYAWD 556 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L I +GR G ++QRYKGLGEMNA+QLWETT++P+TR+L+RV+I DA++A+ S Sbjct: 557 EDGLKKAIKKVGR-GYTIQRYKGLGEMNATQLWETTMDPETRTLIRVRIDDAARAEKRVS 615 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I+ + Sbjct: 616 TLMGDKVEPRRKWIESH 632 >gi|312867767|ref|ZP_07727973.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405] gi|311096830|gb|EFQ55068.1| DNA topoisomerase IV, B subunit [Streptococcus parasanguinis F0405] Length = 649 Score = 571 bits (1473), Expect = e-160, Method: Composition-based stats. Identities = 273/649 (42%), Positives = 392/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I VT+N DGS +V D GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGSQIDVTINKDGSLSVEDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F + G L GSA TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ R++E +FL V ++L D R E ++ Y+ G++ FV YL+ Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVSFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L G D +++AM++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ + I I D + + + + + +L Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ ++ + I + N D ++ + Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + + + + G K ++ S L+ + +G ++Q Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638 >gi|322389469|ref|ZP_08063021.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus parasanguinis ATCC 903] gi|321143847|gb|EFX39273.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus parasanguinis ATCC 903] Length = 649 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 273/649 (42%), Positives = 391/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I VT+N DGS +V D GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGSQIDVTINKDGSLSVEDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F + G L GSA TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGSAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ R++E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L G D +++AM++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ + I I D + + + + + +L Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ ++ + I + N D ++ + Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + + + + G K ++ S L+ + +G ++Q Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638 >gi|196250913|ref|ZP_03149597.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16] gi|196209554|gb|EDY04329.1| DNA topoisomerase IV, B subunit [Geobacillus sp. G11MC16] Length = 645 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 263/601 (43%), Positives = 377/601 (62%), Gaps = 17/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKRTV-YEYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S TV D GRG+P +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GNYILVQIHKDNSVTVLDEGRGMPVGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IY F N G L G N TGT + F P Sbjct: 118 HGVGASVVNALSEWLVVTIHRDGFIYRQRFENGGKPVTTLENIG-TTNKTGTIIQFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y+TL RLRE +FL ++I L+D+R+ Y+ GIEAFV+YL+ Sbjct: 177 TIFSTTVFDYETLSERLRESAFLLKGLKIELVDERTG--MREVFHYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L G ++ I ++ A +++DGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 235 KDVLHPVA-YFAGEQNGIEVEFAFQFHDGYSENVLSFVNNVRTKDGGTHEAGAKTAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARRVGLLKEKDKNLEGTDIREGMSAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +L+E+P + +++KK + A R+AAR+AR+ + +K A L GKL Sbjct: 354 AVVSEQLTYFLQENPDVSAMLIKKAIRAYQAREAARKAREEARSGKKRKGKEALLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ +L ++EI Sbjct: 414 PAQGRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLGDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIHAIGGGVGAD-FSIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY I+ + ++++Y +E L + I+ + + + + Sbjct: 533 IALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQRYKGLGEMNADQLWETTM 592 Query: 592 D 592 + Sbjct: 593 N 593 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 455 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737 F + I + ++ + + K + + + I +K G ++Q Sbjct: 515 LTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQ 574 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ + Sbjct: 575 RYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 632 >gi|1226021|emb|CAA58884.1| DNA gyrase [Mycobacterium smegmatis] Length = 675 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 274/678 (40%), Positives = 386/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ N Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKNNAPKEYGADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V ++ DGS V D+GRGIP ++H G+ +V+MT+LHAGGKF+ ++Y VSG Sbjct: 60 GFATRVDVKIHADGSVEVRDDGRGIPVEMHA-TGMPTIDVVMTQLHAGGKFDGETYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L+ + R+G + + + L G +TGT + F Sbjct: 119 GLHGVGVSVVNALSTRLEATVLRDGYEWFQYYDRSVP-GKLKQ-GRETKETGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF D+N++T+ RL+E++FLN + I L D+R Sbjct: 177 PEIFETTDYNFETVARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVKDTAEAPKTADEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ +V +++R K P+ QS I G +++AM+WN G Sbjct: 237 AAEATGPSKVKHRVFHYPGGLVDYVKHINRTKTPIQQSIIDFDGKGPGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNRYAKDKKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W E +P EAK +V K + ++ Sbjct: 357 VISVKVAEPQFEGQTKTKLGNTEVKSFVQKICNEQLQHWFEANPAEAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ ++ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQSIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + +S ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSEPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKKINVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKK-INVDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|325265438|ref|ZP_08132161.1| DNA gyrase, B subunit [Clostridium sp. D5] gi|324029296|gb|EGB90588.1| DNA gyrase, B subunit [Clostridium sp. D5] Length = 645 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 293/585 (50%), Positives = 394/585 (67%), Gaps = 4/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 9 DAEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALAGYCDTIFV 67 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++N S TV DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 68 SINKGNSITVIDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G + + L V G ++ +GT+VTF P +IF Sbjct: 128 VVNALSQWLEVEIYNEGKIYKQRYERGKVVDKLRVVGECEDEKSGTKVTFFPDDEIFEET 187 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+YDTL+ R RE++FL ++I L D+R E E Y+GGI+ FV+YL+R K L + Sbjct: 188 VFDYDTLKQRFREMAFLTKGLKIVLRDERGEELVEKVFHYEGGIKEFVTYLNRSKTALYE 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +DN+++++AM+ ND Y +N F NNI +GGTH+ G R+ALT+ Y Sbjct: 248 QIIYCEGMKDNVAVEVAMQHNDSYSDNTYGFVNNITTPEGGTHVVGFRNALTKTFNDYAR 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ V+ L Sbjct: 308 KNKLLKDSEPNLSGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVSTQLE 367 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+ V+K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DPK Sbjct: 368 IFLEQNPNVAKMTVEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPKNC 427 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ ++ EI +ITA GTGI Sbjct: 428 EIYIVEGDSAGGSAKTARDRSTQAILPLRGKILNVEKARLDKIYANAEIKAMITAFGTGI 487 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D F+I KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI +G++Y+ +PPLY + Sbjct: 488 -HDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQPPLYKLE 546 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y +E L L G + L Sbjct: 547 KNKKVWYAYSDEELSQILSEVGRDGNNKIQRYKGLGEMDAEQLWE 591 Score = 160 bits (405), Expect = 1e-36, Method: Composition-based stats. Identities = 55/161 (34%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G ++ +I R + + ++G+ I + + R + I++ Y+ + Sbjct: 485 TGIHDDFEITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKDGYVYLAQPPLYK 544 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR G + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 545 LEKNKKVWYAYSDEELSQILSEVGRDGNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 604 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 605 TMDEETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 645 >gi|332877012|ref|ZP_08444765.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685120|gb|EGJ57964.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 657 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 285/608 (46%), Positives = 390/608 (64%), Gaps = 21/608 (3%) Query: 1 MSDNIQNS----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ + N Y AD+IQ L+G++ V+ RPSMYIGD G GLHH++YEVLDN+IDE+ Sbjct: 1 MAEEVYNEQNTADYSADNIQSLEGMEHVRMRPSMYIGDV-GVRGLHHLVYEVLDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY D+I VT+N D S TV DNGRGIP D+HK+EG+SA +V+MT++ AGGKF++ SYKV Sbjct: 60 LAGYCDMIAVTINEDNSITVEDNGRGIPVDIHKKEGVSALQVVMTKIGAGGKFDKGSYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVS VNALS+ L + R+G I++ + G+ P+ G + GT+VTFL Sbjct: 120 SGGLHGVGVSCVNALSNHLTATVYRDGKIWQQEYERGVALYPVKQLGDT-DKRGTKVTFL 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPE----PREITMFYKGGIEA 231 P IF F YDTL R+REL++LN + ++L D R+ + + G+ Sbjct: 179 PDDTIFEQTTEFKYDTLAARIRELAYLNKGITVTLTDLRNKDEKGNYIHEKFHSEKGLTE 238 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV YLD ++ P++ I ++G ++ I +++AM +ND Y EN+ + NNI +GGTHL G Sbjct: 239 FVKYLDGNRIPIIGGVIAMEGEKNGIPVEVAMTYNDSYTENLHSYVNNINTSEGGTHLQG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVI------GDDCREGFTSVLSIKMPDPRFSSQTKE 345 R LTR + +Y +KS +K + GDD REG T+V+S+K+ +P+F QTK Sbjct: 299 FRMGLTRTLKAYADKSGLLEKMSKDKKNPVEIEGDDFREGLTAVISVKVAEPQFEGQTKT 358 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL + EV S V V L +LEE+P +AK IV+KV+ A+ R AAR+AR++ +RK V+ Sbjct: 359 KLGNREVTSAVSQAVGQMLEDYLEENPNDAKTIVEKVILAAQARQAARKAREMVQRKSVM 418 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 LPGKLADCSE DPKK ELFLVEGDSAGG+AKQGR+++ QAILPLRGKILNVE+A Sbjct: 419 SGGGLPGKLADCSEEDPKKCELFLVEGDSAGGTAKQGRNKDIQAILPLRGKILNVEKAMQ 478 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 K+ S EI + TALG +G + +KLRYHK+IIM DADVDG+HI TL+LTFF Sbjct: 479 HKVFDSDEIKNIYTALGVSVGTEEDAKALNLSKLRYHKVIIMCDADVDGSHITTLILTFF 538 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FR M LI N +YI PPLY + S + + ++ + G Sbjct: 539 FRYMRELIENEHVYIATPPLYLVKSKTSKRQEYAWSDKQRDALSAEMGNVTIQRYKGLGE 598 Query: 582 ISKNDLRN 589 ++ + L + Sbjct: 599 MNDHQLWD 606 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEMN QLW+TT++P R+L +V I +AS+AD +FS LMGDEV PRREFI+ Sbjct: 588 VTIQRYKGLGEMNDHQLWDTTMDPAHRTLRKVTIDNASEADRVFSMLMGDEVPPRREFIE 647 Query: 794 ENSLPSALD 802 +N+ + +D Sbjct: 648 KNAKYAKID 656 >gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656] gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656] gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629] gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1] Length = 645 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 301/650 (46%), Positives = 409/650 (62%), Gaps = 20/650 (3%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS IQ N Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L Sbjct: 1 MSKEIQQNNQEYGADQIQILEGLEAVRKRPGMYIGSTSS-RGLHHLVYEIVDNAVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I VT+ D S TV D+GRGIP + + SA EV+ T LHAGGKF YKVSG Sbjct: 60 GYCKNIEVTIEEDNSITVQDDGRGIPVGTNHKAKKSALEVVFTVLHAGGKFGGGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLP 177 GLHGVG SVVNALS+WL + + ++GNIY S+ G D+ + + G GT+V FLP Sbjct: 120 GLHGVGASVVNALSTWLTVEVYKDGNIYRQSYKRGKTDDTVKIVGQCDESLHGTKVHFLP 179 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 +IF ++YDTL+ RLRE +FL ++I+L D R Y+GGI+ FV YL+ Sbjct: 180 DPEIFEETVYDYDTLKQRLRETAFLTKGLKITLKDVRENSHHNHVFHYEGGIKEFVEYLN 239 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K+ L I +G+++ + +++A++ ND ++++ F NN+ +GGTHL+G R+ALT Sbjct: 240 RGKEALYDEVIYCEGTQNGVYVEVALQHNDSFNDSTFSFVNNVITPEGGTHLAGFRNALT 299 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + +Y + K ++ GDD REG T+++SIK+ +P+F QTK+KL +SE R V+ Sbjct: 300 KTFNAYAREKKILKDSDPALTGDDIREGLTAIISIKIEEPQFEGQTKQKLGNSEARGAVD 359 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + V++ L+ +LE++P AK I +K L A R+AAR+ARDLTRRK LD +LPGKLADC Sbjct: 360 AVVSEKLTYFLEQNPDVAKNICEKSLLAQRAREAARKARDLTRRKTSLDGGTLPGKLADC 419 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S++DPK E+F+VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++ + EI + Sbjct: 420 SDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARLDRIYDNAEIRAM 479 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA GTGI +D FDI KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ Sbjct: 480 ITAFGTGIHED-FDITKLRYDKIIIMTDADVDGAHIATLMLTFLYRFMPDLIKEGHVYLA 538 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDALK 596 PPLY + + K + Y D++ L+ L + G + + L D Sbjct: 539 TPPLYKVEKNKGVWYAYDDDELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMD--- 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 D ++Q +I G + E D + K+ R FI Sbjct: 596 -----------PDHRILKQVMIDGENSSELDVTFTTLMGDKVEPRKEFIE 634 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Query: 717 TGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQA 773 L + IGR + +QRYKGLGEM+A QLWETT++PD R L +V I ++S+ Sbjct: 555 YDDDELKQILNDIGRDNNNKIQRYKGLGEMDADQLWETTMDPDHRILKQVMIDGENSSEL 614 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D F+ LMGD+VEPR+EFI+ N+ LDI Sbjct: 615 DVTFTTLMGDKVEPRKEFIEANAKYVTNLDI 645 >gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e] gi|46906230|ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858] gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498301|ref|ZP_03666650.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1988] gi|224503071|ref|ZP_03671378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-561] gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes Clip81459] gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194] gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254830702|ref|ZP_05235357.1| DNA gyrase subunit B [Listeria monocytogenes 10403S] gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503] gi|254899680|ref|ZP_05259604.1| DNA gyrase subunit B [Listeria monocytogenes J0161] gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818] gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262] gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900] gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064] gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175] gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578] gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923] gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017] gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes] gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e] gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858] gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503] gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900] gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578] gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923] gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262] gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818] gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194] gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017] gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes 1816] gi|332310339|gb|EGJ23434.1| DNA gyrase subunit B [Listeria monocytogenes str. Scott A] Length = 646 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 288/597 (48%), Positives = 401/597 (67%), Gaps = 11/597 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS+ L++ + REG Y F G + + G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IF+ F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+ TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M L+ G+ Sbjct: 479 IRTIFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGY 537 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I GK ++YV + LEDYL + + G ++ L + Sbjct: 538 IYIAQPPLYQIKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWD 594 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 7/219 (3%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ + + QA++ + N E + + ++ + Sbjct: 429 ISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGT 488 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + S + L+ V + + + + I L Sbjct: 489 GFGGDFDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPLLDAGYIY-IAQPPLYQ 547 Query: 708 ICNGDKIK-ITGPCSLLDTIFS-IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I +G +I+ + L D + S G S+QRYKGLGEMN QLW+TT+NP+ R+LL+V Sbjct: 548 IKHGKQIEYVYSDGQLEDYLASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQV 607 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 I DA AD+ F LMGD VEPRR+FI++N+ LD+ Sbjct: 608 NIKDAIDADETFEMLMGDRVEPRRKFIEDNAQYVKNLDV 646 >gi|321311453|ref|YP_004203740.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5] gi|291484420|dbj|BAI85495.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. natto BEST195] gi|320017727|gb|ADV92713.1| DNA topoisomerase IV subunit B [Bacillus subtilis BSn5] Length = 655 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ Sbjct: 1 MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G +Y+ F N G L G TGT F P Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS +N++TL RLRE +FL ++I LID+R+ + +Y+ GIEAFV+ Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERND--QHEVFYYENGIEAFVA-YLNE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +K ++ + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 234 EKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 354 AIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI +G ++ Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + + +Y + ++ I + ++ Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQ 586 Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + + I+ A + + + +A L+ + E Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646 Query: 652 S 652 Sbjct: 647 E 647 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + E + E L S+N +N + Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + V N E + ++ ++ ++ I + N D Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718 ++ + F + I ++ + + K +I Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + D + +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ + + Sbjct: 557 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 615 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I++N Sbjct: 616 TLMGDKVEPRRKWIEKN 632 >gi|319653142|ref|ZP_08007244.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] gi|317395063|gb|EFV75799.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2] Length = 660 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 274/670 (40%), Positives = 395/670 (58%), Gaps = 22/670 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MARNQEAFDYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNAVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V D GRG+PT +H G EVI+T LHAGGKF Q YK SGGL Sbjct: 60 GDHIIVKIHKDNSISVQDKGRGMPTGMH-RMGKPTPEVILTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL ++IKR+G +YE F G L G N +GT + F P Sbjct: 119 HGVGASVVNALSEWLVVKIKRDGFVYEQRFELGGKPVTTLEKVGKT-NQSGTTIHFKPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +NY+TL RLRE +FL ++I +ID+R+ Y+ GIEAFV YL+ Sbjct: 178 SIFSTTTYNYETLCERLRESAFLLKGMKIEIIDERND--FHDVFHYENGIEAFVEYLNEE 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G + I +D A ++NDGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 236 KDILHP-VVSFEGESNGIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REGFT+++S+++P+ +F QTK KL +SE RS V+ Sbjct: 295 FNEYARKVNLLKEKDKNLDGADLREGFTAIVSVRVPEELLQFEGQTKGKLGTSEARSAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V++ LS +LEE+P + +++KK + A R+AAR+AR+ + +K A L GKL Sbjct: 355 SVVSEHLSYFLEENPETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+++EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 415 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIN 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M L+ G ++ Sbjct: 475 TIIHAVGAGVGSD-FNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVF 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y ++ L+D I + + G ++ + L Sbjct: 534 IALPPLYKVSKGSGKKEVIEYAWSDDDLQD-TIKKVGKGYMLQRYKGLGEMNADQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + S +A L E Sbjct: 592 ----TMDPESRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIESNVAFGLEEDGSILEN 647 Query: 652 SWHGSINNSD 661 + Sbjct: 648 ENISVLEEEG 657 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + I + ++ + S + ++ + Sbjct: 370 ETSSLLIKKAIKAFQAREAARKAREEARSGKKRKKSEAMLSGKLTPAQSRNPQRNELYLV 429 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QAV+ V N E + ++ ++ ++ + ++ Sbjct: 430 EGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEINTIIHAVGAGVGSDFN 489 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D ++ + F + + + ++ + + K Sbjct: 490 LEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVFIALPPLYKVSKGSGKK 549 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L DTI +G KG +QRYKGLGEMNA QLWETT++P++R+L+RVKI DA Sbjct: 550 EVIEYAWSDDDLQDTIKKVG-KGYMLQRYKGLGEMNADQLWETTMDPESRTLIRVKIDDA 608 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+ N Sbjct: 609 ARAERRVTTLMGDKVEPRRKWIESN 633 >gi|226303498|ref|YP_002763456.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4] gi|229491178|ref|ZP_04385006.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121] gi|226182613|dbj|BAH30717.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4] gi|229321916|gb|EEN87709.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121] Length = 678 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 259/613 (42%), Positives = 372/613 (60%), Gaps = 36/613 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y+A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A Sbjct: 8 TSTSSKDYNASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + VTL DG V D+GRGIP +H G+ EV++T+LHAGGKF+ SY VSGGLHG Sbjct: 67 KVEVTLLEDGGIRVIDDGRGIPVGMHAS-GVPTVEVVLTQLHAGGKFDSDSYAVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS+ L + IK +G ++ ++ + L V G +TGT V+F +IF Sbjct: 126 VGISVVNALSTRLDVDIKVDGYRWQQTYTDSKP-GEL-VQGDPTKETGTTVSFWADPEIF 183 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216 +N++T+ RL+E++FLN + I+L D+R+ Sbjct: 184 ETTRYNFETVARRLQEMAFLNKGLTITLTDERAEVIDDEAAEVAEAPKSAAEEAEEAAQA 243 Query: 217 ---EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273 + + Y GG+E +V ++++ K P+ S + +++AM+WN GY E+V Sbjct: 244 APRKSKTRIYHYPGGLEDYVRHINKSKTPIHNSVVGFTAKGTGHELEVAMQWNSGYSESV 303 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 F N I +GGTH G R+ALT + Y + K + GDD REG +++S+K Sbjct: 304 HTFANTINTHEGGTHEEGFRAALTATVNKYALEKKLLKDKDPKLTGDDIREGLAAIISVK 363 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 + +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK IV K + ++ R AAR Sbjct: 364 VGEPQFEGQTKTKLGNTEVKSFVQKACNEHLAHWFEANPADAKTIVNKAVSSAQARVAAR 423 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR+L RRK D+ LPGKLADC DP+KSE+++VEGDSAGGSAK GR QAILPL Sbjct: 424 KARELVRRKSATDLGGLPGKLADCRSNDPEKSEIYIVEGDSAGGSAKSGRDSMYQAILPL 483 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 RGKI+NVE+AR D++L + E+ ++ITA GTGI D FDI KLRYHKI++M DADVDG HI Sbjct: 484 RGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQHI 542 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEE 571 TLLLT FR M L+ +G +Y+ +PPLY +G ++ + + + S + Sbjct: 543 ATLLLTLLFRFMRPLVEHGKVYLAQPPLYKLKWQKGAQPEFAYSDRERDAMVKAGLESGK 602 Query: 572 IELFCDSKGVISK 584 D Sbjct: 603 KINKDDGIQRYKG 615 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 G+K I+ +QRYKGLGEMNA +LWETT++P R L V + DA+ AD+LFS LMG Sbjct: 598 LESGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLRLVTLDDAAAADELFSVLMG 656 Query: 783 DEVEPRREFIQENSLPSA-LDI 803 ++VE RR FI N+ LD+ Sbjct: 657 EDVEARRSFITRNARDVRFLDV 678 >gi|306825577|ref|ZP_07458916.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431938|gb|EFM34915.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 648 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 281/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVLIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +R+ + G IY + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIYYQEYHRGNVVADLEVIGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGANQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGANQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|296331026|ref|ZP_06873501.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674543|ref|YP_003866215.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii str. W23] gi|296152031|gb|EFG92905.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412787|gb|ADM37906.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. spizizenii str. W23] Length = 655 Score = 571 bits (1472), Expect = e-160, Method: Composition-based stats. Identities = 269/661 (40%), Positives = 395/661 (59%), Gaps = 23/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G +Y+ F N G L G TGT F P Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS +N++TL RLRE +FL ++I LID+R+ ++ +Y+ GIEAFV+ Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERND--QQEIFYYENGIEAFVA-YLNE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +K + + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 234 EKDALSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 354 AVVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI +G ++ Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E ++D L I+ + G ++ + L Sbjct: 533 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET- 590 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 ++ + + + + +A L+ + E Sbjct: 591 ----TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646 Query: 652 S 652 Sbjct: 647 E 647 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 3/256 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + E + E L S+N +N + Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + V N E + ++ ++ ++ I + N D Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGP 719 ++ + F + I ++ + + K +I Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ + + Sbjct: 557 DEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVTT 616 Query: 780 LMGDEVEPRREFIQEN 795 LMGD+VEPRR++I++N Sbjct: 617 LMGDKVEPRRKWIEKN 632 >gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG] gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705] gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG] gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705] gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG] Length = 653 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 281/630 (44%), Positives = 406/630 (64%), Gaps = 10/630 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A I V +N Sbjct: 19 YDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATRIEVEVN 77 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGVG SVVN Sbjct: 78 PDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 137 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFN 188 ALS+ L + + R G Y + F+ G ++ P+ G A ++ GT+V F P DIF+ Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197 Query: 189 YDTLQ-HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 D + R+REL+FLN ++++ DKR+ ++ Y+GG++++V +L + K+ L+Q P Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I ++G I++++A+++ + YH +L F NNI +GGTH +G ++ALTR I Y +S Sbjct: 258 IYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRS 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K + GDD REG T+V+S+K PDP+F QTK KL +S+ R+VV+ +D + + Sbjct: 318 GALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKF 377 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L EHP + K+I+ K + AS R AA+RAR++TR+K L+I++LPGKLAD + +DP+ SEL Sbjct: 378 LMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISEL 437 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +++L+++EI TL TA+GTG G Sbjct: 438 FIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGFG- 496 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+K RYHK+IIMTDADVDGAHIRTLLLT +R M ++ G++YI +PPLY + +G Sbjct: 497 QDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQG 556 Query: 548 KSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K ++Y+ +E L+D L S + G + + L +D + Sbjct: 557 KMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET-----TMDPDTRRLLR 611 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLAS 636 K + I + + + + Sbjct: 612 VSPKDAEQADGIFEMLMGDHVEPRRKFIEE 641 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 3/71 (4%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ASQLWETT++PDTR LLRV DA QAD +F LMGD VEPRR+FI+EN Sbjct: 583 IQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEEN 642 Query: 796 SLPS---ALDI 803 ++ +D+ Sbjct: 643 AVFVDPNNIDV 653 >gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328] gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328] Length = 645 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 295/646 (45%), Positives = 407/646 (63%), Gaps = 15/646 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 2 TSTYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S V+D+GRGIP D H + G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 EINPDNSVRVTDDGRGIPIDTHSKTGRSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+++ + R+ Y + G+ + S TGT V F P + IF+ Sbjct: 121 VVNALSEWVEVTVLRDHKRYVQRYERGVPVTEVKEHSSKETQTGTSVCFKPDTKIFTTGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F YDT+ RLREL++LN+ V+I+L D R E + + Y+GGI+ +V+Y++R K Sbjct: 181 EFEYDTIASRLRELAYLNAGVRITLTDNRLELLKREEAKVESYCYEGGIKEYVTYMNREK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + I + G R+N+ +++A++W D Y + +L F NNI DGGTHL GL++ LTR Sbjct: 241 QALHEDTIYVSGERNNVQVEVALQWCVDAYSDTILGFANNIRTVDGGTHLEGLKTVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K ++ ++ G++ REG T V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 MNAIARKRNKIKDNEPNLGGENVREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +L+ +P A I++K + A +AARRARDL RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEFLDFNPNVADAILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP++SE+FLVEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LIT Sbjct: 421 RDPEESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI + FD ++LRYHK+IIMTDADVDGAHIRTLLLTFF+R L+ GF+YI P Sbjct: 481 ALGLGIKGEEFDPSQLRYHKVIIMTDADVDGAHIRTLLLTFFYRYQRELVDQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + RG++ Y +E+ L+ L + G + N L + ++ Sbjct: 541 PLYKVERGRNHYYCYNEQQLQQQLAEFPDNANYTIQRFKGLGEMMPNQLWDT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + E I V + A RL+ Sbjct: 596 PETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQ-FIEDHAPRLDI 640 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 39/70 (55%), Positives = 57/70 (81%), Gaps = 2/70 (2%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QR+KGLGEM +QLW+TT+NP+TRS+ RV+I DA++AD +F+ LMGD V PRR+FI+ Sbjct: 573 YTIQRFKGLGEMMPNQLWDTTMNPETRSIKRVEIEDAAEADHIFTVLMGDRVAPRRQFIE 632 Query: 794 ENSLPSALDI 803 +++ LDI Sbjct: 633 DHAPR--LDI 640 >gi|282896629|ref|ZP_06304644.1| DNA gyrase, B subunit [Raphidiopsis brookii D9] gi|281198499|gb|EFA73385.1| DNA gyrase, B subunit [Raphidiopsis brookii D9] Length = 798 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 288/812 (35%), Positives = 426/812 (52%), Gaps = 30/812 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY + V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHVDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN DGSCTV+D+GRGIPTD+H + G SA E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 61 ELNADGSCTVTDDGRGIPTDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS + + + RE ++ + G L V + TGT V F P + IF+ Sbjct: 121 VVNALSEVVDITVWREHKVHTQRYERGAPTTELQVEPDQQSRTGTSVKFKPDAQIFTTGT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+IS D R + P+ T YKGGI+ +VSY++R K Sbjct: 181 EFDYITLAGRLRELAYLNAGVKISFTDHRLELLKTDTPKVETYEYKGGIKEYVSYINRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + I +QG R+N+ +++A++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QALHEEIIYVQGERNNVQVEVALQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKTVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + S K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNSIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGG + L L E+A + T+ Sbjct: 421 RDPAESEIFIVEGDSAGGCFVGNTLVSLKDGRNLTFTDLIAEQAAGKENY----CYTIRE 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII-- 537 GI + +++ +T +D + F ++ +G Sbjct: 477 NGEVGIEKILHVRRTKTNAEVVRVT---LDNDQVLICTPDHLF-----MLRDGNYQAAGL 528 Query: 538 -KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 P + ++ Y E + D + + + + Sbjct: 529 LTPQDSLMPYYDQSIPTVIRSAVTTYNHRVVSVESLPEKFDVYDLEVPHTHNFALAAGVF 588 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE-KSWHG 655 + K + + + + N E + + +++ + + + + + + Sbjct: 589 VHNSAKQGRDRRTQAIL--PLRGKILNIEKTDDAKIYKNNEVQSLITALGLGVKGEEFDA 646 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 S +V V + F + + I I + + + Sbjct: 647 SQLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACPPLYKVERGKNYNY 706 Query: 716 ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L I ++ G ++QR+KGLGEM QLW TT+NP+TR+L +V+I DA++AD Sbjct: 707 CYSDRELQQHISTLPGNANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKQVEIEDAAEAD 766 Query: 775 DLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 +F+ LMGD V PRREFI+ LDI Sbjct: 767 RIFTILMGDRVAPRREFIETYGSKLNLTDLDI 798 >gi|206895598|ref|YP_002246982.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738215|gb|ACI17293.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265] Length = 637 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 248/593 (41%), Positives = 369/593 (62%), Gaps = 12/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +++ +Y A+ I++L L+ V+KRP+MYIG TD +GLHH+I+E++DNAIDE++ G+ Sbjct: 1 MEKSLKTKNYGAEQIKVLGDLEGVRKRPAMYIGSTDK-NGLHHLIWEIVDNAIDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V L DGS V DNGRGIP ++H +EG EV++T+LHAGGKF ++YK SGGL Sbjct: 60 CDHIKVVLYKDGSVLVEDNGRGIPVEIHPQEGRPTVEVVLTKLHAGGKFGGQAYKASGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPS 178 HGVG+SVVNALS WL++ +KR+G +Y + G + G + T V F P Sbjct: 120 HGVGLSVVNALSEWLEITVKRDGTVYWQRYEFGKPVTEVKEIGQYDDTESSATIVQFKPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ F+Y+ ++ RLREL+FLNS V I L + S G+ V+ Sbjct: 180 KSIFADTRFDYEVIRQRLRELAFLNSEVTIELQREGSEPEFFHFESGLAGLLEEVA---- 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + +R G++ ++ +++A + D + EN++ F N++ DGGTH+ GLRSA+++ Sbjct: 236 NSSEKIIDVLRFSGAQQDVQVEVAFTYVDDFDENIVSFVNSVRTVDGGTHVQGLRSAISK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + +V DD R+G +V+++++P+P F QTK KL S VR++VE Sbjct: 296 TLAEVGRRKGLL--KDNNVSSDDFRQGLRAVVAVRVPEPEFEGQTKGKLGSKYVRNIVED 353 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V+ ++LE K ++++ L ++ +R+ +R R++ + + ++ LPGKL+DCS Sbjct: 354 VVSKAFESYLETQNDVTKTLIQRALASAEMRETFKRTREMMKNRLRVESTVLPGKLSDCS 413 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RD +K EL +VEG+SAGGSAKQGR R QA+LPLRGKILNVE+A + ++L ++EI LI Sbjct: 414 SRDVEKRELLIVEGESAGGSAKQGRDRTIQAVLPLRGKILNVEKASWKRVLDNEEIQALI 473 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+GTG+G+ F+ KLRY KIIIMTDADVDGAHIRTLLLTFFFR M L+ G +YI + Sbjct: 474 AAIGTGVGEH-FNFAKLRYGKIIIMTDADVDGAHIRTLLLTFFFRMMRPLVEEGHIYIAQ 532 Query: 539 PPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I + K + Y+ +E L+ +L G ++ L Sbjct: 533 PPLYKIERKKSKDIIYLYSDEDLQAFLREHEGENFEIQRYKGLGEMNAEQLWE 585 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 5/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V ++ + I + ++ + ++ V + Sbjct: 452 ILNVEKASWKRVLDNEEIQALIAAIGTGVGEHFNFAKLRYGKIIIMTDADVDGAHIRTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTIFS-IGRKGISMQ 737 F F + I + + K I + L + G +Q Sbjct: 512 LTFFFRMMRPLVEEGHIYIAQPPLYKIERKKSKDIIYLYSDEDLQAFLREHEGE-NFEIQ 570 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796 RYKGLGEMNA QLWETTLNP+TR+L V + DA +AD+LFS LMG++V+PR+EFI N+ Sbjct: 571 RYKGLGEMNAEQLWETTLNPETRNLYMVTVEDAEKADELFSVLMGEKVQPRKEFIFANAN 630 Query: 797 LPSALDI 803 L LD+ Sbjct: 631 LVKNLDV 637 >gi|13357637|ref|NP_077911.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762124|ref|YP_001752160.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920490|ref|ZP_02931785.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508595|ref|ZP_02689822.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701878|ref|ZP_02553290.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11270885|pir||E82937 DNA topoisomerase, DNA gyrase subunit B UU081 [imported] - Ureaplasma urealyticum gi|6899032|gb|AAF30486.1|AE002107_10 DNA topoisomerase - DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827701|gb|ACA32963.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902958|gb|EDT49247.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676050|gb|EDT87955.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701184|gb|EDU19466.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 650 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 259/602 (43%), Positives = 374/602 (62%), Gaps = 17/602 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D+ + Y A+SI++L+GL+AV+KRP MYIG T E GLHHMI+E++DN+IDE++ G+ Sbjct: 1 MNDSNKEKKYTAESIKVLEGLEAVRKRPGMYIGSTQSE-GLHHMIWEIVDNSIDEAMGGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I+ V L DGS V D+GRGIP ++H++ G+S E ++T LHAGGKF+ SYKVSGGL Sbjct: 60 ATIVRVILKKDGSVRVEDDGRGIPIEIHEKTGLSGVETVLTVLHAGGKFDNDSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVT-GSAGNDTGTEVTFLPS 178 HGVG SVVNALS K+ + + Y + FIN G PL + GT + F+P Sbjct: 120 HGVGASVVNALSKNFKVWVNKNHVQYYVEFINGGHAIEPLKPINNKDVKEKGTTIEFIPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +I +++ + RL++L++LN V I + + R+ Y+GG++ +++ L+ Sbjct: 180 FEIMEENEWDELKIMARLKQLAYLNKGVNIEFESELT--NRKEKWHYEGGLKEYITDLNA 237 Query: 239 HKKPLMQSPIRIQGSR-----------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 K+PL + + + NI ++A ++N+ Y+ + F NNI +GGT Sbjct: 238 EKEPLFDLIVYGEEEKEVRVPGHNEQTYNIKCEVAFQYNNSYNNSTHSFCNNINTTEGGT 297 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G + A+TR + Y K + +D EG T+++S+K P+P++ QTK+KL Sbjct: 298 HEEGFKLAITRLLNKYAVDKKYLKDTDDKITKEDVSEGLTAIISVKHPNPQYEGQTKKKL 357 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 +SEVR V + +L E+P E+K IV KV+ A+ R + AR+ TRRK + Sbjct: 358 GNSEVRPYVNEITSIIFEKFLNENPEESKKIVAKVMQAAEARRRSHEAREATRRKSPFES 417 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 SLPGKLADCS RD +E+++VEGDSAGGSAK GR RE QAILPLRGKI+NVE+A+ DK Sbjct: 418 NSLPGKLADCSNRDSSVTEIYIVEGDSAGGSAKTGREREFQAILPLRGKIINVEKAKIDK 477 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 + +++EI +ITA G GIG F+I KLRY KIIIMTDADVDG+HIR LLLTFF+R M Sbjct: 478 IFANEEIQNMITAFGAGIG-PEFNIEKLRYSKIIIMTDADVDGSHIRILLLTFFYRYMLP 536 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI NG +YI +PPLY ++ K+++Y ++ LE S + G ++ + L Sbjct: 537 LIQNGNVYIAQPPLYKVSYAKTIKYAYSDQELERIKSTISNIKYNIQRYKGLGEMNPDQL 596 Query: 588 RN 589 Sbjct: 597 WE 598 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 ++QRYKGLGEMN QLWETT++P R LL+V I DA+ AD FS LMGD+V PR+EFI+ Sbjct: 580 YNIQRYKGLGEMNPDQLWETTMDPKNRLLLKVNIEDAAIADKTFSLLMGDDVAPRKEFIE 639 Query: 794 ENSLPS-ALD 802 +N+ +D Sbjct: 640 KNAKYVKNID 649 >gi|305681577|ref|ZP_07404383.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266] gi|305658737|gb|EFM48238.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266] Length = 673 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 269/640 (42%), Positives = 382/640 (59%), Gaps = 40/640 (6%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y A SI IL+GL+AV+KRP MYIG T+ E GLHH+++EV+DN++DE++ GY Sbjct: 1 MA--TAEHEYGASSITILEGLEAVRKRPGMYIGSTN-ERGLHHLVWEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + VT+ DG V DNGRGIP ++H G +V+MT+LHAGGKF+ +SY VSGGL Sbjct: 58 ADKVEVTILADGGIEVIDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSESYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I L V G TGT V F P + Sbjct: 117 HGVGISVVNALSTRVEADIKRDGKHWYQNFTNAIP-EEL-VAGGPAEGTGTTVRFWPDPE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 +F F+++ + RL+E++FLN + I+L DKR+ E Sbjct: 175 VFETTVFSFELIARRLQEMAFLNKGLTITLTDKRASEEEIELETLAEEIAEGDPETAVEA 234 Query: 222 -------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 T +Y G++ +V +L++ K + + I ++ +N+ +++AM+WN G Sbjct: 235 AEEKVVKKKEKKKTFYYPNGLQDYVEHLNKSKTAIHPTIISLEVKGENLEVEVAMQWNSG 294 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y ++V F N I +GGTH G R+ALT + Y + K+ ++++ GDDCREG + Sbjct: 295 YAQSVHTFANTINTIEGGTHEEGFRAALTSLMNKYAREHKLLKEKEQNLTGDDCREGLAA 354 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+++ +P+F QTK KL +SEVR V+ +N+ +S WL+ +P EAK+I+ K + ++ Sbjct: 355 VISVRVGEPQFEGQTKTKLGNSEVRGFVQKAINEHVSDWLDANPAEAKVIINKAVSSAHA 414 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR++ RRK D+ LPGKLADC +DP KSEL++VEGDSAGGSAK GR Q Sbjct: 415 RVAARKAREMVRRKSATDLGGLPGKLADCRSKDPAKSELYIVEGDSAGGSAKGGRDSMYQ 474 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDI KLRY KI++M DADV Sbjct: 475 AILPLRGKILNVEKARLDKVLKNNEVQAIITALGTGI-HDEFDIQKLRYGKIVLMADADV 533 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVKDEESLEDYLINQS 567 DG HI TLLLT FR MP LI G +++ +PPLY + + + ++ L Sbjct: 534 DGQHIATLLLTLLFRFMPQLIEEGHVFLAQPPLYKLKWAKGDPGFAYSDNQRDELLAEGL 593 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPN 607 + D N + Sbjct: 594 AAGRKINKDDGIQRYKGLGEMNASELWETTLDPQVRILRR 633 Score = 138 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL + GRK I+ +QRYKGLGEMNAS+LWETTL+P R L RV + DA AD+L Sbjct: 587 ELLAEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTLDPQVRILRRVDMNDAQLADEL 645 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LD+ Sbjct: 646 FSILMGDDVAARRSFITRKAKDVRFLDV 673 >gi|50812242|ref|NP_389691.2| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221309697|ref|ZP_03591544.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. 168] gi|221314019|ref|ZP_03595824.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318941|ref|ZP_03600235.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. JH642] gi|221323215|ref|ZP_03604509.1| DNA topoisomerase IV subunit B [Bacillus subtilis subsp. subtilis str. SMY] gi|3914289|sp|Q59192|PARE_BACSU RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|2558946|gb|AAB81614.1| ParE [Bacillus subtilis] gi|32468765|emb|CAB13692.2| subunit B of DNA topoisomerase IV [Bacillus subtilis subsp. subtilis str. 168] Length = 655 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ Sbjct: 1 MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G +Y+ F N G L G TGT F P Sbjct: 118 HGVGASVVNALSEWLTVTIERDGFVYQQRFENGGKPVTSLEKIGKTK-KTGTLTHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS +N++TL RLRE +FL ++I LID+R+ + +Y+ GIEAFV+ Sbjct: 177 TMFSTTTYNFETLSERLRESAFLLKGLKIELIDERNDQR--EVFYYENGIEAFVA-YLNE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +K ++ + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 234 EKDVLSEVVSFEGEHHSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 354 AIVSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI +G ++ Sbjct: 474 TIIHAIGGGVGAD-FSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + + +Y + ++ I + ++ Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMGDVLKKVGKGYTIQRYKGLGEMNADQ 586 Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + + I+ A + + + +A L+ + E Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646 Query: 652 S 652 Sbjct: 647 E 647 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + E + E L S+N +N + Sbjct: 377 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + V N E + ++ ++ ++ I + N D Sbjct: 437 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 496 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718 ++ + F + I ++ + + K +I Sbjct: 497 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 556 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + D + +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ + + Sbjct: 557 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 615 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I++N Sbjct: 616 TLMGDKVEPRRKWIEKN 632 >gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A] gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A] Length = 642 Score = 571 bits (1471), Expect = e-160, Method: Composition-based stats. Identities = 290/634 (45%), Positives = 403/634 (63%), Gaps = 9/634 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L G+ I V Sbjct: 4 KSDYGAEQIQVLEGLEPVRKRPGMYIG-TTGPKGLHHLVYEVVDNSIDEALAGHCTHIEV 62 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N+DGS TV+DNGRGIPTD+H G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 63 DINIDGSVTVTDNGRGIPTDIHPATGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 122 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS WL +++ R+ ++Y + G+ + L + GT V+FLP IF+ Sbjct: 123 VVNALSEWLIIKVWRDNSVYTQRYECGVAVSELKKEPDTEHPKGTSVSFLPDKQIFTSDT 182 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y TL RLREL++LNS + I D R EP T FY+GG+ +V+Y+ R+K+ L + Sbjct: 183 NFDYATLSARLRELAYLNSQITIKFTDYRKQEPYSETYFYEGGLREYVTYMCRNKEALHK 242 Query: 246 SPIRIQGSRDNISIDLA-MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I I G + + ++ A + D Y +N+L F NNI DGGTHL GL++ LTR + + Sbjct: 243 DIIYICGEKKGVQVEAALLWCIDAYSDNLLGFANNIRTIDGGTHLEGLKTVLTRTMNNVA 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K+++ ++ G++ REG T ++S+K+P+P F QTK KL ++EVR +V+ V + L Sbjct: 303 RKRNKIKENEPNLSGENVREGLTGIVSVKVPEPEFEGQTKTKLGNTEVRGIVDLLVGEVL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE +P II++K + A +AARRARDL RRK VL+ + LPGKLADCS RDP + Sbjct: 363 GEYLEFNPHVGDIIIEKAVQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSTRDPAE 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E+FLVEGDSAGGSAKQGR R QAILPLRGKI+N+E+ K+ + EI +LITALG G Sbjct: 423 AEIFLVEGDSAGGSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSLITALGLG 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I + FD+++LRYH+I+IMTDADVDGAHIRTL+LTFF+R LI GF+YI PPLY I Sbjct: 483 IKGEEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYIACPPLYKI 542 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 RG++ Y +E+ L+D + + + G + L N ++ + Sbjct: 543 ERGRNHSYCYNEQQLQDNIKALPANAKYTIQRFKGLGEMMPVQLWNT-----TMNPETRS 597 Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 +E I + + + + Sbjct: 598 MKRVEIDDAVEADRIFTILMGDKVAPRRQFIENY 631 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 4/157 (2%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + + S +V V + F + + I I + + Sbjct: 486 EEFDVSQLRYHRIVIMTDADVDGAHIRTLILTFFYRYQRLLIEQGFIYIACPPLYKIERG 545 Query: 711 GDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L D I ++ ++QR+KGLGEM QLW TT+NP+TRS+ RV+I D Sbjct: 546 RNHSYCYNEQQLQDNIKALPANAKYTIQRFKGLGEMMPVQLWNTTMNPETRSMKRVEIDD 605 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 A +AD +F+ LMGD+V PRR+FI+ LDI Sbjct: 606 AVEADRIFTILMGDKVAPRRQFIENYGSKLNLNDLDI 642 >gi|154249648|ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1] gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1] Length = 650 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 260/589 (44%), Positives = 372/589 (63%), Gaps = 12/589 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + S Y+A +IQ+LKGL+ V++RP MYIG T G++GLHH++YE++DN+IDE+L+G+ D I Sbjct: 16 NEASDYNAQNIQVLKGLEPVRQRPGMYIGST-GKNGLHHLVYEIVDNSIDEALQGFCDTI 74 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ DGS V DNGRGIP D+H E G SA EV+MT LHAGGKF++ SYKVSGGLHGVG Sbjct: 75 KVTIKSDGSVEVEDNGRGIPVDIHPETGTSALEVVMTTLHAGGKFSKSSYKVSGGLHGVG 134 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS W+++ + R+G IY + G+ + V G N GT V F P IF+ Sbjct: 135 ASVVNALSEWMEVEVHRDGKIYRQRYARGVKTTEVEVIGET-NKRGTIVRFKPDKLIFTT 193 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +F+ DT+ RLR+L+FLN S+ I +D+R+ R + GG++ F+++L++ K L Sbjct: 194 TEFDSDTILTRLRDLAFLNPSITIEFVDERNDIKRTLHY--AGGLKEFIAHLNKGSKTLH 251 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I GS+ + + +A ++ D E ++ F NNI DGGTH++G ++A TR + Sbjct: 252 -EVVVIDGSQQDCEVHIAFQYTDEDGETIVSFVNNIKTIDGGTHVTGFKTAFTRVVNELG 310 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSI-KMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 +K G+D REG T+V+++ M P+F QTK KL + E++ V V D Sbjct: 311 KKKNLI--KGEPFKGEDLREGMTAVVNVLMMGTPQFEGQTKSKLGNEEIQDAVAKVVRDK 368 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L+ + E + KII++K A R+AA+RAR+ +RK L ++LPGKLADC ++ + Sbjct: 369 LTDYFEVNETVLKIIIQKAQQAREAREAAKRAREAVKRKSALGASTLPGKLADCITKNFE 428 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 ++ELF+VEGDSAGGSAKQ R R QAILPLRGKILNVE++ K+L ++++ I Sbjct: 429 EAELFIVEGDSAGGSAKQARDRNFQAILPLRGKILNVEKSSELKLLKNEQVKD-IIMAIG 487 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G ++FD +KLRY KI+IMTDADVDGAHIRTLLL F+R M LI +YI PPLY Sbjct: 488 GGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLLLALFYRYMRQLIEEERIYIAMPPLYK 547 Query: 544 IT-RGKSLQYVKDEESLEDY--LINQSLSEEIELFCDSKGVISKNDLRN 589 ++ G+ Y+ +E L + + Q+ G ++ L Sbjct: 548 LSISGEKPMYLYSDEELNEMINIAKQNNKRYEVQRYKGLGEMNPEQLWE 596 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 6/189 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E+ + ++ + + I +++ S +V V + Sbjct: 462 ILNVEKSSELKLLKNEQVKDIIMAIGGGIGENFDTSKLRYGKIVIMTDADVDGAHIRTLL 521 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR---KGISMQ 737 + + I RI + L +G+K L+ + +I + K +Q Sbjct: 522 LALFYRYMRQLIEEERIYIAMPPLYKLSISGEKPMYLYSDEELNEMINIAKQNNKRYEVQ 581 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 RYKGLGEMN QLWETT+NP TR +++VKI DA +AD LF LMG + E RRE+I ++ Sbjct: 582 RYKGLGEMNPEQLWETTMNPKTRKIIKVKIEDAEEADSLFEILMGKDPEERREYIMRHAR 641 Query: 798 P---SALDI 803 LD+ Sbjct: 642 QLSLVDLDV 650 >gi|296876577|ref|ZP_06900627.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] gi|296432396|gb|EFH18193.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] Length = 649 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 272/649 (41%), Positives = 391/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I VT+N DGS +V D GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGSQIDVTINKDGSLSVVDQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F + G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEDGGKPVTTLEKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ R++E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DPTIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L G D +++AM++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 239 EDKETLTPVL-YFSGESDGFQVEVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FSVEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ + I I D + + + + + +L Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ ++ + I + N D ++ + Sbjct: 461 VLNTEKANMSDILKNEEINTMIYTIGAGVGADFSVEDANYDKIIIMTDADTDGAHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + + + + G K ++ S L+ + +G ++Q Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDSELEELRRTFGRGATLQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 581 RYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638 >gi|255284071|ref|ZP_05348626.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469] gi|255265416|gb|EET58621.1| DNA gyrase subunit B [Bryantella formatexigens DSM 14469] Length = 639 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 247/622 (39%), Positives = 362/622 (58%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YDA SI +L+GL+AV+KRP MYIG GL+H++YE++DNA+DE L GY I Sbjct: 1 MAKKTYDAASISVLEGLEAVRKRPGMYIGSVSR-KGLNHLVYEIVDNAVDEHLAGYCSQI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L DGS TV+DNGRG+P D+H++ G+ A ++ T LHAGGKF+ SYK SGGLHGVG Sbjct: 60 EVYLEKDGSATVNDNGRGVPVDMHEK-GVPAERLVFTTLHAGGKFDNDSYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSS 179 SVVNALS++L +++ G I+ F G+ L TG TGT + FLP Sbjct: 119 SSVVNALSTYLDVQVSLGGQIHHDRFERGVPVVELEKGLLPVTGKTK-KTGTCINFLPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F + ++ RL E ++LN ++ I D+R E + GI FV L+R+ Sbjct: 178 EIFEKTQFAAEEIKSRLHETAYLNPALTIIFEDRRGAETEHLEYHEPDGIIGFVKDLNRN 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + P+ ++G D I+++ A ++ + +HENVL F NNI +GGTHL+G ++A T Sbjct: 238 KETVQDPPVYLKGELDGITVECAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTAFTAI 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y + K+ + G D R G T+V+S+K P PRF QTK KL + + V Sbjct: 298 MNNYARELGILKEKDANFTGADIRNGMTAVVSVKHPAPRFEGQTKTKLDNQDAAKAVAKV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V D + + + K ++ A+ +R +A+ K S GKLA+C Sbjct: 358 VGDEAVLYFDRNLETLKKVLSCAERAAKIRRTEEKAKTNLLTKQKYSFDS-NGKLANCES 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R P+ E+F+VEGDSAGGSAK R+R QAI+P+RGKILNVE+A DK+L++ EI T+I Sbjct: 417 RKPELCEIFIVEGDSAGGSAKMARNRSFQAIMPIRGKILNVEKASIDKVLANAEIKTMIN 476 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 477 AFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHIYI 536 Query: 537 IKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY +Y+ D+++LE Y + ++ + + ++ ++ Sbjct: 537 AMPPLYKAMPARGPEEYLYDDKALEKYR-KTHKNFTLQRYKGLGEMDAQQLWETTLNPET 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ + ++ + E + Sbjct: 596 RVLRRVEIEDARMASSVTEMLM 617 Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 41/72 (56%), Positives = 52/72 (72%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEM+A QLWETTLNP+TR L RV+I DA A + LMG EV PR+ F Sbjct: 568 KNFTLQRYKGLGEMDAQQLWETTLNPETRVLRRVEIEDARMASSVTEMLMGTEVPPRKAF 627 Query: 792 IQENSLPSALDI 803 I E++ + LD+ Sbjct: 628 IYEHAKDAELDV 639 >gi|18414465|ref|NP_568133.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative [Arabidopsis thaliana] gi|75165162|sp|Q94BZ7|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana] gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana] gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana] Length = 732 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 264/597 (44%), Positives = 370/597 (61%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ GYA Sbjct: 84 ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGYAS 142 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 + V L+ DGS +V DNGRGIPTDLH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 143 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 202 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G ++ ++ G L + GT + F P Sbjct: 203 HGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWP 262 Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234 ++F+ +F+++T+ R+REL+FLN V ISL + + + + GG+ +VS Sbjct: 263 DKEVFTTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVS 322 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ K P+ + + ++D+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 323 WLNTDKNPIHDVLG-FRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 381 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR + + +KS K+ S+ G+ REG T ++S+K+P+P F QTK +L + EVR Sbjct: 382 ASLTRTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVR 441 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V+ V + L+ +LE HP + I+ K L+A AA+RAR+L R K VL +SLPGK Sbjct: 442 KIVDQSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGK 501 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS DP+ SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++E Sbjct: 502 LADCSSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 561 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 562 IQNLILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGC 621 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPL+ + RGK+ QY D+ L+ N + G + L Sbjct: 622 IYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWE 678 Score = 125 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562 D + G H+R L ++P+ G P + I +Y+ + L Sbjct: 402 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPD 461 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN----------------------FIDDALKIDKL 600 ++ +S+ + + + +L + + ++ Sbjct: 462 ILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGD 521 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655 + QA++ + + + + K N I K E Sbjct: 522 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 581 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ I++ V + F F + + I + + + Sbjct: 582 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQY 640 Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L I S ++QR+KGLGEM QLWETT+NP+TR L ++ + D ++A Sbjct: 641 CYDDAD-LKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEA 699 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 + FS LMG V+ R+E I+ + LDI Sbjct: 700 NMTFSSLMGARVDVRKELIKNAATRINLQRLDI 732 >gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1] gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1] Length = 640 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 288/592 (48%), Positives = 391/592 (66%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M +N SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ Sbjct: 1 MEENKVEHSYDESDIQVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEIVDNSIDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V L V DNGRG+PT H + G S E I+T LHAGGKF YKVSGGL Sbjct: 60 CNEIKVILEKGDIVKVIDNGRGMPTGKHAKTGKSTVETILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + REG+IY F G + L + G +DTGT V+F Sbjct: 120 HGVGASVVNALSEWLEVHVHREGHIYYQRFEKGGVPVGDLKIIGDC-DDTGTIVSFKADP 178 Query: 180 DIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ ++YDTL R+REL+FLN +++ L D R+ ++ Y+GGI+ +V+YL+R Sbjct: 179 LIFNETTIYDYDTLNQRIRELAFLNKGLKLILEDHRNEPYKKNEYHYEGGIKEYVAYLNR 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K + + I ++ D+I +++ M++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 239 NKTAIHEEIIYVEDEIDDIKVEVGMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y + + KKD S+ GDDCREG T+++S+K PDP++ QTK KL +SEVR + + Sbjct: 299 VINNYAKNNNFLKKDDESLNGDDCREGLTAIISVKHPDPQYEGQTKTKLGNSEVRKIASN 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +++ L +L E+P A II+ K + AS R AA+RAR++TRRK LD +LPGKLADCS Sbjct: 359 IISEALDKFLLENPDTASIIMNKAIVASHARMAAKRAREMTRRKTALDSIALPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP + E+F+VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++L + EI ++I Sbjct: 419 SKDPSECEVFIVEGDSAGGSAKMGRDRRTQAILPLRGKILNVEKARLDRILGNAEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG D FDI+KLRYHKI+IMTDADVDG HIR L+LTF +R + LI GF+Y + Sbjct: 479 TAFGTGIG-DEFDISKLRYHKIVIMTDADVDGGHIRILMLTFLYRFLKPLIEEGFVYAAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY + GK Y+ + LE + + + G ++ L Sbjct: 538 PPLYLLKHGKEEHYLYSDYELEKLKEDLGPNAKYNIQRYKGLGEMNAEQLWE 589 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 12/121 (9%) Query: 691 RIFSNRIEENYLTILS-----LICNGDKIKITGPCSLLDTIFS----IGRKGISMQRYKG 741 R IEE ++ L ++ + L+ + + ++QRYKG Sbjct: 522 RFLKPLIEEGFVYAAQPPLYLLKHGKEEHYLYSDYE-LEKLKEDLGPNAK--YNIQRYKG 578 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSAL 801 LGEMNA QLWETT++P+ R L ++ + DA QAD +F LMG++VEPRREFIQE++ + L Sbjct: 579 LGEMNAEQLWETTMDPENRLLWQIDLDDAMQADAMFDTLMGEKVEPRREFIQEHAQEAEL 638 Query: 802 D 802 D Sbjct: 639 D 639 >gi|255283818|ref|ZP_05348373.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469] gi|255265701|gb|EET58906.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469] Length = 641 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 305/585 (52%), Positives = 400/585 (68%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY D + V Sbjct: 6 NQEYGADQIQILEGLEAVRKRPGMYIGSTS-LRGLHHLVYEIVDNSIDEALAGYCDTVDV 64 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+N D S TV DNGRGIP ++ + GI A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 65 TINEDNSITVIDNGRGIPVGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 124 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY + G + + L VTG TGT+++FLP +IF Sbjct: 125 VVNALSEWLEVNIYHEGKIYFQRYERGHVMDKLKVTGECEPGKTGTKISFLPDKEIFEET 184 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+++TL+ RLRE++FL +V+I L DKR EP E Y+GGI FV+YL++ K PL Q Sbjct: 185 VFDFNTLKQRLREMAFLTKNVKIILRDKREEEPVERVFHYEGGIREFVTYLNKGKTPLYQ 244 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G+RDNI +++AM+ ND Y E F NNI +GGTHL+G ++ALT+ +Y + Sbjct: 245 DIIYCEGTRDNIYVEVAMQHNDSYTEGSYSFVNNITTPEGGTHLTGFKNALTKTFNAYAK 304 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K + S+ G+D REG T+++SIK+ DP+F QTK+KL +SE R V+S V++ L Sbjct: 305 ANKLIKDTE-SLSGEDIREGMTAIVSIKIEDPQFEGQTKQKLGNSEARGAVDSVVSEQLM 363 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE+HP AK+I+ K + A R+AAR+ARDLTRRK LD SLPGKLADCS+++P Sbjct: 364 IYLEQHPQAAKLILDKSIMAQRAREAARKARDLTRRKSALDGLSLPGKLADCSDKNPANC 423 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK+ RSR QAILPLRGKILNVE+AR D++ ++ EI +ITA GTGI Sbjct: 424 EIYIVEGDSAGGSAKEARSRATQAILPLRGKILNVEKARLDRIYANAEIKAMITAFGTGI 483 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D FDI KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 484 -HDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 542 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 R K + Y ++ L+ L + G + L Sbjct: 543 RNKKVWYAYSDDELDAILKEVGRDQNNKIQRYKGLGEMDAEQLWE 587 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENY----LTILSL 707 G ++ DI R + + ++G+ I + + R + I+E Y L Sbjct: 481 TGIHDDFDITKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 540 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + K+ LD I + + +QRYKGLGEM+A QLWETT++P R LLRV Sbjct: 541 LERNKKVWYAYSDDELDAILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPQKRVLLRV 600 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + + + + D F+ LMGD+VEPRREFI+EN++ + LDI Sbjct: 601 TMDEETSSELDLTFTTLMGDQVEPRREFIEENAVYAQNLDI 641 >gi|302670820|ref|YP_003830780.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus B316] gi|302395293|gb|ADL34198.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus B316] Length = 640 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 253/619 (40%), Positives = 353/619 (57%), Gaps = 14/619 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YDA SI +L+GL+AV+KRP MYIG GL+H++YE++DNA+DE L G+ I VT Sbjct: 5 EQYDASSITVLEGLEAVRKRPGMYIGSV-TTRGLNHLVYEIVDNAVDEHLAGFCTQIHVT 63 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L DGS TV DNGRGIP +H + GI+A V++T LHAGGKF+ +YK SGGLHGVG SV Sbjct: 64 LEADGSATVEDNGRGIPVGMHAK-GITAERVVLTMLHAGGKFDNNAYKTSGGLHGVGSSV 122 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSDIF 182 VNALS+ + +RIK++G IYE S+ GI L GS +TGT + FLP IF Sbjct: 123 VNALSTRMNVRIKKDGFIYEDSYERGIPTTKLVNGLLTPVGST-RETGTTINFLPDDTIF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F D ++ RL E ++LN S+ I DKR I GI F+ +++ K+ Sbjct: 182 EKTRFKEDDIKSRLHETAYLNPSLTIIFQDKRPGVEEYIEFHEPDGITGFIKDMNKSKEA 241 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + G + + +++A ++ + +HE VL F NNI +GGTHL+G ++ T I Sbjct: 242 VH-DVVSFSGESEGVEVEVAFQYVNEFHEEVLGFCNNIYNAEGGTHLTGFKTMFTNIINQ 300 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K + G D R G T+V+SIK PDPRF QTK KL + + VV ND Sbjct: 301 YARELNILKDKDNNFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNQDAAKVVSKITND 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 ++ + + + K I+ A+ +R +A+ K GKLA+C +D Sbjct: 361 EMTRFFDRNLETLKAIIGCAEKAAKIRKTEEKAKTNMLTKQK-YSFDSNGKLANCISKDA 419 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A G Sbjct: 420 SKCEIFIVEGDSAGGSAKMARDRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFG 479 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G + + FDINKLRY KIIIM DADVDG HI TLLLT F+R MP LI+ G +Y+ P Sbjct: 480 CGFSEGYGNDFDINKLRYDKIIIMADADVDGEHISTLLLTLFYRFMPELIYQGHVYVAMP 539 Query: 540 PLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PLY +Y+ D+ +L Y + ++ + + ++ +D ++ Sbjct: 540 PLYKAMPARGKEEYLYDDSALAKYRATHKGNFTLQRYKGLGEMDAQQLWETTLDPERRML 599 Query: 599 KLIKDFYPNHDKTFIEQAV 617 K ++ E + Sbjct: 600 KAVEIEDAKMASQITELLM 618 Score = 132 bits (331), Expect = 4e-28, Method: Composition-based stats. Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 3/95 (3%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR-VKIT 768 G + + S L + + ++QRYKGLGEM+A QLWETTL+P+ R +L+ V+I Sbjct: 548 RGKEEYLYD-DSALAKYRATHKGNFTLQRYKGLGEMDAQQLWETTLDPE-RRMLKAVEIE 605 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA A + LMG +V PRREFI +++ + LDI Sbjct: 606 DAKMASQITELLMGVDVPPRREFIHQHATDAELDI 640 >gi|169627114|ref|YP_001700763.1| DNA gyrase subunit B [Mycobacterium abscessus ATCC 19977] gi|169239081|emb|CAM60109.1| DNA gyrase (subunit B) GyrB (DNA topoisomerase) [Mycobacterium abscessus] Length = 675 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 267/654 (40%), Positives = 380/654 (58%), Gaps = 39/654 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ S Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKKSAKSEYSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + VT+ DG V D+GRGIP +H GI +V+MT+LHAGGKF+ SY VSG Sbjct: 60 GYATTVEVTMLADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVNALS+ L++ I R+G ++ + L G+A TGT V F Sbjct: 119 GLHGVGISVVNALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF ++++T+ RL+E +FLN + I L D+R Sbjct: 177 PEIFETTTYDFETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQ 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y G+ FV +++R K + + + G + +++AM+WN G Sbjct: 237 AAESSAPHKVKNRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y ++ K+ ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W + +P +AK +V K + ++ Sbjct: 357 VISVKVGEPQFEGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG HI TLLLT FR M L+ +G +++ +PPLY + ++ + D L+ L Sbjct: 536 DGQHISTLLLTLLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGL 595 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ D I + +D + + + ++ A + Sbjct: 596 KAGKKINKDDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402] gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402] Length = 642 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 287/624 (45%), Positives = 406/624 (65%), Gaps = 6/624 (0%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Y AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GYAD Sbjct: 5 EQQNLDQYGADQIQVLEGLEAVRKRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYAD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + VT+ D V+DNGRGIP D+ K+ G A EVI+T LHAGGKF YKVSGGLHG Sbjct: 64 HVEVTIEEDNWIKVTDNGRGIPVDIQKKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHG 123 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALSS L++ + ++G IY ++ G+ L V G + TGT + F S+IF Sbjct: 124 VGSSVVNALSSTLEVYVHKDGKIYHQAYHRGVPAFDLKVIGET-DKTGTVIRFKADSEIF 182 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-PEPREITMFYKGGIEAFVSYLDRHK 240 + + Y+ LQ R+REL+FLN +++ + D+R E R Y+GGI+++V L++ K Sbjct: 183 TETTEYEYEILQKRIRELAFLNKGIKLEIKDEREQDEIRHDVYHYEGGIKSYVELLNKSK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L PI I +RD I +++++++N+GY N+L + NNI +GGTH G + ALTR I Sbjct: 243 ETLFPEPIYIHDNRDEIEVEISIQYNNGYSTNLLSYANNIHTYEGGTHEDGFKRALTRVI 302 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY K+ K+ + G+D REG T+++SIK +P+F QTK KL ++EVR + ++ Sbjct: 303 NSYGVKNKLIKEADEKLSGEDVREGITAIVSIKHGNPQFEGQTKTKLGNTEVRQITDNLF 362 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +L E+P A+IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS + Sbjct: 363 AENFERFLLENPPIARIIVEKGIMASRARLAAKKAREVTRRKSGLEISSLPGKLADCSSK 422 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + EI ++ITA Sbjct: 423 DPSISELYIVEGDSAGGSAKSGRDSKTQAILPLRGKILNVEKARLDRILGNNEIRSMITA 482 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M L+ G++YI +PP Sbjct: 483 MGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQPP 541 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 L+ + +GK YV +E L+ + G ++ + L + Sbjct: 542 LFKVEQGKKKYYVYNERELDKLRKELPTTPKWQLARYKGLGEMNADQLWETTMNPEHRSM 601 Query: 600 LIKDFYPNHDKTFIEQAVISGVFN 623 L + + + ++ V Sbjct: 602 LQVTLSDAIEADEVFEMLMGDVVE 625 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 3/103 (2%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + + K + LD + + RYKGLGEMNA QLWETT+NP+ R Sbjct: 541 PLFKVEQGKKKYYVYNERE-LDKLRKELPTTPKWQLARYKGLGEMNADQLWETTMNPEHR 599 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 S+L+V ++DA +AD++F LMGD VE RR FI+EN+ + +D+ Sbjct: 600 SMLQVTLSDAIEADEVFEMLMGDVVEHRRTFIEENAEYANVDV 642 >gi|268324621|emb|CBH38209.1| DNA gyrase subunit B [uncultured archaeon] Length = 635 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 289/619 (46%), Positives = 398/619 (64%), Gaps = 16/619 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SY A IQ+LK L AV+KRP+MYIGDT G GLHH+ EV+DN++DE++ G+ I V Sbjct: 2 EESYSAKDIQVLKDLTAVRKRPAMYIGDT-GTRGLHHLANEVIDNSVDEAIIGFCTSIVV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S TV+DNGRGIP D+H E +SA EV+MT+LHAGGKF+ K YKV+GGLHGVG+S Sbjct: 61 IIHPDNSVTVTDNGRGIPVDMHSEYNLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDIFS 183 VVNALS W ++ + REG Y + +G + TG + GT V F P S IF Sbjct: 121 VVNALSEWQEVEVLREGKRYYQRYEHGKAVCEVKELSYTGENNGECGTRVRFKPDSTIFG 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +F+ L RLREL+FLN + +SL D+RS E R Y+GGI +F+ Y++R+KK L Sbjct: 181 VYEFDAHLLATRLRELAFLNRGLSLSLKDERSGEER--AFKYEGGITSFLEYINRNKKVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +G +D++ + + +++ND Y EN+ F NN+ +GG HLSG ++ALTR + Y Sbjct: 239 HSPIT-FEGEKDDVKVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKAALTRVLNEY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + + K ++ GDD REG +V+S+K+ +P+F QTK KL +SEV+ +VESFV + Sbjct: 298 GKSNNML--KKVNLDGDDVREGLAAVISLKLREPQFEGQTKTKLGNSEVKGIVESFVREH 355 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L+E+P + I++K L+AS R+AAR AR++ R+K + LPGKLADCSERDP Sbjct: 356 LWDFLDENPKDGDAIIRKALEASRAREAARHAREIVRKKDSFADS-LPGKLADCSERDPA 414 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K E+++VEGDSAGGSAKQ R + QAILP+RGKILNVE+AR DK+L S EI TLITALG Sbjct: 415 KKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTLITALGA 474 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FD+ K RY+KIIIM+DADVDGAHIRTLLLTFF+R M L+ +Y+ PPLY Sbjct: 475 GIG-DDFDMEKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVSANHIYVALPPLYM 533 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK ++Y ++ + L ++ E D+ I ++ + + Sbjct: 534 VKKGKEIRYAFSDDEYVNILDELNVKE-----GDAGVKIQHYKGLGEMNPEQLWETTMNP 588 Query: 604 FYPNHDKTFIEQAVISGVF 622 +E A Sbjct: 589 ATRGIKLVTLEDAAEVDWL 607 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 9/131 (6%) Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCS-----LLDTI-FSIGRKG 733 + +F +Y + S L L ++ G +I+ +LD + G G Sbjct: 506 LLLTFFYRYMQELVSANHIYVALPPLYMVKKGKEIR-YAFSDDEYVNILDELNVKEGDAG 564 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +Q YKGLGEMN QLWETT+NP TR + V + DA++ D LF+ LMG+EVEPRR FIQ Sbjct: 565 VKIQHYKGLGEMNPEQLWETTMNPATRGIKLVTLEDAAEVDWLFTVLMGEEVEPRRNFIQ 624 Query: 794 ENSLPS-ALDI 803 ++ LDI Sbjct: 625 AHAKEVMNLDI 635 >gi|52549974|gb|AAU83823.1| DNA gyrase subunit B [uncultured archaeon GZfos34A6] Length = 635 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 289/619 (46%), Positives = 398/619 (64%), Gaps = 16/619 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SY A IQ+LK L AV+KRP+MYIGDT G GLHH+ EV+DN++DE+L G+ I V Sbjct: 2 EESYSAKDIQVLKDLTAVRKRPAMYIGDT-GTRGLHHLANEVIDNSVDEALIGFCTSIVV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S TV+DNGRGIP D+H E +SA EV+MT+LHAGGKF+ K YKV+GGLHGVG+S Sbjct: 61 IIHPDNSVTVTDNGRGIPVDMHSEYNLSALEVVMTKLHAGGKFDNKVYKVAGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDIFS 183 VVNALS W ++ + R+G Y + G + T + GT VTF P S IF Sbjct: 121 VVNALSEWQEVEVVRDGKRYFQRYEYGKPVCEVKELSYTDENNGECGTRVTFKPDSTIFG 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +F+ L RLREL+FLN + +SL D+RS E R Y GGI +F+ Y++R+KK L Sbjct: 181 VYEFDAHILATRLRELAFLNRGLLLSLKDERSGEDR--AFKYDGGITSFLEYINRNKKVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +G +D++ + + +++ND Y EN+ F NN+ +GG HLSG ++ALTR + Y Sbjct: 239 HSPIT-FEGEKDDVKVAIGLQYNDSYAENIFSFVNNVKTVEGGKHLSGFKAALTRVLNEY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + + K ++ GDD REG +++S+K+ +P+F QTK KL +SEV+ +VESFV + Sbjct: 298 GKSNNML--KKVNLDGDDVREGLAAIISLKLREPQFEGQTKTKLGNSEVKGIVESFVREH 355 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L+E+P +A I++K L+AS R+AAR AR++ R+K + LPGKLADCSERDP Sbjct: 356 LWDFLDENPKDADAIIRKALEASRAREAARHAREIVRKKDSFADS-LPGKLADCSERDPA 414 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K E+++VEGDSAGGSAKQ R + QAILP+RGKILNVE+AR DK+L S EI TLITALG Sbjct: 415 KKEIYIVEGDSAGGSAKQARDKNFQAILPIRGKILNVEKARLDKILKSNEIRTLITALGA 474 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GIG D FD+ K RY+KIIIM+DADVDGAHIRTLLLTFF+R M L+ +Y+ PPLY Sbjct: 475 GIG-DDFDMQKARYNKIIIMSDADVDGAHIRTLLLTFFYRYMQELVTANHIYVALPPLYM 533 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + +GK ++Y ++ + L + ++ E D+ I ++ + + Sbjct: 534 VKKGKEIRYAFSDDEYVNILDDLNVKE-----GDAGVKIQHYKGLGEMNPEQLWETTMNP 588 Query: 604 FYPNHDKTFIEQAVISGVF 622 +E A Sbjct: 589 ATRGIKLVTLEDAAEVDWL 607 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 9/131 (6%) Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCS-----LLDTI-FSIGRKG 733 + +F +Y + + L L ++ G +I+ +LD + G G Sbjct: 506 LLLTFFYRYMQELVTANHIYVALPPLYMVKKGKEIR-YAFSDDEYVNILDDLNVKEGDAG 564 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +Q YKGLGEMN QLWETT+NP TR + V + DA++ D LF+ LMG+EVEPRR FI Sbjct: 565 VKIQHYKGLGEMNPEQLWETTMNPATRGIKLVTLEDAAEVDWLFTVLMGEEVEPRRNFIH 624 Query: 794 ENSLPS-ALDI 803 ++ LDI Sbjct: 625 AHAKEVMNLDI 635 >gi|295704654|ref|YP_003597729.1| DNA topoisomerase IV subunit B [Bacillus megaterium DSM 319] gi|294802313|gb|ADF39379.1| DNA topoisomerase IV, subunit B [Bacillus megaterium DSM 319] Length = 658 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 266/566 (46%), Positives = 370/566 (65%), Gaps = 13/566 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q +Y+ D+IQ+L+GLDAV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MARK-QQFNYNEDAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GEEIIVTIHKDNSISVQDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IYE F N G L G TGT + F P + Sbjct: 118 HGVGASVVNALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTK-KTGTTIHFKPDA 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +NYDTL RLRE +FL +I LIDKR R +Y+ GI+AFVSYL+ Sbjct: 177 TIFSTTVYNYDTLCERLRESAFLLKGFKIELIDKRHD--RHDIFYYETGIQAFVSYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G NI ++ A ++NDGY E +L F NN+ KDGGTH SG +SA+TR Sbjct: 235 KDSLHP-VVFFEGIHHNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L+ +LEE+P + ++VKK + A+ R+AAR+AR+ +K L GKL Sbjct: 354 AVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+++EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIS 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M L+ G ++ Sbjct: 474 TIIHAIGGGVGAD-FTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561 I PPLY +++G + V + ++ Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDE 558 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ +++ ++ I + N D +V + Sbjct: 455 VINTEKAKLQDIFKNEEISTIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736 F + + + ++ + + K ++ L I +GR G + Sbjct: 515 LTFFYRYMKPLVEAGKVFIALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR-GYMI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++AD + LMGD+VEPRR++I+ N Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAARADRRVTTLMGDKVEPRRKWIESN 632 >gi|294499300|ref|YP_003563000.1| DNA topoisomerase IV subunit B [Bacillus megaterium QM B1551] gi|294349237|gb|ADE69566.1| DNA topoisomerase IV, subunit B [Bacillus megaterium QM B1551] Length = 658 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 266/566 (46%), Positives = 369/566 (65%), Gaps = 13/566 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q +Y+ D+IQ+L+GLDAV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MARK-QQFNYNEDAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GEEIIVTIHKDNSISVQDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IYE F N G L G TGT + F P + Sbjct: 118 HGVGASVVNALSEWLTVTIHRDGFIYEQRFENGGKPVTTLEKIGKTK-KTGTTIHFKPDA 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +NYDTL RLRE +FL +I LIDKR R Y+ GI+AFVSYL+ Sbjct: 177 TIFSTTVYNYDTLCERLRESAFLLKGFKIELIDKRHD--RHDIFHYETGIQAFVSYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G NI ++ A ++NDGY E +L F NN+ KDGGTH SG +SA+TR Sbjct: 235 KDSLHP-VVFFEGIHHNIEVEFAFQFNDGYSETILSFVNNVRTKDGGTHESGAKSAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 294 FNEYARKVSLLKEKDKNLEGTDIREGLGAIVSVRIPEELLQFEGQTKGKLGTSEARSSVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L+ +LEE+P + ++VKK + A+ R+AAR+AR+ +K L GKL Sbjct: 354 AVISEKLAYFLEENPDVSSLLVKKAIKAAQAREAARKAREDARNGKKRKRQETVLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+++EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEIS 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F I+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M L+ G ++ Sbjct: 474 TIIHAIGGGVGAD-FTIDDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLVEAGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561 I PPLY +++G + V + ++ Sbjct: 533 IALPPLYKVSKGSGKKEVVEYSWSDE 558 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ +++ ++ I + N D +V + Sbjct: 455 VINTEKAKLQDIFKNEEISTIIHAIGGGVGADFTIDDINYDKIVIMTDADTDGAHIQVLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISM 736 F + + + ++ + + K ++ L I +GR G + Sbjct: 515 LTFFYRYMKPLVEAGKVFIALPPLYKVSKGSGKKEVVEYSWSDEELQGAIDKVGR-GYMI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++AD + LMGD+VEPRR++I+ N Sbjct: 574 QRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAARADRRVTTLMGDKVEPRRKWIESN 632 >gi|325661698|ref|ZP_08150321.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium 4_1_37FAA] gi|331084709|ref|ZP_08333797.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471951|gb|EGC75166.1| hypothetical protein HMPREF0490_01056 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410803|gb|EGG90225.1| hypothetical protein HMPREF0987_00100 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 640 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 252/640 (39%), Positives = 367/640 (57%), Gaps = 14/640 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDADSI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G+ + I+ Sbjct: 3 KKNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFCNKIS 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGS TV DNGRG+P +H++ GISAA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VFLEKDGSATVEDNGRGVPVGMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS ++ ++I R+G ++ + GI L V TGT V FLP + Sbjct: 121 SVVNALSEYMDVKISRDGGVHHDRYERGIPVVELEDGLLPVIAKT-RKTGTLVNFLPDGE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F D ++ RL E ++LN + I D+R + I GI F+ +++ K Sbjct: 180 IFEKTKFKADEVKSRLHETAYLNPELTIIFEDRRREQTEHIEFHEPDGIIGFIKDMNQKK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G + I +++A ++ + +HENVL F NNI +GGTHL+G ++ T I Sbjct: 240 EVIH-EPVYFKGEAEGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++S+K PDPRF QTK KL + + Sbjct: 299 NQYARELGILKEKDSNFTGADIRNGMTAIVSVKHPDPRFEGQTKTKLDNPDASKATGKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + + + + K ++ A+ +R RA+ K GKLA+C R Sbjct: 359 GEEIVRYFDRNLETLKKVIGCAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G +YI Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y Q+ ++ + + ++ ++ + Sbjct: 538 MPPLYKAMPKKGEEEYLYDDKALEQYRKRQTGPFTLQRYKGLGEMDAEQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + KL++ + E + S V + N + A Sbjct: 598 MLKLVEIEDARMASSVTEMLMGSDVPPRRAFIYENAAEAE 637 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 57/99 (57%), Gaps = 9/99 (9%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLR 764 G++ + D RK + +QRYKGLGEM+A QLWETTLNP+TR L Sbjct: 547 KKGEEEYLYD-----DKALEQYRKRQTGPFTLQRYKGLGEMDAEQLWETTLNPETRMLKL 601 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 V+I DA A + LMG +V PRR FI EN+ + LDI Sbjct: 602 VEIEDARMASSVTEMLMGSDVPPRRAFIYENAAEAELDI 640 >gi|28378501|ref|NP_785393.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum WCFS1] gi|254556715|ref|YP_003063132.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1] gi|300767447|ref|ZP_07077359.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180658|ref|YP_003924786.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271337|emb|CAD64242.1| topoisomerase IV, subunit B [Lactobacillus plantarum WCFS1] gi|254045642|gb|ACT62435.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum JDM1] gi|300495266|gb|EFK30422.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046149|gb|ADN98692.1| DNA topoisomerase IV subunit B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 668 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 262/667 (39%), Positives = 377/667 (56%), Gaps = 19/667 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKSPK--YDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S TV D+GRG+P +H GI EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GKEINVIIHADNSITVVDHGRGMPVGMHAS-GIPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSS L + I R+G Y F + G L G TGT +TF P + Sbjct: 117 HGVGASVVNALSSELTVTIVRDGYRYVEHFKDGGHPVGTLEKKGKTNKPTGTTMTFKPDA 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ +N+ TL RLRE +FL V+I+L D+R + +E+ Y+ GI+AFVSYL+ Sbjct: 177 SIFTTTVYNFQTLAERLRESAFLLKGVKITLTDERENQQQELVFHYEDGIKAFVSYLNED 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G+++ + +++A ++NDGY EN+L F NN+ DGGTH G RSA T+ Sbjct: 237 -KDTLGDIMFFDGTKEGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEVGFRSAWTKA 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K +++ G D REG ++V+S+++P+ +F QTKEKL + E R++V+ Sbjct: 296 FNEYARKVGLLKDKDKNLEGSDVREGLSAVISLRVPENLLQFEGQTKEKLGTPEARTIVD 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L E+ A+++++K A R+AAR+ARD ++ L GKL Sbjct: 356 NIVSEQLQFFLMENGEFAQMLIRKSTKARQAREAARKARDESRNGKRRHKQERLLSGKLT 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ ++ ++EI Sbjct: 416 PAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVKNEEIN 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G FDI Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G +Y Sbjct: 476 TMIYTIGAGVG-PEFDIKASNYDKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDAGKIY 534 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY + + ++ Q + ++ G ++ L Sbjct: 535 IALPPLYRLQKKQNKQLRTEYAWTDEELTLKTKSFGKGYALQRYKGLGEMNAEQLWET-- 592 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + S + L+ + Sbjct: 593 ---TMDPEKRTLVRVRIDDAALAEKRVTTLMGDKVEPRRKWIESNVHFNLDEDGSLLDNE 649 Query: 653 WHGSINN 659 S + Sbjct: 650 AVSSAHE 656 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 7/265 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 377 IRKSTKARQAREAARKARDESRNGKRRHKQERLLSGKLTPAQSKNAKKNELFLVEGDSAG 436 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + +N Sbjct: 437 GSAKQGRDRKFQAILPLRGKVLNTEKAKLADIVKNEEINTMIYTIGAGVGPEFDIKASNY 496 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI---KIT 717 D ++ + F + I + +I + L +K + Sbjct: 497 DKIIIMTDADTDGAHIQILLLTFFYKYMRPMIDAGKIYIALPPLYRLQKKQNKQLRTEYA 556 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L KG ++QRYKGLGEMNA QLWETT++P+ R+L+RV+I DA+ A+ Sbjct: 557 WTDEELTLKTKSFGKGYALQRYKGLGEMNAEQLWETTMDPEKRTLVRVRIDDAALAEKRV 616 Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802 + LMGD+VEPRR++I+ N LD Sbjct: 617 TTLMGDKVEPRRKWIESNVHF-NLD 640 >gi|311068376|ref|YP_003973299.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942] gi|310868893|gb|ADP32368.1| DNA topoisomerase IV subunit B [Bacillus atrophaeus 1942] Length = 656 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 394/661 (59%), Gaps = 22/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ Sbjct: 1 MARKQQQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S +V D GRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 60 GDHIIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G +Y+ F N G L G+ +GT F P Sbjct: 119 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLDKIGTTK-KSGTLTHFKPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FSV +N++TL RLRE +FL ++I LID+R E +Y+ GIEAFV+ Sbjct: 178 AMFSVTTYNFETLSERLRESAFLLKGLKIELIDERH--QVEEVFYYENGIEAFVA-YLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +K + + +G + I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 235 EKDSLSEVVSFEGEHNQIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 295 FNEYARKVSLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 355 AVISEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 415 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F++ + Y KI+IMTDAD DGAHI+ LLLTFF+R M LI +G ++ Sbjct: 475 TIIHAIGGGVGAD-FEVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E ++D L I+ + G ++ + L Sbjct: 534 IALPPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 ++ + + + + +A L+ + E Sbjct: 592 ----TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 647 Query: 652 S 652 Sbjct: 648 E 648 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 6/265 (2%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + ++ + S + ++ Sbjct: 369 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYL 428 Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ + QAV+ V N E + ++ ++ ++ I + Sbjct: 429 VEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 488 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N D +V + F + I ++ + + K Sbjct: 489 EVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 548 Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 +I +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA Sbjct: 549 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 608 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++ + + LMGD+VEPRR++I++N Sbjct: 609 ARVERRVTTLMGDKVEPRRKWIEKN 633 >gi|82798478|gb|ABB91902.1| DNA gyrase subunit B [Acholeplasma vituli] gi|82798480|gb|ABB91903.1| DNA gyrase subunit B [Acholeplasma vituli] Length = 546 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 272/547 (49%), Positives = 372/547 (68%), Gaps = 5/547 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T GE GLHH+++E++DN+IDES+ GYA I++ + V+D+GRGIP D+H Sbjct: 1 MYIGST-GERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHA 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + SA E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I+R G +Y+ Sbjct: 60 KTKKSAVETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQE 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQI 208 + GI L V G + + TGTE+ F ++F ++++TL++R++EL+FLN ++I Sbjct: 120 YKKGIPQYDLKVIGESTH-TGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKI 178 Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 S+ D+R P Y+GGI+ +V++L+ +K + + Q DNI+++LA+++ND Sbjct: 179 SIEDQRGETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNITVELALQYNDS 238 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y NV FTNNI +GG H G + ALTR I +Y + + K S IG+D REG T+ Sbjct: 239 YATNVFSFTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILK-KDESFIGEDTREGLTA 297 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 ++S+K P+P+F QTK KL + EVR +V + L +L E+P AK I+ KVL AS Sbjct: 298 IISVKHPNPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDKVLMASRA 357 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+A++ TRRK LD+ KLADC R P++SE+++VEGDSAGGSAKQGR Q Sbjct: 358 RIAARKAKEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQGRDSAFQ 417 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGK+LNVE+AR DK LS++EI ++I A GTGIG+D FDI K RYHKI+IMTDADV Sbjct: 418 AILPLRGKVLNVEKARLDKALSNKEILSMIQAFGTGIGED-FDITKARYHKIVIMTDADV 476 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTL+LTF FR M LI G++Y+ +PPLY + GK ++YV DEE L L Sbjct: 477 DGAHIRTLMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVVLEQMGG 536 Query: 569 SEEIELF 575 I+ + Sbjct: 537 RPAIQRY 543 >gi|39938984|ref|NP_950750.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M] gi|39722093|dbj|BAD04583.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M] Length = 671 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 267/673 (39%), Positives = 389/673 (57%), Gaps = 43/673 (6%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+ADSIQIL+GL+AV+KRP MYIG T + GLHH+++E++DN+IDE+L G+A+ IT+ Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANKITLE 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + +VSDNGRGIP D+H + G A E I+T LHAGGKF+ SYKVSGGLHGVG SV Sbjct: 61 ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDNSSYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186 VNALS+W + I IY + GI +PL V G N GT + FL +IF Sbjct: 121 VNALSTWFTVEIHLNKQIYFQKYEKGIAVSPLEVIGKT-NKRGTTIQFLADPEIFQETTI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK-PLMQ 245 +N+DTL+ R+++LSFLN +++++ DKR + ++ G++ ++ +++ K Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLNIADKRYEKETVFNFCHEKGLQDYLDFINTSHKQTPFH 239 Query: 246 SPIRIQGSRDNISIDLAMRWND--------------------------GYHENVLCFTNN 279 ++ ++ ++ + ++ + F NN Sbjct: 240 EIFYLEKEFQKLAFEIVFEYTTKIRPPKKDAQGNEIEEKEGKDAIPNYTQNQKIFSFVNN 299 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IP +GGTH G + AL R I+ Y K F K ++ +D EG T+++S+K P+F Sbjct: 300 IPTHEGGTHEEGFKLALNRVISKYA-KEFNLLKKDEHLLSEDILEGITAIISLKHQYPQF 358 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EVR + + L +L E+P +++ I+ K L ++ R AA+RAR++ Sbjct: 359 EGQTKAKLANTEVRQITSQLFGEFLEKYLLENPQDSRKIIDKCLLSANARLAAKRAREVV 418 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 R K LD KLADC +DP SEL++VEGDSAGGSAKQGR QAILPLRGK+LN Sbjct: 419 RNK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLN 477 Query: 460 VERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 VE++ K+L+++EI +LI A+G GI F+++K+RYHKIIIMTDADVDGAHIRTL Sbjct: 478 VEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNMDKIRYHKIIIMTDADVDGAHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELF 575 LLTFFFR LI G++Y +PPLY +GK + +Y DE++ + + +L + Sbjct: 538 LLTFFFRHFRKLIEKGYIYFARPPLYKYQKGKGAPKYFYDEKAKQTFATKNNLKDG-FQR 596 Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 G ++ N L +D + K + E+DQ N+ + Sbjct: 597 YKGLGEMNPNQLWET-----TMDPETRTLLKASLKDALNALSDEEAL-MEADQTFNMLMG 650 Query: 636 SKLANRLNFIAEK 648 K+ R NFI EK Sbjct: 651 EKVLPRKNFILEK 663 Score = 140 bits (354), Expect = 7e-31, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 10/77 (12%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEVE 786 QRYKGLGEMN +QLWETT++P+TR+LL+ + DA +AD F+ LMG++V Sbjct: 595 QRYKGLGEMNPNQLWETTMDPETRTLLKASLKDALNALSDEEALMEADQTFNMLMGEKVL 654 Query: 787 PRREFIQENSLPSALDI 803 PR+ FI E +L + LD+ Sbjct: 655 PRKNFILEKALEADLDV 671 >gi|172056050|ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15] gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15] Length = 643 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 297/649 (45%), Positives = 418/649 (64%), Gaps = 13/649 (2%) Query: 1 MSDNIQ---NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 MS++ Y AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSNHEDMELEQGYGADQIQVLEGLEAVRKRPGMYIGST-ASKGLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I VT+ S V DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVS Sbjct: 60 AGYCDTIKVTIEPGNSILVEDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L++ +KR +Y ++ G+ L + G +TGT + F P Sbjct: 120 GGLHGVGASVVNALSTKLEVFVKRNEKLYYQAYHRGVPAADLEIIG-TSEETGTMIRFFP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF +++YD L RLREL+FLN + I + D R+ EP + Y+GGI+++V +L Sbjct: 179 DDEIFQETLEYDYDLLATRLRELAFLNKGLTIEITDDRADEPITRSFHYEGGIKSYVEHL 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 +R K+ + + P+ + G+RD I +++A+++NDG+ N+ FTNNIP +GGTH +G ++AL Sbjct: 239 NRSKEVVHEEPVYVHGNRDGIEVEVALQYNDGFAANIYSFTNNIPTHEGGTHETGFKTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y +K K+ ++ G+D REG T+++SIK P+P+F QTK KL +S+ R+ Sbjct: 299 TRVINDYAKKFGLMKEADGTLSGEDVREGMTAIVSIKHPNPQFEGQTKTKLGNSDARTAT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ + ++ E+P A+ IV+K + AS R AA+RAR+LTRRKGVL+++SLPGKLAD Sbjct: 359 DTLFSSAFEQFMMENPTSARAIVEKGMMASRARMAAKRARELTRRKGVLEVSSLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS RD SE+++VEGDSAGGSAK GR R QAILP+RGKILNVE+AR DK+L + EI T Sbjct: 419 CSSRDATISEIYIVEGDSAGGSAKSGRDRHFQAILPIRGKILNVEKARLDKILGNNEIRT 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITALGT IG + F+I K RYHK+IIMTDADVDGAHIRTLLLTFF+R M L+ +G++YI Sbjct: 479 IITALGTSIGSE-FNIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDDAL 595 +PPLYGI +GK++ YV +E L + L + G + L Sbjct: 538 AQPPLYGIKQGKNITYVHNERELNEALAALPENARYDIQRYKGLGEMDPEQLWET----- 592 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + IE + + + + + S N Sbjct: 593 TMDPSGRQMLRVELQDAIEADEVFDILMGDQVEPRRDFIQSHAHYVKNL 641 Score = 167 bits (422), Expect = 9e-39, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 8/201 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + + +++ + + ++ ++ Sbjct: 447 RHFQAIL--PIRGKILNVEKARLDKILGNNEIRTIITALGTSIGSEFNIEKARYHKVIIM 504 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---L 723 V + F + + + + + + + L L Sbjct: 505 TDADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPPLYGIKQGKNITYVHNERELNEAL 564 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 + R +QRYKGLGEM+ QLWETT++P R +LRV++ DA +AD++F LMGD Sbjct: 565 AALPENAR--YDIQRYKGLGEMDPEQLWETTMDPSGRQMLRVELQDAIEADEVFDILMGD 622 Query: 784 EVEPRREFIQENSLPS-ALDI 803 +VEPRR+FIQ ++ LDI Sbjct: 623 QVEPRRDFIQSHAHYVKNLDI 643 >gi|172039685|ref|YP_001799399.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109] gi|171850989|emb|CAQ03965.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109] Length = 699 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 275/649 (42%), Positives = 383/649 (59%), Gaps = 43/649 (6%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + YDA SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA ++ Sbjct: 25 KPGDYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYAKKVS 83 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS VSD+GRGIP ++H G +V+MT+LHAGGKF+ SY VSGGLHGVG+ Sbjct: 84 VTLKEDGSVEVSDDGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVGI 142 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ ++ RI R+G + F+N + +V G +GT F P +IF Sbjct: 143 SVVNALSTRVETRIVRDGFEWYQEFVNAVPQE--LVQGKKKRGSGTTQRFWPDPEIFETV 200 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----------------------- 222 +FN+DT+ RL+E++FLN + I+L D+R Sbjct: 201 EFNFDTVAKRLQEMAFLNKGLTITLTDERPEAIEAEDPEEQLEDLTEQAEAPKSAEERQA 260 Query: 223 --------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 Y G++ +V++++R K+P+ + + ++ +++A++WNDG Sbjct: 261 EEEAKKKKGPRTKTYHYPEGLKDYVAFINRKKQPIHPTIVSFDAKGEDHEVEVALQWNDG 320 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y ++V F N I +GGTH G R+A+T I Y K+ ++ GDD REG + Sbjct: 321 YQQSVHTFANTINTFEGGTHEEGFRAAMTSLINRYARDQKLLKEKDSNLTGDDVREGLAA 380 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+++ DP+F QTK KL ++E+R V+ +N+ LS WL+ +P EAK+IV+K + ++ Sbjct: 381 VISVRVGDPQFEGQTKTKLGNTEIRGFVQRAINEHLSDWLDANPAEAKVIVQKAVASAHA 440 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+ARDL RRK D+ LPGKLADC +DP KSEL++VEGDSAGGSAK GR Q Sbjct: 441 RQAARKARDLVRRKSASDMGGLPGKLADCRSKDPIKSELYVVEGDSAGGSAKSGRDSMYQ 500 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILNVE+AR D++L + E+ +ITALGTGI D FDINKLRYHKI++M DADV Sbjct: 501 AILPLRGKILNVEKARMDRVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIVLMADADV 559 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ G++Y+ +PPLY + GK Y + ++ L Sbjct: 560 DGQHIATLLLTLLFRLMRPLVEGGYVYLAQPPLYKLKWGKGEPGYAFSDRERDEQLKKGL 619 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 D N + E A Sbjct: 620 EEGRKIDTDDGIQRYKGLGEMNPKELWETTMDPTTRTLRQVSLEDAEAA 668 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 8/83 (9%) Query: 727 FSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 GRK G +QRYKGLGEMN +LWETT++P TR+L +V + DA AD+LFS LM Sbjct: 619 LEEGRKIDTDDG--IQRYKGLGEMNPKELWETTMDPTTRTLRQVSLEDAEAADELFSILM 676 Query: 782 GDEVEPRREFIQENSLPSA-LDI 803 GD+V RR FI N+ LD+ Sbjct: 677 GDDVVARRSFITRNARDVRFLDV 699 >gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87] gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87] Length = 644 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 299/639 (46%), Positives = 415/639 (64%), Gaps = 5/639 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 7 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 65 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 66 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 125 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 126 GVGSSVVNALSQDLEVYVYRNDTIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGEI 184 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +NY+TLQ R+REL+FLN +QI+L D+R E RE + Y+GGI+++V L+ +K Sbjct: 185 FTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEGREDSYHYEGGIKSYVELLNENK 244 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL + PI I ++D+I +++A+++N GY N+L + NNI +GGTH G + ALTR + Sbjct: 245 EPLHEEPIYIHQTKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRIL 304 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY +S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 305 NSYGIQSKIIKEDKDKLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLF 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +L EHP +IIV+K + AS R AA++AR++TRRK LD++SLPGKLADCS + Sbjct: 365 AEYFERFLFEHPAVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 424 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +ITA Sbjct: 425 NPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 484 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PP Sbjct: 485 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 543 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY +T+GK YV ++ L+ + + G ++ + L + Sbjct: 544 LYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSM 603 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L D + ++ V + ++ + L Sbjct: 604 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 642 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 466 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 525 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739 R IE Y+ I L K + LD + + + S+ RY Sbjct: 526 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 580 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETT+NP+ RS+L+V++ DA AD F LMGD VE RR+FI++N++ + Sbjct: 581 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 640 Query: 800 ALD 802 LD Sbjct: 641 NLD 643 >gi|269977746|ref|ZP_06184706.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1] gi|269934050|gb|EEZ90624.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1] Length = 671 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 269/604 (44%), Positives = 365/604 (60%), Gaps = 27/604 (4%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD YDA I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G Sbjct: 1 MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VTL DGS V DNGRGIP H E EV+MT LHAGGKF SY VSGG Sbjct: 60 YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS+ + +KR+G + + F NG + G +TGTE F P Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218 IF +F+Y+TL+ R ++++FLN ++I++ D+R Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGH 239 Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275 R ++ Y+ G+ +VS+++ K + + I + D++++++A++W Y E++ Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G RSALT + Y K ++ GDDCREG T+V+S+K+ Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 P+F QTK KL ++E R+ V+ V L W + HP EAK I+ K A + R+AAR+A Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD + E+F+VEGDSAGGSA GR +QAILPLRG Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR DK L ++EI LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI G +++ PPLY + + ++ L++ L L Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598 Query: 576 CDSK 579 + Sbjct: 599 KEGG 602 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P R L +V + +A+ AD+ F+ LMG++V RR FIQ N Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 663 AQDVRFLDI 671 >gi|331004661|ref|ZP_08328123.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167] gi|330409588|gb|EGG89028.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167] Length = 637 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 281/585 (48%), Positives = 399/585 (68%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ YDA IQIL+GL+AV+ RP MYIG GLHH++YE++DN++DE+L G+ I V Sbjct: 2 STEYDASQIQILEGLEAVRVRPGMYIGSISS-RGLHHLVYEIVDNSVDEALAGFCTEIKV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV DNGRGIP D+ ++ G A EV+ T LHAGGKF YK SGGLHGVG S Sbjct: 61 KINEDNSITVRDNGRGIPVDIQQKAGKPALEVVFTILHAGGKFGGGGYKTSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS+WL +++ ++ IY M F G + + V G ++GTEV+FLP + IF Sbjct: 121 VVNALSTWLDVKVYKDCKIYHMRFEKGKVVEDIKVIGECSPEESGTEVSFLPDAGIFEET 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +++D L+ RLRE +FL +++I+LIDKR+ + + Y+GGI+ FV+YL++ K P+ + Sbjct: 181 VYDFDILKVRLRETAFLTKALKITLIDKRAEKREM-SFHYEGGIKEFVTYLNKSKSPIYE 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G ++ + +++AM+ ND Y E++ F NNI +GGTHLSG ++ALT+ Y Sbjct: 240 DVIYCEGIKEKVVVEVAMQHNDTYTESIYTFVNNINTPEGGTHLSGFKNALTKTFNEYAR 299 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K+++ ++ G+D REG +++S+K+ DP+F QTK+KL +SE ++ V + V++ L+ Sbjct: 300 NNKLLKENEENLSGEDIREGLVAIISVKIQDPQFEGQTKQKLGNSEAQTAVNAVVSEQLT 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+I +K + A R AAR+ARDLTRRK LD SLPGKLADCS ++P++ Sbjct: 360 YFLEQNPGVAKLISEKAITAQRARAAARKARDLTRRKSALDGMSLPGKLADCSSKNPEEC 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSAGGSAK R R+ QAILPLRGKILNVE+AR DK+ S+ EI +ITA GTGI Sbjct: 420 EIFIVEGDSAGGSAKSARKRDTQAILPLRGKILNVEKARLDKIYSNAEIKAMITAFGTGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRY+KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ +PPLY + Sbjct: 480 QKD-FDISKLRYNKIIIMTDADVDGAHIDTLMLTFIYRFMPELIKEGHVYLAQPPLYKLE 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y +E L++ L + G + L Sbjct: 539 KNKKVWYAYSDEELDNILKEVGRDQNNKIQRYKGLGEMDAEQLWE 583 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ LD I + + +QRYKGLGEM+A QLWETT++P+ R Sbjct: 532 PPLYKLEKNKKVWYAYSDEELDNILKEVGRDQNNKIQRYKGLGEMDAEQLWETTMDPERR 591 Query: 761 SLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L +V + D+ + D F+ LMGD+V PRREFI+ N+ LDI Sbjct: 592 VLKKVVLDDSMLSETDITFNTLMGDQVAPRREFIEANAKYVSNLDI 637 >gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1] gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1] Length = 643 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 300/639 (46%), Positives = 415/639 (64%), Gaps = 5/639 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 DQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F DI Sbjct: 125 GVGSSVVNALSQDLEVYVYRNETIYHQAYKKGVPQFDLKEIGET-DQTGTAIRFKADGDI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ +NY+TLQ R+REL+FLN +QI+L D+R E RE + Y+GGI+++V L+ +K Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDEREEEVREDSYHYEGGIKSYVELLNENK 243 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +P+ Q PI I ++D+I +++A+++N GY N+L + NNI +GGTH G + ALTR + Sbjct: 244 EPIHQEPIYIHQTKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRVL 303 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY +S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 NSYGTQSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLF 363 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +IIV+K + AS R AA++AR++TRRK LD++SLPGKLADCS + Sbjct: 364 SEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSK 423 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +P +SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +ITA Sbjct: 424 NPDESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITA 483 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +PP Sbjct: 484 FGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPP 542 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKIDK 599 LY +T+GK YV ++ L+ + + G ++ + L + Sbjct: 543 LYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSISRYKGLGEMNADQLWETTMNPEHRSM 602 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L D + ++ V + ++ + L Sbjct: 603 LQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANL 641 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 24/183 (13%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 465 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 524 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGI------SMQRY 739 R IE Y+ I L K + LD + + + S+ RY Sbjct: 525 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWSISRY 579 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETT+NP+ RS+L+V++ DA AD F LMGD VE RR+FI++N++ + Sbjct: 580 KGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYA 639 Query: 800 ALD 802 LD Sbjct: 640 NLD 642 >gi|306817507|ref|ZP_07451251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] gi|304649731|gb|EFM47012.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus mulieris ATCC 35239] Length = 671 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 268/604 (44%), Positives = 364/604 (60%), Gaps = 27/604 (4%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD YDA I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G Sbjct: 1 MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VTL DGS V DNGRGIP H E EV+MT LHAGGKF SY VSGG Sbjct: 60 YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS+ + +KR+G + + F NG + G +TGTE F P Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEP 218 IF +F+Y+TL+ R ++++FLN ++I++ D+R Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADADADSPKVGH 239 Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275 R ++ Y+ G+ +V +++ K + + I + D++++++A++W Y E++ Sbjct: 240 RHVSYCYENGLHDYVRFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G RSALT + Y K ++ GDDCREG T+V+S+K+ Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 P+F QTK KL ++E R+ V+ V L W + HP EAK I+ K A + R+AAR+A Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD + E+F+VEGDSAGGSA GR +QAILPLRG Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR DK L ++EI LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI G +++ PPLY + + ++ L++ L L Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598 Query: 576 CDSK 579 + Sbjct: 599 KEGG 602 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P R L +V + +A+ AD+ F+ LMG++V RR FIQ N Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 663 AQDVRFLDI 671 >gi|229086165|ref|ZP_04218383.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44] gi|228697145|gb|EEL49912.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-44] Length = 654 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 264/663 (39%), Positives = 398/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVVDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GN+YE F N G+ L G +GT + F P Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNVYEQRFENGGVPVTTLEKIGKTK-QSGTTMHFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++I++ D+R+ E Y+ GIEAFV+YL+ Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIKDERND--LEDVFHYETGIEAFVAYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFAGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSMLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++VKK + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFSVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341] gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341] Length = 638 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 7/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Q Y+AD IQ+L+GL+AV+ RP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MVEKKQIQEYNADQIQVLEGLEAVRVRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV + V DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 CDTITVAIEKGNWIRVEDNGRGIPVDIQEQTGKPALEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ L+ + R+G I+ M F G + + V G+ + TGT + F + Sbjct: 120 HGVGASVVNALSTNLEASVHRDGKIHTMKFERGDVVQGITVVGNT-DRTGTTIRFKADPE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF ++YD L+ R+REL+FLN + I L D+R + +E T +Y+GG+ +V L+ + Sbjct: 179 IFQETTVYDYDILRTRIRELAFLNKGITIILKDEREGQEKEETFYYEGGLLEYVEMLNEN 238 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L I + G D ++++M++N GY NVL + NNI +GGTH SG ++ALTR Sbjct: 239 KDALH-EAIYVHGEMDGKEVEISMQYNTGYSSNVLSYANNINTHEGGTHESGFKTALTRI 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY +K+ KDK S+ GDD REG +++SIK P+P+F QTK KL +SE+ ++ Sbjct: 298 INSYGKKNK-LIKDKESLTGDDVREGLVAIISIKHPNPQFEGQTKTKLGNSEMSTITNKL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ L +L E+P AKIIV+K L AS R AA++AR+ TRRK L+ +LPGKLADCS Sbjct: 357 FSEELDRFLLENPKIAKIIVEKGLQASRARIAAKKARESTRRKNALEFTNLPGKLADCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D + ELFLVEGDSAGGSAK GR+ + QAILPL+GKILNVE+ R DK+L++ E+ +LIT Sbjct: 417 KDAAECELFLVEGDSAGGSAKLGRNSKFQAILPLKGKILNVEKVRIDKVLANDEVRSLIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG+ +I+KLRYHKI+IMTDADVDG+HIRTLLLTFFFR M LI G++YI +P Sbjct: 477 AIGMGIGETL-NIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRYMRELIDEGYVYIARP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLYG+ GK Y EE L+ + + ++ G ++ +L + Sbjct: 536 PLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRYKGLGEMNAEELWD 586 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V ++ + + I ++ + +V V + Sbjct: 454 ILNVEKVRIDKVLANDEVRSLITAIGMGIGETLNIDKLRYHKIVIMTDADVDGSHIRTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-IGRKGISMQRY 739 F F + I + + L + L I G K ++QRY Sbjct: 514 LTFFFRYMRELIDEGYVYIARPPLYGLKVGKKEFYCHTEEELKQNIEEHAGDKKYTVQRY 573 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA +LW+TT++P+ R + +V I DA +AD F LMG++VEPRR+FI++N+L Sbjct: 574 KGLGEMNAEELWDTTMDPEHRLMYQVSIDDAQRADAAFDTLMGEKVEPRRKFIEDNALNV 633 Query: 800 -ALDI 803 LDI Sbjct: 634 INLDI 638 >gi|31791182|ref|NP_853675.1| DNA gyrase subunit B [Mycobacterium bovis AF2122/97] gi|121635888|ref|YP_976111.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635915|ref|YP_976138.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988388|ref|YP_002643055.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|260184858|ref|ZP_05762332.1| DNA gyrase subunit B [Mycobacterium tuberculosis CPHL_A] gi|289445530|ref|ZP_06435274.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A] gi|289572581|ref|ZP_06452808.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85] gi|31616767|emb|CAD92867.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium bovis AF2122/97] gi|121491535|emb|CAL69989.1| DNA gyrase subunit B gyrB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491562|emb|CAL70019.1| Dna gyrase subunit B gyrB (DNA topoisomerase) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771501|dbj|BAH24307.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172] gi|289418488|gb|EFD15689.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A] gi|289537012|gb|EFD41590.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85] Length = 714 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 268/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 44 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P ++K++V K + ++ R AA Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQARIAA 459 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714 >gi|15607147|ref|NP_214519.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Rv] gi|148659762|ref|YP_001281285.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|215405989|ref|ZP_03418170.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|218755721|ref|ZP_03534517.1| DNA gyrase subunit B [Mycobacterium tuberculosis GM 1503] gi|253796920|ref|YP_003029921.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435] gi|289552255|ref|ZP_06441465.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605] gi|289747775|ref|ZP_06507153.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|289760102|ref|ZP_06519480.1| subunit B gyrB [Mycobacterium tuberculosis T85] gi|289764120|ref|ZP_06523498.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503] gi|294995613|ref|ZP_06801304.1| DNA gyrase subunit B [Mycobacterium tuberculosis 210] gi|298527403|ref|ZP_07014812.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A] gi|308373866|ref|ZP_07433901.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006] gi|474435|emb|CAA55486.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|1552558|emb|CAB02426.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium tuberculosis H37Rv] gi|148503914|gb|ABQ71723.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|253318423|gb|ACT23026.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435] gi|289436887|gb|EFD19380.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605] gi|289688303|gb|EFD55791.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987] gi|289711626|gb|EFD75642.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503] gi|289715666|gb|EFD79678.1| subunit B gyrB [Mycobacterium tuberculosis T85] gi|298497197|gb|EFI32491.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A] gi|308343895|gb|EFP32746.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006] gi|326905764|gb|EGE52697.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis W-148] gi|328456711|gb|AEB02134.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 4207] Length = 714 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 44 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714 >gi|260203142|ref|ZP_05770633.1| DNA gyrase subunit B [Mycobacterium tuberculosis K85] Length = 675 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 269/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SG Sbjct: 60 GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +F +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + T Y GG+ FV +++R K + S + G +++AM+WN G Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G RSALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P ++K++V K + ++ Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDSKVVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG HI TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675 >gi|167969468|ref|ZP_02551745.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra] gi|215413859|ref|ZP_03422524.1| DNA gyrase subunit B [Mycobacterium tuberculosis 94_M4241A] gi|215448278|ref|ZP_03435030.1| DNA gyrase subunit B [Mycobacterium tuberculosis T85] gi|254548933|ref|ZP_05139380.1| DNA gyrase subunit B [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297632473|ref|ZP_06950253.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN 4207] gi|297729442|ref|ZP_06958560.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN R506] gi|313656771|ref|ZP_07813651.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN V2475] gi|158513716|sp|A5TY73|GYRB_MYCTA RecName: Full=DNA gyrase subunit B gi|158517773|sp|P0C5C5|GYRB_MYCTU RecName: Full=DNA gyrase subunit B gi|323717344|gb|EGB26549.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CDC1551A] Length = 675 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 270/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SG Sbjct: 60 GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +F +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + T Y GG+ FV +++R K + S + G +++AM+WN G Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G RSALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG HI TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675 >gi|302864517|ref|YP_003833154.1| DNA gyrase subunit B [Micromonospora aurantiaca ATCC 27029] gi|315500827|ref|YP_004079714.1| DNA gyrase, b subunit [Micromonospora sp. L5] gi|302567376|gb|ADL43578.1| DNA gyrase, B subunit [Micromonospora aurantiaca ATCC 27029] gi|315407446|gb|ADU05563.1| DNA gyrase, B subunit [Micromonospora sp. L5] Length = 648 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 267/548 (48%), Positives = 364/548 (66%), Gaps = 10/548 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V Sbjct: 6 NKKYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 64 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG V+DNGRG P DLH + EV +T LHAGGKF+ K+Y VSGGLHGVGVS Sbjct: 65 VLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + I ++G ++ + + PL G A + TG+ V+F P D+F D Sbjct: 125 VVNALSTRMAVEIHKDGFVWRQQYHHSKP-TPLEK-GEATDRTGSAVSFWPDPDVFETVD 182 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ T+ RL+E++FL + I L+D+R + RE+T Y+GGI FV +L+ K Sbjct: 183 FDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIADFVRHLNASKS 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ ++ + +S+++AM+WN+ Y E+V F NNI +GGTH G R+ALT + Sbjct: 243 PIHKTVVEFGAEETGMSVEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAALTSVVN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + G+D REG +++S+K+ DP+F QTK KL ++ V+ V+ N Sbjct: 303 RYGA-EKKLLKGDERLSGEDIREGLAAIISVKLTDPQFEGQTKTKLGNTPVKGFVQRVCN 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L W + +P EAKII++K A+ R AA++AR L RRK +L+ S+PGKLADC D Sbjct: 362 ESLVDWFDRNPAEAKIIIQKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTD 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++SE+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR D++L + E+ LITAL Sbjct: 422 PRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI D FDI KLRYHKI++M DADVDG HI+TLLLT FR M L+ G +Y+ PPL Sbjct: 482 GTGI-HDDFDIEKLRYHKIVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540 Query: 542 YGITRGKS 549 Y I K Sbjct: 541 YKIKWNKK 548 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 640 AKDVRFLDI 648 >gi|307699824|ref|ZP_07636875.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16] gi|307614862|gb|EFN94080.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16] Length = 671 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 269/604 (44%), Positives = 365/604 (60%), Gaps = 27/604 (4%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MSD YDA I +L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DE+L G Sbjct: 1 MSDFEKPEEHYDAADITVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDEALAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y D I VTL DGS V DNGRGIP H E EV+MT LHAGGKF SY VSGG Sbjct: 60 YCDHIEVTLQADGSVKVCDNGRGIPVAEHPTEHRPTVEVVMTILHAGGKFGGSSYAVSGG 119 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG+SVVNALS+ + +KR+G + + F NG + G +TGTE F P Sbjct: 120 LHGVGISVVNALSTKVLTTVKRDGYEWHVEFGNGGQVTKPLERGKETTETGTEQIFYPDP 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE---------------------P 218 IF +F+Y+TL+ R ++++FLN ++I++ D+R Sbjct: 180 AIFETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTDEGDFVTGDADVDADSPKIGH 239 Query: 219 REITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQG-SRDNISIDLAMRWNDGYHENVLC 275 R ++ Y+ G+ +VS+++ K + + I + D++++++A++W Y E++ Sbjct: 240 RHVSYCYENGLHDYVSFINSTKKSEVVHPEVIDFEATQDDSMALEIALQWTGAYSESIYT 299 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G RSALT + Y K ++ GDDCREG T+V+S+K+ Sbjct: 300 YANTINTTEGGTHEEGFRSALTSLMNKYARSLGVLKDKDENLSGDDCREGLTAVISVKLR 359 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 P+F QTK KL ++E R+ V+ V L W + HP EAK I+ K A + R+AAR+A Sbjct: 360 TPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPTEAKAILLKAQSAQIARNAARKA 419 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD + E+F+VEGDSAGGSA GR +QAILPLRG Sbjct: 420 RDATRRKTALDSFSMPGKLRDCSSRDASQCEIFIVEGDSAGGSAVAGRDPAHQAILPLRG 479 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR DK L ++EI LITA GTGIG+D FD+ KLRY+KI++M DADVDG HI T Sbjct: 480 KILNVEKARLDKALDNKEIQALITAFGTGIGED-FDLGKLRYYKIVLMADADVDGQHITT 538 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI G +++ PPLY + + ++ L++ L L Sbjct: 539 LLLTLLFRYMKPLIEEGHVFLATPPLYRLKWSNRPHQFVYSDKEKEKLLDVGLEGGARLP 598 Query: 576 CDSK 579 + Sbjct: 599 KEGG 602 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P R L +V + +A+ AD+ F+ LMG++V RR FIQ N Sbjct: 603 IQRYKGLGEMDPKELWETTMDPQVRLLKQVTMDEAASADETFALLMGEDVASRRSFIQRN 662 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 663 AQDVRFLDI 671 >gi|269837196|ref|YP_003319424.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745] gi|269786459|gb|ACZ38602.1| DNA gyrase, B subunit [Sphaerobacter thermophilus DSM 20745] Length = 638 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 291/591 (49%), Positives = 401/591 (67%), Gaps = 7/591 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + + YDA SIQ+L+GL+AV++RP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAEALLSK-YDASSIQVLEGLEAVRRRPGMYIGTTD-IRGLHHLVYEIVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D + TV DNGRGIP D+H + G SA EVIMT LHAGGKF YKVSGGL Sbjct: 59 CDRIDVTIHPDSAVTVVDNGRGIPVDVHPKLGKSALEVIMTVLHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS W+ + ++++G +Y + G P+ G ++ GT+ TF P + Sbjct: 119 HGVGASVVNALSEWVVVEVRKDGVLYRQRYERGRPVTPVEQVGEVGPDEHGTKTTFKPDA 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF ++N+DTL R RE+++L +QIS D+R+ GGI +FV +L+R Sbjct: 179 TIFESLNYNFDTLMQRFREIAYLTKGLQISFRDERTDREMSFYF--DGGIVSFVRHLNRR 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 ++ L P + + I++A+++NDG E+ F NNI DGGTHL+G ++ALTR Sbjct: 237 RQVLQPRPFSVSREVNGNLIEVALQYNDGVAESTYTFANNINTIDGGTHLTGFKAALTRT 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y ++ K+ ++ G+D REG T+++S+K+P+P+F QTK +L ++EV V+S Sbjct: 297 INDYARRAGFLKETDENLSGEDVREGLTAIVSVKLPEPQFEGQTKGRLGNAEVAGQVQSV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 VND L+ +L E+P A+ IV K + A+ R+AAR+AR+L +RKG LD SLPGKLADC E Sbjct: 357 VNDALATYLNENPQAARRIVDKCVTAARAREAARKARELVQRKGALDTFSLPGKLADCQE 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP ++EL++VEGDSAGGSAKQGR R QA+LPLRGKILNVE+AR D+ML ++EI LIT Sbjct: 417 RDPARAELYIVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVEKARLDRMLQNEEIRALIT 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGT IG D FD +KLRYH+II+MTDADVDGAHIRTLLLTFFFR + SLI +G LYI +P Sbjct: 477 ALGTSIG-DQFDPSKLRYHRIILMTDADVDGAHIRTLLLTFFFRHLESLIVDGRLYIAQP 535 Query: 540 PLYGITRGKSLQYVKDEESLEDYLIN-QSLSEEIELFCDSKGVISKNDLRN 589 PLY + GK + YV + ++ + + G ++ L Sbjct: 536 PLYRLQSGKEIHYVYSDAQRDEIIAAGGPNKTWEIVRYKGLGEMNPEQLWE 586 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++ + + + S ++ V + Sbjct: 454 ILNVEKARLDRMLQNEEIRALITALGTSIGDQFDPSKLRYHRIILMTDADVDGAHIRTLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG--RKGISMQR 738 F F I R+ + L + + D I + G K + R Sbjct: 514 LTFFFRHLESLIVDGRLYIAQPPLYRLQSGKEIHYVYSDAQR-DEIIAAGGPNKTWEIVR 572 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P+ R+LL+V + DA +AD+ F LMG V PRR FIQ ++ Sbjct: 573 YKGLGEMNPEQLWETTMDPENRTLLQVTLEDAVRADETFDMLMGSAVPPRRRFIQMHARE 632 Query: 799 S-ALDI 803 LD+ Sbjct: 633 VQNLDV 638 >gi|291519486|emb|CBK74707.1| DNA topoisomerase IV subunit B [Butyrivibrio fibrisolvens 16/4] Length = 641 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 245/598 (40%), Positives = 345/598 (57%), Gaps = 17/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +YD SI +L+GL+AV+KRP MYIG T GL+H+IYE++DN++DE L G Sbjct: 1 MAKKV---TYDESSIAVLEGLEAVRKRPGMYIGSTSR-KGLNHLIYEIVDNSVDEHLAGE 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTL DGSCTV DNGRGIP +H + G+ AA ++ + LHAGGKF+ YK SGGL Sbjct: 57 CDTIYVTLEKDGSCTVEDNGRGIPVGMHAK-GVPAARLVFSTLHAGGKFDDSVYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTF 175 HGVG SVVNALS ++ + I R+G ++ + G+ L N GT++ F Sbjct: 116 HGVGSSVVNALSEYMVVDISRDGFVHHDRYERGVPTEKLVDGLLPKISKT-NKHGTKINF 174 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LP ++IF F D ++ RL E ++LN + I+ D R P IT GI+ FV Sbjct: 175 LPDAEIFEKTYFKEDEVKSRLHETAYLNPGLTINYADLRGETPEYITYHEPEGIKGFVKE 234 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 +++ + L + G D++ +++A ++ + + EN+L F NNI +GGTH++G ++ Sbjct: 235 INKTAETLH-DVVYFSGKCDDVELEVAFQYCNEFKENILGFCNNIYNSEGGTHITGFKTV 293 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT I +Y + K + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 294 LTTVINNYARELGILKDKDANFTGADVRNGITAIVSIKHPDPRFEGQTKTKLDNPDASKA 353 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 + D + + + K I+ ++ +R + +A+ K GKLA Sbjct: 354 TQKVCQDEFVLFFDRNLETLKAIISCAEKSAKIRKSEEKAKTNLLTKQKFSFD-QNGKLA 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +C RD +K E+F+VEGDSAGGSAK+ R+R QAI+P+RGKILNVE+A DK+L++ EI Sbjct: 413 NCESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIMPIRGKILNVEKASMDKVLANAEIK 472 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 TLI A G G + + FDI KLRY KI+IM DADVDGAHI TLLLTFF+R MP LI G Sbjct: 473 TLINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTFFYRFMPELIREG 532 Query: 533 FLYIIKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY I +Y+ D+ +LE Y G + L Sbjct: 533 HVYIAMPPLYKAIPTKGEEEYLYDDVALERYRKKMEGKTFTLQRYKGLGEMDAEQLWE 590 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 11/255 (4%) Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 E++ + L Q S + + FI + K + + Sbjct: 391 EKAKTNLLTKQKFSFDQNGKLANCESRDAEKCEIFIVEGDSAGGSAKKARNRMYQAIM-- 448 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQF 675 + + N E V +++ +N + + + + + +I + Sbjct: 449 PIRGKILNVEKASMDKVLANAEIKTLINAFGCGFSEGYGNDFDITKLRYDKIV--IMADA 506 Query: 676 VLEGSSIFSFGSKY-KRIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFS 728 ++G+ I + + R I E ++ I ++ G++ + +L Sbjct: 507 DVDGAHISTLLLTFFYRFMPELIREGHVYIAMPPLYKAIPTKGEEEYLYDDVALERYRKK 566 Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPR 788 + K ++QRYKGLGEM+A QLWETTL+P+ R L V+I D A ++ LMG +V PR Sbjct: 567 MEGKTFTLQRYKGLGEMDAEQLWETTLDPERRKLKLVEIEDGLMASEVTELLMGSDVAPR 626 Query: 789 REFIQENSLPSALDI 803 ++FI +++ + LD+ Sbjct: 627 KQFIYKHAKEAELDV 641 >gi|462227|sp|P34031|GYRB_SPICI RecName: Full=DNA gyrase subunit B gi|49348|emb|CAA79523.1| DNA gyrase subunit B [Spiroplasma citri] gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B Length = 640 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 266/589 (45%), Positives = 389/589 (66%), Gaps = 10/589 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+++SIQIL+GL+A++KRP MYIG T+ GLHH+++E++DN+IDE L +A+ I + Sbjct: 3 DNYNSESIQILEGLEAIRKRPGMYIGATNA-RGLHHLVWEIVDNSIDEVLANFANKIKII 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN D S TV DNGRGIP ++H + +S E + T LHAGGKF+ +YK+SGGLHGVG SV Sbjct: 62 LNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VNALS +LK+ +++ Y M F N G + P+ GS +TGT VTFLP IF Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTS-ETGTTVTFLPDEKIFKETT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++ T+Q+R+++L FLN ++ISL+D + E + + + GI+ +V L++ + Sbjct: 181 IFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTPL 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 ++G DNI ++ +++ND Y EN+ F NNI +GGTH G R A+ R+I +Y Sbjct: 241 NDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYF 300 Query: 305 EK--SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 + + +K ++ DD +EG T ++SI+ P+P++ QT +KL++SEV+ +V + V Sbjct: 301 KNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVGK 360 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 GLS++L E+P +AK I++K+ + A+RA+++TRRK V+D SLPGKL+DC +D Sbjct: 361 GLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKDA 420 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K +EL++VEGDSAGGSAK GR+R+ QAILPLRGKILNVE+A+ K+ + EI ++ITALG Sbjct: 421 KIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALG 480 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 GI +D+F+ KLRY K+IIMTDADVDGAHIR LLLTFF+R M LI NG +YI +PPLY Sbjct: 481 AGI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLY 539 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 + ++YV + LE Y + G ++ L Sbjct: 540 KVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWE 588 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEMN QLWETT++P+ R LL+V + +A +A+ + + LMG+ VEPR++F Sbjct: 568 KNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKF 627 Query: 792 IQENSLPS-ALDI 803 I+EN+ LD+ Sbjct: 628 IRENAKYVKNLDV 640 >gi|254366465|ref|ZP_04982509.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem] gi|134151977|gb|EBA44022.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem] Length = 697 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 27 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 85 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 86 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 144 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 145 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 202 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 203 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 262 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 263 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 322 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 323 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 382 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 383 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 442 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 443 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 502 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 503 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 561 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 562 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 621 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 622 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 669 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 612 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 670 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLDV 697 >gi|308376284|ref|ZP_07438242.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008] gi|308351597|gb|EFP40448.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008] Length = 696 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 26 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 84 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 85 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 143 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 144 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 201 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 202 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 261 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 262 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 321 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 322 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 381 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 382 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 441 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 442 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 501 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 502 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 560 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 561 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 620 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 621 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 668 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 611 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 669 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 670 SILMGEDVDARRSFITRNAKDVRFLDV 696 >gi|238061919|ref|ZP_04606628.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149] gi|237883730|gb|EEP72558.1| DNA gyrase B subunit gyrB [Micromonospora sp. ATCC 39149] Length = 648 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 267/548 (48%), Positives = 366/548 (66%), Gaps = 10/548 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ D I V Sbjct: 6 KQEYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGHCDTIDV 64 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG V+DNGRG P DLH + EV +T LHAGGKF+ K+Y VSGGLHGVGVS Sbjct: 65 VLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGLHGVGVS 124 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + I + G ++ + N +PL G A + TG+ VTF P +D+F + Sbjct: 125 VVNALSTRMAVEIHKSGFVWRQQYANSKP-SPLEK-GEATDRTGSAVTFWPDADVFETVN 182 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241 F++ T+ RL+E++FLN + I L+D+R +PRE+T YKGGI FV +L+ K Sbjct: 183 FDFQTIYRRLQEMAFLNRGLTIHLLDERVSEGEEGKPREVTFCYKGGIADFVRHLNASKN 242 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ ++ + + +S+++AM+WN+ Y E+V F N I +GGTH G R+ALT + Sbjct: 243 PIHKTVVEFGAEEEGMSVEIAMQWNESYGESVYTFANTINTHEGGTHEEGFRAALTSVVN 302 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K + G+D REG +++S+K+ +P+F QTK KL ++ V+S V+ N Sbjct: 303 RYGADKK-LLKGDEKLSGEDIREGLAAIISVKLANPQFEGQTKTKLGNTPVKSFVQRVCN 361 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + L W + +P EAKII+ K A+ R AA++AR L RRK +L+ S+PGKLADC D Sbjct: 362 EWLVDWFDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLADCQSTD 421 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P++SE+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR D++L + E+ LITAL Sbjct: 422 PRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQALITAL 481 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI D FD+ KLRYHK+++M DADVDG HI+TLLLT FR M L+ G +Y+ PPL Sbjct: 482 GTGI-HDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVYLAAPPL 540 Query: 542 YGITRGKS 549 Y I K Sbjct: 541 YKIKWNKK 548 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAAVADELFSVLMGEDVEARRSFIQRN 639 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 640 AKDVRFLDI 648 >gi|240172095|ref|ZP_04750754.1| DNA gyrase subunit B [Mycobacterium kansasii ATCC 12478] Length = 675 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 269/654 (41%), Positives = 385/654 (58%), Gaps = 39/654 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA ++V L DG V+D+GRGIP +H GI +V+MT+LHAGGKF+ +Y +SG Sbjct: 60 GYAATVSVVLLEDGGVEVADDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L++ IKR+G+ + + L G+ TGT V F Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMG-LKQ-GAPTKKTGTTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 ++F +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 PNVFETTEYDFETVARRLQEMAFLNKGLTINLTDQRVTQDEVVDEVVSDVAEAPKSASEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + ++ T Y GG+ FV +++R K + S + G +++AM+WN G Sbjct: 237 AAESAAPHKVKKRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGPGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G RSALT + Y + K+ ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKEKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK +V K + ++ Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI +LRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIARLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG HI TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675 >gi|288556234|ref|YP_003428169.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4] gi|288547394|gb|ADC51277.1| DNA topoisomerase IV subunit B [Bacillus pseudofirmus OF4] Length = 656 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 265/669 (39%), Positives = 389/669 (58%), Gaps = 22/669 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAKK-QHLDYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V+D GRG+P +H + G E+I+T LHAGGKF Q Y SGGL Sbjct: 59 GSYIKVTIHRDNSISVTDEGRGMPVGMH-KLGKPTPEIILTVLHAGGKFGQGGYATSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G +Y+ F N G L G +GT + F P Sbjct: 118 HGVGASVVNALSEWLVVEIKRDGTVYKQRFENGGKAVTTLEKQG-TTRKSGTTIHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +N++TL RLRE +FL ++I L D RS + Y GIEAFV YL+ Sbjct: 177 SIFSVTTYNFETLSERLREAAFLLKGLKIELCDMRS-DQENEIFHYDNGIEAFVEYLNED 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + G I ++LA ++NDGY E+VL F NN+ KDGGTH G ++A+TR Sbjct: 236 KETLHP-VVSFSGEHQEIEVELAFQFNDGYTESVLSFVNNVRTKDGGTHELGAKAAMTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + Y K K+ ++++ G D REGFT+++S+++P+ +F QTK KL + E RS V+ Sbjct: 295 VNEYARKVKLLKEKEKNLDGSDIREGFTAIVSVRVPEAKLQFEGQTKSKLGTPEARSAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 V++ LS + EE+P + +++KK + A+ R+AAR+AR+ +K L GKL Sbjct: 355 GLVSEKLSYFFEENPDISTMLIKKAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++PK++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++ ++EI Sbjct: 415 PAQSKNPKRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIR 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D FD+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M L+ G +Y Sbjct: 475 TIIHTIGAGVGAD-FDLEDVNYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVY 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y DE L+ + + G ++ L Sbjct: 534 IALPPLYKVSRGTGKKEVIEYAWDERELDTAIKKVGRGY-MLQRYKGLGEMNATQLWET- 591 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 +D + + + + + +A L E Sbjct: 592 ----TMDPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIETHVAFGLEEETNILEN 647 Query: 652 SWHGSINNS 660 + Sbjct: 648 ENLAVVEEE 656 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + + +S +++ L SKN RN + Sbjct: 378 KAVKAAQAREAARKAREDARNGKKSKRKDVLLSGKLTPAQSKNPKRNELYLVEGDSAGGS 437 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + ++ ++ ++ I + N D Sbjct: 438 AKQGRDRKFQAVLPLRGKVINTEKAKLEDIMKNEEIRTIIHTIGAGVGADFDLEDVNYDK 497 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718 +V + F + + + ++ + + K ++ Sbjct: 498 IVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVYIALPPLYKVSRGTGKKEVIEYAWD 557 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L I +GR G +QRYKGLGEMNA+QLWETT++P+TR+L+RVKI DA++A+ + Sbjct: 558 ERELDTAIKKVGR-GYMLQRYKGLGEMNATQLWETTMDPETRTLIRVKIDDAARAERRVT 616 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I+ + Sbjct: 617 TLMGDKVEPRRKWIETH 633 >gi|215432910|ref|ZP_03430829.1| DNA gyrase subunit B [Mycobacterium tuberculosis EAS054] gi|260198989|ref|ZP_05766480.1| DNA gyrase subunit B [Mycobacterium tuberculosis T46] gi|289441372|ref|ZP_06431116.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46] gi|289748467|ref|ZP_06507845.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92] gi|289756064|ref|ZP_06515442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289414291|gb|EFD11531.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46] gi|289689054|gb|EFD56483.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92] gi|289696651|gb|EFD64080.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 714 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 268/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 44 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++A++WN GY E+ Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIQWNAGYSES 339 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714 >gi|284010225|dbj|BAI66712.1| DNA gyrase B [Borrelia turcica] Length = 625 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 271/554 (48%), Positives = 397/554 (71%), Gaps = 3/554 (0%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 +LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I + +N D S TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEIVINSDNSITV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+ Sbjct: 60 SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + ++R+G ++ +F GI + + V G + GT+VTFL +IF +++++TL RL Sbjct: 120 VFVRRDGKVFRQTFSRGIPTSEVEVVGES-CSRGTKVTFLADYEIFETLNYSFETLSKRL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 +EL+FLN ++IS+ D+R E + +++GGI+AFV YL + + + P I+GS D Sbjct: 179 KELAFLNDKIRISIEDRRLGEEKFKEFYFEGGIKAFVDYLTNNSRNIQSEPYFIEGSFDE 238 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 + +D+ ++W +GY EN+L F NNI ++GGTH++G RS L + + + + SKKD Sbjct: 239 VIVDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKMTKISKKDVPI 298 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 + DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + + ++PLE + Sbjct: 299 LTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETVVHDGLLSIINDNPLEIE 358 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 +I K + A+ R+AAR+AR+ R+K + +LPGKLADCS ++P + E+++VEGDSAG Sbjct: 359 VIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREIYIVEGDSAG 418 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ F I +LR Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556 YHK+IIM DADVDG+HIRTLLLTFFFR M +L+ N +YI PPLY I + Y D+ Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKIKSENRVHYFYDD 537 Query: 557 ESLEDYLINQSLSE 570 E +L + + Sbjct: 538 LEKESFLGSIESDK 551 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT------IFSIGRKGI 734 + +F +Y R + + L+ I S R I Sbjct: 497 LLLTFFFRYMRTLVENKHVYIAMPPLYKIKSENR-VHYFYDDLEKESFLGSIESDKRDKI 555 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMN +QLWETT+NP TR + + I DA QAD +F LMGD+VEPRREFI++ Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAMQADRIFVTLMGDDVEPRREFIEQ 615 Query: 795 NSLP-SALDI 803 N+L LD+ Sbjct: 616 NALDVVNLDV 625 >gi|215425191|ref|ZP_03423110.1| DNA gyrase subunit B [Mycobacterium tuberculosis T92] Length = 675 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 269/654 (41%), Positives = 380/654 (58%), Gaps = 39/654 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SG Sbjct: 60 GYATTVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F Sbjct: 119 GLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +F +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 PAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASER 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + T Y GG+ FV +++R K + S + G +++A++WN G Sbjct: 237 AAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G RSALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ Sbjct: 357 VISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DG HI TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 536 DGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGL 595 Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 596 KAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 647 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 649 SILMGEDVDARRSFITRNAKDVRFLDV 675 >gi|38232647|ref|NP_938414.1| DNA gyrase subunit B [Corynebacterium diphtheriae NCTC 13129] gi|38198905|emb|CAE48516.1| DNA gyrase subunit B [Corynebacterium diphtheriae] Length = 685 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 280/682 (41%), Positives = 393/682 (57%), Gaps = 46/682 (6%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA + Sbjct: 7 TAEHEYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYATHV 65 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DG V DNGRGIP ++H G +V+MT+LHAGGKF+ SY VSGGLHGVG Sbjct: 66 DVTLLADGGVEVVDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 124 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS+ ++ IKR+G + +F I D PL V G TGT + F P ++IF Sbjct: 125 ISVVNALSTRVEADIKRDGKHWLQNFSMAIPD-PL-VEGGNARGTGTTIRFWPDAEIFET 182 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE------------------------ 220 F ++T+ RL+E++FLN + I+L+DKR + Sbjct: 183 TTFKFETISRRLQEMAFLNKGLTITLVDKRVTDEELELEAIAEEGDTAENVSLDQIDVDA 242 Query: 221 ----------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 FY G++ +V++L++ K+ + + I ++ +++AM+ Sbjct: 243 DGNIDAPAAPKKREKKKVFFYPDGLKDYVAHLNKSKQVIHPTIISFDAKGNDHEVEVAMQ 302 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 WN+ Y ++V F N I +GGTH G R+ALT + Y + K+ + ++ GDDCRE Sbjct: 303 WNNSYSQSVHTFANTINTFEGGTHEEGFRAALTSLMNRYAREHKLLKEKEANLTGDDCRE 362 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G ++V+S+++ DP+F QTK KL ++EV+ V+ VN+ ++ WL+ +P EAK I+ K + Sbjct: 363 GLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHIADWLDANPAEAKTIINKAVS 422 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 ++ R AAR+ARDL RRK D+ LPGKLADC +DP+KSEL++VEGDSAGGSAK GR Sbjct: 423 SAHARVAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKAGRD 482 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDI KLRYHKI++M Sbjct: 483 SLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDIKKLRYHKIVLMA 541 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYL 563 DADVDG+HI TLLLT FR MP LI G +Y+ +PPLY + GK + + + L Sbjct: 542 DADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGEPGFAYSDAERDTLL 601 Query: 564 INQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFN 623 D N + D T ++A Sbjct: 602 AEGLAQNRKINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITDAQRADEIFSIL 661 Query: 624 CESDQEINVSLASKLANRLNFI 645 D S ++ A + F+ Sbjct: 662 MGDDVSARRSFITRRAKDVRFL 683 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 8/88 (9%) Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 DT+ + G + I+ +QRYKGLGEMNAS+LWETTL+P R L RV ITDA +AD++ Sbjct: 598 DTLLAEGLAQNRKINKDDGIQRYKGLGEMNASELWETTLDPKYRVLRRVDITDAQRADEI 657 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LDI Sbjct: 658 FSILMGDDVSARRSFITRRAKDVRFLDI 685 >gi|227487658|ref|ZP_03917974.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867] gi|227092352|gb|EEI27664.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867] Length = 691 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 290/665 (43%), Positives = 390/665 (58%), Gaps = 54/665 (8%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+++ QN YDA SI +L+GL+AV+KRP MYIG T G GLHH+++EV+DN+IDE Sbjct: 1 MAESQQNLSPEHHDYDATSITVLEGLEAVRKRPGMYIGST-GRRGLHHLVWEVVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD + V L+ DGS V+DNGRGIP ++H + G EV+MT+LHAGGKFN SYK Sbjct: 60 ALAGFADKVDVVLHEDGSVEVTDNGRGIPVEMH-QTGRPTVEVVMTQLHAGGKFNNDSYK 118 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG+SVVNALS+ ++ IKR+G + F N + D L G A TGT + F Sbjct: 119 VSGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPD-DLEKGGKA-RGTGTRIRF 176 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------- 214 P ++IF +FNY T+ RL++++FLN V I L DKR Sbjct: 177 WPDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEA 236 Query: 215 ----------------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252 +P R + Y G+ +V +L++ K L + + Q Sbjct: 237 DSLSLDEVDEKLAEKPQAEEPETPSERSVVFHYPDGLIDYVKFLNKKKTALHPTIVGFQD 296 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312 S D++++++A++WN Y ENV F N I +GGTH G R+ALT + Y K Sbjct: 297 SEDDLALEVALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLLKD 356 Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372 + GDDCREG ++V+S+K+ DP+F QTK KL ++ V+S V+ VN L+ W E +P Sbjct: 357 KDPKLTGDDCREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANP 416 Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432 EAKIIV+K ++ R AAR+AR+L RRK D+ LPGKLADC +DP+KSEL++VEG Sbjct: 417 AEAKIIVQKASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEG 476 Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 DSAGGSAK GR QAILPLRGKILNVE+AR D+ + EI +ITALGTG+ D FDI Sbjct: 477 DSAGGSAKAGRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGV-HDEFDI 535 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQ 551 +KLRYHKI++M DADVDG HI TLLLT FR MP+LI G +Y+ PPLY + K Sbjct: 536 SKLRYHKIVLMADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPG 595 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 + ++ +D L + D N + D Sbjct: 596 FAYSDQERDDLLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLE 655 Query: 612 FIEQA 616 E+A Sbjct: 656 DAERA 660 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL GRK I+ +QRYKGLGEMNAS+LWETTL+PD R+L RV + DA +AD+L Sbjct: 605 DLLAEGLEAGRK-INTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLEDAERADEL 663 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI N+ LD+ Sbjct: 664 FSILMGDDVVARRTFITRNAKDVRFLDV 691 >gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119] gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119] Length = 640 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 293/592 (49%), Positives = 404/592 (68%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ANQIEVVIENDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ G+ L GS + TGT + F S+ Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IFS +NY+TLQ R+REL+FLN + I+L D+R + + Y+GGI+++V L+ Sbjct: 179 IFSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQREDTYHYEGGIKSYVELLNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY +S K DK + G+D REG T+V+S+K +P+F QTK KL +SEVR +V+ Sbjct: 299 VLNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDR 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 359 LFSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++P +SE+FLVEGDSAGGS K+GR + QAILPLRGKILNVE+AR D++L++ EI +I Sbjct: 419 SKNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PPLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 538 PPLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWQISRYKGLGEMNADQLWE 589 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 24/183 (13%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 462 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 521 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRY 739 R IE Y+ I L K + LD + + ++ + RY Sbjct: 522 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWQISRY 576 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETT+NP+ R +L+VK+ DA +AD F LMGD VE RR+FI++N++ + Sbjct: 577 KGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEMLMGDVVENRRQFIEDNAVYA 636 Query: 800 ALD 802 LD Sbjct: 637 NLD 639 >gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus] Length = 688 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 272/595 (45%), Positives = 368/595 (61%), Gaps = 15/595 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y AD I +L+GL+ V+KRP MYIG T G GLHH+++EV+DNAIDE+L GY D + VTL Sbjct: 41 DYGADQITVLEGLEPVRKRPGMYIGST-GPKGLHHLVFEVVDNAIDEALAGYCDTVYVTL 99 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVS 126 DGSCTV DNGRGIP D+H SA E ++T LHAGGKF YKVSGGLHGVGVS Sbjct: 100 EEDGSCTVRDNGRGIPCDIHPRTKKSALETVLTVLHAGGKFGGDESGYKVSGGLHGVGVS 159 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQ 185 VVNALS W ++ + R G + +SF G L + A GT V FLP +IF Sbjct: 160 VVNALSQWAEVEVVRGGKRHSLSFERGKTQGDLFTADAGAEEAGGTAVRFLPDPEIFKTT 219 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISL------IDKRSPEPREITMFYKGGIEAFVSYLDR 238 F ++ L R+ EL++LN+ V I + +D+ + T +KGG++ FV + + Sbjct: 220 TEFEFERLSGRMDELAYLNAGVSIVMADARSGVDEDGNFKKTETYLHKGGVQEFVELMCK 279 Query: 239 HKKPLMQSPIRIQ--GSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 K+ L I+ G RD + ++ + W+ D Y ++++ F N I DGGTHL GL+S Sbjct: 280 EKQHLHPDMKVIRALGERDGVQVEACLSWSSDMYTDSLVSFANGIRTGDGGTHLEGLKSI 339 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR + S KS K + ++ GD REG T+V+S+K+P+P F QTK +L + EVR + Sbjct: 340 VTRTVNSMGRKSGKLKDSQSNLGGDFVREGLTAVVSVKVPEPEFEGQTKNRLGNPEVRGI 399 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+S V + L E HP I+ K A AA+ ARD+ RRK +L LPGKLA Sbjct: 400 VDSIVGEELVKLFEWHPKILGAILDKASSAQAAAAAAKAARDMVRRKSLLTSTVLPGKLA 459 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC+ RDP +SE+++VEGDSA GSAKQGR R QAILPLRGKILN+E+ +++ + E+ Sbjct: 460 DCASRDPVESEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKCASERIYQNNELQ 519 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LI+ALG GI + FD + LRYH+I++MTDADVDG+HIR LLLTFFFR SLI NGF++ Sbjct: 520 ALISALGLGIKGNEFDASSLRYHRIVVMTDADVDGSHIRILLLTFFFRYQRSLIENGFVF 579 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 I PPLY I +GK+ +YV +E + + S + G + L + Sbjct: 580 IACPPLYKIKQGKTEKYVYTQEECDSAVSELPASPAVQLQRFKGLGEMMPQQLWD 634 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 77/157 (49%), Gaps = 15/157 (9%) Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIF----SFGSKYKRIFSNRIEENYL----TILSL 707 + S + RI V ++GS I +F +Y+R IE ++ L Sbjct: 533 EFDASSLRYHRIV--VMTDADVDGSHIRILLLTFFFRYQRSL---IENGFVFIACPPLYK 587 Query: 708 ICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 I G K D+ S + +QR+KGLGEM QLW+TT++P R+L V Sbjct: 588 IKQGKTEKYVYTQEECDSAVSELPASPAVQLQRFKGLGEMMPQQLWDTTMDPARRTLKLV 647 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 + DA+ AD +FS LMGD V PR+EFI E++ LD Sbjct: 648 TVEDAAAADRIFSVLMGDNVGPRKEFINEHANNLKLD 684 >gi|15839377|ref|NP_334414.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551] gi|308232616|ref|ZP_07416630.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001] gi|308369281|ref|ZP_07417160.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002] gi|308370291|ref|ZP_07420933.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003] gi|308371557|ref|ZP_07425301.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004] gi|308375038|ref|ZP_07442451.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007] gi|308379671|ref|ZP_07487073.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010] gi|308380869|ref|ZP_07491290.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011] gi|308406291|ref|ZP_07495844.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012] gi|13879046|gb|AAK44228.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551] gi|308213443|gb|EFO72842.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001] gi|308328160|gb|EFP17011.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002] gi|308332534|gb|EFP21385.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003] gi|308336277|gb|EFP25128.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004] gi|308347679|gb|EFP36530.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007] gi|308356307|gb|EFP45158.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010] gi|308360194|gb|EFP49045.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011] gi|308363881|gb|EFP52732.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012] Length = 686 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 16 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 75 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 311 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLDV 686 >gi|284010229|dbj|BAI66714.1| DNA gyrase B [Borrelia sp. Tortoise14H1] Length = 625 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 269/576 (46%), Positives = 400/576 (69%), Gaps = 6/576 (1%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 +LKGL+AV+KRP MYIG +GLHH++YEV+DN+IDE+L G+ D I V +N D S TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVS-INGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSITV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+ Sbjct: 60 SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + ++R+G ++ +F G+ + + V G + GT+VTFL ++F +++++ L RL Sbjct: 120 VFVRRDGKVFRQTFSRGVPTSEVEVVGES-FSRGTKVTFLADYEVFETLNYSFEILSKRL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 +EL+FLN ++IS+ D+R E + +++GGI+AFV YL + + + P I+GS D Sbjct: 179 KELAFLNDKIRISIEDRRIGEEKFKEFYFEGGIKAFVDYLTNNSRNIQSEPYFIEGSFDE 238 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 + +D+ ++W +GY EN+L F NNI ++GGTH++G RS L + + + + SKKD + Sbjct: 239 VIVDVGLKWTEGYSENILSFVNNINTREGGTHVAGFRSGLFKAMNEAFKGTKISKKDVPT 298 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 + DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ V+DGL + ++ LE + Sbjct: 299 LTLDDFKEGLTAVISIKVPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLRIINDNSLEIE 358 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 II K + A+ R+AAR+AR+ R+K + +LPGKLADCS ++P + E+++VEGDSAG Sbjct: 359 IIFDKAIRAARAREAARKARESERKKSTFESLALPGKLADCSSKNPVEREIYIVEGDSAG 418 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAK GR R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ F I +LR Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556 YHK+IIM DADVDG+HIRTLLLTFFFR M +L+ N +YI PPLY + + Y D+ Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRTLVENKHVYIAMPPLYKVKSENRVHYFYDD 537 Query: 557 ESLEDY---LINQSLSEEIELFCDSKGVISKNDLRN 589 E + + ++ + G ++ L Sbjct: 538 LEKESFLGSIESEKRDKINLQRYKGLGEMNPTQLWE 573 Score = 164 bits (414), Expect = 8e-38, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT------IFSIGRKGI 734 + +F +Y R + + L+ I S R I Sbjct: 497 LLLTFFFRYMRTLVENKHVYIAMPPLYKVKSENR-VHYFYDDLEKESFLGSIESEKRDKI 555 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMN +QLWETT+NP TR + + I DA QA+ +F LMGD+VEPRREFI++ Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPATRKMKLIGIDDAMQAERIFVTLMGDDVEPRREFIEQ 615 Query: 795 NSLP-SALDI 803 N+L LD+ Sbjct: 616 NALDVVNLDV 625 >gi|257437729|ref|ZP_05613484.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165] gi|257200036|gb|EEU98320.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165] Length = 664 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 266/606 (43%), Positives = 383/606 (63%), Gaps = 23/606 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y+A IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY + Sbjct: 12 ETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYCN 70 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 I V + + V+DNGRGIP D+ + G+ A V+ T LHAGGKF YKV+GGL Sbjct: 71 HIEVKILKNNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGGL 130 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSS 179 HGVG SVVNA S WL + ++R+G+ YE +F G D PL G+ A TGT VTF P Sbjct: 131 HGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCLGTVAEGVTGTRVTFKPDP 190 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------PEPREITMFY 225 ++F +N++TL+ RLRE SFLN+ V+I+L D+R P R M Y Sbjct: 191 EMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGQEGDPCYRTEVMCY 250 Query: 226 KGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 +GGI++FV+Y R+ + L + I ++G + ++A+++N Y+E +L F NN+ Sbjct: 251 EGGIKSFVTYLGEKRNLEVLHPNVIYLKGQTERGMAEIALQYNSSYNELLLSFANNVNTP 310 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 DGGTH G R++LTR Y K ++ G D REG V+S+K+ + F QT Sbjct: 311 DGGTHEEGFRTSLTRVFNDYGRSHGLLKDKDENLSGSDVREGLICVISVKLQEAEFEGQT 370 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K KL ++E+R++V + V L + EE+P AK I +K A+ R AA++AR+L RRK Sbjct: 371 KAKLGNTEIRTLVSNMVYTKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRKS 430 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR QAILPL GK+LNVE+A Sbjct: 431 ALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEKA 490 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R D++ + ++ ++ ALG GIG++ FDI+KLRY K+ IM DADVDG+HI TL+LTFFFR Sbjct: 491 RADRIYGNDKLMPVVLALGCGIGEE-FDISKLRYDKVFIMADADVDGSHICTLMLTFFFR 549 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 M LI G +Y+ +PPL+ + +G +++Y ++ + +++Q + G ++ Sbjct: 550 YMRPLIEQGHVYVAQPPLFKVQKGNTIKYAYNDAEMA--ILSQEMPGAKVNRYKGLGEMN 607 Query: 584 KNDLRN 589 L Sbjct: 608 PEQLWE 613 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 L + G+ IK + + + G + RYKGLGEMN QLWETT+NPD R + Sbjct: 565 PPLFKVQKGNTIKYAYNDAEMAILSQE-MPGAKVNRYKGLGEMNPEQLWETTMNPDNRVI 623 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +++ I DA +AD+ F+ LMGD+VEPRR FI+ N+ + LD+ Sbjct: 624 VQITIEDAEKADEAFTILMGDQVEPRRRFIETNAQYAKLDV 664 >gi|228998349|ref|ZP_04157941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17] gi|229005832|ref|ZP_04163527.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4] gi|228755412|gb|EEM04762.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock1-4] gi|228761394|gb|EEM10348.1| DNA topoisomerase 4 subunit B [Bacillus mycoides Rock3-17] Length = 654 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 265/663 (39%), Positives = 397/663 (59%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G IYE F N G+ L G +GT + F P Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++I++ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIRDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSVD 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121] Length = 644 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 406/591 (68%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 DEINVTIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L GS + TGT + F S I Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEIGST-DKTGTAIRFKADSSI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R + R+ + +Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLTDERDEDDIRQDSYYYEGGIKSYVEMLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHGEPIYIHQSKDDIEVEIAIQYNKGYSTNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGMNSKIIKEDKDRLSGEDTREGLTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P +IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 364 FSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P++SE+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI ++IT Sbjct: 424 KNPEESEIFLVEGDSAGGSTKSGRDSSTQAILPLRGKILNVEKARLDRILNNNEIRSMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + + Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ RS+L+V + DA AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVTLEDAIDADQTFEMLMGDI 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|330898604|gb|EGH30023.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 628 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 297/629 (47%), Positives = 400/629 (63%), Gaps = 10/629 (1%) Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F++D L R+RELSFLNS V I L D+RS + Y+GG+ AFV YL+ +K Sbjct: 1 FKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE--ELFKYEGGLRAFVEYLNTNKT 58 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + D I +++A++WND ++EN+LCFTNNIPQ+DGGTHL G RSALTR + Sbjct: 59 PVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLN 118 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +Y+E+ +KK K + GDD REG T+++S+K+PDP+FSSQTK+KLVSSEV++ VE + Sbjct: 119 NYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 178 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 S +L E+P EAK +V K++DA+ R+AAR+AR++TRRKG LDIA LPGKLADC E+D Sbjct: 179 KYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKD 238 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SEL+LVEGDSAGGSAKQGR+R QAILPL+GKILNVE+ARFDKM+SSQE+GTLITAL Sbjct: 239 PALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITAL 298 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G GIG++ ++I+KLRYH IIIMTDADVDG+HIRTLLLTFFFRQ+P LI G++YI +PPL Sbjct: 299 GCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPL 358 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y + +GK QY+KD+E++E+Y+ +L + +S IS L ++D + K + Sbjct: 359 YKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVNDFRMVMKTL 418 Query: 602 KDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE-----KSEKSWH 654 K + + E V E D E + + RL + K+ Sbjct: 419 KRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDARLRTGEKSGLVYKASLRED 478 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N V+ I+ G+ S K +I + K Sbjct: 479 RERNVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERKK 538 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + L + + K ++QRYKGLGEMN QLWETT++P R +L+V I DA AD Sbjct: 539 PVNEFKEALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGAD 598 Query: 775 DLFSRLMGDEVEPRREFIQENSLPS-ALD 802 +F+ LMGD VEPRR+FI+ N+L LD Sbjct: 599 QIFNTLMGDAVEPRRDFIESNALAVSNLD 627 >gi|254233410|ref|ZP_04926736.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C] gi|124603203|gb|EAY61478.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C] Length = 686 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 16 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 75 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 311 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 660 SILMGEDVDARRTFITRNAKDVRFLDV 686 >gi|197302273|ref|ZP_03167332.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC 29176] gi|197298704|gb|EDY33245.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC 29176] Length = 644 Score = 568 bits (1465), Expect = e-159, Method: Composition-based stats. Identities = 297/585 (50%), Positives = 393/585 (67%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 9 DAEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDKIVV 67 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV+DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 68 DINKDNSITVTDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G + L + G TGT+VTFLP +IF Sbjct: 128 VVNALSEWLEVEICHEGKIYKQRYERGKVCYKLRIEGDCDPELTGTKVTFLPDKEIFEET 187 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+Y+TL+ R RE++FL ++I L D R E E T Y+GGI+ FV+YL++ K PL Sbjct: 188 VFDYNTLKQRFREMAFLTKGLKIQLRDLREEEVHEHTFHYEGGIKEFVTYLNKSKTPLYD 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +DN+ +++AM+ ND Y+E F NNI +GGTH++G RSALT+ Y + Sbjct: 248 QIIYCEGMKDNVYVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTKTFNDYAK 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K+ ++ + GDD REG T+++S+K+ DP+F QTK+KL +SE R V++ V L Sbjct: 308 KNKLLKESEQ-LSGDDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGAVDNIVRTQLE 366 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+ + K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DP K Sbjct: 367 IFLEQNPSVAKLTIDKSMMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPSKC 426 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ + EI +ITA GTGI Sbjct: 427 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 486 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 487 -HDDFDISKLRYHKIIIMTDADVDGAHISTLLLTFMYRFMPDLIKEGYVYLAQPPLYKLE 545 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + K + Y +E L L G + L + Sbjct: 546 KNKKVWYAYSDEELNQILTEVGRDNNNKIQRYKGLGEMDAEQLWD 590 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 70/122 (57%), Gaps = 9/122 (7%) Query: 691 RIFSNRIEENYL-----TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGE 744 R + I+E Y+ + L N L + +GR + +QRYKGLGE Sbjct: 523 RFMPDLIKEGYVYLAQPPLYKLEKNKKVWYAYSDEELNQILTEVGRDNNNKIQRYKGLGE 582 Query: 745 MNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-AL 801 M+A QLW+TT++P+ R LLRV + D + + D F+ LMGD+VEPRREFI+EN+ L Sbjct: 583 MDAEQLWDTTMDPEHRILLRVTMDDETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNL 642 Query: 802 DI 803 DI Sbjct: 643 DI 644 >gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1] gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1] Length = 635 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 268/645 (41%), Positives = 389/645 (60%), Gaps = 15/645 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A+SI++LKGL+AV+KRP MYIG T GLHH+++E++DN++DE++ G+A+ I Sbjct: 1 MAEQNYGAESIKVLKGLEAVRKRPGMYIGSTSKA-GLHHLVWEIMDNSVDEAMAGFANKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +T+ +G V DNGRGIP + + G SA E++ T+LHAGGKF+ SYK+SGGLHGVG Sbjct: 60 ILTITKEGEIIVQDNGRGIPVGIQADSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 SVVNALS ++ +++KREG I+ F G + + G N+TGT V F P +IF Sbjct: 120 ASVVNALSLYVDVQVKREGKIHHQVFSGGGTQQTEIEIIGET-NETGTIVRFKPDPEIFL 178 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F+Y+T+++++++LS+LN + I L D R + E GI +V + K Sbjct: 179 EGTEFDYETIRNKVKQLSYLNKGLVIELNDLRIDKHVEYHF--PNGILDYVKEKNETKVK 236 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + S + D+I +++A+++N Y EN++ F NNI +GGTH GLR +L R I Sbjct: 237 INPSIFYVDDKHDDIEVEVALQYNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINR 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y EK K DD +EG ++SI+ DP++ QTK KL + + + V++ V D Sbjct: 297 YAEKVATGNKPAAKYSWDDIKEGMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGD 356 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L + P +AK I+ K +A R AA+RAR+ TRRK LD SLPGKLADC +DP Sbjct: 357 AFEEFLLKSPEDAKAIIDKNANAQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDP 416 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + +EL+LVEGDSAGGSAK GR+R QAILPLRGK+LNVER + ++ EI +++TA+G Sbjct: 417 EIAELYLVEGDSAGGSAKTGRNRRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIG 476 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TGI +D D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ +G +YI +PPLY Sbjct: 477 TGIKEDI-DLSKLRYGKIVIMTDADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLY 535 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 I GK + Y + LE+ F DS+ I + +D + + Sbjct: 536 KIEAGKKVAYAYSDVELEELK--------AGDFKDSRFTIQRYKGLGEMDPIQLWETTMD 587 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + +E A I+ + E + + F+ Sbjct: 588 PEKRTMLQIKLEDAAIANEVFSDLMGEDPELRRNYIQENAEFVEN 632 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E+ +++ + + I ++ S +V V + Sbjct: 451 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736 F + + + + L I G K+ L+ + F R ++ Sbjct: 511 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDVELEELKAGDFKDSR--FTI 567 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEM+ QLWETT++P+ R++L++K+ DA+ A+++FS LMG++ E RR +IQEN+ Sbjct: 568 QRYKGLGEMDPIQLWETTMDPEKRTMLQIKLEDAAIANEVFSDLMGEDPELRRNYIQENA 627 Query: 797 LPS-ALD 802 +D Sbjct: 628 EFVENID 634 >gi|291297295|ref|YP_003508693.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279] gi|290472254|gb|ADD29673.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279] Length = 643 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 282/645 (43%), Positives = 392/645 (60%), Gaps = 16/645 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++ +SYDA +I++LKGL+ V+ RP+MYIG T G HH+ E+LDNA+DE+L G+ Sbjct: 1 MSTDL-TTSYDASAIKVLKGLEGVRHRPAMYIGGTQA-DGYHHLFKEILDNAVDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I TL+ DGS TV DNGRGIP D+ EE A EVI T LHAGGKF + +YKVSGGL Sbjct: 59 ATEIVTTLHPDGSITVEDNGRGIPVDIMPEEQKPAVEVIYTVLHAGGKFEEGAYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSS 179 HGVG SVVNALS + ++ + R+G + + F G + PL V G A GT VTFLP Sbjct: 119 HGVGASVVNALSEFTRVEVFRDGKHHLIEFSRGEVTRPLQVVGEAPKGKRGTRVTFLPDP 178 Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF S Q F L+ RLRE+SFL + +++ D+ + F KGG+ +F + Sbjct: 179 QIFGSEQKFEASRLRVRLREVSFLVAGLKLVFKDEIHQKE--EVFFDKGGVASFAKFRAD 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ L P+ +QG + + +++ + GY +++ F N IP DGGTH+SG ++A TR Sbjct: 237 GEELLYDKPVLLQGQVEAVGVEVGLVHTKGYSADLVSFANMIPTVDGGTHVSGFKTAYTR 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y +K+ GDD EG + V+S+K+P P+F QTK KL++ E + V Sbjct: 297 AINTYAKKAG--LVKDLEPTGDDLLEGLSCVISVKIPQPQFEGQTKGKLLNPEAGTAVSR 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + S +LEE+P AK+I +K A+ R+AAR+AR+L RR L+ LPGKLADC Sbjct: 355 VVYEKFSEYLEENPRIAKMIYEKAQRAAQAREAARKARELVRRANPLESDDLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 DP ++ELF+VEGDSAGGSAK GR R QAILPLRGKILNVE+A +K L + E+ ++ Sbjct: 415 SEDPAEAELFIVEGDSAGGSAKSGRDRRFQAILPLRGKILNVEKAGLNKALKNAEVRAMV 474 Query: 479 TALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 A+G GIG + F+I LRYHKIIIMTDADVDG+HIRTLLLTFF+R M +I G+ Sbjct: 475 AAIGAGIGGKDNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPIIERGY 534 Query: 534 LYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-F 590 LY+ +PPLY + + K ++Y+ D+E+L+ L N G ++ L Sbjct: 535 LYVAQPPLYGLRVGKSKQMEYIFDDEALKKALANIGDKPYEIQRFKGLGEMNAEQLWETT 594 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 +D A ++ K + ++ + + S V E N A Sbjct: 595 MDPARRVLKKVDMKDASYAAQIFDDLMGSDVQPRREFIEENARFA 639 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILS 706 + E ++ ++ V + F + I + + Sbjct: 485 DNEEAHFNIEDLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPIIERGYLYVAQPPLYG 544 Query: 707 LICNGDKI--KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 L K I +L + +IG K +QR+KGLGEMNA QLWETT++P R L + Sbjct: 545 LRVGKSKQMEYIFDDEALKKALANIGDKPYEIQRFKGLGEMNAEQLWETTMDPARRVLKK 604 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 V + DAS A +F LMG +V+PRREFI+EN+ + +++ Sbjct: 605 VDMKDASYAAQIFDDLMGSDVQPRREFIEENARFARIEV 643 >gi|315222934|ref|ZP_07864813.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211] gi|315187884|gb|EFU21620.1| DNA topoisomerase IV, B subunit [Streptococcus anginosus F0211] Length = 649 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 274/649 (42%), Positives = 397/649 (61%), Gaps = 19/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT++ DGS TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDKIDVTIHKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+ A + +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTIYKQRFENGGKPATTLKKIGTAAKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL E +FL +V +SL D+R+ E + Y+ G++ FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTISERLNESAFLLKNVHLSLTDERTGES--VDFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G +++A+++NDGY +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEEGGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRSGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LED ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + ++ I I D + + + + +L Sbjct: 595 TMNPENRTLIRVTIDDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 643 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 55/73 (75%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+ + LMG Sbjct: 564 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIDDLARAERRVNVLMG 623 Query: 783 DEVEPRREFIQEN 795 D+V PRR++I++N Sbjct: 624 DKVPPRRKWIEDN 636 >gi|42782667|ref|NP_979914.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 10987] gi|217960999|ref|YP_002339567.1| DNA topoisomerase IV subunit B [Bacillus cereus AH187] gi|229140210|ref|ZP_04268768.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26] gi|42738593|gb|AAS42522.1| DNA topoisomerase IV, B subunit [Bacillus cereus ATCC 10987] gi|217067922|gb|ACJ82172.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH187] gi|228643296|gb|EEK99569.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST26] Length = 654 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y ++ L++ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106] gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106] Length = 645 Score = 568 bits (1464), Expect = e-159, Method: Composition-based stats. Identities = 295/591 (49%), Positives = 403/591 (68%), Gaps = 9/591 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G+ I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 N DGS TV+D+GRGIP D+H + G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 DFNADGSVTVTDDGRGIPVDVHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+++++ R+ Y + G+ + L S G TGT V FLP + IF+ Sbjct: 121 VVNALSEWVEVQVLRDETQYTQRYQRGVPVDELQSKPSQGKQTGTSVQFLPDTTIFTTGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-----RSPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y T+ +RLREL++LN+ V+I+L D + E + + Y+GGI +++Y++R K Sbjct: 181 EFDYATIANRLRELAYLNAGVRITLTDNRLDLIQLEEAKTESFCYEGGIREYIAYMNREK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I + G R+N+ I++A++W D Y +N+L F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEDVIYVSGERNNVQIEVALQWCVDAYSDNILGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + ++ K K+++ ++ G++ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 MNNFARKRNKLKENESNLGGENVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +L+ HP A +++K + A +AARRARDL RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLDFHPHIADAVLEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R P +SE+FLVEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI +LIT Sbjct: 421 RIPAESEIFLVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI + FD ++LRYHKIIIMTDADVDGAHIRTLLLTFF+R L+ GF+YI P Sbjct: 481 ALGLGIRGEDFDSSQLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQRELVEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLY + RG++ Y ++ L++ L + G + L N Sbjct: 541 PLYKVERGRNHYYCYNDRELQERLAEFPSNANYNIQRFKGLGEMMPEQLWN 591 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 6/129 (4%) Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737 + +F +Y+R + I + + + L + + ++Q Sbjct: 517 LLLTFFYRYQRELVEQGFIYIACPPLYKVERGRNHYYCYNDRELQERLAEFPSNANYNIQ 576 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796 R+KGLGEM QLW TT+NP+TR + +V++ DA+QAD++F+ LMGD V PRREFI+ N+ Sbjct: 577 RFKGLGEMMPEQLWNTTMNPETRMIKQVEVEDAAQADNVFTVLMGDRVAPRREFIETNAP 636 Query: 797 -LP-SALDI 803 L LDI Sbjct: 637 RLNLVDLDI 645 >gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus lugdunensis M23590] gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus lugdunensis M23590] Length = 644 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 296/640 (46%), Positives = 415/640 (64%), Gaps = 6/640 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 DQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F S+I Sbjct: 125 GVGSSVVNALSEDLEVYVHRNETIYHQAYKKGVPQFDLKEVGET-DKTGTVIRFKADSEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ ++YDTLQ R+REL+FLN + I+L D+R E + Y+GGI+++V ++ + Sbjct: 184 FTETTVYDYDTLQKRIRELAFLNKGISITLKDERDDEEQREDTYHYEGGIKSYVELMNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ + PI I +D+I I++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHEEPIYIHQMKDDIEIEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY KS K+DK + G+D REG T+V+SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGTKSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 364 FSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P +SE+F+VEGDSAGGS K+GR QAILPLRGKILNVE++R D++L++ EI +IT Sbjct: 424 KNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598 PL+ +T+GK YV +++ L+ S + G ++ + L + Sbjct: 543 PLFKLTQGKQKYYVFNDKELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPDNRM 602 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L + + ++ V + ++ + L Sbjct: 603 MLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATL 642 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 32/287 (11%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 + +++ + ++ ++ + + + + +++ I Sbjct: 362 KLFSEYFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSHLEISSLPGKLADC 421 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI---- 657 P+ + FI + +G E ++ LN + ++ + + Sbjct: 422 SSKNPDESEIFIVEGDSAGGSTKEGRDSRTQAILPLRGKILNVEKSRLDRILNNNEIRQM 481 Query: 658 ---------NNSDILVKRIAR-------GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENY 701 DI R + V + F + I + + Sbjct: 482 ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541 Query: 702 LTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTL 755 + L K + LD + S +S + RYKGLGEMNA QLWETT+ Sbjct: 542 PPLFKLTQGKQKYYVFNDKE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTM 596 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 NPD R +L+V++ DA +AD F LMGD VE RR+FI++N++ + LD Sbjct: 597 NPDNRMMLQVRLDDAIEADKTFEMLMGDVVENRRQFIEDNAVYATLD 643 >gi|7387745|sp|Q9ZAQ6|GYRB_MYCAT RecName: Full=DNA gyrase subunit B gi|4099106|gb|AAD09234.1| gyrase B [Mycoplasma arthritidis] Length = 638 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 253/599 (42%), Positives = 365/599 (60%), Gaps = 14/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + S Y A +IQ L+GL+AV+KRP MYIG G GLHH+I+E++DN++DE++ G+ Sbjct: 1 MSKQEEISKYGAKNIQFLEGLEAVRKRPGMYIGSI-GFRGLHHLIWEIVDNSVDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ + V DNGRG+P D+H SA E I+T L+AGGKF+ +YKVSGGL Sbjct: 60 ATNIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLYAGGKFDSTNYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVGVSVVNALS ++ +KR G Y +IN G PL V G ++TGT + F P Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPLEVIGEVNKDETGTRIKFHPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I F++ T+ +++++LN + IS + + ++GGI +VS L+R Sbjct: 180 YQIMDKVAFDFGTIIDHAKQIAYLNKGLSISC--EDITKNTIRNFCFEGGIIDYVSELNR 237 Query: 239 HKKPLMQSPIRIQGSR-------DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 KK ++ I +G+ ++ +++A+++N+ Y N++ + NNI +GGTH G Sbjct: 238 GKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQYNETYTSNIVSYANNIQTGEGGTHEQG 297 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ALTR Y E + K + + +D ++G +++SIK DP F QTK KL + + Sbjct: 298 FYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKGKLENKD 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R +++ L ++ E+P AK I++K L R AA AR+ +R+K + +LP Sbjct: 358 ARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGSEFGNLP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADCS ++ + ELF+VEG+SAGGSAK GR R QAILPLRGKI+N E+ F ++S+ Sbjct: 418 GKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDFTSVMSN 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +E+ ++I ALGTGI D F+INKL+YHKI+IMTDADVDGAHI TLLLTFF+R M LI Sbjct: 478 KEVSSMIHALGTGI-TDEFNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYMRPLIEY 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 GF+YI +PPLY I+ K +Y ++ E+ L S+ I G + L Sbjct: 537 GFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKLEDSKNISIQRYKGLGEMDPEQLWE 595 Score = 85.4 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%) Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRS 761 +L + K IS+QRYKGLGEM+ QLWETT+NP TR Sbjct: 565 EEILSKLEDS--KNISIQRYKGLGEMDPEQLWETTMNPATRK 604 >gi|302669379|ref|YP_003829339.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316] gi|302393852|gb|ADL32757.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316] Length = 650 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 286/595 (48%), Positives = 395/595 (66%), Gaps = 10/595 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DN++DE+L G+ Sbjct: 5 MSEEAVK--YGADQIQILEGLEAVRKRPGMYIG-TTASRGLHHLVYEIVDNSVDEALAGF 61 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D + V DNGRGIP D++ + G++ EV+ T LHAGGKF YKVSGGL Sbjct: 62 CDHIEVTINEDNTIIVQDNGRGIPVDVNHKSGLTGVEVVFTILHAGGKFGGGGYKVSGGL 121 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSS 179 HGVG SVVNALS WL++++ R G +Y+ + G + PL G+A + TGT V F P + Sbjct: 122 HGVGASVVNALSEWLEVQVTRRGKVYQQRYERGKVCYPLKEVGTAPENVTGTRVYFKPDA 181 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLID---KRSPEPREITMFYKGGIEAFVSY 235 +IF F Y L+ RLRE++FL ++I+L D + +P + T Y+GGI+ FV Y Sbjct: 182 EIFRETTVFEYSVLKQRLREMAFLTKGLKITLTDKRVEEGEDPIQQTFHYEGGIKEFVQY 241 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+++K L + +G+R+N+ ++++ + ND Y+E++ F NNI +GGTHL G ++A Sbjct: 242 LNKNKTSLYGDIMYFEGNRNNVQVEVSFQHNDSYNESIYTFVNNINTPEGGTHLEGFKAA 301 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT+ Y + K + ++ G+D REG T+++S+K+ DP+F QTK+KL +SE R Sbjct: 302 LTKTFNDYARANKMLKDSEENLTGEDIREGLTAIISVKIEDPQFEGQTKQKLGNSEARGA 361 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V V++ L+ +LE++P AK I++K + A RDAAR+ARDLTRRK LD LPGKLA Sbjct: 362 VAGVVSEQLTYYLEQNPNVAKQILEKAILAQRARDAARKARDLTRRKSALDGMGLPGKLA 421 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS++DPK E+F+VEGDSAGGSAK RSR QAILPLRGKILNVE+AR D++ + EI Sbjct: 422 DCSDKDPKNCEIFIVEGDSAGGSAKTARSRATQAILPLRGKILNVEKARVDRIYGNAEIK 481 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +ITA GTGI D FDI+KLRY KIIIMTDADVDGAHI TL+LTF +R MP LI G +Y Sbjct: 482 AMITAFGTGI-HDDFDISKLRYDKIIIMTDADVDGAHISTLMLTFLYRFMPELIKQGHVY 540 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 + +PPLY + + K + Y +E L+ L + + G + L Sbjct: 541 LAQPPLYKLEKNKKVWYAYSDEELDKILTDVGRDQNNKIQRYKGLGEMDPEQLWE 595 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGIS--MQRYKGLGEMNASQLWETTLNPDTR 760 L + K+ LD I + + + +QRYKGLGEM+ QLWETT++P+ R Sbjct: 544 PPLYKLEKNKKVWYAYSDEELDKILTDVGRDQNNKIQRYKGLGEMDPEQLWETTMDPERR 603 Query: 761 SLLRVKITDASQA--DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV + + S + D F+ LMGD+VEPRREFI++N+ +DI Sbjct: 604 VLLRVNMDEESSSDIDVTFTTLMGDKVEPRREFIEKNAKFVKNIDI 649 >gi|118478841|ref|YP_895992.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al Hakam] gi|225865579|ref|YP_002750957.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102] gi|229185832|ref|ZP_04313005.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1] gi|118418066|gb|ABK86485.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis str. Al Hakam] gi|225790247|gb|ACO30464.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB102] gi|228597544|gb|EEK55191.1| DNA topoisomerase 4 subunit B [Bacillus cereus BGSC 6E1] Length = 654 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y ++ L++ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|311030250|ref|ZP_07708340.1| DNA topoisomerase IV subunit B [Bacillus sp. m3-13] Length = 655 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 271/659 (41%), Positives = 393/659 (59%), Gaps = 22/659 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE+LDN++DE+L GY Sbjct: 1 MAKNTF--EYNDDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEILDNSVDEALGGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDHIIVTIHKDNSISVKDKGRGMPTGMH-KMGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G +YE F N G L G N TGT + F P + Sbjct: 117 HGVGASVVNALSEWLTVTIKRDGIVYEQRFENGGKPVTTLEKIG-TTNQTGTTIHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +N++TL RLRE +FL ++I L D+R+ + Y+ GIEAFV+YL+ Sbjct: 176 TIFSTTTYNFETLCERLRESAFLLKGLKIELNDERN--SVKEVFHYESGIEAFVTYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + + +G+++ I ID A ++NDGY E +L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSLH-NVVSFEGAQNGIEIDFAFQFNDGYSETILSFVNNVRTKDGGTHEAGAKTAMTRI 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 293 FNEYARKVNLLKEKDKNLDGSDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V++ L+ +LEE+P + ++VKK + A R+AAR+AR+ + +K A L GKL Sbjct: 353 SVVSEHLAYFLEENPETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+E++LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNEIYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIHAIGGGVG-PDFSVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVF 531 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYL---INQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY +++G + V + ++ L I + G ++ + L Sbjct: 532 IALPPLYKVSKGTGKKEVLEYAWSDEELQGAIQKIGRGYTIQRYKGLGEMNADQLWET-- 589 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 ++ + + + + S +A L E Sbjct: 590 ---TMNPDTRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIESHVAFGLEEDPNILEN 645 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + ++ + S + ++ + Sbjct: 368 ETSSMLVKKSIKAFQAREAARKAREDARSGKKRKRSDAMLSGKLTPAQSRNPQKNEIYLV 427 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QAV+ V N E + ++ ++ ++ I + Sbjct: 428 EGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGPDFS 487 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + I ++ + + K Sbjct: 488 VEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEFGKVFIALPPLYKVSKGTGKK 547 Query: 715 KIT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IGR G ++QRYKGLGEMNA QLWETT+NPDTR+L+RV+I DA Sbjct: 548 EVLEYAWSDEELQGAIQKIGR-GYTIQRYKGLGEMNADQLWETTMNPDTRTLIRVRIDDA 606 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+ + Sbjct: 607 ARAERRVTTLMGDKVEPRRKWIESH 631 >gi|270289888|ref|ZP_06196114.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4] gi|270281425|gb|EFA27257.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4] Length = 648 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 290/598 (48%), Positives = 396/598 (66%), Gaps = 11/598 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A+ I V + D S TVSDNGRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFANKIDVVVEKDNSITVSDNGRGIPVDIQKKTGKPALETVYTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173 VSGGLHGVG SVVNALS+ L R+ R+G IY + F G + P+ V G N GT V Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIV 179 Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 F+P DIF F+ + L+ R+REL+FLN ++I+L D R +P E Y+GGI + Sbjct: 180 HFVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMRPEKPTEDDFLYEGGIRHY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL++ K+ + PI ++G I++++AM++ +GY +L FTNNI +GGTH G Sbjct: 240 VEYLNKGKEVIFPEPIYVEGITKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALTR I Y + + K++ + GDD REG T+V+S+K PDP+F QTK KL +S+ Sbjct: 300 KRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R+ V + S +L E+P A+ IV K A+ R AA+RAR++TR+K L++ +LPG Sbjct: 360 RTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGLELNNLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLAD + +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A D++L+++ Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +L TALGTG G+D FD+ K YHK+IIMTDADVDGAHIRTLLLT F+R M +I G Sbjct: 480 EIRSLFTALGTGFGED-FDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 ++YI +PPLY + +GK ++Y+ +E LE L S S + + G + L Sbjct: 539 YVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 15/223 (6%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ ++ + QA++ + N E V ++ + + Sbjct: 431 ISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANEEIRSLFTALGT 490 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + + N L+ V + + I + + L Sbjct: 491 GFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGYVY-IAQPPLYQ 549 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRS 761 + G IK L+ + +S +QRYKGLGEM+A QLWETT+NP+ R Sbjct: 550 VRQGKMIKYIDSDEELEAVLGQ----LSPSPKPVIQRYKGLGEMDAEQLWETTMNPENRR 605 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV D A+ F LMGD+VEPRR+FI++N++ LDI Sbjct: 606 LLRVSADDLDAANGDFEMLMGDKVEPRRKFIEDNAVFVENLDI 648 >gi|9622089|gb|AAF89615.1|AF167433_1 gyrase B [Thermus thermophilus] Length = 634 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 270/585 (46%), Positives = 370/585 (63%), Gaps = 7/585 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA +I++LKGL+ V+ RP+MYIG T G G HH+ E+LDNA+DE+L GYA I V L Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGT-GVEGYHHLFKEILDNAVDEALAGYATEILVRL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV DNGRGIP DL EEG A EVI LH+GGKF Q +YKVSGGLHGVG SVV Sbjct: 61 NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQDF 187 NALS W + + REG + ++F G + PL V G A TGT VTF P +IF F Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + ++ RLRE+++L + +++ D++ + KGG+ +F L + L + P Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I+G+ + +++ GY+ +L + N IP +DGGTHL+ +SA +R + Y +K+ Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 +K+ GDD EG +V+S+K+P+P+F QTK KL++ E + V V + L Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 LEE+P AK + +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P+++EL Sbjct: 359 LEENPRIAKAVYEKALRAAQAREAARKARELVRRQNPLESDELPGKLADCQTENPEEAEL 418 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-- 485 F+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ +++A+G + Sbjct: 419 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKAGLSKALKNAEVRAMVSAIGVAVGG 478 Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 G+ FD+ LRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI G +YI +PPLY + Sbjct: 479 DGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIERGHVYIAQPPLYRL 538 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 GK ++Y+ +E L+ L G ++ L Sbjct: 539 QVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQLWE 583 Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats. Identities = 49/174 (28%), Positives = 77/174 (44%) Query: 630 INVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKY 689 N + + ++ + E + ++ V + F + Sbjct: 461 KNAEVRAMVSAIGVAVGGDGEAHFDLEGLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMR 520 Query: 690 KRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 I + + L + L + + K +QR+KGLGEMN Q Sbjct: 521 PLIERGHVYIAQPPLYRLQVGKKVEYLYSDEELQARLKELEGKHYEVQRFKGLGEMNPEQ 580 Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 LWETT+NP+ R L RV++ DA +A +LF +LMG EV PRREFI+E++ + LDI Sbjct: 581 LWETTMNPEKRVLKRVELQDALEASELFEKLMGQEVAPRREFIEEHARYAELDI 634 >gi|196044488|ref|ZP_03111723.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108] gi|206975544|ref|ZP_03236457.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97] gi|229197705|ref|ZP_04324425.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293] gi|196024523|gb|EDX63195.1| DNA topoisomerase IV, B subunit [Bacillus cereus 03BB108] gi|206746446|gb|EDZ57840.1| DNA topoisomerase IV, B subunit [Bacillus cereus H3081.97] gi|228585782|gb|EEK43880.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1293] gi|324327495|gb|ADY22755.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 654 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 402/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y ++ L++ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|229031253|ref|ZP_04187259.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271] gi|228730011|gb|EEL80985.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1271] Length = 654 Score = 568 bits (1463), Expect = e-159, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|197303041|ref|ZP_03168089.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC 29176] gi|197297896|gb|EDY32448.1| hypothetical protein RUMLAC_01768 [Ruminococcus lactaris ATCC 29176] Length = 640 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 257/626 (41%), Positives = 365/626 (58%), Gaps = 17/626 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +YDA SI +L+GL+AV+ RP MYIG GL+H++YE++DNA+DE L G+ Sbjct: 1 MSRKT---TYDAGSIAVLEGLEAVRVRPGMYIGSVS-TKGLNHLVYEIVDNAVDEHLAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL DGS TVSDNGRG+P D+H++ GISAA ++ T LHAGGKF+ +YK SGGL Sbjct: 57 CTEIHVTLEKDGSATVSDNGRGVPVDMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175 HGVG SVVNALS+++ ++I R+G I+ + GI L G TGT V F Sbjct: 116 HGVGSSVVNALSAYMDVKISRDGYIHHDRYERGIPVIELEDGLLPKIGKT-RKTGTTVNF 174 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LP IF F + ++ RL E ++LN + I DKR +I GI F++ Sbjct: 175 LPDDTIFEKTRFKAEEIKSRLHETAYLNPKLTIFFEDKRQGSEEKIEYHEPEGIIGFITD 234 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ K+ L PI +G D I +++A+++ + +HENV+ F NNI +GGTHL+G ++ Sbjct: 235 MNHKKEVLH-EPIYFKGEADGIGVEVALQYVNEFHENVVGFCNNIYNAEGGTHLTGFKTT 293 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 T + Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 294 FTTVMNQYARELGVLKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKA 353 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V + + + + + K ++ A+ +R RA+ K GKLA Sbjct: 354 VGKVTGEEIVRFFDRNIETLKTVLSSAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLA 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +C RDPKK E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI Sbjct: 413 NCESRDPKKCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIK 472 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 T+I A G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G Sbjct: 473 TMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEG 532 Query: 533 FLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 +YI PPLY + +Y+ D+++LE Y N + ++ + + ++ + Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDDKALEKYRKNHTGPFTLQRYKGLGEMDAEQLWETTL 592 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617 D ++ KL++ + E + Sbjct: 593 DPERRLLKLVEIEDARMASSVTEMLM 618 Score = 131 bits (330), Expect = 5e-28, Method: Composition-based stats. Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 11/100 (11%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 G++ + D RK ++QRYKGLGEM+A QLWETTL+P+ R LL+ Sbjct: 547 KKGEEEYLYD-----DKALEKYRKNHTGPFTLQRYKGLGEMDAEQLWETTLDPE-RRLLK 600 Query: 765 -VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 V+I DA A + LMG EV PR+ FI EN+ + LDI Sbjct: 601 LVEIEDARMASSVTEMLMGTEVPPRKAFIYENATEAELDI 640 >gi|212639275|ref|YP_002315795.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1] gi|212560755|gb|ACJ33810.1| DNA topoisomerase IV subunit B [Anoxybacillus flavithermus WK1] Length = 657 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 257/593 (43%), Positives = 375/593 (63%), Gaps = 16/593 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I VT+ Sbjct: 10 TYNEDTIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGYGKRIIVTI 68 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 69 HNDQSISVQDEGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 127 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS WL++ I R+G IY F + G L G TGT++ F P IFS F Sbjct: 128 NALSEWLEVTIHRDGFIYYQRFEHGGKPVTTLEKIGVTK-QTGTKIQFKPDPTIFSTTTF 186 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 +++T+ RLRE +FL ++I L D+R+ T +Y+ GIEAFV YL+ K L Sbjct: 187 HHETISERLRESAFLLKGLKIELYDERTG--LCDTFYYENGIEAFVQYLNEEKDVLHP-V 243 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + G + +I ++ A +++DGY EN+L F N++ KDGGTH G ++A+TR Y K Sbjct: 244 VFFTGEQSDIEVEFAFQFHDGYAENMLSFVNHVRTKDGGTHEIGAKTAMTRVFNEYARKV 303 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +++ G D REG ++++S+++P+ +F QTK KL + E RS VE+ V++ L+ Sbjct: 304 GLLKERDKNLEGTDIREGLSAIISVRIPEALLQFEGQTKGKLGTPEARSAVEAVVSEKLT 363 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423 +L E+P A +++KK + A R+AAR+AR+ + +K L GKL R+P+ Sbjct: 364 YFLNENPDIATLLIKKAIRAFQAREAARKAREEARSGKKRKGKEHVLSGKLTPAQTRNPQ 423 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI T+I A+G Sbjct: 424 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGG 483 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G D F ++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G ++I PPLY Sbjct: 484 GVGAD-FSLDDIHYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYK 542 Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 ++ + + ++Y +E L+ L I+ + + + ++ Sbjct: 543 VSKKVGKKEVVEYAWTDEQLQSILKKIGKGYTIQRYKGLGEMNADQLWETTMN 595 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 43/95 (45%), Positives = 64/95 (67%) Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + + + ++ L +I KG ++QRYKGLGEMNA QLWETT+NP+TR Sbjct: 540 LYKVSKKVGKKEVVEYAWTDEQLQSILKKIGKGYTIQRYKGLGEMNADQLWETTMNPETR 599 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV+I DA++A+ + LMGD+VEPRR++I+ N Sbjct: 600 TLIRVRIDDAARAERRVTTLMGDKVEPRRKWIESN 634 >gi|302386253|ref|YP_003822075.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum WM1] gi|302196881|gb|ADL04452.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum WM1] Length = 639 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 260/641 (40%), Positives = 380/641 (59%), Gaps = 14/641 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DNA+DE L GY D I Sbjct: 1 MAKTQYNADSITVLEGLEAVRKRPGMYIGSV-GTKGLNHLIYEIVDNAVDEHLAGYCDQI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV D GRGIP ++H + G+SA V+++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVKDAGRGIPVEMHSK-GVSAERVVLSTLHAGGKFDNDAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179 SVVNALS+ +K+++ + G I+ + GI L G +TGTE+ FLP Sbjct: 119 SSVVNALSAHMKIKVYKNGLIHYDEYERGIPTVELVDGLLPTLGKTK-ETGTEINFLPDG 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F D L+ RL E ++LN S++I +KR E + GI A+V L+ Sbjct: 178 EIFEKTRFKADWLKSRLHETAYLNPSLKIIYRNKRQGEEETVVYHEPDGIIAYVRELNAG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + P+ +G+ D + I++A+++ D + EN+L F NNI ++GGTHL+G ++ T+ Sbjct: 238 KEAVH-DPVYFKGTMDKVEIEVALQFVDTFEENILGFCNNIFTQEGGTHLAGFKTRFTQM 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V+++K PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDANFTGADTRNGLTAVVAVKHPDPIFEGQTKTKLASADATKAVFTV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 D L + + + K ++ ++ +R A +A+ K S GKLA+C Sbjct: 357 TGDELQRYFDRNLEVLKAVIGCAEKSAKIRKAEEKAKTNMLSKSRFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+ +K E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 REAEKCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 G G + + FDI+KLRYHKII+MTDADVDG+HI TLLLTF +R MP LI+NG ++I Sbjct: 476 TFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIYNGHVFI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE+ LE Y + ++ + + ++ +D Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRRTHTGEFTLQRYKGLGEMDAEQLWETTLDPER 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ K ++ E + S V + A Sbjct: 596 RVLKQVEIEDARMASEITEMLMGSDVLPRRQFIYEHADEAE 636 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 17/269 (6%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + E++ + L S + + FI + K Sbjct: 378 CAEKSAKIRKAE-EKAKTNMLSKSRFSFDSNGKLANCESREAEKCEIFIVEGDSAGGSAK 436 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + + + N E V +++ +N + + + S + Sbjct: 437 TARNRQYQAIL--PIRGKILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDISKL 494 Query: 663 LVKRIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKIT 717 +I V + F + + I++ + + +I G++ + Sbjct: 495 RYHKIILMTDADVDGSHIDTLLLTFLYRFMPELIYNGHVFIAMPPLFKVIPKRGEEQYLY 554 Query: 718 GPCSLLDTIFSIGRKG----ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L R+ ++QRYKGLGEM+A QLWETTL+P+ R L +V+I DA A Sbjct: 555 DEKEL-----ERYRRTHTGEFTLQRYKGLGEMDAEQLWETTLDPERRVLKQVEIEDARMA 609 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSALD 802 ++ LMG +V PRR+FI E++ + +D Sbjct: 610 SEITEMLMGSDVLPRRQFIYEHADEAEID 638 >gi|298345811|ref|YP_003718498.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063] gi|304390485|ref|ZP_07372438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235872|gb|ADI67004.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC 43063] gi|304326241|gb|EFL93486.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 686 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 261/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 YDA I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D Sbjct: 17 EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VTL DG V+DNGRGIP H E EV+MT LHAGGKF SY VSGGLHGV Sbjct: 76 IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G+SVVNALS+ + +KR+G + + F N G + PL G +TGT F P +IF Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221 +F+Y+TL+ R ++++FLN ++I+L D+R R + Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITLTDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254 Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 + Y+ G+ +V +++ + ++ ++ + +++++A++W Y E++ Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G R+ALT + + K ++ GDDCREG T+V+S+K+ Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL ++E R+ V+ V L W + HP E K I+ K A R+AAR+A Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD E+FLVEGDSAGGSA GR +QAILPLRG Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASNCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI NG +++ PPLY + + +D +++ L + Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613 Query: 576 CDSK 579 + Sbjct: 614 KEGG 617 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A +LWETT++P R L +V + +A+ AD++FS LMG++V RR FIQ N Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 678 AQDVRFLDI 686 >gi|160938079|ref|ZP_02085436.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC BAA-613] gi|158439073|gb|EDP16828.1| hypothetical protein CLOBOL_02973 [Clostridium bolteae ATCC BAA-613] Length = 639 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 257/622 (41%), Positives = 369/622 (59%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+ADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DNA+DE L G+ + Sbjct: 1 MAKEQYNADSITVLEGLEAVRKRPGMYIGGV-GSKGLNHLIYEIIDNAVDEHLAGFCSSV 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP LHK+ GISAA ++++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVGLHKK-GISAARIVLSTLHAGGKFDNDAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSS 179 SVVNALS+ + L++ R+G IY + G L V G +TGT + FLP Sbjct: 119 SSVVNALSAHMDLKVYRDGCIYHDEYEKGRPVIKLENGLLPVIGKT-RETGTCINFLPDG 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 DIF F + L+ RL E ++LN ++ + +KR E ++ GI A+V L+ Sbjct: 178 DIFEKTRFKAEWLKSRLHETAYLNPNLTLYYENKRPGEGEKVAFHEPEGIVAYVRELNSG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ PI +G+ D + ++ A+++ D + EN+L F NNI ++GGTHL+G ++ T Sbjct: 238 KTPVH-DPIYFKGTVDKVEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTAL 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K + G D R G T+V+++K PDP F QTK KL S++ V + Sbjct: 297 INSYAREIGILKDKDTNFTGADTRNGMTAVIAVKHPDPIFEGQTKTKLASADATKAVFTV 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 D L + + + K ++ ++ +R A +A+ K S GKLA+C Sbjct: 357 TGDELQLYFDRNVEVLKGVIGCAEKSAKIRRAEEKAKTNMLTKSKFSFDS-NGKLANCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD + E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDASRCEIFIVEGDSAGGSAKTARNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 G G + + FDI KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI Sbjct: 476 TFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE+ LE Y + ++ + + ++ +D Sbjct: 536 AMPPLFKVIPKRGEEQYLYDEKELERYRKTHTGDFTLQRYKGLGEMDAEQLWETTLDPER 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKRVEIEDARMATEITEMLM 617 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 14/191 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676 + N E V +++ +N + + + D ++ V + Sbjct: 453 ILNVEKASMDKVLANAEIKTMINTFGCGFSEGYGNDFDITKLRYDKIILMTDADVDGSHI 512 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRK--- 732 F + + I+ + + +I G++ + L RK Sbjct: 513 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVIPKRGEEQYLYDEKEL-----ERYRKTHT 567 Query: 733 -GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 ++QRYKGLGEM+A QLWETTL+P+ R L RV+I DA A ++ LMG EV PRR+F Sbjct: 568 GDFTLQRYKGLGEMDAEQLWETTLDPERRVLKRVEIEDARMATEITEMLMGTEVGPRRQF 627 Query: 792 IQENSLPSALD 802 I E++ + +D Sbjct: 628 IYEHADEAEID 638 >gi|313112547|ref|ZP_07798211.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310625129|gb|EFQ08420.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 572 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 264/564 (46%), Positives = 363/564 (64%), Gaps = 21/564 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ + Y+A IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY Sbjct: 11 AETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 D I V + D V+DNGRGIP D+ + G+ A V+ T LHAGGKF YKV+GG Sbjct: 70 DHIEVKILKDNIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178 LHGVG SVVNA S WL + ++R+G+ YE +F G D PL G+ A TGT VTF P Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGHEYEQTFRRGDPDGPLKCIGTVADGVTGTRVTFKPD 189 Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------EPREITMF 224 ++F +++DTL+ RLRE SFLN+ V+I+L D+R R M Sbjct: 190 PEMFRDTTVYDFDTLEKRLREESFLNAGVKITLTDEREMYTPVLEDGKEGEPCYRTEVMC 249 Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 Y+GGI++FV+Y R L + I ++G D ++A+++N Y+E +L F NN+ Sbjct: 250 YEGGIKSFVTYLGEKRKLDVLHPNVIYLKGQTDRGMAEIALQYNSSYNELLLSFANNVNT 309 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 DGGTH G +++LTR Y K ++ G D REG V+S+K+ + F Q Sbjct: 310 PDGGTHEEGFKNSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E+R++V + V L + EE+P AK I +K A+ R AA++AR+L RRK Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR QAILPL GK+LNVE+ Sbjct: 430 SALETSRMPGKLADCREKDPSRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+ + ++ ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF Sbjct: 490 ARADKIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548 Query: 523 RQMPSLIHNGFLYIIKPPLYGITR 546 R M LI G +Y+ +PPL+ + + Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQK 572 >gi|30263545|ref|NP_845922.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Ames] gi|47778193|ref|YP_020292.2| DNA topoisomerase IV subunit B [Bacillus anthracis str. 'Ames Ancestor'] gi|49186397|ref|YP_029649.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Sterne] gi|65320876|ref|ZP_00393835.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bacillus anthracis str. A2012] gi|165871023|ref|ZP_02215674.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488] gi|167636468|ref|ZP_02394766.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442] gi|167640560|ref|ZP_02398822.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193] gi|170688415|ref|ZP_02879623.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465] gi|170708114|ref|ZP_02898561.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389] gi|177652461|ref|ZP_02934928.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174] gi|190565061|ref|ZP_03017982.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I] gi|227813571|ref|YP_002813580.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684] gi|228916227|ref|ZP_04079797.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228934869|ref|ZP_04097700.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229604304|ref|YP_002867790.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248] gi|254686164|ref|ZP_05150023.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. CNEVA-9066] gi|254726069|ref|ZP_05187851.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. A1055] gi|254738637|ref|ZP_05196340.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Western North America USA6153] gi|254744805|ref|ZP_05202483.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Kruger B] gi|254752955|ref|ZP_05204991.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Vollum] gi|254759227|ref|ZP_05211253.1| DNA topoisomerase IV subunit B [Bacillus anthracis str. Australia 94] gi|301055084|ref|YP_003793295.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI] gi|30258180|gb|AAP27408.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Ames] gi|47551898|gb|AAT32767.2| DNA topoisomerase IV, B subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180324|gb|AAT55700.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. Sterne] gi|164713234|gb|EDR18760.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0488] gi|167511428|gb|EDR86812.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0193] gi|167528127|gb|EDR90919.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0442] gi|170126922|gb|EDS95802.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0389] gi|170667585|gb|EDT18340.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0465] gi|172082135|gb|EDT67202.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0174] gi|190564378|gb|EDV18342.1| DNA topoisomerase IV, B subunit [Bacillus anthracis Tsiankovskii-I] gi|227007627|gb|ACP17370.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. CDC 684] gi|228824769|gb|EEM70570.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228843425|gb|EEM88503.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268712|gb|ACQ50349.1| DNA topoisomerase IV, B subunit [Bacillus anthracis str. A0248] gi|300377253|gb|ADK06157.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis str. CI] Length = 654 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD++ KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008] gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008] Length = 633 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 306/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G + E+SF G + L G A TGT V F P ++IF Sbjct: 119 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAS-GTGTTVIFKPDAEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLISFITFLNENKEAIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V +GL Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 581 Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR G ++QRYKGLGEMN QLWETT+NP+ R++L+V + D+ +AD +F+ L Sbjct: 550 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632 >gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44] gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44] Length = 645 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 306/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 13 MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 71 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 72 EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 130 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G + E+SF G + L G A TGT V F P ++IF Sbjct: 131 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 189 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 190 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 249 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 250 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 309 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V +GL Sbjct: 310 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 369 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 370 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 429 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 430 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 489 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 490 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 548 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 549 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 593 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 446 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 502 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 503 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 561 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR G ++QRYKGLGEMN QLWETT+NPD R++L+V + D+ +AD +F+ L Sbjct: 562 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVL 621 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 622 MGDKVEPRRKFIEDNAKYVRNLD 644 >gi|270293047|ref|ZP_06199258.1| DNA gyrase subunit B [Streptococcus sp. M143] gi|270279026|gb|EFA24872.1| DNA gyrase subunit B [Streptococcus sp. M143] Length = 648 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQSKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|295115103|emb|CBL35950.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium SM4/1] Length = 639 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 257/622 (41%), Positives = 374/622 (60%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YDADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DN++DE L G I Sbjct: 1 MGKAQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECTSI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP ++HK+ G+SA V+++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179 SVVNALS L ++I + G I+ ++ GI L V G +TGT + FLP Sbjct: 119 SSVVNALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGKTK-ETGTCINFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F + L+ RL E ++LN ++ I ++R+ E +I GI A+V ++ Sbjct: 178 TIFEKTKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIVYSEPDGIIAYVKEINAG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ PI +GS + I ++ A+++ D + EN+L F NNI ++GGTHL+G ++ T Sbjct: 238 KTPVH-EPIYFKGSMEGIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTML 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V++IK PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATKAVFTL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L + + + K ++ ++ +R A +A+ K S GKL++C Sbjct: 357 AGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDS-NGKLSNCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI+KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI G +YI Sbjct: 476 AFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE++LE Y + ++ + + ++ ++ Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKALEKYKKTHAGGFTLQRYKGLGEMDAEQLWETTLNPEN 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V +++ +N + + + S + +I + ++GS Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKLRYNKII--LMTDADVDGS 510 Query: 681 SIFSFGSKYK-RIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFSIGRK- 732 I + + R + I E ++ I + G++ + + +K Sbjct: 511 HIDTLLLTFLYRFMPDLITEGHVYIAMPPLFKVIPKKGEEQYLYD-----EKALEKYKKT 565 Query: 733 ---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 G ++QRYKGLGEM+A QLWETTLNP+ R L +V+I DA A ++ LMG +V PRR Sbjct: 566 HAGGFTLQRYKGLGEMDAEQLWETTLNPENRVLKQVEIEDARMASEITEMLMGSDVPPRR 625 Query: 790 EFIQENSLPSALD 802 +FI +++ + +D Sbjct: 626 QFIYDHAEEAEID 638 >gi|49478289|ref|YP_037677.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141939|ref|YP_084890.1| DNA topoisomerase IV subunit B [Bacillus cereus E33L] gi|196034146|ref|ZP_03101556.1| DNA topoisomerase IV, B subunit [Bacillus cereus W] gi|196038513|ref|ZP_03105822.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99] gi|218904724|ref|YP_002452558.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820] gi|228928649|ref|ZP_04091685.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947212|ref|ZP_04109506.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986686|ref|ZP_04146816.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229092562|ref|ZP_04223718.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42] gi|229123114|ref|ZP_04252321.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201] gi|229157170|ref|ZP_04285250.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342] gi|49329845|gb|AAT60491.1| topoisomerase IV, subunit B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975408|gb|AAU16958.1| topoisomerase IV, subunit B [Bacillus cereus E33L] gi|195993220|gb|EDX57178.1| DNA topoisomerase IV, B subunit [Bacillus cereus W] gi|196030921|gb|EDX69519.1| DNA topoisomerase IV, B subunit [Bacillus cereus NVH0597-99] gi|218535726|gb|ACK88124.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH820] gi|228626234|gb|EEK82981.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 4342] gi|228660408|gb|EEL16041.1| DNA topoisomerase 4 subunit B [Bacillus cereus 95/8201] gi|228690849|gb|EEL44624.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-42] gi|228773017|gb|EEM21453.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812459|gb|EEM58786.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830968|gb|EEM76569.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 654 Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD++ KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDSVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|47570276|ref|ZP_00240926.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241] gi|47553067|gb|EAL11468.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9241] Length = 654 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 401/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDAIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929] gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929] Length = 647 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 288/652 (44%), Positives = 413/652 (63%), Gaps = 15/652 (2%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADEKETKKELAHEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ITVT+ D S TV+D+GRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174 VSGGLHGVG SVVNALSS L + + R+G +Y M F G + + V + + GT+V Sbjct: 120 VSGGLHGVGASVVNALSSELDVEVTRDGKVYYMDFSRGHVKTKMKVVREVSDDLHGTKVH 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FLP DIF ++ L RLREL+FLN ++I ++D R +P E Y+GGI+ +V Sbjct: 180 FLPDPDIFRETTTYDIKVLTARLRELAFLNKGLRIVVLDLRPEKPTEQDFMYEGGIKHYV 239 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLD K+ L+ PI ++G + I++++A+++ + YH ++ FTNNI +GGTH G + Sbjct: 240 EYLDNSKETLLDEPIYVEGVMNGITVEVAIQYTNDYHNTLMTFTNNIHTYEGGTHEEGFK 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR I Y K+ K ++ ++ G+D REG T+V+SIK PDP+F QTK KL +S+ R Sbjct: 300 RALTRVINDYARKNKLLKDNEPNLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + +D + +L E+P A+ IV + + AS R AA+RAR++TR+K L+I++LPGK Sbjct: 360 TVTDRIFSDHFTKFLMENPKMARKIVDRGMLASKARSAAKRAREVTRKKSGLEISNLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LAD + +DPK SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++E Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANEE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G+D FD++K+ YHK+IIMTDADVDGAHI+TLLLT +R M LI GF Sbjct: 480 IRSLFTAMGTGFGED-FDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGF 538 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFID 592 +Y+ +PPLY + +GK +Y+ ++ L +L S + + G + L + Sbjct: 539 VYVAQPPLYQVRQGKMSRYIDSDDDLNAFLGTLQPSPKPVIQRYKGLGEMDAEQLWDT-- 596 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + E + + + + + N Sbjct: 597 ---TMNPENRHLLRVESSDAAEADKVFSMLMGDKVEPRREFIEDNATFVENL 645 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++AD +FS LMGD+VEPRREFI++N Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEADKVFSMLMGDKVEPRREFIEDN 638 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 639 ATFVENLDV 647 >gi|227541366|ref|ZP_03971415.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866] gi|227182917|gb|EEI63889.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866] Length = 691 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 289/665 (43%), Positives = 388/665 (58%), Gaps = 54/665 (8%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+++ QN YDA SI +L+GL+AV+KRP MYIG T G GLHH+++EV+DN+IDE Sbjct: 1 MAESQQNLSPEHHDYDATSITVLEGLEAVRKRPGMYIGST-GRRGLHHLVWEVVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD + V L+ DGS V+DNGRGIP ++H + G EV+MT+LHAGGKFN SYK Sbjct: 60 ALAGFADKVDVVLHEDGSVEVTDNGRGIPVEMH-QTGRPTVEVVMTQLHAGGKFNNDSYK 118 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG+SVVNALS+ ++ IKR+G + F N + D L G A TGT + F Sbjct: 119 VSGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPD-DLEKGGKA-RGTGTRIRF 176 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------- 222 P ++IF +FNY T+ RL++++FLN V I L DKR E Sbjct: 177 WPDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHIIAEEEKPSLEADESLLEA 236 Query: 223 ------------------------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQG 252 Y G+ +V +L++ K L + + Q Sbjct: 237 DSLSLDEVDEKLAEKPQAEEPEIPSERSVVFHYPDGLIDYVKFLNKKKTALHPTIVGFQD 296 Query: 253 SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKK 312 S D++++++A++WN Y ENV F N I +GGTH G R+ALT + Y K+ Sbjct: 297 SEDDLALEVALQWNTSYKENVFTFANTIATVEGGTHEEGFRAALTTIMNKYARDHKLMKE 356 Query: 313 DKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHP 372 + GDDCREG ++V+S+K+ DP+F QTK KL ++ V+S V+ VN L+ W E +P Sbjct: 357 KDPKLTGDDCREGLSAVVSVKVGDPQFEGQTKTKLGNTNVKSFVQRVVNTHLTHWFEANP 416 Query: 373 LEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432 EAKIIV+K ++ R AAR+AR+L RRK D+ LPGKLADC +DP+KSEL++VEG Sbjct: 417 AEAKIIVQKASSSAQARLAARKARELVRRKSPTDMGGLPGKLADCRSKDPEKSELYIVEG 476 Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 DSAGGSAK GR QAILPLRGKILNVE+AR D+ + EI +ITALGTG+ D FDI Sbjct: 477 DSAGGSAKAGRDSMFQAILPLRGKILNVEKARLDRAFKNAEIQAIITALGTGV-HDEFDI 535 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQ 551 +KLRYHKI++M DADVDG HI TLLLT FR MP+LI G +Y+ PPLY + K Sbjct: 536 SKLRYHKIVLMADADVDGQHIATLLLTLLFRFMPALIEEGHVYLANPPLYKLKWQKGDPG 595 Query: 552 YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKT 611 + ++ +D L + D N + D Sbjct: 596 FAYSDQERDDLLAEGLEAGRKINTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLE 655 Query: 612 FIEQA 616 E+A Sbjct: 656 DAERA 660 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 49/88 (55%), Positives = 60/88 (68%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL GRK I+ +QRYKGLGEMNAS+LWETTL+PD R+L RV + DA +AD+L Sbjct: 605 DLLAEGLEAGRK-INTDDGIQRYKGLGEMNASELWETTLDPDFRTLRRVDLEDAERADEL 663 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI N+ LD+ Sbjct: 664 FSILMGDDVVARRTFITRNAKDVRFLDV 691 >gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745] gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745] Length = 633 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 307/585 (52%), Positives = 416/585 (71%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G + E+SF G + L G A TGT V F P ++IF Sbjct: 119 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V +GL Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M LI +G +YI +PPLY I Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 581 Score = 182 bits (461), Expect = 3e-43, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I + L I G + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMRQLIEDGHVY-IAQPPLYQIKKGKSHWYVYSDA 549 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR G ++QRYKGLGEMN QLWETT+NP+ R++L+V + A +AD +F+ L Sbjct: 550 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPENRTILQVSLDGAIEADKIFTVL 609 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632 >gi|322376370|ref|ZP_08050863.1| DNA gyrase, B subunit [Streptococcus sp. M334] gi|321282177|gb|EFX59184.1| DNA gyrase, B subunit [Streptococcus sp. M334] Length = 648 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 408/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A+ I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFANHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + ++PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO] gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933] gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502] gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733] gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410] gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408] gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12] gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15] gi|258615266|ref|ZP_05713036.1| DNA gyrase subunit B [Enterococcus faecium DO] gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68] gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6] gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF] gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1] gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039] gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162] gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071] gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980] gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636] gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679] gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317] gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04] gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C] gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082] gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A] gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B] gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01] gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO] gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933] gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502] gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733] gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410] gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408] gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12] gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15] gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68] gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6] gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF] gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071] gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636] gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679] gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317] gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039] gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162] gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980] gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1] gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01] gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B] gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A] gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C] gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04] gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082] Length = 648 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 291/627 (46%), Positives = 415/627 (66%), Gaps = 12/627 (1%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEERSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEV 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKV Sbjct: 60 LAGFATKIHVIIEKDNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +++ +EGN+Y + G + + L + + GT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKII-EQTDRHGTTVHFT 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ F++ L R+REL+FLN ++IS+ DKR EP Y GGI+++V Y Sbjct: 179 PDPEIFTETTEFDFSKLATRIRELAFLNRGMRISIEDKREEEPVINEYHYDGGIKSYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ +K + P+ ++G + +I+++++M++ DGYH N++ F NNI +GGTH SG ++A Sbjct: 239 LNANKTVIFPEPVYLEGEQQDIAVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y K K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+V Sbjct: 299 LTRVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTV 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 + ++ +L E+P + IV+K L AS R AA+RAR++TRRKG L+I++LPGKLA Sbjct: 359 TDRLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+K ELF+VEGDSAGGSAKQGR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++Y Sbjct: 479 SLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLYG+ +GK++ YV+ ++ E+ L L K + + +DD Sbjct: 538 IAQPPLYGVKQGKNITYVQPGKNAEEELKQVV----ASLPASPKPSVQRYKGLGEMDDHQ 593 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A+ + Sbjct: 594 LWETTMDPSNRMMARVSVDDAIAADQI 620 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P R + RV + DA AD +F LMGD VEPRR FI+E Sbjct: 579 SVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQIFEMLMGDRVEPRRAFIEE 638 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 639 NAHYVKNLDI 648 >gi|126652425|ref|ZP_01724598.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905] gi|126590846|gb|EAZ84960.1| DNA topoisomerase IV subunit B [Bacillus sp. B14905] Length = 658 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 264/662 (39%), Positives = 388/662 (58%), Gaps = 16/662 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ S Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V ++ D S +V D GRG+PT +H + G E+I T LHAGGKF Q YK SGGL Sbjct: 60 GSHIIVKIHKDQSISVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS++L++ I R+G Y F + G L G TGT V FLP Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGQTK-QTGTLVHFLPDE 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +NYDTL RLRE +FL ++I LID+R E + FY+ GIEAFV+YL+ Sbjct: 178 TIFSVTKYNYDTLAERLRESAFLLKGLKIELIDER-EEGKNDMFFYENGIEAFVAYLNEE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L ++G +D+I ++ A ++NDGY E +L F NN+ +DGGTH +G ++ALTR Sbjct: 237 KDVLHP-VKYVEGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y K K +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 296 FNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V++ + LEE+ + +V+K + A VR+AAR+AR+ +K L GKL Sbjct: 356 SVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLT 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+ ++EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ ++ ++EI Sbjct: 416 PAQSRNAARNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIS 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G F + Y+K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 476 TIIHAIGAGVG-TDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVF 534 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y E L+ + ++ + + + + Sbjct: 535 IALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTTM 594 Query: 592 D-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + D + ++ + ++ + + AN L + E Sbjct: 595 NPDTRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDANILENEFIQQE 654 Query: 651 KS 652 + Sbjct: 655 EG 656 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 11/260 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 R + ++ + + ++ L S+N RN + ++ Sbjct: 379 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRNAARN---ELYLVEGDSA 435 Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + QA++ V N E + ++ +++ ++ I + + Sbjct: 436 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 495 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716 + +V + F + I + ++ + + K ++ Sbjct: 496 YNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYKVSKGTGKKEVIEY 555 Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L I +G KG +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D ++A+ Sbjct: 556 AWTENDLQKAIKQVG-KGYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVTIEDGARAER 614 Query: 776 LFSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ N Sbjct: 615 RVTTLMGDKVEPRRKWIEAN 634 >gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501] gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501] Length = 648 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 291/627 (46%), Positives = 416/627 (66%), Gaps = 12/627 (1%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MTEERSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEV 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKV Sbjct: 60 LAGFATKIHVIIEKDNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +++ +EGN+Y + G + + L + + GT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKII-EQTDRHGTTVHFT 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ F++ L R+REL+FLN ++IS+ DKR EP Y+GGI+++V Y Sbjct: 179 PDPEIFTETTEFDFSKLATRIRELAFLNRGMRISIEDKREEEPVINEYHYEGGIKSYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ +K + P+ ++G + +I+++++M++ DGYH N++ F NNI +GGTH SG ++A Sbjct: 239 LNANKTVIFPEPVYLEGEQQDIAVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y K K++ ++ G+D REG T+V+SIK PDP+F QTK KL +SEVR+V Sbjct: 299 LTRVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTV 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 + ++ +L E+P + IV+K L AS R AA+RAR++TRRKG L+I++LPGKLA Sbjct: 359 TDRLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS DP+K ELF+VEGDSAGGSAKQGR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G+D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++Y Sbjct: 479 SLFTAMGTGFGED-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLYG+ +GK++ YV+ ++ E+ L L K + + +DD Sbjct: 538 IAQPPLYGVKQGKNITYVQPGKNAEEELKQVV----ASLPASPKPSVQRYKGLGEMDDHQ 593 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A+ + Sbjct: 594 LWETTMDPSNRMMARVSVDDAIAADQI 620 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QRYKGLGEM+ QLWETT++P R + RV + DA AD +F LMGD VEPRR FI+E Sbjct: 579 SVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQIFEMLMGDRVEPRRAFIEE 638 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 639 NAHYVKNLDI 648 >gi|229829522|ref|ZP_04455591.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM 14600] gi|229791953|gb|EEP28067.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles DSM 14600] Length = 642 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 297/591 (50%), Positives = 394/591 (66%), Gaps = 5/591 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + + Y AD IQIL+GL+AV+KRP MYIG T + GLHH++YE++DN++DE+L GY Sbjct: 1 MEEEMAQQEYGADQIQILEGLEAVRKRPGMYIGSTSAQ-GLHHLVYEIVDNSVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N S TV D+GRGIPT ++ + GI A EV+ T LHAGGKF YKVSGGL Sbjct: 60 CHHIRVTINRGNSVTVVDDGRGIPTGINHKAGIPAVEVVFTILHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I+R+G I+ + G L V GS ++TGT+VTFLP Sbjct: 120 HGVGASVVNALSLWLEVEIRRDGKIWRQRYERGKTMGSLKVVGSCDPSETGTKVTFLPDD 179 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +F+Y L+ RLRE +FL ++ISL D+R E RE + +Y+GGI+ FVSYL+R Sbjct: 180 RIFETTEFDYGVLRRRLRETAFLTKGLRISLRDEREEEVREDSFYYEGGIKEFVSYLNRG 239 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KPL + I +G+ + + +++AM+ ND Y E F NNI +GGT ++G ++A+T Sbjct: 240 DKPLYRDVIYCEGTSNGVYVEVAMQHNDAYKEACYSFVNNIITPEGGTQVTGFKAAVTNV 299 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 SY ++ K ++ DD REG TSV+SIK+ DP+F QTK+KL +SE R V++ Sbjct: 300 FNSYAHENKLIKDTEKLDS-DDIREGLTSVISIKIEDPQFEGQTKQKLGNSEARGAVQAV 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE++P A++IV+K A R+AAR+ARDLTRRK LD A+LPGKLADCS Sbjct: 359 VTEQLTYFLEQNPQAARLIVEKSQLAQRAREAARKARDLTRRKSPLDGAALPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP + E+F+VEGDSAGGSAK+ R+R QAILPLRGKILNVE+AR D++ + EI +IT Sbjct: 419 KDPAECEIFIVEGDSAGGSAKEARNRRTQAILPLRGKILNVEKAREDRIYGNAEIKAMIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGI D FDI KLRYHKIIIMTDADVDGAHI TL+LTF +R MP LI G +Y+ P Sbjct: 479 AFGTGI-HDEFDIEKLRYHKIIIMTDADVDGAHIATLMLTFLYRFMPELIRQGNVYLATP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 PLY I + + Y +E + L I G + L Sbjct: 538 PLYKIEKNRKEWYAYSDEEQNNILNRIGRDNSIKIQRYKGLGEMDAQQLWE 588 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 3/186 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E +E + +++ + + ++ V + Sbjct: 456 ILNVEKAREDRIYGNAEIKAMITAFGTGIHDEFDIEKLRYHKIIIMTDADVDGAHIATLM 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739 F + + I + + + N + + + IGR I +QRY Sbjct: 516 LTFLYRFMPELIRQGNVYLATPPLYKIEKNRKEWYAYSDEEQNNILNRIGRDNSIKIQRY 575 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENSL 797 KGLGEM+A QLWETT++PDTR L RV++ D ++ + FS LMG+EVEPRREFI+EN+ Sbjct: 576 KGLGEMDAQQLWETTMDPDTRILKRVQVIDDDEAEINLTFSTLMGEEVEPRREFIEENAK 635 Query: 798 PSALDI 803 + LDI Sbjct: 636 YATLDI 641 >gi|304385859|ref|ZP_07368203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus acidilactici DSM 20284] gi|304328363|gb|EFL95585.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus acidilactici DSM 20284] Length = 648 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 290/598 (48%), Positives = 395/598 (66%), Gaps = 11/598 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADEKETKAELAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A+ I V + D S TVSDNGRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFANKIDVVVEKDNSITVSDNGRGIPVDIQKKTGKPALETVYTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173 VSGGLHGVG SVVNALS+ L R+ R+G IY + F G + P+ V G N GT V Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMRDGKIYYIDFEQGKVKTPMKVLGPTKNPDDHGTIV 179 Query: 174 TFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 F+P DIF F+ + L+ R+REL+FLN ++I+L D R P E Y+GGI + Sbjct: 180 HFVPDPDIFQETTVFDINILRTRIRELAFLNKGLRITLRDMRPENPTEDDFLYEGGIRHY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL++ K+ + PI ++G I++++AM++ +GY +L FTNNI +GGTH G Sbjct: 240 VEYLNKGKEVIFPEPIYVEGITKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALTR I Y + + K++ + GDD REG T+V+S+K PDP+F QTK KL +S+ Sbjct: 300 KRALTRVINDYAKNNGILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R+ V + S +L E+P A+ IV K A+ R AA+RAR++TR+K L++ +LPG Sbjct: 360 RTAVNEVFAETFSKFLLENPKVARQIVDKGTLAAKARIAAKRAREVTRKKSGLELNNLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLAD + +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A D++L+++ Sbjct: 420 KLADNTSKDPEISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +L TALGTG G+D FD+ K YHK+IIMTDADVDGAHIRTLLLT F+R M +I G Sbjct: 480 EIRSLFTALGTGFGED-FDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 ++YI +PPLY + +GK ++Y+ +E LE L S S + + G + L Sbjct: 539 YVYIAQPPLYQVRQGKMIKYIDSDEELEAVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 15/223 (6%) Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAE 647 I + ++ ++ + QA++ + N E V ++ + + Sbjct: 431 ISELFIVEGDSAGGSAKAGRSRLTQAILPIRGKILNVEKATLDRVLANEEIRSLFTALGT 490 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 + + + N L+ V + + I + + L Sbjct: 491 GFGEDFDVTKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAGYVY-IAQPPLYQ 549 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRS 761 + G IK L+ + +S +QRYKGLGEM+A QLWETT+NP+ R Sbjct: 550 VRQGKMIKYIDSDEELEAVLGQ----LSPSPKPVIQRYKGLGEMDAEQLWETTMNPENRR 605 Query: 762 LLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 LLRV D A+ F LMGD+VEPRR+FI++N++ LDI Sbjct: 606 LLRVSADDLDAANGDFEMLMGDKVEPRRKFIEDNAVFVENLDI 648 >gi|296392546|ref|YP_003657430.1| DNA gyrase subunit B [Segniliparus rotundus DSM 44985] gi|296179693|gb|ADG96599.1| DNA gyrase, B subunit [Segniliparus rotundus DSM 44985] Length = 673 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 269/609 (44%), Positives = 366/609 (60%), Gaps = 35/609 (5%) Query: 1 MSDNIQ--NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ SSY A SI IL+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ Sbjct: 1 MSEKKNADKSSYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + VTL DG V D+GRGIP H G EV++T LHAGGKF+ SY VSG Sbjct: 60 GYATRVDVTLLADGGVEVVDDGRGIPVAPHAS-GPPTVEVVLTVLHAGGKFDSDSYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVNALS L++ I +G + S+ PL G TGT V F Sbjct: 119 GLHGVGISVVNALSYKLEVEIDVDGFHWSQSYDKAKP-GPLTK-GDPVKRTGTTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR------------------- 219 +IF +++DT+ RL+E++FLN + I+L D R + Sbjct: 177 PEIFETTHYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDAAEDGEALDTAEVARSEQE 236 Query: 220 ---------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 Y GG+ +V +++R K + S + +G + +++AM+WN GY Sbjct: 237 AQAQAPAVKRREYHYPGGLHDYVGHINRTKTAVHNSIVSFEGKGEGHEVEIAMQWNSGYT 296 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V F N I +GGTH G R+ALT + Y K+ +++ GDD REG +V+ Sbjct: 297 ESVYTFANTINTHEGGTHEEGFRAALTSTMNKYARDKKILKEKDKNLTGDDVREGLAAVI 356 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++E+RS V+ N+ L+ W E +P EAK+IV K A + R+ Sbjct: 357 SVKLGEPQFEGQTKTKLGNTEIRSFVQKICNEELTHWFEANPSEAKLIVTKAQQAYLARE 416 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR AR+ RRK DI LPGKLADC +DP KSE+++VEGDSAGGSAK GR+ E QAI Sbjct: 417 AARSARETVRRKTATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEFQAI 476 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LP+RGKI+NVE+AR D++L + E+ ++ITA GTGI D FD+ KLRYHKI++M DADVDG Sbjct: 477 LPIRGKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVLMADADVDG 535 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M L+ +G +Y+ PPLY + ++ + D LI LS Sbjct: 536 QHISTLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDALIEAGLSA 595 Query: 571 EIELFCDSK 579 + D Sbjct: 596 GKRINKDDG 604 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 62/88 (70%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L++ S G++ I+ +QRYKGLGEMNA +LWETT++PDTR+L V + DA+ AD+L Sbjct: 587 ALIEAGLSAGKR-INKDDGVQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDDAAAADEL 645 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++V RR FI N+ LD+ Sbjct: 646 FSILMGEDVPARRGFIARNARDVRFLDV 673 >gi|293365094|ref|ZP_06611811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis ATCC 35037] gi|307702197|ref|ZP_07639157.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037] gi|322374607|ref|ZP_08049121.1| DNA gyrase, B subunit [Streptococcus sp. C300] gi|291316544|gb|EFE56980.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus oralis ATCC 35037] gi|307624210|gb|EFO03187.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037] gi|321280107|gb|EFX57146.1| DNA gyrase, B subunit [Streptococcus sp. C300] Length = 648 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|315654385|ref|ZP_07907293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] gi|315491420|gb|EFU81037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii ATCC 51333] Length = 686 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 260/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 YDA I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D Sbjct: 17 EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VTL DG V+DNGRGIP H E EV+MT LHAGGKF SY VSGGLHGV Sbjct: 76 IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G+SVVNALS+ + +KR+G + + F N G + PL G +TGT F P +IF Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221 +F+Y+TL+ R ++++FLN ++I++ D+R R + Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254 Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 + Y+ G+ +V +++ + ++ ++ + +++++A++W Y E++ Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G R+ALT + + K ++ GDDCREG T+V+S+K+ Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKVGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL ++E R+ V+ V L W + HP E K I+ K A R+AAR+A Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD E+FLVEGDSAGGSA GR +QAILPLRG Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI NG +++ PPLY + + +D +++ L + Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613 Query: 576 CDSK 579 + Sbjct: 614 KEGG 617 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A +LWETT++P R L +V + +A+ AD++FS LMG++V RR FIQ N Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 678 AQDVRFLDI 686 >gi|52080434|ref|YP_079225.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580] gi|52785813|ref|YP_091642.1| DNA topoisomerase IV subunit B [Bacillus licheniformis ATCC 14580] gi|52003645|gb|AAU23587.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580] gi|52348315|gb|AAU40949.1| ParE [Bacillus licheniformis ATCC 14580] Length = 655 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 270/658 (41%), Positives = 395/658 (60%), Gaps = 22/658 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ D Sbjct: 3 KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S +V D GRG+PT +H + G E+I+T LHAGGKF Q YK SGGLHGV Sbjct: 62 IIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I+R+GN+Y F N G L G+ TGT + F P +F Sbjct: 121 GASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTK-KTGTLIHFKPDPAMF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S FN++TL RLRE +FL ++I LID+R + + T Y+ GIEAFV+ +K Sbjct: 180 STTTFNFETLSERLRESAFLLKGLKIELIDER--DQTKETFLYENGIEAFVA-YLNEEKD 236 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + +G + I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 237 ALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V++ V Sbjct: 297 YARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 357 SEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI T+I Sbjct: 417 SRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+G G+G D FDI + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI +G ++I Sbjct: 477 HAIGGGVGAD-FDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 535 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 PPLY ++ + + ++Y +E ++D L I+ + G ++ + L Sbjct: 536 PPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 590 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + +A L+ + E Sbjct: 591 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 647 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 6/265 (2%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + ++ + S + ++ Sbjct: 368 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYL 427 Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ + QAV+ V N E + ++ ++ ++ I + Sbjct: 428 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 487 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N D ++ + F + I ++ + + K Sbjct: 488 DIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 547 Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 +I +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA Sbjct: 548 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 607 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++ + + LMGD+VEPRR++I++N Sbjct: 608 ARVERRVTTLMGDKVEPRRKWIEKN 632 >gi|319645607|ref|ZP_07999839.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2] gi|317392493|gb|EFV73288.1| DNA topoisomerase 4 subunit B [Bacillus sp. BT1B_CT2] Length = 657 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 270/658 (41%), Positives = 395/658 (60%), Gaps = 22/658 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ D Sbjct: 5 KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 63 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S +V D GRG+PT +H + G E+I+T LHAGGKF Q YK SGGLHGV Sbjct: 64 IIVKIHKDNSISVQDRGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 122 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I+R+GN+Y F N G L G+ TGT + F P +F Sbjct: 123 GASVVNALSEWLTVTIERDGNVYRQRFENGGKPVTSLDKIGTTK-KTGTLIHFKPDPAMF 181 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S FN++TL RLRE +FL ++I LID+R + + T Y+ GIEAFV+ +K Sbjct: 182 STTTFNFETLSERLRESAFLLKGLKIELIDER--DQTKETFLYENGIEAFVA-YLNEEKD 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + + +G + I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 239 ALSEVVSFEGEHNGIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 298 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V++ V Sbjct: 299 YARKVALLKEKDKNLEGTDIREGLSAIVSVRIPEELLQFEGQTKGKLGTSEARSAVDAIV 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 359 SEQLAYFLEENRETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQ 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI T+I Sbjct: 419 SRNPSKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+G G+G D FDI + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI +G ++I Sbjct: 479 HAIGGGVGAD-FDIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 537 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 PPLY ++ + + ++Y +E ++D L I+ + G ++ + L Sbjct: 538 PPLYKVSKGSGKKEIIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 592 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + +A L+ + E Sbjct: 593 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 649 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 6/265 (2%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + ++ + S + ++ Sbjct: 370 RETATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAQSRNPSKNELYL 429 Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ + QAV+ V N E + ++ ++ ++ I + Sbjct: 430 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADF 489 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 N D ++ + F + I ++ + + K Sbjct: 490 DIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 549 Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 +I +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA Sbjct: 550 KEIIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 609 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++ + + LMGD+VEPRR++I++N Sbjct: 610 ARVERRVTTLMGDKVEPRRKWIEKN 634 >gi|295101859|emb|CBK99404.1| DNA gyrase subunit B [Faecalibacterium prausnitzii L2-6] Length = 664 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 270/607 (44%), Positives = 380/607 (62%), Gaps = 23/607 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ + Y+A IQ+LKGL+AV+KRP MYIG T GE GLHH++YE++DNAIDE+L GY Sbjct: 11 AETATDHEYNASEIQVLKGLEAVRKRPGMYIGST-GERGLHHLVYEIVDNAIDEALAGYC 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 D I V + V+DNGRGIP D+ + G+ A V+ T LHAGGKF YKV+GG Sbjct: 70 DHIEVKILKGDIIQVTDNGRGIPVDIQADTGLPAVTVVYTILHAGGKFGGENSGYKVAGG 129 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPS 178 LHGVG SVVNA S WL + ++R+G YE +F G D PL G+ + TGT VTF P Sbjct: 130 LHGVGASVVNACSEWLTVNVRRDGREYEQTFRRGDPDGPLKCIGTVDPSVTGTRVTFKPD 189 Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------PEPREITMF 224 ++F +N++TL+ RLRE SFLN+ V+I+L D+R P R M Sbjct: 190 PEMFKDTTVYNFETLEKRLREESFLNAGVKITLTDERELYTPVLEDGKEGEPTYRTEVMC 249 Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 Y+GGI++FV+Y R + L + I ++G D ++A+++N Y+E +L F NN+ Sbjct: 250 YEGGIKSFVTYLGEKRDLEVLHPNVIYLKGQTDRGMAEIALQYNSSYNELLLSFANNVNT 309 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 DGGTH G RS+LTR Y K ++ G D REG V+S+K+ + F Q Sbjct: 310 PDGGTHEEGFRSSLTRVFNDYGRSHGLLKDKDENLSGADVREGLICVISVKLQEAEFEGQ 369 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E+R++V + V L + EE+P AK I +K A+ R AA++AR+L RRK Sbjct: 370 TKAKLGNTEIRTLVSNMVYSKLMEFFEENPGVAKAIFEKATQAARARAAAKKARELVRRK 429 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L+ + +PGKLADC E+DP ++E+F+VEGDSAGGSAK GR QAILPL GK+LNVE+ Sbjct: 430 SALETSRMPGKLADCREKDPTRTEIFIVEGDSAGGSAKMGRDSAIQAILPLWGKMLNVEK 489 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR D++ + ++ ++ ALG GIG D FDI+KLRY K+ IM DADVDG+HI TL+LTFFF Sbjct: 490 ARADRIYGNDKLMPVVLALGCGIG-DEFDISKLRYDKVFIMADADVDGSHICTLMLTFFF 548 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M LI G +Y+ +PPL+ + +G +++Y ++ + L++Q + G + Sbjct: 549 RYMRPLIEQGHVYVAQPPLFKVQKGSTIKYAYNDAEMA--LLSQEMPGAKINRYKGLGEM 606 Query: 583 SKNDLRN 589 + L Sbjct: 607 NPEQLWE 613 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 54/71 (76%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 G + RYKGLGEMN QLWETT+NPD R ++R+ I DA +AD+ F+ LMGD+VEPRR FI Sbjct: 594 GAKINRYKGLGEMNPEQLWETTMNPDNRVIVRITIEDAEKADEAFTILMGDQVEPRRRFI 653 Query: 793 QENSLPSALDI 803 + N+ + LD+ Sbjct: 654 ETNAQYAKLDV 664 >gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii] gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii] Length = 723 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 263/560 (46%), Positives = 358/560 (63%), Gaps = 11/560 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA IQ+L+GL+ V++RP MYIG T G GLHH+IYEVLDNAIDE G+A + V Sbjct: 84 TSYDAGKIQVLEGLEPVRRRPGMYIGST-GPRGLHHLIYEVLDNAIDEVQAGFATQVDVV 142 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGV 125 L+ DGS +++DNGRGIPTD+H G S E ++T LHAGGKF Y VSGGLHGVGV Sbjct: 143 LHSDGSVSITDNGRGIPTDVHPATGKSTLETVLTVLHAGGKFGGDESGYTVSGGLHGVGV 202 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLPSSDIF 182 SVVNALS L+ + R G Y F G L + + TGT V FLP ++F Sbjct: 203 SVVNALSKRLEATVWRNGQEYRQVFQRGKAVGSLTTRSLPRESSSRTGTCVKFLPDDEVF 262 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F+ + + RLRE++FLN V I+L ++ + + GG+ +V +L++ K Sbjct: 263 TTTTAFDPNIVSSRLREVAFLNPEVTINLKEESATTD--EVFHFGGGLVEYVEWLNQDKT 320 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + PI +D+IS++++M+W D Y + +L + N+I DGGTHL GL+ LTR + Sbjct: 321 KIH-DPISFSVEKDDISVNVSMQWCSDAYSDTLLGYANSIRTADGGTHLDGLKMGLTRTL 379 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +S ++ ++ G+ REG T V+S+K+P+P F QTK +L + EVR +VE V Sbjct: 380 NILGRRSKAIREKGDNLSGEHAREGLTCVISVKVPEPEFEGQTKTRLGNVEVRKIVEQAV 439 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++ +LE P + I+ K L A +AA++AR+L RRK VL ++LPGKLADC+ Sbjct: 440 IEQVTEYLEFRPDTLEAILSKALQAYKAAEAAKKARELVRRKNVLKTSTLPGKLADCTSS 499 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP+ SE+F+VEG+SAGGSAKQGR R QAILPL+GKILN+ER + +QEI LI A Sbjct: 500 DPRVSEIFIVEGESAGGSAKQGRDRAFQAILPLKGKILNIERKDDAAIYKNQEIQDLIVA 559 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG G + F + LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G++Y+ PP Sbjct: 560 LGLGTRGEEFHKDTLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPP 619 Query: 541 LYGITRGKSLQYVKDEESLE 560 LY + RGK Y E L+ Sbjct: 620 LYKVERGKHAHYCYSENELQ 639 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 6/158 (3%) Query: 651 KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN 710 + +H ++ V + F F + I + + Sbjct: 567 EEFHKDTLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDGGYIYVGVPPLYKVERG 626 Query: 711 GDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 L + ++QR+KGLGEM QLW+TTL+P R L ++ + Sbjct: 627 KHAHYCYSENE-LQGLLGTFAANAPYNIQRFKGLGEMMPLQLWDTTLDPSKRMLKKLTLE 685 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS---LPSALDI 803 DA +A FSRLMGD+VEPR+E I +++ LD+ Sbjct: 686 DAVEASFTFSRLMGDKVEPRKELILKSAAQFKQQNLDV 723 >gi|315657693|ref|ZP_07910575.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492165|gb|EFU81774.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 686 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 260/604 (43%), Positives = 364/604 (60%), Gaps = 31/604 (5%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 YDA I++L+GL+AV+ RP MYIG T GE GLHH++YEV+DN++DESL GY D Sbjct: 17 EKPEEHYDASDIRVLEGLEAVRVRPGMYIGST-GERGLHHLVYEVVDNSVDESLAGYCDH 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VTL DG V+DNGRGIP H E EV+MT LHAGGKF SY VSGGLHGV Sbjct: 76 IEVTLQADGGVRVADNGRGIPVAEHPSEHRPTVEVVMTILHAGGKFGGSSYAVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G+SVVNALS+ + +KR+G + + F N G + PL G +TGT F P +IF Sbjct: 136 GISVVNALSTKILTTVKRDGYEWHIEFGNGGKVIQPLRR-GEPTEETGTVQVFYPDPEIF 194 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS---------------------PEPREI 221 +F+Y+TL+ R ++++FLN ++I++ D+R R + Sbjct: 195 ETVEFDYETLRTRFQQMAFLNKGLRITITDERPNVTAEGDFVTGDQDGDADSPKVGRRSV 254 Query: 222 TMFYKGGIEAFVSYLDRH------KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 + Y+ G+ +V +++ + ++ ++ + +++++A++W Y E++ Sbjct: 255 SYCYENGLHDYVHFINDTKKSEVVHEEIIDFEASLEDVENAMALEIALQWTSAYSESIYT 314 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 + N I +GGTH G R+ALT + + K ++ GDDCREG T+V+S+K+ Sbjct: 315 YANTINTTEGGTHEEGFRAALTSLMNKIGREKGFIKDKDENLSGDDCREGLTAVISVKIR 374 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL ++E R+ V+ V L W + HP E K I+ K A R+AAR+A Sbjct: 375 NPQFEGQTKTKLGNTEARTFVQQTVYSQLGDWFDAHPAECKAIIAKAQSAQQARNAARKA 434 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 RD TRRK LD S+PGKL DCS RD E+FLVEGDSAGGSA GR +QAILPLRG Sbjct: 435 RDATRRKTALDSFSMPGKLRDCSSRDASDCEIFLVEGDSAGGSAVAGRDPAHQAILPLRG 494 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+AR D+ L ++EI +LITA GTGIG+D FD++KLRY+KI++M DADVDG HI T Sbjct: 495 KILNVEKARLDRALDNKEIQSLITAFGTGIGED-FDLSKLRYYKIVLMADADVDGQHITT 553 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLT FR M LI NG +++ PPLY + + +D +++ L + Sbjct: 554 LLLTLLFRYMRPLIENGHVFLATPPLYRLKWSNKPHQFVYSDKEKDKMVSLGLDSGARMP 613 Query: 576 CDSK 579 + Sbjct: 614 KEGG 617 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A +LWETT++P R L +V + +A+ AD++FS LMG++V RR FIQ N Sbjct: 618 IQRYKGLGEMSAQELWETTMDPSARLLKQVTMDEAASADEVFSLLMGEDVSSRRAFIQRN 677 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 678 AQDVRFLDI 686 >gi|307709096|ref|ZP_07645555.1| DNA gyrase, B subunit [Streptococcus mitis SK564] gi|307620042|gb|EFN99159.1| DNA gyrase, B subunit [Streptococcus mitis SK564] Length = 648 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N +YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQNYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|15829210|ref|NP_326570.1| DNA gyrase subunit B [Mycoplasma pulmonis UAB CTIP] gi|14090154|emb|CAC13912.1| DNA GYRASE SUBUNIT B [Mycoplasma pulmonis] Length = 644 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 265/597 (44%), Positives = 381/597 (63%), Gaps = 15/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N + Y+A +IQ+LKGL+ V+KRP MYIG T G+ GLHH+I+E++DN++DE++ G+ Sbjct: 3 MSKN---NQYNASNIQVLKGLEPVRKRPGMYIG-TTGKKGLHHLIWEIVDNSVDETMAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A IT+TL+ D T+ D+GRGIP D H E GIS E ++T LHAGGKF+ +SYKVSGGL Sbjct: 59 ASQITITLDNDNLITIEDDGRGIPVDRHPETGISTVETVLTVLHAGGKFDSESYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVG SVVNALS+ LK IKR ++ + F + G + PL V + TGT+++F P Sbjct: 119 HGVGASVVNALSTNLKAWIKRHNKLHYVEFHDGGKILKPLEVISELESDQTGTKISFQPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I DF+ + ++ R ++L++LN + I+++D R +++GGI ++ L++ Sbjct: 179 FSIMEKNDFDLEVVKDRAKQLAYLNKQLVINVVDNRVG--YTKQFYFEGGIVDYIKELNK 236 Query: 239 HKKPLMQSPIRIQG-----SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 KK L I +G + +++A+++ D Y N++ + NNI +GGTH G Sbjct: 237 SKKVLHDQTIYSEGANVLEDNPEVIVEVAIQYTDSYQSNIVSYANNILTIEGGTHEQGFF 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 L R + + K ++ +I DD +EG ++++SIK DP F QTK KL + + R Sbjct: 297 DGLVRILNKFATNLGLVKLEEEKLIRDDVKEGISAIISIKHVDPIFEGQTKGKLGNKDAR 356 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V + +L E+P+EAK I+ KV++A R A AR+ RRK DI+SLPGK Sbjct: 357 IAVNKIFSKNFERFLNENPVEAKNIILKVINARKARMAGLLAREAVRRKSAFDISSLPGK 416 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS ++ + SEL++VEG+SAGGSAK GR RE QAILPLRGK++N E+ +K+ +++E Sbjct: 417 LADCSSKNAEISELYIVEGNSAGGSAKMGRDREFQAILPLRGKVINAEKNNIEKVFNNEE 476 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +LI ALGTGI + F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R LI GF Sbjct: 477 IQSLIIALGTGI-AEEFNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGF 535 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ-SLSEEIELFCDSKGVISKNDLRN 589 +YI +PPLY I+ +Y ++E E+ L N +S+ G + + L + Sbjct: 536 VYIAQPPLYKISISGKSRYAYNDEQKEEILANIKDVSKVAIQRYKGLGEMDPDQLWD 592 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 17/203 (8%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 E+ I VFN E Q + ++L + +A N + K + Sbjct: 454 LPLRGKVINAEKNNIEKVFNNEEIQSLIIALGTGIAEEFNINKLRYHK-----------I 502 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PC 720 + V + F + I + + + +G Sbjct: 503 IIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFVYIAQPPLYKISISGKSRYAYNDEQKE 562 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 +L I + + +++QRYKGLGEM+ QLW+TT++P R++L+V+I DA++AD F+ L Sbjct: 563 EILANIKDVSK--VAIQRYKGLGEMDPDQLWDTTMDPGIRTMLQVQIEDAAKADWTFTTL 620 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MG EV PRREFI++N+ +D Sbjct: 621 MGGEVAPRREFIEQNAKYVKNID 643 >gi|228992295|ref|ZP_04152226.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442] gi|228767320|gb|EEM15952.1| DNA topoisomerase 4 subunit B [Bacillus pseudomycoides DSM 12442] Length = 654 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 264/663 (39%), Positives = 397/663 (59%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ + S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKNNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G IYE F N G+ L G +GT + F P Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGYIYEQRFENGGVPATTLEKIGKTK-QSGTTMHFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++I++ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKITIRDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAIVSVRVPEDLLQFEGQTKGKLGTSEGRSSVD 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FTVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFTVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|213646831|ref|ZP_03376884.1| DNA gyrase subunit B [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 469 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 287/471 (60%), Positives = 369/471 (78%), Gaps = 4/471 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++SYD+ SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ I V Sbjct: 2 SNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIVV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V+D+GRGIPT +H EEG+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVS Sbjct: 62 TIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS L+L I+R+G I+ + +G+ PL VTG + TGT V F PS + F+ Sbjct: 122 VVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT-DKTGTMVRFWPSHETFTNVT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ L RLRELSFLNS V I L DKR + Y+GGI+AFV YL+++K P+ Sbjct: 181 EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKE--DHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +D I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL+G R+A+TR + +Y++ Sbjct: 239 NIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMD 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVSSEV+S VE +N+ LS Sbjct: 299 KEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLS 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+A LPGKLADC ERDP S Sbjct: 359 EYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALS 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 EL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKMLSSQE+ T Sbjct: 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469 >gi|283797751|ref|ZP_06346904.1| DNA gyrase, B subunit [Clostridium sp. M62/1] gi|291074426|gb|EFE11790.1| DNA gyrase, B subunit [Clostridium sp. M62/1] Length = 639 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 257/622 (41%), Positives = 375/622 (60%), Gaps = 14/622 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + YDADSI +L+GL+AV+KRP MYIG G GL+H+IYE++DN++DE L G I Sbjct: 1 MGKAQYDADSITVLEGLEAVRKRPGMYIGGV-GTKGLNHLIYEIVDNSVDEHLAGECTSI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DGSCTV DNGRGIP ++HK+ G+SA V+++ LHAGGKF+ +YK SGGLHGVG Sbjct: 60 WVTLEADGSCTVRDNGRGIPVEMHKK-GVSAERVVLSTLHAGGKFDNSAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSS 179 SVVNALS L ++I + G I+ ++ GI L V G+ +TGT + FLP Sbjct: 119 SSVVNALSEHLDIKIYKNGQIHHDAYERGIPVVELVDGLLPVIGNTK-ETGTCINFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF F + L+ RL E ++LN ++ I ++R+ E +I GI A+V ++ Sbjct: 178 TIFEKTKFKAEWLKSRLHETAYLNPALTIYYENRRAGEEEKIVYSEPDGIIAYVKEINAG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ PI +GS + I ++ A+++ D + EN+L F NNI ++GGTHL+G ++ T Sbjct: 238 KTPVH-EPIYFKGSMEGIEVEAAIQFVDTFEENILGFCNNIFTQEGGTHLAGFKTKFTML 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I SY + K+ + G D R G T+V++IK PDP F QTK KL S++ V + Sbjct: 297 INSYARELGILKEKDSNFTGADTRNGMTAVIAIKHPDPIFEGQTKTKLASADATKAVFTL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L + + + K ++ ++ +R A +A+ K S GKL++C Sbjct: 357 TGEELQRFFDRNLETLKAVIGCAEKSAKIRKAEEKAKTNMLTKSRFSFDS-NGKLSNCES 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RD +K E+F+VEGDSAGGSAK GR+R+ QAILP+RGKILNVE+A DK+L++ EI T+I Sbjct: 416 RDAEKCEIFIVEGDSAGGSAKMGRNRQYQAILPIRGKILNVEKASMDKVLANAEIKTMIN 475 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G + + FDI+KLRY+KII+MTDADVDG+HI TLLLTF +R MP LI G +YI Sbjct: 476 AFGCGFSEGYGNDFDISKLRYNKIILMTDADVDGSHIDTLLLTFLYRFMPDLITEGHVYI 535 Query: 537 IKPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPL+ I + QY+ DE++LE Y + ++ + + ++ ++ Sbjct: 536 AMPPLFKVIPKKGEEQYLYDEKALEKYKKTHAGGFTLQRYKGLGEMDAEQLWETTLNPEN 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 596 RVLKQVEIEDARMASEITEMLM 617 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V +++ +N + + + S + +I + ++GS Sbjct: 453 ILNVEKASMDKVLANAEIKTMINAFGCGFSEGYGNDFDISKLRYNKII--LMTDADVDGS 510 Query: 681 SIFSFGSKYK-RIFSNRIEENYLTIL------SLICNGDKIKITGPCSLLDTIFSIGRK- 732 I + + R + I E ++ I + G++ + + +K Sbjct: 511 HIDTLLLTFLYRFMPDLITEGHVYIAMPPLFKVIPKKGEEQYLYD-----EKALEKYKKT 565 Query: 733 ---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 G ++QRYKGLGEM+A QLWETTLNP+ R L +V+I DA A ++ LMG +V PRR Sbjct: 566 HAGGFTLQRYKGLGEMDAEQLWETTLNPENRVLKQVEIEDARMASEITEMLMGSDVPPRR 625 Query: 790 EFIQENSLPSALD 802 +FI +++ + +D Sbjct: 626 QFIYDHAEEAEID 638 >gi|269314031|gb|ACZ36917.1| DNA gyrase B [Mycobacterium massiliense] Length = 651 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 266/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + VT+ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V D+GRGIP +H GI +V+MT+LHAGGKF+ SY VSGGLHGVG+SVVN Sbjct: 60 ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS+ L++ I R+G ++ + L G+A TGT V F +IF +++ Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWADPEIFETTTYDF 176 Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219 +T+ RL+E +FLN + I L D+R + + Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKVK 236 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 Y G+ FV +++R K + + + G + +++AM+WN GY E+V F N Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y ++ K+ ++ GDD REG +V+S+K+ +P+F Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EV+S V+ N+ L W + +P +AK +V K + ++ R AAR+AR+L Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILPLRGKI+N Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M L+ +G +++ +PPLY + +S + D L+ L ++ D Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 I + +D + + + ++ A + Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637 Query: 778 SRLMGDEVEPRREF 791 S LMG++VE RR F Sbjct: 638 SILMGEDVEARRSF 651 >gi|167758061|ref|ZP_02430188.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704] gi|167663958|gb|EDS08088.1| hypothetical protein CLOSCI_00399 [Clostridium scindens ATCC 35704] Length = 666 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 253/621 (40%), Positives = 355/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDADSI IL+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 29 KKNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEMVDNAVDEHLAGYCSEIR 87 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS T+SDNGRG+P DLH G+SA V+ T LHAGGKF+ +YK SGGLHGVG Sbjct: 88 VTLEKDGSATISDNGRGVPVDLHA-TGVSAERVVYTTLHAGGKFDDSAYKTSGGLHGVGS 146 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ + + R+G I+ + G L G TGT+V FLP Sbjct: 147 SVVNALSTYMDVEVSRDGYIHHDRYERGKPVIELEDGLLPTIGKT-RKTGTKVNFLPDDT 205 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + ++ R+ E ++LN + I D+R E I GI F+ L+ K Sbjct: 206 IFEKTRFRAEEVKSRMHETAYLNPDLTIIFEDRRGSETEHIVYHEPEGILGFIEDLNSKK 265 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G D I +++A ++ + +HENVL F NNI +GGTHL+G ++ T I Sbjct: 266 EAVH-EPVYFKGESDGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVI 324 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 325 NQYSRELGILKEKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKACSKVT 384 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND + + + + K ++ A+ +R RA+ K GKLA+C + Sbjct: 385 NDEIIRYFDRNLDNLKKVISCAEKAAKIRKTEERAKTNLLTKQK-YSFDSNGKLANCESK 443 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 444 DAGKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 503 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 504 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 563 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y ++ + + ++ ++ + Sbjct: 564 MPPLYKAMPKKGEEEYLYDDKALERYRKTHDGPFTLQRYKGLGEMDAQQLWETTLNPETR 623 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + KL++ E + Sbjct: 624 MLKLVEIEDARMASGVTEMLM 644 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 50/69 (72%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR L V+I DA A + LMG EV PRR FI E Sbjct: 598 TLQRYKGLGEMDAQQLWETTLNPETRMLKLVEIEDARMASGVTEMLMGSEVPPRRTFIYE 657 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 658 NATEAELDI 666 >gi|1107468|gb|AAA83016.1| gyrase B [Mycobacterium tuberculosis H37Rv] Length = 686 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 268/650 (41%), Positives = 377/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 16 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 75 TVNVVLLEDGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 134 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 192 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 251 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++A+ WN GY E+ Sbjct: 252 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAIEWNAGYSES 311 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 312 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 371 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 372 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 431 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 432 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 491 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 492 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 550 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 551 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 610 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 611 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 658 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 601 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 660 SILMGEDVDARRSFITRNAKDVRFLDV 686 >gi|331266709|ref|YP_004326339.1| DNA gyrase, B subunit [Streptococcus oralis Uo5] gi|326683381|emb|CBZ00999.1| DNA gyrase, B subunit [Streptococcus oralis Uo5] Length = 648 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F+++ L R++EL+FLN ++IS+ D+R + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708] gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708] Length = 645 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 394/591 (66%), Gaps = 9/591 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L G+ + V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSVDEALAGHCTHVEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIP D+H + G SA E ++T LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINADGSVTVTDDGRGIPVDIHPKTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS ++++ + R+ + + L V TGT +TF P + IF+ Sbjct: 121 VVNALSEFVEVTVWRDNKEHLQRYERSFPVTELQVKPYKEPRTGTSITFKPDTQIFTISI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+I D R S PR YKGGI+ +V+Y++R K Sbjct: 181 EFDYITLSGRLRELAYLNAGVKIIFTDHRLELLKSDTPRIEIYEYKGGIKEYVAYMNREK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I +QG R+N+ ++++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEIIYVQGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+SF Sbjct: 301 LNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSF 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPSIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + E+ +LIT Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG G+ + FD +LRYH+I+IMTDADVDGAHIRTLLLTFF+R +LI GF+YI P Sbjct: 481 ALGLGVKGEEFDSAQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PLY + RGK+ +Y E L+ ++ G + L Sbjct: 541 PLYKVERGKNHEYCYSERELQQHIATLPTKANYNIQRFKGLGEMMPEQLWT 591 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 K E+ + I++ V + F + K I I + + Sbjct: 487 KGEEFDSAQLRYHRIVI-MTDADVDGAHIRTLLLTFFYRYKRALIEQGFIYIACPPLYKV 545 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + L I ++ + ++QR+KGLGEM QLW TT+NP+TR + +V+ Sbjct: 546 ERGKNHEYCYSERELQQHIATLPTKANYNIQRFKGLGEMMPEQLWTTTMNPETRKMKQVE 605 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 I DA++AD +F+ LMGD V PRREFI+ LDI Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645 >gi|319946623|ref|ZP_08020857.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus australis ATCC 700641] gi|319746671|gb|EFV98930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus australis ATCC 700641] Length = 649 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 283/657 (43%), Positives = 414/657 (63%), Gaps = 17/657 (2%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ ++ YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEELKQETTGQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F Sbjct: 120 SGGLHGVGSSVVNALSTQLDVHVHKNGQIHYQEYKRGQVVADLEVIGET-DRTGTTVHFT 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ F++D L R++EL+FLN ++IS+ DKR + + Y+GGI ++V Y Sbjct: 179 PDPEIFTETTVFDFDKLNKRIQELAFLNRGLRISITDKREGQEQTKDYHYEGGIASYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGELDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYARKNKLLKDNEENLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + + E SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAEALERYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + + ++ A + ++ R FI E +E S Sbjct: 596 LWETTMNPEHRLMARVTVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G + L+ +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAEALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN+ S LD+ Sbjct: 605 HRLMARVTVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649 >gi|304373045|ref|YP_003856254.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1] gi|304309236|gb|ADM21716.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1] gi|330723339|gb|AEC45709.1| DNA gyrase subunit B [Mycoplasma hyorhinis MCLD] Length = 640 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 266/642 (41%), Positives = 393/642 (61%), Gaps = 12/642 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N +Y+A+SIQ L+GL+ V+KRP MYIG T G LHH+I+E++DNA+DE+L G+A+ I Sbjct: 1 MSNQNYEAESIQTLEGLEPVRKRPGMYIGGT-GILPLHHLIWEIVDNAVDEALAGFANTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV + DG VSDNGRGIP +H + +SAAEV++T LHAGGKF+ SYKVSGGLHGVG Sbjct: 60 TVEITTDGYVKVSDNGRGIPVGIHPKHNVSAAEVVLTVLHAGGKFDGSSYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGND-TGTEVTFLPSSDIF 182 SVVNALS+ LK+ IKR+G +Y F++ G + L V + + TGT + F P I Sbjct: 120 ASVVNALSANLKVWIKRDGKLYFQEFVDGGKKIDDLKVIDTVPDFSTGTTIMFKPDFTIM 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 V DF D + RL++ ++L +++ I K E + GGI +VS L + + Sbjct: 180 EVNDFRLDIILDRLKQTAYLTKNLK--FIVKDQRNNFEKEFLFAGGIIDYVSELTKGSEK 237 Query: 243 LMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I +G + + ++A+++ VL +TNNI ++GGTH +GL AL+R Sbjct: 238 VHDNIIYSEGEISTDQYHTKAEIALQYVKEDRSEVLAYTNNIYNREGGTHETGLFDALSR 297 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y ++ K D+ +D ++G V+SIK +P F QTK KL + EVRSVV Sbjct: 298 ILNNYALENKFFKSDQEKFSREDIKDGMYVVVSIKHSNPIFEGQTKGKLNNKEVRSVVNK 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P +A+ I+++ L + R AA AR+ +RK +I SLPGKLADC+ Sbjct: 358 IFSEVFERFLAENPDQARKIIERNLLSQKARKAAESAREAIKRKSPFEINSLPGKLADCT 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D + SEL++VEG+SAGGSAK GR R QAILPLRGK++N ++ F+K+L ++EI +LI Sbjct: 418 TKDAQISELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQKTNFEKVLKNEEILSLI 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + F+INK+RY+KIIIMTDAD DG+HIRTLLLTF +R LI GF+YI + Sbjct: 478 TAFGTGIGAE-FNINKIRYYKIIIMTDADSDGSHIRTLLLTFLYRFFKPLIEYGFVYIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN-FIDDALK 596 PPLY I+ K + Y ++ E + + ++++ G ++ + L +D + Sbjct: 537 PPLYKISANKKVVYAYSDKQKEQIIEQEFSNQKVSIQRYKGLGEMNPDQLWETTMDPKTR 596 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 ++ E+ + + V + E N A L Sbjct: 597 KMIQVQIQDAIIASQVFEELMGTDVAPRKLFIEENAKYAKNL 638 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 1/76 (1%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 + +S+QRYKGLGEMN QLWETT++P TR +++V+I DA A +F LMG +V P Sbjct: 564 EFSNQKVSIQRYKGLGEMNPDQLWETTMDPKTRKMIQVQIQDAIIASQVFEELMGTDVAP 623 Query: 788 RREFIQENSLPS-ALD 802 R+ FI+EN+ + LD Sbjct: 624 RKLFIEENAKYAKNLD 639 >gi|300780154|ref|ZP_07090010.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium genitalium ATCC 33030] gi|300534264|gb|EFK55323.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium genitalium ATCC 33030] Length = 686 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 281/691 (40%), Positives = 393/691 (56%), Gaps = 53/691 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N YDA SI IL+GL+AV+KRP MYIG T G GLHH+++EV+DN++DE++ GY Sbjct: 1 MAEQQPN--YDASSITILEGLEAVRKRPGMYIGST-GSRGLHHLVWEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + VTL DG V DNGRGIP ++H G +V+MT+LHAGGKF+ +SY VSGGL Sbjct: 58 ADKVEVTLLADGGVQVVDNGRGIPVEMHPS-GAPTVQVVMTQLHAGGKFDSESYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I L V G TGT + F P ++ Sbjct: 117 HGVGISVVNALSTRVEADIKRDGKHWYQNFTNAIP-EEL-VEGDNARGTGTSIRFWPDAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-------------------- 220 IF +F+YD + RL+E++FLN + I+L D+R + Sbjct: 175 IFETVEFDYDIIARRLQEMAFLNKGLTITLKDERVSDEELELEAIAEEGDTAQVVEGDSF 234 Query: 221 -------------------------ITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255 +T Y G+ +V+YL+R K + + + + Sbjct: 235 ADEDVVDKQEDGDVAPTSKKKREKKVTYHYPNGLVDYVNYLNRTKTAIHPTIVGFEAKGT 294 Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315 + +++AM+WN G+ E+V F N I +GGTH G R+ALT + Y + K Sbjct: 295 DHELEIAMQWNGGFKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAREHKLIKDKDP 354 Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375 ++ GDDCREG +V+S+++ DP+F QTK KL +SE++ V+ VN+ L+ W + +P EA Sbjct: 355 NLTGDDCREGLAAVISVRVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHLNDWFDANPAEA 414 Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 K+I+KK + +S R+AAR+AR+ RRK D+ LPGKLADC +DP SELF+VEGDSA Sbjct: 415 KVIIKKAVSSSQAREAARKARESVRRKSATDLGGLPGKLADCRSKDPVASELFIVEGDSA 474 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAKQGR QAILPLRGKILNVE+AR D++LS+ E+ +ITALGTGI D FDI+KL Sbjct: 475 GGSAKQGRDSMYQAILPLRGKILNVEKARLDRVLSNNEVQAIITALGTGI-NDEFDISKL 533 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVK 554 RYHKI++M DADVDG HI TLLLT +R MP LI +G +++ PPLY + K Y Sbjct: 534 RYHKIVLMADADVDGQHIATLLLTLLYRLMPELIGDGHVFLANPPLYKLKWHKGEPGYAY 593 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614 + + L D N + + + Sbjct: 594 SDAERDAELEEGLNEGRKINTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELEDAQ 653 Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFI 645 +A D S ++ A + F+ Sbjct: 654 RADELFSILMGDDVAARRSFITRKAKDVRFL 684 Score = 143 bits (361), Expect = 9e-32, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMN +LWETTL+P+ R L RV++ DA +AD+LFS Sbjct: 602 LEEGLNEGRK-INTDDGIQRYKGLGEMNPGELWETTLDPENRILRRVELEDAQRADELFS 660 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI + LD+ Sbjct: 661 ILMGDDVAARRSFITRKAKDVRFLDV 686 >gi|85057535|ref|YP_456451.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma AYWB] gi|84789640|gb|ABC65372.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma AYWB] Length = 671 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 271/673 (40%), Positives = 389/673 (57%), Gaps = 43/673 (6%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+ADSIQIL+GL+AV+KRP MYIG T + GLHH+++E++DN+IDE+L G+A+ IT+ Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGST-AQKGLHHLVWEIVDNSIDEALAGHANNITLE 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + +VSDNGRGIP D+H + G A E I+T LHAGGKF+ SYKVSGGLHGVG SV Sbjct: 61 ILPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186 VNALS+W + I+ IY + GI +PL V G N GT + FL +IF Sbjct: 121 VNALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGT-NKRGTTIQFLSDPEIFQETTI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP-LMQ 245 +N+DTL+ R+++LSFLN +++ + DKR + ++ G++ ++ +++ K Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFH 239 Query: 246 SPIRIQGSRDNISIDLAMRWND--------------------------GYHENVLCFTNN 279 ++ ++ ++ + + + F NN Sbjct: 240 EIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNN 299 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 IP +GGTH G + ALTR I+ Y K F K ++ +D EG T+++S+K DP+F Sbjct: 300 IPTHEGGTHEEGFKLALTRVISKYA-KEFNLLKKDEHLLSEDILEGITAIISLKHQDPQF 358 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EVR + + L +L EHP +++ I+ K L ++ R AA+RAR++ Sbjct: 359 EGQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVV 418 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 R K LD KLADC +DP SEL++VEGDSAGGSAKQGR QAILPLRGK+LN Sbjct: 419 RNK-PLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLN 477 Query: 460 VERARFDKMLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 VE++ K+L+++EI +LI A+G GI F+++K+RYHKIIIMTDADVDGAHIRTL Sbjct: 478 VEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTL 537 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELF 575 LLTFFFR LI G++Y +PPLY +GK +Y DE++ + + SL + Sbjct: 538 LLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDG-FQR 596 Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 G ++ N L +D + K + E+DQ N+ + Sbjct: 597 YKGLGEMNPNQLWET-----TMDPENRTLLKASLKDALNALSDEEAL-METDQTFNMLMG 650 Query: 636 SKLANRLNFIAEK 648 K+ R NFI EK Sbjct: 651 EKVLPRKNFILEK 663 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 10/77 (12%) Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEVE 786 QRYKGLGEMN +QLWETT++P+ R+LL+ + DA + D F+ LMG++V Sbjct: 595 QRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEKVL 654 Query: 787 PRREFIQENSLPSALDI 803 PR+ FI E +L + LD+ Sbjct: 655 PRKNFILEKALEADLDV 671 >gi|315612864|ref|ZP_07887775.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis ATCC 49296] gi|315314974|gb|EFU63015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sanguinis ATCC 49296] Length = 648 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F+++ L R++EL+FLN ++IS+ D+R + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFEKLNKRIQELAFLNRGLRISITDRREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G + + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEFKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 65/105 (61%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEFKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|166030882|ref|ZP_02233711.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC 27755] gi|166029149|gb|EDR47906.1| hypothetical protein DORFOR_00562 [Dorea formicigenerans ATCC 27755] Length = 640 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 251/626 (40%), Positives = 359/626 (57%), Gaps = 17/626 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N ++YDADSI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G+ Sbjct: 1 MAKN---NTYDADSITVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL DGS T+SDNGRG+P +H + G+SA ++ T LHAGGKF+ +YK SGGL Sbjct: 57 CTEIHVTLEKDGSATISDNGRGVPVGMHAK-GVSAERIVYTTLHAGGKFDDSAYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175 HGVG SVVNALS+++ +++ R+G I+ + GI L G TGT+V F Sbjct: 116 HGVGSSVVNALSAYMDVQVSRDGYIHHDRYERGIPVVELEDGLLPTLGKT-RKTGTKVNF 174 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 LP IF F + ++ R+ E ++LN ++ I D R EP I GI F+ Sbjct: 175 LPDDTIFEKTKFKAEEVKSRMHETTYLNPNLTIIFEDLRDTEPEHIVYHEPDGILGFIRE 234 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ K+ + P+ +G D I +++A ++ + +HEN+L F NNI +GGTHL+G ++ Sbjct: 235 LNAKKESVH-EPVYFKGEADGIEVEVAFQYVNEFHENILGFCNNIYNSEGGTHLTGFKTT 293 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 T I Y + K + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 294 FTTVINQYARELGILKDKDPNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNPDASKA 353 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V + + + + + K ++ A+ +R +A+ K S GKLA Sbjct: 354 TGKVVGEEIVRFFDRNLETLKNVIGCAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLA 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +C RD K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI Sbjct: 413 NCESRDASKCEIFIVEGDSAGGSAKTARDRMYQAILPIRGKILNVEKASIDKVLANAEIK 472 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 T+I A G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G Sbjct: 473 TMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIQEG 532 Query: 533 FLYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 +YI PPLY + +Y+ D+++LE Y ++ + + + + Sbjct: 533 HVYIAMPPLYKAMPKKGEEEYLYDDKALEKYRKTHDGPFTLQRYKGLGEMDADQLWETTL 592 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617 + ++ KL++ + E + Sbjct: 593 NPKTRLLKLVEIEDGRMASSVTEMLM 618 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 48/69 (69%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP TR L V+I D A + LMG EV PRR FI E Sbjct: 572 TLQRYKGLGEMDADQLWETTLNPKTRLLKLVEIEDGRMASSVTEMLMGTEVPPRRAFIYE 631 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 632 NATEAELDI 640 >gi|332654825|ref|ZP_08420567.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16] gi|332516168|gb|EGJ45776.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16] Length = 650 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 285/653 (43%), Positives = 405/653 (62%), Gaps = 14/653 (2%) Query: 1 MSDNIQ---------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDN 51 M++N + Y IQ+L+GL+AV+KRP MYIG T ESGLHH++YE++DN Sbjct: 1 MAENNELQQLNSTQVEHEYGGSEIQVLEGLEAVRKRPGMYIGSTS-ESGLHHLVYEIVDN 59 Query: 52 AIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ 111 +IDE+L GY ITVT+N + TV+DNGRGIP D+ + G A EV+ T LHAGGKF Sbjct: 60 SIDEALAGYCTDITVTINPGNTITVTDNGRGIPVDIQPQTGRPALEVVFTVLHAGGKFGG 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 YKVSGGLHGVG SVVNALS WL++++ + G IYEM F G + + V G + TGT Sbjct: 120 GGYKVSGGLHGVGASVVNALSEWLEVQVHKNGEIYEMKFSRGKITQEMKVVGKTDH-TGT 178 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 VTF P ++F ++NY+TL R+RE +FLN+ ++I +D R + +E M Y+GGI Sbjct: 179 TVTFKPDPEMFDTLEYNYETLHTRMREEAFLNAGLRIQTVDLRPGQEKEDDMCYEGGIRE 238 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FV++++R+K P+ I + G+R++ ++AM++NDGY E ++ F NN+ +GG H G Sbjct: 239 FVTFINRNKTPIHDGVIYMSGAREDSMAEIAMQYNDGYQEVMVSFANNVHTPEGGMHEEG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R ALT + +Y K K + V GDDCREG T V+S+K+ + +F QTK KL ++E Sbjct: 299 FRRALTNTLNAYGRKIGVLK-NDDKVSGDDCREGLTCVISVKLTEAQFEGQTKAKLGNAE 357 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++V S V++ L +LEE+P K+I++K + A+ R+AAR+AR+ RRK L A++P Sbjct: 358 IRTLVNSVVSEKLEIFLEENPKVGKLILEKAMMANRAREAARKARESIRRKTALGGAAMP 417 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 KL DC+E +P+ +EL++VEGDSAGGSA QGR QAILPL GK+LNVE+AR DK+ + Sbjct: 418 DKLRDCNEANPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGN 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 ++ +ITALG GIG D FD+NKLRYHK+IIM DADVDGAHIRTLLLTFFFR M LI N Sbjct: 478 DKLTPVITALGAGIG-DDFDLNKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIDN 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G++Y PPLY +T+GK+ + +E + ++ + + Sbjct: 537 GYVYAAVPPLYKLTKGKTTRVAFSDEERDKISAELRGDNPNAKVIINRYKGLGEMDPHEL 596 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + I + E + + +N Sbjct: 597 -WETTMDPEKRTLKRIELDDAVRADEIFTLLMGEKVEPRREYIQENAKKAVNL 648 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 37/68 (54%), Positives = 55/68 (80%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 + RYKGLGEM+ +LWETT++P+ R+L R+++ DA +AD++F+ LMG++VEPRRE+IQEN Sbjct: 582 INRYKGLGEMDPHELWETTMDPEKRTLKRIELDDAVRADEIFTLLMGEKVEPRREYIQEN 641 Query: 796 SLP-SALD 802 + LD Sbjct: 642 AKKAVNLD 649 >gi|291280736|ref|YP_003497570.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1] gi|290755438|dbj|BAI81814.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans SSM1] Length = 643 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 250/639 (39%), Positives = 373/639 (58%), Gaps = 10/639 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y I +LKGL+ V+KRP MYIG TD GLHH+++EV+DN+IDE+ GY I Sbjct: 1 MSQKTYTEKDIIVLKGLEPVRKRPGMYIGSTDN-KGLHHLLWEVVDNSIDEATAGYCSEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +TL+ D S TV DNGRGIP H E IS EV++T LHAGGKF K YK SGGLHGVG Sbjct: 60 EITLHKDYSVTVKDNGRGIPVGPHPELKISTLEVVLTTLHAGGKFENKIYKASGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSDIF 182 +SVVNALS +L++ +KR GN+Y ++ G L TG NDTGT + FLP IF Sbjct: 120 ISVVNALSEYLEVYVKRNGNLYYQTYSKGQKQQELQILKTGLNPNDTGTTIHFLPDKTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F ++ RL+ELS+LN ++I I++ +P+ I + G+E S ++ Sbjct: 180 KTTKFQPTIIEQRLQELSYLNKGLKIIFINELEEKPKTIVFLSEKGLEEMFSVKTKNFTY 239 Query: 243 LMQSPIRIQG---SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 L +PI I+ D + + Y + + + NNIP + GTH+ G ++AL++ Sbjct: 240 LF-NPIYIEDKNKEHDLQITCIFGFLQNYYDQTIYSYVNNIPTHEHGTHVDGFKNALSKI 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 Y K+ K + +D REG S++S+K+ +P F QTK KL + EV+ +V + Sbjct: 299 FNKY--KNTLKLNGKYKITSEDIREGLYSIISVKVINPEFEGQTKNKLGNKEVKEIVSNI 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + + L + + + K+ +K L+ R+AAR+A++ RRK V + ++LPGKLADCS Sbjct: 357 IVEHLEKYFDINQQAFKLWYQKTLNTVQAREAARKAKETVRRKNVFETSTLPGKLADCSS 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+ELF+VEGDSAGGSAKQ R++E QA+LPL+GKI+NVE+A K+L ++E+ LIT Sbjct: 417 KNVEKTELFIVEGDSAGGSAKQSRNKEFQAVLPLKGKIINVEKAYLVKLLENEEVKNLIT 476 Query: 480 ALGTGI-GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+G + + F ++ LRY KIIIMTDADVDGAHI TLLLTFF++ +P +I G L+I + Sbjct: 477 AIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITTLLLTFFYKYLPEIITQGKLFIAQ 536 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPLY I Y+KD+ LE + ++ + + ++ ++ Sbjct: 537 PPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQENVQIQRFKGLGEMNPEQLWETTMN 596 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 ++ F I + ++ +E + + Sbjct: 597 PNTRNLIQVEISDFEAANNIFSILMGKNIKERKEFIENY 635 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 7/189 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN--SDILVKRIARGVQEQFVLE 678 + N E + + ++ N + I +K ++N ++ V + Sbjct: 454 IINVEKAYLVKLLENEEVKNLITAIGVNVDKKGKFYVDNLRYGKIIIMTDADVDGAHITT 513 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-----LDTIFSIGRKG 733 F + + I ++ + + I L ++ I S+ ++ Sbjct: 514 LLLTFFYKYLPEIITQGKLFIAQPPLYKIRYKNKDYYIKDDYELEQFKKINKINSLEQEN 573 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +QR+KGLGEMN QLWETT+NP+TR+L++V+I+D A+++FS LMG ++ R+EFI+ Sbjct: 574 VQIQRFKGLGEMNPEQLWETTMNPNTRNLIQVEISDFEAANNIFSILMGKNIKERKEFIE 633 Query: 794 ENSLPSALD 802 + + +D Sbjct: 634 NYATYANID 642 >gi|315640722|ref|ZP_07895824.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM 15952] gi|315483477|gb|EFU73971.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus italicus DSM 15952] Length = 668 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 273/671 (40%), Positives = 389/671 (57%), Gaps = 18/671 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +++ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DNA+DE+L GY D I Sbjct: 3 KKSNEYNDASIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEVVDNAVDEALSGYGDEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ DGS +V D GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 62 KVIIHKDGSISVQDFGRGMPVGMH-TSGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++RI R+G Y F+N G + L G GT V FLP IFS Sbjct: 121 ASVVNALSEWLEVRIVRDGIEYRQRFVNGGHPEGTLEKIGKTKEKNGTTVRFLPDKGIFS 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+YDTL RLRE +FL V+IS D R + E Y+ GI+ FV YL+ K L Sbjct: 181 TTKFSYDTLAERLRESAFLLRGVKISFTDLREDDK-EDVFHYEEGIKEFVEYLNEEKDVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I G ++ I +++A+++NDG+ E +L F NN+ KDGGTH +G+++ALT+ + Y Sbjct: 240 TP-IIYFSGEKEMIEVEVALQYNDGFSETILSFVNNVRTKDGGTHEAGMKAALTKALNEY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361 K K+ R++ G D REG +SVLSI++P+ +F QTKEKL + R+ V++ ++ Sbjct: 299 ARKVGLLKEKDRNLEGSDFREGLSSVLSIRVPEHLLQFEGQTKEKLGTPAARTAVDNAIS 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L +L+E+ ++++V+K + A R+AAR+AR+ +K + L GKL Sbjct: 359 EQLGFYLQENNEISQLLVRKAIKAREAREAARKAREESRNGKKKKKGESLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 419 KNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIY 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI P Sbjct: 479 TIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRNFIDDALK 596 PLY +++G + V + ++ L + + G ++ + L Sbjct: 538 PLYKVSKGTGKKEVIEYAWTDEELQTVTEKVGRGYMLQRYKGLGEMNADQLWET-----T 592 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 +D + + + + + S + L + Sbjct: 593 MDPETRTLVQVRIDDPAQAERRVTTLMGDKVEPRRKWIESHVQFSLEEDGSLLDSVEEKP 652 Query: 657 INNSDILVKRI 667 +N V+ I Sbjct: 653 VNRPAYSVEDI 663 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ ++ S + ++ ++ Sbjct: 376 VRKAIKAREAREAARKAREESRNGKKKKKGESLLSGKLTPAQSKNPKKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 436 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K ++ Sbjct: 496 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKEVIEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L T+ +G +QRYKGLGEMNA QLWETT++P+TR+L++V+I D +QA+ Sbjct: 556 WTDEELQTVTEKVGRGYMLQRYKGLGEMNADQLWETTMDPETRTLVQVRIDDPAQAERRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 616 TTLMGDKVEPRRKWIESH 633 >gi|307708511|ref|ZP_07644976.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261] gi|307615427|gb|EFN94635.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261] Length = 648 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F+P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFIP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|229174259|ref|ZP_04301792.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3] gi|228609116|gb|EEK66405.1| DNA topoisomerase 4 subunit B [Bacillus cereus MM3] Length = 654 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 268/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N GI L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTK-ESGTTIHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y KI+IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKIVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|145631753|ref|ZP_01787514.1| DNA gyrase subunit B [Haemophilus influenzae R3021] gi|144982614|gb|EDJ90160.1| DNA gyrase subunit B [Haemophilus influenzae R3021] Length = 483 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 282/483 (58%), Positives = 359/483 (74%), Gaps = 4/483 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N +Y A SI++LKGLDAV+KRP MYIGDTD +GLHHM++EV+DNAIDE+L G+ Sbjct: 1 MSETT-NDNYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGH 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D+GRGIP D+H EEG+SAAEVIMT LHAGGKF+ SYKVSGGL Sbjct: 60 CSDIIVTIHDDNSVSVQDDGRGIPVDIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS L+L I+R+G+++E + G +PL V G TGT V F PSSD Sbjct: 120 HGVGVSVVNALSDKLQLTIRRQGHVHEQFYHLGEPQSPLTVIGETE-ATGTTVRFWPSSD 178 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF++ F+Y L RLRELSFLNS V I LIDKR Y+GGI+AFV YL+++K Sbjct: 179 IFAITTFDYKILAKRLRELSFLNSGVSIRLIDKRDGSE--DHFHYEGGIQAFVEYLNKNK 236 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 P+ P +D I +++A++WNDG +ENV CFTNNIPQ+DGGTHL+G R ALTR + Sbjct: 237 NPIHPKPFYFTAEKDGIGVEVALQWNDGVNENVYCFTNNIPQRDGGTHLAGFRGALTRSL 296 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY+E KK+K + GDD REG +++S+K+PDP+FSSQTK+KLVSSEV+S VES + Sbjct: 297 NSYMENEGMLKKEKVATSGDDAREGLVAIISVKVPDPKFSSQTKDKLVSSEVKSAVESAM 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 N+ + +L E+P +AKIIV +++ A+ R+AAR+AR++TRRKG LDIA LPGKLADC E+ Sbjct: 357 NEKMQEYLLENPADAKIIVNQIIMAARAREAARKAREMTRRKGALDIAGLPGKLADCQEK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SEL+LVEGDSAGGSAK GR R+ QAILPL+GKILNVE+ARFDK + G + Sbjct: 417 DPALSELYLVEGDSAGGSAKVGRDRKTQAILPLKGKILNVEKARFDKNVVFPRSGHINYC 476 Query: 481 LGT 483 Sbjct: 477 FRL 479 >gi|148821196|ref|YP_001285950.1| DNA gyrase subunit B [Mycobacterium tuberculosis F11] gi|148719723|gb|ABR04348.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis F11] Length = 714 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 269/650 (41%), Positives = 378/650 (58%), Gaps = 37/650 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A SI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ GYA Sbjct: 44 KKKAQDEYGAASITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMAGYAT 102 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + V L DG V+D+GRGIP H GI +V+MT+LHAGGKF+ +Y +SGGLHG Sbjct: 103 TVNVVLLEDGGVEVADDGRGIPVATHAS-GILTVDVVMTQLHAGGKFDSDAYAISGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L++ IKR+G + + L G+ TG+ V F +F Sbjct: 162 VGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLG-LKQ-GAPTKKTGSTVRFWADPAVF 219 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------------- 214 +++++T+ RL+E++FLN + I+L D+R Sbjct: 220 ETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAES 279 Query: 215 --SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHEN 272 + + T Y GG+ FV +++R K + S + G +++AM+WN GY E+ Sbjct: 280 TAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSES 339 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+S+ Sbjct: 340 VHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISV 399 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ R AA Sbjct: 400 KVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAA 459 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR+L RRK DI LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAILP Sbjct: 460 RKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILP 519 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAH 512 LRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG H Sbjct: 520 LRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIGKLRYHKIVLMADADVDGQH 578 Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 I TLLLT FR M LI NG +++ +PPLY + +S + D L+ L Sbjct: 579 ISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGK 638 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 639 KINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 686 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 629 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 687 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 688 SILMGEDVDARRSFITRNAKDVRFLDV 714 >gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14] Length = 644 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 293/585 (50%), Positives = 394/585 (67%), Gaps = 5/585 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y AD IQIL+GL+AV+KRP MYIG T GLHH++YE++DNA+DE+L GY D I V Sbjct: 9 DAEYGADQIQILEGLEAVRKRPGMYIGSTS-VRGLHHLVYEIVDNAVDEALAGYCDKIQV 67 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N D S TV+DNGRGIP ++ + G+ A EV+ T LHAGGKF YKVSGGLHGVG S Sbjct: 68 DINKDNSITVTDNGRGIPVGINHKAGLPAVEVVFTILHAGGKFGGGGYKVSGGLHGVGAS 127 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALS WL++ I EG IY+ + G + L V GT+VTFLP +IF Sbjct: 128 VVNALSEWLEVEIANEGKIYKQRYERGKVCYKLRVDRDCEPEMRGTKVTFLPDKEIFEET 187 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 F+Y+TL+ R RE++FL ++I L D R E E Y+GGI+ FV+YL++ K L + Sbjct: 188 VFDYNTLKQRFREMAFLTKGLKIHLRDLREEEIHEHIFHYEGGIKEFVTYLNKSKTALYE 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I +G +DN+++++AM+ ND Y+E F NNI +GGTH++G RSALT+ Y + Sbjct: 248 QIIYCEGMKDNVAVEVAMQHNDSYNETTYGFVNNITTPEGGTHIAGFRSALTKVFNDYGK 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K++++ + G+D REG T+++S+K+ DP+F QTK+KL +SE R V++ V L Sbjct: 308 KNKLLKENEQ-LSGEDIREGLTAIVSVKIEDPQFEGQTKQKLGNSEARGAVDNIVRTQLE 366 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE++P AK+I++K + A R+AAR+ARDLTRRK L+ SLPGKLADCS++DP K Sbjct: 367 IFLEQNPSVAKMIIEKSVMAQRAREAARKARDLTRRKSALEGMSLPGKLADCSDKDPSKC 426 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+++VEGDSAGGSAK R R QAILPLRGKILNVE+AR DK+ + EI +ITA GTGI Sbjct: 427 EIYIVEGDSAGGSAKTARDRATQAILPLRGKILNVEKARLDKIYGNAEIKAMITAFGTGI 486 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 +D FDI+KLRYHKIIIMTDADVDGAHI TLLLTF +R MP LI G++Y+ +PPLY + Sbjct: 487 HED-FDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYKLE 545 Query: 546 RGKSLQYVKDEESLEDYLINQSLS-EEIELFCDSKGVISKNDLRN 589 + K + Y ++ L L G + L Sbjct: 546 KNKKVWYAYSDDELNQILTEVGRDSNNKIQRYKGLGEMDAEQLWE 590 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 11/161 (6%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL-----TILS 706 G + DI R + + ++G+ I + + R + I+E Y+ + Sbjct: 484 TGIHEDFDISKLRYHKIIIMTDADVDGAHISTLLLTFLYRFMPDLIKEGYVYLAQPPLYK 543 Query: 707 LICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L N L + +GR + +QRYKGLGEM+A QLWETT++P+ R LLRV Sbjct: 544 LEKNKKVWYAYSDDELNQILTEVGRDSNNKIQRYKGLGEMDAEQLWETTMDPEHRILLRV 603 Query: 766 KITDAS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + D + + D F+ LMGD+VEPRREFI+EN+ LDI Sbjct: 604 TMDDETSSELDLTFTTLMGDKVEPRREFIEENAKYVQNLDI 644 >gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435] gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus haemolyticus JCSC1435] Length = 644 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 300/640 (46%), Positives = 416/640 (65%), Gaps = 6/640 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L GS + TGT + F S+I Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADSEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN + I+L D+R E RE T Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQREDTYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ + PI I ++D++ I++AM++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHEEPIYIHQTKDDVEIEIAMQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRI 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY +S K DK + G+D REG T+V+SIK DP+F QTK KL +SEVR +V+ Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + +L EHP A+I+V+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 364 FAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++SE+FLVEGDSAGGS K+GR + QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKID 598 PLY + +GK YV ++ L+ S + G ++ + L + Sbjct: 543 PLYKLAQGKQKYYVFNDRELDKLKSELSPTPKWQISRYKGLGEMNADQLWETTMNPENRM 602 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L + + ++ V + ++ + L Sbjct: 603 MLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANL 642 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 113/280 (40%), Gaps = 32/280 (11%) Query: 550 LQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 +++ + ++ ++ + + + + +++ I P Sbjct: 369 ERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEE 428 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI----------- 657 + F+ + +G E ++ LN + ++ + + Sbjct: 429 SEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG 488 Query: 658 --NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTIL-----SLI 708 DI R + V ++G+ I + + R IE Y+ I L Sbjct: 489 IGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLA 548 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRSL 762 K + LD + S +S + RYKGLGEMNA QLWETT+NP+ R + Sbjct: 549 QGKQKYYVFNDRE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTMNPENRMM 603 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L+VK+ DA +AD F LMGD VE RR+FI++N++ + LD Sbjct: 604 LQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643 >gi|269314033|gb|ACZ36918.1| DNA gyrase B [Mycobacterium bolletii] gi|269314039|gb|ACZ36921.1| DNA gyrase B [Mycobacterium massiliense] Length = 651 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 265/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + VT+ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V D+GRGIP +H GI +V+MT+LHAGGKF+ SY VSGGLHGVG+SVVN Sbjct: 60 ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS+ L++ I R+G ++ + L G+A TGT V F +IF +++ Sbjct: 119 ALSTKLEVEILRDGFEWQQVYTRSEP-GTLQK-GAATKKTGTTVRFWADPEIFETTTYDF 176 Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219 +T+ RL+E +FLN + I L D+R + + Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSEVTDEVVSDTAEAPKNAEEQAAESSAPHKVK 236 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 Y G+ FV +++R K + + + G + +++AM+WN GY E+V F N Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y ++ K+ ++ GDD REG +V+S+K+ +P+F Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EV+S V+ N+ L W + +P +AK +V K + ++ R AAR+AR+L Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILPLRGKI+N Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M L+ +G +++ +PPLY + ++ + D L+ L ++ D Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRTQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 I + +D + + + ++ A + Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637 Query: 778 SRLMGDEVEPRREF 791 S LMG++VE RR F Sbjct: 638 SILMGEDVEARRSF 651 >gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001] gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001] Length = 653 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 280/630 (44%), Positives = 405/630 (64%), Gaps = 10/630 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A I V +N Sbjct: 19 YDASQIQVLSGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATRIEVEVN 77 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGVG VVN Sbjct: 78 PDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGALVVN 137 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQDFN 188 ALS+ L + + R G Y + F+ G ++ P+ G A ++ GT+V F P DIF+ Sbjct: 138 ALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTF 197 Query: 189 YDTLQ-HRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 D + R+REL+FLN ++++ DKR+ ++ Y+GG++++V +L + K+ L+Q P Sbjct: 198 DDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEP 257 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I ++G I++++A+++ + YH +L F NNI +GGTH +G ++ALTR I Y +S Sbjct: 258 IYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRS 317 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367 K + GDD REG T+V+S+K PDP+F QTK KL +S+ R+VV+ +D + + Sbjct: 318 GALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKF 377 Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSEL 427 L EHP + K+I+ K + AS R AA+RAR++TR+K L+I++LPGKLAD + +DP+ SEL Sbjct: 378 LMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISEL 437 Query: 428 FLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQ 487 F+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +++L+++EI TL TA+GTG G Sbjct: 438 FIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGFG- 496 Query: 488 DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRG 547 FDI+K RYHK+IIMTDADVDGAHIRTLLLT +R M ++ G++YI +PPLY + +G Sbjct: 497 QDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQG 556 Query: 548 KSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP 606 K ++Y+ +E L+D L S + G + + L +D + Sbjct: 557 KMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWET-----TMDPDTRRLLR 611 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLAS 636 K + I + + + + Sbjct: 612 VSPKDAEQADGIFEMLMGDHVEPRRKFIEE 641 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 3/71 (4%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ASQLWETT++PDTR LLRV DA QAD +F LMGD VEPRR+FI+EN Sbjct: 583 IQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEEN 642 Query: 796 SLPS---ALDI 803 ++ +D+ Sbjct: 643 AVFVDPNNIDV 653 >gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 633 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 306/585 (52%), Positives = 417/585 (71%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINPDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G + E+SF G + L G A TGT V F P ++IF Sbjct: 119 ISVVNALSKWTKVQVAQNGIVQEISFARGNKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFSFDTLKMRLQELAFLNKGLRITLSDLRQEEPRVESFHYEGGLSSFITFLNENKEVVN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVINIENTKDDVVVDVALQYNDTYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V+DGL Sbjct: 298 RKAGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSDGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+I+SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEISSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 478 IGEE-FDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSQWYVYSDAELAAKLDEVGREGIAIQRYKGLGEMNPEQLWE 581 Score = 187 bits (475), Expect = 6e-45, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGEEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 ++ V + F + + I + + + + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQIKKGKSQWYVYSDAE 550 Query: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 L + +GR+GI++QRYKGLGEMN QLWETT+NP+ R++L+V + D+ +AD +F+ LM Sbjct: 551 LAAKLDEVGREGIAIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVLM 610 Query: 782 GDEVEPRREFIQENSLPS-ALD 802 GD+VEPRR+FI++N+ LD Sbjct: 611 GDKVEPRRKFIEDNAKYVRNLD 632 >gi|322392250|ref|ZP_08065711.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus peroris ATCC 700780] gi|321144785|gb|EFX40185.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus peroris ATCC 700780] Length = 648 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 283/626 (45%), Positives = 408/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+++I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEDIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIEVFIEPDDSITVIDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +R+ + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLKVIGDT-DKTGTIVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVKYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ S ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGSEQETRLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADRI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G + + T L +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 546 KVGSEIKEYIQPGSEQE-TRLQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADRIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|262200051|ref|YP_003271259.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247] gi|262083398|gb|ACY19366.1| DNA gyrase, B subunit [Gordonia bronchialis DSM 43247] Length = 685 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 279/657 (42%), Positives = 379/657 (57%), Gaps = 40/657 (6%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + VTL Sbjct: 19 EYSADSISILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYASKVEVTL 77 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V D+GRGIPTD+H G EV+MT+LHAGGKF+ +Y VSGGLHGVG+SVV Sbjct: 78 LEDGGVEVVDDGRGIPTDMHA-TGSPTVEVVMTQLHAGGKFDSDAYAVSGGLHGVGISVV 136 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ ++L I G +E ++ + PL G A TGT V F P +IF F+ Sbjct: 137 NALSTKVELEINYGGFHWEQTYDHAKPQ-PLEK-GDATRKTGTLVRFWPDPEIFETTVFS 194 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR--------------------------------SP 216 +T+ RL+E++FLN + I+L DKR Sbjct: 195 AETVARRLQEMAFLNKGLTITLTDKRPRAVEAPPGDANGDESVADAAETVKTEEEKKADA 254 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 +P+ T Y G+ ++ +L+R K+P+ S I +++AM+WN GY E+V F Sbjct: 255 KPKTRTYHYPDGLVDYIKHLNRTKQPIHNSVIGFTAKGTGHEVEIAMQWNAGYSESVHTF 314 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N I +GGTH G R+ALT + Y K+ + GDD REG +V+S+K+ D Sbjct: 315 ANTINTHEGGTHEEGFRAALTSTVNKYALDKKLLKEKDGKLTGDDIREGLAAVISVKVGD 374 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL ++EV+ V+ N+ L+ W E +P EAKII+KK +D+S R AAR+AR Sbjct: 375 PQFEGQTKTKLGNTEVKGFVQKTCNEHLAHWFESNPAEAKIIIKKAVDSSQARLAARKAR 434 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 +L RRK DI LPGKLADC DP K E+++VEGDSAGGSAK GR QAILPLRGK Sbjct: 435 ELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAILPLRGK 494 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 I+NVE+AR D++L + E+ ++ITA GTGI D FDI KLRYHKI++M DADVDG HI TL Sbjct: 495 IINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTL 553 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELF 575 LLT FR M LI +G +Y+ +PPLY + K ++ + + L + Sbjct: 554 LLTLLFRFMRPLIEHGHVYLAQPPLYKLKWQKREPEFAYSDRERDGLLEAGRTAGWKINT 613 Query: 576 CDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 D N + T + A +F+ +++ Sbjct: 614 DDGIQRYKGLGEMNAKELWETTMDPEVRVLRQV--TLDDAAAADELFSILMGEDVAA 668 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA +LWETT++P+ R L +V + DA+ AD+LFS LMG++V RR FI N Sbjct: 617 IQRYKGLGEMNAKELWETTMDPEVRVLRQVTLDDAAAADELFSILMGEDVAARRSFIARN 676 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 677 AKDVRFLDV 685 >gi|310825640|ref|YP_003957997.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612] gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612] Length = 640 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 300/646 (46%), Positives = 428/646 (66%), Gaps = 10/646 (1%) Query: 1 MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MSDN++N + Y AD IQ+L+GL+AV+KRP MYIG T G+ GLHH++YEV+DN+IDE+L Sbjct: 1 MSDNLKNEKNDYTADQIQVLEGLEAVQKRPGMYIGST-GKQGLHHLVYEVVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY I VT++ + TV D+GRGIPTD++ + + E+ +T LHAGGKF YKVSG Sbjct: 60 GYCKNIVVTIDKNNGITVVDDGRGIPTDMNHKMKKTGVELALTVLHAGGKFGGGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALSS L + +K+ IY +F G + L VTG+ T V F P Sbjct: 120 GLHGVGVSVVNALSSELTVEVKQNKKIYHQTFAKGKKTSELEVTGNTNRTG-TTVHFQPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 DIF +++D L+HRLREL+FLN V I+L D+R E R+ T Y+GGI +++ Y+++ Sbjct: 179 PDIFDELVYDFDVLEHRLRELAFLNKGVSITLADEREAEKRKETYCYEGGIRSYIEYMNK 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K PL + + D+ S+++A ++ GY EN+ + NNI +GG+HL+G +SALTR Sbjct: 239 NKDPLYEQIAYYEKEMDDYSLEIAFQYTAGYSENIYSYANNIYTPEGGSHLNGFKSALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y K+ K + +++ G+D REG T+++SIK+ DP+F QTK KL + EV+ +VE+ Sbjct: 299 TINTYARKNNYIKGNDKNLTGEDVREGLTAIISIKLLDPQFEGQTKTKLGNPEVKGIVET 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V D LSA+LEE+P AK +++K L AS R+AA++AR+LTRRK LD +LPGKLADC Sbjct: 359 IVGDELSAFLEENPTIAKTVIEKTLSASRAREAAKKARELTRRKSALDTTALPGKLADCR 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 E+DP SE+F+VEGDSAGGSAK GR QAILPLRGKILNVE++R D++L++ + ++I Sbjct: 419 EKDPSMSEIFIVEGDSAGGSAKSGRDSRIQAILPLRGKILNVEKSRLDRILTADTLKSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTG+G+D F++ K RYHKIIIMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGVGED-FNVEKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRGLIEEGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PPL+ + RG+ ++YV +E++L+ ++ S+ G + + L +D Sbjct: 538 PPLFKVARGQHVEYVYNEKALDKMFEDKDRSKYTIQRYKGLGEMDAHQLWET-----TMD 592 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + + + + + Q + A N Sbjct: 593 PSVRILNRVNIEDAAYADEVFTILMGDKVQPRKEFIERNAAKVKNL 638 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 11/189 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + A L + + + ++ ++ V + + Sbjct: 457 ILNVEKSRLDRILTADTLKSMITAFGTGVGEDFNVEKARYHKIIIMTDADVDGAHI--RT 514 Query: 681 SIFSFGSKYKRIFSNRIEENY----LTILSLICNGDKIKITGPCSLLDTIFSIG-RKGIS 735 + +F +Y R IEE Y L + G ++ LD +F R + Sbjct: 515 LLLTFFYRYMR---GLIEEGYVYIAQPPLFKVARGQHVEYVYNEKALDKMFEDKDRSKYT 571 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P R L RV I DA+ AD++F+ LMGD+V+PR+EFI+ N Sbjct: 572 IQRYKGLGEMDAHQLWETTMDPSVRILNRVNIEDAAYADEVFTILMGDKVQPRKEFIERN 631 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 632 AAKVKNLDI 640 >gi|116333451|ref|YP_794978.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367] gi|116098798|gb|ABJ63947.1| DNA topoisomerase IV subunit B [Lactobacillus brevis ATCC 367] Length = 655 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 259/597 (43%), Positives = 363/597 (60%), Gaps = 14/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKAKPK--YDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S TV D+GRG+P +H GI EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GKEINVTIHQDNSITVVDHGRGMPVGMHAS-GIPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSS L + I R+G Y+ F G L G+ GT + F P S Sbjct: 117 HGVGASVVNALSSSLTVTIVRDGVRYQEKFAKGGHPQGTLKKLGNTRAHNGTTIDFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ +N+ TL RLRE +FL V+I+L D+R + R ++ GI+ FVSYL+ Sbjct: 177 QIFTTTVYNFGTLAERLRESAFLLKGVKITLTDEREGQERTEEYHFESGIKEFVSYLNED 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + GS+D I +++A ++NDGY EN+L F NN+ KDGG+H +G+RS T+ Sbjct: 237 -KDTLGDIMYFDGSKDGIEVEVAAQYNDGYTENLLSFVNNVRTKDGGSHEAGMRSGWTKA 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++V+S+++P+ +F QTKEKL + E R++V+ Sbjct: 296 FNEYARKVGLLKERDKNLEGTDVREGLSAVISLRVPEDLLQFEGQTKEKLGTPEARTIVD 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S +++ L +L E+ K+++KK A R+AAR+ARD ++ L GKL Sbjct: 356 SIISEQLGYYLMENGDFGKMLIKKSTQARQAREAARKARDESRNGKRHKKHERLLSGKLT 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+ ++ ++EI Sbjct: 416 PAQSKNAAKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMKNEEIS 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F+I Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G +Y Sbjct: 476 TMIYTIGAGVG-TEFNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDAGRIY 534 Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY I + ++Y + L + + G + L Sbjct: 535 IALPPLYRIQKTGKKPTIEYAWTNDELNEKTKKIANHGYHLQRFKGLGEMDAEQLWE 591 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 377 IKKSTQARQAREAARKARDESRNGKRHKKHERLLSGKLTPAQSKNAAKNELFLVEGDSAG 436 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ +++ + I ++ N Sbjct: 437 GSAKQGRNRKFQAILPLRGKVLNTEKAKLPDIMKNEEISTMIYTIGAGVGTEFNIEDANY 496 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--- 717 D ++ + F + I + RI + + G K I Sbjct: 497 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDAGRIYIALPPLYRIQKTGKKPTIEYAW 556 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + I G +QR+KGLGEM+A QLWETT++PD R+L+RV+I DA+ A+ Sbjct: 557 TNDELNEKTKKIANHGYHLQRFKGLGEMDAEQLWETTMDPDNRTLIRVQIDDAALAERRV 616 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ N Sbjct: 617 TTLMGDKVEPRRKWIESN 634 >gi|253580826|ref|ZP_04858089.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847896|gb|EES75863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 664 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 254/626 (40%), Positives = 363/626 (57%), Gaps = 15/626 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +D + ++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY Sbjct: 22 TDMAKKNTYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYC 80 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 +I V L DGSCTV+DNGRGIP D+H++ G+SA ++ T LHAGGKF+ +YK SGGLH Sbjct: 81 SLIHVILEKDGSCTVTDNGRGIPVDMHEK-GVSAERLVFTTLHAGGKFDNSAYKTSGGLH 139 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFL 176 GVG SVVNALS++L ++I R+G ++ + GI L G TGT + FL Sbjct: 140 GVGSSVVNALSTYLDIKISRDGYVHHDHYERGIPTIELEEGLLPKLGKT-RQTGTSINFL 198 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P +IF F+ ++ RL E ++LN + I DKR E +IT GI F+ L Sbjct: 199 PDPEIFEKTRFSATEVKSRLHETAYLNPELTIRFEDKRGAEVEDITYHEPDGIIGFIKDL 258 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + + L P+ ++G D I +++A ++ + + ENVL F NNI +GGTHL+G ++ Sbjct: 259 NHSAEVLH-DPVYLKGEADGIQVEVAFQFTNEFRENVLGFCNNIYNAEGGTHLTGFKTTF 317 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T + +Y + K + G D R G T+V+SIK P+PRF QTK KL + + Sbjct: 318 TTVMNTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPEPRFEGQTKTKLDNQDASRAT 377 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 V + + + + + K I+ A+ +R RA+ K S GKLA+ Sbjct: 378 GKVVGEQMVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLAN 436 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C ++DP + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T Sbjct: 437 CEKKDPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKT 496 Query: 477 LITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +I A G G + + FDI KLRY KI+IM DADVDGAHI TLLLT F+R MP LI G Sbjct: 497 MINAFGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPDLITEGH 556 Query: 534 LYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FI 591 +YI PPLY + + +Y+ D+++LE Y G + L + Sbjct: 557 VYIAMPPLYKVMPKKGQEEYLYDDKALERYRRAHKPGSFTLQRYKGLGEMDAEQLWETTL 616 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAV 617 + ++ K ++ + E + Sbjct: 617 NPETRMMKRVEIEDARLASSVTEILM 642 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 52/69 (75%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA A + LMG +V PR++FI E Sbjct: 596 TLQRYKGLGEMDAEQLWETTLNPETRMMKRVEIEDARLASSVTEILMGSDVPPRKKFIYE 655 Query: 795 NSLPSALDI 803 ++ + LDI Sbjct: 656 HAQDAELDI 664 >gi|225572725|ref|ZP_03781480.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM 10507] gi|225039898|gb|EEG50144.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM 10507] Length = 641 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 254/593 (42%), Positives = 355/593 (59%), Gaps = 14/593 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 3 KKNTYDAASISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSHIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGSCTVSDNGRGIP DLH++ G+SA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VVLEKDGSCTVSDNGRGIPVDLHEK-GMSAERLVFTTLHAGGKFDDSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L ++I R+G I+ + GI L G +TGT V F P + Sbjct: 121 SVVNALSTYLDIKISRDGYIHHDHYERGIPTIELENGLLPRIGKTK-ETGTCVNFSPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN ++ I D R+ +++ GI F+ L++ K Sbjct: 180 IFEKTRFSATEVKSRLHETAYLNPALTIEFEDSRAETAQKVVYHEPEGIVGFIRELNQSK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L P+ ++G + IS++ A ++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 240 EVLH-KPVFLKGESEGISVEAAFQFTNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTSVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K+ + G D R G T+V+SIK P PRF QTK KL + + V + Sbjct: 299 NTYARELGVLKEKDSNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAARVTGKVL 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + + + E K ++ A+ +R RA+ K S GKLA+C ++ Sbjct: 359 GEQLVLYFDRNLEELKAVLSCAEKAAKIRKTEERAKTNLLSKQKYSFDS-NGKLANCEKK 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DPSVCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + + +Y+ D+++LE Y G + L Sbjct: 538 MPPLYKVMPKKGAEEYLYDDKALERYRKTHKSGTFTLQRYKGLGEMDAQQLWE 590 Score = 130 bits (327), Expect = 1e-27, Method: Composition-based stats. Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G + + L+ + G ++QRYKGLGEM+A QLWETTLNP TR L RV+I Sbjct: 547 KKGAEEYLYD-DKALERYRKTHKSGTFTLQRYKGLGEMDAQQLWETTLNPQTRILRRVEI 605 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA A + LMG EV PR+ FI E++ + LD+ Sbjct: 606 EDARLASSVTEVLMGTEVPPRKAFIYEHAQDAQLDV 641 >gi|312867405|ref|ZP_07727614.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405] gi|311097106|gb|EFQ55341.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405] Length = 649 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 285/657 (43%), Positives = 420/657 (63%), Gaps = 17/657 (2%) Query: 1 MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+++ Q + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G+IY + G + + L V G + TGT V F+ Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFI 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ ++++ L R++EL+FLN ++ISL DKR +E Y+GGI ++V Y Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + + PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFEKPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSEAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + + E SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + + ++ A + ++ R FI E +E S Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G + + L+ +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN+ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649 >gi|229162430|ref|ZP_04290391.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803] gi|228620909|gb|EEK77774.1| DNA topoisomerase 4 subunit B [Bacillus cereus R309803] Length = 654 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GN+YE F N GI L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNVYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|120401034|ref|YP_950863.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1] gi|119953852|gb|ABM10857.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1] Length = 675 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 273/678 (40%), Positives = 385/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V + DG V+D+GRGIP +H GI +V+MT LHAGGKF + +Y+VSG Sbjct: 60 GFATKVDVRILEDGGVQVTDDGRGIPVAMHS-TGIPTVDVVMTVLHAGGKFEEGAYQVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L+ I+++G + ++ + L G DTGT + F Sbjct: 119 GLHGVGVSVVNALSTRLEADIRKDGYEWHQTYDRSVP-GTLKQ-GEKSKDTGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 DIF +++++T+ RL+E++FLN + I L D+R Sbjct: 177 PDIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVTPADVVDDVVSDHAEAPKSAEEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ FV +++R K P+ S I G + +++AM+WN G Sbjct: 237 AAEAAAPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSIIDFDGKGEGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ P+F QTK KL ++EV+S V+ N+ LS W E +P EAK +V K + ++ Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RMAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + +S ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G++ I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|290580369|ref|YP_003484761.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans NN2025] gi|254997268|dbj|BAH87869.1| putative DNA topoisomerase IV subunit B [Streptococcus mutans NN2025] Length = 649 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 269/649 (41%), Positives = 397/649 (61%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N DGS TV+D+GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVIINKDGSITVADHGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F + G L G A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS +F Y+T+ RL E +FL +V ++L D+RS E + Y+ G++ FV YL+ Sbjct: 179 DTGIFSTTNFVYNTIAERLNESAFLLKNVTLTLTDERSEETEHVAFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKEILTP-VIYFEGEEADFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +++K + A R+AAR+ARD RK D L GK Sbjct: 358 VDGLVSEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGRKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ D ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G G F ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGAG-PDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++ + ++Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + ++ I I+D + + + + +L Sbjct: 597 TMNPENRTLIRVTIEDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 645 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 55/73 (75%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+ + LMG Sbjct: 566 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIEDLARAERRVNVLMG 625 Query: 783 DEVEPRREFIQEN 795 D+V PRR++I++N Sbjct: 626 DKVPPRRKWIEDN 638 >gi|25011278|ref|NP_735673.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae NEM316] gi|77412221|ref|ZP_00788540.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111] gi|23095702|emb|CAD46888.1| unknown [Streptococcus agalactiae NEM316] gi|77161728|gb|EAO72720.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae CJB111] Length = 649 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 264/649 (40%), Positives = 393/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKQDITVTNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNRIDVIINKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY F N G L G+A +GT V+F+P Sbjct: 119 LHGVGSSVVNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 +FS DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ Sbjct: 179 DQSVFSTIDFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTP-IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R + Sbjct: 298 KSMNDYARKTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +++K + A R+AAR+ARD +K D L GK Sbjct: 358 VDGIVSEKLTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F+I+ + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIHTIGAGVG-PDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + + + + + L + + G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I+D + + + + +L Sbjct: 597 TMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 645 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 519 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 578 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 579 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 638 >gi|152975974|ref|YP_001375491.1| DNA topoisomerase IV subunit B [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024726|gb|ABS22496.1| DNA topoisomerase IV, B subunit [Bacillus cytotoxicus NVH 391-98] Length = 654 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 271/597 (45%), Positives = 385/597 (64%), Gaps = 17/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVIIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTILHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N GI L G ++GT + F P S Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTK-ESGTTMHFKPDS 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 SIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDAIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +V+S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLAAVVSVRVPEELLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE P A ++VKK + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEETPDVATLLVKKAIKAAQAREAARKAREEARTGKKKKRSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F I + Y K++IMTDAD DGAHI+ LLLTFF+R M SLI G ++ Sbjct: 473 TIIYAIGGGVGNE-FSIEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKSLIEAGKVF 531 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN 589 I PPLY +++GK V + ++ L + + I G ++ + L Sbjct: 532 IALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGKGYILQRYKGLGEMNADQLWE 588 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFSIEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + + I+ L ++ KG +Q Sbjct: 514 LTFFYRYMKSLIEAGKVFIALPPLYKVSKGKGKNEVIEYAWSDEELASVTKKVGKGYILQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|213966260|ref|ZP_03394444.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46] gi|213951112|gb|EEB62510.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46] Length = 679 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 280/655 (42%), Positives = 382/655 (58%), Gaps = 47/655 (7%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 YDA SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA + V Sbjct: 5 EHQYDASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYATDVEV 63 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL DG V DNGRGIP ++H G+ +V+MT+LHAGGKF+ +SY VSGGLHGVG+S Sbjct: 64 TLLEDGGVQVRDNGRGIPVEMHPS-GMPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGIS 122 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ ++ + R+G + +F + + ++ G +GT F P +IF D Sbjct: 123 VVNALSTRMETEVIRDGYTWYQNFDQAVPEE--IIRGKKTRGSGTTQRFWPDPEIFETTD 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------------- 215 F +DT+ RLRE++FLN + I+L+DKR Sbjct: 181 FKFDTISRRLREMAFLNKGLTITLVDKRVSEEELEAEALAEQAETESAEIAKDAAEEQKE 240 Query: 216 -------PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 P+ R Y G+ +V L++ K + + I + + +++AM+WN G Sbjct: 241 KTEKTTKPKERRKVFHYPNGLRDYVETLNKSKNIIHPTIISFDAAGEGHEVEIAMQWNSG 300 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G RSALT + Y + K+ + ++ G+DCREG + Sbjct: 301 YSESVHTFANTINTIEGGTHEEGFRSALTSLMNRYAREHRLLKEKENNLSGEDCREGLAA 360 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ DP+F QTK KL ++EVRS V+ N+ + WLE +P EAK IV K + ++ Sbjct: 361 VISVKVADPQFEGQTKTKLGNTEVRSFVQRMTNEHIGHWLEANPAEAKAIVNKAIASAHA 420 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+ARDL RRK D+ LPGKLADC +DPK+SELF+VEGDSAGGSAK GR+ Q Sbjct: 421 RQAARKARDLVRRKSATDLGGLPGKLADCRSKDPKQSELFIVEGDSAGGSAKAGRNSLFQ 480 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILNVE+AR DK L + E+ +ITALGTGI D FDI KLRYHKI++M DADV Sbjct: 481 AILPLRGKILNVEKARLDKTLKNNEVQAIITALGTGI-HDEFDIEKLRYHKIVLMADADV 539 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M LI G +Y+ +PPLY + K Y + + L Sbjct: 540 DGQHIATLLLTLLFRLMRPLIDEGHVYLAQPPLYKLKWAKGEPGYAYSDAERDQLLEEGL 599 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + D ++ A D + + K +E A + Sbjct: 600 AANRKINKDDGVQRYKG---LGEMNAAELWDTTMDPDHRVLRKVALEDAQKADEL 651 Score = 140 bits (354), Expect = 8e-31, Method: Composition-based stats. Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 8/88 (9%) Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + G + I+ +QRYKGLGEMNA++LW+TT++PD R L +V + DA +AD+L Sbjct: 592 DQLLEEGLAANRKINKDDGVQRYKGLGEMNAAELWDTTMDPDHRVLRKVALEDAQKADEL 651 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 F+ LMGD+V RR FI N+ LD+ Sbjct: 652 FTILMGDDVASRRSFITRNAKDVRFLDV 679 >gi|291546804|emb|CBL19912.1| DNA topoisomerase IV subunit B [Ruminococcus sp. SR1/5] Length = 652 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 255/622 (40%), Positives = 355/622 (57%), Gaps = 15/622 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 14 KKDTYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSRIH 72 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGSCTV DNGRGIP D+H + GISA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 73 VVLEKDGSCTVEDNGRGIPVDMHAK-GISAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 131 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L ++I R+G I+ + GI L G TGT V FLP + Sbjct: 132 SVVNALSTYLDIKISRDGYIHHDHYERGIPTIELEAGLLPKLGKT-RGTGTCVNFLPDPE 190 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F ++ RL E ++LN + I D+R P +I GI F+ L+++ Sbjct: 191 IFEKTRFGAADVKSRLHETAYLNPELTIHFEDRRGDTPEDIEYHEPEGIVGFIRDLNKNA 250 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL P+ +G D I +++A ++ + + ENVL F NNI +GGTHL+G ++ T + Sbjct: 251 QPLH-DPVYFKGEADGIQVEVAFQFTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 309 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + G D R G T+V+SIK P PRF QTK KL + + Sbjct: 310 NTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASRATGKVA 369 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + + + KI++ A+ +R RA+ K S GKLA+C ++ Sbjct: 370 GEQLVLFFDRNLETLKIVLSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 428 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 429 DPSLCEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 488 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 489 FGCGFSEGYGNDFDITKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 548 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDAL 595 PPLY + + +Y+ D+++LE Y + G + L ++ Sbjct: 549 MPPLYKVMPKKGQEEYLYDDKALEKYRKSHKPGSFTLQRYKGLGEMDAQQLWETTLNPET 608 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 ++ K ++ E + Sbjct: 609 RMMKRVEIEDARMASDVTEILM 630 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 2/96 (2%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G + + L+ + G ++QRYKGLGEM+A QLWETTLNP+TR + RV+I Sbjct: 558 KKGQEEYLYD-DKALEKYRKSHKPGSFTLQRYKGLGEMDAQQLWETTLNPETRMMKRVEI 616 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA A D+ LMG +V PR+ FI E++ + LDI Sbjct: 617 EDARMASDVTEILMGSDVPPRKAFIYEHATDAELDI 652 >gi|77405922|ref|ZP_00783003.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B] gi|77175496|gb|EAO78284.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae H36B] Length = 642 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 263/641 (41%), Positives = 392/641 (61%), Gaps = 16/641 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I V Sbjct: 2 TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 61 INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALSSWL++ I R+G IY F N G L G+A +GT V+F+P +FS Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ K+ L Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +V+S V++ Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDSIVSEK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L+ +L E+ A +++K + A R+AAR+ARD +K D L GKL ++ Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++EI T+I + Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 479 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537 Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595 Y +++GK + + + + + L + + G ++ + L + Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 I I+D + + + + +L Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631 >gi|81428587|ref|YP_395587.1| DNA topoisomerase IV subunit B [Lactobacillus sakei subsp. sakei 23K] gi|78610229|emb|CAI55278.1| Topoisomerase IV, subunit B [Lactobacillus sakei subsp. sakei 23K] Length = 663 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 260/597 (43%), Positives = 371/597 (62%), Gaps = 13/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 Q Y+ +SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ I Sbjct: 3 NQKQDYNDNSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGFGAEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+ D S +V D+GRG+PT +H + GI EVI+T LHAGGKF Q SYK SGGLHGVG Sbjct: 62 NVTIGADNSISVRDHGRGMPTGMH-QSGIPTIEVILTVLHAGGKFTQNSYKTSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL +R+ R+G YE F N G L G A GT +TF P + IF Sbjct: 121 ASVVNALSEWLTVRVVRDGVAYEERFENGGHPVGTLKKVGKANEPNGTLITFKPDASIFQ 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 V +NY+TL RLRE +FL V+I+L D R+ +E Y GI++FV YL+ K Sbjct: 181 VTTYNYNTLAERLRESAFLLKDVKITLTDLRADPAKEDVFHYPEGIQSFVDYLNED-KDT 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + + +G++++I ++ A ++NDGY EN++ F NN+ DGGTH +G+++ LT+ Y Sbjct: 240 IGNKLYFEGTKEDIEVEFAGQYNDGYSENIMSFVNNVRTGDGGTHEAGMKAGLTKAFNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K+ +++ G D REG ++VLS+++P+ +F QTK KL S + R+ V++ V Sbjct: 300 ARKVNLLKERDKNMEGSDVREGLSAVLSVRIPEELLQFEGQTKGKLGSPQARTAVDNLVY 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL--TRRKGVLDIASLPGKLADCSE 419 + +S +L E+ A+ +V+K L A R+AAR+AR+ +K L GKL Sbjct: 360 EQMSFFLLENGEFAQALVRKSLKAREAREAARKAREQSRNGKKKKKSDGLLSGKLTPAQS 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++L ++EI T+I Sbjct: 420 KNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQEILKNEEINTMIY 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G + F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI P Sbjct: 480 TIGAGVGAE-FKIEDSNYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALP 538 Query: 540 PLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY + + + Y ++ L+ + F + + +D Sbjct: 539 PLYKLQKGAGGKTKIAYAWTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMD 595 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ ++ S + ++ ++ Sbjct: 377 VRKSLKAREAREAARKAREQSRNGKKKKKSDGLLSGKLTPAQSKNAAKNELYLVEGDSAG 436 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + + + ++ + I + +N Sbjct: 437 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQEILKNEEINTMIYTIGAGVGAEFKIEDSNY 496 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG- 718 D ++ + F + I + ++ + L G K KI Sbjct: 497 DKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGKVYIALPPLYKLQKGAGGKTKIAYA 556 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG S QR+KGLGEMNA QLW+TT++P +R+L+RV+I DA+ A+ Sbjct: 557 WTDDELKVVAKEMGKGYSQQRFKGLGEMNADQLWDTTMDPTSRTLIRVRIDDAALAERRV 616 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+EN Sbjct: 617 TTLMGDKVEPRRKWIEEN 634 >gi|325843401|ref|ZP_08167959.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1] gi|325489323|gb|EGC91697.1| DNA topoisomerase IV, B subunit [Turicibacter sp. HGF1] Length = 644 Score = 565 bits (1456), Expect = e-158, Method: Composition-based stats. Identities = 254/566 (44%), Positives = 374/566 (66%), Gaps = 15/566 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++ +Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNAIDE L GY Sbjct: 1 MSTHL---NYNEDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAIDEVLAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ + S +V D+GRG+PT +H + G EVI T LHAGGKF YK SGGL Sbjct: 57 GDHIKVTIHENNSISVQDSGRGVPTGMH-KSGKPTPEVIFTVLHAGGKFGTGGYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS W+++ IKR+GN+Y F N G L + G + +TGT V+F P Sbjct: 116 HGVGASVVNALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSK-ETGTLVSFKPDP 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IFS +++D L RLRE +FL ++I LID R+ + T +Y+ GI++FVSYL+ Sbjct: 175 EIFSTTVYSFDILSERLRESAFLLKGLKIELIDLRNDKE--ETFYYEDGIKSFVSYLNEG 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G I +D A +++ Y EN+L F NN+ KDGGTH +G ++ LTR Sbjct: 233 KDTLH-DVVYFEGESQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTRI 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y ++ K+ ++++ G D REG +++S+++P+ +F QTK KL + E RS V+ Sbjct: 292 FNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAVD 351 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L+ + EE+ A ++KK + A+ VR+AAR+AR+ + + +L GKL Sbjct: 352 NVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLT 411 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++P+K+ELFLVEGDSAGGSAK GR+R QAILPLRGK++N E+A+ + + ++EI Sbjct: 412 PAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEIN 471 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G + F+++ + Y K+IIMTDAD DGAHI+ LLLTFFFR M L+ G +Y Sbjct: 472 TMIYTIGAGVGAN-FELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561 I PPLY +++G+ + V + ++ Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDE 556 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 9/259 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + + +E L +KN ++ ++ Sbjct: 375 KAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLTPAQTKN---PQKNELFLVEGDSA 431 Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + QA++ V N E + ++ ++ + I ++ S N Sbjct: 432 GGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEINTMIYTIGAGVGANFELSDVN 491 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 D ++ + F F + + + ++ + + K ++ Sbjct: 492 YDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVYIALPPLYKVSKGQGKKQVVEY 551 Query: 720 C---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L ++ + KG ++QRYKGLGEMNA QLW+TT+NP+TR+L++V I DA+ AD Sbjct: 552 AWTDEELGSVIAKVGKGYTLQRYKGLGEMNADQLWDTTMNPETRTLIQVSIEDAADADHR 611 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRRE+I++N Sbjct: 612 VTTLMGDKVEPRREWIEQN 630 >gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301] gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301] gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942] Length = 645 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 289/638 (45%), Positives = 405/638 (63%), Gaps = 14/638 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DNA+DE+L GY + I V Sbjct: 3 NEYGASQIQVLEGLEPVRKRPGMYIGST-GPKGLHHLVYEVVDNAVDEALAGYCNTIDVR 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L DGSC V+DNGRGIPTD+H + G SA E ++T LHAGGKF YKVSGGLHGVGVSV Sbjct: 62 LLEDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQD 186 VNALS ++++ + REG ++ F G L V A + GT+V F P + IF + Sbjct: 122 VNALSEYVEVTVWREGKTHQQRFEQGNPIGELQVAPDADDRRGTQVRFKPDATIFSETTE 181 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHKK 241 F+Y TL RL+EL++LN+ V+I D+R + EP + T +++GGI +V+Y++ K+ Sbjct: 182 FDYGTLASRLKELAYLNAGVRIDFTDERLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQ 241 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L I +Q +D + ++ A++W D Y +N+L F NNI DGGTH+ GL++ LTR + Sbjct: 242 ALHSEIIFVQSEKDGVQVEAALQWCVDAYSDNILGFANNIRTIDGGTHIEGLKTVLTRTM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 + K K ++ G++ REG T+++S+K+PDP F QTK KL ++EVR +V++ V Sbjct: 302 NTIARKRNKRKDADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLV 361 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L+ +LE HP A +I++K + A +AARRAR+L RRK VL+ ++LPGKLADCS R Sbjct: 362 GETLTEYLEFHPSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSR 421 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI LITA Sbjct: 422 DPGESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITA 481 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LG GI + FD ++LRYH+I+IMTDADVDGAHIRTLLLTFF+R SL+ G++YI PP Sbjct: 482 LGLGIKGEEFDASQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPP 541 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDK 599 LY + RG++ Y +E L++ + + G + L +D Sbjct: 542 LYKLERGRNHYYCYNERELQERIATFPENANYTIQRFKGLGEMMPQQLWET-----TMDP 596 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + E I + + Q + + Sbjct: 597 ETRTMKRVEIEDAAEADRIFTILMGDRVQPRREFIETY 634 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 48/340 (14%) Query: 505 DADVD--GAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLE 560 DAD + G +IR L ++P G + + GI + + + Sbjct: 313 DADNNLSGENIREGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGETLTEYLEFH 372 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFYPN---HDKTFIEQ 615 + + L + I+ F ++ +L R + ++ + + D + FI + Sbjct: 373 PSVADLILEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVE 432 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-----------------GSIN 658 +G + ++ LN K + + Sbjct: 433 GDSAGGSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFD 492 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTIL-----SLIC 709 S + RI + ++G+ I + F +Y+R +E+ Y+ I L Sbjct: 493 ASQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSL---LEQGYIYIACPPLYKLER 547 Query: 710 NGDKIKITGPCSLLDTIF---SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + L + I ++QR+KGLGEM QLWETT++P+TR++ RV+ Sbjct: 548 GRNHYYCYNERELQERIATFPENA--NYTIQRFKGLGEMMPQQLWETTMDPETRTMKRVE 605 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENS--LP-SALDI 803 I DA++AD +F+ LMGD V+PRREFI+ L +ALDI Sbjct: 606 IEDAAEADRIFTILMGDRVQPRREFIETYGPQLSMAALDI 645 >gi|296876169|ref|ZP_06900223.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] gi|296432880|gb|EFH18673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 15912] Length = 649 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 285/657 (43%), Positives = 420/657 (63%), Gaps = 17/657 (2%) Query: 1 MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+++ Q + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G+IY + G + + L V G + TGT V F+ Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIYYQEYRRGHVVDDLKVIGET-DRTGTTVHFI 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ ++++ L R++EL+FLN ++ISL DKR +E Y+GGI ++V Y Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + + PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFEKPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR + Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVVNDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPQETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + + E SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + + ++ A + ++ R FI E +E S Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G + + L+ +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN+ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649 >gi|89101240|ref|ZP_01174064.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] gi|89084046|gb|EAR63223.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911] Length = 661 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 265/610 (43%), Positives = 384/610 (62%), Gaps = 16/610 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 4 ATNQQAFDYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEALAGYG 62 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I V ++ D S +V D GRG+PT +H + G E+I+T LHAGGKF Q YK SGGLH Sbjct: 63 DHIIVKIHKDNSISVQDKGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLH 121 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG SVVNALS WL ++I+R G +YE F N G L G N +GT + F P Sbjct: 122 GVGASVVNALSEWLVVKIRRNGFVYEQRFENGGKPATTLEKVGKT-NQSGTVIHFKPDPA 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS +NY+TL RLRE +FL ++I LID+R ++ GIEAFV YL+ K Sbjct: 181 IFSTTVYNYETLCERLRESAFLMKGMKIELIDERHD--ARDLFHFETGIEAFVEYLNEEK 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L + +G + I +D A ++NDGY ENVL F NN+ KDGGTH +G ++A+TR Sbjct: 239 DVLHP-VVSFEGEHNQIEVDFAFQFNDGYSENVLSFVNNVRTKDGGTHEAGSKTAMTRVF 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K K+ +++ G D REGF++++S+++P+ +F QTK KL +SE RS V++ Sbjct: 298 NEYARKVGLLKEKDKNLDGSDIREGFSAIISVRVPEELLQFEGQTKGKLGTSEARSAVDA 357 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ LS +LEE+P + +++KK + A R+AAR+AR+ R +K A L GKL Sbjct: 358 VVSEHLSYFLEENPNISSLLIKKAIKAYQAREAARKAREEARGGKKRKRSEAVLSGKLTP 417 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI T Sbjct: 418 AQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLQDIFKNEEINT 477 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I A+G G+G D F++ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++I Sbjct: 478 IIHAIGAGVGAD-FNVEDVNYEKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFI 536 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY ++ + + ++Y ++ L+ + I+ + + + +D Sbjct: 537 ALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIGKGYMIQRYKGLGEMNADQLWETTMD 596 Query: 593 DALKIDKLIK 602 + ++ Sbjct: 597 PESRTLIRVR 606 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I ++ N + +V + Sbjct: 458 VINTEKAKLQDIFKNEEINTIIHAIGAGVGADFNVEDVNYEKVVIMTDADTDGAHIQVLL 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I + ++ + + G K KI L + IG KG + Sbjct: 518 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGIGKKEKIEYAWSDDELQGAMKKIG-KGYMI 576 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT++P++R+L+RV+I DA++A+ + LMGD+VEPRR++I+ N Sbjct: 577 QRYKGLGEMNADQLWETTMDPESRTLIRVRIDDAARAERRVTTLMGDKVEPRRKWIETN 635 >gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus] Length = 644 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 296/591 (50%), Positives = 403/591 (68%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L GS + TGT + F +I Sbjct: 125 GVGSSVVNALSEDLEVYVHRNDTIYHQAYKKGVPQFDLKEVGST-DKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN + I+L D+R E RE T Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQKRIRELAFLNKGISITLRDEREDVEQREDTYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ + PI I ++D++ I++AM++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHEEPIYIHQTKDDVEIEIAMQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRI 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY +S K DK + G+D REG T+V+SIK DP+F QTK KL +SEVR +V+ Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + +L EHP A+I+V+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 364 FAEHFERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++SE+FLVEGDSAGGS K+GR + QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KKPEESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY + +GK YV ++ L+ S + G ++ + L Sbjct: 543 PLYKLAQGKQKYYVFNDRELDKLKSELSPTPKWQISRYKGLGEMNADQLWE 593 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 63/280 (22%), Positives = 112/280 (40%), Gaps = 32/280 (11%) Query: 550 LQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNH 608 +++ + ++ ++ + + + + +++ I P Sbjct: 369 ERFLYEHPNVARIVVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSKKPEE 428 Query: 609 DKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI----------- 657 + F+ + +G E ++ LN + ++ + + Sbjct: 429 SEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTG 488 Query: 658 --NNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-KRIFSNRIEENYLTIL-----SLI 708 DI R + V ++G+ I + + R IE Y+ I L Sbjct: 489 IGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLA 548 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGIS------MQRYKGLGEMNASQLWETTLNPDTRSL 762 K + LD + S +S + RYKGLGEMNA QLWETT+NP+ R + Sbjct: 549 QGKQKYYVFNDRE-LDKLKSE----LSPTPKWQISRYKGLGEMNADQLWETTMNPENRMM 603 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 L+VK+ DA +AD LMGD VE RR+FI++N++ + LD Sbjct: 604 LQVKLEDAIEADHTCEMLMGDVVENRRQFIEDNAVYANLD 643 >gi|312869236|ref|ZP_07729408.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3] gi|311095257|gb|EFQ53529.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3] Length = 648 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 291/599 (48%), Positives = 397/599 (66%), Gaps = 13/599 (2%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MSD + S YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MSDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I V +N D S TV DNGRGIP D+ + G A E + T LHAGGKF Y Sbjct: 60 EALAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQTGKPALETVFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTE 172 KVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + V A + GT Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTSMKVINDHLAEDIHGTT 179 Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F P IF +N TL +RLREL+FLN ++I++ DKR EP Y+GGI Sbjct: 180 VHFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDDEPERQDFHYEGGIRH 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 +V YL+ K L + PI ++G + I++++++++ D Y +L FTNNI +GGTH +G Sbjct: 240 YVDYLNEDKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSELLTFTNNIHTYEGGTHETG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S+ Sbjct: 300 FKMALTRVINDYGHKANILKSNE-TLSGDDVREGMTAVVSIKHPDPQFEGQTKTKLGNSD 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++LP Sbjct: 359 ARTATDHVFAATFNRFLMEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLAD + +DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++ Sbjct: 419 GKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI +L TALGTG G+D FDI+K YHK+IIMTDADVDGAHIRTLLLT +R M +I + Sbjct: 479 EEIRSLFTALGTGFGED-FDIDKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMRPMITH 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI +PPLY + +GK ++Y++ +E LE + + S + + G + L Sbjct: 538 GYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRV++ DA QA+++F LMG +V PRR+FI++N Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPENRHLLRVQLDDAEQANEIFPMLMGTKVGPRRDFIEQN 639 Query: 796 SLPS-ALD 802 + LD Sbjct: 640 AKFVENLD 647 >gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506] gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506] Length = 646 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 301/647 (46%), Positives = 414/647 (63%), Gaps = 16/647 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G+ I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPT + + G S E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINADGSVTVTDDGRGIPTGIVAKTGKSGIETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS W+++ + R+ ++ F GI LV S N +GT V+FLP + IFS Sbjct: 121 VVNALSEWVEVTVWRDKKVHNQRFERGIPVTDLVDKPSKENRSGTSVSFLPDTQIFSTGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----EPREITMFYKGGIEAFVSYLDRHK 240 +F+Y L RLREL++LN+ V+I+ D+R EP T Y+GGI+ +++Y++R K Sbjct: 181 EFDYTILSGRLRELAYLNAGVKITFSDRRLELLKSSEPHIETYCYEGGIKEYIAYMNRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I IQG R+N+ ++++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEVIFIQGERNNVQVEVSLQWCIDAYSDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+++ ++ G++ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 MNAIARKRNKIKENEPNLGGENIREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE P A I++K + A +AARRARDL RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFRPQVADTILEKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP KSE++LVEGDSAGGSAKQGR R+ QAILPLRGKILN+E+ K+ + EI +LIT Sbjct: 421 RDPSKSEIYLVEGDSAGGSAKQGRDRQFQAILPLRGKILNIEKTDDAKIYKNNEIQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GI D FD ++LRYH I+IMTDADVDGAHIRTLLLTFF+R SL+ G++YI P Sbjct: 481 ALGLGIRGDEFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRNFIDDALKI 597 PLY + RG++ Y + L++ + N+ + G + L + Sbjct: 541 PLYKVERGRNHFYCYSDRELQNLIRNEFPANANYTIQRFKGLGEMMPQQLWET-----TM 595 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + + E I + + +LN Sbjct: 596 NPESRTLKRVEIEDAAEADRIFTILMGDRV-APRREFIETYGPKLNL 641 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 + S +V V + F + + + I + + Sbjct: 490 EFDPSQLRYHHIVIMTDADVDGAHIRTLLLTFFYRYQRSLVDQGYIYIACPPLYKVERGR 549 Query: 712 DKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 + L + I + ++QR+KGLGEM QLWETT+NP++R+L RV+I D Sbjct: 550 NHFYCYSDRELQNLIRNEFPANANYTIQRFKGLGEMMPQQLWETTMNPESRTLKRVEIED 609 Query: 770 ASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 A++AD +F+ LMGD V PRREFI+ LDI Sbjct: 610 AAEADRIFTILMGDRVAPRREFIETYGPKLNLTDLDI 646 >gi|229018787|ref|ZP_04175636.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273] gi|229025031|ref|ZP_04181459.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272] gi|228736237|gb|EEL86804.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1272] gi|228742537|gb|EEL92688.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH1273] Length = 662 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 265/655 (40%), Positives = 398/655 (60%), Gaps = 18/655 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D I+V + Sbjct: 15 QYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVI 73 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 74 HKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 132 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS WL + IKR+G+IYE F N GI L G ++GT + F P + IFS ++ Sbjct: 133 NALSEWLVVTIKRDGSIYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDTTIFSTTNY 191 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ K + Sbjct: 192 NYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-V 248 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Y K Sbjct: 249 VYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 308 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS +++ V++ L+ Sbjct: 309 SLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 368 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423 +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL R+P+ Sbjct: 369 YFLEENPDVATLLVRKAVKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 428 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI T+I A+G Sbjct: 429 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 488 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++I PPLY Sbjct: 489 GVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYK 547 Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--I 597 ++ + + ++Y +E L+ ++ + + + ++ + I Sbjct: 548 VSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLI 607 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 I D + ++ + + + N + ++E Sbjct: 608 RVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 662 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 462 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 521 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 522 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 581 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 582 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 639 >gi|330470839|ref|YP_004408582.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032] gi|328813810|gb|AEB47982.1| DNA gyrase subunit B [Verrucosispora maris AB-18-032] Length = 648 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 267/554 (48%), Positives = 366/554 (66%), Gaps = 11/554 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +N Y A+SI +L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE+L G+ Sbjct: 1 MAAQ-ENQQYGAESITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V L DG V+DNGRG P DLH + EV +T LHAGGKF+ K+Y VSGGL Sbjct: 59 CDTIDVVLLADGGVRVTDNGRGFPVDLHPKLKKPGVEVALTVLHAGGKFDGKAYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ + + I ++G ++ + + L G + TG+ V+F P D Sbjct: 119 HGVGVSVVNALSTRMAVEIHKDGFVWRQQYDHSKPST-LEK-GEPTDRTGSAVSFWPDPD 176 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSY 235 +F DF++ T+ RL+E++FL + I L+D+R + RE+T Y GGI FV + Sbjct: 177 VFETTDFDFQTIYRRLQEMAFLTRGLTIHLLDERVAEGEDGKVREVTFKYDGGIADFVRH 236 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ K P+ ++ I + +S+++AM+WN+ Y E+V F NNI +GGTH G R+A Sbjct: 237 LNASKSPMHKTVIEFGAEEEGMSLEIAMQWNESYGESVYTFANNINTHEGGTHEEGFRAA 296 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LT + Y K + G+D REG +++S+K+ +P+F QTK KL ++ V+S Sbjct: 297 LTSVVNRYGADKK-LLKGDEKLSGEDIREGLAAIISVKLTNPQFEGQTKTKLGNTPVKSF 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+ ND L WL+ +P EAKII+ K A+ R AA++AR L RRK +L+ S+PGKLA Sbjct: 356 VQRVCNDRLVDWLDRNPAEAKIIITKASQAARARIAAQQARKLARRKSLLESGSMPGKLA 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC DP++SE+F+VEGDSAGGSAKQGR QAILP+RGKILNVE+AR D++L + E+ Sbjct: 416 DCQSTDPRESEVFIVEGDSAGGSAKQGRDPRTQAILPIRGKILNVEKARIDRVLKNNEVQ 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LITALGTGI D FD+ KLRYHK+++M DADVDG HI+TLLLT FR M L+ G +Y Sbjct: 476 ALITALGTGI-HDDFDMEKLRYHKVVLMADADVDGQHIQTLLLTLLFRFMRPLVELGHVY 534 Query: 536 IIKPPLYGITRGKS 549 + PPLY I K Sbjct: 535 LAAPPLYKIKWNKK 548 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMN +LWETT+NP TR+L +V + DA+ AD+LFS LMG++VE RR FIQ N Sbjct: 580 IQRFKGLGEMNYPELWETTMNPATRTLRQVTLDDAATADELFSVLMGEDVEARRSFIQRN 639 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 640 AKDVRFLDI 648 >gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80] gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80] Length = 644 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 292/591 (49%), Positives = 402/591 (68%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIENDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L GS TGT + F S+I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGSTE-KTGTVIRFKADSEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 FS +NY+TLQ R+REL+FLN + I+L D+R + + Y+GGI+++V L+ + Sbjct: 184 FSETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQREDTYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY +S K DK + G+D REG T+V+S+K +P+F QTK KL +SEVR +V+ Sbjct: 304 LNSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+IIV+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 364 FSEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++P +SE+FLVEGDSAGGS K+GR + QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KNPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG + FDI+K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVFNDRELDKLKAELNPTPKWQISRYKGLGEMNADQLWE 593 Score = 164 bits (416), Expect = 5e-38, Method: Composition-based stats. Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 24/183 (13%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 466 KARLDRILNNNEIRQMITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 525 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRKGIS------MQRY 739 R IE Y+ I L K + LD + + ++ + RY Sbjct: 526 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKAE----LNPTPKWQISRY 580 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMNA QLWETT+NP+ R +L+VK+ DA +AD F LMGD VE RR+FI++N++ + Sbjct: 581 KGLGEMNADQLWETTMNPENRMMLQVKLEDAVEADQTFEMLMGDVVENRRQFIEDNAVYA 640 Query: 800 ALD 802 LD Sbjct: 641 NLD 643 >gi|73697709|gb|AAZ81471.1| DNA gyrase subunit B [Acholeplasma palmae] Length = 588 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 265/570 (46%), Positives = 366/570 (64%), Gaps = 5/570 (0%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T GE GLHH+++E++DN+IDE+L GYAD ITV + D V+DNGRGI Sbjct: 1 VRKRPGMYIGST-GERGLHHLVWEIVDNSIDEALAGYADTITVEVLKDNIIRVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P +H + G A E I+T LHAGGKF+ SYKVSGGLHGVG SVVNALSS+ + + G Sbjct: 60 PVGIHHKTGKPAVETILTTLHAGGKFDGSSYKVSGGLHGVGASVVNALSSYFIVEVHVNG 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFL 202 I++ F G L + G + GT +TFL D+F ++++TL+ R+++L+FL Sbjct: 120 KIHKQRFEKGFPVTGLDIIGDTTHQ-GTVITFLADPDVFKETTIYDFETLRSRVQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N +++I++ D R EP T Y+GG+ ++ +L K + + + D I++++A Sbjct: 179 NRNIKITITDDRKEEPVSFTYHYEGGLLEYIDFLTGTKTKINANKFYAEKEVDGITLEVA 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 +++ D Y N+ FTNNIP +GG H G + AL R + Y + + K I DD Sbjct: 239 LQYTDSYATNLYSFTNNIPTHEGGMHEDGFKMALNRVLAKYAKDNN-LLKKDEPFISDDT 297 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T+++S+K PDP+F QTK KL + EVR + V + +L E+P +AK I+ K Sbjct: 298 REGLTAIISVKHPDPQFEGQTKTKLGNVEVRQIASQVVGETFERYLLENPTDAKAIIDKS 357 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 L A+ R AAR+AR+ TRRK LD KLADC ++P SEL++VEGDSAGGSAKQG Sbjct: 358 LLAARARIAARKAREATRRKSPLDALGFASKLADCRSKNPAISELYIVEGDSAGGSAKQG 417 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAILPLRGK+LNVE+AR DK+LS+ EI +LI A+GTGIG++ F+ K RYHKI+I Sbjct: 418 RESEYQAILPLRGKVLNVEKARIDKVLSNNEILSLIQAIGTGIGEE-FNPEKARYHKIVI 476 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTFFFR LI G++Y +PPLY + GK ++YV D+E+L Sbjct: 477 MTDADVDGAHIRTLLLTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDDEALPKA 536 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592 L ++ + + + +D Sbjct: 537 LEQLGGKPSMQRYKGLGEMNPEQLWETTMD 566 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + V +++ + + I + ++ +V V + Sbjct: 432 VLNVEKARIDKVLSNNEILSLIQAIGTGIGEEFNPEKARYHKIVIMTDADVDGAHIRTLL 491 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I I + L + +L + +G K SMQRYK Sbjct: 492 LTFFFRYFKPLIDLGYIYFAQPPLYKLQFGKKVEYVYDDEALPKALEQLGGK-PSMQRYK 550 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 GLGEMN QLWETT++P+TR+LL+V + DA +AD +F+ Sbjct: 551 GLGEMNPEQLWETTMDPETRTLLQVTMKDAIEADQVFN 588 >gi|325265376|ref|ZP_08132100.1| DNA topoisomerase IV subunit B [Clostridium sp. D5] gi|324029377|gb|EGB90668.1| DNA topoisomerase IV subunit B [Clostridium sp. D5] Length = 640 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 257/640 (40%), Positives = 366/640 (57%), Gaps = 14/640 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++YDADSI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 3 NKNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCTQIH 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS T+ DNGRG+P +HK+ G+SA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VTLEKDGSATIEDNGRGVPVGMHKK-GVSAERIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ +++ REG ++ F GI L V G TGT+V FLP Sbjct: 121 SVVNALSTYMDVQVSREGAVHHDRFERGIPVIELEDGLLPVIGKT-RKTGTKVNFLPDDT 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + ++ RL E ++LN + I DKR P I GI F+ L++ K Sbjct: 180 IFEKTRFRAEEVKSRLHETAYLNPDLTIIFDDKRMESPEHIVYHEPDGILGFIKDLNQKK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L PI +G + I +++A+++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 240 ETLH-EPIYYKGESEGIEVEVALQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 299 NQYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKATGKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D + + + + K ++ A+ +R +A+ K GKLA+C R Sbjct: 359 GDEIVLYFDRNLETLKSVLSCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DATKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + + +Y+ D+++LE Y ++ + + ++ +D + Sbjct: 538 MPPLYKVMPKKGEEEYLYDDKALEKYRRMHDGPFTLQRYKGLGEMDAQQLWETTLDPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + KL++ + E + + V N + A Sbjct: 598 LLKLVEIEDARMASSVTEMLMGTEVPPRRMFIYENAADAE 637 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 50/69 (72%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTL+P+TR L V+I DA A + LMG EV PRR FI E Sbjct: 572 TLQRYKGLGEMDAQQLWETTLDPETRLLKLVEIEDARMASSVTEMLMGTEVPPRRMFIYE 631 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 632 NAADAELDI 640 >gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748] gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC 17748] Length = 633 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 306/585 (52%), Positives = 417/585 (71%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MPEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G I E++F G + L G A TGT V F P ++IF Sbjct: 119 ISVVNALSEWTKVQVAQNGIIQEITFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 FN+DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRVESFHYEGGLSSFIAFLNENKEVVN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V++GL Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG++ FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 478 IGEE-FDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581 Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGEEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR GI++QRYKGLGEMN QLWETT+NP+ R++L+V + D+ +AD +F+ L Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPEHRTILQVSLEDSIEADKIFTVL 609 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632 >gi|293376332|ref|ZP_06622569.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909] gi|292645021|gb|EFF63094.1| DNA topoisomerase IV, B subunit [Turicibacter sanguinis PC909] Length = 644 Score = 565 bits (1455), Expect = e-158, Method: Composition-based stats. Identities = 254/566 (44%), Positives = 374/566 (66%), Gaps = 15/566 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++ +Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNAIDE L GY Sbjct: 1 MSTHL---NYNEDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAIDEVLAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ + S +V D+GRG+PT +H + G EVI T LHAGGKF YK SGGL Sbjct: 57 GDHIKVTIHENNSISVQDSGRGVPTGMH-KSGKPTPEVIFTVLHAGGKFGTGGYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS W+++ IKR+GN+Y F N G L + G + +TGT V+F P Sbjct: 116 HGVGASVVNALSEWVEVTIKRDGNVYRQRFENGGHPVTGLDIIGKSK-ETGTLVSFKPDP 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IFS +++D L RLRE +FL ++I LID R+ + T +Y+ GI++FVSYL+ Sbjct: 175 EIFSTTVYSFDILSERLRESAFLLKGLKIELIDLRNDKE--ETFYYEDGIKSFVSYLNEG 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G I +D A +++ Y EN+L F NN+ KDGGTH +G ++ LTR Sbjct: 233 KDTLH-DVVYFEGESQEIEVDFAFQYSGSYSENILSFVNNVRTKDGGTHETGAKAVLTRI 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y ++ K+ ++++ G D REG +++S+++P+ +F QTK KL + E RS V+ Sbjct: 292 FNDYARRNGLLKEKEKNLEGADIREGLAAIVSVRIPENLLQFEGQTKAKLGTPEARSAVD 351 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L+ + EE+ A ++KK + A+ VR+AAR+AR+ + + +L GKL Sbjct: 352 NVIAEKLTFFFEENGAVATQLIKKAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLT 411 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++P+K+ELFLVEGDSAGGSAK GR+R QAILPLRGK++N E+A+ + + ++EI Sbjct: 412 PAQTKNPQKNELFLVEGDSAGGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEIN 471 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G + F+++ + Y K+IIMTDAD DGAHI+ LLLTFFFR M L+ G +Y Sbjct: 472 TMIYTIGAGVGAN-FELSDVNYDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVY 530 Query: 536 IIKPPLYGITRGKSLQYVKDEESLED 561 I PPLY +++G+ + V + ++ Sbjct: 531 IALPPLYKVSKGQGKKQVVEYAWTDE 556 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 58/259 (22%), Positives = 108/259 (41%), Gaps = 9/259 (3%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + ++ + + +E L +KN ++ ++ Sbjct: 375 KAIKAAQVREAARKAREDARSGKTKKKKETNLSGKLTPAQTKN---PQKNELFLVEGDSA 431 Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + QA++ V N E + ++ ++ + I ++ S N Sbjct: 432 GGSAKLGRNRAFQAILPLRGKVINTEKAKMEDIFKNEEINTMIYTIGAGVGANFELSDVN 491 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 D ++ + F F + + + ++ + + K ++ Sbjct: 492 YDKVIIMTDADTDGAHIQVLLLTFFFRYMRELVEAGKVYIALPPLYKVSKGQGKKQVVEY 551 Query: 720 C---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L ++ + KG +QRYKGLGEMNA QLW+TT+NP+TR+L++V I DA+ AD Sbjct: 552 AWTDEELGSVIAKVGKGYMLQRYKGLGEMNADQLWDTTMNPETRTLIQVSIEDAADADHR 611 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRRE+I++N Sbjct: 612 VTTLMGDKVEPRREWIEQN 630 >gi|331090927|ref|ZP_08339769.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405149|gb|EGG84685.1| hypothetical protein HMPREF9477_00412 [Lachnospiraceae bacterium 2_1_46FAA] Length = 640 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 255/621 (41%), Positives = 370/621 (59%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDADSI IL+GL+AV+ RP MYIG GL+H++YE++DNA+DE L G+ + I Sbjct: 3 KKNTYDADSISILEGLEAVRVRPGMYIGSVS-TKGLNHLVYEIVDNAVDEHLAGFCNRIE 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS TVSDNGRG+P +H++ G+SAA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VTLEKDGSATVSDNGRGVPVGMHQK-GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ ++I R+G ++ + GI L V TGT V FLP Sbjct: 121 SVVNALSAYMDVKISRDGAVHHDHYERGIPTIELVDGLLPVIAKTK-KTGTTVNFLPDDT 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + ++ RL E ++LN ++ I DKR E I GI F++ L++ K Sbjct: 180 IFEKTRFKAEEIKSRLHETAYLNPTLTIVFEDKRGAETERIEYHEPNGILGFIADLNQKK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G D I +++A ++ + +HENVL F NNI +GGTHL+G +S T + Sbjct: 240 ETVH-EPVYFKGEADGIEVEVAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKSTFTMVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 299 NQYAREIGVLKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAGKATSKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND ++ + +++ K ++ A+ +R +A+ K S GKLA+C R Sbjct: 359 NDEITRFFDKNLDTLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R+ QAILP+RGKILNVE+A DK+L++ EI ++I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARNRQFQAILPIRGKILNVEKASIDKVLANAEINSMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G +YI Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +T+ +Y+ D+++LE Y Q + ++ + + ++ ++ + Sbjct: 538 MPPLYKAVTKKGEEEYLYDDKALEKYRRRQKGAYTLQRYKGLGEMDAEQLWDTTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + KLI+ E + Sbjct: 598 MLKLIEIEDARMASGVTEMLM 618 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 ++ G++ + L+ + ++QRYKGLGEM+A QLW+TTLNP+TR L + Sbjct: 544 AVTKKGEEEYLYD-DKALEKYRRRQKGAYTLQRYKGLGEMDAEQLWDTTLNPETRMLKLI 602 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +I DA A + LMG EV PRR FI EN+ + LDI Sbjct: 603 EIEDARMASGVTEMLMGTEVPPRRAFIYENATEAELDI 640 >gi|329116682|ref|ZP_08245399.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020] gi|326907087|gb|EGE54001.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020] Length = 650 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 282/617 (45%), Positives = 408/617 (66%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 NDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IEVYIEEDNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALSS L +R+ + G+I+ F GI+ + L + G + TGT V F P +IF+ Sbjct: 128 GSSVVNALSSQLDVRVFKNGSIHYQEFKRGIVYDDLKIIGET-DLTGTTVHFTPDPEIFT 186 Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F+++ L R++EL+FLN ++IS+ DKR+ + Y+GGI ++V +L+ K Sbjct: 187 ETVEFDFEKLAKRVQELAFLNRGLRISIADKRNGIEQVKDYHYEGGIASYVEFLNEKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 +++ PI G D I++++AM++ GYHENV+ F NNI +GGTH G R+ALTR I Sbjct: 247 IIEHPIFTDGEMDGIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + +D Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSD 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L +L E+P A+ IV K + AS R AA+RAR++TR+K L+I++LPGKLADCS + Sbjct: 367 ALQRFLLENPQVARKIVDKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G + FD+ K RYHK++IMTDADVDGAHIRTLLLT +R M ++ GF+YI +PP+Y Sbjct: 487 TGFGAE-FDVAKARYHKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGFVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + ++ L+ SL E S+ + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGTNQEELLKASL--EKYSVGRSRPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + + ++ A + Sbjct: 604 PEHRLMARVTVDDAAEA 620 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 3/87 (3%) Query: 720 CSLLDTIFS---IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL +GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD + Sbjct: 564 EELLKASLEKYSVGRSRPTVQRYKGLGEMDDHQLWETTMDPEHRLMARVTVDDAAEADKV 623 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 F LMGD VEPRREFI+EN++ S LDI Sbjct: 624 FDMLMGDRVEPRREFIEENAVYSTLDI 650 >gi|22537312|ref|NP_688163.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae 2603V/R] gi|22534182|gb|AAN00036.1|AE014244_13 DNA topoisomerase IV, B subunit [Streptococcus agalactiae 2603V/R] Length = 653 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 263/641 (41%), Positives = 391/641 (60%), Gaps = 16/641 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I V Sbjct: 13 TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 72 INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 130 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALSSWL++ I R+G IY F N G L G+A +GT V+F+P +FS Sbjct: 131 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 190 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ K+ L Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 250 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y Sbjct: 251 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 309 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +V+ V++ Sbjct: 310 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 369 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L+ +L E+ A +++K + A R+AAR+ARD +K D L GKL ++ Sbjct: 370 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++EI T+I + Sbjct: 430 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 490 GAGVG-PDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 548 Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595 Y +++GK + + + + + L + + G ++ + L + Sbjct: 549 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 608 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 I I+D + + + + +L Sbjct: 609 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 649 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 523 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 582 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 583 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 642 >gi|21904202|gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS315] Length = 620 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 266/595 (44%), Positives = 379/595 (63%), Gaps = 6/595 (1%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIG T E GLHH+++E++DN+IDE+L G+A I V + D S TV D+GRGIP Sbjct: 1 MRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ + G A E + T LHAGGKF SYKVSGGLHGVG SVVNALS+ L +R+ + G I Sbjct: 60 DIQVKTGRPAVETVFTVLHAGGKFGGGSYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQI 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204 + F G + L V + TGT V F P +IF F+Y L R++EL+FLN Sbjct: 120 HYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++IS+ DKRS +E Y+GGI ++V +L+ K + ++PI G + I++++AM+ Sbjct: 179 GLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVAMQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 + Y E V+ F NNI +GGTH G R+ALTR I Y +K+ K+++ ++ G+D RE Sbjct: 239 YTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+V+S+K P+P+F QTK KL +SEV + ++ +L E+P A+ IV+K + Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGIL 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR++TR+K L+I++LPGKLADCS D ++ELF+VEGDSAGGSAK GR+ Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRN 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G D FD++K RY K++IMT Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKARYQKLVIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ G ++ + D Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYI--QPGIDQED 535 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 + E SK + + +DD + + + ++ A + Sbjct: 536 QLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 590 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 545 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 604 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 605 RRDFIEENAVYSTLDI 620 >gi|194246593|ref|YP_002004232.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali] gi|193806950|emb|CAP18382.1| DNA gyrase, beta subunit [Candidatus Phytoplasma mali] Length = 633 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 267/586 (45%), Positives = 385/586 (65%), Gaps = 7/586 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y+A+SIQ+L+GL+AV+ RP MYIG T+ E GL+H+++E++DNAIDESLEGYA+ I Sbjct: 3 KKTKIYNAESIQVLEGLEAVRIRPGMYIGSTN-EKGLNHLVWEIVDNAIDESLEGYANEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 + + + V+DNGRGIP D+H + + E I+T LHAGGKF+ SYK+SGGLHGVG Sbjct: 62 ILEVLPENIIRVTDNGRGIPVDIHPKTNKTVVETILTTLHAGGKFDNSSYKISGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSSW + I +G IY + G L + G+ N GT +TFLP ++IF Sbjct: 122 ASVVNALSSWFLVEIHLQGKIYFQKYEKGKPVTKLEIKGNT-NKKGTVITFLPDNEIFKE 180 Query: 185 -QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++N++ L+ R+++L+FLN +++ +IDKR + +YK G++ ++ YL+++K L Sbjct: 181 TTNYNFEILKIRMQQLAFLNKGIKLIIIDKRKDIEEKFEFYYKEGLKEYIKYLNQNKTSL 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + + + ++ ++ + Y+ N+ F NNIP DGGTH G + AL R + Y Sbjct: 241 NKE-FYQEKFFEKMFFEIVFQYTEVYNNNIYSFVNNIPTHDGGTHEEGFKMALNRILNKY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 V+ K + I +D EG T V+S+K P+P F SQTK K ++SEVR ++ F + Sbjct: 300 VKDKNMLK-KNINFISEDTLEGLTVVISLKHPNPSFESQTKTKFLNSEVRQIISKFFGEE 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L +L E+P EAK I++K L +S R A++AR+ TRRK L+ KLADC ++P+ Sbjct: 359 LEKYLLENPQEAKKIIEKCLLSSKARIDAKKAREATRRKSPLETLGFASKLADCYNKNPQ 418 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +SEL++VEGDSAGGSAKQGR + QAILPL+GK+LNVE+AR +K+LS++EI +LI A+GT Sbjct: 419 ESELYIVEGDSAGGSAKQGRDSKYQAILPLKGKVLNVEKARLEKILSNKEIISLIQAVGT 478 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G G+D F+I+K+RYH+IIIMTDADVDGAHIRTLLLTFFFR + LI G++Y K PLY Sbjct: 479 GFGKD-FNIDKVRYHRIIIMTDADVDGAHIRTLLLTFFFRNLKPLIEKGYIYFAKSPLYK 537 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I GK + Y +E+ L+ L S G ++ L Sbjct: 538 IQYGKKITYAYEEQELKKILSRISGKF-YIQRYKGLGEMNPEQLWE 582 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 8/119 (6%) Query: 691 RIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQRYKGLGE 744 R IE+ Y+ + L I G KI L I S G+ +QRYKGLGE Sbjct: 517 RNLKPLIEKGYIYFAKSPLYKIQYGKKITYAYEEQELKKILSRISGK--FYIQRYKGLGE 574 Query: 745 MNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 MN QLWETT+NP+TR+LL+V + ++D +F+ LMG+EV R++FIQ+N++ + LD+ Sbjct: 575 MNPEQLWETTMNPETRTLLQVNSENDLESDQVFNMLMGEEVSVRKKFIQDNAIYADLDV 633 >gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6] Length = 633 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 308/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MAEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G I E+ F G + L G A TGT V F P S+IF Sbjct: 119 ISVVNALSEWTKVQVSQNGIIQEIDFSRGHKTSELHEIGKAE-GTGTTVIFKPDSEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 FN+DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRIESFHYEGGLSSFITFLNENKEVVN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V++GL Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR GI++QRYKGLGEMN QLWETT+NP+ R++L+V + D+ +AD +F+ L Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632 >gi|229134401|ref|ZP_04263214.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196] gi|229168314|ref|ZP_04296039.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621] gi|228615140|gb|EEK72240.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH621] gi|228649022|gb|EEL05044.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST196] Length = 654 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 399/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G+IYE F N G L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG S++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L D ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736 F + I + ++ + + K ++ L D +G KG + Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVG-KGYML 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 573 QRYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|239628764|ref|ZP_04671795.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518910|gb|EEQ58776.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 736 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 276/592 (46%), Positives = 372/592 (62%), Gaps = 11/592 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A IQIL+GL+AV+KRPSMYIG+T + GLHHM+YE++DNA+DE+L GY I V Sbjct: 85 SPDYGAAQIQILEGLEAVRKRPSMYIGNTSAQ-GLHHMVYEIVDNAVDEALAGYCTEIEV 143 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN D S TV DNGRGIP + + G+SA +V+ T LHAGGKF+ SYKVSGGLHGVG S Sbjct: 144 YLNPDNSVTVHDNGRGIPAGIQSKTGLSAIQVVFTVLHAGGKFDNSSYKVSGGLHGVGAS 203 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VVNALSS LK+++ ++G Y S+ GI P+ V G+ + GT VTF P +IF Sbjct: 204 VVNALSSRLKVKVDQDGYSYVQSYERGIPLGPVRVQGTCSSQEHGTTVTFWPDGEIFKDC 263 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDK-------RSPEPREITMFYKGGIEAFVSYLDR 238 F+ +TL+ ++E +FL S + I+L D P+ Y+ G++ FV +++ Sbjct: 264 HFHPETLRQHMQETAFLMSGLTITLYDHSESRDQDNHPDAPVWRFCYQDGLKDFVKFING 323 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + L Q + Q D + + A+ N G+ E + F NNI +GGTH++G R ALTR Sbjct: 324 PEPTLYQDILYGQSGTDEVLAEFALIHNTGFDEKLRSFANNISTPEGGTHVTGFRQALTR 383 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y K K+ S+ ++ EG T+V+S+++ +P+F QTK++L SS R V++ Sbjct: 384 AINDYARKQGMLKESDPSISREELSEGMTAVISVRLKEPQFEGQTKQRLGSSSARPVMDH 443 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V L+ +LE++PL AK I+ K + A R AAR AR++ RRK L SLPGKLADCS Sbjct: 444 LVYTKLTLFLEQNPLAAKAIINKAVLAKKARAAARSAREMARRKTALSGLSLPGKLADCS 503 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PK ELF+VEGDSAGGSAK R RENQA+LPLRGKILNVE+ DK+ ++ EI +I Sbjct: 504 SRNPKDCELFIVEGDSAGGSAKMARCRENQAVLPLRGKILNVEKTTLDKVCANAEIKAMI 563 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +A GTGI D F ++ LRYHKII+MTDADVDGAHI TLLLTF FR MP LI G +Y+ + Sbjct: 564 SAFGTGI-MDGFSLDGLRYHKIILMTDADVDGAHITTLLLTFLFRFMPRLIEAGHVYLAQ 622 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPL+ + +GK L Y + L L + G + L Sbjct: 623 PPLFRVEKGKKLWYAYSDSELSQILEDIGRDGNYKIQRYKGLGEMDAKQLWE 674 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 13/114 (11%) Query: 703 TILSLICNGDKI-KITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTR 760 L + G K+ L + IGR G +QRYKGLGEM+A QLWETT++P R Sbjct: 623 PPLFRVEKGKKLWYAYSDSELSQILEDIGRDGNYKIQRYKGLGEMDAKQLWETTMDPSRR 682 Query: 761 SLLRVKITD----------ASQADDLFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +LLRV D S+ +F LMGD+VEPR+ +I E++ + LD+ Sbjct: 683 TLLRVGAADSHDTFGQDSSESETSRIFRILMGDDVEPRKNYILEHAQYTTMLDV 736 >gi|260101874|ref|ZP_05752111.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus helveticus DSM 20075] gi|260084302|gb|EEW68422.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus helveticus DSM 20075] gi|328468764|gb|EGF39735.1| DNA gyrase subunit B [Lactobacillus helveticus MTCC 5463] Length = 654 Score = 564 bits (1454), Expect = e-158, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 400/626 (63%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I +T+N DGS TV D+GRGIP D+ K+ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLE 179 Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 GT V F P DIF F+ L++R+REL+FLN ++++ DKR Y+ Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+ AR++TR+K L+ Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKHAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + + G + Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 125/369 (33%), Gaps = 35/369 (9%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 HAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734 + I + L + G IK + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIEKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+ Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQK 644 Query: 795 NSLPS-ALD 802 N+ LD Sbjct: 645 NAKYVENLD 653 >gi|25026562|ref|NP_736616.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314] gi|23491841|dbj|BAC16816.1| putative DNA gyrase subunit B [Corynebacterium efficiens YS-314] Length = 687 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 283/692 (40%), Positives = 398/692 (57%), Gaps = 54/692 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+EV+DN++DE++ GY Sbjct: 1 MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEVVDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + VTL DG V DNGRGIP ++H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 58 ADRVDVTLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IK++G + +F N I L V G+ TGT + F P ++ Sbjct: 117 HGVGISVVNALSTRVEAHIKKDGKHWYQNFNNSIP-EDL-VEGANARGTGTSIRFWPDAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217 IF DF++DT+ RL+E++FLN + ++L D R+ + Sbjct: 175 IFETTDFDFDTISRRLQEMAFLNKGLTMTLTDNRASDEELELEALAEQGDTAVELSLDQI 234 Query: 218 -----------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSR 254 ++ Y G+E +V++L+R K P+ S + + Sbjct: 235 DADGETQLVDAEVTDAPKKPKKREKKKIFHYPNGLEDYVNHLNRTKTPIHPSIVSFEAKA 294 Query: 255 DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK 314 +++AM+WN Y E+V F N I +GGTH G RSALT + Y + K+ + Sbjct: 295 AEHEVEIAMQWNSSYKESVHTFANTINTFEGGTHEEGFRSALTSLMNRYAREHKLLKEKE 354 Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 ++ GDDCREG ++V+S+++ +P+F QTK KL ++E++S V+ N+ + WLE +P E Sbjct: 355 ANLTGDDCREGLSAVISVRVSEPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAE 414 Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434 AK+I+ K + ++ R AAR+ARDL RRK D+ LPGKLADC +DP+KSEL++VEGDS Sbjct: 415 AKVIINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDS 474 Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494 AGGSAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINK Sbjct: 475 AGGSAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNSEVQAIITALGTGI-HDEFDINK 533 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYV 553 LRYHKI++M DADVDG HI TLLLT FR MP LI G +Y+ +PPLY + + + Sbjct: 534 LRYHKIVLMADADVDGQHIATLLLTLLFRFMPDLIAEGHVYLAQPPLYKLKWQRGEPGFA 593 Query: 554 KDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFI 613 +E + L + D N + D Sbjct: 594 YSDEERDQQLEEGLAAGRKINKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRVDLADA 653 Query: 614 EQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++A D S ++ A + F+ Sbjct: 654 QRADELFSILMGDDVVARRSFITRNAKDVRFL 685 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMN ++LWETT++P R L RV + DA +AD+LFS Sbjct: 603 LEEGLAAGRK-INKDDGIQRYKGLGEMNPNELWETTMDPSVRILRRVDLADAQRADELFS 661 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI N+ LD+ Sbjct: 662 ILMGDDVVARRSFITRNAKDVRFLDV 687 >gi|319947116|ref|ZP_08021350.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis ATCC 700641] gi|319747164|gb|EFV99423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus australis ATCC 700641] Length = 649 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 272/649 (41%), Positives = 391/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I VT+N DGS +V+D GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGSQIDVTINKDGSLSVADQGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L GSA TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKIGSAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ R++E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DATIFSTTDFKFNTIAERIKESAFLLKDVTLTLTDLRKEEDNHVAFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L G + +++A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 239 EDKETLTPVL-YFNGESEGFQVEVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEAHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A +L ++E Sbjct: 418 LTPAQSKNAAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FTIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED ++ + + + Sbjct: 537 VYIAMPPLYKMSKGKGKKEEVAYAWTDSELEDLRRTFGRGATLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 ++ + I I D + + + + + +L Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 10/260 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 381 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAAKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E ++ ++ + I + N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKANMSDILKNEEINTMIYTIGAGVGADFTIEDANY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717 D ++ + + + +F +Y R G K ++ Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEAGRVYIAMPPLYKMSKGKGKKEEVA 558 Query: 718 G--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 S L+ + +G ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 YAWTDSELEDLRRTFGRGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAER 618 Query: 776 LFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638 >gi|312864869|ref|ZP_07725100.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415] gi|311099996|gb|EFQ58209.1| DNA topoisomerase IV, B subunit [Streptococcus downei F0415] Length = 647 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 275/650 (42%), Positives = 398/650 (61%), Gaps = 21/650 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MTKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V L+ DGS +V+D+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIEVVLHQDGSVSVTDSGRGMPTGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A +GT+VTF P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTELEKIGTAPKSKSGTKVTFKP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V + L D+R+ E + Y+ G++ FV YL+ Sbjct: 179 DDSIFSTTDFKFNTISERLKESAFLLKEVTLVLKDERTEEE--VEFHYENGVQDFVHYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I +G + +AM++NDG+ +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTP-VIYFEGEDQGFQVQVAMQYNDGFSDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 296 KAMNDYARKTGLLKDKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGLVSDQLTFFLMENGELASSLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 416 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMPDILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F ++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-PDFSLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LED + + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEDLR-QKFGRGALLQRYKGLGEMNADQLWE 593 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D+ I I+D + + + + + +L Sbjct: 594 TTMDPDNRTLIRVTIEDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 643 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + +G Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEQVEYAWTDGELEDLRQKFGRGAL 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT++PD R+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMDPDNRTLIRVTIEDLARAERRVSVLMGDKAAPRRQWIEDN 636 >gi|116491823|ref|YP_803558.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745] gi|116101973|gb|ABJ67116.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745] Length = 648 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 287/598 (47%), Positives = 395/598 (66%), Gaps = 11/598 (1%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADEKETKAELAREYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I V + D S TV+DNGRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFADKIDVIVEKDNSITVTDNGRGIPVDIQKKTGKPALETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEV 173 VSGGLHGVG SVVNALS+ L R+ ++G IY + F G + P+ G + GT V Sbjct: 120 VSGGLHGVGASVVNALSTELDARVMKDGKIYYIDFALGKVKTPMKTIGDTEHPDDHGTIV 179 Query: 174 TFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 F+P DIF ++ + L+ R+REL+FLN ++I+L D R +P E Y+GGI + Sbjct: 180 HFVPDPDIFQETTTYDINILKTRIRELAFLNKGLRITLKDMRPEKPTEDDFLYEGGIRHY 239 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 V YL+ K+ + PI ++G I++++AM++ +GY +L FTNNI +GGTH G Sbjct: 240 VEYLNEGKEVIFPEPIYVEGVTKGITVEVAMQYIEGYQSKLLTFTNNIHTYEGGTHEEGF 299 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALTR I Y + + K++ + GDD REG T+V+S+K PDP+F QTK KL +S+ Sbjct: 300 KRALTRVINDYAKNNNILKENDDKLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDA 359 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R+ V + + +L E+P A+ IV K + A+ R AA+RAR++TR+K L++ +LPG Sbjct: 360 RTAVNEVFAETFNKFLLENPKVARQIVDKGILAAKARVAAKRAREVTRKKSGLELNNLPG 419 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLAD + +DP SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A D++L+++ Sbjct: 420 KLADNTSKDPSISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKATLDRVLANE 479 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI +L TALGTG G+D FD++K YHK+IIMTDADVDGAHIRTLLLT F+R M +I G Sbjct: 480 EIRSLFTALGTGFGED-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDAG 538 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 F+YI +PPLY + +GK +QY+ +E LE L S S + + G + L Sbjct: 539 FVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQLSPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 85/191 (44%), Gaps = 14/191 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E V ++ + + + + S N L+ V + + Sbjct: 464 ILNVEKATLDRVLANEEIRSLFTALGTGFGEDFDVSKANYHKLIIMTDADVDGAHI--RT 521 Query: 681 SIFSFGSKYKRIF-SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS---- 735 + + +Y R L + G I+ L+T+ +S Sbjct: 522 LLLTLFYRYMRPMIDAGFVYIAQPPLYQVRQGKMIQYIDSDEELETVLGQ----LSPSPK 577 Query: 736 --MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +QRYKGLGEM+A QLWETT+NP+ R LLRV DA A F LMGD+VEPRR+FI+ Sbjct: 578 PVIQRYKGLGEMDAEQLWETTMNPENRRLLRVSAEDADAASGDFEMLMGDKVEPRRKFIE 637 Query: 794 ENSLPS-ALDI 803 EN++ LDI Sbjct: 638 ENAVFVKNLDI 648 >gi|328957567|ref|YP_004374953.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4] gi|328673891|gb|AEB29937.1| DNA topoisomerase 4 subunit B [Carnobacterium sp. 17-4] Length = 675 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 254/601 (42%), Positives = 367/601 (61%), Gaps = 16/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + N Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 10 MPKEL-NKEYNDDSIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEALSGF 67 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL+ D S +V DNGRG+P +H GI +VI T LHAGGKF Q YK SGGL Sbjct: 68 GTEIDVTLHKDNSISVKDNGRGMPIGMHSS-GIPTVQVIFTVLHAGGKFGQGGYKTSGGL 126 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSF-INGILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I REG Y+ F G L + GT V F P Sbjct: 127 HGVGASVVNALSEWLTVTIIREGVHYQQKFVEGGKAKGSLKKIKTNNEKNGTIVHFKPDP 186 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ + +YD L RLRE +FL ++I+L D+R+ + +Y+ GI+ FVSYL+ Sbjct: 187 TIFTTTNLSYDVLAERLRESAFLLKGLRITLTDERNEQS--EVFYYEEGIKEFVSYLNED 244 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L +G + I ++ + ++NDGY E +L F NN+ KDGGTH +G+++A+T+ Sbjct: 245 KDNLTPVA-YFEGENNEIEVEFSFQYNDGYSETILSFVNNVRTKDGGTHEAGMKTAITKT 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ ++++ G D REG +V+SI++P+ +F QTK KL + + RS VE Sbjct: 304 FNEYARKVNLLKEKEKNLEGTDFREGLAAVISIRIPENLLQFEGQTKSKLGTPQARSAVE 363 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V+D L+ +L E+ ++ +++K L A RDAAR+AR+ +K + L GKL Sbjct: 364 TVVSDQLNFYLIENGDLSQQLIRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLT 423 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ ++ ++EI Sbjct: 424 PAQSKNAKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKLQDVMKNEEIS 483 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G FDI Y KIIIMTDAD DGAHI+TLLLTFF+R M L G +Y Sbjct: 484 TMIYTIGAGVG-PEFDIADCNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVY 542 Query: 536 IIKPPLYG----ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 + PPLY I + + + Y ++ L + + ++ + + + + Sbjct: 543 LALPPLYKLSRGIGKKEKIAYAWTDDELVQVTKDFGKNYILQRYKGLGEMNADQLWDTTM 602 Query: 592 D 592 + Sbjct: 603 N 603 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + +D + S + ++ ++ Sbjct: 385 IRKALKAREARDAARKAREESRNGKKRKKNDTLLSGKLTPAQSKNAKRNELYLVEGDSAG 444 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +++ + I + + N Sbjct: 445 GSAKQGRDRKFQAILPLRGKVINTEKAKLQDVMKNEEISTMIYTIGAGVGPEFDIADCNY 504 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + + ++ + L G K KI Sbjct: 505 DKIIIMTDADTDGAHIQTLLLTFFYRYMKPLFEAGKVYLALPPLYKLSRGIGKKEKIAYA 564 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ G K +QRYKGLGEMNA QLW+TT+NP+TR+L+RVKI DA+QA+ Sbjct: 565 WTDDELVQVTKDFG-KNYILQRYKGLGEMNADQLWDTTMNPETRTLIRVKIDDAAQAEKR 623 Query: 777 FSRLMGDEVEPRREFIQEN 795 S LMGD+VEPRR++I+ + Sbjct: 624 VSVLMGDKVEPRRKWIESH 642 >gi|322388186|ref|ZP_08061790.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus infantis ATCC 700779] gi|321140858|gb|EFX36359.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus infantis ATCC 700779] Length = 648 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 281/626 (44%), Positives = 408/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+++I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEDIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIEVFIEPDDSITVIDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L +R+ + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVRVHKNGKIHYQEYRRGHVVADLEVIGDT-DKTGTIVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G ++I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMEDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLLENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIRLQEAL--ARYSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMNPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 546 KVGSEIKEYIQPGADQEIR-LQEALAR-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|145294048|ref|YP_001136869.1| DNA gyrase subunit B [Corynebacterium glutamicum R] gi|140843968|dbj|BAF52967.1| hypothetical protein [Corynebacterium glutamicum R] Length = 684 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 279/689 (40%), Positives = 396/689 (57%), Gaps = 51/689 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+EV+DN++DE++ G+ Sbjct: 1 MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V D+GRGIP D+H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 58 ATKVEVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IK G + +F + D + G TGT + F P ++ Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217 IF +F+++T+ RL+E++FLN + I+L D R+ + Sbjct: 175 IFETTEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEI 234 Query: 218 --------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257 ++ Y G+E +V YL+R K + S + + D+ Sbjct: 235 DNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVQYLNRSKTNIHPSIVSFEAKGDDH 294 Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317 +++AM+WN Y E+V F N I ++GGTH G RSALT + Y + K+ + ++ Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354 Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377 GDDCREG ++V+S+++ DP+F QTK KL ++E++S V+ N+ + WLE +P EAK+ Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414 Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437 I+ K + ++ R AAR+ARDL RRK D+ LPGKLADC +DP+KSEL++VEGDSAGG Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474 Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497 SAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINKLRY Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRY 533 Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDE 556 HKI++M DADVDG HI TLLLT FR MP L+ G +Y+ +PPLY + + + + Sbjct: 534 HKIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSD 593 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 E ++ L + D N + D T ++A Sbjct: 594 EERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRA 653 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFI 645 D S ++ A + F+ Sbjct: 654 DELFSILMGDDVVARRSFITRNAKDVRFL 682 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMNAS+LWETT++P R L RV ITDA +AD+LFS Sbjct: 600 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 658 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI N+ LDI Sbjct: 659 ILMGDDVVARRSFITRNAKDVRFLDI 684 >gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102] gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102] Length = 645 Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats. Identities = 295/646 (45%), Positives = 407/646 (63%), Gaps = 15/646 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G+ I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIP D H G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINADGSVTVTDDGRGIPVDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS +++ + R+ ++ + GI L TGT VTF P + IF+ Sbjct: 121 VVNALSEVVEVTVWRDKKVHLQRYERGIPVTELQTKPYKEARTGTSVTFKPDTQIFTTSI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+I+ D R S P+ + YKGGI+ +++Y++R K Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYNYKGGIKEYIAYMNREK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I +QG R+N+ ++++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEIIYVQGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTVDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNAIARKRNKIKENEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPAIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + E+ +LIT Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG G+ D FD N+LRYH+I+IMTDADVDGAHIRTLLLTFF+R SLI GF+YI P Sbjct: 481 ALGLGVKGDEFDSNQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRSLIEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PL+ + RG++ +Y + + + G + L + ++ Sbjct: 541 PLFKVERGRNHEYCYSDREKNQAIAKFPANANYTIQRFKGLGEMMPQQLWDT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 + + E I + + ++LNF Sbjct: 596 PETRKMKQVEIEDAAEADRIFTILMGDRV-APRREFIETYGSKLNF 640 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 18/162 (11%) Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYL----TILS 706 +++ + RI + ++G+ I + F +Y+R IE+ ++ L Sbjct: 489 DEFDSNQLRYHRIV--IMTDADVDGAHIRTLLLTFFYRYQRSL---IEQGFIYIACPPLF 543 Query: 707 LICNGDKIK-ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLR 764 + G + I ++QR+KGLGEM QLW+TT+NP+TR + + Sbjct: 544 KVERGRNHEYCYSDREKNQAIAKFPANANYTIQRFKGLGEMMPQQLWDTTMNPETRKMKQ 603 Query: 765 VKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 V+I DA++AD +F+ LMGD V PRREFI+ LDI Sbjct: 604 VEIEDAAEADRIFTILMGDRVAPRREFIETYGSKLNFTDLDI 645 >gi|322389902|ref|ZP_08063442.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 903] gi|321143338|gb|EFX38776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus parasanguinis ATCC 903] Length = 649 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 284/657 (43%), Positives = 421/657 (64%), Gaps = 17/657 (2%) Query: 1 MSDNIQNSS----YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+++ Q + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+ Sbjct: 1 MTEDKQQENQAQEYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKV Sbjct: 60 LAGFASHIEVFIEADNSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS+ L +R+ + G+I+ + G + + L + G + TGT V F+ Sbjct: 120 SGGLHGVGSSVVNALSTSLDVRVYKNGSIHYQEYRRGHVVDDLKIIGET-DRTGTTVHFI 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +IF+ ++++ L R++EL+FLN ++ISL DKR +E Y+GGI ++V Y Sbjct: 179 PDPEIFTETTEYDFEKLNKRIQELAFLNRGLRISLTDKREGLEQEKHYHYEGGISSYVEY 238 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ +K + ++PI G D+I++++AM++ GYHE V+ F NNI +GGTH G R+A Sbjct: 239 INENKDVIFETPIYTDGEMDDITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRTA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 LTRVINDYAKKNKLLKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKI 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLA Sbjct: 359 TNRLFSDAFSDFLLENPQIAKKIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS +P+++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 DCSSNNPEETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIR 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +L TA+GTG G + FD+ K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++Y Sbjct: 479 SLFTAMGTGFGAE-FDVTKARYQKLVIMTDADVDGAHIRTLLLTLIYRYMKPVLEAGYVY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PP+YG+ G ++ + + + + E SK I + +DD Sbjct: 538 IAQPPIYGVKVGSEIKEYI--QPGANQEAELAAALERYSEGRSKPTIQRYKGLGEMDDHQ 595 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + + ++ A + ++ R FI E +E S Sbjct: 596 LWETTMNPEHRLMARVSVDDAAEADKIFDMLM-------GDRVEPRREFIEENAEYS 645 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G + + L+ +S GR ++QRYKGLGEM+ QLWETT+NP+ Sbjct: 547 KVGSEIKEYIQPGANQEAE-LAAALER-YSEGRSKPTIQRYKGLGEMDDHQLWETTMNPE 604 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN+ S LD+ Sbjct: 605 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAEYSTLDV 649 >gi|19551255|ref|NP_599257.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032] gi|62388898|ref|YP_224300.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032] gi|41324231|emb|CAF18571.1| DNA GYRASE SUBUNIT B [Corynebacterium glutamicum ATCC 13032] Length = 684 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 279/689 (40%), Positives = 396/689 (57%), Gaps = 51/689 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+EV+DN++DE++ G+ Sbjct: 1 MANT--EHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V D+GRGIP D+H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 58 ATKVEVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IK G + +F + D + G TGT + F P ++ Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE----------------------- 217 IF +F+++T+ RL+E++FLN + I+L D R+ + Sbjct: 175 IFETTEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEI 234 Query: 218 --------------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNI 257 ++ Y G+E +V YL+R K + S + + D+ Sbjct: 235 DNETELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDH 294 Query: 258 SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSV 317 +++AM+WN Y E+V F N I ++GGTH G RSALT + Y + K+ + ++ Sbjct: 295 EVEVAMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANL 354 Query: 318 IGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377 GDDCREG ++V+S+++ DP+F QTK KL ++E++S V+ N+ + WLE +P EAK+ Sbjct: 355 TGDDCREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKV 414 Query: 378 IVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGG 437 I+ K + ++ R AAR+ARDL RRK D+ LPGKLADC +DP+KSEL++VEGDSAGG Sbjct: 415 IINKAVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGG 474 Query: 438 SAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRY 497 SAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINKLRY Sbjct: 475 SAKSGRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRY 533 Query: 498 HKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDE 556 HKI++M DADVDG HI TLLLT FR MP L+ G +Y+ +PPLY + + + + Sbjct: 534 HKIVLMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSD 593 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 E ++ L + D N + D T ++A Sbjct: 594 EERDEQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRA 653 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFI 645 D S ++ A + F+ Sbjct: 654 DELFSILMGDDVVARRSFITRNAKDVRFL 682 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMNAS+LWETT++P R L RV ITDA +AD+LFS Sbjct: 600 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 658 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI N+ LDI Sbjct: 659 ILMGDDVVARRSFITRNAKDVRFLDI 684 >gi|319745151|gb|EFV97474.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus agalactiae ATCC 13813] Length = 653 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 262/641 (40%), Positives = 391/641 (60%), Gaps = 16/641 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I V Sbjct: 13 TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 71 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 72 INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 130 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALSSWL++ I R+G IY F N G L G+A +GT V+F+P +FS Sbjct: 131 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 190 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ K+ L Sbjct: 191 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 250 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y Sbjct: 251 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 309 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +V+ V++ Sbjct: 310 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 369 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L+ +L E+ A +++K + A R+AAR+ARD +K D L GKL ++ Sbjct: 370 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 429 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++EI T+I + Sbjct: 430 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 489 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 490 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 548 Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595 Y +++GK + + + + + L + + G ++ + L + Sbjct: 549 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 608 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 I I+D + + + + +L Sbjct: 609 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 649 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 523 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 582 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 583 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 642 >gi|298246161|ref|ZP_06969967.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963] gi|297553642|gb|EFH87507.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963] Length = 668 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 280/593 (47%), Positives = 390/593 (65%), Gaps = 11/593 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N N+ Y +IQIL+GL+AV+ RP MYIG TD + GLHH+I EV+DN++DE + GYA Sbjct: 31 TQNHGNNGYSGQNIQILEGLEAVRVRPGMYIGATD-QRGLHHLIQEVVDNSVDEVMAGYA 89 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ DGS T+ DNGRGIP + H + G+S EV+MT LHAGGKF Y++S GL Sbjct: 90 DTIQVTIHADGSVTIEDNGRGIPVEEHHQRPGMSTLEVVMTVLHAGGKFGGGGYQISSGL 149 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS W ++ ++R+G +Y + G L G + TGT +F+P Sbjct: 150 HGVGVSVVNALSEWCQVDVRRDGKVYRQRYEKGTPVTKLAAVG-SFEGTGTRTSFMPDLS 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 + +D+N+D L R RE+++LN + I + D+RS RE T +++GG+ +FV YL++++ Sbjct: 209 VMETRDYNFDMLAQRFREMAYLNRGMTICIRDERSD--REATFYFEGGLVSFVRYLNKNR 266 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L P D + +D+A+++ND + F N I DGG H++G RSALTR + Sbjct: 267 NTLQARPASASREIDKVKVDIALQYNDSWSTTEFSFANGINTVDGGMHITGFRSALTRSL 326 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K+ ++ GDD R+G V+S+K+P+P+F +QTK KL ++E+R +VE+ Sbjct: 327 NDYARKTGLLKEKDPNLTGDDVRQGLAVVVSVKIPNPQFEAQTKSKLNNAEIRPIVENIT 386 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D L+ +LEE P EAK I+ K L ++ R+AAR ARDL +RK VL +LPGKLADCSER Sbjct: 387 ADMLNRYLEETPSEAKAIISKCLTSAKAREAARAARDLVQRKNVL-DTTLPGKLADCSER 445 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + EL+LVEGDSAGGSAKQGR R QAILPLRGKILNVER DK+L ++E+ +ITA Sbjct: 446 RADRCELYLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERVTLDKILHNEEVKNIITA 505 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G GIG+ F++++LRY +++IM DADVDGAHIRTLLLTFF+R MP LI G LYI +PP Sbjct: 506 VGVGIGEQ-FNLSRLRYGRVVIMCDADVDGAHIRTLLLTFFYRYMPELIGGGHLYIAQPP 564 Query: 541 LYGITRGKSLQYVKDEESLE----DYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + GK + +V EE + +Y + E G ++ L Sbjct: 565 LYHVKFGKQVHFVYTEEERDALINEYKATHNGKEPEVGRYKGLGEMNPETLWE 617 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 8/202 (3%) Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKR 666 H + + + + N E + ++ N + + + ++ S +V Sbjct: 470 RHFQAIL--PLRGKILNVERVTLDKILHNEEVKNIITAVGVGIGEQFNLSRLRYGRVVIM 527 Query: 667 IARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI 726 V + F + + I + L + G ++ D + Sbjct: 528 CDADVDGAHIRTLLLTFFYRYMPELIGGGHLY-IAQPPLYHVKFGKQVHFVYTEEERDAL 586 Query: 727 FSIGR-----KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + + K + RYKGLGEMN LWETT++P+ R++L+V + +A +AD +FS LM Sbjct: 587 INEYKATHNGKEPEVGRYKGLGEMNPETLWETTMDPERRTILKVSVDEAVEADKVFSMLM 646 Query: 782 GDEVEPRREFIQENSLPSALDI 803 GDEV PRR FI+ ++ + LDI Sbjct: 647 GDEVAPRRRFIESHARNANLDI 668 >gi|168484465|ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00] gi|73916352|gb|AAZ93044.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|172042299|gb|EDT50345.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00] gi|332203962|gb|EGJ18029.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47368] Length = 648 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|108796987|ref|YP_637184.1| DNA gyrase subunit B [Mycobacterium sp. MCS] gi|119866071|ref|YP_936023.1| DNA gyrase subunit B [Mycobacterium sp. KMS] gi|126432619|ref|YP_001068310.1| DNA gyrase subunit B [Mycobacterium sp. JLS] gi|108767406|gb|ABG06128.1| DNA gyrase subunit B [Mycobacterium sp. MCS] gi|119692160|gb|ABL89233.1| DNA gyrase subunit B [Mycobacterium sp. KMS] gi|126232419|gb|ABN95819.1| DNA gyrase subunit B [Mycobacterium sp. JLS] Length = 675 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 271/678 (39%), Positives = 382/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+++EV+DNA+DE++ Sbjct: 1 MAAQKKNAPAEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V + +G V+D+GRGIP +H GI +V+MT LHAGGKF + +Y+VSG Sbjct: 60 GFATKVEVRILENGGVQVTDDGRGIPVAMHS-TGIPTVDVVMTVLHAGGKFEEGAYQVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ L+ I+ +G + ++ + L G TGT + F Sbjct: 119 GLHGVGVSVVNALSTRLEADIRTDGYEWFQTYDRSVP-GTLKQ-GEKTKKTGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 DIF ++++T+ RL+E++FLN + I L D+R Sbjct: 177 PDIFETTSYDFETIARRLQEMAFLNKGLTIELTDERVTAEEVVDDVVSDHAEAPKSAEEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ FV +++R K P+ S I G + +++AM+WN G Sbjct: 237 SAEAAKPQKVKHRVFHYPGGLVDFVKHINRTKTPIQPSVIDFDGKGEGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRTALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ P+F QTK KL ++EV+S V+ N+ LS W E +P EAK +V K + ++ Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLSHWFEANPAEAKTVVNKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RLAARKARELVRRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLINQS 567 DG HI TLLLT FR M LI NG +++ +PPLY + +S ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLIENGHVFLAQPPLYKLKWQRSTPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKRINADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G++ I+ +QRYKGLGEM+A +LWETT++P R L ++ + DA+ AD+LF Sbjct: 590 LLEAGRAAGKR-INADDGIQRYKGLGEMDAKELWETTMDPSVRVLRQITLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|77408988|ref|ZP_00785709.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1] gi|77172411|gb|EAO75559.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae COH1] Length = 642 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 262/641 (40%), Positives = 391/641 (60%), Gaps = 16/641 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I V Sbjct: 2 TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 61 INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALSSWL++ I R+G IY F N G L G+A +GT V+F+P +FS Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ K+ L Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +V+ V++ Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L+ +L E+ A +++K + A R+AAR+ARD +K D L GKL ++ Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++EI T+I + Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 479 GAGVG-PDFNLDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537 Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595 Y +++GK + + + + + L + + G ++ + L + Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 I I+D + + + + +L Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631 >gi|145221416|ref|YP_001132094.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK] gi|145213902|gb|ABP43306.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK] Length = 675 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 268/678 (39%), Positives = 385/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ S Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V + DG V+D+GRGIP +H GI +V+MT LHAGGKF + +Y+VSG Sbjct: 60 GFATKVDVRILEDGGVQVTDDGRGIPVAMHS-TGIPTIDVVMTVLHAGGKFEEGAYQVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALSS L+ ++++G+ + ++ + L G + TGT + F Sbjct: 119 GLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVP-GTLRK-GDPTDKTGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF +++++T+ RL+E++FLN + I L D+R Sbjct: 177 PEIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ FV +++R K + S I G + +++AM+WN G Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K+ ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK ++ K + ++ Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + + ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G++ I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|206968830|ref|ZP_03229785.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134] gi|228922304|ref|ZP_04085611.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953865|ref|ZP_04115904.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071096|ref|ZP_04204322.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185] gi|229080802|ref|ZP_04213320.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2] gi|229191682|ref|ZP_04318661.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876] gi|206735871|gb|EDZ53029.1| DNA topoisomerase IV, B subunit [Bacillus cereus AH1134] gi|228591844|gb|EEK49684.1| DNA topoisomerase 4 subunit B [Bacillus cereus ATCC 10876] gi|228702536|gb|EEL55004.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-2] gi|228712036|gb|EEL63985.1| DNA topoisomerase 4 subunit B [Bacillus cereus F65185] gi|228805833|gb|EEM52413.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837359|gb|EEM82693.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 654 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|76786737|ref|YP_329857.1| DNA topoisomerase IV subunit B [Streptococcus agalactiae A909] gi|76799494|ref|ZP_00781632.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21] gi|77412830|ref|ZP_00789035.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515] gi|76561794|gb|ABA44378.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae A909] gi|76585155|gb|EAO61775.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 18RS21] gi|77161126|gb|EAO72232.1| DNA topoisomerase IV, B subunit [Streptococcus agalactiae 515] Length = 642 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 263/641 (41%), Positives = 391/641 (60%), Gaps = 16/641 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I V Sbjct: 2 TNYGDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRIDVI 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS TV+D+GRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 61 INKDGSITVTDHGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALSSWL++ I R+G IY F N G L G+A +GT V+F+P +FS Sbjct: 120 VNALSSWLEVEIIRDGAIYRQRFENGGKPVTTLKKIGTAPKSKSGTSVSFMPDQSVFSTI 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 DF ++T+ RL+E +FL +V ++L D RS E + Y+ G++ FV YL+ K+ L Sbjct: 180 DFKFNTIAERLKESAFLLKNVTLTLTDNRSEEAEHLEFHYENGVQDFVEYLNEDKETLTP 239 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + +G I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y Sbjct: 240 -IMFFEGEEQEFHIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKSMNDYAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +V+ V++ Sbjct: 299 KTGLLKEKDKNLEGSDYREGLSAILSILVPEEHLQFEGQTKDKLGSPLARPIVDGIVSEK 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L+ +L E+ A +++K + A R+AAR+ARD +K D L GKL ++ Sbjct: 359 LTYFLMENGDLASNLIRKAIKARDAREAARKARDESRNGKKSKKDKGLLSGKLTPAQSKN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++EI T+I + Sbjct: 419 AKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMADIIKNEEINTMIHTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+I+ + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 479 GAGVG-PDFNIDDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGHVYIALPPL 537 Query: 542 YGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRNFI---DDAL 595 Y +++GK + + + + + L + + G ++ + L + Sbjct: 538 YKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSLLQRYKGLGEMNADQLWETTMNPETRT 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 I I+D + + + + +L Sbjct: 598 LIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDNVKFTLEE 638 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R +I + L+ + KG Sbjct: 512 LLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKKEIVEYAWTDIELEELRQKFGKGSL 571 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+V PRR++I++N Sbjct: 572 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVPPRRQWIEDN 631 >gi|21322770|dbj|BAB97399.1| DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum ATCC 13032] Length = 711 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 278/685 (40%), Positives = 393/685 (57%), Gaps = 49/685 (7%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+EV+DN++DE++ G+A + Sbjct: 30 NTEHNYDASSITILEGLEAVRKRPGMYIGST-GPRGLHHLIWEVVDNSVDEAMAGHATKV 88 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DG V D+GRGIP D+H G +V+MT+LHAGGKF+ SY VSGGLHGVG Sbjct: 89 EVTLLEDGGVQVVDDGRGIPVDMHPS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGLHGVG 147 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS+ ++ IK G + +F + D + G TGT + F P ++IF Sbjct: 148 ISVVNALSTRVEADIKLHGKHWYQNFEKSVPDELIE--GGNARGTGTTIRFWPDAEIFET 205 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE--------------------------- 217 +F+++T+ RL+E++FLN + I+L D R+ + Sbjct: 206 TEFDFETISRRLQEMAFLNKGLTITLTDNRATDEELELEALAEQGETATELSLDEIDNET 265 Query: 218 ----------------PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDL 261 ++ Y G+E +V YL+R K + S + + D+ +++ Sbjct: 266 ELVEETTDAPKKPKKREKKKIFHYPNGLEDYVHYLNRSKTNIHPSIVSFEAKGDDHEVEV 325 Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321 AM+WN Y E+V F N I ++GGTH G RSALT + Y + K+ + ++ GDD Sbjct: 326 AMQWNSSYKESVHTFANTINTREGGTHEEGFRSALTSLMNRYAREHKLLKEKEANLTGDD 385 Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 CREG ++V+S+++ DP+F QTK KL ++E++S V+ N+ + WLE +P EAK+I+ K Sbjct: 386 CREGLSAVISVRVGDPQFEGQTKTKLGNTEIKSFVQRMANEHIGHWLEANPAEAKVIINK 445 Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441 + ++ R AAR+ARDL RRK D+ LPGKLADC +DP+KSEL++VEGDSAGGSAK Sbjct: 446 AVGSAQARLAARKARDLVRRKSATDLGGLPGKLADCRSKDPEKSELYIVEGDSAGGSAKS 505 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINKLRYHKI+ Sbjct: 506 GRDSMFQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKIV 564 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLE 560 +M DADVDG HI TLLLT FR MP L+ G +Y+ +PPLY + + + +E + Sbjct: 565 LMADADVDGQHIATLLLTLLFRFMPDLVAEGHVYLAQPPLYKLKWQRGEPGFAYSDEERD 624 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISG 620 + L + D N + D T ++A Sbjct: 625 EQLNEGLAAGRKINKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELF 684 Query: 621 VFNCESDQEINVSLASKLANRLNFI 645 D S ++ A + F+ Sbjct: 685 SILMGDDVVARRSFITRNAKDVRFL 709 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%) Query: 723 LDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L+ + GRK I+ +QRYKGLGEMNAS+LWETT++P R L RV ITDA +AD+LFS Sbjct: 627 LNEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTMDPTVRILRRVDITDAQRADELFS 685 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V RR FI N+ LDI Sbjct: 686 ILMGDDVVARRSFITRNAKDVRFLDI 711 >gi|163941204|ref|YP_001646088.1| DNA topoisomerase IV subunit B [Bacillus weihenstephanensis KBAB4] gi|163863401|gb|ABY44460.1| DNA topoisomerase IV, B subunit [Bacillus weihenstephanensis KBAB4] Length = 654 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 398/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G+IYE F N G L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG S++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ L + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|291459211|ref|ZP_06598601.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291418465|gb|EFE92184.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 642 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 256/600 (42%), Positives = 358/600 (59%), Gaps = 20/600 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ Y+ADSI +L+GL+AV++RP MYIG G GL+H+IYE+LDN++DE L GY Sbjct: 1 MAEK-----YNADSITVLEGLEAVRRRPGMYIGSV-GTKGLNHLIYEILDNSVDEHLAGY 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL+ DGSCTV DNGRGIP +HK+ G+SA V+MT LHAGGKFN SYK+SGGL Sbjct: 55 CTKIWVTLDSDGSCTVRDNGRGIPVGIHKK-GVSAERVVMTTLHAGGKFNASSYKISGGL 113 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTF 175 HGVG SVVNALSS++++R+ ++G IYE + GI L V G + GTE+ F Sbjct: 114 HGVGSSVVNALSSYMRIRVFQDGKIYEDEYSRGIPTKELSDGMPPVIGKT-REKGTEIRF 172 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 +P +IF F + L RL E ++LN + I D+R E G+ AFV Sbjct: 173 IPDPEIFEKTQFRAEWLMSRLHETAYLNPELSIHYCDRRGEEEILADYHEPEGLRAFVRD 232 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 LDR + I +G +N ++ +++ D + EN+L F N+I ++GGTH+ G ++ Sbjct: 233 LDRDCGEAVSPEIYFRGRAENTELECCIQFTDSFEENILGFCNDIYTQEGGTHIVGFKTK 292 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 T+ I Y + K+ + G D R G T+V+++K P+P F QTK KL S + Sbjct: 293 FTQLINGYARELGLLKEKDPNFTGADTRNGMTAVIALKYPEPIFEGQTKTKLASLDAAKH 352 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V + + LS + + + K I+ ++ +R +A+ K S GKLA Sbjct: 353 VAAIAGEELSHYFDRNIEVVKAIIGCAEKSARIRRQEEKAKTNLLSKSKYSFDS-NGKLA 411 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +C R+P+ E+F+VEGDSAGGSAK R R QAILPLRGKILNVE+A DK+L++ EI Sbjct: 412 NCISREPENCEIFIVEGDSAGGSAKSSRDRNTQAILPLRGKILNVEKASIDKVLANAEIK 471 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 T+I A G G + + FDI+KLRYHKII+MTDADVDG+HI TLLLTFF+R MP LI G Sbjct: 472 TMINAFGCGFSEGYGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPDLIREG 531 Query: 533 FLYIIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +Y+ PPLY T + + +Y+ D+++L Y G + ++L Sbjct: 532 HVYVSMPPLYLATPSAKKEKAEYLYDDKALLRYREKHREGSYEIKRFKGLGEMDPSELWE 591 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 54/94 (57%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 + +LL ++R+KGLGEM+ S+LWETTLNP+ R L RV+I Sbjct: 548 KKEKAEYLYDDKALLRYREKHREGSYEIKRFKGLGEMDPSELWETTLNPENRVLKRVEIE 607 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 DA A ++ LMG EV PRREFI E++ + +D Sbjct: 608 DARLASEVTGMLMGTEVGPRREFIYEHAREATID 641 >gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans ATCC 11563] gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans ATCC 11563] Length = 689 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 281/639 (43%), Positives = 405/639 (63%), Gaps = 11/639 (1%) Query: 1 MSDNIQ-NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + YDA IQ+L+GL+AV+KRP MYIG T SGLHH+++E++DN+IDE+L G Sbjct: 50 MAKKRELAKDYDASQIQVLEGLEAVRKRPGMYIGSTSA-SGLHHLVWEIVDNSIDEALAG 108 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A I VT+ D S TV D+GRGIP D+ G A E + T LHAGGKF YKVSGG Sbjct: 109 FAGHIQVTIEKDNSITVVDDGRGIPVDIQSNTGRPAVETVFTVLHAGGKFGGGGYKVSGG 168 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS WL + + + G IY F G + + + TG + GT V F P + Sbjct: 169 LHGVGASVVNALSEWLHVYVHKNGRIYHQEFRQGAIVSDVEQTGDT-DTHGTVVHFKPDA 227 Query: 180 DIFSVQDFNYDTLQH-RLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF+ + + R+REL+FLN ++ISL+D RS + + Y+GGI+ ++ Y+++ Sbjct: 228 EIFTETTTFEFEVLNRRVRELAFLNKGLRISLMDARSENHKTASYHYEGGIKEYIEYMNK 287 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L + PI ++ +D I +++A+++ DG+H N+L F NNI +GG H SG ++ALTR Sbjct: 288 DKDVLFEQPIYLEDEQDGIEVEVALQYTDGFHSNILSFANNIHTFEGGMHESGAKTALTR 347 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y K+++ ++ G+D REG T ++SI+ PDP+F QTK KL +SEVR++ ++ Sbjct: 348 VINNYARSQKLIKENEDNLTGEDVREGITLIVSIRHPDPQFEGQTKMKLGNSEVRTITDN 407 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +L E+P A+ IV K AS R AA+RAR++TR+K L+I++LPGKLADCS Sbjct: 408 LFATHFETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGLEISNLPGKLADCS 467 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P++SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++LS++EI +L Sbjct: 468 SRNPEESELFIVEGNSAGGSAKQGRSRHFQAILPIRGKILNVEKASMDRILSNEEIRSLF 527 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA+GTG Q+ FDI K RYHK++IMTDADVDGAHIR LLLT +R M ++ G++YI Sbjct: 528 TAMGTGW-QNDFDITKARYHKLVIMTDADVDGAHIRALLLTLIYRYMRPILDAGYVYIAV 586 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + +GK + Y+ ++ LE+YL + + G + L + Sbjct: 587 PPLYQVRQGKKIVYLDTDKQLEEYLQTIPATPKPAIQRYKGLGEMDAEQLWET-----TM 641 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + + +E I + + + + Sbjct: 642 DPANRTLLQVNVDDAVEADKIINMLMGDHVEPRRDFIEE 680 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 111/293 (37%), Gaps = 8/293 (2%) Query: 513 IRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 +RT+ F I + + T + + + Sbjct: 401 VRTITDNLFATHF-ETFLLENPQIARRIVDKGTVASKARLAAKRAREMTRKKSGLEISNL 459 Query: 573 ELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + + FI + K H + + + + N E + Sbjct: 460 PGKLADCSSRNPEESELFIVEGNSAGGSAKQGRSRHFQAIL--PIRGKILNVEKASMDRI 517 Query: 633 SLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKR- 691 ++ + + + + + LV V + + + + +Y R Sbjct: 518 LSNEEIRSLFTAMGTGWQNDFDITKARYHKLVIMTDADVDGAHI--RALLLTLIYRYMRP 575 Query: 692 IFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQ 749 I + L + G KI + L + + +I ++QRYKGLGEM+A Q Sbjct: 576 ILDAGYVYIAVPPLYQVRQGKKIVYLDTDKQLEEYLQTIPATPKPAIQRYKGLGEMDAEQ 635 Query: 750 LWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 LWETT++P R+LL+V + DA +AD + + LMGD VEPRR+FI+EN+ + +D Sbjct: 636 LWETTMDPANRTLLQVNVDDAVEADKIINMLMGDHVEPRRDFIEENATYANID 688 >gi|229151792|ref|ZP_04279991.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550] gi|228631605|gb|EEK88235.1| DNA topoisomerase 4 subunit B [Bacillus cereus m1550] Length = 654 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|304384956|ref|ZP_07367302.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici DSM 20284] gi|304329150|gb|EFL96370.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pediococcus acidilactici DSM 20284] Length = 681 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 263/601 (43%), Positives = 369/601 (61%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I ++YD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MA-KIGKTTYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ D S TV D+GRG+P +H + G AEVI T LHAGGKF Q YK SGGL Sbjct: 59 GKEINVTIRSDNSITVVDHGRGMPVGMH-KSGKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L + I R+ YE +F+N G L G GT VTF P Sbjct: 118 HGVGASVVNALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ FN++TL RLRE +FL V+I+L D+R+ + Y+ GI+ FV YL+ Sbjct: 178 TIFTTTVFNFNTLAVRLRESAFLLKGVKITLTDERAGHEQAEEYLYEEGIKEFVEYLNED 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + + GS+ I +++A ++NDGY E VL F NN+ KDGGTH G+RS T+ Sbjct: 238 -KDTLGNIMYFDGSKHGIEVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + K K+ +++ G D REG ++V+SI++P+ F QTKEKL + E R +VE Sbjct: 297 FNEFARKVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIVE 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L E+ A+ +V+K ++A R AAR+ARD T ++ L GKL Sbjct: 357 AVVSEQLGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+ ++ ++EI Sbjct: 417 PAQSKNAKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F + Y K+IIMTDAD DGAHI+TLLLTFF++ M +I G +Y Sbjct: 477 TIIYTIGAGVG-PEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + ++Y +E LE+ ++ F + + + Sbjct: 536 IALPPLYKLQKGANKKTKIEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTM 595 Query: 592 D 592 + Sbjct: 596 N 596 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 3/262 (1%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + + + E + ++ L SKN +N + Sbjct: 374 AQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKNAKKNELFLVEG 433 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + K + V N E + ++ ++ + I + Sbjct: 434 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGPEFKVE 493 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715 +N D ++ + F + I + +I + L K K Sbjct: 494 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGANKKTK 553 Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + +G S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I D + A Sbjct: 554 IEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMNPDTRTLVRVRIDDDTLA 613 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I+ N Sbjct: 614 ERRVTTLMGDKVEPRRKWIESN 635 >gi|289167707|ref|YP_003445976.1| DNA gyrase, B subunit [Streptococcus mitis B6] gi|288907274|emb|CBJ22109.1| DNA gyrase, B subunit [Streptococcus mitis B6] Length = 648 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIEVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDIAVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIS 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRAKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRAKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|253576486|ref|ZP_04853815.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844123|gb|EES72142.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 661 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 269/612 (43%), Positives = 384/612 (62%), Gaps = 23/612 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +S YDAD IQ+L+GL AV+KRP MYIG T SGLHH+++E++DNA+DE L Y I + Sbjct: 20 SSGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCTKIDI 78 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TLN DGS TV DNGRGIPT +H + GI +V+ T LHAGGKF YK SGGLHGVG S Sbjct: 79 TLNKDGSVTVLDNGRGIPTGMH-KTGIPTPQVVYTILHAGGKFGGAGYKKSGGLHGVGAS 137 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVTFL 176 V NALS WL++ I R+G I+ M F G L + G+ N TGT+VTF Sbjct: 138 VTNALSEWLEVEIYRDGKIHRMRFEYWVDEKGIEHVGEPVTGLEIIGNT-NKTGTKVTFK 196 Query: 177 PSSDIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY 235 P +FS NYDTL RL+E++FLNS ++++L D+R+ R FY+GG FV + Sbjct: 197 PDIRVFSGGIGLNYDTLAERLQEIAFLNSGLKVTLKDERAG--RSDEFFYEGGASQFVEF 254 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 L+ K L I RD+I +++A+++N GY E ++ F N+IP + GGTH +G ++A Sbjct: 255 LNDGKDVLH-DVIHFYAERDDIEVEVALQYNAGYTETLVSFVNSIPTRGGGTHETGFKTA 313 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 TR + Y K+ K+ +++ G+D REG +V+S+KM + F QTK++L S+ RS Sbjct: 314 YTRVMNEYARKNGMLKEKDKNLEGNDLREGMMAVISVKMSEVEFVGQTKDQLGSASARSA 373 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKL 414 VES V + ++ +LEE+P A+ ++KK + AS R+AAR+ARD R K + ++L GKL Sbjct: 374 VESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREAARKARDEMRSGKKRSESSNLGGKL 433 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 +D ++ELF+VEGDSAGGSAKQGR + QAILPL+GK +N E+A+ +L + E Sbjct: 434 TPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGKPMNPEKAKLADILKNDEY 493 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +I+A+G GIG F + + KIIIMTDAD DGAHI+ LLLTFF+R M LI G + Sbjct: 494 RAIISAIGAGIG-PEFALEDSNFSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDAGRV 552 Query: 535 YIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 YI +PPLY ITR ++++Y +E L++YL + E++ + + + Sbjct: 553 YIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFGKNFELQRYKGLGEMNPEQLWETT 612 Query: 591 IDDALKIDKLIK 602 ++ + ++ Sbjct: 613 MNPETRTMLQVQ 624 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 6/293 (2%) Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 D G+ + + ++ + + + + + ++ ++ + Sbjct: 363 DQLGSASARSAVESVVGEKMAVFLEENPQVAQTLIKKAIQASKAREA-ARKARDEMRSGK 421 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 SE L SK+ R + K + N E Sbjct: 422 KRSESSNLGGKLTPAQSKDYTRTELFIVEGDSAGGSAKQGRDSKLQAILPLKGKPMNPEK 481 Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 + ++ + ++ I + +N ++ + F + Sbjct: 482 AKLADILKNDEYRAIISAIGAGIGPEFALEDSNFSKIIIMTDADTDGAHIQVLLLTFFYR 541 Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742 I + R+ + + K++ L + + G K +QRYKGL Sbjct: 542 YMKPLIDAGRVYIAQPPLYKITRRSGKLETVRYAWTDEQLQNYLKEFG-KNFELQRYKGL 600 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GEMN QLWETT+NP+TR++L+V+I DA++A+ S LMGD+V+PR+ +I EN Sbjct: 601 GEMNPEQLWETTMNPETRTMLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 653 >gi|324999887|ref|ZP_08120999.1| DNA gyrase, B subunit [Pseudonocardia sp. P1] Length = 700 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 261/587 (44%), Positives = 366/587 (62%), Gaps = 43/587 (7%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D ++Y A SI +LKGL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ G+A Sbjct: 16 DKAAKNAYGASSITVLKGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGHAT 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + VTL DG V D+GRGIP ++H E EV++T LHAGGKF+ KSY VSGGLHG Sbjct: 75 KVVVTLQPDGGVRVEDDGRGIPVEMHPVEKKPTLEVVLTSLHAGGKFDDKSYAVSGGLHG 134 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDI 181 VGVSVVNALS+ L++ ++ +G I++ + + LV G+ DTGT +T+ I Sbjct: 135 VGVSVVNALSTALEVEVRVDGKIWKQRYDHAKP-GELVEAGTTKKSDTGTTITYWADPTI 193 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDK---------------------------- 213 F + +T++ RL+E +FLN + + L D+ Sbjct: 194 FETTSYTLETIRRRLQEQTFLNKGLTMVLRDERRPETPATGVPSSDAVDEDGNPVEAAPV 253 Query: 214 -----------RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 +P+E Y G+E FV++L++ K P+ + + G +++A Sbjct: 254 VDVDEEPDAEGYVAKPKEYVFHYPNGLEDFVAHLNKSKDPIHRKIVAYTGEGPGHQVEVA 313 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M+WN GY E+V F N I +GGTH G R ALT + Y K+ ++ GDD Sbjct: 314 MQWNSGYSESVYTFANTINTHEGGTHEEGFRHALTATVNRYARDKKLIKEKDPALSGDDI 373 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG +++S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK IV K Sbjct: 374 REGLAAIVSVKISEPQFEGQTKTKLGNTEVKSFVQRVSNEWLADWFERNPNEAKTIVNKA 433 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + ++ R AARRAR+L RRK DI LPGKL+DC RDP+ EL++VEGDSAGGSAK G Sbjct: 434 VSSAQARLAARRARELVRRKSAGDIGGLPGKLSDCRSRDPESCELYIVEGDSAGGSAKAG 493 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R +QAILP+RGKI+NVE+AR D++L + E+ ++ITA+GTGI D FD++KLRYHK+++ Sbjct: 494 RDSMHQAILPIRGKIINVEKARIDRVLKNTEVQSIITAMGTGI-HDDFDLSKLRYHKLVL 552 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 M DADVDG HIRTLLLT FR M LI NG +++ +PPLY + G Sbjct: 553 MADADVDGQHIRTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWGGR 599 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 4/86 (4%) Query: 722 LLDTIFSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L++ + G+K +QRYKGLGEM+A +LWETT++P R LL+V + DA+ AD+LFS Sbjct: 615 LIEAGRAAGKKLPKDQGVQRYKGLGEMDAKELWETTMDPTNRLLLQVSLDDAATADELFS 674 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMG++VE RR FI N+ LD+ Sbjct: 675 VLMGEDVESRRSFITRNAKDVRFLDV 700 >gi|229061161|ref|ZP_04198511.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603] gi|228718032|gb|EEL69672.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH603] Length = 653 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 265/655 (40%), Positives = 396/655 (60%), Gaps = 18/655 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D I+V + Sbjct: 6 QYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVI 64 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 65 HKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV 123 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS WL + IKR+G+IYE F N G L G ++GT + F P + IFS ++ Sbjct: 124 NALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDTTIFSTTNY 182 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ K + Sbjct: 183 NYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-V 239 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Y K Sbjct: 240 VYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKV 299 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ +++ G D REG S++S+++P+ +F QTK KL +SE RS +++ V++ L+ Sbjct: 300 SLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSIDAIVSEHLA 359 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPK 423 +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL R+P+ Sbjct: 360 YFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQ 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI T+I A+G Sbjct: 420 KNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGG 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++I PPLY Sbjct: 480 GVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYK 538 Query: 544 IT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--I 597 ++ + + ++Y +E L ++ + + + ++ + I Sbjct: 539 VSKGKGKSEVIEYAWSDEELGSVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLI 598 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 I D + ++ + + + N + ++E Sbjct: 599 RVKIDDASRAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 653 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 453 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ L ++ KG +Q Sbjct: 513 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGSVTKKVGKGYMLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 573 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 630 >gi|229179883|ref|ZP_04307229.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W] gi|228603564|gb|EEK61039.1| DNA topoisomerase 4 subunit B [Bacillus cereus 172560W] Length = 654 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K +I LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEIIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|229012772|ref|ZP_04169941.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048] gi|228748453|gb|EEL98309.1| DNA topoisomerase 4 subunit B [Bacillus mycoides DSM 2048] Length = 654 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 262/601 (43%), Positives = 384/601 (63%), Gaps = 18/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+G+IYE F N G L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGSIYEQRFENGGTPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFSGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG S++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGLASIVSVRVPEDVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ T +K +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L D ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 D 592 + Sbjct: 592 N 592 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TGPCSLLDTIFSIGRKGISM 736 F + I + ++ + + K ++ L D +G KG + Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELGDVTKKVG-KGYML 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLWETT+NP+TR+L+RVKI DAS+A+ + LMGD+VEPRR++I+ N Sbjct: 573 QRYKGLGEMNADQLWETTMNPETRTLIRVKIDDASRAERRVTTLMGDKVEPRRKWIERN 631 >gi|315441702|ref|YP_004074581.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1] gi|315260005|gb|ADT96746.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1] Length = 675 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 268/678 (39%), Positives = 385/678 (56%), Gaps = 38/678 (5%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ S Y ADSI++L+GL+AV+KRP MYIG T GE GLHH+I+EV+DNA+DE++ Sbjct: 1 MAAQKKNAPSEYGADSIKVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNAVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+A + V + DG V+D+GRGIP +H GI +V+MT LHAGGKF + +Y+VSG Sbjct: 60 GFATKVDVRILEDGGVQVTDDGRGIPVSMHS-TGIPTIDVVMTVLHAGGKFEEGAYQVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALSS L+ ++++G+ + ++ + L G + TGT + F Sbjct: 119 GLHGVGVSVVNALSSRLEADVRKDGHEWFQTYDRSVP-GTLRK-GDPTDKTGTTIRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------ 214 +IF +++++T+ RL+E++FLN + I L D+R Sbjct: 177 PEIFETTNYDFETIARRLQEMAFLNKGLTIELTDERVAPEEVVDDVVSDHAEAPKSAEEK 236 Query: 215 ------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 + + Y GG+ FV +++R K + S I G + +++AM+WN G Sbjct: 237 AAEASAPQKVKHRVFHYPGGLVDFVKHINRTKTAIQPSVIDFDGKGEGHEVEIAMQWNAG 296 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V F N I +GGTH G R+ALT + Y + K+ ++ GDD REG + Sbjct: 297 YSESVHTFANTINTHEGGTHEEGFRAALTTVVNKYAKDKKLLKEKDPNLTGDDIREGLAA 356 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K+ P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK ++ K + ++ Sbjct: 357 VISVKVSQPQFEGQTKTKLGNTEVKSFVQKICNEQLNHWFESNPAEAKTVINKAVSSAQA 416 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+L RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR Q Sbjct: 417 RIAARKARELVRRKSATDIGGLPGKLADCRSTDPTKSELYVVEGDSAGGSAKSGRDSMFQ 476 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI+KLRYHKI++M DADV Sbjct: 477 AILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISKLRYHKIVLMADADV 535 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQS 567 DG HI TLLLT FR M L+ NG +++ +PPLY + + ++ + + L Sbjct: 536 DGQHISTLLLTLLFRFMKPLVENGHIFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEAGR 595 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESD 627 + + D + + A D Sbjct: 596 AAGKRINVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGED 655 Query: 628 QEINVSLASKLANRLNFI 645 E S ++ A + F+ Sbjct: 656 VEARRSFITRNAKDVRFL 673 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G++ I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 590 LLEAGRAAGKR-INVEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 648 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 649 SILMGEDVEARRSFITRNAKDVRFLDV 675 >gi|313680912|ref|YP_004058651.1| DNA gyrase subunit b [Oceanithermus profundus DSM 14977] gi|313153627|gb|ADR37478.1| DNA gyrase subunit B [Oceanithermus profundus DSM 14977] Length = 637 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 281/636 (44%), Positives = 385/636 (60%), Gaps = 10/636 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S YDA SI++LKGL+ V+KRP+MYI T G G H ++ E+LDN++DE+L GYAD I VT Sbjct: 2 SKYDASSIKVLKGLEGVRKRPAMYIAGT-GTDGYHQLLTEILDNSVDEALAGYADTIKVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS +V DNGRGIP D+ EG A EVI T LHAGGKF + +YKVSGGLHGVG SV Sbjct: 61 LHKDGSASVEDNGRGIPVDVMAGEGKPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSV-Q 185 VNAL+ W+ + + R G Y + F G + PL V G A TGT V F+P + IF Sbjct: 121 VNALTDWMVVEVWRGGKHYRIEFARGEVKKPLEVVGKAPKGKTGTRVHFMPDATIFEEGL 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y ++ R+RE+S+L ++I L D+RS + + KGG+ +F L + L Sbjct: 181 EFDYRRVRRRVREVSYLAGGLRIELADERSGK--QEVFHDKGGVASFAKALAEGEDLLYD 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P R+ G D++ +D+ GY +L + N IP +DGG HLSG R A TR + Y + Sbjct: 239 KPGRLSGQVDDVEVDVGFIHTKGYTTQLLSYANMIPTRDGGVHLSGFRGAYTRAMNQYAK 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K + GDD EG +V+S+K+P P+F QTK KL++ E V S V + L Sbjct: 299 KAGLQKNGQPKPSGDDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAERAVSSVVYEKLM 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 +LE +P AK I K A+ R+AAR+AR+L RR+ L+ LPGKLADC +P ++ Sbjct: 359 DFLESNPRIAKTIYDKAQRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTEEPDEA 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + E+ +I A+G GI Sbjct: 419 ELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEVRAMIAAIGAGI 478 Query: 486 ----GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 + FD++ +RYHKII+MTDADVDG+HIRTLLLTFF+R M +I G+LYI +PPL Sbjct: 479 QGTGDEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLYIAQPPL 538 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDALKIDKL 600 Y + G+ +Y+ D+E+L+ L + G ++ L ++ ++ K Sbjct: 539 YKLKVGRRSEYIFDDEALKAALKKVGDKKYEIQRFKGLGEMNPEQLWETTMNPETRVLKQ 598 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + E + + V E N A Sbjct: 599 VTIEDALYASEIFEDLMGADVQPRREFIEENAKFAE 634 Score = 175 bits (444), Expect = 3e-41, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 72/155 (46%) Query: 649 SEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI 708 E + ++ V + F + I + + L Sbjct: 483 DEAHFDVDSVRYHKIILMTDADVDGSHIRTLLLTFFYRFMRPIIDRGYLYIAQPPLYKLK 542 Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I +L + +G K +QR+KGLGEMN QLWETT+NP+TR L +V I Sbjct: 543 VGRRSEYIFDDEALKAALKKVGDKKYEIQRFKGLGEMNPEQLWETTMNPETRVLKQVTIE 602 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA A ++F LMG +V+PRREFI+EN+ + LD+ Sbjct: 603 DALYASEIFEDLMGADVQPRREFIEENAKFAELDV 637 >gi|299536168|ref|ZP_07049482.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1] gi|298728443|gb|EFI69004.1| DNA topoisomerase IV subunit B [Lysinibacillus fusiformis ZC1] Length = 658 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 268/662 (40%), Positives = 384/662 (58%), Gaps = 17/662 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ S Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MTNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H + G E+I T LHAGGKF Q YK SGGL Sbjct: 60 GSHIIVTIHKDQSMSVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS++L++ I R+G Y F + G L G TGT V FLP Sbjct: 119 HGVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGQPVTTLENIGQTK-QTGTLVHFLPDE 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV FNYDTL RLRE +FL ++I LID+R E + FY+ GIEAFV+YL+ Sbjct: 178 TIFSVTKFNYDTLAERLRESAFLLKGLKIELIDER-EEGKSDVFFYENGIEAFVAYLNEE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L ++G +D I ++ A ++NDGY E +L F NN+ +DGGTH +G ++ALTR Sbjct: 237 KDVLHP-VKYVEGVQDEIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y K K +++ G D REG +++S+++P+ +F QTK KL +SE RS V+ Sbjct: 296 FNEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVD 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V++ + LEE+ + +V+K + A VR+AAR+AR+ +K L GKL Sbjct: 356 SVVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLT 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+ K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ ++ ++EI Sbjct: 416 PAQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIS 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G F + Y K++IMTDAD DGAHI+ LLLTFF+R M LI +G +Y Sbjct: 476 TIIHAIGAGVG-TDFAVEDSAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIESGKVY 534 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + + +Y +S ++ ++ + ++ Sbjct: 535 IALPPLYKVSKGTGKKEII------EYAWTESDLQKAIKKVGKGYILQRYKGLGEMNADQ 588 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 D + + IE + + + ++F E Sbjct: 589 LWDTTMNPETRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDSNILEN 648 Query: 656 SI 657 Sbjct: 649 EF 650 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 107/260 (41%), Gaps = 11/260 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 R + ++ + + ++ L S+N ++ ++ Sbjct: 379 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRN---AAKNELYLVEGDSA 435 Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + QA++ V N E + ++ +++ ++ I + + Sbjct: 436 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 495 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716 D +V + F + I S ++ + + K +I Sbjct: 496 YDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIESGKVYIALPPLYKVSKGTGKKEIIEY 555 Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L I +G KG +QRYKGLGEMNA QLW+TT+NP+TR+L+RV I D ++A+ Sbjct: 556 AWTESDLQKAIKKVG-KGYILQRYKGLGEMNADQLWDTTMNPETRTLIRVTIEDGARAER 614 Query: 776 LFSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ N Sbjct: 615 RVTTLMGDKVEPRRKWIEAN 634 >gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a] Length = 633 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 308/585 (52%), Positives = 415/585 (70%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 1 MAEENYGAQNIQVLEGLDAVRKRPGMYIGSTS-IRGLHHLVYEVVDNSVDEALAGYATHI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++T+LHAGGKF YKVSGGLHGVG Sbjct: 60 EVSINEDNSITVVDDGRGIPTGMH-ESGMSAVELVLTKLHAGGKFGGGGYKVSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G I E+ F G + L G A TGT V F P S+IF Sbjct: 119 ISVVNALSEWTKVQVSQNGIIQEIDFARGHKTSELHEIGKAE-GTGTTVIFKPDSEIFET 177 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 FN+DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 178 TVFNFDTLKIRLQELAFLNKGLRITLSDLRQEEPRIESFHYEGGLSSFITFLNENKEVVN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 238 PTVIDIENTKDDVVVDVALQYNDSYSENLLSFVNNINTVDGGTHLSGFRAALTRTLNDYG 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+++ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V++GL Sbjct: 298 RKSGLIKENESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVSEGL 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 358 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 418 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 478 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 537 KKGKSHWYVYSDAELTAKLDEVGRDGITIQRYKGLGEMNPEQLWE 581 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 434 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 490 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 491 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 549 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR GI++QRYKGLGEMN QLWETT+NP+ R++L+V + D+ +AD +F+ L Sbjct: 550 ELTAKLDEVGRDGITIQRYKGLGEMNPEQLWETTMNPENRTILQVSLEDSIEADKIFTVL 609 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 610 MGDKVEPRRKFIEDNAKYVRNLD 632 >gi|229917451|ref|YP_002886097.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b] gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b] Length = 642 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 297/648 (45%), Positives = 421/648 (64%), Gaps = 12/648 (1%) Query: 1 MSDNIQN--SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS+ + +Y AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MSNENEKELQAYGADQIQVLEGLEAVRKRPGMYIGSTSS-RGLHHLVWEIVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D ITVT+ S V DNGRGIP D+ K+ G A EVI T LHAGGKF YKVSG Sbjct: 60 GYCDTITVTVEPGNSIVVEDNGRGIPVDVQKKTGRPAVEVIFTVLHAGGKFGGGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG SVVNALS+ L++ ++R+GN+Y SF G+ L + + TGT V F P Sbjct: 120 GLHGVGASVVNALSTKLEVFVRRDGNVYYQSFKRGVPQGELEIV-GTTDTTGTTVRFFPD 178 Query: 179 SDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 DIF ++++D L RLREL+FLN ++I D R+ E E Y+GGI+++V +L+ Sbjct: 179 GDIFQETLEYDFDLLATRLRELAFLNKGLRIVAKDDRNDETIERNYHYEGGIKSYVEHLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R K + + P+ + G++D I +++A+++N+G+ N+ FTNNIP +GGTH +G ++ALT Sbjct: 239 RSKASIHEEPVYVHGTKDGIEVEIALQYNEGFASNIYSFTNNIPTHEGGTHETGFKTALT 298 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I Y ++ K+ S+ GDD REG T+++S+K P P+F QTK KL +++ R+ + Sbjct: 299 RSINDYAKRFGLMKEADGSLSGDDVREGLTAIVSVKHPAPQFEGQTKTKLGNADARTATD 358 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + +D +L E+P ++IV K L A+ R AA+RAR++TRRKG+L+++SLPGKLADC Sbjct: 359 TLFSDTFEQFLLENPSVGRLIVDKGLMAARARLAAKRAREMTRRKGILEVSSLPGKLADC 418 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +D KSEL++VEGDSAGGSAK GR R QAILP+RGKI+NVE+AR DK+L++QE+ T+ Sbjct: 419 SSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILANQEVRTI 478 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGI D FD++K RYHK+IIMTDADVDGAHIRTLLLTFF+R M L+ +G++YI Sbjct: 479 ITALGTGI-ADEFDLSKARYHKLIIMTDADVDGAHIRTLLLTFFYRYMRPLVESGYVYIA 537 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596 +PPLYG+ GK YV+++ L+ + + G + L N Sbjct: 538 QPPLYGVKHGKETIYVQNDRELQAAIAQLPENARYSVQRYKGLGEMDPEQLWNT-----T 592 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + + IE I ++ + + S N Sbjct: 593 MNPETRSMLRVDLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNL 640 Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats. Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 17/239 (7%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 + S+ I + D + + +E+A + + + + Sbjct: 417 DCSSKDASKSELYIVEGDSAGGSAKSGRDRHFQAILPIRGKIINVEKARLDKILANQEVR 476 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 I +L + +A+ + + K L+ V + F + Sbjct: 477 TIITALGTGIADEFDLSKARYHK-----------LIIMTDADVDGAHIRTLLLTFFYRYM 525 Query: 689 YKRIFSNRIEENYLTILSLICNGDKIKITGPCSL---LDTIFSIGRKGISMQRYKGLGEM 745 + S + + + + I + L + + R S+QRYKGLGEM Sbjct: 526 RPLVESGYVYIAQPPLYGVKHGKETIYVQNDRELQAAIAQLPENAR--YSVQRYKGLGEM 583 Query: 746 NASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + QLW TT+NP+TRS+LRV + DA +AD++F LMGD VEPRR+FIQ ++ LDI Sbjct: 584 DPEQLWNTTMNPETRSMLRVDLQDAIEADEIFETLMGDNVEPRRDFIQSHAHYVKNLDI 642 >gi|168490903|ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04] gi|169833521|ref|YP_001694269.1| DNA gyrase subunit B [Streptococcus pneumoniae Hungary19A-6] gi|182683725|ref|YP_001835472.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14] gi|221231606|ref|YP_002510758.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669] gi|225854322|ref|YP_002735834.1| DNA gyrase subunit B [Streptococcus pneumoniae JJA] gi|225858616|ref|YP_002740126.1| DNA gyrase subunit B [Streptococcus pneumoniae 70585] gi|303255780|ref|ZP_07341821.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455] gi|303260274|ref|ZP_07346245.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293] gi|303261480|ref|ZP_07347428.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292] gi|303264148|ref|ZP_07350069.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397] gi|303266242|ref|ZP_07352133.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457] gi|303268680|ref|ZP_07354470.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458] gi|1490397|emb|CAA91553.1| DNA gyrase [Streptococcus pneumoniae] gi|73916244|gb|AAZ92990.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916262|gb|AAZ92999.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916276|gb|AAZ93006.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916288|gb|AAZ93012.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916298|gb|AAZ93017.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916300|gb|AAZ93018.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916302|gb|AAZ93019.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916304|gb|AAZ93020.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916306|gb|AAZ93021.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916308|gb|AAZ93022.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916310|gb|AAZ93023.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916312|gb|AAZ93024.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916314|gb|AAZ93025.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916316|gb|AAZ93026.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916320|gb|AAZ93028.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916326|gb|AAZ93031.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916330|gb|AAZ93033.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916332|gb|AAZ93034.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916334|gb|AAZ93035.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916338|gb|AAZ93037.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916340|gb|AAZ93038.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916342|gb|AAZ93039.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916350|gb|AAZ93043.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|168996023|gb|ACA36635.1| DNA gyrase, B subunit [Streptococcus pneumoniae Hungary19A-6] gi|182629059|gb|ACB90007.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14] gi|183574700|gb|EDT95228.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04] gi|220674066|emb|CAR68579.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669] gi|225721919|gb|ACO17773.1| DNA gyrase, B subunit [Streptococcus pneumoniae 70585] gi|225722735|gb|ACO18588.1| DNA gyrase, B subunit [Streptococcus pneumoniae JJA] gi|301801650|emb|CBW34348.1| DNA gyrase subunit B [Streptococcus pneumoniae INV200] gi|302597164|gb|EFL64269.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455] gi|302637614|gb|EFL68101.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292] gi|302638598|gb|EFL69062.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293] gi|302641740|gb|EFL72097.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458] gi|302644172|gb|EFL74428.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457] gi|302646553|gb|EFL76779.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397] gi|327390163|gb|EGE88506.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA04375] gi|332076087|gb|EGI86553.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41301] gi|332202670|gb|EGJ16739.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41317] Length = 648 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|73916260|gb|AAZ92998.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVYVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRX 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|23099148|ref|NP_692614.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831] gi|22777376|dbj|BAC13649.1| DNA topoisomerase IV subunit B [Oceanobacillus iheyensis HTE831] Length = 651 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 259/617 (41%), Positives = 384/617 (62%), Gaps = 18/617 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y SIQ+L+GLDAV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I Sbjct: 2 TSDYQYSDSSIQVLEGLDAVRKRPGMYIGSTD-IRGLHHLVYEIVDNAVDEALAGYGKEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S +V D+GRG+PT +H + G EVI T LHAGGKF Q SYK SGGLHGVG Sbjct: 61 QVTIHKDESVSVKDSGRGMPTGMH-QTGKPTTEVIFTVLHAGGKFGQGSYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ R+G Y+ F N G L G G+ + F P IFS Sbjct: 120 ASVVNALSEWLEVTTFRDGFQYQQRFENGGRPVTTLEKKGPT-RKKGSVIRFKPDPTIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +NY+T+ RLRE +FL ++I LID+R + Y G+++FV YL+ K L Sbjct: 179 TIVYNYETISERLRESAFLLKGLKIELIDERHDK--HDVYEYPEGLKSFVDYLNEEKDAL 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + ++G + I ++ A ++NDG+ EN+L F N++ +DGGTH SG R+A+TR + Y Sbjct: 237 HS-IVFMEGEQQEIEVEFAFQFNDGFAENMLSFVNHVRTRDGGTHESGARTAITRTVNDY 295 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K+ ++++ G D REG T V+S+++P+ +F QTK KL ++E RS V+S ++ Sbjct: 296 ARRQGLLKEKEKNLEGTDIREGLTGVVSVRVPEDKLQFEGQTKGKLGTTEARSAVDSVIS 355 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L+ +LEE+P + +++KK + A R+AAR+AR+ T +K A L GKL Sbjct: 356 EHLNYFLEENPDISGMLIKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKLTPAQS 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+P+K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI T+I Sbjct: 416 RNPEKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEISTIIH 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F+++ ++Y KIIIMTDAD DGAHI+ LLLTFF+R M L+ G ++I P Sbjct: 476 TIGAGVGGD-FNLDDVQYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIFIALP 534 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PL+ ++ + + L+Y DE+ L+ + I+ + + + ++ + Sbjct: 535 PLFKVSKGKGKQEKLRYAWDEQELKVAIQELKQGYTIQRYKGLGEMNADQLWETTMNPSS 594 Query: 596 K--IDKLIKDFYPNHDK 610 + I I D + Sbjct: 595 RTLIRVSIDDIARAERR 611 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 373 IKKSIKAKEAREAARKAREEARTGKKRKRKDALLSGKLTPAQSRNPEKNELYLVEGDSAG 432 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QAV+ V N E + +V +++ ++ I ++ Sbjct: 433 GSAKQGRDRKFQAVLPLRGKVINTEKAKLQDVFKNEEISTIIHTIGAGVGGDFNLDDVQY 492 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 D ++ + F + + + +I + + +K++ Sbjct: 493 DKIIIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKIFIALPPLFKVSKGKGKQEKLRYA 552 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L ++G ++QRYKGLGEMNA QLWETT+NP +R+L+RV I D ++A+ Sbjct: 553 WDEQELKVAIQELKQGYTIQRYKGLGEMNADQLWETTMNPSSRTLIRVSIDDIARAERRV 612 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 613 TTLMGDKVEPRRKWIEGH 630 >gi|210612462|ref|ZP_03289320.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787] gi|210151570|gb|EEA82577.1| hypothetical protein CLONEX_01521 [Clostridium nexile DSM 1787] Length = 640 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 253/621 (40%), Positives = 360/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDADSI IL+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY D I Sbjct: 3 KQNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGYCDKIQ 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGS TV DNGRG+P +H++ G+SAA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VILEKDGSATVIDNGRGVPVGMHQK-GVSAARIVYTTLHAGGKFDDTAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS ++ ++I REG I+ + GI L V G TGTEV FLP Sbjct: 121 SVVNALSIYMDVKISREGAIHHDRYERGIPVVELENGLLPVIGKT-RKTGTEVNFLPDDT 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + ++ RL E ++LN ++ I D+R + I + GI F+ L++ K Sbjct: 180 IFEKTRFKAEEVKSRLHETAYLNPNLTIIFEDRRGAQTEHIEYHEEDGILGFIRDLNQKK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + PI +G + I +++ ++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 240 EAIH-EPIYFKGESEGIEVEVVFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTAM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 299 NQYARELGILKEKDSNFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKATGKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + + + + K ++ A+ +R +A+ K GKLA+C R Sbjct: 359 GEEIVRYFDRNLDTLKKVISCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKTARDRSYQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI G +YI Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIFEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y Q ++ + + + ++ + Sbjct: 538 MPPLYKAMPKKGEEEYLYDDKALERYRKRQKGPFTLQRYKGLGEMDADQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + KL++ + E + Sbjct: 598 MLKLVEIEDARMASSVTEMLM 618 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G++ + L+ +KG ++QRYKGLGEM+A QLWETTLNP+TR L V+I Sbjct: 547 KKGEEEYLYD-DKALERYRKR-QKGPFTLQRYKGLGEMDADQLWETTLNPETRMLKLVEI 604 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 DA A + LMG EV PRR FI EN+ + LDI Sbjct: 605 EDARMASSVTEMLMGSEVPPRRAFIYENATEAELDI 640 >gi|225374474|ref|ZP_03751695.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM 16841] gi|225213712|gb|EEG96066.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans DSM 16841] Length = 638 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 253/620 (40%), Positives = 352/620 (56%), Gaps = 15/620 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + YD SI +L+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G D I VT Sbjct: 2 AGYDEHSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNSVDEHLAGACDTIHVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GSCTV DNGRG+P +H + G+SAA ++ T LHAGGKF+ +YK SGGLHGVG SV Sbjct: 61 LEKNGSCTVEDNGRGVPVGMHAK-GVSAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSDIF 182 VNALS ++ + I REG I+ + G+ L G TGT+V FLP +IF Sbjct: 120 VNALSVYMDVEISREGYIHHDRYERGVPVVELENGLLPKIGKTK-KTGTKVNFLPDPEIF 178 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F D ++ R+ E ++LN + I D+R E I + GI FV L+++ + Sbjct: 179 EKTRFKEDEIKSRMHETAYLNPKLTIIYEDRRGEEVEHIVYHEEDGIRGFVKDLNKNTEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + +G + I+++ A ++ + +HEN+L F NNI +GGTH++G ++ T I S Sbjct: 239 LH-DVVYFKGESEGITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVINS 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K+ + G D R G T+V+SIK PDPRF QTK KL + + D Sbjct: 298 YARELGILKEKDVNFTGADVRNGMTAVVSIKHPDPRFEGQTKTKLDNQDAAKATAKVTGD 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 + + +++ K ++ A+ +R RA+ K S GKLA+C RD Sbjct: 358 EIQLFFDKNLETLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESRDA 416 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A G Sbjct: 417 SICEIFIVEGDSAGGSAKTARDRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFG 476 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+ P Sbjct: 477 CGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAMP 536 Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN-FIDDALKI 597 PLY I +Y+ D+ +LE Y S G + L ++ A ++ Sbjct: 537 PLYKVIPGKGEEEYLYDDAALEKYRKAHKGSNFTLQRYKGLGEMDAEQLWETTLNPATRM 596 Query: 598 DKLIKDFYPNHDKTFIEQAV 617 K I+ E + Sbjct: 597 LKRIEIEDGRMASDITELLM 616 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 4/96 (4%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKG--ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 G++ + + L+ KG ++QRYKGLGEM+A QLWETTLNP TR L R++I Sbjct: 545 KGEEEYLYD-DAALEKYRK-AHKGSNFTLQRYKGLGEMDAEQLWETTLNPATRMLKRIEI 602 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 D A D+ LMG++V PR+ FI E++ + LD+ Sbjct: 603 EDGRMASDITELLMGNDVPPRKTFIYEHAHDAELDV 638 >gi|270290230|ref|ZP_06196455.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4] gi|270281011|gb|EFA26844.1| DNA topoisomerase IV, B subunit [Pediococcus acidilactici 7_4] Length = 677 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 261/595 (43%), Positives = 366/595 (61%), Gaps = 13/595 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++YD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I V Sbjct: 2 KTTYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGYGKEINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D S TV D+GRG+P +H + G AEVI T LHAGGKF Q YK SGGLHGVG S Sbjct: 61 TIRSDNSITVVDHGRGMPVGMH-KSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS L + I R+ YE +F+N G L G GT VTF P IF+ Sbjct: 120 VVNALSEKLTVEIVRDKMKYEENFVNGGHPVGTLKKVGKTKESNGTTVTFKPDPTIFTTT 179 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FN++TL RLRE +FL V+I+L D+R+ + Y+ GI+ FV YL+ K + Sbjct: 180 VFNFNTLAVRLRESAFLLKGVKITLTDERAGHEQAEEYLYEEGIKEFVEYLNED-KDTLG 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 + + GS+ I +++A ++NDGY E VL F NN+ KDGGTH G+RS T+ + Sbjct: 239 NIMYFDGSKHGIEVEIAGQYNDGYSETVLSFVNNVRTKDGGTHEVGMRSGWTKAFNEFAR 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K+ +++ G D REG ++V+SI++P+ F QTKEKL + E R +VE+ V++ Sbjct: 299 KVGLLKEKDKNLEGSDVREGLSAVISIRVPEELLEFEGQTKEKLGTPEARPIVEAVVSEQ 358 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L +L E+ A+ +V+K ++A R AAR+ARD T ++ L GKL ++ Sbjct: 359 LGFFLMENGEFAQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+ ++ ++EI T+I + Sbjct: 419 AKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F + Y K+IIMTDAD DGAHI+TLLLTFF++ M +I G +YI PPL Sbjct: 479 GAGVG-PEFKVEDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y + + ++Y +E LE+ ++ F + + ++ Sbjct: 538 YKLQKGANKKTKIEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMN 592 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 3/262 (1%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + + + E + ++ L SKN +N + Sbjct: 370 AQQLVRKAINARDARVAARKARDESRTGKRRKKQDRILSGKLTPAQSKNAKKNELFLVEG 429 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + K + V N E + ++ ++ + I + Sbjct: 430 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGPEFKVE 489 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715 +N D ++ + F + I + +I + L K K Sbjct: 490 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGANKKTK 549 Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + +G S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I D + A Sbjct: 550 IEYAWTDEELEEVSKKMGRGFSLQRFKGLGEMNADQLWETTMNPDTRTLVRVRIDDDTLA 609 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I+ N Sbjct: 610 ERRVTTLMGDKVEPRRKWIESN 631 >gi|73916264|gb|AAZ93000.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + ++ + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENRDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|262282828|ref|ZP_06060595.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA] gi|262261080|gb|EEY79779.1| DNA topoisomerase IV subunit B [Streptococcus sp. 2_1_36FAA] Length = 647 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 274/623 (43%), Positives = 395/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TVSD+GRG+P +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVSDHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 NDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEK--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LED ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKNEVVEYAWTDGELEDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 41/73 (56%), Positives = 57/73 (78%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMG Sbjct: 564 LEDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMG 623 Query: 783 DEVEPRREFIQEN 795 D+VEPRR++I++N Sbjct: 624 DKVEPRRKWIEDN 636 >gi|328956387|ref|YP_004373773.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4] gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4] Length = 647 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 288/590 (48%), Positives = 404/590 (68%), Gaps = 5/590 (0%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 SKQDRAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSE-GLHHLVWEIVDNSIDEALAGFA 67 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I + + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 68 DEINLIIEKDESITVIDNGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLH 127 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L + + ++G IY + G + + + V G + GT V F+P +I Sbjct: 128 GVGSSVVNALSITLDVYVHKDGKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHFVPDPEI 186 Query: 182 FSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F +F++D L R+REL+FLN ++I++ DKR + + + Y+GGI+++V +L+ +K Sbjct: 187 FKETVEFHFDKLATRVRELAFLNKGLKITVEDKREGKEKFLEYHYEGGIKSYVEFLNENK 246 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L PI ++G + I++++AM+ DGYH N+L F NNI +GGTH G ++ALTR I Sbjct: 247 TVLYDEPIFLEGEQQGITLEVAMQHTDGYHNNLLSFANNIHTYEGGTHEFGFKTALTRVI 306 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y +K+ K+++ ++ G+D REG T VLSIK PDP+F QTK KL +SE R++ + Sbjct: 307 NDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEARTITDRLF 366 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + +L E+P A+ IV+K L A+ R AA+RAR++TR+K L+I++LPGKLADCS + Sbjct: 367 SAHFDKFLMENPQVARQIVEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKLADCSSK 426 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI +L TA Sbjct: 427 DPTISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDRILANEEIRSLFTA 486 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++YI +PP Sbjct: 487 MGTGFGND-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPVVEAGYVYIAQPP 545 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 LY + +GK + Y+ EE L++YL LS + + G + L Sbjct: 546 LYQVRQGKKMVYLDSEEELDNYLKEIPLSPKPVIQRYKGLGEMDAEQLWE 595 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT+NP+ R +L+V + DA +AD LMGD VEPRR FI+EN Sbjct: 579 IQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDMLMGDRVEPRRLFIEEN 638 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 639 ARYVQNLDI 647 >gi|169828512|ref|YP_001698670.1| DNA topoisomerase IV subunit B [Lysinibacillus sphaericus C3-41] gi|168993000|gb|ACA40540.1| DNA topoisomerase 4 subunit B [Lysinibacillus sphaericus C3-41] Length = 667 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 265/661 (40%), Positives = 387/661 (58%), Gaps = 16/661 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ S Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 11 TNKQSPSVYNDDAIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALAGFG 69 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V ++ D S +V D GRG+PT +H + G E+I T LHAGGKF Q YK SGGLH Sbjct: 70 SHIIVKIHKDQSISVRDFGRGMPTGMH-KMGKPTPEIIFTVLHAGGKFGQGGYKTSGGLH 128 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG SVVNALS++L++ I R+G Y F + G L G TGT V FLP Sbjct: 129 GVGSSVVNALSTFLEVTIHRDGKKYRQRFEHGGHPVTTLEEIGHTK-QTGTLVHFLPDET 187 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFSV FNYDTL RLRE +FL ++I LID+R E + FY+ GIEAFV+YL+ K Sbjct: 188 IFSVTKFNYDTLAERLRESAFLLKGLKIELIDER-EEGKNDVFFYENGIEAFVAYLNEEK 246 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 L ++G +D+I ++ A ++NDGY E +L F NN+ +DGGTH +G ++ALTR Sbjct: 247 DVLHP-VKYVEGIQDDIEVEFAFQYNDGYSETILSFVNNVRTRDGGTHETGAKAALTRVF 305 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVES 358 Y K K +++ G D REG +++S+++P+ +F QTK KL +SE RS V+S Sbjct: 306 NEYARKIGLLKDKDKNLEGTDIREGLAAIVSVRIPEHLLQFEGQTKGKLGTSEARSAVDS 365 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLAD 416 V++ + LEE+ + +V+K + A VR+AAR+AR+ +K L GKL Sbjct: 366 VVSEQILYVLEENAELSASLVRKAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTP 425 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+ K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ ++ ++EI T Sbjct: 426 AQSRNAAKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIST 485 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I A+G G+G F + Y+K++IMTDAD DGAHI+ LLLTFF+R M LI G ++I Sbjct: 486 IIHAIGAGVG-TDFAVEDSAYNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFI 544 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY ++ + + ++Y E L+ + ++ + + + ++ Sbjct: 545 ALPPLYKVSKGTGKKEVIEYAWTENDLQKAIKQVGKGYILQRYKGLGEMNADQLWDTTMN 604 Query: 593 -DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 D + ++ + ++ + + AN L + E+ Sbjct: 605 PDTRTLIRVTIEDGARAERRVTTLMGDKVEPRRKWIEANVDFGMEDDANILENEFIQQEE 664 Query: 652 S 652 Sbjct: 665 G 665 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 11/260 (4%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 R + ++ + + ++ L S+N ++ ++ Sbjct: 388 KAIRAQQVREAARKAREDARNGKKNKKGSTILSGKLTPAQSRN---AAKNELYLVEGDSA 444 Query: 603 DFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + QA++ V N E + ++ +++ ++ I + + Sbjct: 445 GGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEISTIIHAIGAGVGTDFAVEDSA 504 Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI--- 716 + +V + F + I + ++ + + K ++ Sbjct: 505 YNKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVFIALPPLYKVSKGTGKKEVIEY 564 Query: 717 -TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L I +G KG +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D ++A+ Sbjct: 565 AWTENDLQKAIKQVG-KGYILQRYKGLGEMNADQLWDTTMNPDTRTLIRVTIEDGARAER 623 Query: 776 LFSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ N Sbjct: 624 RVTTLMGDKVEPRRKWIEAN 643 >gi|73916266|gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK+IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKLIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|73916248|gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVIKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414] gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414] Length = 645 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 293/591 (49%), Positives = 394/591 (66%), Gaps = 9/591 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L G+ I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIG-TTGPRGLHHLVYEVVDNSIDEALAGHCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPTD H G SA E ++T LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINADGSVTVTDDGRGIPTDTHSRTGKSALETVLTVLHAGGKFGGGGYKVSGGLHGVGLS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS L++ + R+ ++ + G+ L TGT + F P S IF + Sbjct: 121 VVNALSDVLEVTVWRDNKVHVQRYERGVPVTELQAKPDKEGKTGTSINFKPDSQIFINSV 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y T+ RLREL++LN+ V+I D R S PR T YKGGI+ +++Y++R K Sbjct: 181 EFDYITIAGRLRELAYLNAGVKIIFGDHRLELLKSDTPRIETYEYKGGIKEYIAYMNRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I + G R+N+ ++++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEIIYVHGERNNVQVEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNAIARKRNKIKENESNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + LS +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLSEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + E+ +LIT Sbjct: 421 RDPSESEIFIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDAKIYKNNEVQSLIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG G+ D FD +LRYH+I+IMTDADVDGAHIRTLLLTFF+R +LI GF+YI P Sbjct: 481 ALGLGVKGDEFDSTQLRYHRIVIMTDADVDGAHIRTLLLTFFYRYQRALIEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PL+ + RGK+ +Y E L+ YL + G + L + Sbjct: 541 PLFKVERGKNHEYCYSERELQQYLGTLPSNANYNIQRFKGLGEMMPQQLWD 591 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 4/137 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729 V + F + + I I + + + L + ++ Sbjct: 509 VDGAHIRTLLLTFFYRYQRALIEQGFIYIACPPLFKVERGKNHEYCYSERELQQYLGTLP 568 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 ++QR+KGLGEM QLW+TT+NP++R + +V+I DA++AD +F+ LMGD V PRR Sbjct: 569 SNANYNIQRFKGLGEMMPQQLWDTTMNPESRKMKQVEIEDAAEADRIFTILMGDRVAPRR 628 Query: 790 EFIQENSLPSA---LDI 803 EFI+ LDI Sbjct: 629 EFIETYGSKLNFTDLDI 645 >gi|30021698|ref|NP_833329.1| DNA topoisomerase IV subunit B [Bacillus cereus ATCC 14579] gi|228959781|ref|ZP_04121456.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047280|ref|ZP_04192879.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676] gi|229128869|ref|ZP_04257845.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4] gi|29897253|gb|AAP10530.1| Topoisomerase IV subunit B [Bacillus cereus ATCC 14579] gi|228654574|gb|EEL10436.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-Cer4] gi|228724022|gb|EEL75368.1| DNA topoisomerase 4 subunit B [Bacillus cereus AH676] gi|228799911|gb|EEM46853.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 654 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N GI L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPVTTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|139439853|ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC 25986] gi|133774781|gb|EBA38601.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC 25986] Length = 650 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 283/649 (43%), Positives = 382/649 (58%), Gaps = 16/649 (2%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T SGLHH+++E++DN++DE++ G+ I VT++ D S TV DNGRGIP D H Sbjct: 1 MYIGSTSA-SGLHHLVWEIVDNSVDEAMAGFCTEIQVTVHADNSITVVDNGRGIPVDEHP 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + I EV+MT LHAGGKF+ +YKVSGGLHGVG+SVVNALS + ++++R+GN YEM Sbjct: 60 VKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGISVVNALSKRVVVQVRRDGNTYEME 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G + V G + TGT VTF P +IF +++DTL +RL+E +FLN +++I Sbjct: 120 FSRGKTVKKMEVVG-TSDSTGTTVTFWPDDEIFETCIYDFDTLHNRLQETAFLNKNLKIV 178 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGSRD-------NISID 260 L D+R P Y+GGI FV +L+ K + PI I+G D ++ Sbjct: 179 LTDEREATPHVEEFCYEGGIIDFVKFLNEGKDVPEAFKEPIYIEGKSDPDAPVAKMGEVE 238 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 ++++WN GY ENV+ F N+I +GG HL G R+ALTR I Y K K+ ++ GD Sbjct: 239 VSLQWNSGYGENVMSFANDIYTPEGGMHLEGFRTALTRVINDYARKQNLLKEKDANLTGD 298 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 D REG ++V+S+K+PDP+F QTK KL SS +R++ V DGL +LEEHP A+ IVK Sbjct: 299 DVREGLSAVISVKLPDPQFEGQTKAKLGSSYMRALTLKIVTDGLVDYLEEHPKPAREIVK 358 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K A R+AAR+AR+ TRRK +L+ ASLPGKLADCS RD + +ELF+VEGDSAGGSAK Sbjct: 359 KAQQACKARNAARKAREATRRKSLLETASLPGKLADCSVRDAELTELFIVEGDSAGGSAK 418 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI-----GQDSFDINKL 495 GR R+ QAILPLRGKILNVER + SS I +LITA+G G+ FDI K Sbjct: 419 DGRRRDIQAILPLRGKILNVERVGDHRAFSSDTIQSLITAIGCGVTTSAGDGGDFDITKA 478 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555 RYHKIIIMTDADVDGAHIR LLLTFF++ M LI G++Y+ PP++GI + YV Sbjct: 479 RYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAGYVYVACPPIFGIKVRNKIHYVYP 538 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 + I + + + L D K D + Sbjct: 539 NGRQPEDEILRDTIQSLGLNPDDNDEDGKAKDGKITKKRKGYTVQRYKGLGEMDPKQLAS 598 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILV 664 + I ++ + A R +E + + + D Sbjct: 599 TTMDPKTRILQRVSIEDAVVADRAVRELMGSEVGYRREYIEKHAHDARF 647 Score = 129 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 1/73 (1%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 RKG ++QRYKGLGEM+ QL TT++P TR L RV I DA AD LMG EV RRE Sbjct: 577 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVSIEDAVVADRAVRELMGSEVGYRRE 636 Query: 791 FIQENSLPSA-LD 802 +I++++ + LD Sbjct: 637 YIEKHAHDARFLD 649 >gi|228478351|ref|ZP_04062959.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126] gi|228250030|gb|EEK09300.1| DNA topoisomerase IV, B subunit [Streptococcus salivarius SK126] Length = 649 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 278/649 (42%), Positives = 399/649 (61%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + ++LA+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L I G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|116492722|ref|YP_804457.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745] gi|116102872|gb|ABJ68015.1| DNA topoisomerase IV subunit B [Pediococcus pentosaceus ATCC 25745] Length = 679 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 269/684 (39%), Positives = 391/684 (57%), Gaps = 15/684 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ +SYD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MA-KTSKTSYDDSSIQVLEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+ D S TV D+GRG+P +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GKEINVTIQADNSITVVDHGRGMPVGMH-KSGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L + I R+ YE +F+N G L G N GT VTF P Sbjct: 118 HGVGASVVNALSEKLTVEIVRDKVKYEETFVNGGHPVGTLKKVGKTTNKNGTTVTFKPDK 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF+ FN++TL RLRE +FL V+I+L D+R + Y GI+ FV YL+ Sbjct: 178 EIFTTTVFNFNTLAVRLRESAFLLRGVKITLTDRREGHEQHEEYLYDEGIKQFVDYLNED 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + + G++ I +++A ++NDGY E +L F NN+ +DGGTH G+RS T+ Sbjct: 238 -KDTLGNIMYFDGTKKGIEVEVAGQYNDGYSETILSFVNNVRTRDGGTHEVGMRSGWTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + K K+ +++ G D REG ++V+S+++P+ F QTKEKL + E R +V+ Sbjct: 297 FNEFARKMGLLKEKDKNLEGSDVREGLSAVISVRIPEELLEFEGQTKEKLGTPEARPIVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ L +L E+ A+ +V+K ++A R AAR+ARD T ++ L GKL Sbjct: 357 AIVSEQLGFFLMENGEFAQQLVRKAINAREARVAARKARDESRTGKRKKKQERILSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ KK+ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+ ++ ++EI Sbjct: 417 PAQSKNSKKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F++ Y K+IIMTDAD DGAHI+TLLLTFF++ M +I G +Y Sbjct: 477 TIIYTIGAGVG-TEFNVQDSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + + Y +E LE ++ F + + + Sbjct: 536 IALPPLYKLQKGLNKKVKIAYAWTDEELESVSKQMGRGFSLQRFKGLGEMNADQLWETTM 595 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA-SKLANRLNFIAEKSE 650 + + ++ + + + V E NV+ + + L+ A K E Sbjct: 596 NPETRTLVRVRIDDDTLAERRVTTLMGDKVEPRRKWIESNVAFTLEEDGSILDNEAVKHE 655 Query: 651 KSWHGSINNSDILVKRIARGVQEQ 674 N S+ + I ++ Sbjct: 656 HEAGDPTNTSNETFEEIKLDIENN 679 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 3/262 (1%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + + + E + +E L SKN +N + Sbjct: 374 AQQLVRKAINAREARVAARKARDESRTGKRKKKQERILSGKLTPAQSKNSKKNELFLVEG 433 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + K + V N E + ++ ++ + I ++ Sbjct: 434 DSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTIIYTIGAGVGTEFNVQ 493 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715 +N D ++ + F + I + +I + L K+K Sbjct: 494 DSNYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMIDAGKIYIALPPLYKLQKGLNKKVK 553 Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+++ +G S+QR+KGLGEMNA QLWETT+NP+TR+L+RV+I D + A Sbjct: 554 IAYAWTDEELESVSKQMGRGFSLQRFKGLGEMNADQLWETTMNPETRTLVRVRIDDDTLA 613 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I+ N Sbjct: 614 ERRVTTLMGDKVEPRRKWIESN 635 >gi|157151650|ref|YP_001450529.1| DNA topoisomerase IV subunit B [Streptococcus gordonii str. Challis substr. CH1] gi|157076444|gb|ABV11127.1| DNA topoisomerase IV, B subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 649 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 273/623 (43%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TVSD+GRG+P +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVSDHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|307706371|ref|ZP_07643183.1| DNA gyrase, B subunit [Streptococcus mitis SK321] gi|307618289|gb|EFN97444.1| DNA gyrase, B subunit [Streptococcus mitis SK321] Length = 648 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDTE-RTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPDHRLMARVSVDDAAEADKI 621 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++PD Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPD 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|225861290|ref|YP_002742799.1| DNA gyrase subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298255372|ref|ZP_06978958.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503188|ref|YP_003725128.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|73916290|gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916294|gb|AAZ93015.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916296|gb|AAZ93016.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|225727003|gb|ACO22854.1| DNA gyrase, B subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238783|gb|ADI69914.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 648 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F+P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R++L Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTSL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|148992476|ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68] gi|149021676|ref|ZP_01835707.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72] gi|168489810|ref|ZP_02714009.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195] gi|237649436|ref|ZP_04523688.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974] gi|307127642|ref|YP_003879673.1| DNA gyrase subunit B [Streptococcus pneumoniae 670-6B] gi|73916238|gb|AAZ92987.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916272|gb|AAZ93004.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916274|gb|AAZ93005.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916292|gb|AAZ93014.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916324|gb|AAZ93030.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147928793|gb|EDK79806.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68] gi|147930137|gb|EDK81123.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72] gi|183571773|gb|EDT92301.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195] gi|301793963|emb|CBW36359.1| DNA gyrase subunit B [Streptococcus pneumoniae INV104] gi|306484704|gb|ADM91573.1| DNA gyrase, B subunit [Streptococcus pneumoniae 670-6B] gi|332073065|gb|EGI83544.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17570] gi|332204817|gb|EGJ18882.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47901] Length = 648 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F+P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|154506273|ref|ZP_02043011.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149] gi|153793412|gb|EDN75832.1| hypothetical protein RUMGNA_03815 [Ruminococcus gnavus ATCC 29149] Length = 650 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 254/625 (40%), Positives = 362/625 (57%), Gaps = 15/625 (2%) Query: 3 DNI-QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +N+ ++++YDADSI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G+ Sbjct: 9 ENMGKSNTYDADSISVLEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGFC 67 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I VTL DGS TV D+GRG+P +H++ GISAA ++ T LHAGGKF+ +YK SGGLH Sbjct: 68 KNIHVTLEKDGSATVEDDGRGVPVGMHQK-GISAARLVYTTLHAGGKFDDSAYKTSGGLH 126 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFL 176 GVG SVVNALS ++ ++I REG I+ + G+ L G TGT+V FL Sbjct: 127 GVGSSVVNALSVYMDVQISREGYIHHDRYERGVPVVELEDGLLPTIGKT-RKTGTKVNFL 185 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P IF F + ++ RL E ++LN + I DKR I GI F+ L Sbjct: 186 PDDTIFEKTKFRAEEVKSRLHETAYLNPELTIVFDDKRPDSQEHIEYHEPDGILGFIRDL 245 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 ++ K+ L PI +G+ + I ++ A ++ + +HENVL F NNI +GGTHL+G ++ Sbjct: 246 NQKKEVLH-DPIYFKGTAEGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTF 304 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T + Y + K+ + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 305 TTVMNQYARELGILKEKDSNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKAT 364 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 D + + + + K ++ A+ +R +A+ K GKLA+ Sbjct: 365 GKVTGDEIVLYFDRNVETLKKVLSCAEKAAKIRKTEEKAKTNLLTKQK-YSFDSNGKLAN 423 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C RD KK E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T Sbjct: 424 CESRDAKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKT 483 Query: 477 LITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 +I A G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G Sbjct: 484 MINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGH 543 Query: 534 LYIIKPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +YI PPLY + + +Y+ D+++LE Y ++ + + + ++ Sbjct: 544 VYIAMPPLYKVMPKKGEEEYLYDDKALEKYRRTHDGGFTLQRYKGLGEMDADQLWETTLN 603 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAV 617 +I KL++ E + Sbjct: 604 PETRILKLVEIEDARMASGVTEMLM 628 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 43/71 (60%), Positives = 51/71 (71%) Query: 733 GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 G ++QRYKGLGEM+A QLWETTLNP+TR L V+I DA A + LMG EV PRR FI Sbjct: 580 GFTLQRYKGLGEMDADQLWETTLNPETRILKLVEIEDARMASGVTEMLMGTEVPPRRAFI 639 Query: 793 QENSLPSALDI 803 EN+ + LDI Sbjct: 640 YENATEAELDI 650 >gi|78707341|gb|ABB46477.1| DNA gyrase subunit B [Acholeplasma brassicae] Length = 591 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 270/570 (47%), Positives = 379/570 (66%), Gaps = 9/570 (1%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T GE GLHH+++E++DN+IDE + GYAD IT+ L + V+DNGRGI Sbjct: 1 VRKRPGMYIGST-GERGLHHLVWEIVDNSIDECMAGYADEITIELLPNNIVKVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P DLH + A E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNAL+ W ++ I R+G Sbjct: 60 PVDLHPKTHRPAVETILTVLHAGGKFDGKSYKVSGGLHGVGSSVVNALTVWFRVTIARDG 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 +Y+ + G+ L V G + + TGT + FL +IF + ++++ L++R++EL+FL Sbjct: 120 KLYQQEYKRGVPQYDLKVIGESSH-TGTVIEFLADDEIFKEVNTYDFERLRNRIQELAFL 178 Query: 203 NSSVQISLIDKR---SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259 N +V+I++ D+R + + + Y+GGI +V +L+ K+ + ++ I I+ D I++ Sbjct: 179 NRNVKINISDQRDPKTEKHVYYSYQYEGGIIEYVHFLNTSKQEVNKTVIYIEKEIDGITV 238 Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319 +LA+++N Y N+ F NNI +GG H G + ALTR + Y ++ K S IG Sbjct: 239 ELALQYNSDYSTNLFSFANNIHTHEGGMHEDGFKLALTRVLGRYAQEQNILK-KDESFIG 297 Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379 +D REG T+++SIK PDP+F QTK KL + EVR + + L +L E+P +AK I+ Sbjct: 298 EDTREGLTAIVSIKHPDPQFEGQTKTKLGNPEVRQITSQITGEILERYLMENPADAKAII 357 Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 +K+L AS R AAR+AR+ TRRK LD+ KLADC + P+ SE+++VEGDSAGGSA Sbjct: 358 EKILMASRARIAARKAREATRRKSPLDMLGFASKLADCRNKSPEISEIYIVEGDSAGGSA 417 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499 KQGR E QAILPLRGK+LNVE++R DK+LS++EI ++I A GTGIG+D FD K RYHK Sbjct: 418 KQGRDSEFQAILPLRGKVLNVEKSRLDKILSNKEILSMIQAFGTGIGED-FDAAKARYHK 476 Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559 I+IMTDADVDGAHIRTLLLTF +R + LI G++YI +PPLY + GK ++YV DEE L Sbjct: 477 IVIMTDADVDGAHIRTLLLTFLYRHLKGLIDMGYVYIAQPPLYKVQSGKKVEYVYDEERL 536 Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRN 589 ++ G ++ L Sbjct: 537 PK-VLEAFGGRPQIQRYKGLGEMNPEQLWE 565 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 L + +G K++ L + GR +QRYKGLGEMN QLWETT++P TR Sbjct: 516 PPLYKVQSGKKVEYVYDEERLPKVLEAFGGR--PQIQRYKGLGEMNPEQLWETTMDPTTR 573 Query: 761 SLLRVKITDASQADDLFS 778 +LLRV + DA AD +FS Sbjct: 574 TLLRVSLQDAMNADQVFS 591 >gi|312863196|ref|ZP_07723434.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396] gi|311100732|gb|EFQ58937.1| DNA topoisomerase IV, B subunit [Streptococcus vestibularis F0396] Length = 649 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 393/623 (63%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNNDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+GN+Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGNVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + +++A+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L I G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKPAPRRQWIEDN 638 >gi|218898691|ref|YP_002447102.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842] gi|228902097|ref|ZP_04066261.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222] gi|228966492|ref|ZP_04127545.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|229075491|ref|ZP_04208480.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18] gi|229098040|ref|ZP_04228990.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29] gi|229117058|ref|ZP_04246440.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3] gi|218543471|gb|ACK95865.1| DNA topoisomerase IV, B subunit [Bacillus cereus G9842] gi|228666462|gb|EEL21922.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-3] gi|228685477|gb|EEL39405.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-29] gi|228707740|gb|EEL59924.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock4-18] gi|228793214|gb|EEM40764.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar sotto str. T04001] gi|228857523|gb|EEN02019.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 4222] Length = 654 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 265/663 (39%), Positives = 399/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|229104127|ref|ZP_04234801.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28] gi|228679334|gb|EEL33537.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock3-28] Length = 654 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 265/663 (39%), Positives = 399/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + F + + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FAVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNANQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFAVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA+QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNANQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|240146989|ref|ZP_04745590.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] gi|257200860|gb|EEU99144.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82] Length = 640 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 256/621 (41%), Positives = 358/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + YD SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G D I Sbjct: 3 KTGGYDESSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGACDTIC 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGSCTV DNGRG+P +H + G+SAA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VTLEADGSCTVEDNGRGVPVGMHAK-GVSAARIVYTTLHAGGKFDDSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+ + + I R+G I+ + GI L G TGT+V FLP + Sbjct: 121 SVVNALSTHMDVWISRDGYIHHDGYERGIPVVELENGLLPTIGKTK-KTGTKVNFLPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F D ++ R+ E ++LN ++ I DKR PE I + GI FV L++ Sbjct: 180 IFEKTRFKEDEVKSRMHETAYLNPALTIIYEDKRGPEVEHIVYHEEEGIIGFVKDLNKKN 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L + +G +D I+++ A ++ + +HEN+L F NNI +GGTH++G ++ T I Sbjct: 240 EVLH-DVVYFKGEQDGITVEAAFQYTNEFHENILGFCNNIFNAEGGTHITGFKTVFTTVI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K+ + G D R G T+++SIK PDPRF QTK KL + + V Sbjct: 299 NSYARELGILKEKDSNFTGADVRNGMTAIVSIKHPDPRFEGQTKTKLDNQDAARVTAKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D + + +++ K ++ A+ +R RA+ K S GKLA+C R Sbjct: 359 GDEIQLYFDKNLEVLKTVISCAEKAAKIRKTEERAKTNLLTKQKFSFDS-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASICEIFIVEGDSAGGSAKTARDRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+ Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY I +Y+ D+ +LE Y N + ++ + + ++ ++ + Sbjct: 538 MPPLYKAIPSKGEEEYLYDDAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 I K I+ E + Sbjct: 598 ILKRIEIEDGRMASDITELLM 618 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 42/98 (42%), Positives = 63/98 (64%), Gaps = 1/98 (1%) Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 ++ G++ + + L+ + ++QRYKGLGEM+A QLWETTLNP+TR L R+ Sbjct: 544 AIPSKGEEEYLYD-DAALERYRRNHKSNFTLQRYKGLGEMDAEQLWETTLNPETRILKRI 602 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +I D A D+ LMG++V PR+ FI E++ +ALDI Sbjct: 603 EIEDGRMASDITELLMGNDVPPRKMFIYEHAKDAALDI 640 >gi|306829208|ref|ZP_07462398.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis ATCC 6249] gi|304428294|gb|EFM31384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus mitis ATCC 6249] Length = 648 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQNS---SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNQQAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRCGHVVADLEVVGDT-DKTGTTVHFTP 178 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 +IF+ F+++ L R++EL+FLN ++IS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPEIFTETTTFDFEKLNKRVQELAFLNRGLRISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDKPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +D S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSDAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD+ K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVTKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L SK I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARHSEGRSKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-HSEGRSKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|183980040|ref|YP_001848331.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M] gi|183173366|gb|ACC38476.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M] Length = 692 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 270/652 (41%), Positives = 381/652 (58%), Gaps = 39/652 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A +I +L+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA Sbjct: 20 KKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYAT 78 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 + V L DGS V+DNGRGIP +H G +V+MT+LHAGGKF Y VSGGL Sbjct: 79 QVNVRLLDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGL 137 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L++ IKR+G + + L G A TGT + F D Sbjct: 138 HGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTGTTIRFWADPD 195 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214 IF +++++T+ RL+E++FLN + I+L D+R Sbjct: 196 IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAA 255 Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 + + T Y GG+ FV +++R K P+ QS + +G +++AM+WN GY Sbjct: 256 ESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVEIAMQWNGGYS 315 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+ Sbjct: 316 ESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVI 375 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+++ +P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK IV K + ++ R Sbjct: 376 SVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARL 435 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAI Sbjct: 436 AARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAI 495 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FD++KLRYHKI++M DADVDG Sbjct: 496 LPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIVLMADADVDG 554 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI NG +++ +PPLY + ++ + D L+ L Sbjct: 555 QHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTEPEFAYSDRERDGLLEAGLKA 614 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 615 GKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 664 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 607 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 665 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 666 SILMGEDVDARRSFITRNAKDVRFLDV 692 >gi|322372517|ref|ZP_08047053.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150] gi|321277559|gb|EFX54628.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C150] Length = 649 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 274/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FV+YL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEIREEFHYENGVQDFVTYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + +++A+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L + G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKPAPRRQWIEDN 638 >gi|228940682|ref|ZP_04103245.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973600|ref|ZP_04134182.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980158|ref|ZP_04140472.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407] gi|228779516|gb|EEM27769.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis Bt407] gi|228786061|gb|EEM34058.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818926|gb|EEM64988.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941316|gb|AEA17212.1| DNA topoisomerase IV subunit B [Bacillus thuringiensis serovar chinensis CT-43] Length = 654 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27] gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27] Length = 645 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 305/585 (52%), Positives = 413/585 (70%), Gaps = 4/585 (0%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y A +IQ+L+GLDAV+KRP MYIG T GLHH++YEV+DN++DE+L GYA I Sbjct: 13 MPEQNYGAQNIQVLEGLDAVRKRPGMYIGSTSA-RGLHHLVYEVVDNSVDEALAGYATHI 71 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V++N D S TV D+GRGIPT +H E G+SA E+++ +LHAGGKF YKVSGGLHGVG Sbjct: 72 EVSINPDNSVTVVDDGRGIPTGMH-ESGMSAVELVLMKLHAGGKFGGGGYKVSGGLHGVG 130 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS W K+++ + G + E+SF G + L G A TGT V F P ++IF Sbjct: 131 ISVVNALSEWTKVQVSQNGIVQEISFARGHKTSELHEIGKAE-GTGTTVIFKPDAEIFET 189 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++DTL+ RL+EL+FLN ++I+L D R EPR + Y+GG+ +F+++L+ +K+ + Sbjct: 190 TVFSFDTLKMRLQELAFLNKGLRITLSDLRLEEPRVESFHYEGGLVSFITFLNENKEAIN 249 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + I I+ ++D++ +D+A+++ND Y EN+L F NNI DGGTHLSG R+ALTR + Y Sbjct: 250 PTVINIENTKDDVVVDVALQYNDSYSENLLSFVNNINTIDGGTHLSGFRAALTRTLNDYG 309 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 KS K+ + ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ + + V +GL Sbjct: 310 RKSGLIKESESNLSGEDVREGLTAVVSVKVLEPQFEGQTKTKLGNSEVKGITDVIVTEGL 369 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + EEHP +AK I++K AS R+AAR+ARDLTRRK L+++SLPGKLADCSE+D Sbjct: 370 KTFFEEHPQDAKKIIEKATMASRAREAARKARDLTRRKNALEVSSLPGKLADCSEKDTSM 429 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +E++LVEGDSAGGSAKQGR R QAILPLRGKILNVE+AR DK+L++ EI ++ITA GTG Sbjct: 430 TEIYLVEGDSAGGSAKQGRDRRYQAILPLRGKILNVEKARLDKILANNEIRSMITAFGTG 489 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI K RY+KIIIMTDADVDGAHIRTLLLTFF+R M L+ G +YI +PPLY I Sbjct: 490 IG-DEFDITKSRYNKIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIYIAQPPLYQI 548 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +GKS YV + L L G ++ L Sbjct: 549 KKGKSHWYVYSDAELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWE 593 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 6/203 (2%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + + N E + + +++ + + + + + + Sbjct: 446 QGRDRRYQAIL---PLRGKILNVEKARLDKILANNEIRSMITAFGTGIGDEFDITKSRYN 502 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI-KITGPC 720 ++ V + F + + I L I G + Sbjct: 503 KIIIMTDADVDGAHIRTLLLTFFYRYMKPLVEEGHIY-IAQPPLYQIKKGKSHWYVYSDA 561 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + +GR G ++QRYKGLGEMN QLWETT+NPD R++L+V + D+ +AD +F+ L Sbjct: 562 ELTAKLDEVGRDGTTIQRYKGLGEMNPEQLWETTMNPDNRTILQVSLEDSIEADKIFTVL 621 Query: 781 MGDEVEPRREFIQENSLPS-ALD 802 MGD+VEPRR+FI++N+ LD Sbjct: 622 MGDKVEPRRKFIEDNAKYVRNLD 644 >gi|218235058|ref|YP_002368410.1| DNA topoisomerase IV subunit B [Bacillus cereus B4264] gi|229111021|ref|ZP_04240580.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15] gi|229146164|ref|ZP_04274539.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24] gi|218163015|gb|ACK63007.1| DNA topoisomerase IV, B subunit [Bacillus cereus B4264] gi|228637223|gb|EEK93678.1| DNA topoisomerase 4 subunit B [Bacillus cereus BDRD-ST24] gi|228672384|gb|EEL27669.1| DNA topoisomerase 4 subunit B [Bacillus cereus Rock1-15] Length = 654 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N G+ L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGVPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|320546627|ref|ZP_08040939.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus ATCC 9812] gi|320448682|gb|EFW89413.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus equinus ATCC 9812] Length = 649 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 270/623 (43%), Positives = 389/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V LN DGS TV D GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVILNQDGSVTVKDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTTVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D+R E + Y G++ FV YL+ Sbjct: 179 DDKIFSTTDFKFNTIAERLKESAFLLKDVTLTLTDERPEEAEHLEFHYVNGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L + G +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTPVIW-VTGEDQGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y KS K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGGGVGAD-FKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LE+ +++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + +N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGGGVGADFKVENSNY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 621 NVLMGDKVEPRRKWIEDN 638 >gi|322385164|ref|ZP_08058811.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus ATCC 51100] gi|321270788|gb|EFX53701.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus cristatus ATCC 51100] Length = 649 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 272/623 (43%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLRNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYSDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|157363918|ref|YP_001470685.1| DNA gyrase, B subunit [Thermotoga lettingae TMO] gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO] Length = 630 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 277/629 (44%), Positives = 380/629 (60%), Gaps = 25/629 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y A+SI+ILKGL+AV+ RP MYIG T G+SGLHH++YE++DN+IDE + G+ + I VT Sbjct: 2 TDYKAESIRILKGLEAVRLRPGMYIGST-GKSGLHHLVYEIVDNSIDEVMAGFCNTIRVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L D + + DNGRGIP D H E G SA EV+MT LHAGGKF++ YKVSGGLHGVG SV Sbjct: 61 LFEDNTVEIEDNGRGIPVDTHPETGRSALEVVMTTLHAGGKFSKNIYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS L++ I +EG IY + G + V G GT V F P IFS+ F Sbjct: 121 VNALSEILEVWIHKEGKIYYQKYSRGFPQCEVTVIGETDKQ-GTIVRFKPDDQIFSILKF 179 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + D ++++LREL+FLN V+I + +TM Y+GG+ + YL +KP+ Sbjct: 180 DPDLIENKLRELAFLNPQVKIIF--EDLANEYTVTMHYEGGLREYARYLASGRKPIH-ET 236 Query: 248 IRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I + G D I + +A+ + D Y E + + NNI D GTH++ ++ T+ + Y Sbjct: 237 IEVSGELDEIIVKIAIMYTDSYEEEKIYSYANNIRTIDHGTHVTAFKNTFTKMLNEYARS 296 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K S G+D REG +++++ M +P F QTK KL S V + + LS Sbjct: 297 LGILK-KDESFSGEDVREGLIAIVTVLMKEPEFEGQTKSKLGSESAGIAVSRILKEKLSE 355 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE 426 + E + K+I++KVL R+AAR+AR+L RRK ++ SLPGKLADC + + SE Sbjct: 356 YFEVNKQVLKVILEKVLKTMRAREAARKARELARRKNAMENLSLPGKLADCVSSNVENSE 415 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 LF+VEGDSAGGSAKQ R RE QAILPLRGKILNVE++ K+L++++I +I A+GTGIG Sbjct: 416 LFIVEGDSAGGSAKQARDREYQAILPLRGKILNVEKSSMQKLLANEQIKDIIVAVGTGIG 475 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR 546 DSFD +KLRY KIIIMTDAD+DGAHIRTLLLTFFFR M LI +G +YI PPLY ++ Sbjct: 476 -DSFDSSKLRYGKIIIMTDADIDGAHIRTLLLTFFFRYMKPLIEDGRIYIAVPPLYKVSF 534 Query: 547 GKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN-------------FID 592 + YV EE + ++E G ++ L I+ Sbjct: 535 SSNSVYVYTEEDFQALRRELGEERKLEVQRYKGLGEMNPEQLWETTMNPETRKLIQVNIE 594 Query: 593 DALKIDKLIKDF---YPNHDKTFIEQAVI 618 +A + D L + P+ + FIE+ + Sbjct: 595 NAEEADALFEILMGESPSERRRFIERHAL 623 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 2/185 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + + + S+ S ++ + + Sbjct: 446 ILNVEKSSMQKLLANEQIKDIIVAVGTGIGDSFDSSKLRYGKIIIMTDADIDGAHIRTLL 505 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRY 739 F F I RI + + + + + + +G + + +QRY Sbjct: 506 LTFFFRYMKPLIEDGRIYIAVPPLYKVSFSSNSVYVYTEEDFQALRRELGEERKLEVQRY 565 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEMN QLWETT+NP+TR L++V I +A +AD LF LMG+ RR FI+ ++L Sbjct: 566 KGLGEMNPEQLWETTMNPETRKLIQVNIENAEEADALFEILMGESPSERRRFIERHALKV 625 Query: 800 A-LDI 803 LD+ Sbjct: 626 TYLDV 630 >gi|312193902|ref|YP_004013963.1| DNA gyrase, B subunit [Frankia sp. EuI1c] gi|311225238|gb|ADP78093.1| DNA gyrase, B subunit [Frankia sp. EuI1c] Length = 646 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 276/585 (47%), Positives = 376/585 (64%), Gaps = 12/585 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+ D ITVTL Sbjct: 2 AYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVSEVVDNSVDEALAGFCDTITVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V DNGRGIP +H E EV++T LHAGGKF+ SY VSGGLHGVG+SVV Sbjct: 61 LADGGVRVVDNGRGIPVGMHPTEKRPTVEVVLTILHAGGKFDSDSYAVSGGLHGVGISVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG--SAGNDTGTEVTFLPSSDIFSVQD 186 NALS+ +++ IK +G + + PL G TGT VTF ++IF + Sbjct: 121 NALSTKVEVEIKVDGFHWFQRYTAQRP-GPLEKRAPLKRGERTGTTVTFWADAEIFETTE 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 + Y+TL RL+E++FLN + ISL D+R+ EP E+T Y+ G+ FV++L+ K+P+ ++ Sbjct: 180 YKYETLYRRLQEMAFLNKGISISLRDERAEEPVEVTFKYENGLADFVAHLNATKEPIHKT 239 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + ++ I ++AM+WN GY+E+V F N I +GGTH G R+ALT + Y ++ Sbjct: 240 IVALEAKGKGIEAEVAMQWNAGYNESVYTFANTINTHEGGTHEEGFRAALTSAVNVYAKE 299 Query: 307 SFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 K K + GDD REG T+++S+K+ +P+F QTK KL ++E + V+ Sbjct: 300 QNLLKPVKAGAKSPDERLSGDDIREGLTAIISVKLSEPQFEGQTKTKLGNTEAKKFVQEM 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 L W + + +EA+ IV K LDA R AAR ARDLTRRKG+L LPGKL+DC Sbjct: 360 CYSALRDWFDANRVEARSIVGKALDAQRARIAARAARDLTRRKGLLGGTGLPGKLSDCQY 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP++ EL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + E+ LI Sbjct: 420 TDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQALIQ 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTGI D FDI KLRYHKI++M DADVDG HIRTLLLT FR M L+ G +++ +P Sbjct: 480 ALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVFLAQP 538 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 PLY I G+ + D L+ + + +L D+ Sbjct: 539 PLYKIKWGREDWEYAYSDRERDGLLERGVEAGRKLPKDAIQRFKG 583 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 3/85 (3%) Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LL+ GRK ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS Sbjct: 562 LLERGVEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSV 621 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 LMG++V+ RR FIQ N+ LDI Sbjct: 622 LMGEDVDARRSFIQRNAKDVRFLDI 646 >gi|295110276|emb|CBL24229.1| DNA topoisomerase IV subunit B [Ruminococcus obeum A2-162] Length = 641 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 247/623 (39%), Positives = 356/623 (57%), Gaps = 23/623 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY +I Sbjct: 3 KKETYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSLIH 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGSCTV+DNGRGIP D+H++ G+SA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VVLEKDGSCTVTDNGRGIPVDMHEK-GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L +++ R+G ++ + G+ L G +TGT + FLP + Sbjct: 121 SVVNALSTYLDIKVSRDGYVHHDHYEQGVPTLELENGLLPKLGRTK-ETGTCINFLPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN + I D R E + GI ++ ++ Sbjct: 180 IFEKTRFSATDVKSRLHETAYLNPELTIVFEDLRGTETVKEEYHEPEGIVGYIQDMNHST 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L P+ ++G D I +++A ++ + + ENVL F NNI +GGTHL+G ++ T + Sbjct: 240 EALH-EPVYLKGEADGIQVEVAFQYTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + G D R G T+V+SIK P PRF QTK KL + + + Sbjct: 299 NTYAREIGVLKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAAKATGKVL 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + + + K I+ A+ +R RA+ K S GKLA+C ++ Sbjct: 359 GEQLVLYFDRNLETLKTILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DPAQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI+KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 478 FGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y G + L Sbjct: 538 MPPLYKAMPKKGPEEYLYDDKALEKYRKTHKPGSFTLQRYKGLGEMDAEQLW-------- 589 Query: 597 IDKLIKDFYPNHDKTFIEQAVIS 619 + + + IE A ++ Sbjct: 590 -ETTLNPETRRMKRVEIEDARLA 611 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 51/69 (73%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA A + LMG EV PR+ FI E Sbjct: 573 TLQRYKGLGEMDAEQLWETTLNPETRRMKRVEIEDARLASSVTEVLMGSEVPPRKAFIYE 632 Query: 795 NSLPSALDI 803 ++ + LD+ Sbjct: 633 HAADAELDV 641 >gi|15900699|ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4] gi|15902759|ref|NP_358309.1| DNA gyrase subunit B [Streptococcus pneumoniae R6] gi|111658143|ref|ZP_01408840.1| hypothetical protein SpneT_02000668 [Streptococcus pneumoniae TIGR4] gi|116516156|ref|YP_816203.1| DNA gyrase subunit B [Streptococcus pneumoniae D39] gi|149007692|ref|ZP_01831309.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74] gi|168486180|ref|ZP_02710688.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00] gi|225856480|ref|YP_002737991.1| DNA gyrase subunit B [Streptococcus pneumoniae P1031] gi|61225463|sp|P0A4L9|GYRB_STRPN RecName: Full=DNA gyrase subunit B gi|61225464|sp|P0A4M0|GYRB_STRR6 RecName: Full=DNA gyrase subunit B gi|14972283|gb|AAK74943.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4] gi|15458306|gb|AAK99519.1| DNA gyrase [Streptococcus pneumoniae R6] gi|73916240|gb|AAZ92988.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916246|gb|AAZ92991.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916250|gb|AAZ92993.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916256|gb|AAZ92996.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916258|gb|AAZ92997.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916270|gb|AAZ93003.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916328|gb|AAZ93032.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916336|gb|AAZ93036.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916346|gb|AAZ93041.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916348|gb|AAZ93042.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|116076732|gb|ABJ54452.1| DNA gyrase, B subunit [Streptococcus pneumoniae D39] gi|147760847|gb|EDK67818.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74] gi|183570816|gb|EDT91344.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00] gi|225726173|gb|ACO22025.1| DNA gyrase, B subunit [Streptococcus pneumoniae P1031] Length = 648 Score = 562 bits (1448), Expect = e-157, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|194467407|ref|ZP_03073394.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23] gi|194454443|gb|EDX43340.1| DNA gyrase, B subunit [Lactobacillus reuteri 100-23] Length = 649 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%) Query: 1 MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 MS+ Q YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN I Sbjct: 1 MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE+L G+ D I V +N D S TV DNGRGIP D KE G SA E + T LHAGGKF Sbjct: 60 DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171 YKVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + + V G + GT Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179 Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 V F P +IF +N TL RLREL+FLN ++I++ D R + Y+GGI Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKEFHYEGGIR 239 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +V YL+ + L PI ++G ++I++++++++ D Y N+L FTNNI +GGTH + Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S Sbjct: 300 GFKMALTRVINDYGHKAGVLKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++L Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+ Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI +L TALGTG G D FDI K YHK+IIMTDADVDGAHIRTLLLT F+R M +I Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +G++YI +PPLY + +GK ++Y+ +E LE + + S + + G + L Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F LMG +V PRR+FI++N Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640 Query: 796 SLPS-ALD 802 + LD Sbjct: 641 AKFVENLD 648 >gi|15790024|ref|NP_279848.1| DNA gyrase subunit B [Halobacterium sp. NRC-1] gi|10580452|gb|AAG19328.1| DNA gyrase subunit B [Halobacterium sp. NRC-1] Length = 611 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 280/562 (49%), Positives = 371/562 (66%), Gaps = 5/562 (0%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG TD GLHH++YEV+DN+IDE+L GY D I VTL+ DGS +V+D+GRGIP H+ Sbjct: 1 MYIGSTDA-RGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHE 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 E A EVI+T LHAGGKF+ KSY+VSGGLHGVGVSVVNALS L + + R+G Y Sbjct: 60 EYDRPAVEVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQ 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F G L G + +D+GT + F P S+IF +++ TL++RLREL+FLNS V+I+ Sbjct: 120 FERGEPVTDLQHVGDS-DDSGTLIRFRPDSEIFETTAYDFSTLENRLRELAFLNSGVEIT 178 Query: 210 LIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY 269 L D+R EP + T Y+GGI FV YL+ + L I QG D IS+++AM+ ++ Sbjct: 179 LTDERGDEPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGISVEIAMQASEDV 238 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTS 328 + F NNI ++GGTHL+G ++ALTR + Y + + ++ GDD REG T+ Sbjct: 239 QSSTHAFANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLTA 298 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+S+K PDP+F QTK KL +SEVR +VE VNDGL + EE+P AK +V+ ++A+ Sbjct: 299 VISVKHPDPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAKA 358 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AA++A +LTRRK L SLPGKLADC + P+ +ELF+VEGDSAGGSAKQGR+ Q Sbjct: 359 RKAAKKAEELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQ 418 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPL GKILNVE+ R D++L E+ +ITALGTGIG D FDI++LRY II+MTDADV Sbjct: 419 AILPLGGKILNVEKHRLDRILEHDELRHIITALGTGIG-DEFDIDELRYENIIMMTDADV 477 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTLLLTFF+R M L+ G++Y +PPLY I + E E + Q Sbjct: 478 DGAHIRTLLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQCN 537 Query: 569 -SEEIELFCDSKGVISKNDLRN 589 + G ++ L + Sbjct: 538 GNPTQVQRFKGLGEMNPQQLWD 559 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 38/70 (54%), Positives = 53/70 (75%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QR+KGLGEMN QLW+TT++P+ R L R+ + DA+ AD +FS LMGD VEPR++FIQE Sbjct: 542 QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAADKMFSVLMGDAVEPRKQFIQE 601 Query: 795 NSLPSA-LDI 803 + + +DI Sbjct: 602 RAGDAEWVDI 611 >gi|148543248|ref|YP_001270618.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016] gi|184152660|ref|YP_001841001.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112] gi|227364311|ref|ZP_03848404.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3] gi|325683510|ref|ZP_08163026.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri MM4-1A] gi|148530282|gb|ABQ82281.1| DNA gyrase subunit B [Lactobacillus reuteri DSM 20016] gi|183224004|dbj|BAG24521.1| DNA gyrase subunit B [Lactobacillus reuteri JCM 1112] gi|227070624|gb|EEI08954.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri MM2-3] gi|324977860|gb|EGC14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri MM4-1A] Length = 649 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%) Query: 1 MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 MS+ Q YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN I Sbjct: 1 MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE+L G+ D I V +N D S TV DNGRGIP D KE G SA E + T LHAGGKF Sbjct: 60 DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171 YKVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + + V G + GT Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179 Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 V F P +IF +N TL RLREL+FLN ++I++ D R + Y+GGI Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLRQADHERKEFHYEGGIR 239 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +V YL+ + L PI ++G ++I++++++++ D Y N+L FTNNI +GGTH + Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S Sbjct: 300 GFKMALTRVINDYGHKAGILKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++L Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+ Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI +L TALGTG G D FDI K YHK+IIMTDADVDGAHIRTLLLT F+R M +I Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +G++YI +PPLY + +GK ++Y+ +E LE + + S + + G + L Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F LMG +V PRR+FI++N Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640 Query: 796 SLPS-ALD 802 + LD Sbjct: 641 AKFVENLD 648 >gi|259502126|ref|ZP_05745028.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri DSM 16041] gi|259169939|gb|EEW54434.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus antri DSM 16041] Length = 648 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 288/599 (48%), Positives = 395/599 (65%), Gaps = 13/599 (2%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MSD + S YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MSDEQKETKAQLASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I V +N D S TV DNGRGIP D+ + G A E + T LHAGGKF Y Sbjct: 60 EALAGFCTEINVEVNPDNSITVRDNGRGIPVDIQGQTGKPALETVFTILHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTE 172 KVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + V + GT Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVARQGKEYYMDFDHGHVKTAMKVINDHLPEDVHGTT 179 Query: 173 VTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F P IF +N TL +RLREL+FLN ++I++ DKR + + Y+GGI Sbjct: 180 VHFKPDPAIFRETTVYNIKTLTNRLRELAFLNKGLKITIEDKRDEDSQRQDFHYEGGIRH 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 +V YL+ K L + PI ++G + I++++++++ D Y +L FTNNI +GGTH +G Sbjct: 240 YVDYLNEDKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSELLTFTNNIHTYEGGTHETG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S+ Sbjct: 300 FKMALTRVINDYGHKANILKSNE-TLSGDDVREGMTAVVSIKHPDPQFEGQTKTKLGNSD 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++LP Sbjct: 359 ARTATDHVFAATFNRFLMEHPEEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLAD + +DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++ Sbjct: 419 GKLADNTSKDPSISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI +L TALGTG G+D FDI K YHK+IIMTDADVDGAHIRTLLLT +R M +I + Sbjct: 479 EEIRSLFTALGTGFGED-FDIEKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMRPMITH 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI +PPLY + +GK ++Y++ +E LE + + S + + G + L Sbjct: 538 GYVYIAQPPLYQVRQGKFVRYIESDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 54/68 (79%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRV++ DA QA+++F LMG +V PRR+FI++N Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPENRHLLRVQLDDAEQANEIFPMLMGTKVGPRRDFIEQN 639 Query: 796 SLPS-ALD 802 + LD Sbjct: 640 AKFVENLD 647 >gi|238810228|dbj|BAH70018.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 644 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 253/597 (42%), Positives = 371/597 (62%), Gaps = 13/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N+ + YDA +I++L+GL+AV+ RP MYIG T G GLHH+I+E++DN++DE++ G+ Sbjct: 1 MGGNM-SKEYDASNIKVLEGLEAVRVRPGMYIG-TTGIRGLHHLIWEIVDNSVDEAMAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ + +T+ DG V DNGRGIPT +H + G+S E ++T LHAGGKF+ SYKVSGGL Sbjct: 59 ANKVEITITKDGYIDVIDNGRGIPTAVHPKTGLSTVETVLTVLHAGGKFDSDSYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVG SVVN LS ++ +KR+G ++ F N G + L + DTGT + F P Sbjct: 119 HGVGASVVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I +++ + +++++LN ++I + D+R E +GGI +V L+ Sbjct: 179 FSIMDKNEWDKGVIVDHAKQIAYLNKGLRIIVNDERDKSREEYHF--EGGIVDYVKELNT 236 Query: 239 HKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +K + I +G + +++A+++N+ NV+ + NNI +GGTH SG Sbjct: 237 GQKLIHPDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFY 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 AL R + +Y + K ++ V +D REG +++S+K +P F QTK KL + + R Sbjct: 297 DALVRLVNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDAR 356 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V +D +L E+P EAK IV+K + A R A ARD RRK V D SLPGK Sbjct: 357 MAVNKVFSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGK 416 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS ++ + SEL++VEG+SAGGSAK GR+R QAILPLRGK++N E+ + K+ ++ E Sbjct: 417 LADCSSKNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAE 476 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +LITALGTG+G++ F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R LI GF Sbjct: 477 ILSLITALGTGVGEE-FNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGF 535 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589 +YI +PPLY I + K + Y ++ E+ + + ++++ G + L Sbjct: 536 IYIAQPPLYKIAQNKFIGYAYNDAQKEEIMQGLNQNQKVTVQRYKGLGEMDPEQLWE 592 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEM+ QLWETT++P R +L+V+I DA++AD F+ LMGDEV PRREFI+ Sbjct: 574 VTVQRYKGLGEMDPEQLWETTMDPVNRKMLQVQIEDAARADWAFTTLMGDEVLPRREFIE 633 Query: 794 ENSLPS-ALDI 803 +N+ +DI Sbjct: 634 QNAKYVKNIDI 644 >gi|148997114|ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70] gi|168492965|ref|ZP_02717108.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06] gi|168575469|ref|ZP_02721405.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016] gi|194396954|ref|YP_002037451.1| DNA gyrase subunit B [Streptococcus pneumoniae G54] gi|307067411|ref|YP_003876377.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200] gi|73916242|gb|AAZ92989.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916254|gb|AAZ92995.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916268|gb|AAZ93002.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147756814|gb|EDK63854.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70] gi|183577070|gb|EDT97598.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06] gi|183578470|gb|EDT98998.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016] gi|194356621|gb|ACF55069.1| DNA gyrase, B subunit [Streptococcus pneumoniae G54] gi|306408948|gb|ADM84375.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Streptococcus pneumoniae AP200] Length = 648 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKREGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|219668703|ref|YP_002459138.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense DCB-2] gi|219538963|gb|ACL20702.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense DCB-2] Length = 638 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 274/645 (42%), Positives = 399/645 (61%), Gaps = 19/645 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +++ Y+A+SIQ+L+GL+AV+KRP MYIG T G GLHH +E++DNAIDE+ G+ Sbjct: 1 MSMDLK---YNAESIQVLEGLEAVRKRPGMYIGST-GSKGLHHCAWEIIDNAIDEAGAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTLN DGS TV DNGRG+P D+H + I A + +LHAGGKF+ +SYK SGGL Sbjct: 57 CTRIEVTLNPDGSLTVLDNGRGVPIDIHPVKQIPAVRLAFEQLHAGGKFDGQSYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS++L + + REG I+ + + + G L + L V +GT+VTF P Sbjct: 117 HGVGASVVNALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDP 176 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--L 236 IF F +DTL+ RL EL+FLN + I L D+R E R T K G+ FV + Sbjct: 177 LIFKETTSFKFDTLRSRLMELAFLNPGLTIVLTDQR-KETRSETFQSKNGVIGFVEHLNK 235 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + P+ + PI +G +D + ++ A+++ DG E++ + NNIP +GGTH SG R+AL Sbjct: 236 ESDYNPVHKKPIFFKGEKDEVIVECAIQYTDGEDEHLRSYVNNIPTDEGGTHESGFRTAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T+ +Y +K+ K + S+IGDD ++G T VLS+K+ +P+F QTK KL ++EV VV Sbjct: 296 TKVFNAYGKKNN-IFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVV 354 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +S N+G+S + E++P AK + + L + R AA+RA++L ++ ++ +L GKLA Sbjct: 355 QSLTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAA 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CSE+D ++ELFLVEGDSAGGSAK GR R QAILPLRGK++N RA+ DK+L ++EI + Sbjct: 415 CSEKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRS 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+G GIG++ F+++K Y ++ IMTDAD+DGAHIR LLLTFF+R M LI G +YI Sbjct: 475 MITAIGAGIGKE-FEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYI 533 Query: 537 IKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 + PLY + +GK ++Y DE L+D + + G ++ L Sbjct: 534 AQAPLYKVEKEKGKVVRYAYDEGELKD-ALKELGKSAKLQRYKGLGEMNPEQLWET---- 588 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 ++ + + +E + E L + Sbjct: 589 -TLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMENIV 632 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 5/178 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + V ++ + + I K + +N + + + Sbjct: 455 VINTYRAKMDKVLENEEIRSMITAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I ++ L + + L D + +G K +Q Sbjct: 515 LTFFYRYMKPLILGGKVY-IAQAPLYKVEKEKGKVVRYAYDEGELKDALKELG-KSAKLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMN QLWETTLNP R +++V I DA +A+ LMG++V+PRREF+ EN Sbjct: 573 RYKGLGEMNPEQLWETTLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMEN 630 >gi|308190314|ref|YP_003923245.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER] gi|319777710|ref|YP_004137361.1| DNA gyrase subunit b [Mycoplasma fermentans M64] gi|307625056|gb|ADN69361.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER] gi|318038785|gb|ADV34984.1| DNA gyrase subunit B [Mycoplasma fermentans M64] Length = 640 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 251/591 (42%), Positives = 368/591 (62%), Gaps = 12/591 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + YDA +I++L+GL+AV+ RP MYIG T G GLHH+I+E++DN++DE++ G+A+ + + Sbjct: 2 SKEYDASNIKVLEGLEAVRVRPGMYIG-TTGIRGLHHLIWEIVDNSVDEAMAGFANKVEI 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIPT +H + G+S E ++T LHAGGKF+ SYKVSGGLHGVG S Sbjct: 61 TITKDGYIDVIDNGRGIPTAVHPKTGLSTVETVLTVLHAGGKFDSDSYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184 VVN LS ++ +KR+G ++ F N G + L + DTGT + F P I Sbjct: 121 VVNGLSDDFEVWVKRDGKLHYAHFNNGGKILQHLTILNEVDPQDTGTRIKFHPDFSIMDK 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 +++ + +++++LN ++I + D+R E +GGI +V L+ +K + Sbjct: 181 NEWDKGVIVDHAKQIAYLNKGLRIIVNDERDKSREEYHF--EGGIVDYVKELNTGQKLIH 238 Query: 245 QSPIRIQGS-----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 I +G + +++A+++N+ NV+ + NNI +GGTH SG AL R Sbjct: 239 PDVIYAEGEYSFQDSPAVQVEVAVQYNERITGNVVSYANNIITVEGGTHESGFYDALVRL 298 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y + K ++ V +D REG +++S+K +P F QTK KL + + R V Sbjct: 299 VNNYGTECGLIKTEEDKVTREDVREGIVAIISVKHTNPIFEGQTKGKLGNKDARMAVNKV 358 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +D +L E+P EAK IV+K + A R A ARD RRK V D SLPGKLADCS Sbjct: 359 FSDSFERFLNENPAEAKTIVQKTIFAKKSRLAGLAARDAARRKTVFDTGSLPGKLADCSS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ + SEL++VEG+SAGGSAK GR+R QAILPLRGK++N E+ + K+ ++ EI +LIT Sbjct: 419 KNAEISELYIVEGNSAGGSAKMGRNRMTQAILPLRGKVINAEKNQPKKVFANAEILSLIT 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALGTG+G++ F+INKLRYHKIIIMTDADVDGAHIRTLLLTFF+R LI GF+YI +P Sbjct: 479 ALGTGVGEE-FNINKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYFRPLIEYGFIYIAQP 537 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589 PLY I + K + Y ++ E+ + + ++++ G + L Sbjct: 538 PLYKIAQNKFIGYAYNDAQKEEIMQGLNQNQKVTVQRYKGLGEMDPEQLWE 588 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +++QRYKGLGEM+ QLWETT++P R +L+V+I DA++AD F+ LMGDEV PRREFI+ Sbjct: 570 VTVQRYKGLGEMDPEQLWETTMDPVNRKMLQVQIEDAARADWAFTTLMGDEVLPRREFIE 629 Query: 794 ENSLPS-ALDI 803 +N+ +DI Sbjct: 630 QNAKYVKNIDI 640 >gi|296167139|ref|ZP_06849546.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897461|gb|EFG77060.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 677 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 272/656 (41%), Positives = 381/656 (58%), Gaps = 41/656 (6%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116 GYA + V L DGS V D+GRGIP +H G +V+MT+LHAGGKF Y V Sbjct: 60 GYATKVDVRLLDDGSVEVVDDGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYTV 118 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS+ L++ IKR+G+ + + + L G A TGT + F Sbjct: 119 SGGLHGVGVSVVNALSTRLEVTIKRDGHEWFQYYDRAVP-GTLKQ-GEATKKTGTTIRFW 176 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214 +IF ++++T+ RL+E++FLN + I+L D+R Sbjct: 177 ADPEIFETTQYDFETVARRLQEMAFLNKGLTINLTDERVEQDEVVDEVVSDTAEAPKSAE 236 Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 + + T Y GG+ FV +++R K P+ QS I G +++AM+WN Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSVIDFDGKGTGHEVEIAMQWN 296 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G RSALT + Y + K ++ GDD REG Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK +V K + ++ Sbjct: 357 AAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTVVNKAVSSA 416 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DA Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG HI TLLLT FR M LI NG +++ +PPLY + ++ + D L+ Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTDPEFAYSDRERDGLLEA 595 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 L ++ + I + +D + + + ++ A + Sbjct: 596 GLKAGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 649 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 592 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 650 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677 >gi|125718052|ref|YP_001035185.1| DNA topoisomerase IV subunit B [Streptococcus sanguinis SK36] gi|125497969|gb|ABN44635.1| Topoisomerase IV subunit B, putative [Streptococcus sanguinis SK36] Length = 649 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 273/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMSDILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 43/73 (58%), Positives = 57/73 (78%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ + LMG Sbjct: 564 LDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRVNVLMG 623 Query: 783 DEVEPRREFIQEN 795 D+VEPRR++I++N Sbjct: 624 DKVEPRRKWIEDN 636 >gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413] gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413] Length = 645 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 295/639 (46%), Positives = 405/639 (63%), Gaps = 14/639 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPTD H G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 DINADGSVTVTDDGRGIPTDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS +++ + R+ ++ + GI L+ TGT V+F P S IF+ Sbjct: 121 VVNALSEVVEVTVWRDKKVHIQRYERGIPVTELIAKPYKEARTGTSVSFKPDSQIFTNSI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+I+ D R S P+ + YKGGI+ +++Y++R K Sbjct: 181 EFDYITLSSRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I +QG R+N+ I+++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEIIYVQGERNNVQIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+++ ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNTIARKRNKIKENEANLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPGIADAILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI LIT Sbjct: 421 RDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG G+ + FD +LRYH+IIIMTDADVDGAHIRTL+LTFF+R +LI GF+YI P Sbjct: 481 ALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + RG++ +Y E L+ + + G + L ++ Sbjct: 541 PLYKVERGRNYEYCYSERDLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + E I + + + + Sbjct: 596 PETRTLKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 634 Score = 158 bits (400), Expect = 4e-36, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 K E+ + I++ V + F + + I I + + Sbjct: 487 KGEEFDSTQLRYHRIII-MTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKV 545 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + L I ++QR+KGLGEM QLW TT+NP+TR+L RV+ Sbjct: 546 ERGRNYEYCYSERDLQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVE 605 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 I DA++AD +F+ LMGD V PRREFI+ LDI Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645 >gi|222153162|ref|YP_002562339.1| DNA topoisomerase IV subunit B [Streptococcus uberis 0140J] gi|222113975|emb|CAR42259.1| topoisomerase IV subunit B [Streptococcus uberis 0140J] Length = 650 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 272/649 (41%), Positives = 400/649 (61%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VT+N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIKVTINKDGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALS WL++ I R+G++Y+ F + G L G+ A + TGT VTF+P Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFEDGGKPVTTLKKIGTAAKSKTGTTVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V++SL D R EP+ Y+ G++ FV YL+ Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVRMSLTDLRGEEPQVEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I+G + + +A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYIEGEDQDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSEKLTFFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F I+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVHTIGAGVGAD-FAIDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY + + + + Y + L+D ++ + + + Sbjct: 537 VYIALPPLYKMAKGKGKTEKVAYAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + I I D + + + + + +L Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFAIDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIK 715 D ++ + + + +F +Y R +K+ Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMAKGKGKTEKVA 558 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 LD + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 YAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618 Query: 776 LFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638 >gi|110003910|emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma citri] Length = 639 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 267/588 (45%), Positives = 386/588 (65%), Gaps = 9/588 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+++SIQIL+GL+A++KRP MYIG T+ GLHH+++E++DN+IDE L +A+ I + Sbjct: 3 DNYNSESIQILEGLEAIRKRPGMYIGATNA-RGLHHLVWEIVDNSIDEVLANFANKIKII 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN D S TV DNGRGIP ++H + +S E + T LHAGGKF+ +YK+SGGLHGVG SV Sbjct: 62 LNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGASV 121 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VNALS +LK+ +++ Y M F N G + P+ GS +TGT VTFLP IF Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTS-ETGTTVTFLPDEKIFKETT 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F++ T+Q+R+++L FLN ++ISL+D + E + + + GI+ +V L++ + Sbjct: 181 IFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGTPL 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI-TSY 303 ++G DNI ++ +++ND Y EN+ F NNI +GGTH G R A+ R+I + Sbjct: 241 NDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYF 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + +K ++ DD +EG T ++SI+ P+P++ QTK KL +SEV+ +V + V G Sbjct: 301 KNINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTKTKLGNSEVKKIVSNIVGKG 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 LS++L E+P +AK I++K+ + R A+RA++ TRRK V+D SLPGKL+DC +D K Sbjct: 361 LSSYLLENPEDAKKIIEKISLSLKARIVAQRAKETTRRKIVMDSFSLPGKLSDCETKDAK 420 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +EL++VEGDSAGGSAK GR+R+ QAILPLRGKILNVE+A+ K+ + EI ++ITALG Sbjct: 421 IAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGA 480 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 GI +D+F+ KLRY K+IIMTDADVDGAHIR LLLTFF+R M LI NG +YI +PPLY Sbjct: 481 GI-KDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYK 539 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 + ++YV + LE Y + G ++ L Sbjct: 540 VENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWE 587 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 1/73 (1%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K ++QRYKGLGEMN QLWETT++P+ R LL+V + +A +A+ + + LMG+ VEPR++F Sbjct: 567 KNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLICNELMGENVEPRKKF 626 Query: 792 IQENSLPS-ALDI 803 I+EN+ LD+ Sbjct: 627 IRENAKYVKNLDV 639 >gi|306829671|ref|ZP_07462861.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC 6249] gi|304428757|gb|EFM31847.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus mitis ATCC 6249] Length = 647 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY F N G L G+ A + TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYRQRFENGGKPVTTLKKIGTAAKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDET--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R + Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V + L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|24379635|ref|NP_721590.1| DNA topoisomerase IV subunit B [Streptococcus mutans UA159] gi|24377587|gb|AAN58896.1|AE014957_9 putative DNA topoisomerase IV, subunit B [Streptococcus mutans UA159] Length = 649 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 269/649 (41%), Positives = 398/649 (61%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKKININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N DGS TV+D+GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVIINKDGSITVADHGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F + G L G A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGIVYKQRFEDGGKPATTLEKVGKAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS +F Y+T+ RL E +FL +V ++L D+RS E + Y+ G++ FV YL+ Sbjct: 179 DAGIFSTTNFVYNTIAERLNESAFLLKNVTLTLTDERSEEIEHVAFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKEILTP-VIYFEGEEADFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V + L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGLVLEQLTYFLMENGELASNLIRKAIKAREAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ D ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMDDIIKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G G F ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGAG-PDFKVDDSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++ + ++Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGAKEVVEYAWTDGELEDLRKKFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FI--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + ++ I I+D + + + + +L Sbjct: 597 TMNPENRTLIRVTIEDLARAERRVNVLMGDKVPPRRKWIEDNVKFTLEE 645 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 55/73 (75%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG +QRYKGLGEMNA QLWETT+NP+ R+L+RV I D ++A+ + LMG Sbjct: 566 LEDLRKKFGKGAMLQRYKGLGEMNADQLWETTMNPENRTLIRVTIEDLARAERRVNVLMG 625 Query: 783 DEVEPRREFIQEN 795 D+V PRR++I++N Sbjct: 626 DKVPPRRKWIEDN 638 >gi|227872280|ref|ZP_03990639.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] gi|227841892|gb|EEJ52163.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268] Length = 642 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 255/592 (43%), Positives = 357/592 (60%), Gaps = 13/592 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 SY+ADSI +L+GL+AV++RP MYIG G GL+H+IYE++DN++DE L GY I+VT Sbjct: 3 KSYNADSITVLEGLEAVRRRPGMYIGSI-GSKGLNHLIYEIVDNSVDEHLAGYCTEISVT 61 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGSCTV DNGRGIP D HK+ GISA ++MT LHAGGKF+ SYK SGGLHGVG SV Sbjct: 62 LHKDGSCTVRDNGRGIPVDRHKK-GISAERIVMTTLHAGGKFDDSSYKTSGGLHGVGSSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSDIFS 183 VNALS+++++R+ + G IYE + GI L+ +TGTE TF+P IF Sbjct: 121 VNALSNYMRVRVYQNGKIYEDEYERGIPKTELIDGLLPVVGKTKETGTETTFIPDDSIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F + L RL E ++LN ++ + D+R E + G+ AFV+ L + + + Sbjct: 181 KTRFKEEWLMSRLHETAYLNPTLHLHFRDERGEEVVSRDYYEPEGLHAFVAELVKDQSKI 240 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I QG ++ A ++ D + EN+L F N I ++GGTH+ GL++ + + SY Sbjct: 241 VSPIISFQGKSGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLKTKFAQMMNSY 300 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ + G D R G +VLS+K P+P F QTK KL S E V S V + Sbjct: 301 ARQLGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTKTKLASLEAAKDVSSVVGEE 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 L + + + K I+ ++ +R +A+ K S GKLA+C + P+ Sbjct: 361 LERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDS-NGKLANCISKTPE 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 + E+F+VEGDSAGGSAK R+R QAILPLRGKILNVE+A DK+L++ EI T+I A G Sbjct: 420 ECEIFIVEGDSAGGSAKTSRNRHTQAILPLRGKILNVEKASMDKVLANAEIKTMINAFGC 479 Query: 484 GIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G + + FDI+KLRYHKII+MTDADVDG+HI TLLLTFF+R MP LI G +Y+ PP Sbjct: 480 GFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQEGHIYVSMPP 539 Query: 541 LYGI---TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + + + +Y+ DE++L Y S G ++ +L Sbjct: 540 LYLLIPENKKEKPRYLYDEKALLAYQKKHGSSGYELKRFKGLGEMNPKELWE 591 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 137/403 (33%), Gaps = 55/403 (13%) Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGT----------GIGQDSFDINKLRYHK 499 I+ +GK E + S E L G G+ + + Sbjct: 244 IISFQGKSGKTEVECAFQFTDSFEENLLGFCNGIYTQEGGTHIVGLKTKFAQMMNSYARQ 303 Query: 500 IIIMTDADVD--GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEE 557 + I+ + D + GA R ++T + P + G L + K + V EE Sbjct: 304 LGILKEKDPNFTGADTRNGMVTVLSVKYPEPVFEGQTK---TKLASLEAAKDVSSVVGEE 360 Query: 558 SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYP----------- 606 + N + + I + I K + + ++ K Sbjct: 361 LERYFDRNLEIVKAILSCAEKSAKIRKQEEKAKVNLLSKSKYSFDSNGKLANCISKTPEE 420 Query: 607 --------------------NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 H + + + + N E V +++ +N Sbjct: 421 CEIFIVEGDSAGGSAKTSRNRHTQAIL--PLRGKILNVEKASMDKVLANAEIKTMINAFG 478 Query: 647 EKSEKSWHGSINNSDILVKRIAR----GVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + + + S + +I V + F + + I I + Sbjct: 479 CGFSEGFGNDFDISKLRYHKIILMTDADVDGSHIDTLLLTFFYRFMPELIQEGHIYVSMP 538 Query: 703 TILSLI---CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDT 759 + LI + +LL G G ++R+KGLGEMN +LWETTLNP+ Sbjct: 539 PLYLLIPENKKEKPRYLYDEKALLAYQKKHGSSGYELKRFKGLGEMNPKELWETTLNPEN 598 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 R L RV+I DA A + S LMG EV PRREFI +++ + +D Sbjct: 599 RVLKRVEIEDAKLASQVTSMLMGTEVAPRREFIFTHAMEAEID 641 >gi|169836509|ref|ZP_02869697.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate TM7a] Length = 660 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 269/568 (47%), Positives = 371/568 (65%), Gaps = 6/568 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ I + SYD IQ+L+GL+ V+KRP MYIG T G G+HH+I E+ DN+IDE++ G+ Sbjct: 1 MSNQINSGSYDGSQIQVLEGLEPVRKRPGMYIGST-GYDGVHHLIKEIADNSIDEAIAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + V + DG TV+D+GRGIP D H + G+SA E ++T LHAGGKF YKVS GL Sbjct: 60 ATRVDVKILKDGGITVTDDGRGIPVDKHPKTGLSALETVLTVLHAGGKFGGGGYKVSSGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ + + R+G +Y + F G + PL G TGT +TF P Sbjct: 120 HGVGSSVVNALSTKMIAEVVRDGQLYRVEFERGKIVQPLKKIGKTNRVTGTSITFYPDPT 179 Query: 181 IFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF DF+Y + + LR S+L V S+ D+R+ E + +GGI ++V L+ Sbjct: 180 IFKETVDFDYKWVVNYLRHQSYLTKGVFTSVQDERTQERQAFYF--EGGIRSYVKNLNIG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + ++ ++ ++ +++A+++ND Y E V F NN+ DGGTHL G ++ALTR Sbjct: 238 KDVISENIFYVERPVEDCMVEIALQYNDTYTEMVKPFANNVLTPDGGTHLVGFKAALTRV 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K+ + ++ GDD REG T+V+ +K+PDP+F QTK KL + E+R V+ Sbjct: 298 INDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQV 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +++ S +LEE+P AK +V K L A+ R AAR ARD RKG LD +LPGKLADCS Sbjct: 358 MSEYFSYYLEENPSIAKKVVNKALLAARARRAARAARDNIIRKGALDGLNLPGKLADCSS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D K+ EL++VEGDSAGGSAK GR QAILPLRGK+LN ERAR D+ML++ EI +LI Sbjct: 418 KDAKECELYIVEGDSAGGSAKSGRDSRTQAILPLRGKVLNTERARLDRMLANNEIVSLIK 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G GIG D+FDI+ LRYH+IIIMTDADVDG+HI TLL+TFFFR M ++ G +Y+ KP Sbjct: 478 GMGVGIG-DTFDISGLRYHRIIIMTDADVDGSHIATLLMTFFFRHMKEVVEGGHIYLAKP 536 Query: 540 PLYGIT-RGKSLQYVKDEESLEDYLINQ 566 PLY + G Y +E ++ + Sbjct: 537 PLYLLKAAGNKKWYAYSDEEKDNMISEL 564 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 10/127 (7%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS-MQRY 739 + + G+K +S+ ++N ++ L + KI P D+ G++ +QRY Sbjct: 540 LLKAAGNKKWYAYSDEEKDNMISELIEKRRSNGAKI-NPD---DSPMKQA--GLNDIQRY 593 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS 799 KGLGEM+A QLWETT+ P+ R L++VK+ DA +AD +FS+LMGDEV R+ FIQ + + Sbjct: 594 KGLGEMDADQLWETTMKPENRVLIQVKVEDAERADAIFSKLMGDEVSLRKSFIQTRAKDA 653 Query: 800 A---LDI 803 LD+ Sbjct: 654 NFDELDV 660 >gi|323351521|ref|ZP_08087175.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis VMC66] gi|322122007|gb|EFX93733.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis VMC66] Length = 649 Score = 561 bits (1447), Expect = e-157, Method: Composition-based stats. Identities = 273/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|89894290|ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobacterium hafniense Y51] gi|89333738|dbj|BAE83333.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 638 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 276/645 (42%), Positives = 401/645 (62%), Gaps = 19/645 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS +++ Y+A+SIQ+L+GL+AV+KRP MYIG T G GLHH +E++DNAIDE+ G+ Sbjct: 1 MSMDLK---YNAESIQVLEGLEAVRKRPGMYIGST-GSKGLHHCAWEIIDNAIDEAGAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTLN DGS TV DNGRG+P D+H + I A + +LHAGGKF+ +SYK SGGL Sbjct: 57 CTRIEVTLNPDGSLTVLDNGRGVPIDIHPVKQIPAVRLAFEQLHAGGKFDGQSYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS++L + + REG I+ + + + G L + L V +GT+VTF P Sbjct: 117 HGVGASVVNALSTFLVVEVSREGKIFRLEYEDGGKLKSDLKVIKKGIKGSGTKVTFKPDP 176 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--L 236 IF F +DTL+ RL EL+FLN + I L D+R E R T K G+ FV + Sbjct: 177 LIFKETTSFKFDTLRSRLMELAFLNPGLTIVLTDQR-KETRSETFQSKNGVIGFVEHLNK 235 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + P+ + PI +G +D+I ++ A+++NDG E++ + NNIP +GGTH SG R+AL Sbjct: 236 ESDYNPVHKKPIFFKGEKDDIIVECAIQYNDGEDEHLRSYVNNIPTDEGGTHESGFRTAL 295 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 T+ +Y +K+ K + S+IGDD ++G T VLS+K+ +P+F QTK KL ++EV VV Sbjct: 296 TKVFNAYGKKNN-IFKKEESLIGDDLKDGLTCVLSVKVREPQFEGQTKTKLSNTEVEGVV 354 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 +S N+G+S + E++P AK + + L + R AA+RA++L ++ ++ +L GKLA Sbjct: 355 QSLTNEGISTFFEQNPAVAKDAISRALTTCLERLAAKRAKELKKKARDAEVKALSGKLAA 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CSE+D ++ELFLVEGDSAGGSAK GR R QAILPLRGK++N RA+ DK+L ++EI + Sbjct: 415 CSEKDRNRNELFLVEGDSAGGSAKSGRDRRFQAILPLRGKVINTYRAKMDKVLENEEIRS 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+G GIG++ F+++K Y ++ IMTDAD+DGAHIR LLLTFF+R M LI G +YI Sbjct: 475 MITAIGAGIGKE-FEVDKSNYARVCIMTDADIDGAHIRCLLLTFFYRYMKPLILGGKVYI 533 Query: 537 IKPPLYGI--TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 + PLY + +GK ++Y DE L+D + + G ++ L Sbjct: 534 AQAPLYKVEKEKGKVVRYAYDEGELKD-ALKELGKSAKLQRYKGLGEMNPEQLWET---- 588 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 ++ + + +E + E L + Sbjct: 589 -TLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMENIV 632 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 5/178 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + V ++ + + I K + +N + + + Sbjct: 455 VINTYRAKMDKVLENEEIRSMITAIGAGIGKEFEVDKSNYARVCIMTDADIDGAHIRCLL 514 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I ++ L + + L D + +G K +Q Sbjct: 515 LTFFYRYMKPLILGGKVY-IAQAPLYKVEKEKGKVVRYAYDEGELKDALKELG-KSAKLQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMN QLWETTLNP R +++V I DA +A+ LMG++V+PRREF+ EN Sbjct: 573 RYKGLGEMNPEQLWETTLNPVNRRMIQVTIDDALEAERKLKILMGEQVDPRREFLMEN 630 >gi|153813002|ref|ZP_01965670.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174] gi|149830949|gb|EDM86039.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174] Length = 660 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 249/623 (39%), Positives = 357/623 (57%), Gaps = 23/623 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 22 KKETYDAGSISVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCSQIH 80 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGSCTV+DNGRGIP D+H++ G+SA ++ T LHAGGKF+ +YK SGGLHGVG Sbjct: 81 VVLEKDGSCTVTDNGRGIPVDMHEK-GMSAERLVFTTLHAGGKFDNSAYKTSGGLHGVGS 139 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L +++ R+G ++ + GI L G +TGT + FLP + Sbjct: 140 SVVNALSTYLDIKVSRDGYVHHDHYERGIPTIELENGLLPKLGRTK-ETGTCINFLPDPE 198 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN + I D R EP + GI ++ ++ Sbjct: 199 IFEKTRFSATDVKSRLHETAYLNPELTIIFEDLRGTEPVKEEYHEPEGIVGYIRDMNHST 258 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L P+ ++G D I +++A ++ + + ENVL F NNI +GGTHL+G ++ T + Sbjct: 259 EALH-EPVYLKGEADGIQVEVAFQYTNEFRENVLGFCNNIYNAEGGTHLTGFKTTFTTVM 317 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + G D R G T+V+SIK P PRF QTK KL + + + Sbjct: 318 NTYAREIGILKDKDPNFTGADIRNGMTAVVSIKHPAPRFEGQTKTKLDNQDAAKATGKVL 377 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L + + + K+I+ A+ +R RA+ K S GKLA+C ++ Sbjct: 378 GEQLVLYFDRNLETLKMILSCAEKAAKIRKTEERAKTNLLTKQKYSFDS-NGKLANCEKK 436 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP + E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 437 DPSQCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKATIDKVLANAEIKTMINA 496 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI+KLRY KI+IM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 497 FGCGFSEGYGNDFDISKLRYDKIVIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 556 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + +Y+ D+++LE Y G + L Sbjct: 557 MPPLYKAMPKKGPEEYLYDDKALEKYRKTHKPGSFTLQRYKGLGEMDAEQLW-------- 608 Query: 597 IDKLIKDFYPNHDKTFIEQAVIS 619 + + + IE A ++ Sbjct: 609 -ETTLNPETRRMKRVEIEDARLA 630 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 51/69 (73%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR + RV+I DA A + LMG EV PR+ FI E Sbjct: 592 TLQRYKGLGEMDAEQLWETTLNPETRRMKRVEIEDARLASSVTEVLMGSEVPPRKAFIYE 651 Query: 795 NSLPSALDI 803 ++ + LD+ Sbjct: 652 HAADAELDV 660 >gi|325689651|gb|EGD31655.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK115] Length = 649 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 275/658 (41%), Positives = 396/658 (60%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTDEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|307708545|ref|ZP_07645010.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261] gi|307615461|gb|EFN94669.1| DNA topoisomerase IV, B subunit [Streptococcus mitis NCTC 12261] Length = 647 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL D+R+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDERTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQLGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQLGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM 15897] gi|224525796|gb|EEF94901.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM 15897] Length = 641 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 282/590 (47%), Positives = 386/590 (65%), Gaps = 6/590 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ + Sbjct: 2 EQKVEHYDESDIQVLEGLEAVRKRPGMYIGTTSA-RGLHHLVWEIVDNSIDEALAGFCNK 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L V DNGRG+PT ++ + G + E I T LHAGGKF YKVSGGLHGV Sbjct: 61 IRVVLLPGDVVKVIDNGRGMPTGMNVKTGKNTIETIFTVLHAGGKFGGGGYKVSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGND-TGTEVTFLPSSDI 181 G SVVNALS WL++ + REG+IY F NG L V G + TGT V F +I Sbjct: 121 GASVVNALSEWLEVYVHREGHIYYQRFENGGTPVGSLKVVGDCEQEETGTTVVFKADPEI 180 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 F+ ++Y L RLREL+FLN +++ L D+R + Y+GG+ +V++L+++K Sbjct: 181 FTETTVYDYGVLSQRLRELAFLNKGLKLVLEDERLDPAKVDEYHYEGGLREYVAFLNKNK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 PL I + + ++IS+++AM++NDGY N+ F NNI +GGTH G R ALTR I Sbjct: 241 TPLHDHIIDCEDTMNDISVEIAMQYNDGYQPNIYSFCNNINTHEGGTHEEGFRLALTRVI 300 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K S+ GDDCREG T+++S+K PDP++ QTK KL ++EVR +V + + Sbjct: 301 NNYAKSHNFLKDKDESLSGDDCREGLTAIVSVKHPDPQYEGQTKTKLGNAEVRKIVSTIL 360 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +L E+P AKII+ KV AS R AA+RAR++TRRK LD+++LPGKLADCS + Sbjct: 361 ANALDKFLLENPDTAKIIMDKVTLASKARMAAKRAREMTRRKTALDVSNLPGKLADCSSK 420 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP + E+F+VEGDSAGGSAK GR R+ QAILPLRGKILNVE+AR +++L + EI ++ITA Sbjct: 421 DPSECEIFIVEGDSAGGSAKSGRDRKIQAILPLRGKILNVEKARLERILGNAEIRSMITA 480 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTGIG D FDINKLRYHKI+IMTDADVDG HIR L+LTF +R + LI NG++Y +PP Sbjct: 481 FGTGIG-DEFDINKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGYVYAAQPP 539 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 LY + GK Y+ + L+ + + G ++ L Sbjct: 540 LYLLRHGKDDHYLYSDYELDKLKEELGPNAKYTIQRYKGLGEMNPEQLWE 589 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 10/130 (7%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI----GRKGI 734 + +F +Y + I + + + L D + LD + + Sbjct: 515 LMLTFLYRYLKPLIENGYVYAAQPPLYLLRHGKDDHYLYSDYE-LDKLKEELGPNAK--Y 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMN QLWETT+NP+ R L R+++ DA QAD LF LMG+ VEPRR+FI+E Sbjct: 572 TIQRYKGLGEMNPEQLWETTMNPENRVLNRIQLDDAMQADQLFDMLMGERVEPRRDFIRE 631 Query: 795 NSLPS-ALDI 803 N+ LDI Sbjct: 632 NAKYVENLDI 641 >gi|227543723|ref|ZP_03973772.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908788|ref|ZP_07126251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri SD2112] gi|154705554|gb|ABS84203.1| DNA gyrase B subunit [Lactobacillus reuteri] gi|227186291|gb|EEI66362.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894195|gb|EFK87553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus reuteri SD2112] Length = 649 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 292/600 (48%), Positives = 396/600 (66%), Gaps = 14/600 (2%) Query: 1 MSDNIQNS-------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAI 53 MS+ Q YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN I Sbjct: 1 MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGI 59 Query: 54 DESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS 113 DE+L G+ D I V +N D S TV DNGRGIP D KE G SA E + T LHAGGKF Sbjct: 60 DEALAGFCDEINVVVNPDNSITVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGG 119 Query: 114 YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT--GSAGNDTGT 171 YKVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + + V G + GT Sbjct: 120 YKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGHVKSAMKVIEEGLPETEHGT 179 Query: 172 EVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIE 230 V F P +IF +N TL RLREL+FLN ++I++ D R + Y+GGI Sbjct: 180 TVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLREIDHERKEFHYEGGIR 239 Query: 231 AFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +V YL+ + L PI ++G ++I++++++++ D Y N+L FTNNI +GGTH + Sbjct: 240 HYVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHET 299 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S Sbjct: 300 GFKMALTRVINDYGHKAGILKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNS 358 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++L Sbjct: 359 DARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNL 418 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLAD + +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+ Sbjct: 419 PGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLA 478 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + EI +L TALGTG G D FDI K YHK+IIMTDADVDGAHIRTLLLT F+R M +I Sbjct: 479 NDEIRSLFTALGTGFG-DDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIT 537 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +G++YI +PPLY + +GK ++Y+ +E LE + + S + + G + L Sbjct: 538 HGYVYIAQPPLYQVRQGKFVKYIDSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWE 597 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRVK+ DA QAD +F LMG +V PRR+FI++N Sbjct: 581 IQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN 640 Query: 796 SLPS-ALD 802 + LD Sbjct: 641 AKFVENLD 648 >gi|315150486|gb|EFT94502.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0012] Length = 685 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + V +Y E+ ++ + ++ Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELSEVIDKVGKGYMLQRYKGLGEMNAEQ 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + + I+ A + + + + F E+ Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649 Query: 656 SINN 659 S + Sbjct: 650 SEED 653 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 558 WTDGELSEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 618 TTLMGDKVEPRRKWIEQH 635 >gi|118615924|ref|YP_904256.1| DNA gyrase subunit B [Mycobacterium ulcerans Agy99] gi|118568034|gb|ABL02785.1| DNA gyrase (subunit B) GyrB [Mycobacterium ulcerans Agy99] Length = 692 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 270/652 (41%), Positives = 381/652 (58%), Gaps = 39/652 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A +I +L+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ GYA Sbjct: 20 KKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGYAT 78 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGGL 120 + V L DGS V+DNGRGIP +H G +V+MT+LHAGGKF Y VSGGL Sbjct: 79 QVNVRLLDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGL 137 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVGVSVVNALS+ L++ IKR+G + + L G A TGT + F D Sbjct: 138 HGVGVSVVNALSTRLEVDIKRDGYEWSQFYDRAQP-GTLKQ-GEATKKTGTAIRFWADPD 195 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214 IF +++++T+ RL+E++FLN + I+L D+R Sbjct: 196 IFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTPDEVVDDVVSDTAEAPKSAQEKAA 255 Query: 215 ----SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYH 270 + + T Y GG+ FV +++R K P+ QS + +G +++AM+WN GY Sbjct: 256 ESTAPHKVKSRTFHYPGGLVDFVKHINRTKSPIQQSIVDFEGKGSGHEVEIAMQWNGGYS 315 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V F N I +GGTH G RSALT + Y + K ++ GDD REG +V+ Sbjct: 316 ESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVI 375 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+++ +P+F QTK KL ++EV+S V+ N+ L+ W E +P EAK IV K + ++ R Sbjct: 376 SVRVAEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPSEAKTIVNKAVSSAQARL 435 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR QAI Sbjct: 436 AARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAI 495 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 LPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FD++KLRYHKI++M DADVDG Sbjct: 496 LPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDLSKLRYHKIVLMADADVDG 554 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI NG +++ +PPLY + ++ + D L+ L Sbjct: 555 QHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRTEPEFAYSDRERDGLLEAGLKA 614 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++ + I + +D + + + ++ A + Sbjct: 615 GKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 664 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 607 LLEAGLKAGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 665 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 666 SILMGEDVDARRSFITRNAKDVRFLDV 692 >gi|322517179|ref|ZP_08070062.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus vestibularis ATCC 49124] gi|322124238|gb|EFX95754.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus vestibularis ATCC 49124] Length = 649 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 275/623 (44%), Positives = 392/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNNDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + +++A+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQEFHLEVALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KALNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDSIVSEHLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVG-VDFNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L I G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGAILQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGVDFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGAILQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKPAPRRQWIEDN 638 >gi|73916278|gb|AAZ93007.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916280|gb|AAZ93008.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916282|gb|AAZ93009.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916284|gb|AAZ93010.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 405/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 RETTMDPEHRLMARVSVDDAAEADKI 621 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QL ETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLRETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|222151258|ref|YP_002560414.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402] gi|222120383|dbj|BAH17718.1| topoisomerase IV subunit B [Macrococcus caseolyticus JCSC5402] Length = 671 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 262/594 (44%), Positives = 378/594 (63%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N+ Y+ +SIQ+L+GL+AV+KRP MYIG TD GLHH++YE+LDN+IDE+L G+ + I Sbjct: 1 MANNQYNDESIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEILDNSIDEALNGHGNEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V LN D S TV+DNGRG+PT LH + G EVI T LHAGGKF Q YK +GGLHGVG Sbjct: 60 NVVLNADDSVTVTDNGRGMPTGLH-KTGKPTPEVIFTVLHAGGKFGQGGYKTTGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSSWL++ I G I++ F + G+ L G + TGT VTF P IF Sbjct: 119 ASVVNALSSWLEVTIHNNGKIFKQRFQDGGVPVTTLEEIGKSK-KTGTTVTFKPDPSIFK 177 Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+DTL RLRE +FL ++++I++ D R+ E R +Y+ G++ FV++++ K+ Sbjct: 178 QTVKFNFDTLSERLRESAFLLNNLKITISDLRNNEERHEVFYYEDGLKDFVNFVNEGKET 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + G +I +++A ++ND Y E +L F NN+ KDGGTH G+++A+TR Sbjct: 238 LHEVAK-FSGKSHDIEVEVAFQFNDQYSETILSFVNNVRTKDGGTHEVGMKTAITRVFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ G+D REG T+++S+K+P+ +F QTK KL +SE RS V+ + Sbjct: 297 YARKIGELKAKDKNLDGNDIREGMTAIISVKIPENLLQFEGQTKSKLGTSEARSAVDGVL 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L + EE+ + ++ +VKK + A+ RDAAR+AR+ +K L GKL Sbjct: 357 SEQLPFYFEENGVLSQKLVKKAVKAAQARDAARKAREEARNGKKNKRKETLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D ++EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + +L ++EI T+I Sbjct: 417 SKDTSRNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKNEEISTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D F++ Y KIIIMTDAD DGAHI+ LLLTFFF+ M LI G +YI Sbjct: 477 HTIGAGVGND-FEVKDANYDKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAGKVYIAL 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +++GK V + +D + + I G ++ + L + Sbjct: 536 PPLYKVSKGKGKNEVIEYAWTDDELKGVQKKVGKGFILQRYKGLGEMNADQLWD 589 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + +D + + S + ++ ++ Sbjct: 375 VKKAVKAAQARDAARKAREEARNGKKNKRKETLLSGKLTPAQSKDTSRNELYLVEGDSAG 434 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ +++ ++ I + N Sbjct: 435 GSAKLGRDRKFQAILPLRGKVINTEKAKLEDILKNEEISTIIHTIGAGVGNDFEVKDANY 494 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 D ++ + F F I + ++ + + + I+ Sbjct: 495 DKIIIMTDADTDGAHIQVLLLTFFFKYMKPLIDAGKVYIALPPLYKVSKGKGKNEVIEYA 554 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLW+TT+NP+TR+L+RV+I D ++ Sbjct: 555 WTDDELKGVQKKVGKGFILQRYKGLGEMNADQLWDTTMNPETRTLIRVEIDDELRSAKRV 614 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+VEPRR++I+ + Sbjct: 615 STLMGDKVEPRRDWIERH 632 >gi|29376174|ref|NP_815328.1| DNA topoisomerase IV subunit B [Enterococcus faecalis V583] gi|227518804|ref|ZP_03948853.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104] gi|229545771|ref|ZP_04434496.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322] gi|229549961|ref|ZP_04438686.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200] gi|256853176|ref|ZP_05558546.1| topoisomerase IV B subunit [Enterococcus faecalis T8] gi|257422560|ref|ZP_05599550.1| topoisomerase IV subunit B [Enterococcus faecalis X98] gi|293382943|ref|ZP_06628861.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712] gi|293389568|ref|ZP_06634025.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613] gi|294781701|ref|ZP_06747036.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1] gi|300861193|ref|ZP_07107280.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11] gi|307270968|ref|ZP_07552251.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248] gi|307273174|ref|ZP_07554420.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855] gi|307274908|ref|ZP_07556071.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134] gi|307289156|ref|ZP_07569112.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109] gi|307291946|ref|ZP_07571815.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411] gi|312899465|ref|ZP_07758795.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470] gi|312903358|ref|ZP_07762538.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635] gi|312907586|ref|ZP_07766577.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512] gi|312910204|ref|ZP_07769051.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516] gi|312951548|ref|ZP_07770444.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102] gi|15982570|dbj|BAB69480.1| topoisomerase IV B subunit [Enterococcus faecalis] gi|29343637|gb|AAO81398.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis V583] gi|227073717|gb|EEI11680.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX0104] gi|229304874|gb|EEN70870.1| DNA topoisomerase IV subunit B [Enterococcus faecalis ATCC 29200] gi|229309083|gb|EEN75070.1| DNA topoisomerase IV subunit B [Enterococcus faecalis TX1322] gi|256711635|gb|EEU26673.1| topoisomerase IV B subunit [Enterococcus faecalis T8] gi|257164384|gb|EEU94344.1| topoisomerase IV subunit B [Enterococcus faecalis X98] gi|291079608|gb|EFE16972.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis R712] gi|291081185|gb|EFE18148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis S613] gi|294451253|gb|EFG19720.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis PC1.1] gi|300850232|gb|EFK77982.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TUSoD Ef11] gi|306496944|gb|EFM66492.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0411] gi|306499865|gb|EFM69226.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0109] gi|306508356|gb|EFM77463.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2134] gi|306510159|gb|EFM79183.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0855] gi|306512466|gb|EFM81115.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4248] gi|310626614|gb|EFQ09897.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 512] gi|310630514|gb|EFQ13797.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0102] gi|310633234|gb|EFQ16517.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0635] gi|311289477|gb|EFQ68033.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis DAPTO 516] gi|311293335|gb|EFQ71891.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0470] gi|315029334|gb|EFT41266.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4000] gi|315034019|gb|EFT45951.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0017] gi|315037028|gb|EFT48960.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0027] gi|315147315|gb|EFT91331.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX4244] gi|315152429|gb|EFT96445.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0031] gi|315155702|gb|EFT99718.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0043] gi|315158127|gb|EFU02144.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0312] gi|315164065|gb|EFU08082.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1302] gi|315168985|gb|EFU13002.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1341] gi|315169781|gb|EFU13798.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1342] gi|315172254|gb|EFU16271.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX1346] gi|315575816|gb|EFU88007.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309B] gi|315577656|gb|EFU89847.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0630] gi|315580468|gb|EFU92659.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0309A] gi|323480780|gb|ADX80219.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis 62] gi|327535184|gb|AEA94018.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Enterococcus faecalis OG1RF] Length = 685 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + V +Y E+ ++ + ++ Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + + I+ A + + + + F E+ Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649 Query: 656 SINN 659 S + Sbjct: 650 SEED 653 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 618 TTLMGDKVEPRRKWIEQH 635 >gi|227529858|ref|ZP_03959907.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350227|gb|EEJ40518.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 648 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 288/599 (48%), Positives = 397/599 (66%), Gaps = 13/599 (2%) Query: 1 MSDNIQN------SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MSD + S YDA IQ+LKGLDAV+KRP MYIG T + GLHH+++E++DN ID Sbjct: 1 MSDEQKETKAELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQ-GLHHLVWEIVDNGID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ + I V + D S +V+DNGRGIP D KE G A E + T LHAGGKF Y Sbjct: 60 EALAGFCNEINVIVEPDNSISVTDNGRGIPVDTQKETGKPALETVFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTE 172 KVSGGLHGVG SVVNALS+ L +++ R+G Y M F +G + + V + GT Sbjct: 120 KVSGGLHGVGASVVNALSTELDVKVSRQGKRYYMDFDHGHVKTSMKVIDENVPEDIHGTT 179 Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 V F P +IF +N TL +RLREL+FLN ++I++ DKR E Y+GGI Sbjct: 180 VHFKPDPEIFRETTTYNIKTLTNRLRELAFLNKGLKITIEDKRDKESERQEFHYEGGIRH 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 +V +L+ K L + PI ++G + I++++++++ D Y ++L FTNNI +GGTH +G Sbjct: 240 YVDFLNEGKTTLFEPPIYVEGKENGITVEVSLQYTDSYRSDLLTFTNNIHTYEGGTHETG 299 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 + ALTR I Y K+ K ++ ++ GDD REG T+V+SIK PDP+F QTK KL +S+ Sbjct: 300 FKMALTRVINDYGHKAGVLKSNE-TLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSD 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 R+ + + +L EHP EA+ I++K AS R AA+RAR++TR+K L+I++LP Sbjct: 359 ARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAAKRAREVTRKKSGLEISNLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLAD + +DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++ Sbjct: 419 GKLADNTSKDPNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAN 478 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 EI +L TALGTG G+D FDI K YHK+IIMTDADVDGAHIRTLLLT F+R M +I + Sbjct: 479 DEIRSLFTALGTGFGED-FDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMITH 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G++YI +PPLY + +GK ++Y++ +E L+ + + S + + G + L Sbjct: 538 GYVYIAQPPLYQVRQGKFVKYIESDEELDRVVNSLQPSPKPVIQRYKGLGEMDAEQLWE 596 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRV + DA A+++F LMG++V PRREFI++N Sbjct: 580 IQRYKGLGEMDAEQLWETTMDPEKRHLLRVNLDDAKAAEEIFPMLMGNKVTPRREFIEKN 639 Query: 796 SLPS-ALD 802 + LD Sbjct: 640 AKFVENLD 647 >gi|86738729|ref|YP_479129.1| DNA gyrase subunit B [Frankia sp. CcI3] gi|86565591|gb|ABD09400.1| DNA gyrase subunit B [Frankia sp. CcI3] Length = 679 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 282/589 (47%), Positives = 374/589 (63%), Gaps = 10/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D Sbjct: 31 EGTRRVAYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCD 89 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ITVTL DG V+DNGRGIP +H E A EV++T LHAGGKF+ KSY VSGGLHG Sbjct: 90 TITVTLLADGGVRVTDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHG 149 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L + I +G+++ ++ D PL TG+ + VTF IF Sbjct: 150 VGVSVVNALSTRLDVEIHLDGHVWFQPYVATRPDKPLAKTGTTRRTGTS-VTFWADPTIF 208 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++ Y+TL RL+E++FLN + I+L+D+R E +T Y G+ FV +L+ K Sbjct: 209 ETTEYKYETLSRRLQEMAFLNKGLSITLVDERDEERVAVTYKYANGLVDFVGHLNATKDT 268 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +S I ++ I +LAM+WN GY E+V F N I +GGTH G R+ALT + + Sbjct: 269 IHRSVISLESKGVGIEAELAMQWNGGYTESVYTFANTINTHEGGTHEEGFRAALTSAVNA 328 Query: 303 YVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 Y + K K + GDD REG T+++S+K+ P+F QTK KL ++E + Sbjct: 329 YAKDQNLLKPVKAGAKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKF 388 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+ L W E + EA+ IV K LDA R AAR+ARDLTRRKG+L LPGKLA Sbjct: 389 VQEMCYSALKDWFEVNRTEARAIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGKLA 448 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC DP++ EL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + E+ Sbjct: 449 DCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQ 508 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LI ALGTGI D FDI KLRYHKI++M DADVDG HIRTLLLT FR M L+ G ++ Sbjct: 509 ALIQALGTGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVF 567 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 + +PPLY I G+ + D L+ + + +L D+ Sbjct: 568 LAQPPLYKIKWGREDWEYAYSDRERDGLVARGVESGRKLPKDAIQRFKG 616 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS LMG++V+ RR FIQ N Sbjct: 611 IQRFKGLGEMNATELWDTTMDPDRRILLQVTLDDAAVADELFSVLMGEDVDARRSFIQRN 670 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 671 AKDVRFLDI 679 >gi|315145098|gb|EFT89114.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2141] gi|315160386|gb|EFU04403.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0645] Length = 685 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + V +Y E+ ++ + ++ Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + + I+ A + + + + F E+ Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649 Query: 656 SINN 659 S + Sbjct: 650 SEED 653 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 618 TTLMGDKVEPRRKWIEQH 635 >gi|297158796|gb|ADI08508.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1] Length = 680 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 285/646 (44%), Positives = 391/646 (60%), Gaps = 12/646 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I VT+ Sbjct: 36 SYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTIEVTI 94 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V DNGRGIP DLH E A EV++T LHAGGKF Y VSGGLHGVGVSVV Sbjct: 95 LPDGGVRVVDNGRGIPVDLHPVEKKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 154 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ + + +KR+G + + G+ PL +TGT VTF D+F +++ Sbjct: 155 NALSTKVSVEVKRDGYRWTQDYKLGVPTAPLAK-NEQVTETGTTVTFWADPDVFETTEYS 213 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY-LDRHKK 241 ++TL R +E++FLN + ISL D+R +P +T Y+GGI FV Y R + Sbjct: 214 FETLSRRFQEMAFLNKGLSISLTDERAAHVDEEGKPLSVTYCYEGGIVDFVQYLNSRKGE 273 Query: 242 PLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + + I + +S+++AM+WN Y E V F N I +GGTH G R+ALT Sbjct: 274 LVHPTIIGFEAEDKERMLSVEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGFRAALTYL 333 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++E ++ V+ Sbjct: 334 INKYARDKKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAKTFVQKI 393 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V++ L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ ASLPGKLADC Sbjct: 394 VHEHLADWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLETASLPGKLADCQS 453 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L + E+ LI+ Sbjct: 454 NDPAKCEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARVDKILQNNEVQALIS 513 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTG+ +D FDI+KLRYHKII+M DADVDG HI TLLLTF FR M L+ G +++ +P Sbjct: 514 AFGTGVHED-FDISKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGHVFLSRP 572 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY I G+ + D LI + + DS N + + Sbjct: 573 PLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMD 632 Query: 600 LIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 + QA D E S + A + F+ Sbjct: 633 VDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 678 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + GR K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 594 DALIQAGREQGKRIKEDSVQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 653 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 654 SVLMGEDVEARRSFIQRNAKDVRFLDI 680 >gi|228909407|ref|ZP_04073232.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200] gi|228850184|gb|EEM95013.1| DNA topoisomerase 4 subunit B [Bacillus thuringiensis IBL 200] Length = 654 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 267/663 (40%), Positives = 400/663 (60%), Gaps = 20/663 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MAK--HQFQYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+V ++ D S +V D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 58 GDEISVVIHKDNSISVIDKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + IKR+GNIYE F N GI L G ++GT + F P + Sbjct: 117 HGVGASVVNALSEWLVVTIKRDGNIYEQRFENGGIPATTLEKIGKTK-ESGTTMHFKPDT 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++NY+TL RLRE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ Sbjct: 176 TIFSTTNYNYETLCERLRESAFLLKGMKISIKDERND--LEDIFHYETGIEAFVSYLNEE 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + G ++ I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Sbjct: 234 KDSIHP-VVYFTGEQNGIEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +++S+++P+ +F QTK KL +SE RS ++ Sbjct: 293 FNEYARKVSLLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSID 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLA 415 + V++ L+ +LEE+P A ++V+K + A+ R+AAR+AR+ R + +L GKL Sbjct: 353 AIVSEHLAYFLEENPDVATLLVRKAVKAAQAREAARKAREEARSGKKKKKSEGTLSGKLT 412 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI Sbjct: 413 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEIN 472 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G + FD+ + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 473 TIIYAIGGGVGNE-FDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVF 531 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + ++Y +E L+ ++ + + + + Sbjct: 532 IALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQRYKGLGEMNADQLWETTM 591 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I I D + ++ + + + N + ++ Sbjct: 592 NPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMET 651 Query: 650 EKS 652 E Sbjct: 652 EVE 654 Score = 160 bits (405), Expect = 9e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 454 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 514 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDEELDGVTKKVGKGYMLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 574 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 631 >gi|315027216|gb|EFT39148.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX2137] Length = 685 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 271/664 (40%), Positives = 388/664 (58%), Gaps = 16/664 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + V +Y E+ ++ + ++ Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + + I+ A + + + + F E+ Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649 Query: 656 SINN 659 S + Sbjct: 650 SEED 653 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 618 TTLMGDKVEPRRKWIEQH 635 >gi|148985841|ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71] gi|73916286|gb|AAZ93011.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916318|gb|AAZ93027.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916322|gb|AAZ93029.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|73916344|gb|AAZ93040.1| DNA gyrase subunit B [Streptococcus pneumoniae] gi|147921987|gb|EDK73111.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71] gi|301799821|emb|CBW32390.1| DNA gyrase subunit B [Streptococcus pneumoniae OXC141] Length = 648 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 276/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVAELEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG +V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLAAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|41406103|ref|NP_958939.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463778|ref|YP_879308.1| DNA gyrase subunit B [Mycobacterium avium 104] gi|254773058|ref|ZP_05214574.1| DNA gyrase subunit B [Mycobacterium avium subsp. avium ATCC 25291] gi|13431552|sp|Q9L7L3|GYRB_MYCPA RecName: Full=DNA gyrase subunit B gi|6969273|gb|AAF33694.1| putative gyrB [Mycobacterium avium subsp. paratuberculosis] gi|41394451|gb|AAS02322.1| GyrB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165065|gb|ABK65962.1| DNA gyrase, B subunit [Mycobacterium avium 104] Length = 677 Score = 561 bits (1445), Expect = e-157, Method: Composition-based stats. Identities = 274/656 (41%), Positives = 384/656 (58%), Gaps = 41/656 (6%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116 GYAD + V + DGS V+DNGRGIP +H G +V+MT+LHAGGKF Y V Sbjct: 60 GYADRVDVRILDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNV 118 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS+ L++ I R+G + + + + L G A TGT + F Sbjct: 119 SGGLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVP-GTLKQ-GEATKRTGTTIRFW 176 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214 DIF +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 ADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKSAQ 236 Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 + + T Y GG+ FV +++R K P+ QS I G +++AM+WN Sbjct: 237 EKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQWN 296 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G RSALT + Y + K ++ GDD REG Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK+IV K + ++ Sbjct: 357 AAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAVSSA 416 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DA Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 DVDG HI TLLLT FR M LI +G +++ +PPLY + +S + D L+ Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 595 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 L ++ D I + +D + + + ++ A + Sbjct: 596 GLKAGKKINKDDG--IQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADEL 649 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 592 LLEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELF 650 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677 >gi|73916252|gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae] Length = 648 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 404/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVIADLEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGGDQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGGDQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|324992846|gb|EGC24766.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK405] gi|324994514|gb|EGC26427.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK678] gi|327462153|gb|EGF08480.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1] Length = 647 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 273/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDK 610 + D I I+D + Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046] Length = 641 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 285/593 (48%), Positives = 398/593 (67%), Gaps = 8/593 (1%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ DN SYDAD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L Sbjct: 1 MALEDNKVQQSYDADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY ITVT+ D V DNGRGIP D+ ++ G+ A EVIMT LHAGGKF YKVSG Sbjct: 60 GYCSGITVTIEQDNWIRVEDNGRGIPVDIQEKMGMPAVEVIMTVLHAGGKFGGGGYKVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG SVVNALSS +++ R+G I+E+ F G L V G + TGT F Sbjct: 120 GLHGVGASVVNALSSQTIVQVHRDGKIHEIIFERGHTVQQLTVIGETDH-TGTTTRFKAD 178 Query: 179 SDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 S+IF + YD L R+REL++LN + +++ D+R+ + R T ++GGI +V +++ Sbjct: 179 SEIFKETTVYEYDILATRIRELAYLNRGISLTIADERTGQERSETFHFEGGIREYVEHIN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 +K+ + + G ++ I++++AM++N G+ N++ F NNI +GGTH SG ++ALT Sbjct: 239 ENKEAIHAPID-VLGEKEGITVEIAMQYNAGFSSNIMSFANNINTYEGGTHESGFKTALT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 R I Y KS K+ ++ G+D REG T+++SIK P+P+F QTK KL +SEV + Sbjct: 298 RVINDYARKSNLIKESDANLTGEDVREGLTAIVSIKHPEPQFEGQTKTKLGNSEVSQITN 357 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 + +DG +L E+P A+ +++K A+ R AA++AR+ TRRK L+++SLPGKLADC Sbjct: 358 ALFSDGFERFLLENPSVARQVIEKGTMAARARVAAKKAREFTRRKSALEVSSLPGKLADC 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S +P +SE+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR D++LS+ EI + Sbjct: 418 SSTNPAESEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAM 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITA GTGIG++ F++ K RYHKI+IMTDADVDGAHIR LLLTFFFR M LI G++Y Sbjct: 478 ITAFGTGIGEE-FNLEKARYHKIVIMTDADVDGAHIRVLLLTFFFRFMRPLIEAGYVYAA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQS-LSEEIELFCDSKGVISKNDLRN 589 KPPLY + +GK ++Y ++ LED L L + G ++ L + Sbjct: 537 KPPLYQVKQGKHVEYCYSDQELEDILNRLPKLPKPNVQRYKGLGEMNATQLWD 589 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 59/70 (84%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMNA+QLW+TT++P+ R+L+RV++ DA +AD +F LMGDEV PRR+FI+E Sbjct: 572 NVQRYKGLGEMNATQLWDTTMDPEHRTLIRVELDDAIEADKIFDHLMGDEVAPRRDFIEE 631 Query: 795 NSLPS-ALDI 803 N++ LDI Sbjct: 632 NAVYVQDLDI 641 >gi|116627477|ref|YP_820096.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9] gi|116100754|gb|ABJ65900.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMD-9] gi|312277994|gb|ADQ62651.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus ND03] Length = 649 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 277/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + + ++LA+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L + G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 + I I D + + + + + +L A Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|157692485|ref|YP_001486947.1| DNA topoisomerase IV subunit B [Bacillus pumilus SAFR-032] gi|157681243|gb|ABV62387.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Bacillus pumilus SAFR-032] Length = 655 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 266/658 (40%), Positives = 393/658 (59%), Gaps = 22/658 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 Q Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ D Sbjct: 3 KKQQVDYNDDSIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEVLAGHGDH 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V ++ D S +V D GRG+PT +H + G E+I+T LHAGGKF Q YK SGGLHGV Sbjct: 62 IVVKIHKDNSISVQDKGRGMPTGMH-KLGKPTPEIILTVLHAGGKFGQGGYKTSGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I+R+G IY F N G L G TGT + F P +F Sbjct: 121 GASVVNALSEWLTVTIERDGYIYHQRFENGGKPVTSLEKVGKTK-KTGTLIHFKPDRSMF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 SV +N+DTL RLRE +FL ++I LID+R + T +Y+ GIEAFV+ +K Sbjct: 180 SVTTYNFDTLSERLRESAFLLKGLKIELIDERHD--VQETFYYETGIEAFVA-YLNEEKD 236 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 237 VLSEVVSFEGEHQSIEVDFAFQFNDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V++ + Sbjct: 297 YARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAVI 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 ++ L+ +LEE+ A ++V+K + A R+AARRAR+ R +K A+L GKL Sbjct: 357 SEKLAYFLEENRETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P ++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI T+I Sbjct: 417 SRNPARNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+G G+G F++ + Y KI+IMTDAD DGAHI+ LLLTFF+R M LI +G ++I Sbjct: 477 HAIGGGVG-VDFNVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIAL 535 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 PPLY ++ + + ++Y +E ++D L I+ + G ++ + L Sbjct: 536 PPLYKVSKGSGKKEVIEYAWSDEEMDDVLKKVGKGYTIQRY-KGLGEMNADQLWET---- 590 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + +A L+ + E Sbjct: 591 -TMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILENE 647 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 105/265 (39%), Gaps = 6/265 (2%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + + + Q ++ + S + ++ Sbjct: 368 RETATLLVRKAIKAQQAREAARRAREEARSGKKRKKSEATLSGKLTPAQSRNPARNELYL 427 Query: 597 IDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ + QAV+ V N E + ++ ++ ++ I + Sbjct: 428 VEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGVDF 487 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 + N D +V + F + I ++ + + K Sbjct: 488 NVEDINYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGK 547 Query: 714 IKI---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA Sbjct: 548 KEVIEYAWSDEEMDDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDA 607 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++ + + LMGD+VEPRR++I++N Sbjct: 608 ARVERRVTTLMGDKVEPRRKWIEKN 632 >gi|327460298|gb|EGF06635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1057] gi|328946252|gb|EGG40396.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1087] Length = 647 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 272/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDK 610 + D I I+D + Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|325696560|gb|EGD38450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK160] Length = 647 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 272/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYTDNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDK 610 + D I I+D + Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|171779306|ref|ZP_02920270.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281923|gb|EDT47354.1| hypothetical protein STRINF_01147 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 649 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 270/623 (43%), Positives = 387/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + I V LN DGS TV D GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGTQIDVILNQDGSVTVKDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS WL++ I R+G +Y+ F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSRWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTMVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKNVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L + G +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTPVIW-VTGEDQGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y KS K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDSIVSEKLTFFLLENGEVASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FKVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LE+ +++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I D + Sbjct: 597 TMNPETRTLIRVTIDDLARAERR 619 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + +N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDILKNEEINTMIYTIGAGVGADFKVENSNY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+VEPRR++I++N Sbjct: 621 SVLMGDKVEPRRKWIEDN 638 >gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 641 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 291/641 (45%), Positives = 414/641 (64%), Gaps = 5/641 (0%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTEDYGAGQIQVLEGLEAVRKRPGMYIGSTS-EKGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I V + D V+DNGRGIP + ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ADTIEVVIEKDNWIKVTDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA-GNDTGTEVTFLPSS 179 HGVG SVVNALS L++ + ++ +Y + G+ L V ++TGT + F S Sbjct: 120 HGVGSSVVNALSEDLEVYVYKDRKVYHQGYKKGVPQFDLKVIEETDDDNTGTVIRFKADS 179 Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF ++Y+TLQ R REL+FLN + I+L D+R E RE T Y+GGI+++V L+ Sbjct: 180 EIFTETTTYHYETLQQRTRELAFLNKGISITLRDERGEEVREDTYHYEGGIKSYVEMLNE 239 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+PL + PI + ++D+I +++A+++N G+ N+L + NNI +GGTH G + AL+R Sbjct: 240 NKQPLHEEPIYVHQTKDDIEVEIALQYNKGFATNLLTYANNIHTYEGGTHEEGFKRALSR 299 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR +V+ Sbjct: 300 VLNSYGLNSKIIKEDKERLSGEDTREGLTAIVSIKHGDPQFEGQTKTKLGNSEVRQIVDK 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L EHP +I+V+K + AS R AA++AR++TRRK L+I+SLPGKLADCS Sbjct: 360 LFSELFERFLYEHPQVGRIVVEKGIMASHARLAAKKAREVTRRKSALEISSLPGKLADCS 419 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP +SE+F+VEGDSAGGS K GR E QAILPLRGKILNVE+AR D++L++ EI ++I Sbjct: 420 SKDPSRSEIFIVEGDSAGGSTKSGRDSETQAILPLRGKILNVEKARLDRILNNNEIRSMI 479 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG + FD++K RYHKI++MTDADVDGAHIRTLLLTFF+R M L+ G++YI + Sbjct: 480 TAFGTGIGGE-FDLSKARYHKIVLMTDADVDGAHIRTLLLTFFYRFMRPLLEAGYVYIAQ 538 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRNFIDDALKI 597 PPL+ +T+GK YV +E LE + G ++ + L + Sbjct: 539 PPLFKLTQGKQKYYVFNERELEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENR 598 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L + + + ++ V + ++ + L Sbjct: 599 AMLQVSLDDAIEADQVFEMLMGDVVENRRQFIEDNAVYANL 639 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 3/102 (2%) Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K + L+ + + S+ RYKGLGEMNA QLWETT+NP+ R Sbjct: 540 PLFKLTQGKQKYYVFNERE-LEKLKAELEPTPKWSISRYKGLGEMNADQLWETTMNPENR 598 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALD 802 ++L+V + DA +AD +F LMGD VE RR+FI++N++ + LD Sbjct: 599 AMLQVSLDDAIEADQVFEMLMGDVVENRRQFIEDNAVYANLD 640 >gi|307706405|ref|ZP_07643215.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321] gi|307618192|gb|EFN97349.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK321] Length = 647 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 279/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGMVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWKT 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLW+TT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWKTTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|325687511|gb|EGD29532.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK72] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 272/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGALLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGALLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|332360829|gb|EGJ38635.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK49] Length = 647 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 271/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSEKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FI--DDALKIDKLIKDFYPNHDK 610 + D I I+D + Sbjct: 595 TMNPDTRTLIRVTIEDLARAERR 617 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290] gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290] gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 647 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 288/597 (48%), Positives = 402/597 (67%), Gaps = 10/597 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADQKETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ITVT+ D S TV+D+GRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174 VSGGLHGVG SVVNALS L + + R G +Y M F G + P+ V + + GT+V Sbjct: 120 VSGGLHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVH 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FLP DIF F+ L RLREL+FLN ++I + D R +P E Y+GGI +V Sbjct: 180 FLPDPDIFRETTTFDIKVLTARLRELAFLNKGLRIIVRDMRPEKPTEQDFLYEGGIRHYV 239 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLD+ K+ L++ PI ++G + I++++A+ +++ YH ++ FTNNI +GGTH G + Sbjct: 240 EYLDKDKETLLKEPIYVEGMDNGITVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHEEGFK 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR I Y K+ K ++ ++ G+D REG T+V+SIK PDP+F QTK KL +S+ R Sbjct: 300 RALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + +D S +L E+P A+ I+ + L AS R AA+RAR++TRRK L+I+SLPGK Sbjct: 360 TVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LAD + +DPK SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A D++L+++E Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRILANEE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G D FD++K+ YHK+IIMTDADVDGAHI+TLLLT +R M LI G+ Sbjct: 480 IRSLFTAMGTGFG-DDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGY 538 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ +PPLY + +GK +Y+ ++ L +L S + + G + L + Sbjct: 539 VYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWD 595 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++A+ +FS LMGD+VEPRREFI++N Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFSMLMGDKVEPRREFIEDN 638 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 639 ATFVENLDI 647 >gi|327474459|gb|EGF19865.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK408] gi|332360276|gb|EGJ38089.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK355] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 271/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|322388043|ref|ZP_08061649.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis ATCC 700779] gi|321141064|gb|EFX36563.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus infantis ATCC 700779] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 276/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYRQRFENGGKPVTTLEKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y G++ FVSYL+ Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYVNGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V + L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|325694452|gb|EGD36361.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK150] gi|327489834|gb|EGF21624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1058] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 274/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGSDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|322375407|ref|ZP_08049920.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300] gi|321279670|gb|EFX56710.1| DNA topoisomerase IV, B subunit [Streptococcus sp. C300] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + I++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEENGFQIEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R + Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V + L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|291525298|emb|CBK90885.1| DNA topoisomerase IV subunit B [Eubacterium rectale DSM 17629] Length = 640 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 251/621 (40%), Positives = 353/621 (56%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YD SI IL+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G D I Sbjct: 3 KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL +GSCTV DNGRGIP +H + G+SAA V+ + LHAGGKF+ YK SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ + I R+G I+ + G+ L G TGT + FLP + Sbjct: 121 SVVNALSTYMDVEISRDGFIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTRINFLPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + +++RL+E ++LN + I DKR I GI FV L+++ Sbjct: 180 IFEKTRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIIGFVKDLNKNI 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I G +NI +++A ++ +HEN+L F NNI +GG H++G ++A T I Sbjct: 240 EKLH-DVIYFTGESENIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K + G D R G T+V+S+K PDPRF QTK KL + + Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND + + +++ K ++ A+ +R A +A+ K S GKLA+C R Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R QAI+P+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI G +Y+ Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY I +Y+ D+ L+ Y + ++ + + + ++ A + Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + K I+ + Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 53/69 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLW+TTLNP TR L R++I D A+D+ S LMG +V PR+EFI E Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631 Query: 795 NSLPSALDI 803 ++ + LD+ Sbjct: 632 HAHDAELDV 640 >gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577] gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577] Length = 647 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 288/597 (48%), Positives = 402/597 (67%), Gaps = 10/597 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D + + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE Sbjct: 1 MADQKETKKELANEYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIVDNGIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A ITVT+ D S TV+D+GRGIP D+ K+ G A E + T LHAGGKF YK Sbjct: 60 ALAGFATKITVTVEKDNSITVTDDGRGIPVDIQKKTGKPALETVYTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174 VSGGLHGVG SVVNALS L + + R G +Y M F G + P+ V + + GT+V Sbjct: 120 VSGGLHGVGASVVNALSEELDVAVTRNGKVYYMDFSRGHVTTPMKVIDHVSDDLHGTKVH 179 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 FLP DIF F+ L RLREL+FLN ++I + D R +P E Y+GGI +V Sbjct: 180 FLPDPDIFRETTTFDIKVLTARLRELAFLNKELRIIVRDMRPEKPTEQDFLYEGGIRHYV 239 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 YLD+ K+ L++ PI ++G + I++++A+ +++ YH ++ FTNNI +GGTH G + Sbjct: 240 EYLDKDKETLLKEPIYVEGMDNGITVEVAIDYSEDYHSTLMTFTNNIHTYEGGTHEEGFK 299 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ALTR I Y K+ K ++ ++ G+D REG T+V+SIK PDP+F QTK KL +S+ R Sbjct: 300 RALTRVINDYARKNNLLKDNEANLSGEDVREGTTAVVSIKHPDPQFEGQTKTKLGNSDAR 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V + +D S +L E+P A+ I+ + L AS R AA+RAR++TRRK L+I+SLPGK Sbjct: 360 TVTDRIFSDHFSKFLMENPKLARKIIDRGLLASKARSAAKRAREVTRRKSGLEISSLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LAD + +DPK SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A D++L+++E Sbjct: 420 LADNTSKDPKISELFIVEGDSAGGSAKQGRARLTQAILPIRGKILNVEKASMDRILANEE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +L TA+GTG G D FD++K+ YHK+IIMTDADVDGAHI+TLLLT +R M LI G+ Sbjct: 480 IRSLFTAMGTGFG-DDFDLSKINYHKLIIMTDADVDGAHIQTLLLTLIYRYMRPLIDAGY 538 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ +PPLY + +GK +Y+ ++ L +L S + + G + L + Sbjct: 539 VYVAQPPLYQVRQGKMQRYIDSDDDLNQFLGTLQPSPKPVIQRYKGLGEMDAEQLWD 595 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 43/69 (62%), Positives = 58/69 (84%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLW+TT+NP+ R LLRV+ +DA++A+ +FS LMGD+VEPRREFI++N Sbjct: 579 IQRYKGLGEMDAEQLWDTTMNPENRHLLRVESSDAAEANHVFSMLMGDKVEPRREFIEDN 638 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 639 ATFVENLDI 647 >gi|270292568|ref|ZP_06198779.1| topoisomerase IV, subunit B [Streptococcus sp. M143] gi|270278547|gb|EFA24393.1| topoisomerase IV, subunit B [Streptococcus sp. M143] Length = 647 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|306825057|ref|ZP_07458399.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432493|gb|EFM35467.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 649 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 275/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E E + G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEYHY--ENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVSDKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|149010561|ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75] gi|147765042|gb|EDK71971.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75] gi|332077223|gb|EGI87685.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17545] Length = 648 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 406/626 (64%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G++ I V + D S TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVS Sbjct: 60 AGFSSHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+ L + + + G I+ + G + L V G + TGT V F+P Sbjct: 120 GGLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEVVGDT-DRTGTTVHFIP 178 Query: 178 SSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTTFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I Y K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|333025714|ref|ZP_08453778.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071] gi|332745566|gb|EGJ76007.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071] Length = 765 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 286/653 (43%), Positives = 393/653 (60%), Gaps = 27/653 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + +I SYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A Sbjct: 101 TSSIAEPSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 159 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 160 DTIDVTILSDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 219 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS+ +++ +K +G+++ + G+ PL G A + GT VTF D+ Sbjct: 220 GVGVSVVNALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDV 278 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222 F +++++TL R +E++FLN + I L D+R PE R +T Sbjct: 279 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVT 338 Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279 Y+GGI FV Y R + + S I ++ +S+++AM+WN GY E V F N Sbjct: 339 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 398 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R ALT + Y ++ ++ GDD REG T+++S+K+ +P+F Sbjct: 399 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 458 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++E R+ V+ V + L+ W + +P EA I++K + A+ R AAR+ARDLT Sbjct: 459 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 518 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR QAILP+RGKILN Sbjct: 519 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 578 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR DK+L +QEI LI+A G G+ D FDI KLRYHKII+M DADVDG HI TLLLT Sbjct: 579 VEKARVDKILHNQEIQALISAFGAGV-HDDFDIEKLRYHKIILMADADVDGQHINTLLLT 637 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 F FR M L+ G +Y+ +PPLY I GK + D LI L + Sbjct: 638 FLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAV 697 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + +D T + A +F+ +++ Sbjct: 698 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 748 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 6/89 (6%) Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L T+ G++ G ++QR+KGLGEM+A +L TT++ D R L +V + DA+QADD Sbjct: 678 RDALITLGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 736 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 LFS LMG++VE RR+FIQ N+ LDI Sbjct: 737 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 765 >gi|327469984|gb|EGF15448.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK330] Length = 649 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 272/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FV+YL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVTYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 43/73 (58%), Positives = 57/73 (78%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ + LMG Sbjct: 564 LDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRVNVLMG 623 Query: 783 DEVEPRREFIQEN 795 D+VEPRR++I++N Sbjct: 624 DKVEPRRKWIEDN 636 >gi|269314035|gb|ACZ36919.1| DNA gyrase B [Mycobacterium chelonae] Length = 651 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 266/643 (41%), Positives = 379/643 (58%), Gaps = 37/643 (5%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + VT+ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V D+GRGIP +H GI +V+MT+LHAGGKF+ SY VSGGLHGVG+SVVN Sbjct: 60 EDGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS+ ++L I R+G+ ++ + + L G+A TGT V F +IF +++ Sbjct: 119 ALSTKVELEILRDGHEWQQVYTASVP-GTLQQ-GAATKKTGTTVRFWADPEIFETTTYDF 176 Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219 +T+ RL+E +FLN + I L D+R + + Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSNADVTDEVVSDTAEAPKTAEEQAAESAAPHKVK 236 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 Y G+ FV +++R K + + + G + +++AM+WN GY E+V F N Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y ++ K+ ++ GDD REG +V+S+K+ +P+F Sbjct: 297 INTHEGGTHEEGFRAALTTVVNKYAKEKKLLKEKDTNLTGDDIREGLAAVISVKVGEPQF 356 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EV+S V+ N+ L W + +P +AK +V K + ++ R AAR+AR+L Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILPLRGKI+N Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M L+ +G +++ +PPLY + +S + D L+ L ++ D Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 I + +D + + + ++ A + Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637 Query: 778 SRLMGDEVEPRREF 791 S LMG++VE RR F Sbjct: 638 SILMGEDVEARRSF 651 >gi|291529243|emb|CBK94829.1| DNA topoisomerase IV subunit B [Eubacterium rectale M104/1] Length = 640 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 251/621 (40%), Positives = 353/621 (56%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YD SI IL+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G D I Sbjct: 3 KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL +GSCTV DNGRGIP +H + G+SAA V+ + LHAGGKF+ YK SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ + I R+G I+ + G+ L G TGT + FLP + Sbjct: 121 SVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTRINFLPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + +++RL+E ++LN + I DKR I GI FV LD++ Sbjct: 180 IFEKTRFKEEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIVGFVKDLDKNI 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I G ++I +++A ++ +HEN+L F NNI +GG H++G ++A T I Sbjct: 240 EKLH-DVIYFTGESEDIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K + G D R G T+V+S+K PDPRF QTK KL + + Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND + + +++ K ++ A+ +R A +A+ K S GKLA+C R Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R QAI+P+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI G +Y+ Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY I +Y+ D+ L+ Y + ++ + + + ++ A + Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + K I+ + Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 53/69 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLW+TTLNP TR L R++I D A+D+ S LMG +V PR+EFI E Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631 Query: 795 NSLPSALDI 803 ++ + LD+ Sbjct: 632 HAHDAELDV 640 >gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120] gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120] Length = 645 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 292/639 (45%), Positives = 402/639 (62%), Gaps = 14/639 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SSY AD IQ+L+GL+AV+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSSYSADQIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS V+D+GRGIP D H G SA E +MT LHAGGKF YKVSGGLHGVG+S Sbjct: 61 EINADGSVAVTDDGRGIPIDTHSRTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGIS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-Q 185 VVNALS +++ + R+ ++ + G+ L+ TGT VTF P + IF+ Sbjct: 121 VVNALSEVVEVTVWRDKKVHTQRYERGVPVTELITNPYKEARTGTSVTFKPDTQIFTNSI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR-----SPEPREITMFYKGGIEAFVSYLDRHK 240 +F+Y TL RLREL++LN+ V+I+ D R S P+ + YKGGI+ +++Y++R K Sbjct: 181 EFDYITLSGRLRELAYLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDK 240 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 +PL + I +QG R+N+ I+++++W D Y +NVL F NNI DGGTHL GL++ LTR Sbjct: 241 QPLHEEIIYVQGERNNVQIEVSLQWCTDAYTDNVLGFANNIRTIDGGTHLEGLKAVLTRT 300 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + + K K+ + ++ G+ REG T+V+S+K+PDP F QTK KL ++EVR +V+S Sbjct: 301 LNTIARKRNKIKEHEPNLSGEHVREGLTAVISVKVPDPEFEGQTKTKLGNTEVRGIVDSL 360 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 V + L+ +LE HP A I+ K + A +AAR AR+L RRK VL+ + LPGKLADCS Sbjct: 361 VGEVLTEYLEFHPGIADSILDKAIQAFKAAEAARHARELVRRKSVLESSPLPGKLADCSS 420 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 RDP +SE+++VEGDSAGGSAKQGR R QAILPLRGKILN+E+ K+ + EI LIT Sbjct: 421 RDPSESEIYIVEGDSAGGSAKQGRDRRTQAILPLRGKILNIEKTDDSKIYKNNEIQALIT 480 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG G+ + FD +LRYH+IIIMTDADVDGAHIRTL+LTFF+R +LI GF+YI P Sbjct: 481 ALGLGVKGEEFDSTQLRYHRIIIMTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACP 540 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + RG++ +Y E L+ + + G + L ++ Sbjct: 541 PLYKVERGRNYEYCYSERELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTT-----TMN 595 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + E I + + + + Sbjct: 596 PETRTLKRVEIEDAAEADRIFTILMGDRVAPRREFIETY 634 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSL 707 K E+ + I++ V + F + + I I + + Sbjct: 487 KGEEFDSTQLRYHRIII-MTDADVDGAHIRTLILTFFYRYQRALIEQGFIYIACPPLYKV 545 Query: 708 ICNGDKIKITGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 + L I ++QR+KGLGEM QLW TT+NP+TR+L RV+ Sbjct: 546 ERGRNYEYCYSERELQQAIAKFPANANYTIQRFKGLGEMMPEQLWTTTMNPETRTLKRVE 605 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 I DA++AD +F+ LMGD V PRREFI+ LDI Sbjct: 606 IEDAAEADRIFTILMGDRVAPRREFIETYGSKLNLTDLDI 645 >gi|238924637|ref|YP_002938153.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC 33656] gi|238876312|gb|ACR76019.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC 33656] Length = 640 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 252/621 (40%), Positives = 354/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YD SI IL+GL+AV+KRP MYIG GL+H+IYE++DN++DE L G D I Sbjct: 3 KKQTYDEKSIAILEGLEAVRKRPGMYIGSV-TTKGLNHLIYEIVDNSVDEHLAGACDTIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL +GSCTV DNGRGIP +H + G+SAA V+ + LHAGGKF+ YK SGGLHGVG Sbjct: 62 VTLEKNGSCTVEDNGRGIPVGMHAK-GVSAARVVFSTLHAGGKFDNSVYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS+++ + I R+G I+ + G+ L G TGT++ FLP + Sbjct: 121 SVVNALSTYMDVEISRDGYIHHDRYEKGVPVVELENGLLPTLGKTK-KTGTKINFLPDPE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F + +++RL+E ++LN + I DKR I GI FV LD++ Sbjct: 180 IFEKTRFREEDVKNRLKETAYLNPKLTIIYEDKRGDATEHIEYHEPEGIVGFVKDLDKNI 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I G +NI +++A ++ +HEN+L F NNI +GG H++G ++A T I Sbjct: 240 EKLH-DVIYFTGESENIKVEVAFQYTSEFHENILGFCNNIYNSEGGAHITGFKTAFTGII 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K + G D R G T+V+S+K PDPRF QTK KL + + Sbjct: 299 NSYARELGILKDKDANFNGADVRNGMTAVVSVKHPDPRFEGQTKTKLDNQDANRATAKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ND + + +++ K ++ A+ +R A +A+ K S GKLA+C R Sbjct: 359 NDEVPLYFDKNLEVLKTVISCAEKAAKIRKAEEKAKTNLLTKQKFSFDS-NGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R QAI+P+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRMFQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KIIIM DADVDGAHI TLLLT FFR MP LI G +Y+ Sbjct: 478 FGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFFRFMPELILEGHVYVA 537 Query: 538 KPPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY I +Y+ D+ L+ Y + ++ + + + ++ A + Sbjct: 538 MPPLYKAIPSKGEEKYLYDDAELDKYRKTHTGKFTLQRYKGLGEMDADQLWDTTLNPATR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + K I+ + Sbjct: 598 MLKRIEIEDGRLANDVTSLLM 618 Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 53/69 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLW+TTLNP TR L R++I D A+D+ S LMG +V PR+EFI E Sbjct: 572 TLQRYKGLGEMDADQLWDTTLNPATRMLKRIEIEDGRLANDVTSLLMGSDVPPRKEFIYE 631 Query: 795 NSLPSALDI 803 ++ + LD+ Sbjct: 632 HAHDAELDV 640 >gi|306833366|ref|ZP_07466493.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC 700338] gi|304424136|gb|EFM27275.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus bovis ATCC 700338] Length = 649 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 270/623 (43%), Positives = 393/623 (63%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N DGS TVSD GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVIINSDGSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I + G N +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y KS K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G + F++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++ + ++Y + LE+ +++ + + + Sbjct: 537 VYIALPPLYKMSKGKGRKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I ++ +N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGRKEQVEYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 621 NVLMGDKVEPRRKWIEDN 638 >gi|225854359|ref|YP_002735871.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae JJA] gi|225723890|gb|ACO19743.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae JJA] Length = 647 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|288905177|ref|YP_003430399.1| DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34] gi|306831248|ref|ZP_07464408.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731903|emb|CBI13468.1| Putative DNA topoisomerase IV subunit B [Streptococcus gallolyticus UCN34] gi|304426484|gb|EFM29596.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 649 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 270/623 (43%), Positives = 393/623 (63%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N DGS TVSD GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVIINSDGSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I + G N +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y KS K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G + F++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LE+ +++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I ++ +N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 621 NVLMGDKVEPRRKWIEDN 638 >gi|324991101|gb|EGC23035.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK353] Length = 649 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 273/658 (41%), Positives = 394/658 (59%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDARTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPESHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|32448028|gb|AAO16800.1| ParE [Streptococcus mitis] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMEDGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I++ + Sbjct: 595 TMNPETRTLIRVTIENLARAERR 617 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWKDGELEELRKQLGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I + ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIENLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|322392130|ref|ZP_08065592.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris ATCC 700780] gi|321145030|gb|EFX40429.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus peroris ATCC 700780] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVEDHGRGMPTGMHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLEKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y T+ RL E +FL +V +SL+DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYHTISERLNESAFLLKNVTLSLMDKRTDET--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + S KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEKLRSQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|223932477|ref|ZP_03624479.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591] gi|330832700|ref|YP_004401525.1| topoisomerase IV subunit B [Streptococcus suis ST3] gi|223898931|gb|EEF65290.1| DNA topoisomerase IV, B subunit [Streptococcus suis 89/1591] gi|329306923|gb|AEB81339.1| topoisomerase IV subunit B [Streptococcus suis ST3] Length = 649 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 271/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS +VSD GRG+P +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D+R+ E + Y+ G++ FVSYL+ Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +AM++NDGY +N+L F NN+ KDGGTH +GL+ A+T Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTLEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED + ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKTEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 61/95 (64%) Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + +KI L+ + KG +QRYKGLGEMNA QLWETT+NP+TR Sbjct: 542 LYKMSKGKGKTEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 601 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV I D ++A+ S LMGD+VEPRR++I++N Sbjct: 602 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636 >gi|293365618|ref|ZP_06612327.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC 35037] gi|307703568|ref|ZP_07640510.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037] gi|291315986|gb|EFE56430.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus oralis ATCC 35037] gi|307622975|gb|EFO01970.1| DNA topoisomerase IV, B subunit [Streptococcus oralis ATCC 35037] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEIALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|307709026|ref|ZP_07645486.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564] gi|307620362|gb|EFN99478.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK564] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 279/624 (44%), Positives = 390/624 (62%), Gaps = 21/624 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E + Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELR-KHFGKGATLQRYKGLGEMNADQLWE 593 Query: 590 FI---DDALKIDKLIKDFYPNHDK 610 + I I+D + Sbjct: 594 TTMNPETRTLIRVTIEDLARAERR 617 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKHFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|32447712|gb|AAO16799.1| ParE [Streptococcus oralis ATCC 35037] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 276/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVS L+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSSLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + ++ A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEDALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELAPNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSLEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|307704622|ref|ZP_07641524.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597] gi|307621824|gb|EFO00859.1| DNA topoisomerase IV, B subunit [Streptococcus mitis SK597] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 279/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G IY+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEE--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|55822558|ref|YP_140999.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus CNRZ1066] gi|55738543|gb|AAV62184.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus CNRZ1066] Length = 649 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 276/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G + TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKEPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + + ++LA+++NDGY +N+L F NN+ KDGGTH +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGTHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L + G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 + I I D + + + + + +L A Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|253751556|ref|YP_003024697.1| topoisomerase IV subunit B [Streptococcus suis SC84] gi|253753457|ref|YP_003026598.1| topoisomerase IV subunit B [Streptococcus suis P1/7] gi|253755717|ref|YP_003028857.1| topoisomerase IV subunit B [Streptococcus suis BM407] gi|226237524|dbj|BAH47272.1| topoisomerase IV subunit B [Streptococcus suis] gi|251815845|emb|CAZ51453.1| topoisomerase IV subunit B [Streptococcus suis SC84] gi|251818181|emb|CAZ55981.1| topoisomerase IV subunit B [Streptococcus suis BM407] gi|251819703|emb|CAR45521.1| topoisomerase IV subunit B [Streptococcus suis P1/7] gi|292558203|gb|ADE31204.1| topoisomerase IV subunit B [Streptococcus suis GZ1] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 273/623 (43%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS +VSD GRG+P +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D+R+ E + Y+ G++ FVSYL+ Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +AM++NDGY +N+L F NN+ KDGGTH +GL+ A+T Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++G + + Y + LED + ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 61/95 (64%) Query: 701 YLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + +KI L+ + KG +QRYKGLGEMNA QLWETT+NP+TR Sbjct: 542 LYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWETTMNPETR 601 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV I D ++A+ S LMGD+VEPRR++I++N Sbjct: 602 TLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636 >gi|323488988|ref|ZP_08094225.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2] gi|323397380|gb|EGA90189.1| DNA topoisomerase IV subunit B [Planococcus donghaensis MPA1U2] Length = 656 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 265/597 (44%), Positives = 372/597 (62%), Gaps = 16/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ IQN++Y+ ++IQ+L+GLDAV+KRP MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MA-KIQNTAYNEEAIQVLEGLDAVRKRPGMYIGSTD-TRGLHHLVYEIVDNSVDEALAGH 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+VT++ D S +V D GRG+PT +H G EVI+T LHAGGKF Q YK SGGL Sbjct: 59 GDKISVTIHEDNSISVRDYGRGMPTGMH-RSGKPTPEVILTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSS+L++ I R+G Y F N G L GS +TGT + FLP Sbjct: 118 HGVGASVVNALSSFLEVTIYRDGKKYRQRFENGGKPVTTLEEIGSTK-ETGTMIHFLPDE 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +NY+TL RLRE +FL ++I L D+R+ + Y+ GIEAFVSYL+ Sbjct: 177 SIFSVSKYNYETLSERLRESAFLLKGLKIELFDQRTE--AKDVFHYETGIEAFVSYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L I+G +D + I+ + ++NDGY E +L F NN+ +DGGTH +G ++A+TR Sbjct: 235 KDVLHPVA-YIEGQQDEMEIEFSFQFNDGYSETILSFVNNVRTRDGGTHETGAKAAMTRV 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K +++ G D REG +++S+++P+ +F QTK KL +SE RS+V+ Sbjct: 294 FNDYARKINLLKDKDKNLEGSDIREGLAAIVSVRIPEALLQFEGQTKSKLGTSEARSIVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 S V+ L +LEE+ + +V+ + + R +K A L GKL Sbjct: 354 SVVSQKLMYFLEENADLSASLVRKAIRAAQARLAARKAREDARNGKKRKKSDALLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+ KK+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ ++++ ++EI Sbjct: 414 PAQSRNAKKNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVVNTEKAKLEEIMKNEEIS 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+ F I+ + Y+KIIIMTDAD DGAHI+ LLLTFFFR M LI G ++ Sbjct: 474 TIIHAIGGGV-SSDFSIDDIAYNKIIIMTDADTDGAHIQVLLLTFFFRYMKPLIEAGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY +++G + V D E D I + G ++ + L Sbjct: 533 IALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGKGYTLQRYKGLGEMNADQLWE 589 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 3/116 (2%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG--PCSL-LDTIFSIGRKGISMQRY 739 F F I + ++ + + K ++ LD KG ++QRY Sbjct: 517 FFFRYMKPLIEAGKVFIALPPLYKVSKGLGKKEVIDYAWTEADLDASIKKVGKGYTLQRY 576 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 KGLGEMNA QLWETT+NP+TR+L+RV I D+++A+ + LMGD+VEPRR +I+ N Sbjct: 577 KGLGEMNADQLWETTMNPETRTLIRVTIEDSARAERGITTLMGDKVEPRRRWIESN 632 >gi|73916372|gb|AAZ93054.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916374|gb|AAZ93055.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI----CNGDKIKITGPCSL-LDTIFSIGRKGIS 735 + +F +Y R + + L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVVYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|148266452|ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392485|ref|YP_001315160.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1] gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9] gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1] Length = 640 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 290/592 (48%), Positives = 397/592 (67%), Gaps = 6/592 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MSD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GY Sbjct: 1 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A+ I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGL Sbjct: 60 ANKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R IY ++ G+ L G + TGT + F + Sbjct: 120 HGVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGE 178 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDR 238 IF+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ Sbjct: 179 IFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNE 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 239 NKEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 299 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 359 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +I Sbjct: 419 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI + Sbjct: 479 TAFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PPLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 538 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 589 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 507 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 564 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 565 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 621 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 622 VENRRQFIEDNAVYANLD 639 >gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3] gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US] gi|282931536|ref|ZP_06337035.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153] gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3] gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US] gi|281304343|gb|EFA96446.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153] Length = 651 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 282/611 (46%), Positives = 399/611 (65%), Gaps = 7/611 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE L G+A Sbjct: 13 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDECLAGFATK 71 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DGS TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 72 IEVTVEEDGSVTVQDDGRGIPVDIQKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182 G SVVNALS+ +++ + R+G Y + F +G + + L G+ + GT V F P DIF Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIF 191 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L+ R++EL+FLN ++++ DKR Y+GGI+ +V++LD ++ Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEE 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L +P+ ++G D I++++A+++ GY ++ F NNI +GG H +G ++ALTR I Sbjct: 252 KLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVIN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R+ V+ + Sbjct: 312 DYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 371 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 372 EAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 431 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 432 PEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 491 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 492 GTGFGAD-FDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 550 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + G +S + L D ++ Sbjct: 551 YQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWETTMDPE--NRR 608 Query: 601 IKDFYPNHDKT 611 + P + + Sbjct: 609 LDRVDPKYAED 619 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETT++P+ R L RV A AD +F LMG+EV PRR+FI + Sbjct: 582 TVQRYKGLGEMSADQLWETTMDPENRRLDRVDPKYAEDADAVFEMLMGNEVGPRRDFITK 641 Query: 795 NSLPS-ALD 802 N+ LD Sbjct: 642 NAKYVENLD 650 >gi|293336227|ref|NP_001168561.1| hypothetical protein LOC100382343 [Zea mays] gi|223949177|gb|ACN28672.1| unknown [Zea mays] Length = 726 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 266/597 (44%), Positives = 370/597 (61%), Gaps = 10/597 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + ++ Y A ++Q+L+ LD V+ RP MYIG T G GLHH++YE+LDNA+DE+ G+ Sbjct: 78 MHEKQVSAEYTAANVQVLEALDGVRTRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGH 136 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118 A I V L+ D S +V+DNGRGIPTD+H + S E ++T +HAGGKF Y VSG Sbjct: 137 ASKIDVVLHDDNSVSVTDNGRGIPTDMHPQTKKSCVETVLTLMHAGGKFGGSKSGYSVSG 196 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175 GLHGVG+SVVNALS L++ + R+G + S+ G L + G + GT + F Sbjct: 197 GLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSRGKPTTRLTSSTLTGETSSRQGTRIRF 256 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P DIF+ DF+++T+ R+REL+FLN + I L + + Y GG+ +V Sbjct: 257 WPDKDIFTTTIDFDFNTISSRIRELAFLNPELTIILTKEEGHTVQRNEYCYAGGLVEYVK 316 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKPL PI + D I++D++++W+ D Y + VL + N+I DGGTH+ GL+ Sbjct: 317 WLNTDKKPLH-DPIAFRKELDGITVDVSLQWSSDSYSDTVLGYANSIRTIDGGTHIDGLK 375 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 ++LTR I + +KS K ++ G+ REG T ++S+K+P P F QTK +L + EVR Sbjct: 376 ASLTRTINNLAKKSKTIKDKDITLSGEHVREGMTCIISVKVPSPEFEGQTKTRLGNPEVR 435 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +VE V + L+ +LE HP I+ K L+A AA+RAR+L R K VL +SLPGK Sbjct: 436 RIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPGK 495 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC+ +P++SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++E Sbjct: 496 LADCASANPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEE 555 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI ALG G+ + F LRYHKI+I+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 556 IQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQRALFDEGC 615 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK Y D+ L++ + + G + L Sbjct: 616 IYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPANASYHIQRFKGLGEMMPAQLWE 672 Score = 127 bits (320), Expect = 6e-27, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E E + ++ N + + K E ++ I++ V + Sbjct: 539 ILNIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVIL-TDADVDGAHIRT 597 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737 F F + I + + L + + + +Q Sbjct: 598 LLLTFFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPANASYHIQ 657 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM +QLWETT++P+ R L ++++ DA++A+ +FS LMG VE R+E IQ+ + Sbjct: 658 RFKGLGEMMPAQLWETTMDPERRLLKQLRVEDAAEANVVFSSLMGTRVEYRKELIQKAAS 717 Query: 798 PSALD 802 +D Sbjct: 718 MINID 722 >gi|284010223|dbj|BAI66711.1| DNA gyrase B [Borrelia sp. BF16] Length = 625 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 268/576 (46%), Positives = 390/576 (67%), Gaps = 6/576 (1%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 +LKGL+AV+KRP MYIG +GLHH++YE++DN+IDE+L G+ D I V +N D S TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVS-INGLHHLVYELIDNSIDEALAGFCDKIEVVINSDSSITV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+ Sbjct: 60 SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + + R+ ++ +F GI + + V G + GT V FL S+IF +++++ L RL Sbjct: 120 VFVYRDEKVFRQTFSRGIPTSEVEVVGESS-SRGTRVIFLADSEIFETLEYSFEILSRRL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 REL+FLN +QIS+ D+R E R + +Y+GGI +FV YL + + + P ++G + Sbjct: 179 RELAFLNDKLQISIEDRRLGEKRFLEFYYEGGIRSFVDYLTNNSRSIQSDPYFVEGVSNE 238 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 + +++ ++W +GY EN+L F NNI +DGGTH++G RS L + + + SKKD + Sbjct: 239 VIVNIGLKWTEGYSENILSFVNNIKTQDGGTHVTGFRSGLFKAMNEAFNRLKISKKDVPT 298 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 + DD +EG T+V+SIK+P+P+F QTK KL +S V+ +VE+ +D L + +PLE + Sbjct: 299 LTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETITHDRLLKVIANNPLEVE 358 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 II K + A+ R+AAR+AR+ R+K + +LPGKLADCS ++P + E+++VEGDSAG Sbjct: 359 IIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCSSKNPIEREIYIVEGDSAG 418 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAK GR R QAILPL GK+LNVE+ + D+++++ ++ +I +LG G+G+ F I +LR Sbjct: 419 GSAKMGRDRFFQAILPLWGKMLNVEKTKEDRVITNDKLIPIIASLGAGVGKT-FCIERLR 477 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556 YHK+IIM DADVDG+HIRTLLLTFFFR M LI N +YI PPLY + + Y D+ Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENKVHYFYDD 537 Query: 557 ESLEDYLINQ---SLSEEIELFCDSKGVISKNDLRN 589 E +L + G ++ L Sbjct: 538 IEKESFLESIGSEKRDRVNLQRYKGLGEMNPTQLWE 573 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 73/130 (56%), Gaps = 8/130 (6%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP------CSLLDTIFSIGRKGI 734 + +F +Y R + K+ S L++I S R + Sbjct: 497 LLLTFFFRYMRDLIENSHVYIAMPPLYKVKSEN-KVHYFYDDIEKESFLESIGSEKRDRV 555 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMN +QLWETT+NPDTR + V I D+ QA+ +F LMGD+VEPRREFI++ Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGIDDSMQAERIFVTLMGDDVEPRREFIEQ 615 Query: 795 NSLP-SALDI 803 N+L LD+ Sbjct: 616 NALDVVNLDV 625 >gi|156888537|gb|ABU96673.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF+ Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K +I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKVVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ ++ + +L E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 95.8 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593 I +TR KS + + + S+ DS G +K+ Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I I + + I +F SK + I ++ Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKVVIMTDADVDG 513 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 L+ R R V E + + +G K I+ L +K Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++A Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620 Query: 774 D 774 D Sbjct: 621 D 621 >gi|254820903|ref|ZP_05225904.1| DNA gyrase subunit B [Mycobacterium intracellulare ATCC 13950] Length = 677 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 271/667 (40%), Positives = 385/667 (57%), Gaps = 42/667 (6%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ Y A +I +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKKKAQDDYGASAITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKV 116 GYA+ + V + DGS V+DNGRGIP +H G +V+MT+LHAGGKF Y V Sbjct: 60 GYANKVDVRILDDGSVEVADNGRGIPVAMHA-TGAPTVDVVMTQLHAGGKFGGENSGYNV 118 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVGVSVVNALS+ L++ I R+G + + + + L G A TGT + F Sbjct: 119 SGGLHGVGVSVVNALSTRLEVDIARDGYEWSQFYDHAVP-GTLKQ-GEATKRTGTTIRFW 176 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR---------------------- 214 DIF +++++T+ RL+E++FLN + I+L D+R Sbjct: 177 ADPDIFETTEYDFETVARRLQEMAFLNKGLTINLTDERVSNEEVVDEVVSDTADAPKSAQ 236 Query: 215 --------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 + + T Y GG+ FV +++R K P+ QS I G +++AM+WN Sbjct: 237 EKAAESTAPHKVKHRTFHYPGGLVDFVKHINRTKSPIQQSIIDFDGKGPGHEVEIAMQWN 296 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G RSALT + Y + K ++ GDD REG Sbjct: 297 GGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGL 356 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +V+S+K+ +P+F QTK KL ++EV+S V+ N+ L+ W E +P +AK++V K + ++ Sbjct: 357 AAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVVVNKAVSSA 416 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK D+ LPGKLADC DP+KSEL++VEGDSAGGSAK GR Sbjct: 417 QARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSM 476 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DA Sbjct: 477 FQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDITKLRYHKIVLMADA 535 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKDEESLEDYLIN 565 DVDG HI TLLLT FR M LI NG +++ +PPLY + +S ++ + + L Sbjct: 536 DVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEA 595 Query: 566 QSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCE 625 + + D + + T + A +F+ Sbjct: 596 GQKAGKKINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQV--TLDDAAAADELFSIL 653 Query: 626 SDQEINV 632 ++++ Sbjct: 654 MGEDVDA 660 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 592 LLEAGQKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELF 650 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 651 SILMGEDVDARRSFITRNAKDVRFLDV 677 >gi|148984582|ref|ZP_01817850.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71] gi|148993664|ref|ZP_01823111.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68] gi|148997072|ref|ZP_01824726.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70] gi|149007204|ref|ZP_01830868.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74] gi|149021718|ref|ZP_01835749.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72] gi|168490285|ref|ZP_02714484.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195] gi|168493006|ref|ZP_02717149.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC3059-06] gi|168575508|ref|ZP_02721444.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016] gi|225858652|ref|YP_002740162.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 70585] gi|225861253|ref|YP_002742762.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae Taiwan19F-14] gi|298229147|ref|ZP_06962828.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255376|ref|ZP_06978962.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503141|ref|YP_003725081.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|307067449|ref|YP_003876415.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200] gi|73916362|gb|AAZ93049.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916370|gb|AAZ93053.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916384|gb|AAZ93060.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916390|gb|AAZ93063.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916394|gb|AAZ93065.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916396|gb|AAZ93066.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916398|gb|AAZ93067.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916400|gb|AAZ93068.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916402|gb|AAZ93069.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916406|gb|AAZ93071.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916408|gb|AAZ93072.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916410|gb|AAZ93073.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916434|gb|AAZ93085.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916438|gb|AAZ93087.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916440|gb|AAZ93088.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916460|gb|AAZ93098.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|147756772|gb|EDK63812.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP11-BS70] gi|147761242|gb|EDK68209.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP18-BS74] gi|147922973|gb|EDK74088.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP3-BS71] gi|147927744|gb|EDK78767.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP9-BS68] gi|147930179|gb|EDK81165.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP23-BS72] gi|183571345|gb|EDT91873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP195] gi|183576946|gb|EDT97474.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC3059-06] gi|183578568|gb|EDT99096.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae MLV-016] gi|225720805|gb|ACO16659.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 70585] gi|225728117|gb|ACO23968.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238736|gb|ADI69867.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] gi|301799848|emb|CBW32422.1| topoisomerase IV subunit B [Streptococcus pneumoniae OXC141] gi|306408986|gb|ADM84413.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Streptococcus pneumoniae AP200] gi|327390204|gb|EGE88547.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA04375] gi|332073182|gb|EGI83661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17570] Length = 647 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|332294866|ref|YP_004436789.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense DSM 14796] gi|332177969|gb|AEE13658.1| DNA topoisomerase (ATP-hydrolyzing) [Thermodesulfobium narugense DSM 14796] Length = 632 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 268/626 (42%), Positives = 385/626 (61%), Gaps = 26/626 (4%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y + I +L+G++AV+KRP MYIG G GL H++YEV+DN++DE + GY I+VT++ Sbjct: 3 YTSKDIVVLEGMEAVRKRPGMYIGSI-GIKGLLHLVYEVVDNSVDEFMAGYCKKISVTIH 61 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 T+ D+GRGIPTD+H++ +A E+++T LHAGGKFN K YKVSGGLHGVGVSVVN Sbjct: 62 KSNYVTIEDDGRGIPTDIHEQTNKNALELVLTTLHAGGKFNDKVYKVSGGLHGVGVSVVN 121 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS + R+G I+ F G + + + G + + GT++ FLP +IF ++ Sbjct: 122 ALSERFIATVYRDGKIFTQEFSRGNPVSEIKIIGES-DKHGTKIKFLPDKEIFKDITWDT 180 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 D L+ R +E++FLN ++I D+R E T + + GI FV YL+++ KPL PI Sbjct: 181 DELKARFQEIAFLNPGLEIVFSDERIGEK--ETFYDEKGILGFVEYLNKNSKPLYSPPIV 238 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 IQG + + +D+A++ D +EN++CF NNI K+GG+HL+ +++LT+ Y + Sbjct: 239 IQGEYEEVYVDIALQHVDSTYENIICFANNIATKEGGSHLTAFKNSLTKLTNQYAKDKKI 298 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 K + + G+D R G T+V+S+K+ +P F QTK KL S E ++ VE + + LE Sbjct: 299 LK-EDENFQGEDIRSGLTAVISVKLKEPLFEGQTKTKLSSLEAKNAVEKLMEKFIIE-LE 356 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA-SLPGKLADCSERDPKKSELF 428 P A +I+K L A R+AA++ARD+ R+K + SLPGKLA CS + P++ ELF Sbjct: 357 SKPEVANMIIKSSLAAKEAREAAKKARDMVRKKHDFTSSISLPGKLALCSSKKPEECELF 416 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI--- 485 +VEGDSAGGSAKQGR R QAILPLRGKILNVE+A DK+L++QEI L ++G Sbjct: 417 IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASIGLSFYEE 476 Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 S I LR+HKIIIMTDADVDG+HIRTLLLT FFR LI G ++I +PPLY I Sbjct: 477 DKPVSDWIKNLRFHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVFIAQPPLYMI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKG------------VISKNDLRNFID 592 +GK +Y ++E L D L + I+ F + L+ I+ Sbjct: 537 RKGKERRYAMNDEELNDILSEIKSPDSIQRFKGLGEMTPSQLWDVAMNPEKRTILKVCIE 596 Query: 593 DALKIDKLIKDFYP---NHDKTFIEQ 615 DA + +++ + + K FIE+ Sbjct: 597 DASEANRIFEILMGDNVEYRKAFIER 622 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 4/205 (1%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + I V D+ + LA + + +K I N Sbjct: 429 QGRDRRFQAILPLRGKILNVEKANIDKILANQEIKALAASIGLSFYEEDKPVSDWIKNLR 488 Query: 662 I--LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 ++ V + F I + ++ L +I G + + Sbjct: 489 FHKIIIMTDADVDGSHIRTLLLTLFFRYFRPLIETGKVF-IAQPPLYMIRKGKERRYAMN 547 Query: 720 CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 L+ I S + S+QR+KGLGEM SQLW+ +NP+ R++L+V I DAS+A+ +F Sbjct: 548 DEELNDILSEIKSPDSIQRFKGLGEMTPSQLWDVAMNPEKRTILKVCIEDASEANRIFEI 607 Query: 780 LMGDEVEPRREFIQENSLPS-ALDI 803 LMGD VE R+ FI+ + LD+ Sbjct: 608 LMGDNVEYRKAFIERYAREVKNLDV 632 >gi|323341105|ref|ZP_08081353.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus ruminis ATCC 25644] gi|323091526|gb|EFZ34150.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus ruminis ATCC 25644] Length = 652 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 294/601 (48%), Positives = 408/601 (67%), Gaps = 7/601 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+ D I VT+ Sbjct: 18 YDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFCDEINVTVE 76 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 D S TV DNGRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGVG SVVN Sbjct: 77 KDNSITVQDNGRGIPVDIQKKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVN 136 Query: 130 ALSSWLKLRIKREG--NIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSVQD 186 ALS+ L +++KREG N+Y + F G + NP+ V G ++ GT V F P DIF Sbjct: 137 ALSTELDVQVKREGDTNVYGIDFELGKVKNPMKVIGQCQEHEHGTRVHFCPDPDIFKETT 196 Query: 187 -FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 ++ L R+REL+FLN ++I++ DKR P + Y GGI+ +V YL++ K+ L Sbjct: 197 VYDIKVLTTRIRELAFLNKGLKITIEDKRPETPTKEEFHYAGGIKHYVEYLNKGKEVLFD 256 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 PI ++G + NI++++A+++ D +H N+L FTNNI +GGTH SG ++ALTR I Y Sbjct: 257 DPIYVEGEQRNITVEVALQYTDDFHSNLLTFTNNIHTYEGGTHESGFKTALTRVINDYAR 316 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K+ K++ ++ G+D REG T+V+SIK PDP+F QTK KL +S+ R+V + ++ S Sbjct: 317 KAGILKENDDNLSGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARAVTDKMFSETFS 376 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 ++ E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD + +DP+ S Sbjct: 377 KFMLENPSVAKRIVEKGMLAAKARVAAKRAREVTRKKNGLEISNLPGKLADNTSKDPEIS 436 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI +L TALGTG Sbjct: 437 ELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASLDRILANEEIRSLFTALGTGF 496 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G FD+ K YHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPLY + Sbjct: 497 G-QDFDVEKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMIEKGYVYIAQPPLYQVR 555 Query: 546 RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 +GK ++Y+ +E L+D L + S + + G + L D K L + Sbjct: 556 QGKMIRYIDSDEELKDVLGSLQPSPKPVVQRYKGLGEMDAEQLWETTMDPEKRRLLRVNL 615 Query: 605 Y 605 Sbjct: 616 S 616 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R LLRV ++DA +A+ +F LMGD+V PRR+FI++N Sbjct: 584 VQRYKGLGEMDAEQLWETTMDPEKRRLLRVNLSDAEEANSVFEMLMGDQVGPRRQFIEDN 643 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 644 ATFVNNLDV 652 >gi|149010518|ref|ZP_01831889.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75] gi|168490941|ref|ZP_02715084.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC0288-04] gi|182683766|ref|YP_001835513.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14] gi|225856520|ref|YP_002738031.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae P1031] gi|303254054|ref|ZP_07340171.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455] gi|303260740|ref|ZP_07346699.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293] gi|303263098|ref|ZP_07349028.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS292] gi|303267485|ref|ZP_07353336.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457] gi|303269831|ref|ZP_07355577.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458] gi|307127597|ref|YP_003879628.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae 670-6B] gi|6851037|emb|CAA91550.2| DNA topoisomerase IV [Streptococcus pneumoniae] gi|73916356|gb|AAZ93046.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916376|gb|AAZ93056.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916382|gb|AAZ93059.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916392|gb|AAZ93064.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916412|gb|AAZ93074.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916424|gb|AAZ93080.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916436|gb|AAZ93086.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916442|gb|AAZ93089.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|147764999|gb|EDK71928.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP19-BS75] gi|182629100|gb|ACB90048.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CGSP14] gi|183574686|gb|EDT95214.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC0288-04] gi|225725021|gb|ACO20873.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae P1031] gi|301793990|emb|CBW36388.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV104] gi|301801677|emb|CBW34382.1| topoisomerase IV subunit B [Streptococcus pneumoniae INV200] gi|302598990|gb|EFL66019.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS455] gi|302635751|gb|EFL66256.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP14-BS292] gi|302638108|gb|EFL68584.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae SP-BS293] gi|302640628|gb|EFL71029.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS458] gi|302642991|gb|EFL73287.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae BS457] gi|306484659|gb|ADM91528.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae 670-6B] gi|332076131|gb|EGI86597.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41301] gi|332077265|gb|EGI87727.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA17545] gi|332204858|gb|EGJ18923.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA47901] Length = 647 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|332202708|gb|EGJ16777.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA41317] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS F Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTVFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|73916358|gb|AAZ93047.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLVAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|317131014|ref|YP_004090328.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3] gi|315468993|gb|ADU25597.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3] Length = 642 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 274/586 (46%), Positives = 381/586 (65%), Gaps = 8/586 (1%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++N +N Y AD IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DNAIDE+L Sbjct: 1 MNENQLEPENKDYGADQIQVLEGLEAVRKRPGMYIGST-GSPGLHHLVYEIVDNAIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY I V + + V+D+GRGIP +H + GI A V+ T LHAGGKF YKVS Sbjct: 60 AGYCHNIHVEILPENVIRVTDDGRGIPVGIHPKMGIPAVTVVFTMLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS WL++ + EG +Y+ + G L + G G+ +TF P Sbjct: 120 GGLHGVGASVVNALSEWLEVEVAHEGKLYQQRYERGTPVTKLEIVGDTDRV-GSIITFKP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 +IF ++YD + RLRE +FLN+ ++I L DKR P R ++ Y+GGI FV Y+ Sbjct: 179 DCEIFETCVYDYDIILARLREQAFLNAGIRIVLEDKREPGGRNDSLCYEGGIREFVQYVH 238 Query: 238 --RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + L I S + ++A+++ND Y+E + F N+I +GGTH +G +SA Sbjct: 239 KRKGLTALHPDVIYFSASAETSMAEVALQYNDSYNEVIYSFANDIHTVEGGTHETGFKSA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR Y K K + G+D REG T+V+S+K+ + F QTK KL ++E+R + Sbjct: 299 LTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKLEEALFEGQTKAKLGNTEMRQL 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+ + D L + EE+P A+ I K L A+ R+AAR+ARDL+RRK LD ASLPGKLA Sbjct: 359 VDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARKARDLSRRKSALDSASLPGKLA 418 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS++D +E+++VEGDSAGGSAK+GR R+ QAILPL GK+LNVE+AR D++ ++++ Sbjct: 419 DCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLWGKMLNVEKARLDRVYGNEKLM 478 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ++TALGTGIG+D FDI+KLRY KIIIM DADVDG+HIRTLLLTFFFR M LI G +Y Sbjct: 479 PVVTALGTGIGED-FDISKLRYGKIIIMADADVDGSHIRTLLLTFFFRFMRPLIEEGHIY 537 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 I +PPL+ I++GK Y ++ + + +I+ + + Sbjct: 538 IAQPPLFKISKGKKSVYAFSDKERDTAIAEMGGKCDIQRYKGLGEM 583 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 125/366 (34%), Gaps = 31/366 (8%) Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD--VDGAHIRTLLLTFFFRQM 525 ++ TG + K I+ D+D + G +R L ++ Sbjct: 278 SFANDIHTVEGGTHETGFKSALTRVFNDYGRKYNILKDSDSKLSGEDVREGLTAVISVKL 337 Query: 526 PSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 + G + + + G + + + + + Sbjct: 338 EEALFEGQTKAKLGNTEMRQLVDGMLYDKLMTYFEENPAVARSIFDKALAANRAREAARK 397 Query: 584 KNDLRNFIDDALKIDKLIK-----DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 DL K D + + +I + +G E ++ Sbjct: 398 ARDLSRRKSALDSASLPGKLADCSDKDNTYTEIYIVEGDSAGGSAKEGRDRKFQAILPLW 457 Query: 639 ANRLNFIAEKSEKSWH-----------GSINNSDILVKRIARG---------VQEQFVLE 678 LN + ++ + G+ D + ++ G V + Sbjct: 458 GKMLNVEKARLDRVYGNEKLMPVVTALGTGIGEDFDISKLRYGKIIIMADADVDGSHIRT 517 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738 F F I I + + + I +G K +QR Sbjct: 518 LLLTFFFRFMRPLIEEGHIYIAQPPLFKISKGKKSVYAFSDKERDTAIAEMGGK-CDIQR 576 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT+NPD R++LRV + DA+ AD++F+ LMGD+VEPRREFI+ N+ Sbjct: 577 YKGLGEMDPIQLWETTMNPDGRTILRVDMEDAAAADEIFTILMGDKVEPRREFIEVNAGK 636 Query: 799 S-ALDI 803 LD+ Sbjct: 637 VRELDV 642 >gi|284010227|dbj|BAI66713.1| DNA gyrase B [Borrelia sp. Tick98M] Length = 625 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 275/576 (47%), Positives = 399/576 (69%), Gaps = 6/576 (1%) Query: 17 ILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTV 76 +LKGL+AV+KRP MYIG +GLHH++YE++DN+IDE+L G+ D I V +N D S TV Sbjct: 1 VLKGLEAVRKRPGMYIGSVS-INGLHHLVYELIDNSIDEALGGFCDKIEVIINSDNSITV 59 Query: 77 SDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLK 136 SDNGRGIPTD+H+EEGISA E+++T+LH+GGKFN+ +YKVSGGLHGVG+SVVNALSS+L+ Sbjct: 60 SDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGTYKVSGGLHGVGISVVNALSSFLE 119 Query: 137 LRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 + + R+G ++ +F GI + + + G + GT VTFL S+IF +++++TL RL Sbjct: 120 VFVYRDGKVFRQTFSRGISTSEVDIVGESS-SRGTRVTFLADSEIFETLEYSFETLSRRL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 REL+FLN +QIS+ D+R E R + +Y+GGI+AFV YL + K + P I+G + Sbjct: 179 RELAFLNDKLQISIEDRRLEEKRFLEFYYEGGIKAFVDYLTNNSKSIQSGPYFIEGISEE 238 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 + + + ++W +GY EN+L F NNI +DGGTH++G RS L + + ++S SKKD + Sbjct: 239 VIVTVGLKWTEGYSENILSFVNNIKTQDGGTHVAGFRSGLFKAMNEAYKRSKISKKDVPN 298 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 + DD +EG T+V+SIK+P+P+F QTK KL +S V+ +V++ DGL ++++PLE + Sbjct: 299 LTLDDFKEGLTAVVSIKLPEPQFEGQTKGKLGNSYVKKIVDTITYDGLLKVVDDNPLEVE 358 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 II K + A+ R+AAR+AR+ R+K + +LPGKLADC+ ++P + E+++VEGDSAG Sbjct: 359 IIFDKAIKAARAREAARKARESERKKSTFESLALPGKLADCASKNPIEREIYIVEGDSAG 418 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAK GR+R QAILPL GK+LNVE+ R DK++++ ++ +I +LG G+G+ F I +LR Sbjct: 419 GSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGVGKT-FCIERLR 477 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDE 556 YHK+IIM DADVDG+HIRTLLLTFFFR M LI N +YI PPLY + + Y D+ Sbjct: 478 YHKVIIMADADVDGSHIRTLLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENRVHYFYDD 537 Query: 557 ESLEDYLINQSL---SEEIELFCDSKGVISKNDLRN 589 E +L + + G ++ L Sbjct: 538 LEKESFLESIESEKRDKVNLQRYKGLGEMNPTQLWE 573 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 8/130 (6%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP------CSLLDTIFSIGRKGI 734 + +F +Y R + + S L++I S R + Sbjct: 497 LLLTFFFRYMRDLIENSHVYIAMPPLYKVKSENR-VHYFYDDLEKESFLESIESEKRDKV 555 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEMN +QLWETT+NPDTR + V I D+ QA+ +F LMGD+VEPRREFI++ Sbjct: 556 NLQRYKGLGEMNPTQLWETTMNPDTRKMKLVGIDDSMQAERIFVTLMGDDVEPRREFIEQ 615 Query: 795 NSLP-SALDI 803 N+L LD+ Sbjct: 616 NALDVVNLDV 625 >gi|260589534|ref|ZP_05855447.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] gi|260540102|gb|EEX20671.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583] Length = 640 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 245/621 (39%), Positives = 357/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 3 KKNTYDASSITVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCKNIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS T+ D+GRGIP +H++ G+SA ++ T LHAGGKF+ YK SGGLHGVG Sbjct: 62 VTLEKDGSATIEDDGRGIPVGMHEK-GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L +++ G I+ + GI PL G TGT + FLP + Sbjct: 121 SVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDDE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN + I D R EP EI GI F+ L++ Sbjct: 180 IFEKTRFSSTEVKSRLHETAYLNPELTILFQDNRGTEPEEIVFHEPDGIVGFIKDLNKKS 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G D I++++A ++ + + ENVL F NNI +GGTHL+G ++ T + Sbjct: 240 ECIH-EPVYFKGESDGITVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLTGFKTTFTSVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K+ + G D R G T+V+SIK P PRF QTK KL + + Sbjct: 299 NTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASKATGKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + + + + K ++ ++ +R +A+ K S GKL++C +R Sbjct: 359 GEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDS-NGKLSNCEKR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +Y+ D+++LE Y S ++ + + ++ ++ + Sbjct: 538 MPPLYKAMPTKGKEEYLYDDKALEKYRRTHKGSFTLQRYKGLGEMDAQQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + +L++ E + Sbjct: 598 MLRLVEIEDARMASEVTEILM 618 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%) Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 KG ++QRYKGLGEM+A QLWETTLNP+TR L V+I DA A ++ LMG EV PR+ Sbjct: 568 KGSFTLQRYKGLGEMDAQQLWETTLNPETRMLRLVEIEDARMASEVTEILMGTEVPPRKA 627 Query: 791 FIQENSLPSALDI 803 FI E++ + LDI Sbjct: 628 FIYEHARDAQLDI 640 >gi|237650389|ref|ZP_04524641.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974] gi|237822238|ref|ZP_04598083.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae CCRI 1974M2] gi|73916450|gb|AAZ93093.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916466|gb|AAZ93101.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|73916364|gb|AAZ93050.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916380|gb|AAZ93058.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|156888535|gb|ABU96672.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888539|gb|ABU96674.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF+ Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K +I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ ++ + +L E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593 I +TR KS + + + S+ DS G +K+ Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I I + + I +F SK + I ++ Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDG 513 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 L+ R R V E + + +G K I+ L +K Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++A Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620 Query: 774 D 774 D Sbjct: 621 D 621 >gi|227831835|ref|YP_002833542.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] gi|262183099|ref|ZP_06042520.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] gi|227452851|gb|ACP31604.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975] Length = 681 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 277/687 (40%), Positives = 399/687 (58%), Gaps = 50/687 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+E++DN++DE++ GY Sbjct: 1 MAEQ---HAYDAGSITILEGLEAVRKRPGMYIGST-GARGLHHLIWEIVDNSVDEAMAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD + VTL DG V DNGRGIP ++H G+ +V+MT+LHAGGKF+ +SY VSGGL Sbjct: 57 ADKVIVTLREDGGIEVIDNGRGIPVEMHAS-GVPTVQVVMTQLHAGGKFDSESYAVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I D + G TGT + F P + Sbjct: 116 HGVGISVVNALSTRVEADIKRDGKHWYQNFNNAIPDELVE--GDNARGTGTTIRFWPDPE 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------------- 214 IF +FNYDT+ RL+E++FLN + I L D+R Sbjct: 174 IFETVEFNYDTIARRLQEMAFLNKGLTIVLRDERAISKEQAELEEIAEAGDSAVSLTSLD 233 Query: 215 ---------------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259 + + +E+T Y G++ +V +L+++K + + + ++ + Sbjct: 234 EKEKSEEAGDGSEEKTSKKKEVTYHYPNGLQDYVEHLNKNKTAIHPTIVAFDVKGEDHEV 293 Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319 ++A++WN GY ++V F N I +GGTH G R+ALT + Y ++ K+ ++ G Sbjct: 294 EIALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLKEKDGNLSG 353 Query: 320 DDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIV 379 DDCREG +V+S+K+ DP+F QTK KL +SE+R V+ VN+ L+ W + +P EAK+I+ Sbjct: 354 DDCREGLAAVISVKVADPQFEGQTKTKLGNSEIRGFVQRSVNEHLNDWFDANPAEAKVII 413 Query: 380 KKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 K + ++ R AAR+AR+L RRK D+ LPGKLADC +D K++EL++VEGDSAGGSA Sbjct: 414 NKAVSSAHARVAARKARELVRRKSAGDLGGLPGKLADCRSKDSKRTELYIVEGDSAGGSA 473 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499 K GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI ++ FDI+KLRY K Sbjct: 474 KGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FDISKLRYDK 532 Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEES 558 I++M DADVDG HI TLLLT FR MP L+ +G +++ PPLY + GK Y + Sbjct: 533 IVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWGKGQPGYAFSDAE 592 Query: 559 LEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI 618 ++ L D N + D ++A Sbjct: 593 RDEQLAEGLEQGRKINKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRVDLEDAQRADE 652 Query: 619 SGVFNCESDQEINVSLASKLANRLNFI 645 D S ++ A + F+ Sbjct: 653 LFSILMGDDVAARRSFITRRAKDVRFL 679 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 45/82 (54%), Positives = 56/82 (68%), Gaps = 6/82 (7%) Query: 727 FSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 GRK I+ +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+LFS LMG Sbjct: 601 LEQGRK-INKDDGIQRYKGLGEMNAAELWETTLDPTTRVLRRVDLEDAQRADELFSILMG 659 Query: 783 DEVEPRREFIQENSLPSA-LDI 803 D+V RR FI + LD+ Sbjct: 660 DDVAARRSFITRRAKDVRFLDV 681 >gi|55820667|ref|YP_139109.1| DNA topoisomerase IV subunit B [Streptococcus thermophilus LMG 18311] gi|55736652|gb|AAV60294.1| DNA topoisomerase IV (subunit B) [Streptococcus thermophilus LMG 18311] Length = 649 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 276/652 (42%), Positives = 399/652 (61%), Gaps = 17/652 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D+I VTLN DGS +VSD+GRG+PT +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDVIAVTLNKDGSVSVSDSGRGMPTGMHA-MGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G++Y F N G L G A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGSVYRQRFENGGHPVTGLEKIGKAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF ++T+ RL+E +FL +V ++L D R E Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKFNTISERLKESAFLLKNVTMTLTDLRGEEEVREEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I G + + ++LA+++NDGY +N+L F NN+ KDGG+H +G +SA+T Sbjct: 239 EDKETLTP-VIYIDGDQQDFHLELALQYNDGYSDNILSFVNNVRTKDGGSHETGFKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + Y K+ K+ +++ G D REG ++V+S+ +P+ +F QTK+KL S R + Sbjct: 298 KAFNDYARKTGLLKEKDKNLEGSDYREGLSAVISLLVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +K D L GK Sbjct: 358 VDGIVSEYLTYFLMENGDLASNLVRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE---EIELFCDSKGVISKNDLRNF 590 +YI PPLY +++GK + V + + L + G ++ + L Sbjct: 537 VYIALPPLYKMSKGKGKKEVVEYAWTDGELEELRQKFGRGALLQRYKGLGEMNADQLWET 596 Query: 591 I---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLA 639 + I I D + + + + + +L A Sbjct: 597 TMNPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEETTA 648 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDASRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIYTIGAGVGADFNLDDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEVVEYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + +G +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGRGALLQRYKGLGEMNADQLWETTMNPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|331266192|ref|YP_004325822.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5] gi|326682864|emb|CBZ00481.1| DNA topoisomerase IV subunit B [Streptococcus oralis Uo5] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 279/655 (42%), Positives = 397/655 (60%), Gaps = 23/655 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+ A + TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLQKVGTAAKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DASIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTEEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R + Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V + L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVAEKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ Q G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELR-KQFGKGATLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 ++ + + V + + + + L Sbjct: 594 T-----TMNPETRTLIRVTIEDLASAERRVNVLMGDKVEPRRKWIEDNVKFTLEE 643 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D + A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLASAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|331082962|ref|ZP_08332082.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399957|gb|EGG79615.1| hypothetical protein HMPREF0992_01006 [Lachnospiraceae bacterium 6_1_63FAA] Length = 640 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 244/621 (39%), Positives = 356/621 (57%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDA SI +L+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L GY I Sbjct: 3 KKNTYDASSITVLEGLEAVRKRPGMYIGSVSR-KGLNHLIYEIVDNAVDEHLAGYCKNIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS T+ D+GRGIP +H++ G+SA ++ T LHAGGKF+ YK SGGLHGVG Sbjct: 62 VTLEKDGSATIEDDGRGIPVGMHEK-GMSAERLVFTTLHAGGKFDDSVYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV-----VTGSAGNDTGTEVTFLPSSD 180 SVVNALS++L +++ G I+ + GI PL G TGT + FLP + Sbjct: 121 SVVNALSAFLDIKVSTGGYIHHDHYERGIPTIPLEDGLLPKLGRTK-TTGTCINFLPDDE 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN + I D R E EI GI F+ L++ Sbjct: 180 IFEKTRFSSTEVKSRLHETAYLNPELTILFQDNRGVESEEIVFHEPDGIVGFIKDLNKKS 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + P+ +G D I++++A ++ + + ENVL F NNI +GGTHL+G ++ T + Sbjct: 240 ECIH-EPVYFKGESDGITVEVAFQYVNEFRENVLGFCNNIYNSEGGTHLTGFKTTFTSVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K+ + G D R G T+V+SIK P PRF QTK KL + + Sbjct: 299 NTYARELGILKEKDSNFTGADVRNGMTAVVSIKHPAPRFEGQTKTKLDNQDASKATGKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + + + + + K ++ ++ +R +A+ K S GKL++C +R Sbjct: 359 GEEIVLYFDRNLDVLKSVLACAEKSAKIRKTEEKAKTNLLTKQKYSFDS-NGKLSNCEKR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DPSLCEIFIVEGDSAGGSAKSARDRSFQAILPIRGKILNVEKATIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY+KIIIM DADVDGAHI TLLLT F+R MP LI+ G +YI Sbjct: 478 FGCGFSEGYGNDFDITKLRYNKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +Y+ D+++LE Y S ++ + + ++ ++ + Sbjct: 538 MPPLYKAMPTKGKEEYLYDDKALEKYRRTHKGSFTLQRYKGLGEMDAQQLWETTLNPETR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + +L++ E + Sbjct: 598 MLRLVEIEDARMASEVTEILM 618 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%) Query: 732 KG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 KG ++QRYKGLGEM+A QLWETTLNP+TR L V+I DA A ++ LMG EV PR+ Sbjct: 568 KGSFTLQRYKGLGEMDAQQLWETTLNPETRMLRLVEIEDARMASEVTEILMGTEVPPRKA 627 Query: 791 FIQENSLPSALDI 803 FI E++ + LDI Sbjct: 628 FIYEHARDAQLDI 640 >gi|289167743|ref|YP_003446012.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6] gi|288907310|emb|CBJ22146.1| DNA topoisomerase IV, subunit B [Streptococcus mitis B6] Length = 649 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVKDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|73916368|gb|AAZ93052.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A++ NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQHNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|15900737|ref|NP_345341.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae TIGR4] gi|111657635|ref|ZP_01408368.1| hypothetical protein SpneT_02001165 [Streptococcus pneumoniae TIGR4] gi|19864342|sp|Q59961|PARE_STRPN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|14972325|gb|AAK74981.1| topoisomerase IV, subunit B [Streptococcus pneumoniae TIGR4] gi|73916354|gb|AAZ93045.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916386|gb|AAZ93061.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916462|gb|AAZ93099.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTNEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|322376402|ref|ZP_08050895.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334] gi|321282209|gb|EFX59216.1| DNA topoisomerase IV, B subunit [Streptococcus sp. M334] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGEVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTIDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|15902800|ref|NP_358350.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae R6] gi|116516535|ref|YP_816236.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae D39] gi|15458350|gb|AAK99560.1| Topoisomerase IV subunit B [Streptococcus pneumoniae R6] gi|116077111|gb|ABJ54831.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae D39] Length = 647 Score = 558 bits (1439), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A + TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|1052804|emb|CAA58771.1| DNA gyrase B subunit [Streptococcus pneumoniae] Length = 648 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 276/626 (44%), Positives = 407/626 (65%), Gaps = 9/626 (1%) Query: 1 MSDNIQN---SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++ I+N YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L Sbjct: 1 MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKE-GLHHLVWEIVDNSIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 G+A I V + D S TV D+GRGIP + ++ G A E + T LH+GGKF YKVS Sbjct: 60 AGFASHIQVFIEPDDSITVVDDGRGIPVGIQEKTGRPAVETVFTVLHSGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG+SVVNALS+ L + + + G I+ + G + L + G + TGT V F P Sbjct: 120 GGLHGVGLSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDT-DKTGTTVHFTP 178 Query: 178 SSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 IF+ F++D L R++EL+FLN +QIS+ DKR + Y+GGI ++V Y+ Sbjct: 179 DPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYI 238 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +K + +PI G D+I++++AM++ GYHENV+ F NNI +GGTH G R+AL Sbjct: 239 NENKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTAL 298 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR I SY K+ K ++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + Sbjct: 299 TRVINSYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKIT 358 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 ++ S +L E+P AK IV+K + A+ R AA+RAR++TR+K L+I++LPGKLAD Sbjct: 359 NRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLAD 418 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS +P ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI + Sbjct: 419 CSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRS 478 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L TA+GTG G + FD++K RY K+++MTDADVDGAHIRTLLLT +R M ++ G++YI Sbjct: 479 LFTAMGTGFGAE-FDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYI 537 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PP+YG+ G ++ + ++ + ++L +K I + +DD Sbjct: 538 AQPPIYGVKVGSEIKEYIQPGADQEIKLQEAL--ARYSEGRTKPTIQRYKGLGEMDDHQL 595 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + + ++ A + Sbjct: 596 WETTMDPEHRLMARVSVDDAAEADKI 621 Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I L +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 546 KVGSEIKEYIQPGADQEIK-LQEALAR-YSEGRTKPTIQRYKGLGEMDDHQLWETTMDPE 603 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LD+ Sbjct: 604 HRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV 648 >gi|73916378|gb|AAZ93057.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL + +SL DKRS E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNATLSLTDKRSDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|73916360|gb|AAZ93048.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916432|gb|AAZ93084.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 279/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKRS E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRSDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|307278016|ref|ZP_07559100.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860] gi|306505413|gb|EFM74599.1| DNA topoisomerase IV, B subunit [Enterococcus faecalis TX0860] Length = 685 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 270/664 (40%), Positives = 386/664 (58%), Gaps = 16/664 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D R E +E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDGRGEELKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + V +Y E+ ++ + ++ Sbjct: 536 IALPPLYKVSKGTGKKSVI------EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQ 589 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + + I+ A + + + + F E+ Sbjct: 590 LWETTMDPETRTLIRVRIDDAAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDR 649 Query: 656 SINN 659 S + Sbjct: 650 SEED 653 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 378 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 498 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 558 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 618 TTLMGDKVEPRRKWIEQH 635 >gi|268316832|ref|YP_003290551.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] gi|262334366|gb|ACY48163.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] Length = 648 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 241/617 (39%), Positives = 357/617 (57%), Gaps = 14/617 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ ++Y IQ+L+GL+ V+KRP MYIG T G+ GLHH+++E++DNA+DE++ G+ Sbjct: 1 MAE--LAATYTGKDIQVLEGLEPVRKRPGMYIGGT-GKPGLHHLLWEIVDNAVDEAVNGF 57 Query: 61 ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A +I VTL+ DG S TV+DNGRGIP D H + I E+I+T LHAGGKF++K+Y SGG Sbjct: 58 ASLIEVTLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGG 117 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L +KR+G Y+ F+ G L V TGT + F P Sbjct: 118 LHGVGASVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAENTRGTGTSIYFRPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF +F+ ++ L ++LN +++I D+ S E ++GGI +++ L Sbjct: 178 EIFETTEFDPVWIREHLEIKTYLNRNLKIVFKDETSGER--YEFHHEGGIVEYLARLVEE 235 Query: 240 KKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + P + RD +++A++W + E + F N IP +GGTH G + A Sbjct: 236 QGARVVHPEPFVLIQEELRDGARLEVALQWTEAPRELIKSFVNGIPTTEGGTHEQGFKEA 295 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 + + +Y+E ++ V DD REG +V+++ M +P+F QTKEKL + E RS+ Sbjct: 296 VRSAVRAYMETHDLLPRN-LEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSL 354 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKL 414 V V L +L HP A+ IV +++ A+ R A+R A RR+ +LPGKL Sbjct: 355 VIGAVRLDLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKL 414 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ +P++ ELF+VEGDSAGGSAKQ R R QA+LPLRGK+LN E+A K+ ++E+ Sbjct: 415 ADCTSTNPEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKEL 474 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 ++ ALG GIG D+++LRYHKII++ DAD DG HI TLLLTFF+R M LI NG + Sbjct: 475 SNIVQALGCGIGDKI-DLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHV 533 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 Y+ +PPLY I GK + D+ + L + + + + + + Sbjct: 534 YVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRE- 592 Query: 595 LKIDKLIKDFYPNHDKT 611 +D + Sbjct: 593 TTLDPRKRRLLRVEIPE 609 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKG-----I 734 + +F +Y R + K D I RK + Sbjct: 515 LLLTFFYRYMRPLIENGHVYVAQPPLYRIDAGKETYWALDDADRDRILQELRKKRKNVQV 574 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI-TDA-SQADDLFSRLMGDEVEPRREFI 792 +QR+KGLGEM L ETTL+P R LLRV+I DA + + LMG +V R FI Sbjct: 575 EIQRFKGLGEMMPDTLRETTLDPRKRRLLRVEIPEDARLLTEQTITELMGRDVSARFRFI 634 Query: 793 QENSLPS---ALDI 803 EN+ ALD+ Sbjct: 635 MENAAQVDAEALDV 648 >gi|327440233|dbj|BAK16598.1| type IIA topoisomerase, B subunit [Solibacillus silvestris StLB046] Length = 657 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 269/667 (40%), Positives = 385/667 (57%), Gaps = 16/667 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M N SY+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MVKNQTGISYNEDAIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S +V D+GRG+PT +H + G E+I T LHAGGKF Q YK SGGL Sbjct: 60 GNHIIVKIHEDNSISVRDHGRGMPTGMH-KMGKPTPEIIFTILHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSS+L++ I R+ IY F G L + G +TGT V FLP Sbjct: 119 HGVGSSVVNALSSFLEVTIYRDNQIYRQRFEQGGKPATSLDMIGKTK-ETGTLVHFLPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFSV +NYDTL RLRE +FL ++I LID R E + +Y+ GIEAFV+YL+ Sbjct: 178 SIFSVIKYNYDTLAERLRESAFLLKGLKIELIDAR-GEGQHEIFYYENGIEAFVTYLNEE 236 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L ++G+ I ++ A+++NDGY E +L F NN+ +DGGTH +G ++ALTR Sbjct: 237 KDVLHP-VKYVEGTIQEIEVEFALQFNDGYSETILSFVNNVRTRDGGTHETGAKTALTRV 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG T+++S+++P+ +F QTK KL +SE RS V+ Sbjct: 296 FNEYARKIGLLKEKDKNLEGTDIREGLTAIVSVRIPENLLQFEGQTKGKLGTSEARSAVD 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + V++ L LEE+ + +V+K + A VR+AAR+ARD R K L GKL Sbjct: 356 TVVSEQLMYVLEENAELSASLVRKAIRAQQVREAARKARDDARNGKKRKSSTLLSGKLTP 415 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ ++EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ ++ ++EI T Sbjct: 416 AQSKNASRNELYLVEGDSAGGSAKQGRDRTFQAILPLRGKVINTEKAKLQDIMKNEEIAT 475 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G D F + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 476 IIHTIGAGVGAD-FSVEDAAYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYI 534 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +++G ++ Y + +I + ++ Sbjct: 535 ALPPLYKVSKGS------GKKQELMYAWTEQELSAATKKIGKGYIIQRYKGLGEMNADQL 588 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 D + + IE + + + + +NF E+ Sbjct: 589 WDTTMNPETRTLIRVKIEDGARAERRITTLMGDKVEPRRKWIESNVNFGMEEDASILENE 648 Query: 657 INNSDIL 663 + + Sbjct: 649 FIQHEEV 655 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++A ++ I + D +V + Sbjct: 456 VINTEKAKLQDIMKNEEIATIIHTIGAGVGADFSVEDAAYDKVVIMTDADTDGAHIQVLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I + ++ + + G K ++ L IG KG + Sbjct: 516 LTFFYRYMRPLIEAGKVYIALPPLYKVSKGSGKKQELMYAWTEQELSAATKKIG-KGYII 574 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QRYKGLGEMNA QLW+TT+NP+TR+L+RVKI D ++A+ + LMGD+VEPRR++I+ N Sbjct: 575 QRYKGLGEMNADQLWDTTMNPETRTLIRVKIEDGARAERRITTLMGDKVEPRRKWIESN 633 >gi|168484709|ref|ZP_02709661.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1873-00] gi|172042106|gb|EDT50152.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1873-00] gi|332204006|gb|EGJ18073.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae GA47368] Length = 647 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVAIQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|221231635|ref|YP_002510787.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669] gi|73916416|gb|AAZ93076.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916420|gb|AAZ93078.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916422|gb|AAZ93079.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916428|gb|AAZ93082.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916430|gb|AAZ93083.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916444|gb|AAZ93090.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916446|gb|AAZ93091.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|220674095|emb|CAR68613.1| topoisomerase IV subunit B [Streptococcus pneumoniae ATCC 700669] Length = 647 Score = 558 bits (1438), Expect = e-156, Method: Composition-based stats. Identities = 276/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|156888541|gb|ABU96675.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888543|gb|ABU96676.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] gi|156888545|gb|ABU96677.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis] Length = 621 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 276/617 (44%), Positives = 395/617 (64%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF+ Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K+ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKEV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +PI G + I++++AM++ YHE V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K +I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGWEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ ++ + +L E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 95.5 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 83/241 (34%), Gaps = 15/241 (6%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF--CDSKGVISKNDLRNFIDD 593 I +TR KS + + + S+ DS G +K+ Sbjct: 394 IAAKRAREVTRKKSGWEISNLPGKLADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQA 453 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 L I I + + I +F SK + I ++ Sbjct: 454 ILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARYQKLVIMTDADVDG 513 Query: 654 HGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK 713 L+ R R V E + + +G K I+ L +K Sbjct: 514 AHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIEQEEQLKTALEK 573 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++A Sbjct: 574 YSV-------------GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEA 620 Query: 774 D 774 D Sbjct: 621 D 621 >gi|319757988|gb|ADV69930.1| topoisomerase IV subunit B [Streptococcus suis JS14] Length = 647 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 273/623 (43%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHHM++E++DNA+DE+L G Sbjct: 1 MAKKEIDINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GNGLHHMVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS +VSD GRG+P +H G EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLSVSDRGRGMPVGMHA-TGKPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFEQGGKPVTTLEKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D+R+ E + Y+ G++ FVSYL+ Sbjct: 179 DDTIFSTTDFKFNTIAERLKESAFLLKQVTMTLTDERTGE--QEEYHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +AM++NDGY +N+L F NN+ KDGGTH +GL+ A+T Sbjct: 237 EDKETLTPVL-YFEGEDAGFQVQVAMQYNDGYSDNILSFVNNVRTKDGGTHETGLKLAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 296 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVSDKLTFFLLENGELASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGSD-FTIEDVNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY +++G + + Y + LED + ++ + + + Sbjct: 535 GYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFILQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIKITGPCSLLDTIFSIGRKGIS 735 + +F +Y R +KI L+ + KG Sbjct: 517 LLLTFFYRYMRPLVEAGRGYIALPPLYKMSKGKGKAEKIAYAWSDGELEDLRKDFGKGFI 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ S LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVSVLMGDKVEPRRKWIEDN 636 >gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens] Length = 640 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 270/587 (45%), Positives = 370/587 (63%), Gaps = 15/587 (2%) Query: 16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75 Q+L+GL+AV+KRP MYIG T G GLHH++YEVLDNAIDE+ G+A + V ++ DGS + Sbjct: 2 QVLEGLEAVRKRPGMYIGST-GTKGLHHLVYEVLDNAIDEAQAGFASTVDVVIHTDGSVS 60 Query: 76 VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSS 133 +SDNGRGIPTD+H SA E ++T LHAGGKF +S Y VSGGLHGVG+SVVNALS Sbjct: 61 ISDNGRGIPTDVHPVTRKSALETVLTVLHAGGKFGGESSGYSVSGGLHGVGISVVNALSE 120 Query: 134 WLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSD----IFSVQD 186 + + + R G+ Y SF G +PL TGT V FLP S + Sbjct: 121 RVDVTVWRNGHEYRQSFEFGKAVSPLSAFPLPNDQKGRTGTRVKFLPDKQGKQLFTSTTE 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+T+ R REL+FLN V I+L+ + S + R + GG+ +V +L+ K+ L Sbjct: 181 FDYNTISGRARELAFLNPQVTINLMQEHANSEKVRSNAYHFSGGLNEYVLWLNNDKERLH 240 Query: 245 QSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI I R+ ++ID+A++W+ D Y + +L + N+I DGGTHL G+++A+TR + + Sbjct: 241 -EPISIHREREGVAIDVALQWSADQYTDTILGYANSIRTSDGGTHLDGMKAAVTRTLNTL 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K+ ++ GD REG T V+++K+P+P F QTK +L + EVR +V+ V + Sbjct: 300 GRKAKILKEKDENLSGDHAREGLTCVVAVKVPNPEFEGQTKTRLGNPEVRRIVDQAVQEL 359 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 ++ +LE+HP + I+ K L A AA++AR+L RRK VL + LPGKL+DCS DP+ Sbjct: 360 VTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTDPR 419 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 +E+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER + +QEI LI ALG Sbjct: 420 NAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGL 479 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G+ + F + LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G +Y+ PPLY Sbjct: 480 GVKGEEFSKDSLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEAGCIYVGVPPLYK 539 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 + RGK Y +E L++ L + G + L Sbjct: 540 VERGKQAHYCFNESDLKNVLKTFPSNASYNIQRFKGLGEMMPQQLWE 586 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 9/189 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E + + ++ N + + K E+ S+ I++ V + Sbjct: 453 ILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKDSLRYHKIIIL-TDADVDGAHIRT 511 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI-GRKGISMQ 737 F F + + I + + L + + + ++Q Sbjct: 512 LLLTFFFRYQRALFEAGCIYVGVPPLYKVERGKQAHYCFNESDLKNVLKTFPSNASYNIQ 571 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796 R+KGLGEM QLWETTL+P R L + + DA++A +FS LMGD+VEPR+E I+ N+ Sbjct: 572 RFKGLGEMMPQQLWETTLDPQQRMLKLLTLEDAAEASMMFSTLMGDKVEPRKELIRTNAS 631 Query: 797 ---LPSALD 802 L LD Sbjct: 632 RMKLE-NLD 639 >gi|312869074|ref|ZP_07729248.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3] gi|311095320|gb|EFQ53590.1| DNA topoisomerase IV, B subunit [Lactobacillus oris PB013-T2-3] Length = 658 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 274/660 (41%), Positives = 386/660 (58%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YD SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MTTKKVK--YDESSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D S TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS+ L L I R+ Y+ F N G L G D+GT VTF P Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRADSGTTVTFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ ++Y+TL +RLRE +FL ++I L DKR + +E + GI+ FVSYL+ Sbjct: 177 PAIFTTTTYDYNTLANRLRESAFLLKGIKIVLTDKRPGQEQENVFQFNDGIQEFVSYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L ++ G + +++A ++NDGY EN+L F NN+ DGGTH +G RSA T+ Sbjct: 237 GKDTLGKTL-YFDGKDQGVEVEVAAQYNDGYSENLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y ++ K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V Sbjct: 296 TFNEYAKRVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 ++ V++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 356 DTIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ Sbjct: 416 TPAQSKNANKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G G + FD+ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGAGSE-FDVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKV 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589 YI PPLY + + + Y + L L + G ++ + L Sbjct: 535 YIALPPLYRLQQGKGAKTKITYAWTNDELTK-LTKRMGKTAQLQRFKGLGEMNADQLWET 593 Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 I+DA ++ + N + E + F DQE + +ASK Sbjct: 594 TMNPETRTLIRVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLSDDQESDELVASK 653 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNANKNELFLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + + +N Sbjct: 438 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFDVEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + ++ + L G K KIT Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGKGAKTKITYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + K +QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ Sbjct: 558 WTNDELTKLTKRMGKTAQLQRFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 618 TTLMGNKVEPRREWIEEN 635 >gi|148988271|ref|ZP_01819718.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73] gi|147925952|gb|EDK77026.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae SP6-BS73] Length = 647 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGENNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLIKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN] gi|282934238|ref|ZP_06339515.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN] gi|281301712|gb|EFA93979.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1] gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] Length = 651 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 279/589 (47%), Positives = 392/589 (66%), Gaps = 5/589 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE L G+A Sbjct: 13 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDECLAGFATK 71 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DGS TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 72 IEVTVEEDGSVTVQDDGRGIPVDIQEKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIF 182 G SVVNALS+ +++ + R+G Y + F +G + + L G+ GT V F P DIF Sbjct: 132 GASVVNALSTKVEVTVMRDGKKYFIDFDHGRVKHELKQIGTVDPGQHGTIVHFYPDPDIF 191 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L+ R++EL+FLN ++++ DKR Y+GGI+ +V++LD+ ++ Sbjct: 192 TETIVFDDKILKKRIQELAFLNKGLKLTFTDKRKSSAETDVYHYEGGIKEYVAFLDKKEE 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L +P+ ++G D I++++A+++ GY ++ F NNI +GG H +G ++ALTR I Sbjct: 252 KLFDTPVYVEGDYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVIN 311 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R+ V+ + Sbjct: 312 DYARKAKIFKDSDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 371 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 372 EAFSKFLLENPSVGRKIVEKGQLAEKARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 431 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 432 PEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 491 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 492 GTGFGAD-FDVKKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 550 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y+ +E L DYL + S + G +S + L Sbjct: 551 YQVKQGKIIKYLDSDEELHDYLGSLQPSPKPTVQRYKGLGEMSADQLWE 599 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 1/69 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETT++P+ R L RV A AD +F LMG+EV PRR+FI + Sbjct: 582 TVQRYKGLGEMSADQLWETTMDPENRRLDRVDPAYAEDADAVFEMLMGNEVGPRRDFITK 641 Query: 795 NSLPS-ALD 802 N+ LD Sbjct: 642 NAKYVENLD 650 >gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana] Length = 760 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 263/627 (41%), Positives = 368/627 (58%), Gaps = 42/627 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ GYA Sbjct: 82 ETTTSKGYSSEQIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGYAS 140 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 + V L+ DGS +V DNGRGIPTDLH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 141 KVDVVLHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGL 200 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ + R+G ++ ++ G L + GT + F P Sbjct: 201 HGVGLSVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWP 260 Query: 178 SSD-------------------------------IFSVQDFNYDTLQHRLRELSFLNSSV 206 + + +F+++T+ R+REL+FLN V Sbjct: 261 DKEGFACFPLLTTLPKPKLDLMINFPLWNELFSVFTTAIEFDHNTIAGRIRELAFLNPKV 320 Query: 207 QISLIDKRS--PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ISL + + + + GG+ +VS+L+ K P+ + + ++D+A++ Sbjct: 321 TISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLG-FRREINGATVDVALQ 379 Query: 265 WN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 W D Y + +L + N+I DGGTH+ G++++LTR + + +KS K+ S+ G+ R Sbjct: 380 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVR 439 Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383 EG T ++S+K+P+P F QTK +L + EVR +V+ V + L+ +LE HP + I+ K L Sbjct: 440 EGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKSL 499 Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443 +A AA+RAR+L R K VL +SLPGKLADCS DP+ SE+F+VEGDSAGGSAKQGR Sbjct: 500 NAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQGR 559 Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503 R QAILPLRGKILN+ER M ++EI LI LG G+ + F LRYHKIII+ Sbjct: 560 DRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIIIL 619 Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563 TDADVDGAHIRTLLLTFFFR +L G +Y+ PPL+ + RGK+ QY D+ L+ Sbjct: 620 TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKIT 679 Query: 564 INQSLSEE-IELFCDSKGVISKNDLRN 589 N + G + L Sbjct: 680 SNFPANASYNIQRFKGLGEMMPEQLWE 706 Score = 125 bits (315), Expect = 3e-26, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562 D + G H+R L ++P+ G P + I +Y+ + L Sbjct: 430 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPD 489 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN----------------------FIDDALKIDKL 600 ++ +S+ + + + +L + + ++ Sbjct: 490 ILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGD 549 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655 + QA++ + + + + K N I K E Sbjct: 550 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 609 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ I++ V + F F + + I + + + Sbjct: 610 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQY 668 Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L I S ++QR+KGLGEM QLWETT+NP+TR L ++ + D ++A Sbjct: 669 CYDDAD-LKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEA 727 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPSA---LDI 803 + FS LMG V+ R+E I+ + LDI Sbjct: 728 NMTFSSLMGARVDVRKELIKNAATRINLQRLDI 760 >gi|322411454|gb|EFY02362.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 650 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 278/617 (45%), Positives = 397/617 (64%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EEKAQDYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P S+IF+ Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDSEIFT 186 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K+ Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKEV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +PI G + I++++AM++ YHE V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFDTPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ ++ + +L E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 44/74 (59%), Positives = 58/74 (78%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|269314037|gb|ACZ36920.1| DNA gyrase B [Mycobacterium immunogenum] Length = 651 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 265/643 (41%), Positives = 377/643 (58%), Gaps = 37/643 (5%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA + VT+ Sbjct: 1 YSADSITILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYATTVEVTML 59 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V D+GRGIP +H GI +V+MT+LHAGGKF+ SY VSGGLHGVG+SVVN Sbjct: 60 ADGGIQVKDDGRGIPVAMHAS-GIPTVDVVMTQLHAGGKFDSDSYAVSGGLHGVGISVVN 118 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS+ ++L I R+G+ + + + L G+ TGT V F +IF +++ Sbjct: 119 ALSTKVELEILRDGHEWNQVYTASVP-GTLQQGGATK-KTGTTVRFWADPEIFETTTYDF 176 Query: 190 DTLQHRLRELSFLNSSVQISLIDKR------------------------------SPEPR 219 +T+ RL+E +FLN + I L D+R + + Sbjct: 177 ETVARRLQEQAFLNKGLTIKLTDERVSDSDVTDEVVRDTAEAPKTAEEQAAESAAPHKVK 236 Query: 220 EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNN 279 Y G+ FV +++R K + + + G + +++AM+WN GY E+V F N Sbjct: 237 NRVFHYPDGLVDFVKHINRTKSAIHTTIVDFSGKGEGHEVEIAMQWNAGYSESVHTFANT 296 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y ++ K+ ++ GDD REG +V+S+K+ +P+F Sbjct: 297 INTHEGGTHEEGFRAALTSVVNKYAKEKKLLKEKDSNLTGDDIREGLAAVISVKVGEPQF 356 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++EV+S V+ N+ L W + +P +AK +V K + ++ R AAR+AR+L Sbjct: 357 EGQTKTKLGNTEVKSFVQKVCNEQLQHWFDSNPADAKTVVNKAVSSAQARIAARKARELV 416 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK DI LPGKLADC DP KSEL++VEGDSAGGSAK GR QAILPLRGKI+N Sbjct: 417 RRKSATDIGGLPGKLADCRSTDPSKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIIN 476 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR D++L + E+ +ITALGTGI D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 477 VEKARIDRVLKNTEVQAIITALGTGI-HDEFDIAKLRYHKIVLMADADVDGQHISTLLLT 535 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M L+ +G +++ +PPLY + +S + D L+ L ++ D Sbjct: 536 LLFRFMRPLVEHGHIFLAQPPLYKLKWQRSQPEFAYSDRERDGLMEAGLKAGKKINKDDG 595 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 I + +D + + + ++ A + Sbjct: 596 --IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 636 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 579 LMEAGLKAGKK-INKDDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 637 Query: 778 SRLMGDEVEPRREF 791 S LMG++VE RR F Sbjct: 638 SILMGEDVEARRSF 651 >gi|94988237|ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429] gi|94541745|gb|ABF31794.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429] Length = 650 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|251782113|ref|YP_002996415.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390742|dbj|BAH81201.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 650 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 278/617 (45%), Positives = 397/617 (64%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EEKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFATH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV DNGRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IQVFIEADNSITVVDNGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P S+IF+ Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDSEIFT 186 Query: 184 VQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTEFDYKVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ YHE V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYHEVVMSFANNIHTHEGGTHEQGFRTALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENDDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 SQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ ++ + +L E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYIQPGIEQEEQLKTAL--EKYSVGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 44/74 (59%), Positives = 58/74 (78%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEPRR Sbjct: 577 GRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|160878454|ref|YP_001557422.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans ISDg] gi|160427120|gb|ABX40683.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans ISDg] Length = 642 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 238/596 (39%), Positives = 361/596 (60%), Gaps = 20/596 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y+ I +L+GL+AV+KRP MYIG T G GLHH+I+E+LDN IDE L G+ + + +T Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGST-GTRGLHHLIWEILDNGIDEHLAGFCNQLEIT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L DG +++D+GRG+P D+H + I A V+ T LHAGGKF YKVSGGLHGVG SV Sbjct: 61 LLKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLV-----VTGSA-GNDTGTEVTFLPSSD 180 VNALS+ + + I+R+G IY + + G L V G +DTGT+VTF P Sbjct: 121 VNALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPT 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +F +T+ +L+E++FLN ++ I D+ + + T + GI++FVSY++R Sbjct: 181 IFETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTG--FKKTYCEEFGIKSFVSYINREA 238 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + PI I+G +I +++A+++ + + E + + N I DGGT ++G ++ALTR + Sbjct: 239 SVIHEEPIYIEGKSGDIEVEVALQYTNSFSEQINAYCNRINVVDGGTLVTGFKTALTRVM 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ + G D R G +++SIK PDP+F QTK KL +++ +S VE Sbjct: 299 NQYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVF 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + ++ + +++ K I++ + + R A+ +AR ++ L+ KLA CS + Sbjct: 359 SGEVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQ--LNDIDTKSKLASCSSK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 P++ E+++VEGDSAGG+ K R+R QA+LPLRGKI+NVE+A +K+L + EI ++I + Sbjct: 417 KPEECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIAS 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G GIG+D FDI+KLRY KIII+TDADVDGAHI TLLLTFF+R MP LI G +Y PP Sbjct: 477 FGCGIGED-FDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPP 535 Query: 541 LYGIT-------RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + + K +Y+ ++ L+ + N G + L Sbjct: 536 LYRVEYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQLWE 591 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 45/105 (42%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 700 NYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPD 758 Y T + LD + K I +QRYKGLGEM+A QLWETTLNP+ Sbjct: 540 EYETSEGKKKKKFEYIYNDFE--LDKFRKNTKHKIIHIQRYKGLGEMDAEQLWETTLNPE 597 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 TR L +V ITD AD+ + LM + V PRR FI + + + LDI Sbjct: 598 TRVLAQVSITDTVDADETTTLLMSNNVPPRRAFIMDEAKYAKLDI 642 >gi|332366837|gb|EGJ44578.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis SK1059] Length = 649 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 272/658 (41%), Positives = 395/658 (60%), Gaps = 23/658 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GL AV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEININNYNDDAIQVLEGLVAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV+D+GRG+P H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVADHGRGMPVGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF Y+T+ RL+E +FL +V++SL D+R+ E + Y+ G+E FVSYL+ Sbjct: 179 DDTIFSTTDFKYNTIAERLKESAFLLKNVRLSLTDERTGEE--VEFHYENGVEDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +A+++NDGY +N+L F NN+ KDGGTH +GL++A+T Sbjct: 237 EDKETLTPVL-YFEGEESGFQVQVALQYNDGYADNILSFVNNVRTKDGGTHETGLKTAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R Sbjct: 296 KAMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEAHLQFEGQTKDKLGSPLARPA 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDSIVSDKLTFFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G F + + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVG-TDFTLEEANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGR 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + L+D + G ++ + L Sbjct: 535 VYIALPPLYKMSKGKGKSEVVEYAWTDGELDDLRRKFG-KGAMLQRYKGLGEMNADQLWE 593 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 ++ + + V + + + + L E Sbjct: 594 T-----TMNPDTRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEESGE 646 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGTDFTLEEANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + R+ + + K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGRVYIALPPLYKMSKGKGKSEVVEYA 558 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D ++A+ Sbjct: 559 WTDGELDDLRRKFGKGAMLQRYKGLGEMNADQLWETTMNPDTRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|284988639|ref|YP_003407193.1| DNA gyrase subunit B [Geodermatophilus obscurus DSM 43160] gi|284061884|gb|ADB72822.1| DNA gyrase, B subunit [Geodermatophilus obscurus DSM 43160] Length = 680 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 264/629 (41%), Positives = 364/629 (57%), Gaps = 46/629 (7%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + Q +Y SI +L+GL+AV+KRP MYIG T GE GLHHM++EV+DN++DE+L G+ D Sbjct: 7 TDAQADAYSGSSITVLEGLEAVRKRPGMYIGST-GERGLHHMVWEVVDNSVDEALAGHCD 65 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + VTL DG V DNGRGIP D+H E EV+MT LHAGGKF+ KSY VSGGLHG Sbjct: 66 TVRVTLLPDGGVRVEDNGRGIPVDMHPVEKRPTVEVVMTILHAGGKFDGKSYAVSGGLHG 125 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGV+VVNALS+ L +RI R+G + + PL G GT++TF IF Sbjct: 126 VGVTVVNALSTELDVRIWRDGTEWHQHYTASEP-GPLEKVGRTT-KRGTQITFWADPGIF 183 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------------- 216 +++DT+ RL+E++FLN ++I L D+R Sbjct: 184 ETTTYSFDTISRRLQEMAFLNQGLRIVLRDERPGQGKAETGMAEEVSLAEAAPAPTSEEP 243 Query: 217 --EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS-----RDNISIDLAMRWNDGY 269 EP EIT Y+ G+ FV++++R K + +S I +S+D+AM+W++ Y Sbjct: 244 AFEPTEITYLYEDGLRDFVAHINRTKTAIHRSVIGFSAEGTGKNDMAMSVDIAMQWSEAY 303 Query: 270 HENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSV 329 E+V F N I +GGTH G R+ALT + Y E K + G+D REG ++ Sbjct: 304 SESVHTFANTINTHEGGTHEEGFRAALTSIVNRYAEDKKLFKSKDEKLTGEDIREGLAAI 363 Query: 330 LSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVR 389 +S+K+ DP+F QTK KL ++EV+ V+ N+ + W E +P EAK I+ K A Sbjct: 364 VSVKLGDPQFEGQTKTKLGNTEVKGFVQRVCNEQIGHWFEANPAEAKQIITKASSA-ARA 422 Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQA 449 A + RK L+ LPGKLADC DP+ SE+++VEGDSAGGSAK GR QA Sbjct: 423 RRAAQQARQLARKNPLNSTGLPGKLADCRSTDPRNSEVYIVEGDSAGGSAKSGRDSMFQA 482 Query: 450 ILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD 509 ILP+RGKI+NVE+AR D++L + E+ ++ITA GTGI D FD++KLRYHKI++M DADVD Sbjct: 483 ILPIRGKIINVEKARIDRVLKNTEVQSMITAFGTGI-HDEFDLSKLRYHKIVLMADADVD 541 Query: 510 GAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLS 569 G HIRTLLLT FR M L+ G +Y+ +PPLY I G + ++Y+ Sbjct: 542 GQHIRTLLLTLLFRFMRPLVEAGHVYLAQPPLYKIKWGGKV--------GDEYVYTDKEK 593 Query: 570 EEIELFCDSKGVISKNDLRNFIDDALKID 598 E G K+D +++ Sbjct: 594 EGALKLGAEAGRRIKDDAIQRFKGLGEMN 622 Score = 148 bits (374), Expect = 4e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA++LWETT+NP+TR LL+V + DA+ AD+LFS LMG++V+ RR FI N Sbjct: 612 IQRFKGLGEMNATELWETTMNPETRVLLQVTLEDAATADELFSVLMGEDVDARRSFITRN 671 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 672 AKDVRFLDV 680 >gi|160901666|ref|YP_001567247.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95] gi|160359310|gb|ABX30924.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95] Length = 641 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 259/638 (40%), Positives = 384/638 (60%), Gaps = 30/638 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y + I++LKGL+ V+ RP MYIG T G++GL+HM+YE++DNAIDE + G+ D I Sbjct: 1 MVEKTYSGNDIKVLKGLEPVRLRPGMYIGST-GKTGLNHMVYEIIDNAIDEHVNGFCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTLN D S V DNGRGIP D+H E + E++MT LHAGGKF++K+YKVSGGLHGVG Sbjct: 60 RVTLNEDDSIEVEDNGRGIPVDIHPTENKNTLELVMTSLHAGGKFDKKAYKVSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS ++++++ R+G IY + G+ +++ G + +GT V FLP +IF Sbjct: 120 ASVVNALSEYMEVKVYRDGKIYYQKYARGVPQTDVIIVGET-DKSGTVVKFLPDKEIFDD 178 Query: 185 QDFNYD--TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 D + +++RL+E++FLN ++++ + + + GG+ F++Y+ + +K Sbjct: 179 GDITVESRLIENRLKEIAFLNPNLKVIF--EDRKRDYKQEFHFLGGLNEFINYILKRRKM 236 Query: 243 L-MQSPIRIQGSRDNISIDLAMR------WNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + P+ + GS ++ ++ + D V+ F NNI DGG H SG + A Sbjct: 237 NSISEPVYMYGSYQYSKVESEIQVEAAFVYTDSEESEVISFVNNIRTIDGGEHESGFKQA 296 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 LTR Y K K+ + G+D REG +++ IKMP+P F QTK +L S R Sbjct: 297 LTRLSNEYARKYNVLKEKDENFSGEDVREGLLAIIHIKMPNPVFEGQTKGRLGSKVAREA 356 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V + LS + + + EAK I +++ A R AA+RARD +RK + + +LPGKLA Sbjct: 357 VNQITTEKLSLYFDANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLPGKLA 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC+ RD +SELF+VEGDSAGG+AKQ R R QAILPLRGKILN E+ F K+L ++++ Sbjct: 417 DCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILPLRGKILNAEKTDFLKLLKNEQVS 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +I ALGTGIG++ F+++KLRY KIIIMTDADVDGAHIRTL+LT F + M SLI G++Y Sbjct: 477 NIIIALGTGIGEE-FNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRSLIEEGYVY 535 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL-------- 587 I +PPLY GK Y+ +E LE+ + G ++ + L Sbjct: 536 IAQPPLYRFEIGKQHFYLYSDEELEELKKKYGDKKWRIQRYKGLGEMNPDQLRETTMDRD 595 Query: 588 --------RNFIDDALKIDKLIKDFYPNHDKTFIEQAV 617 ++ A ++ +++ + P+ + FIE Sbjct: 596 TRKLVKIKMEDLEMAEEMIEILMGYDPSIRREFIESNA 633 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 99/294 (33%), Gaps = 11/294 (3%) Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 I T L+ +F I + + + + +D + N +L Sbjct: 358 NQITTEKLSLYF----DANIKEAKNIFERMFLAYKKRLAAKRARDSIKRKTIFENTTLPG 413 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEI 630 ++ S+ + + Y + + N E + Sbjct: 414 KLADCTSRDLNESELFIVEGDSAGGNAKQARDRMYQAILP------LRGKILNAEKTDFL 467 Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690 + +++N + + + ++ S ++ V + Sbjct: 468 KLLKNEQVSNIIIALGTGIGEEFNLSKLRYGKIIIMTDADVDGAHIRTLVLTLFHKYMRS 527 Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + + + L + G K +QRYKGLGEMN QL Sbjct: 528 LIEEGYVYIAQPPLYRFEIGKQHFYLYSDEELEELKKKYGDKKWRIQRYKGLGEMNPDQL 587 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 ETT++ DTR L+++K+ D A+++ LMG + RREFI+ N+ LDI Sbjct: 588 RETTMDRDTRKLVKIKMEDLEMAEEMIEILMGYDPSIRREFIESNANKVKELDI 641 >gi|300857422|ref|YP_003782405.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|300684876|gb|ADK27798.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41] gi|302205162|gb|ADL09504.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis C231] gi|302329720|gb|ADL19914.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis 1002] gi|308275403|gb|ADO25302.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis I19] Length = 681 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 271/625 (43%), Positives = 378/625 (60%), Gaps = 48/625 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y A SI IL+GL+AV+KRP MYIG T GE GLHH+++EV+DN++DE++ G+ Sbjct: 1 MA--TAEHEYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVWEVVDNSVDEAMAGH 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + VTL DG V DNGRGIP D+H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 58 ATHVDVTLLEDGGVEVVDNGRGIPVDMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IK G + +F N + D +V G TGT + F P ++ Sbjct: 117 HGVGISVVNALSTRVEADIKLHGKHWYQNFSNAVPDE--LVQGGNARGTGTTIRFWPDAE 174 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 IF F +D + RL+E++FLN + +SL DKR + Sbjct: 175 IFETTTFKFDIIARRLQEMAFLNKGLTLSLTDKRVSDEELELEAIADEGDTAENVSLEKI 234 Query: 222 ---------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISID 260 +Y G++ +V++L++ K+ + + + + D+ ++ Sbjct: 235 DSDADGNIEAPAAPKKREKKKVFYYPEGLKDYVAHLNKSKQVIHPTIVAFEAKGDDHEVE 294 Query: 261 LAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGD 320 +AM+WN+GY ++V F N I +GGTH G R+ALT + Y + K+ + ++ GD Sbjct: 295 VAMQWNNGYAQSVHTFANTINTIEGGTHEEGFRAALTTLMNRYAREHRLLKEKESNLTGD 354 Query: 321 DCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVK 380 DCREG ++V+S+++ DP+F QTK KL ++EV+ V+ VN+ ++ WL+ +P EAK I+ Sbjct: 355 DCREGLSAVISVRVGDPQFEGQTKTKLGNTEVKGFVQRMVNEHVADWLDANPAEAKTIIN 414 Query: 381 KVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAK 440 K + ++ R AAR+ARDL RRK D+ LPGKLADC +DP KSEL++VEGDSAGGSAK Sbjct: 415 KAVSSAHARMAARKARDLVRRKSATDLGGLPGKLADCRSKDPVKSELYVVEGDSAGGSAK 474 Query: 441 QGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKI 500 GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI D FDINKLRYHKI Sbjct: 475 AGRDSLYQAILPLRGKILNVEKARLDKVLKNAEVQAIITALGTGI-HDEFDINKLRYHKI 533 Query: 501 IIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESL 559 ++M DADVDG+HI TLLLT FR MP LI G +Y+ +PPLY + GK + + Sbjct: 534 VLMADADVDGSHIATLLLTLLFRFMPQLIEEGHVYLAQPPLYKLKWGKGDPGFAYSDAER 593 Query: 560 EDYLINQSLSEEIELFCDSKGVISK 584 + L D Sbjct: 594 DSLLEEGLAQGRKINKDDGIQRYKG 618 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 SLL+ + GRK I+ +QRYKGLGEMNAS+LWETTL+P+ R L RV I DA +AD++ Sbjct: 595 SLLEEGLAQGRK-INKDDGIQRYKGLGEMNASELWETTLDPEFRVLRRVDINDAQRADEI 653 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LDI Sbjct: 654 FSILMGDDVAARRSFITRRAKDVRFLDI 681 >gi|326383914|ref|ZP_08205598.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395] gi|326197373|gb|EGD54563.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395] Length = 684 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 272/615 (44%), Positives = 373/615 (60%), Gaps = 37/615 (6%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + S Y ADSI IL+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ GYA Sbjct: 12 SGKSKPSEYGADSISILEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMAGYA 70 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + VTL DG V D+GRG+P +H G+ A EVIMT+LHAGGKF+ SY VSGGLH Sbjct: 71 TRVDVTLLADGGIRVVDDGRGMPVGMHA-TGVPAVEVIMTQLHAGGKFDSDSYAVSGGLH 129 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG+SVVNALS+ + L IKR G+++ ++ N PL+ G A + TGT V+F I Sbjct: 130 GVGISVVNALSTKVDLEIKRNGSVWRQTYNNAEP-TPLLE-GEAASGTGTSVSFWADPKI 187 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP------------------------- 216 F ++N +T+ RL+E++FLN + I+L D+R Sbjct: 188 FETTEYNIETIARRLQEMAFLNKGLTITLTDERVHEAVLEAEVEESEDGDASIKTEEQKA 247 Query: 217 ----EPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 + + T Y G+ ++ + R K P+ ++ + + +++AM+WN+GY E Sbjct: 248 TAIAKVKTRTYHYPDGLIDYIKHLNSRSKAPIHKTVVGFTAKGEGHEVEIAMQWNEGYAE 307 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 +V F N I +GGTH G R+ALT + Y K+ + GDD REG +V+S Sbjct: 308 SVHTFANTINTAEGGTHEEGFRAALTSTVNRYAVDKKLIKEKDGKLSGDDIREGLAAVIS 367 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 +K+ DP+F QTK KL ++EV+S V+ N+ L+ W + +P EAK I+KK D+ R A Sbjct: 368 VKVADPQFEGQTKTKLGNTEVKSFVQKTCNEHLAMWFDANPAEAKTIIKKAADSQQARLA 427 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 ARRAR+L RRK DI LPGKLADC DP K E+++VEGDSAGGSAK GR QAIL Sbjct: 428 ARRARELVRRKTATDIGGLPGKLADCRSNDPSKCEVYIVEGDSAGGSAKSGRDSMYQAIL 487 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PLRGKI+NVE+AR D++L + E+ ++ITA GTGI D FDI KLRYHKI++M DADVDG Sbjct: 488 PLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDIAKLRYHKIVLMADADVDGQ 546 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLINQSLS 569 HI TLLLT FR M LI G +Y+ PPLY +G+ ++ ++ + L + Sbjct: 547 HIATLLLTLLFRFMRPLIEQGHVYLAMPPLYKLKWQKGQEPEFAYNDRERDALLEAGKAA 606 Query: 570 EEIELFCDSKGVISK 584 + D Sbjct: 607 GKKINTDDGIQRYKG 621 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 8/88 (9%) Query: 724 DTIFSIGR---KGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + G+ K I+ +QRYKGLGEMNAS+LWETT++PD R L +V + DA+ AD+L Sbjct: 597 DALLEAGKAAGKKINTDDGIQRYKGLGEMNASELWETTMDPDVRVLKQVTLDDAAAADEL 656 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++V RR FI N+ LD+ Sbjct: 657 FSILMGEDVVARRTFIARNAKDVRFLDV 684 >gi|168485800|ref|ZP_02710308.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1087-00] gi|169834087|ref|YP_001694306.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae Hungary19A-6] gi|73916366|gb|AAZ93051.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916388|gb|AAZ93062.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916404|gb|AAZ93070.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|168996589|gb|ACA37201.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae Hungary19A-6] gi|183570930|gb|EDT91458.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae CDC1087-00] Length = 647 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|209559109|ref|YP_002285581.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131] gi|209540310|gb|ACI60886.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131] Length = 650 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|73916426|gb|AAZ93081.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 391/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + YV K+ K+ +++ G D REG VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYVRKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|256847177|ref|ZP_05552623.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715841|gb|EEU30816.1| DNA topoisomerase IV, B subunit [Lactobacillus coleohominis 101-4-CHN] Length = 670 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 260/599 (43%), Positives = 366/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YD+ SI+ILKGL+AV+KRP MYIG TD GLHH++YE++DN++DE+L GY Sbjct: 1 MAKK--EYQYDSSSIKILKGLEAVRKRPGMYIGSTD-TYGLHHLVYEIVDNSVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D S TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIGADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS+ L L I R+ Y+ F + G L G + +GT V+F P Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHVRYQEKFKDGGQPVGTLKKLGKTKDSSGTTVSFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y+TL RLRE +FL ++I+L D+R + + T Y+ GI+ FV YL+ Sbjct: 177 PAIFSTTVYDYNTLARRLRESAFLLKGLRITLTDQRPGQEQSQTFQYENGIKDFVEYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + + G +D + +D+A ++NDGY ENVL F NN+ DGGTH +G RSA T+ Sbjct: 237 D-KDTLGKILTFTGKQDGVEVDVAAQYNDGYSENVLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K+ K +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V Sbjct: 296 SFNDYARKTNLLKDRDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 ++ V++ L+ L E+ A+++++K + A R+AAR+ARD +K +L GKL Sbjct: 356 DNIVSEQLNYALLENGDFAQMLIRKAVKARQAREAARKARDLSRNGKKRSRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ Sbjct: 416 TPAQSKNAQKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGVGSE-FNVADSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKV 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY + + + Y E L G ++ + L Sbjct: 535 YIALPPLYRLQQGRGAKNKITYAWTNEELTKLTKKMG-KTASLQRFKGLGEMNADQLWE 592 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 106/258 (41%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ L + S + ++ ++ Sbjct: 378 IRKAVKARQAREAARKARDLSRNGKKRSRKERNLSGKLTPAQSKNAQKNELFLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + ++ + +N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGVGSEFNVADSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + ++ + L G K KIT Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGRGAKNKITYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + K S+QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ Sbjct: 558 WTNEELTKLTKKMGKTASLQRFKGLGEMNADQLWETTMNPETRTLIRVQINDAQLAEKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I++N Sbjct: 618 TTLMGNKVEPRREWIEKN 635 >gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7] gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7] Length = 645 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 289/596 (48%), Positives = 406/596 (68%), Gaps = 10/596 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS+ I++ + YDA IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MSEEIKSKQDLANEYDASQIQVLEGLEAVRKRPGMYIGATSSE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+AD I +++ DGS V DNGRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFADEINLSIEKDGSIIVMDNGRGIPVDIQAKTGRPALETVFTILHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L + + + IY + G + + + V G + GT V F Sbjct: 120 VSGGLHGVGSSVVNALSTTLDVYVYKNSKIYHQQYAQGKVVHDVEVIGET-DKHGTTVHF 178 Query: 176 LPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 +P +IF +FN+D L R+REL+FLN ++I++ DKR + + Y+GGI+++V Sbjct: 179 VPDPEIFKETVEFNFDKLATRVRELAFLNKGLKITVEDKREDKQAFLEYHYEGGIKSYVE 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ +K L PI ++G + I+I++AM+ DGYH N++ F NNI +GGTH G ++ Sbjct: 239 FLNENKVVLYDEPIFLEGEQQGITIEVAMQHTDGYHNNLMSFANNIHTYEGGTHEFGFKT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T VLSIK PDP+F QTK KL +SE R+ Sbjct: 299 ALTRVINDYAKKNKIIKENEENLTGEDVREGLTIVLSIKHPDPQFEGQTKTKLGNSEART 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + + + +L E+P A+ IV+K L A+ R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITDRLFSAHFEKFLMENPPVARQIVEKGLLAARARLAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS +DP SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI Sbjct: 419 ADCSSKDPSISELFIVEGDSAGGSAKQGRSRLFQAILPIRGKILNVEKATLDRILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD++K RYHK++IMTDADVDGAHIRTLLLT F+R M ++ G++ Sbjct: 479 RSLFTAMGTGFGGD-FDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 YI +PPLY + +GK + Y+ E+ L +YL LS + G + L Sbjct: 538 YIAQPPLYQVRQGKKMVYLDSEDELNEYLKEIPLSPKPAIQRYKGLGEMDAEQLWE 593 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT+NP+ R +L+V + DA +AD LMGD VEPRR FI+EN Sbjct: 577 IQRYKGLGEMDAEQLWETTMNPENRRMLQVTVDDAIEADKSCDMLMGDRVEPRRIFIEEN 636 Query: 796 SLPS-ALDI 803 + LDI Sbjct: 637 ARYVQNLDI 645 >gi|15674782|ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogenes M1 GAS] gi|71910366|ref|YP_281916.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005] gi|73919732|sp|Q9A0L0|GYRB_STRP1 RecName: Full=DNA gyrase subunit B gi|13621909|gb|AAK33677.1| putative DNA gyrase, subunit B [Streptococcus pyogenes M1 GAS] gi|71853148|gb|AAZ51171.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005] Length = 650 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|116511808|ref|YP_809024.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris SK11] gi|116107462|gb|ABJ72602.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris SK11] Length = 644 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 266/595 (44%), Positives = 377/595 (63%), Gaps = 16/595 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + ITVT Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNKITVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +V D GRG+P H GI EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 65 INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALS+WL++ I R+G +Y F N G L G A TGT+VTF+P S IFS Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ + RL E +FL V ISL DKR+ E Y+ G++ FV+YL+ K L Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLTP 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G +D +++A+++NDGY EN+L F NN+ KDGGTH +GL++A+T+ + Y Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K +++ G D REG T+VLS+ +P+ +F QTK+KL S R VV+S V++ Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 LS +L E+ A+ +++K + A R+AAR+AR+ +K D L GKL ++ Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I + Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 481 GAGVGAD-FTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y ++ + + ++Y + L + + ++ + + + +D Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +KI+ L + K ++QRYKGLGEMNA QLWETT++P+TR+L++V I D Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607 Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795 A+QA+ S LMGD+VEPRR++I+ N Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633 >gi|259503381|ref|ZP_05746283.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM 16041] gi|259168677|gb|EEW53172.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus antri DSM 16041] Length = 663 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 273/657 (41%), Positives = 386/657 (58%), Gaps = 28/657 (4%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YD SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY D Sbjct: 7 TTKKVKYDESSIQVLKGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALSGYGDE 65 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHG 122 I VT+ D S TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGGLHG Sbjct: 66 INVTIEADNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQADGYKTSGGLHG 124 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALS+ L L I R+ Y+ F N G L G D+GT VTF P I Sbjct: 125 VGASVVNALSTNLTLTIVRDHVRYQEKFKNGGQPVGTLKKLGKTRVDSGTTVTFKPDPAI 184 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ ++Y+TL +RLRE +FL ++I L DKR + +E + GI+ FVSYL+ K Sbjct: 185 FTTTTYDYNTLANRLRESAFLLKGIKIVLADKRPGQEQENVFQFDDGIQEFVSYLNEGKD 244 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L ++ G + +++A ++NDGY E +L F NN+ DGGTH +G RSA T+ Sbjct: 245 TLGKTL-YFDGKDQGVEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHEAGFRSAWTKTFN 303 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y ++ K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V++ Sbjct: 304 EYAKRVGLLKANDKNLEGSDVREGLTAVVSVRIPERLLQFEGQTKDKLGTPEARKIVDTV 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADC 417 V++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 364 VSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPA 423 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ++ +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+ Sbjct: 424 QSKNAQKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTI 483 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I +G G G + FD++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G +YI Sbjct: 484 IYTVGAGAGSE-FDVDDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIA 542 Query: 538 KPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN---- 589 PPLY + + + Y E L L + G ++ + L Sbjct: 543 LPPLYRLQQGKGAKTKITYAWTNEELTK-LTKRMGKTAQLQRFKGLGEMNADQLWETTMN 601 Query: 590 ---------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 I+DA ++ + N + E + F DQE + +ASK Sbjct: 602 PETRTLIRVRIEDAELAERRVTTLMGNKVEPRREWIEENVQFTLSDDQESDELVASK 658 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNAQKNELFLVEGDSAG 442 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + + +N Sbjct: 443 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFDVDDSNY 502 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + ++ + L G K KIT Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKVYIALPPLYRLQQGKGAKTKITYA 562 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + K +QR+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ Sbjct: 563 WTNEELTKLTKRMGKTAQLQRFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAERRV 622 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 623 TTLMGNKVEPRREWIEEN 640 >gi|73916468|gb|AAZ93102.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 277/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E E+ + G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIELHY--ENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 379 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 438 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 439 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 498 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 499 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 558 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 559 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 618 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 619 NVLMGDKVEPRRKWIEDN 636 >gi|75288399|sp|Q5YLB4|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] Length = 731 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 268/597 (44%), Positives = 374/597 (62%), Gaps = 12/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N ++ Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNA+DE+ G+A Sbjct: 83 ENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGST-GPRGLHHLVYEILDNAVDEAQAGFAT 141 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 I V L+ D S +++DNGRGIPT+LH S+ E ++T LHAGGKF S Y VSGGL Sbjct: 142 KIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTVLHAGGKFGGSSSGYNVSGGL 201 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG---SAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ I R+G Y+ + G L+ + GT + F P Sbjct: 202 HGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLICHDLPVEMRDRQGTAIRFWP 261 Query: 178 SSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVS 234 ++F+ + F+Y+T+ R+REL+FLN + I+L + + + FY GG+ +V Sbjct: 262 DKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDIDPEKIQCNEYFYAGGLVEYVK 321 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKPL + D I+ID+A++W D Y + +L + N+I DGGTH+ G++ Sbjct: 322 WLNADKKPLHDVLG-FRKEADGITIDMALQWCSDAYSDTMLGYANSIRTIDGGTHIDGVK 380 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + + +KS K+ S+ G+ REG T V+S+K+P+P F QTK +L + EVR Sbjct: 381 AALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVR 440 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VV+ V + L+ +LE HP I+ K L+A AA+RAR+L R+K VL +SLPGK Sbjct: 441 KVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGK 500 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS +P+++E+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M ++E Sbjct: 501 LADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEE 560 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I LI LG G+ + F LRYHKIII+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 561 IQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGC 620 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK + Y D+ L+ + + G + L Sbjct: 621 IYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNASYNIQRFKGLGEMMPAQLWE 677 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 124/331 (37%), Gaps = 32/331 (9%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562 D + G H+R L ++P+ G P + + +Y+ + L Sbjct: 401 DISLSGEHVREGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPD 460 Query: 563 LINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKTFIEQAV 617 +++ LS+ + + +L + + + + + D P + FI + Sbjct: 461 VLDSILSKSLNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGD 520 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL----------VKRI 667 +G + ++ LN + + + IL K+ Sbjct: 521 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKE 580 Query: 668 ARGVQEQFVLEGS---------SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKI 716 A + +L + + +F +Y+R I + + Sbjct: 581 ALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYC 640 Query: 717 TGPCSLLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L S ++QR+KGLGEM +QLWETT+NP+TR L ++ + DA++A+ Sbjct: 641 YDDAELKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANV 700 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA---LDI 803 +FS LMG V+ R++ IQ ++ LDI Sbjct: 701 VFSSLMGSRVDIRKQLIQNSASMMNLEQLDI 731 >gi|94994032|ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750] gi|94547540|gb|ABF37586.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750] Length = 650 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 275/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y+ L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|281491482|ref|YP_003353462.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis KF147] gi|281375200|gb|ADA64713.1| Topoisomerase IV, subunit B [Lactococcus lactis subsp. lactis KF147] Length = 644 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 267/595 (44%), Positives = 378/595 (63%), Gaps = 16/595 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I+VT Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +V D GRG+P H GI EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 65 INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALS+WL++ I R+G +Y F N G L G A TGT+VTF+P S IFS Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ + RL E +FL V ISL DKR+ E Y+ G++ FVSYL+ K L Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G +D +++A+++NDGY EN+L F NN+ KDGGTH +GL++A+T+ + Y Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K+ +++ G D REG T+VLS+ +P+ +F QTK+KL S R VV+S V++ Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 LS +L E+ A+ +++K + A R+AAR+AR+ +K D L GKL ++ Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I + Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y ++ + + ++Y + L + + ++ + + + +D Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +KI+ L + K ++QRYKGLGEMNA QLWETT++P+TR+L++V I D Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607 Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795 A+QA+ S LMGD+VEPRR++I+ N Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633 >gi|70704907|gb|AAZ06865.1| DNA gyrase subunit B [Acholeplasma vituli] Length = 538 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 267/537 (49%), Positives = 365/537 (67%), Gaps = 4/537 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 GE GLHH+++E++DN+IDES+ GYA I++ + V+D+GRGIP D+H + SA Sbjct: 3 GERGLHHLVWEIVDNSIDESMVGYASEISLEIQKGNIIRVTDDGRGIPVDIHAKTKKSAV 62 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I+R G +Y+ + GI Sbjct: 63 ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTIRRNGLLYQQEYKKGIPQ 122 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS 215 L V G + + TGTE+ F ++F ++++TL++R++EL+FLN ++IS+ D+R Sbjct: 123 YDLKVIGESTH-TGTEIEFQADPEVFTETTTYDFETLRNRIQELAFLNRHIKISIEDQRG 181 Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 P Y+GGI+ +V++L+ +K + + Q DNI+++LA+++ND Y NV Sbjct: 182 ETPVRFEYQYEGGIQEYVTFLNGNKGIVHPEIVYAQKEVDNITVELALQYNDSYATNVFS 241 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 FTNNI +GG H G + ALTR I +Y + + K S IG+D REG T+++S+K P Sbjct: 242 FTNNIHTHEGGMHEDGFKLALTRVIGNYAKDNNILK-KDESFIGEDTREGLTAIISVKHP 300 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL + EVR +V + L +L E+P AK I+ KVL AS R AAR+A Sbjct: 301 NPQFEGQTKTKLGNPEVRQIVSQITGEALERFLLENPTAAKSIMDKVLMASRARIAARKA 360 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 ++ TRRK LD+ KLADC R P++SE+++VEGDSAGGSAKQGR QAILPLRG Sbjct: 361 KEATRRKSPLDMLGFASKLADCRNRKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 420 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 K+LNVE+AR DK LS++EI ++I A GTGIG+D FDI K RYHKI+IMTDADVDGAHIRT Sbjct: 421 KVLNVEKARLDKALSNKEILSMIQAFGTGIGED-FDITKARYHKIVIMTDADVDGAHIRT 479 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 L+LTF FR M LI G++Y+ +PPLY + GK ++YV DEE L L I Sbjct: 480 LMLTFLFRYMKPLIDFGYVYVAQPPLYKVQSGKRIEYVYDEERLRVVLEQMGGRPAI 536 >gi|125624342|ref|YP_001032825.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|124493150|emb|CAL98114.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris MG1363] gi|300071126|gb|ADJ60526.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris NZ9000] Length = 644 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 266/595 (44%), Positives = 377/595 (63%), Gaps = 16/595 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + ITVT Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNKITVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +V D GRG+P H GI EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 65 INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALS+WL++ I R+G +Y F N G L G A TGT+VTF+P S IFS Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLEKIGKAPKSKTGTKVTFMPDSTIFSTT 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ + RL E +FL V ISL DKR+ E Y+ G++ FV+YL+ K L Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVAYLNEDKDSLTP 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G +D +++A+++NDGY EN+L F NN+ KDGGTH +GL++A+T+ + Y Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K +++ G D REG T+VLS+ +P+ +F QTK+KL S R VV+S V++ Sbjct: 301 KVNLLKDKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 LS +L E+ A+ +++K + A R+AAR+AR+ +K D L GKL ++ Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I + Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 481 GAGVGAD-FTLADRNYDKVIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y ++ + + ++Y + L + + ++ + + + +D Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 59/86 (68%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +KI+ L + K ++QRYKGLGEMNA QLWETT++P+TR+L++V I D Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607 Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795 +QA+ S LMGD+VEPRR++I+ N Sbjct: 608 VAQAEKRVSVLMGDKVEPRRKWIENN 633 >gi|325978151|ref|YP_004287867.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178079|emb|CBZ48123.1| topoisomerase IV subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 649 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 269/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MAKKEINVNNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I V +N D S TVSD GRG+PT H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGNQIDVIINSDDSVTVSDQGRGMPTGKHA-MGIPTVEVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A +GT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKSGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V ++L D R E + Y+ G++ FV YL+ Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKDVTLTLTDNRPEEAEHLEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I + G N +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 239 EDKETLTP-VISVTGEDQNFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y KS K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKSGLLKEKDKNLEGSDYREGLSAVLSILVPEEHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSEKLTYFLLENGEIASNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN +A+ ++ ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G + F++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIYTIGAGVGAE-FNVENSNYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + ++Y + LE+ +++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKKEQVEYAWTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 597 TMNPETRTLIRVTIEDLARAERR 619 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I ++ +N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTAKAKMSDIVKNEEINTMIYTIGAGVGAEFNVENSNY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKKEQVEYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEELRQKFGKGAQLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 621 NVLMGDKVEPRRKWIEDN 638 >gi|19745824|ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS8232] gi|50913919|ref|YP_059891.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394] gi|73919730|sp|Q5XD05|GYRB_STRP6 RecName: Full=DNA gyrase subunit B gi|73919731|sp|Q8P1M4|GYRB_STRP8 RecName: Full=DNA gyrase subunit B gi|19747970|gb|AAL97459.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS8232] gi|50902993|gb|AAT86708.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394] Length = 650 Score = 556 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 274/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L + + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|139474074|ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo] gi|134272321|emb|CAM30575.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo] Length = 650 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 274/617 (44%), Positives = 394/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L + + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK ++ + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPIVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR +QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPIVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|328949784|ref|YP_004367119.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884] gi|328450108|gb|AEB11009.1| DNA gyrase, B subunit [Marinithermus hydrothermalis DSM 14884] Length = 637 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 281/639 (43%), Positives = 392/639 (61%), Gaps = 25/639 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S+YDA SI++LKGL+ V+KRP+MYI T G G H ++ E+LDNA+DE+L GYA+ I VT Sbjct: 2 STYDASSIKVLKGLEGVRKRPAMYIAGT-GTDGYHQLLSEILDNAVDEALAGYANEIKVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS +V DNGRGIP + EG A EVI T LHAGGKF + +YKVSGGLHGVG SV Sbjct: 61 LHADGSASVEDNGRGIPVGIMPGEGRPAVEVIYTELHAGGKFEEGAYKVSGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV-Q 185 VNALS+W + + R+G Y + F G + PL G A + TGT V FLP + IF Sbjct: 121 VNALSAWTVVEVFRDGKHYRIQFSRGRVVEPLTELGPAPKHKTGTRVHFLPDATIFEPGL 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F++ ++ R+RE+SFL ++I L D+R + KGG+ +F L ++ L Sbjct: 181 EFDFRRVRRRVREVSFLAGGLKIILKDERKGKE--EVFHDKGGVASFAKALAEGEELLYD 238 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 P+R+ G +++ +D+ + GY +L + N IP +DGG HLSG R+A TR + Y + Sbjct: 239 KPVRLHGQVEDVEVDVGLIHTKGYTTELLTYANMIPTRDGGVHLSGFRTAYTRALNKYAQ 298 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 ++ K + + G+D EG +V+S+K+P P+F QTK KL++ E +S V V D L Sbjct: 299 RAGLVKNGQPTPSGEDLLEGLFAVISVKIPQPQFEGQTKGKLLNPEAQSAVTKVVYDQLM 358 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 LE +P AK+I +K L A+ R+AAR+AR+L RR+ L+ LPGKLADC +P ++ Sbjct: 359 EHLERNPRVAKLIYEKALRAAQAREAARKARELVRRQNPLESDDLPGKLADCQTENPDEA 418 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAKQGR R QAILPLRGKILNVE+A K L + EI ++ A+G GI Sbjct: 419 ELFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKANLQKALKNNEIRAMVAAIGAGI 478 Query: 486 GQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 FD+ +RYHKII+MTDADVDG+HIRTLLLTFF+R M +I G+LYI +PPL Sbjct: 479 DGTGQDGHFDLESVRYHKIILMTDADVDGSHIRTLLLTFFYRYMRPVIEAGYLYIAQPPL 538 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN------------ 589 Y + G+ ++YV D+E+L L G ++ L Sbjct: 539 YRLKVGRKIEYVYDDETLRKKLAALEGKPYEIQRFKGLGEMNPEQLWETTMNPETRVLRQ 598 Query: 590 -FIDDALKIDKLIKDFYPNH---DKTFIEQAVISGVFNC 624 I+DAL+ +++ + + + FIE+ + Sbjct: 599 VTIEDALEANEIFERLMGSEVAPRREFIEENARFAELDV 637 Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 71/133 (53%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L + +L + ++ Sbjct: 505 VDGSHIRTLLLTFFYRYMRPVIEAGYLYIAQPPLYRLKVGRKIEYVYDDETLRKKLAALE 564 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 K +QR+KGLGEMN QLWETT+NP+TR L +V I DA +A+++F RLMG EV PRRE Sbjct: 565 GKPYEIQRFKGLGEMNPEQLWETTMNPETRVLRQVTIEDALEANEIFERLMGSEVAPRRE 624 Query: 791 FIQENSLPSALDI 803 FI+EN+ + LD+ Sbjct: 625 FIEENARFAELDV 637 >gi|311741695|ref|ZP_07715517.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium pseudogenitalium ATCC 33035] gi|311303216|gb|EFQ79297.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium pseudogenitalium ATCC 33035] Length = 689 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 273/695 (39%), Positives = 389/695 (55%), Gaps = 58/695 (8%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+E++DN++DE++ GY Sbjct: 1 MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD +TV L DG V DNGRGIP ++H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 57 ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I D + G TGT++ F + Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPE 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 +F +++YDT+ RL+E++FLN + I LID+R E + Sbjct: 174 VFETTEYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSF 233 Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251 T Y G+ +V YL++ K + + + Sbjct: 234 DDAPDAGDTFNEESGEAKDAAADKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFD 293 Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311 ++ +++A++WN GY ++V F N I +GGTH G R+ALT + Y ++ K Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLK 353 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 + ++ GDDCREG +V+S+K+ DP+F QTK KL +SE++ V+ VN+ ++ W + + Sbjct: 354 EKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDAN 413 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P EAK I+ K + ++ R AAR+AR++ RRK D+ LPGKLADC +DPK SEL++VE Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVE 473 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI ++ FD Sbjct: 474 GDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550 I KLRY KI++M DADVDG HI TLLLT FR MP L+ +G +++ PPLY + K Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTP 592 Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 Y + + L D N + D Sbjct: 593 GYAFSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDL 652 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++A D S ++ A + F+ Sbjct: 653 EDAQRADELFSILMGDDVSARRSFITRRAKDVRFL 687 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 8/88 (9%) Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G + I+ +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+L Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDLEDAQRADEL 661 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LDI Sbjct: 662 FSILMGDDVSARRSFITRRAKDVRFLDI 689 >gi|37522075|ref|NP_925452.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421] gi|35213074|dbj|BAC90447.1| DNA gyrase subunit B [Gloeobacter violaceus PCC 7421] Length = 644 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 283/596 (47%), Positives = 384/596 (64%), Gaps = 13/596 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YE++DN++DE+L G+ Sbjct: 1 MTE-----TYGAEQIQVLEGLEHVRKRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGH 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I ++L DGS T++D+GRGIPTD H G S E ++T L AGGKF YKVSGGL Sbjct: 55 CKHIAISLGADGSATITDDGRGIPTDTHPRTGKSTIETVLTVLGAGGKFGGGGYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG +VVNALS+ L I REG Y F GI + L V+ + GT ++FLP + Sbjct: 115 HGVGAAVVNALSTILTATIWREGKQYIQRFHRGIPEGGLAVSSDSQKRRGTMISFLPDPE 174 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ DF++DTL R REL+FLN+ V+ D R R + Y+GGI +V Y+ R Sbjct: 175 IFTTGVDFDFDTLLSRFRELAFLNAGVEFRFSDLRGETERTESYIYEGGIREYVKYMTRE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L I I RD +S++ A++W D Y++NVL F NNI DGGTHL GL++ LTR Sbjct: 235 KAALHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 S+ K+ K +++ G+ REG T+VLS+K+P+P F QTK KL + EVR +V+ Sbjct: 295 TFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDG 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 +++ L+ +LE HP I++K L + +AAR+ARDL RRK L+ ++LPGKLADC Sbjct: 355 VISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 RDP +SE+FLVEGDSAGGSAKQGR R QAILPLRGKILN+ERA K+ + EI +I Sbjct: 415 SRDPAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 T LG G+ + FD+ +LRYH+IIIMTDADVDGAHIRTLLLTFF+R L+ G++YI + Sbjct: 475 TGLGLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQ 534 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY I+ R ++Y E+ E L +++ G + + L Sbjct: 535 PPLYKISIGGGRNIDVRYCYSEQEKEAILRGLRENQKYELQRFKGLGEMQADQLWE 590 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 74/339 (21%), Positives = 126/339 (37%), Gaps = 44/339 (12%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLY--IIKPPLYGITRGKSLQYVKDEESLEDY 562 D ++ G H+R L ++P+ G + P + GI G + + + Sbjct: 310 DKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVDGVISEKLTEYLEFHPD 369 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID-----KLIKDFYPNHDKTFIEQAV 617 ++ L + ++ + DL + P + F+ + Sbjct: 370 VVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADCQSRDPAESEVFLVEGD 429 Query: 618 ISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW-----------------HGSINNS 660 +G + ++ LN K + + Sbjct: 430 SAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAMITGLGLGLKTEEFDVG 489 Query: 661 DILVKRIARGVQEQFVLEGSSIFS----FGSKYKRIFSNRIEENYLTILSL---ICNGDK 713 + RI + ++G+ I + F +YKR + I G Sbjct: 490 RLRYHRII--IMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIAQPPLYKISIGGGRN 547 Query: 714 IKITGP------CSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 I + ++L + + +QR+KGLGEM A QLWETT+NP+TR+L +V I Sbjct: 548 IDVRYCYSEQEKEAILRGLRENQK--YELQRFKGLGEMQADQLWETTMNPETRTLRQVTI 605 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENSLP---SALDI 803 DA++AD +F+ LMGD VEPRREFI+ + LDI Sbjct: 606 EDAAEADRVFNILMGDRVEPRREFIETYGPRLQMADLDI 644 >gi|332522400|ref|ZP_08398652.1| DNA topoisomerase IV, B subunit [Streptococcus porcinus str. Jelinkova 176] gi|332313664|gb|EGJ26649.1| DNA topoisomerase IV, B subunit [Streptococcus porcinus str. Jelinkova 176] Length = 649 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 273/623 (43%), Positives = 392/623 (62%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VT+N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIKVTINADGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS WL++ I R+G++Y+ F N G + L SA TGT VTF+P Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTTVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V++SL D R E Y+ G++ FVSYL+ Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVKMSLTDLRGEEAVTEEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +A+++NDG+ +N+L F NN+ KDGG+H +GL++A+T Sbjct: 239 EDKETLTP-VIYVEGEDQEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KVMNDYARKTNLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F I ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FSIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 534 LYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++GK + Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKTAKVAYAWTDRELEDLRKEFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 +D + I I D + Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 99/261 (37%), Gaps = 12/261 (4%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEEINTMVYTIGAGVGADFSIEEINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717 D ++ + + + +F +Y R G K+ Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKTAKVA 558 Query: 718 ---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 YAWTDRE-LEDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAE 617 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 618 RRVSVLMGDKAAPRRQWIEDN 638 >gi|69251026|ref|ZP_00605191.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO] gi|68193894|gb|EAN08477.1| Gram positive topoisomerase IV, subunit B [Enterococcus faecium DO] Length = 665 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 17/648 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 ++GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I VT++ D S TV+ Sbjct: 1 MEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVA 59 Query: 78 DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137 D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL + Sbjct: 60 DSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLIV 118 Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 I R+G Y+ F N G D L G GT V FLP IFS F+Y+ L RL Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTTVHFLPDDTIFSTTKFSYEILAERL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 RE +FL V+ISL D R EP + Y+ GI+ FV YL+ K L + G ++ Sbjct: 179 RESAFLLKGVKISLSDLRGEEPVKEIFHYEEGIKEFVDYLNEEKDTLTP-VVYFSGEKEG 237 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Y K K+ ++ Sbjct: 238 IEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKN 297 Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 + G D REG +VLSI++P+ +F QTKEKL + R+VV++ +++ + +L+E+ Sbjct: 298 LEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEM 357 Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432 ++++V+K + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEG Sbjct: 358 SQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEG 417 Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 DSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Sbjct: 418 DSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSI 476 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552 Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G+ + Sbjct: 477 EDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQ 536 Query: 553 VKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 V + +D +I + + G ++ L +D + Sbjct: 537 VIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-----TMDPTSRTLIRVRI 591 Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + + + + + + L +K I Sbjct: 592 DDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTEI 639 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 362 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 421 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 422 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 481 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 482 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 541 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 542 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 600 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 601 VTTLMGDKVEPRRKWIENH 619 >gi|255324004|ref|ZP_05365129.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141] gi|255298861|gb|EET78153.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141] Length = 689 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 273/695 (39%), Positives = 389/695 (55%), Gaps = 58/695 (8%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+E++DN++DE++ GY Sbjct: 1 MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD +TV L DG V DNGRGIP ++H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 57 ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I D + G TGT++ F + Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFQNAIPDELVE--GGNARGTGTKIRFWADPE 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 +F +++YDT+ RL+E++FLN + I LID+R E + Sbjct: 174 VFETTEYDYDTIARRLQEMAFLNKGLSIELIDERVTEEQIELEEIADAESGETSADETSF 233 Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251 T Y G+ +V YL++ K + + + Sbjct: 234 DDAPDAGDTFNEESGEAEDAAAEKKRRKKVTFHYPDGLTDYVKYLNKSKTAIHPTIVSFD 293 Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311 ++ +++A++WN GY ++V F N I +GGTH G R+ALT + Y ++ K Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLLK 353 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 + ++ GDDCREG +V+S+K+ DP+F QTK KL +SE++ V+ VN+ ++ W + + Sbjct: 354 EKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDAN 413 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P EAK I+ K + ++ R AAR+AR++ RRK D+ LPGKLADC +DPK SEL++VE Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVE 473 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI ++ FD Sbjct: 474 GDSAGGSAKGGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550 I KLRY KI++M DADVDG HI TLLLT FR MP L+ +G +++ PPLY + K Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVFLANPPLYKLKWSKGTP 592 Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 Y + + L D N + D Sbjct: 593 GYAFSDAERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDL 652 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++A D S ++ A + F+ Sbjct: 653 EDAQRADELFSILMGDDVSARRSFITRRAKDVRFL 687 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 8/88 (9%) Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G + I+ +QRYKGLGEMNA++LWETTL+P TR L RV + DA +AD+L Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNAAELWETTLDPSTRILRRVDLEDAQRADEL 661 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LDI Sbjct: 662 FSILMGDDVSARRSFITRRAKDVRFLDI 689 >gi|306827658|ref|ZP_07460937.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus pyogenes ATCC 10782] gi|304430139|gb|EFM33169.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus pyogenes ATCC 10782] Length = 650 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 273/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L + + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEII-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++A+++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAVQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 635 RRDFIEENAVYSTLDI 650 >gi|297584211|ref|YP_003699991.1| DNA topoisomerase IV subunit B [Bacillus selenitireducens MLS10] gi|297142668|gb|ADH99425.1| DNA topoisomerase IV, B subunit [Bacillus selenitireducens MLS10] Length = 656 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 269/659 (40%), Positives = 384/659 (58%), Gaps = 20/659 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N + +Y+ D+IQ+L+GLDAV+KRP MYIG TD GLHH+++E++DN++DE L G+ + Sbjct: 2 NKNDFAYNDDAIQVLEGLDAVRKRPGMYIGSTD-HRGLHHLVFEIVDNSVDEILAGFGNE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 ITVT++ D S ++ D+GRG PT +H G EVI+T LHAGGKF Q YK SGGLHGV Sbjct: 61 ITVTIHKDQSVSIQDSGRGFPTGMH-RSGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL++ I R+G I + F N G L G TGT V F P IF Sbjct: 120 GASVVNALSEWLEVTIYRDGVISQQRFENGGKPATTLEKVGKTK-RTGTTVHFKPDEAIF 178 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL V+I LID+R EP T + G+ AFV YL+ K Sbjct: 179 GSITFHYDTLAERLREAAFLIKGVKIELIDERGDEPERDTFQFDTGLVAFVDYLNEEKDI 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G D I +D+A ++NDG+ EN+L F NN+ KDGGTH G ++A+TR I Sbjct: 239 LHPVIQ-FEGVHDEIEVDIAFQYNDGFTENMLSFVNNVRTKDGGTHELGAKAAITRIINE 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K+ +++ G D REGFT ++S+++P+ +F QTK KL ++E RS V+ + Sbjct: 298 HARKLALLKEKDKNLDGSDIREGFTGIISVRVPEEKLQFEGQTKAKLGTAEARSAVDQVI 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 + L+ +LEE+P + +++KK + AS R+AAR+AR+ +K A L GKL Sbjct: 358 SGKLAFFLEENPEFSHMLIKKAVKASQAREAARKAREDARNGKKNKRKDAMLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ ++ ++EI T+I Sbjct: 418 SRNPNKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIMKNEEIRTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 A+G +G FD+ + Y KI+IMTDAD DGAHI+ LLLTFF+R M L+ G +YI Sbjct: 478 YAIGGDVG-PDFDLENINYDKIVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGRIYIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 PPLY ++ + + ++Y DE L+ + I G + L Sbjct: 537 PPLYKVSRGSGKKEIVEYAWDENGLQGAIDQVGKGY-ILQRYKGLGEMDATQLWET---- 591 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 ++ + + + + + +A LN + Sbjct: 592 -TMNPESRTLVRVTIEDVARAERHVSTLMGDKVEPRRKWIERNVAFGLNEDTNILDNDH 649 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 11/182 (6%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 456 VINTEKAKLADIMKNEEIRTIIYAIGGDVGPDFDLENINYDKIVIMTDADTDGAHIQVLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI-------TGPCSLLDTIFSIGRKG 733 F + + + RI + + K +I G +D + KG Sbjct: 516 LTFFYRYMRPLVEAGRIYIALPPLYKVSRGSGKKEIVEYAWDENGLQGAIDQV----GKG 571 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +QRYKGLGEM+A+QLWETT+NP++R+L+RV I D ++A+ S LMGD+VEPRR++I+ Sbjct: 572 YILQRYKGLGEMDATQLWETTMNPESRTLVRVTIEDVARAERHVSTLMGDKVEPRRKWIE 631 Query: 794 EN 795 N Sbjct: 632 RN 633 >gi|257076794|ref|ZP_05571155.1| DNA gyrase subunit B [Ferroplasma acidarmanus fer1] Length = 677 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 268/651 (41%), Positives = 379/651 (58%), Gaps = 19/651 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + +YDA IQIL+GL AV+K P MYIG T G GLHHM+YEV+DN IDE++ G+ Sbjct: 30 SMDKAMDNYDASQIQILEGLKAVRKVPGMYIGST-GPDGLHHMVYEVVDNCIDEAMAGFG 88 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I + + DGS +V D+GRGIP D+H + E++MT LH+G KF++K YKV+GGLH Sbjct: 89 SDINIVIYKDGSISVEDDGRGIPVDIHPKYKRPGLEIVMTELHSGAKFDKKVYKVTGGLH 148 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGN--- 167 GVGV VVNALS +L +K+ IY F G+ + L V G Sbjct: 149 GVGVHVVNALSDYLVAVVKKGTKIYYEKFQQGVPVSGLQVLDAKNKSADPEIGDIEMKYP 208 Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 + GT + F P + IF DF+Y + R+ +L+FLN ++ I L D RS + + G Sbjct: 209 EHGTIIKFYPDATIFDTIDFSYPVISQRIMDLAFLNPNITIELSDLRSGK--HEKFHFDG 266 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 G+ +V +LD+ K + + PI + ++ A+++ D F NNI +GGT Sbjct: 267 GLVEYVQFLDQGKDIVNKEPIYCREEYKEYVVEFALQYIDNVTGTEESFVNNIKTPEGGT 326 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H++G + L+R + Y K+ K +IGDD REG T+VL +KM +P+F QTKEKL Sbjct: 327 HITGFHTGLSRAVLEYA-KAKNLVKGVSGLIGDDTREGLTAVLHVKMFNPQFEGQTKEKL 385 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 +S V+S+V S L + E +P A I+K+VL A++ R+A+R+A+DL RRK L+ Sbjct: 386 GNSVVKSIVSSITEKYLKDYFESYPPIADAIIKRVLAAAIAREASRKAKDLVRRKTALES 445 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 +LPGKLADCS D ++E+++VEGDSAGGSAKQ R+RE QAILPLRGKILNVE++ +K Sbjct: 446 GTLPGKLADCSSSDSDQTEVYIVEGDSAGGSAKQARNREYQAILPLRGKILNVEKSNDNK 505 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 L ++EI LITA+GT I +D F+I LRY KIIIMTDADVDGAHIRTLLLTFF+R M Sbjct: 506 ALENEEIKNLITAIGTNI-KDKFEIKNLRYGKIIIMTDADVDGAHIRTLLLTFFYRFMNE 564 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI G +Y +PPL+ + +G + YV E+ + + + I+ F + + Sbjct: 565 LIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMGKNVVIQRFKGLGEMNPEQLW 624 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 ++ + + + + V E N L Sbjct: 625 ETTMNPESRKLVQVSIEDALYADQLFNILMGEKVEPRRKFIEDNAKYVQNL 675 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 2/184 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ N + I + + ++ V + Sbjct: 495 ILNVEKSNDNKALENEEIKNLITAIGTNIKDKFEIKNLRYGKIIIMTDADVDGAHIRTLL 554 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + + I I + + D + + + +G K + +QR+K Sbjct: 555 LTFFYRFMNELIQGGHIYFAQPPLFRVQKGNDIVYVFSEDEKDREVAKMG-KNVVIQRFK 613 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLWETT+NP++R L++V I DA AD LF+ LMG++VEPRR+FI++N+ Sbjct: 614 GLGEMNPEQLWETTMNPESRKLVQVSIEDALYADQLFNILMGEKVEPRRKFIEDNAKYVQ 673 Query: 800 ALDI 803 LDI Sbjct: 674 NLDI 677 >gi|194398307|ref|YP_002037488.1| DNA topoisomerase IV subunit B [Streptococcus pneumoniae G54] gi|194357974|gb|ACF56422.1| DNA topoisomerase IV, B subunit [Streptococcus pneumoniae G54] Length = 647 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 278/623 (44%), Positives = 392/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVMTLKKVGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|313904177|ref|ZP_07837556.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6] gi|313470979|gb|EFR66302.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6] Length = 646 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 246/627 (39%), Positives = 356/627 (56%), Gaps = 24/627 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + SYDA SIQ+L+GL+AV+ RP MYIG T G GL+H+IYE++DN++DE L GY I Sbjct: 3 KKDSYDASSIQVLEGLEAVRMRPGMYIGST-GRKGLNHLIYEIVDNSVDEHLAGYCTKIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V L DGSCTV+D+GRGIP ++H++ G+ A V++T LHAGGKF+ +YK SGGLHGVG Sbjct: 62 VVLEADGSCTVTDDGRGIPVNMHEK-GMPAERVVLTTLHAGGKFDNDAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV------VTGSAGNDTGTEVTFLPSS 179 SVVNALS ++ ++I R+G I+ F G+ L G +TGT++ F+P Sbjct: 121 SVVNALSVFMDVQISRDGYIHHDRFEKGVPVMELAEDGLLPKIGKTK-NTGTKINFMPDG 179 Query: 180 DIFSVQD---FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI-TMFYKGGIEAFVSY 235 +IF + F+ D L+ RL E +LN ++ I +D R + E T GI FV Sbjct: 180 EIFETYEKSGFSADDLKSRLHETCYLNPNLVIEFVDLRPGKNNEEVTYSEPEGIIGFVKE 239 Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++ ++ L P+ +G D I +++A ++ + ENVL F NNI +GGTH++G + A Sbjct: 240 INAKEEKLH-DPVFFKGEADGIMVEVAFQYVKDFQENVLGFCNNIYNSEGGTHITGFKQA 298 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 T + +Y + K + G D R G T+++SIK PDPRF QTK KL + + Sbjct: 299 FTTIMNNYAREIGVLKDKDANFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKA 358 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 D + + + + K +++ ++ +R +A+ K GKLA Sbjct: 359 AGKVTGDEVVRYFDRNLPVLKTVLECAERSAKIRKTEEKAKTNMLTKQK-YSFDANGKLA 417 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +C RD K E+F+VEGDSAGGSAK R+R QAI P+RGKILNVE+A DK+L++ EI Sbjct: 418 NCESRDASKCEIFIVEGDSAGGSAKMARNRMYQAIFPIRGKILNVEKATIDKVLANAEIK 477 Query: 476 TLITALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 ++I A G G + + FDI+KLRY KIIIM DADVDGAHI TLLLT F+R MP LI G Sbjct: 478 SMINAFGCGFSEGYGNDFDISKLRYDKIIIMADADVDGAHIATLLLTLFYRFMPELIFQG 537 Query: 533 FLYIIKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 +YI PPLY +Y+ D+++LE Y + + + G + L + Sbjct: 538 HVYIAMPPLYKTQPSKGEGEYLYDDKALERYRKKHAGEKFVLQRYKGLGEMDPQQLWDTT 597 Query: 592 -----DDALKIDKLIKDFYPNHDKTFI 613 +++ + + Sbjct: 598 LDPDKRKMRRVEIEDARMASEMTEILM 624 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 34/68 (50%), Positives = 49/68 (72%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLW+TTL+PD R + RV+I DA A ++ LMG++V PR+ FI + Sbjct: 579 LQRYKGLGEMDPQQLWDTTLDPDKRKMRRVEIEDARMASEMTEILMGNDVPPRKAFIYNH 638 Query: 796 SLPSALDI 803 + + LD+ Sbjct: 639 AADAELDV 646 >gi|313890229|ref|ZP_07823864.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313121590|gb|EFR44694.1| DNA topoisomerase IV, B subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 649 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 274/623 (43%), Positives = 394/623 (63%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VT+N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIKVTINADGSVSVADSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS WL++ I R+G++Y+ F N G + L SA TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSKWLEVEITRDGSVYKQRFENGGKPVSTLKKIASAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V++SL D R E Y+ G++ FVSYL+ Sbjct: 179 DDSIFSTTDFKFNTIAERLKESAFLLKDVKMSLTDLRGEEAVTEEFHYENGVQDFVSYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + + +A+++NDG+ +N+L F NN+ KDGG+H +GL++A+T Sbjct: 239 EDKETLTP-VIYVEGEEQDFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKTAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KVMNDYARKTSLLKDKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 VE V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VEGIVSEKLTYFLLENGELATNLVRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F I ++ Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FRIEEINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 534 LYIIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY +++GK + Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKTAKVSYAWTDGELEDLRREFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 +D + I I D + Sbjct: 597 TMDPETRTLIRVTIDDLARAERR 619 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 100/260 (38%), Gaps = 10/260 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMTDILKNEEINTMVYTIGAGVGADFRIEEINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT 717 D ++ + + + +F +Y R G K++ Sbjct: 501 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPLYKMSKGKGKTAKVS 558 Query: 718 G--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L+ + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 YAWTDGELEDLRREFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618 Query: 776 LFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638 >gi|73916414|gb|AAZ93075.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916448|gb|AAZ93092.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916454|gb|AAZ93095.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916456|gb|AAZ93096.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916458|gb|AAZ93097.1| topoisomerase IV subunit B [Streptococcus pneumoniae] gi|73916464|gb|AAZ93100.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 275/623 (44%), Positives = 390/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEG+SAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGNSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|302520521|ref|ZP_07272863.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] gi|318057387|ref|ZP_07976110.1| DNA gyrase subunit B [Streptomyces sp. SA3_actG] gi|318079451|ref|ZP_07986783.1| DNA gyrase subunit B [Streptomyces sp. SA3_actF] gi|302429416|gb|EFL01232.1| DNA gyrase, B subunit [Streptomyces sp. SPB78] Length = 718 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 287/653 (43%), Positives = 394/653 (60%), Gaps = 27/653 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + +I SSYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A Sbjct: 54 TSSIAESSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 112 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 113 DTIDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 172 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS+ +++ +K +G+++ + G+ PL G A + GT VTF D+ Sbjct: 173 GVGVSVVNALSTRVEVEVKTDGHVWTQQYERGVPIAPLHK-GEATQEHGTSVTFWADGDV 231 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222 F +++++TL R +E++FLN + I L D+R PE R +T Sbjct: 232 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERDSAKATAGADSAEVVDAEEAPEARTVT 291 Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279 Y+GGI FV Y R + + S I ++ +S+++AM+WN GY E V F N Sbjct: 292 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 351 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R ALT + Y ++ ++ GDD REG T+++S+K+ +P+F Sbjct: 352 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 411 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++E R+ V+ V + L+ W + +P EA I++K + A+ R AAR+ARDLT Sbjct: 412 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 471 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR QAILP+RGKILN Sbjct: 472 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 531 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR DK+L +QEI LI+A G G+ D FDI KLRYHKII+M DADVDG HI TLLLT Sbjct: 532 VEKARVDKILHNQEIQALISAFGAGV-HDDFDIEKLRYHKIILMADADVDGQHINTLLLT 590 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 F FR M L+ G +Y+ +PPLY I GK + D LI L + Sbjct: 591 FLFRFMRPLVEAGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALITLGRENGKRLREGAV 650 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + +D T + A +F+ +++ Sbjct: 651 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 701 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 6/89 (6%) Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L T+ G++ G ++QR+KGLGEM+A +L TT++ D R L +V + DA+QADD Sbjct: 631 RDALITLGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 689 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 LFS LMG++VE RR+FIQ N+ LDI Sbjct: 690 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 718 >gi|197311443|gb|ACH61925.1| DNA gyrase beta subunit [Acholeplasma sp. N93] Length = 549 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 269/554 (48%), Positives = 364/554 (65%), Gaps = 6/554 (1%) Query: 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92 G T GE GLHH+++E++DN+IDE+L GYA I V + V+DNGRGIP D+H + G Sbjct: 1 GST-GERGLHHLVWEIVDNSIDEALAGYASTIKVEVLPGDIIQVTDNGRGIPVDIHPKTG 59 Query: 93 ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 A E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS+W K+ I ++G YE + Sbjct: 60 RPAVETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSTWYKVEIHKDGTAYEQRYEY 119 Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLI 211 GI L + G + TGT TFL IF +N +TL++R+++L+FLN + I+LI Sbjct: 120 GIPAYDLKIIGPT-DKTGTITTFLADPKIFTETTHYNIETLKNRIQQLAFLNKGLMITLI 178 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 D R+ E E T Y+GGI +V YL++ K + I I +D I++++A+++ D Y Sbjct: 179 DSRTEERYEETFHYEGGIIEYVHYLNQSKSKIHPEVIYIDKEQDGITVEIALQYVDSYSP 238 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 N+ FTNNI +GG H G + ALTR ++ Y + ++ G+D REG T+++S Sbjct: 239 NIYSFTNNISTTEGGMHEDGFKLALTRVLSKYADDQKMK--KDDAISGEDTREGLTAIIS 296 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 +K P+P+F QTK KL + EVRS+ + L +L E+P +AK IV+KV+ A+ R A Sbjct: 297 VKHPEPQFEGQTKTKLGNPEVRSITSQITQEALERFLLENPAQAKSIVEKVILATRARVA 356 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 AR+A++LTRRK LD KLADC +DP+KSEL++VEGDSAGGSAKQGR E QAIL Sbjct: 357 ARKAKELTRRKSPLDALGFASKLADCRSKDPEKSELYIVEGDSAGGSAKQGRDSEFQAIL 416 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 PLRGK+LNVE+AR DKML+++EI LI A+GTGI D FDI K RYHKI+IMTDADVDGA Sbjct: 417 PLRGKVLNVEKARLDKMLNNKEIVNLIQAMGTGI-SDEFDITKSRYHKIVIMTDADVDGA 475 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 HIRTLLLTF FR M LI G++Y +PPLY IT GK+L Y +E + + Sbjct: 476 HIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYKITWGKNLVYAYSDEEMNAVVAKAESKPS 535 Query: 572 IELFCDSKGVISKN 585 I+ + + ++ Sbjct: 536 IQRYKGLGEMNAEQ 549 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 654 HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKYK-RIFSNRIEENYL----TILSL 707 G + DI R + V ++G+ I + + R I+ Y+ L Sbjct: 448 TGISDEFDITKSRYHKIVIMTDADVDGAHIRTLLLTFLFRHMRPLIDAGYVYAAQPPLYK 507 Query: 708 ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQ 749 I G + ++ + + S+QRYKGLGEMNA Q Sbjct: 508 ITWGKNLVYAYSDEEMNAVVAKAESKPSIQRYKGLGEMNAEQ 549 >gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315] gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781] gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763] gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719] gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299] gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115] gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300] gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224] gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937] gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98] gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117] gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102] gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819] gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1] gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796] gi|54037243|sp|P66937|GYRB_STAAN RecName: Full=DNA gyrase subunit B gi|54041556|sp|P66936|GYRB_STAAM RecName: Full=DNA gyrase subunit B gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315] gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781] gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763] gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719] gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299] gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115] gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300] gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224] gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937] gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98] gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102] gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117] gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981] gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819] gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796] gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03] gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172] gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193] Length = 644 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|57868974|gb|AAW57480.1| gyrase B [Candidatus Regiella insecticola] Length = 634 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 294/637 (46%), Positives = 405/637 (63%), Gaps = 11/637 (1%) Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTG 170 SYKVSGGLHGVG+SVVNALS L+L I REG I+E +++ G PL + G TG Sbjct: 1 DNSYKVSGGLHGVGISVVNALSEKLELVIHREGKIHEQTYMMGEPQTPLRIVGETA-QTG 59 Query: 171 TEVTFLPS-SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 T V F PS + +F YD L RLRELSFLNS + I L D+R + Y+GGI Sbjct: 60 TRVRFWPSLQTFTNNTEFQYDPLAKRLRELSFLNSGISIKLHDERDNKE--DHFHYEGGI 117 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 AFV YL+++K P+ +D+I +++A++WNDG+ EN+ CFTNNIPQ+DGGTHL Sbjct: 118 RAFVEYLNKNKNPIHPKIFYFSTIKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHL 177 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G R+A+TR + SY++K +KK K S GDD REG +V+S+K+PDP+FSSQTK+KLVS Sbjct: 178 VGFRTAMTRTLNSYMDKEGYNKKTKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 237 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SEV++ VE+ +N+ L +L E+P +AKI+V K++DA+ R+AARRAR++TRRKG LD+ Sbjct: 238 SEVKTAVETLMNEKLIEYLLENPTDAKIVVNKIIDAARAREAARRAREMTRRKGALDLGG 297 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML Sbjct: 298 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 357 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SSQE+ TLITALG GIG+D +D +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I Sbjct: 358 SSQEVATLITALGCGIGRDEYDPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEII 417 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G ++I +PPLY + +GK QY+KD+E++E Y I+ +L ++ L Sbjct: 418 ERGHVFIAQPPLYKVKKGKQEQYIKDDEAMEQYQISLALDGAALHTNAYAPALAGQALEK 477 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE 647 I + + K+I + + + + E+ ++E L LN + Sbjct: 478 LITEHYAVQKIIARMERRYPRALLNHLIYQPNLLQETLANKETVQQWIDSLVILLNQNEQ 537 Query: 648 KSEK-----SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + + + L++ GV + L+ I S + ++ Sbjct: 538 QGSHYSAIVRENTERQLFEPLLRTRTHGVDTDYPLDFDFIHSGEYRKLCQLGEKLRGLLE 597 Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRY 739 + G ++ + + LD + R+G+++QRY Sbjct: 598 QDAFVERGGRRLAVDSFEAALDWLVKESRRGLTIQRY 634 >gi|269124013|ref|YP_003306590.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112] gi|268315339|gb|ACZ01713.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112] Length = 660 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 273/663 (41%), Positives = 384/663 (57%), Gaps = 30/663 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y +SI +L+GLDAV+ RP MYIG T GLHH+++E++DN+IDE+L G D I Sbjct: 1 MSEKNYGGESITVLEGLDAVRVRPGMYIGTTSS-RGLHHLVWEIVDNSIDEALAGVCDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TV + D + DNGRGIPTD+H + G S EV+MT LHAGGKF+ +Y+ SGGLHGVG Sbjct: 60 TVKMLPDSEIEIIDNGRGIPTDMH-KSGKSTLEVVMTVLHAGGKFDNSNYQFSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFS 183 +SVVNALS L+ + R+G + F G + G A GT + F P +DIF Sbjct: 119 ISVVNALSEKLEATVTRDGRVVRQIFSKGNAITEALEIGKAPAKAHGTTIKFKPDADIFE 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YD LQ RL+EL++LN ++I LID ++ + +E +++GGI FV+ + Sbjct: 179 TIQFDYDILQRRLKELAYLNQGIKIILIDARKPEKVKEEVFYFEGGIVDFVTE-LVGEDK 237 Query: 243 LMQSPIRI-------QGS---------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 +++ I + +G +++AM + + F NNI DGG Sbjct: 238 IIEDVIYMKDRVMLTEGEVDDEGNPIPDKYSEVEIAMIYKNSQSTIEYSFVNNINTSDGG 297 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH+SGLR+ALTR I + K G+D REG VLS+K P+P+F SQTK K Sbjct: 298 THVSGLRTALTRTINDLARE----ASSKNEFKGEDVREGLVYVLSLKFPEPQFESQTKAK 353 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L SSE S+V L +LE+HP + K I+ K+ + R+AA+RARDL +K Sbjct: 354 LGSSEATSIVSGVFGSKLKMYLEDHPKDCKTIIDKIAISKQAREAAKRARDLVTKKNEFS 413 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 + LPGKLADC ++P++SE+F+VEGDSAGGSAKQGR +E QAILPLRGKILNVE+A Sbjct: 414 LGGLPGKLADCQSKNPEESEIFIVEGDSAGGSAKQGRFKEYQAILPLRGKILNVEKANEH 473 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 K+L + EI +ITA G G G D FDI KLRYHKIIIMTDADVDGAHIRTL+LTFF+R + Sbjct: 474 KILENSEIKAMITAFGAGFG-DRFDIEKLRYHKIIIMTDADVDGAHIRTLMLTFFYRYLR 532 Query: 527 SLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 LI+NG +YI +PPLY +T + + ++Y +E L+ ++ +K + Sbjct: 533 ELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVDNSGKNKYNV 592 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642 + ++ + + K +E A + + + Sbjct: 593 QRYKGLGEMNPDQLKETTMDPDVRTLLKVTLEDAQYADKMFSILMGDKVEPRREFIEEHA 652 Query: 643 NFI 645 N++ Sbjct: 653 NYV 655 Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 14/197 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E E + S++ + + ++ V + Sbjct: 464 ILNVEKANEHKILENSEIKAMITAFGAGFGDRFDIEKLRYHKIIIMTDADVDGAHIRTLM 523 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKI---TGPCSL--LDTIFSI----- 729 F + + I + I + + G K ++ L + + Sbjct: 524 LTFFYRYLRELINNGHIYIAQPPLYKVTTKSGKKEQVKYAYSDEQLKSITRVLDEKLGVD 583 Query: 730 --GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 G+ ++QRYKGLGEMN QL ETT++PD R+LL+V + DA AD +FS LMGD+VEP Sbjct: 584 NSGKNKYNVQRYKGLGEMNPDQLKETTMDPDVRTLLKVTLEDAQYADKMFSILMGDKVEP 643 Query: 788 RREFIQENSLPS-ALDI 803 RREFI+E++ LDI Sbjct: 644 RREFIEEHANYVRNLDI 660 >gi|111219512|ref|YP_710306.1| DNA gyrase subunit B [Frankia alni ACN14a] gi|111147044|emb|CAJ58691.1| DNA gyrase subunit B [Frankia alni ACN14a] Length = 656 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 283/589 (48%), Positives = 376/589 (63%), Gaps = 10/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + +YDA SI++L+GLDAV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D Sbjct: 8 EGTRRVAYDASSIKVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCD 66 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 ITV+L DG+ V DNGRGIP +H E A EV++T LHAGGKF+ KSY VSGGLHG Sbjct: 67 TITVSLLADGAVRVVDNGRGIPVGMHPTEKRPAVEVVLTTLHAGGKFDGKSYAVSGGLHG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ L + I+ +G+++ ++ PL V TGT VTF IF Sbjct: 127 VGVSVVNALSTKLDVEIQVDGHVWFQPYVGTRPAAPL-VKTGTTKKTGTSVTFWADPTIF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 ++ ++TL RL+E++FLN + I+LID+R E E+T Y G+ FV++L+ K Sbjct: 186 ETTEYKFETLSRRLQEMAFLNKGLSITLIDERPEERLEVTYKYTNGLVDFVAHLNATKDA 245 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +S I ++ I +LAM+WN GY E+V F N I +GGTH G R+ALT + + Sbjct: 246 IHRSVISLESKGVGIEAELAMQWNAGYSESVYTFANTINTHEGGTHEEGFRAALTSAVNA 305 Query: 303 YVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 Y + K K + GDD REG T+++S+K+ P+F QTK KL ++E + Sbjct: 306 YAKDQNLLKPVKAGAKSGDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAKKF 365 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V+ L W E + EA+ IV K LDA R AAR+ARDLTRRKG+L LPGKLA Sbjct: 366 VQEMCYSALKDWFEVNRTEARAIVSKSLDAQRARIAARQARDLTRRKGLLGGTGLPGKLA 425 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC DP++ EL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + E+ Sbjct: 426 DCQYTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTEVQ 485 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LI ALGTGI D FDI KLRYHKI++M DADVDG HIRTLLLT FR M L+ G ++ Sbjct: 486 ALIQALGTGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGHVF 544 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 + +PPLY I G+ + D L+ + + +L D+ Sbjct: 545 LAQPPLYKIKWGREDWEYAYSDRERDGLVQRGVEAGRKLPKDAIQRFKG 593 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS LMG++V+ RR FIQ N Sbjct: 588 IQRFKGLGEMNATELWDTTMDPDKRILLQVTLDDAAVADELFSVLMGEDVDARRSFIQRN 647 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 648 AKDVRFLDI 656 >gi|300214581|gb|ADJ78997.1| Topoisomerase IV subunit B [Lactobacillus salivarius CECT 5713] Length = 673 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 269/667 (40%), Positives = 391/667 (58%), Gaps = 15/667 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y+ DSIQ+LKGL+AV+KRP MYIG TD GLHH++YE+ DNA+DE+L GY I Sbjct: 1 MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGKEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV DNGRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 60 NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS L + R+G YE F+N G L G A +GT+VTF P ++IFS Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N++TL RLRE +FL V+I+L D+R+ E Y GI+ FV YL+ K L Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +G +D I +++A ++NDGY E ++ F NN+ KDGGTH +G+++A T+ Y Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K +++ G D REG ++V+S+++P+ +F QTK KL + E R +V+S VN Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L +L E+ A+ +V+K + A R+AAR+ARD +K L GKL Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G + F+I+ Y K+IIMTDAD DGAHI+TLLLTFF++ M +I+ G +YI P Sbjct: 478 TIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536 Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PLY I + ++Y + LE ++ + + + ++ Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPET 596 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + ++ + + + V E NV L + + + HG Sbjct: 597 RTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGAHG 654 Query: 656 SINNSDI 662 I++ + Sbjct: 655 EISDDKL 661 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ S + ++ ++ Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + + ++ ++ + I ++ N Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 494 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718 D ++ + F + I + R+ + + ++ Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554 Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+ Sbjct: 555 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 614 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 615 TTLMGDKVEPRRKWIEKN 632 >gi|227890873|ref|ZP_04008678.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC 11741] gi|227867282|gb|EEJ74703.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius ATCC 11741] Length = 690 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 269/669 (40%), Positives = 392/669 (58%), Gaps = 15/669 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ ++Y+ DSIQ+LKGL+AV+KRP MYIG TD GLHH++YE+ DNA+DE+L GY Sbjct: 16 KSMPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGK 74 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V ++ D S TV DNGRG+P +H GI EVI T LHAGGKF Q YK SGGLHG Sbjct: 75 EINVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHG 133 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS L + R+G YE F+N G L G A +GT+VTF P ++I Sbjct: 134 VGASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANI 193 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS +N++TL RLRE +FL V+I+L D+R+ E Y GI+ FV YL+ K Sbjct: 194 FSTTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKD 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + +G +D I +++A ++NDGY E ++ F NN+ KDGGTH +G+++A T+ Sbjct: 254 VLGP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFN 312 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y K K +++ G D REG ++V+S+++P+ +F QTK KL + E R +V+S Sbjct: 313 EYARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSV 372 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADC 417 VN+ L +L E+ A+ +V+K + A R+AAR+ARD +K L GKL Sbjct: 373 VNEQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPA 432 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+ Sbjct: 433 QSKNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTM 492 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I +G G+G + F+I+ Y K+IIMTDAD DGAHI+TLLLTFF++ M +I+ G +YI Sbjct: 493 IYTIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIA 551 Query: 538 KPPLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 PPLY I + ++Y + LE ++ + + + ++ Sbjct: 552 LPPLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNP 611 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSW 653 + ++ + + + V E NV L + + + Sbjct: 612 ETRTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGA 669 Query: 654 HGSINNSDI 662 HG I++ + Sbjct: 670 HGEISDDKL 678 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ S + ++ ++ Sbjct: 392 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 451 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + + ++ ++ + I ++ N Sbjct: 452 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 511 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718 D ++ + F + I + R+ + + ++ Sbjct: 512 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 571 Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+ Sbjct: 572 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 631 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 632 TTLMGDKVEPRRKWIEKN 649 >gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11] Length = 644 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEYRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|257887681|ref|ZP_05667334.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733] gi|257896175|ref|ZP_05675828.1| gram positive topoisomerase IV [Enterococcus faecium Com12] gi|257823735|gb|EEV50667.1| gram positive topoisomerase IV [Enterococcus faecium 1,141,733] gi|257832740|gb|EEV59161.1| gram positive topoisomerase IV [Enterococcus faecium Com12] Length = 665 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 265/648 (40%), Positives = 377/648 (58%), Gaps = 17/648 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 ++GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY I VT++ D S TV+ Sbjct: 1 MEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGSEIDVTIHEDNSITVA 59 Query: 78 DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137 D+GRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL + Sbjct: 60 DSGRGMPVGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLTV 118 Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 I R+G Y+ F N G D L G GT V FLP IFS F+Y+ L RL Sbjct: 119 TIVRDGVEYQQKFKNGGKPDGTLKKIGKTKKANGTIVHFLPDDTIFSTTKFSYEILAERL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 RE +FL V+ISL D R EP + Y+ GI+ FV YL+ K L + G ++ Sbjct: 179 RESAFLLKGVKISLSDLRGEEPVKEVFHYEEGIKEFVDYLNEEKDTLTP-VVYFSGEKEG 237 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 I +++A ++NDGY ENVL F NN+ KDGGTH +G+++A+T+ Y K K+ ++ Sbjct: 238 IEVEVAYQYNDGYSENVLSFVNNVRTKDGGTHEAGMKAAMTKSYNEYARKVGLLKERDKN 297 Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 + G D REG +VLSI++P+ +F QTKEKL + R+VV++ +++ + +L+E+ Sbjct: 298 LEGSDFREGLAAVLSIRVPENLLQFEGQTKEKLGTPVARTVVDNVISEQMGFYLQENSEM 357 Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432 ++++V+K + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEG Sbjct: 358 SQMLVRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEG 417 Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 DSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Sbjct: 418 DSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSI 476 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQY 552 Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G+ + Sbjct: 477 EDCNYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQ 536 Query: 553 VKDEESLED---YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 V + +D +I + + G ++ L +D + Sbjct: 537 VIEYAWTDDELAAMIKKVGKGYMLQRYKGLGEMNAEQLWET-----TMDPTSRTLIRVRI 591 Query: 610 KTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + + + + + + L +K I Sbjct: 592 DDAAQAERRVTTLMGDKVEPRRKWIENHVQFTLEEDGSILDKKEDTEI 639 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 8/259 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 362 VRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 421 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 422 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 481 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT-- 717 D ++ + F + I + ++ + + G K I Sbjct: 482 DKVIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGQGKKQVIEYA 541 Query: 718 -GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L I +G KG +QRYKGLGEMNA QLWETT++P +R+L+RV+I DA+QA+ Sbjct: 542 WTDDELAAMIKKVG-KGYMLQRYKGLGEMNAEQLWETTMDPTSRTLIRVRIDDAAQAERR 600 Query: 777 FSRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+ + Sbjct: 601 VTTLMGDKVEPRRKWIENH 619 >gi|332686601|ref|YP_004456375.1| DNA topoisomerase IV subunit B [Melissococcus plutonius ATCC 35311] gi|332370610|dbj|BAK21566.1| DNA topoisomerase IV subunit B [Melissococcus plutonius ATCC 35311] Length = 686 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 268/668 (40%), Positives = 394/668 (58%), Gaps = 15/668 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N++Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAKKI-NNAYNDTSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAVDEALSGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S ++D GRG+P +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNDIQVTIQKDNSIKIADLGRGMPVGIHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++RI R+G Y F N G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVRIVRDGIEYMERFENGGKPVGTLEKVGKTKKPNGTVVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS F+Y L RLRE +FL ++I+L D R EP++ YK GI+ FVSYL+ Sbjct: 178 TIFSTIQFSYTNLAERLRESAFLLKDIKITLTDLREDEPKQEIFHYKEGIKEFVSYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G ++ I ++L+ ++NDGY ENVL F NN+ KDGGTH G+++A+TR Sbjct: 238 KDTLTP-IVYFNGEKEGIEVELSYQYNDGYSENVLSFVNNVRTKDGGTHEIGMKTAMTRA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K+ +++ G D REG ++LSI++P+ +F QTKEKL + + R+ V+ Sbjct: 297 YNEYARRIGLLKERDKNLEGSDFREGLAAILSIRVPESLLQFEGQTKEKLGTPQARNSVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S + + +S +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 SVIGEQMSYYLQENSELSQTLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPQKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F+I Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 477 TMIYTIGAGVG-PEFNIEDCNYDKVIIMTDADTDGAHIQILLLTFFYRYMKPLIEAGKVY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + ++Y +E L+D + + ++ + + ++ + Sbjct: 536 IALPPLYKVSKGSGKKAQIEYAWTDEELKDVIQSIGKGYMLQRYKGLGEMNAEQLWETTM 595 Query: 592 -DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 ++ + ++ D ++ + + + L+ + E Sbjct: 596 APESRTLIRVRIDDTAQAERRVTTLMGDKVEPRRNWIETHVQFSLEEDGSILDRKENQKE 655 Query: 651 KSWHGSIN 658 S S Sbjct: 656 ISASVSNE 663 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 108/277 (38%), Gaps = 5/277 (1%) Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 + S + + + + + + + E + E L Sbjct: 360 GEQMSYYLQENSELSQTLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQ 419 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642 S+N +N + K + V N E + ++ ++ + Sbjct: 420 SRNPQKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMI 479 Query: 643 NFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 I ++ N D ++ + F + I + ++ Sbjct: 480 YTIGAGVGPEFNIEDCNYDKVIIMTDADTDGAHIQILLLTFFYRYMKPLIEAGKVYIALP 539 Query: 703 TILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + + G K +I L D I SIG KG +QRYKGLGEMNA QLWETT+ P+ Sbjct: 540 PLYKVSKGSGKKAQIEYAWTDEELKDVIQSIG-KGYMLQRYKGLGEMNAEQLWETTMAPE 598 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +R+L+RV+I D +QA+ + LMGD+VEPRR +I+ + Sbjct: 599 SRTLIRVRIDDTAQAERRVTTLMGDKVEPRRNWIETH 635 >gi|325955726|ref|YP_004286336.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC] gi|325332291|gb|ADZ06199.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC] Length = 654 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 276/626 (44%), Positives = 403/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+D + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADKSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLS 179 Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF+ D L++R+REL+FLN + ++ DKR ++ Sbjct: 180 EHGTIVHFYPDPDIFTETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDSAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L+++++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKNQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P+P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + + G + Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 121/368 (32%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPNPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPV- 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR FI++N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRSFIEKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|302552701|ref|ZP_07305043.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] gi|302470319|gb|EFL33412.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736] Length = 690 Score = 555 bits (1431), Expect = e-155, Method: Composition-based stats. Identities = 290/653 (44%), Positives = 399/653 (61%), Gaps = 24/653 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A Sbjct: 29 AEASATASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHA 87 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 88 DTIDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 147 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS + + +K +G + + G+ PL A +TGT VTF DI Sbjct: 148 GVGVSVVNALSSKVSVEVKTDGYRWTQEYKMGVPTAPLAK-HEATEETGTSVTFWADGDI 206 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225 F D++++TL R +E++FLN + I L D+R E + +T Y Sbjct: 207 FETTDYSFETLSRRFQEMAFLNKGLTIKLTDERESAKAVTGADEAGADEKAEVKAVTYHY 266 Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQ 282 +GGI FV Y R + + + I ++ ++S+++AM+WN GY E V F N I Sbjct: 267 EGGIVDFVKYLNSRKGEAVHPTVIDLEAEDRDKHLSLEIAMQWNGGYTEGVYSFANIIHT 326 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F Q Sbjct: 327 HEGGTHEEGFRAALTSLINKYARDKRLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 386 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E ++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRK Sbjct: 387 TKTKLGNTEAKTFVQKVVYEHLADWLDRNPNEAVDIIRKGIQAATARVAARKARDLTRRK 446 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 G+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+ Sbjct: 447 GLLETASLPGKLSDCQSNDPDKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 506 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F Sbjct: 507 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 565 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M L+ G +Y+ +PPLY I GK + D LI + + DS Sbjct: 566 RFMRPLVEAGHVYLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRNAGKRIKDDSVQRF 625 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 626 KG--LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 676 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 604 DALIEMGRNAGKRIKDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 663 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 664 SVLMGEDVEARRAFIQRNAKDVRFLDI 690 >gi|326406524|gb|ADZ63595.1| topoisomerase IV subunit B [Lactococcus lactis subsp. lactis CV56] Length = 644 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 268/595 (45%), Positives = 379/595 (63%), Gaps = 16/595 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I+VT Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +V D GRG+P H GI EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 65 INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALS+WL++ I R+G +Y F N G LV G A TGT+VTF+P S IFS Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ + RL E +FL V ISL DKR+ E Y+ G++ FVSYL+ K L Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G +D +++A+++NDGY EN+L F NN+ KDGGTH +GL++A+T+ + Y Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K+ +++ G D REG T+VLS+ +P+ +F QTK+KL S R VV+S V++ Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTAVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 LS +L E+ A+ +++K + A R+AAR+AR+ +K D L GKL ++ Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I + Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y ++ + + ++Y + L + + ++ + + + +D Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +KI+ L + K ++QRYKGLGEMNA QLWETT++P+TR+L++V I D Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607 Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795 A+QA+ S LMGD+VEPRR++I+ N Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633 >gi|90961848|ref|YP_535764.1| DNA topoisomerase IV subunit B [Lactobacillus salivarius UCC118] gi|90821042|gb|ABD99681.1| Topoisomerase IV subunit B [Lactobacillus salivarius UCC118] Length = 673 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 270/667 (40%), Positives = 391/667 (58%), Gaps = 15/667 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y+ DSIQ+LKGL+AV+KRP MYIG TD GLHH++YE+ DNA+DE+L GY I Sbjct: 1 MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIFDNAVDEALSGYGKEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV DNGRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 60 NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS L + R+G YE F+N G L G A +GT+VTF P ++IFS Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N++TL RLRE +FL V+I+L D+R+ E Y GI+ FV YL+ K L Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +G +D I +++A ++NDGY E ++ F NN+ KDGGTH +G+++A T+ Y Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K +++ G D REG ++V+S+++P+ +F QTK KL + E R +V+S VN Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L +L E+ A+ +V+K + A R+AAR+ARD +K L GKL Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G + F+IN Y K+IIMTDAD DGAHI+TLLLTFF++ M +I+ G +YI P Sbjct: 478 TIGAGVGAE-FNINDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536 Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PLY I + ++Y + LE ++ + + + ++ Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPET 596 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + ++ + + + V E NV L + + + HG Sbjct: 597 RTLVRVRIDDDTIAEKRVTTLMGDKVEPRRKWIEKNVKFT--LEEDGSLLDTVVAEGAHG 654 Query: 656 SINNSDI 662 I++ + Sbjct: 655 EISDDKL 661 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ S + ++ ++ Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + + ++ ++ + I ++ + N Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNINDANY 494 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718 D ++ + F + I + R+ + + ++ Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554 Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L++ +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV+I D + A+ Sbjct: 555 WTDAELESATKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVRIDDDTIAEKRV 614 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 615 TTLMGDKVEPRRKWIEKN 632 >gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2] gi|87161454|ref|YP_492727.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948] gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30] gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3] gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160] gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139] gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765] gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427] gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19] gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH70] gi|59797750|sp|Q6GD85|GYRB_STAAS RecName: Full=DNA gyrase subunit B gi|59799585|sp|P0A0K7|GYRB_STAAW RecName: Full=DNA gyrase subunit B gi|59799586|sp|P0A0K8|GYRB_STAAU RecName: Full=DNA gyrase subunit B gi|93204588|sp|Q2FKQ1|GYRB_STAA3 RecName: Full=DNA gyrase subunit B gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus] gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus] gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2] gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948] gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3] gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30] gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139] gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765] gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160] gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19] gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133] gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH70] gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46] gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189] Length = 644 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|15672961|ref|NP_267135.1| DNA topoisomerase IV subunit B [Lactococcus lactis subsp. lactis Il1403] gi|12723922|gb|AAK05077.1|AE006332_6 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis Il1403] Length = 644 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 268/595 (45%), Positives = 378/595 (63%), Gaps = 16/595 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++YD +IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ + I+VT Sbjct: 6 NNYDDSAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLVWEIVDNAVDEALSGFGNRISVT 64 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N DGS +V D GRG+P H GI EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 65 INADGSLSVEDEGRGMPVGKHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSV 123 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VNALS+WL++ I R+G +Y F N G LV G A TGT+VTF+P S IFS Sbjct: 124 VNALSTWLEVEITRDGTVYRQRFENGGHPATTLVKIGKAPKSKTGTKVTFMPDSSIFSTT 183 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F Y+ + RL E +FL V ISL DKR+ E Y+ G++ FVSYL+ K L Sbjct: 184 EFKYNIISERLNESAFLLKEVTISLEDKRTDEK--EEFHYENGVQDFVSYLNEDKDSLTP 241 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G +D +++A+++NDGY EN+L F NN+ KDGGTH +GL++A+T+ + Y Sbjct: 242 VL-YFEGKQDGFEVEVALQYNDGYSENILSFVNNVRTKDGGTHEAGLKTAITKAMNEYAR 300 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K+ +++ G D REG T VLS+ +P+ +F QTK+KL S R VV+S V++ Sbjct: 301 KVNLLKEKDKNLEGSDYREGLTVVLSVLIPEEHLQFEGQTKDKLGSPLARPVVDSLVSEK 360 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 LS +L E+ A+ +++K + A R+AAR+AR+ +K D L GKL ++ Sbjct: 361 LSFYLMENGELAQNLIRKAIKAREAREAARKAREDSRNGKKSKKDKGLLSGKLTPAQTKN 420 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I + Sbjct: 421 PNKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTI 480 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPL Sbjct: 481 GAGVGAD-FTLADRNYDKIIIMTDADTDGAHIQTLLLTFFYRYMKPLVEAGHVYIALPPL 539 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 Y ++ + + ++Y + L + + ++ + + + +D Sbjct: 540 YKMSEGKGKKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMD 594 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/86 (50%), Positives = 60/86 (69%) Query: 710 NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 +KI+ L + K ++QRYKGLGEMNA QLWETT++P+TR+L++V I D Sbjct: 548 KKEKIEYAWTDGELAELRKQFGKNANLQRYKGLGEMNADQLWETTMDPETRTLIQVTIDD 607 Query: 770 ASQADDLFSRLMGDEVEPRREFIQEN 795 A+QA+ S LMGD+VEPRR++I+ N Sbjct: 608 AAQAEKRVSVLMGDKVEPRRKWIENN 633 >gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876] gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635] gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101] gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809] gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus MN8] gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|59797755|sp|Q6GKU0|GYRB_STAAR RecName: Full=DNA gyrase subunit B gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876] gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635] gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20] gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101] gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Btn1260] gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809] gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus MN8] gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus TCH60] gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus CGS00] gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131] Length = 644 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476] gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MSSA476] Length = 643 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 5 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 63 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 64 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 123 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 124 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 182 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 183 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 242 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 243 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 302 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 303 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 362 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 363 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 422 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 423 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 482 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 483 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 541 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 542 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 592 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 510 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 567 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 568 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 624 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 625 VENRRQFIEDNAVYANLD 642 >gi|227506183|ref|ZP_03936232.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940] gi|227197207|gb|EEI77255.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940] Length = 684 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 270/690 (39%), Positives = 389/690 (56%), Gaps = 53/690 (7%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+EV+DN++DE++ GY Sbjct: 1 MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GVRGLHHLIWEVVDNSVDEAMAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A + V L DG V D+GRGIP ++H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 57 ATKVVVKLLADGGVEVIDDGRGIPVEMHA-TGAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKR+G + +F N I D + G TGT + F + Sbjct: 116 HGVGISVVNALSTRVEAEIKRDGKHWYQNFSNAIPDELVE--GGNARGTGTTIRFWADPE 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 IF +++Y T+ RL+E++FLN + I LID+R + + Sbjct: 174 IFETTEYDYQTIARRLQEMAFLNKGLTIELIDERVTKEQLELEAIADAESGETALEAESF 233 Query: 222 -------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 Y G+ +V +L++ K + + + ++ Sbjct: 234 DDIDVDAEADGPSEEKPAKKLQKKVVYHYPDGLIDYVKHLNKTKTSIHPTIVAFDVKGED 293 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 +++A++WN GY E+V F N I +GGTH G R+ALT + Y ++ K+ + Sbjct: 294 HEVEVALQWNQGYKESVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIKEKDGN 353 Query: 317 VIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 + G+DCREG ++V+S+K+ DP+F QTK KL +SE++ V+ VN+ ++ W + +P EAK Sbjct: 354 LSGEDCREGLSAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRAVNEHVNDWFDANPAEAK 413 Query: 377 IIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAG 436 I+ K + ++ R AAR+AR++ RRK D+ LPGKLADC +DPK SEL++VEGDSAG Sbjct: 414 AIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADCRSKDPKISELYIVEGDSAG 473 Query: 437 GSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLR 496 GSAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI ++ FDI KLR Sbjct: 474 GSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FDIEKLR 532 Query: 497 YHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVKD 555 Y+KI++M DADVDG HI TLLLT FR MP L+ +G +Y+ PPLY + GK Y Sbjct: 533 YNKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWGKGEPGYAFS 592 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 ++ + L + D N + D ++ Sbjct: 593 DDERDKLLAEGLENNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRILRRVDLEDAQR 652 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFI 645 A D S ++ A + F+ Sbjct: 653 ADELFSILMGDDVSARRSFITRRAKDVRFL 682 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 24/243 (9%) Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 +SE + DS G +K + L + I + ++ A + + Sbjct: 460 KISELYIVEGDSAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALG 519 Query: 627 DQEINVSLASKLA-NRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSF 685 KL N++ +A+ H + +L + + + V++ V Sbjct: 520 TGIHEEFDIEKLRYNKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHV---YLANPP 576 Query: 686 GSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGIS----MQRYKG 741 K ++ + ++ K LL RK I+ +QRYKG Sbjct: 577 LYK--------LKWGKGEPGYAFSDDERDK------LLAEGLENNRK-INKDDGIQRYKG 621 Query: 742 LGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA- 800 LGEMNAS+LWETTL+P TR L RV + DA +AD+LFS LMGD+V RR FI + Sbjct: 622 LGEMNASELWETTLDPSTRILRRVDLEDAQRADELFSILMGDDVSARRSFITRRAKDVRF 681 Query: 801 LDI 803 LD+ Sbjct: 682 LDV 684 >gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MRSA252] Length = 643 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 5 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 63 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 64 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 123 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 124 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 182 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 183 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 242 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 243 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 302 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 303 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 362 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 363 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 422 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 423 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 482 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 483 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 541 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 542 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 592 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 510 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 567 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 568 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 624 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 625 VENRRQFIEDNAVYANLD 642 >gi|301300621|ref|ZP_07206811.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851775|gb|EFK79469.1| DNA topoisomerase IV, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 673 Score = 555 bits (1430), Expect = e-155, Method: Composition-based stats. Identities = 261/597 (43%), Positives = 371/597 (62%), Gaps = 13/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y+ DSIQ+LKGL+AV+KRP MYIG TD GLHH++YE+ DNA+DE+L GY I Sbjct: 1 MPKNNYNDDSIQVLKGLEAVRKRPGMYIGSTD-TRGLHHLVYEIFDNAVDEALSGYGKEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V ++ D S TV DNGRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 60 NVIIHKDDSITVVDNGRGMPVGMHS-MGIPTVEVIFTVLHAGGKFGQGDYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS L + R+G YE F+N G L G A +GT+VTF P ++IFS Sbjct: 119 ASVVNALSSKLTVNTVRDGIEYEEDFVNGGQPVGTLRKIGKAKRKSGTKVTFKPDANIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N++TL RLRE +FL V+I+L D+R+ E Y GI+ FV YL+ K L Sbjct: 179 TTKYNFNTLAERLRESAFLLKGVKITLTDERTDPYTEEEFLYAEGIKEFVEYLNEDKDVL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +G +D I +++A ++NDGY E ++ F NN+ KDGGTH +G+++A T+ Y Sbjct: 239 GP-VMYFEGKKDGIEVEVAGQYNDGYSETIMSFVNNVRTKDGGTHEAGMKAAWTKAFNEY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K +++ G D REG ++V+S+++P+ +F QTK KL + E R +V+S VN Sbjct: 298 ARKINLLKDKDKNLEGSDVREGLSAVVSVRIPEELLQFEGQTKGKLGTPEARQIVDSVVN 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L +L E+ A+ +V+K + A R+AAR+ARD +K L GKL Sbjct: 358 EQLGYFLMENGDFAQELVRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 418 KNAKRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIY 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G + F+I+ Y K+IIMTDAD DGAHI+TLLLTFF++ M +I+ G +YI P Sbjct: 478 TIGAGVGAE-FNIDDANYDKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 536 Query: 540 PLYGITRGKS----LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY I + ++Y + LE ++ + + + ++ Sbjct: 537 PLYKIEKTVKKKRVIKYAWTDAELESVTKELKKGYTLQRYKGLGEMNADQLWETTMN 593 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ S + ++ ++ Sbjct: 375 VRKSIKAREAREAARKARDESRNGKKRRKSERLLSGKLTPAQSKNAKRNELFLVEGDSAG 434 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + + ++ ++ + I ++ N Sbjct: 435 GSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIMKNEEINTMIYTIGAGVGAEFNIDDANY 494 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718 D ++ + F + I + R+ + + ++ Sbjct: 495 DKVIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKIEKTVKKKRVIKYA 554 Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+++ +KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RVKI D + A+ Sbjct: 555 WTDAELESVTKELKKGYTLQRYKGLGEMNADQLWETTMNPETRTLVRVKIDDDTIAEKRV 614 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 615 TTLMGDKVEPRRKWIEKN 632 >gi|315613333|ref|ZP_07888242.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis ATCC 49296] gi|315314568|gb|EFU62611.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus sanguinis ATCC 49296] Length = 649 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 274/623 (43%), Positives = 393/623 (63%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGERIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L G+ A + TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGTVYKQRFENGGKPVTTLEKVGTAAKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTIDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKETLTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R + Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPI 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSLEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|293380895|ref|ZP_06626931.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1] gi|290922568|gb|EFD99534.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1] Length = 654 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179 Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF+ D L++R+REL+FLN + ++ DKR ++ Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y KS K ++ G+D REG T+++S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI KPPLY + +GK ++Y+ +E L DYL + S + G + Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNASNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|194467941|ref|ZP_03073927.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23] gi|194452794|gb|EDX41692.1| DNA topoisomerase IV, B subunit [Lactobacillus reuteri 100-23] Length = 669 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 261/599 (43%), Positives = 370/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKEEVK--YDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D + TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS L L I R+ Y+ F + G L G + GT V+F P Sbjct: 117 LHGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y+TL +RLRE +FL ++I+L DKR+ + ++ + GI+ FVSYL+ Sbjct: 177 PKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K ++ + G +D + +++A ++NDGY E++L F NN+ DGGTH +G RSA T+ Sbjct: 237 G-KDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y +K K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 ++ V++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY + R ++ Y E L G ++ + L Sbjct: 535 YIALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 592 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + ++ +N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + +I + L G K IT Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA A+ Sbjct: 558 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 618 TTLMGNKVEPRREWIEEN 635 >gi|70704703|gb|AAZ06859.1| DNA gyrase subunit B [Acholeplasma morum] gi|70704732|gb|AAZ06860.1| DNA gyrase subunit B [Acholeplasma morum] Length = 535 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 264/531 (49%), Positives = 363/531 (68%), Gaps = 4/531 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 GE GLHH+++E++DN+IDES+ GYA IT+ + D V+D+GRGIP D H + G SA Sbjct: 1 GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAKTGKSAV 60 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I R G +Y+ + GI Sbjct: 61 ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIPQ 120 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215 L G + + TGT + F S+IF+ F+++TL++R++EL+FLN ++IS+ D R Sbjct: 121 YELKEIGKSSH-TGTTIEFKADSEIFTEAQAFDFETLRNRIQELAFLNRHIKISITDSRG 179 Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 EP T Y+GGIE +V +L+ K + + DNI++++A+++ND Y N+ Sbjct: 180 KEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYTFKEVDNITVEIALQYNDSYATNIYS 239 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 FTNNI +GG H G + AL+R + +Y + + K + IG+D REG T+++SIK P Sbjct: 240 FTNNIHTHEGGMHEDGFKLALSRVLGNYAKDN-SLLKKDEAFIGEDTREGLTAIVSIKHP 298 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL + EVR +V +GL +L E+P AK I+ KV+ AS R AAR+A Sbjct: 299 NPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASRARIAARKA 358 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 ++ TRRK LD KLADC + P++SE+++VEGDSAGGSAKQGR QAILPLRG Sbjct: 359 KEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 418 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 K+LNVE+AR DK+LS++EI ++I A GTGIG+D FD +K RYHKI+IMTDADVDGAHIRT Sbjct: 419 KVLNVEKARLDKILSNKEILSMIQAFGTGIGED-FDASKARYHKIVIMTDADVDGAHIRT 477 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 L+LTF +R M LI G++Y+ +PPLY + GK ++Y+ DEE L L Sbjct: 478 LMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRAVLEQM 528 >gi|262046286|ref|ZP_06019249.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US] gi|295691867|ref|YP_003600477.1| DNA gyrase, b subunit [Lactobacillus crispatus ST1] gi|312977114|ref|ZP_07788863.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05] gi|260573616|gb|EEX30173.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US] gi|295029973|emb|CBL49452.1| DNA gyrase, B subunit [Lactobacillus crispatus ST1] gi|310896442|gb|EFQ45507.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05] Length = 654 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179 Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF+ D L++R+REL+FLN + ++ DKR ++ Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y KS K ++ G+D REG T+++S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI KPPLY + +GK ++Y+ +E L DYL + S + G + Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122] gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122] Length = 644 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIG-DDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSKLNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 22/205 (10%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + N +++ + + + + + + K + Sbjct: 455 LPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGDDFDLAKARYHK-----------I 503 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 V V + F + I + + + L K + L Sbjct: 504 VIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-L 562 Query: 724 DTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + + + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F Sbjct: 563 DKL----KSKLNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTF 618 Query: 778 SRLMGDEVEPRREFIQENSLPSALD 802 LMGD VE RR+FI++N++ + LD Sbjct: 619 EMLMGDVVENRRQFIEDNAVYANLD 643 >gi|315037235|ref|YP_004030803.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112] gi|312275368|gb|ADQ58008.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112] gi|327182554|gb|AEA31001.1| DNA gyrase subunit B [Lactobacillus amylovorus GRL 1118] Length = 654 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 276/626 (44%), Positives = 402/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+D + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADKSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLS 179 Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF+ D L++R+REL+FLN + ++ DKR ++ Sbjct: 180 EHGTIVHFYPDPDIFTETTVFDDKILKNRIRELAFLNKGLTLTFTDKRKDSAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKDQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P+P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + + G + Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 121/368 (32%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPNPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPV- 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR FI++N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRSFIEKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|170016363|ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citreum KM20] gi|169803220|gb|ACA81838.1| DNA gyrase, B subunit [Leuconostoc citreum KM20] Length = 669 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 277/572 (48%), Positives = 388/572 (67%), Gaps = 6/572 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 27 TVTANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 86 SHITVTIEADNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSD 180 GVG SVVNALS+ L +++ R+G +Y M F G ++ +V GT V F P +D Sbjct: 146 GVGASVVNALSTNLDVKVVRDGQVYYMDFKVGRVNTRMVKLDEKPTIARGTIVHFKPDAD 205 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FNY+TL R+REL+FLN ++IS+ D R+ P + Y+GGI+ +V YL+ Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRAETPMTESFHYEGGIKEYVKYLNAE 265 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + P+ ++G + I ++ A+++ +++ FTNNI +GGTH +G ++ALTR Sbjct: 266 KVVVFPEPVYVEGEENGIVVEAALQYTTDVKDSLRTFTNNINTYEGGTHETGFKTALTRV 325 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K++ S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 326 INDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P AK IV+K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 386 FSETFSRFMMENPAVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A DK+L+++EI +L T Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKVLANEEIRSLFT 505 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ +G++YI +P Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDSGYIYIAQP 564 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569 PLYG+ K+ +Y+ +E LEDYL + Sbjct: 565 PLYGVALGNSKNREYLDSDEELEDYLAQLPAN 596 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++P R LLRV DA AD +F LMGD+V PRREFI+EN Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLNRRLLRVDPADAEAADSIFDMLMGDDVAPRREFIEEN 660 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 661 AVFVENLDI 669 >gi|296110748|ref|YP_003621129.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154] gi|295832279|gb|ADG40160.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154] Length = 669 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 277/572 (48%), Positives = 387/572 (67%), Gaps = 6/572 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + Q Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 27 TVEAQAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 86 SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 GVG SVVNALS+ L +++ R+G +Y M F G ++ +V D GT V F P +D Sbjct: 146 GVGASVVNALSTNLDVKVVRDGQVYYMDFKIGRVNTRMVKLDEKPTIDRGTIVHFNPDAD 205 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FNY+TL R+REL+FLN ++IS+ D R P + ++GGI+ +V YL+ Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLETPVVESFHFEGGIKEYVEYLNAE 265 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + P+ ++G + I ++ A+++ +++ FTNNI +GGTH +G ++ALTR Sbjct: 266 KTVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFTNNINTYEGGTHETGFKTALTRV 325 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 326 INDYARKNGQLKDNAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P+ AK IV+K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 386 FSETFSRFMMENPVVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A DK+L+++EI +L T Sbjct: 446 NDPALSELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDKVLANEEIRSLFT 505 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ G++YI +P Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 564 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569 PLYG+ K+ +Y+ +E LE YL + Sbjct: 565 PLYGVALGNSKTREYLDTDEELETYLAQLPSN 596 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++P R LLRV TDA AD +F LMGD+V PRREFI+EN Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLNRRLLRVDPTDAEAADSIFDMLMGDDVAPRREFIEEN 660 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 661 AVFVENLDI 669 >gi|197294338|ref|YP_001798879.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense] gi|171853665|emb|CAM11548.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense] Length = 662 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 249/605 (41%), Positives = 377/605 (62%), Gaps = 28/605 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +Y+ADSIQIL+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+A+ IT+ Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGST-AAKGLHHLVWEIVDNSIDEALAGHANEITLE 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + +V+DNGRGIP +H + G A E I+T LHAGGKF+ SYK+SGGLHGVG SV Sbjct: 61 ILPGDIISVTDNGRGIPVGIHHKTGKPAVETILTTLHAGGKFDSSSYKISGGLHGVGASV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QD 186 VNALSSW + I + I+ + G+ PL V G + GT + FL IF Sbjct: 121 VNALSSWFSVEIHLDKKIHYQKYEKGVPVAPLEVIGKT-DRKGTVIKFLADPSIFQETTI 179 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQ 245 ++ L+ R+++LSFLN ++++LID+R +P +++ G++ ++++ + + Sbjct: 180 YDAKILKERIQQLSFLNKGLKLNLIDQRQEKPVSFNFYHEKGLQDYLTFINQTYMQKPFH 239 Query: 246 SPIRIQGSRDNISIDLAM----------------RWNDGYHEN--VLCFTNNIPQKDGGT 287 + ++ DN+++++ + Y + + F NNI +GGT Sbjct: 240 NLFVLEKELDNLALEIVFEYTVNDDEKSKQQEEEQAIKNYTQTQKIYSFVNNIHTHEGGT 299 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G + AL+R + Y + KK++ + +D EG T+++S+K DP+F QTK KL Sbjct: 300 HEEGFKLALSRNFSKYAKDYNLLKKNESLLS-EDILEGITAIISLKHQDPQFEGQTKAKL 358 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 + EVR +V + + L +L E+P +AK I++K L ++ R AA+RAR++ R K LD Sbjct: 359 GNVEVRQIVSQYFGEALGRFLLENPGDAKKIIEKCLLSANARLAAKRAREIVRNK-PLDT 417 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 KLADC +DPK SEL++VEGDSAGGSAKQGR QAILPL+GK+LNVE+ + K Sbjct: 418 LGFAAKLADCRSKDPKISELYIVEGDSAGGSAKQGRDSHFQAILPLKGKVLNVEKTQSSK 477 Query: 468 MLSSQEIGTLITALGTGI---GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 +L+++EI +LI A+G G+ Q + +++KLRYHKIIIMTDADVDGAHIRTLLLTFFFR Sbjct: 478 ILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRN 537 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 + LI G++Y +PPLY +GK++ Y +E+ D+ + +++ + G ++ Sbjct: 538 LRILIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDG-FQRYKGLGEMNP 596 Query: 585 NDLRN 589 + L Sbjct: 597 DQLWE 601 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 17/198 (8%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIA----RGVQEQFV 676 V N E Q + ++ + + I + + ++N + +I V + Sbjct: 467 VLNVEKTQSSKILTNKEIKSLIQAIGIGVDINKQKNLNLDKLRYHKIIIMTDADVDGAHI 526 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDT-IFSIGRKGIS 735 F F + I I + + +D + + G Sbjct: 527 RTLLLTFFFRNLRILIEKGYIYFARPPLYKYQKGKNITYFYEEKEKIDFSLKKNIKDGF- 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA----------SQADDLFSRLMGDEV 785 QRYKGLGEMN QLWETT+NP+ R+LL+ + DA +A+ F+ LMG EV Sbjct: 586 -QRYKGLGEMNPDQLWETTMNPEKRTLLQASLKDALNALSDEEAIKEANSTFNILMGKEV 644 Query: 786 EPRREFIQENSLPSALDI 803 PR+EFI N+L + LD+ Sbjct: 645 FPRKEFILNNALEADLDV 662 >gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398] Length = 644 Score = 555 bits (1429), Expect = e-155, Method: Composition-based stats. Identities = 290/591 (49%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F DI Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGDI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|329117688|ref|ZP_08246405.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD 2020] gi|326908093|gb|EGE55007.1| DNA topoisomerase IV, B subunit [Streptococcus parauberis NCFD 2020] Length = 651 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 271/649 (41%), Positives = 395/649 (60%), Gaps = 17/649 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTD-GTGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VT+N DGS +V D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNAIKVTINKDGSVSVEDSGRGMPTGKHA-MGIPTVQVIFTVLHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y F N G + L G+A TGT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLQVDITRDGVVYRQRFENGGKPVSTLKKIGTAPKSKTGTTVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL V+++L D R EP Y+ G++ FV YL+ Sbjct: 179 DETIFSSIDFKFNTIAERLKESAFLLKDVKMTLTDLRGDEPVVEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I I+G + +A+++NDG+ +N+L F NN+ KDGG+H +GL++A+T Sbjct: 239 EDKETLTP-VIYIEGQDQEFQVQVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKAAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R V Sbjct: 298 KVMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPV 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V+D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDGIVSDKLTYFLLENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I + Y K+IIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMIHTIGAGVGAD-FSIEDINYDKVIIMTDADTDGAHIQTLLLTFFYRYMRPLVEEGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PP Y ++ + + + Y + L+D ++ + + + Sbjct: 537 VYIALPPFYKMSKGKGKSEKIAYAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + I I D + + + + + +L Sbjct: 597 TMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 10/260 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 381 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMIHTIGAGVGADFSIEDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-----CNGDKIK 715 D ++ + + + +F +Y R +KI Sbjct: 501 DKVIIMTDADTDGAHI--QTLLLTFFYRYMRPLVEEGHVYIALPPFYKMSKGKGKSEKIA 558 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 LD + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 YAWTDGELDDLRKEFGKGAMLQRYKGLGEMNADQLWETTMDPETRTLIRVTIDDLARAER 618 Query: 776 LFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RVSVLMGDKAAPRRQWIEDN 638 >gi|331703026|ref|YP_004399713.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801581|emb|CBW53734.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 634 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 247/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + V DNGRGIP ++ + SA ++ T+LHAGGKF+ +SYK+SGGLHGVG S Sbjct: 61 TITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSKGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEIIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + ++I +++A+++N Y EN++ F NNI +GGTH GL+ AL R I Y Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA++AR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI ++ITA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + + ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI S LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|306834803|ref|ZP_07467867.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium accolens ATCC 49726] gi|304569331|gb|EFM44832.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium accolens ATCC 49726] Length = 689 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 276/695 (39%), Positives = 391/695 (56%), Gaps = 58/695 (8%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ +YDA SI IL+GL+AV+KRP MYIG T G GLHH+I+E++DN++DE++ G+ Sbjct: 1 MAE---EHAYDAGSITILEGLEAVRKRPGMYIGST-GSRGLHHLIWEIVDNSVDEAMAGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD +TV L DG V DNGRGIP ++H G +V+MT+LHAGGKF+ SY VSGGL Sbjct: 57 ADKVTVKLLEDGGVEVIDNGRGIPVEMHAS-GAPTVQVVMTQLHAGGKFDSDSYAVSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS+ ++ IKREG + +F N I D L V G TGT++ F + Sbjct: 116 HGVGISVVNALSTRVEAEIKREGKHWYQNFQNAIPD-DL-VEGGNARGTGTKIRFWADPE 173 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI------------------- 221 IF +F+YDT+ RL+E++FLN + I LID+R E + Sbjct: 174 IFETTEFDYDTIARRLQEMAFLNKGLTIELIDERVTEEQIELEEIADAESGEASADETSF 233 Query: 222 ------------------------------TMFYKGGIEAFVSYLDRHKKPLMQSPIRIQ 251 T Y G+ +V +L++ K + + + + Sbjct: 234 DDVPDAGDTFNEEADSKNVTKADKKRRKKITFHYPEGLTDYVKFLNKSKSAIHPTIVSFE 293 Query: 252 GSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSK 311 ++ +++A++WN GY ++V F N I +GGTH G R+ALT + Y ++ K Sbjct: 294 AKGEDHEVEVALQWNQGYKQSVHTFANTINTHEGGTHEEGFRAALTSLMNRYAKEHKLIK 353 Query: 312 KDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEH 371 ++ GDDCREG +V+S+K+ DP+F QTK KL +SE++ V+ VN+ ++ W + + Sbjct: 354 DKDGNLSGDDCREGLAAVISVKVGDPQFEGQTKTKLGNSEIKGFVQRSVNEYVNDWFDAN 413 Query: 372 PLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVE 431 P EAK I+ K + ++ R AAR+AR++ RRK D+ LPGKLADC +DP+ SEL++VE Sbjct: 414 PAEAKAIINKAVSSAHARMAARKAREMVRRKSATDLGGLPGKLADCRSKDPRSSELYIVE 473 Query: 432 GDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFD 491 GDSAGGSAK GR QAILPLRGKILNVE+AR DK+L + E+ +ITALGTGI ++ FD Sbjct: 474 GDSAGGSAKAGRDSMFQAILPLRGKILNVEKARMDKVLKNAEVQAIITALGTGIHEE-FD 532 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL- 550 I KLRY KI++M DADVDG HI TLLLT FR MP L+ +G +Y+ PPLY + K Sbjct: 533 IKKLRYDKIVLMADADVDGQHIATLLLTLLFRFMPQLVEDGHVYLANPPLYKLKWSKGTP 592 Query: 551 QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDK 610 Y ++ + L D N + D Sbjct: 593 GYAFSDDERDKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRVDL 652 Query: 611 TFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++A D S ++ A + F+ Sbjct: 653 EDAQRADELFSILMGDDVAARRSFITRRAKDVRFL 687 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 8/88 (9%) Query: 724 DTIFSIG---RKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G + I+ +QRYKGLGEMNAS+LWETTL+P TR L RV + DA +AD+L Sbjct: 602 DKLLAEGLEQNRKINKDDGIQRYKGLGEMNASELWETTLDPSTRLLRRVDLEDAQRADEL 661 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LDI Sbjct: 662 FSILMGDDVAARRSFITRRAKDVRFLDI 689 >gi|224543251|ref|ZP_03683790.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM 15897] gi|224523784|gb|EEF92889.1| hypothetical protein CATMIT_02451 [Catenibacterium mitsuokai DSM 15897] Length = 645 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 249/597 (41%), Positives = 368/597 (61%), Gaps = 15/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + N+ YD IQILKGL+AV+KRP MYIG TD GLHH+++E++DN+IDE++ GY I Sbjct: 3 MSNAHYDESDIQILKGLEAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEAIAGYGKKI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123 TVTL+ D S TV D GRG+PT ++KE G EVI+T LHAGGKF+ YK SGGLHGV Sbjct: 62 TVTLHKDNSVTVEDEGRGMPTGINKETGKPTTEVILTVLHAGGKFSEDGGYKTSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS +L++ + R+G I+ F G L G N TGT + F P + IF Sbjct: 122 GSSVVNALSEFLEVTVHRDGVIHTQRFEKGATKIGKLKKVGKT-NKTGTIIHFKPDASIF 180 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F++ T+ RLRE +FL + I LID+R+ + T Y+ G+E F+ +++ K+ Sbjct: 181 STTTFSFQTISERLREDAFLLKGMTIELIDERTDKD--ETYQYEKGLEEFIDWINNDKEA 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I + + I +++AM++ Y EN++ F N + DGGTH G RS LT+ Sbjct: 239 VSP-IISFDDTNNEIEVEIAMQFTQSYQENIISFVNLVRTGDGGTHEVGFRSGLTKVFNE 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ G D REG +++S+K+P+ +F QTK KL S R+++E+ Sbjct: 298 YARKYALLKAKDKNLEGSDVREGLNAIISVKIPEKYLQFEGQTKSKLGSPIARNILENVT 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419 + ++ +LEE+ A+ +++K++ A+ R AAR+A++ R+ K + L GKLA Sbjct: 358 FERITYFLEENKDIAEKLIEKMIKAANARQAARKAKEQARKGKNNREAKFLSGKLAPAQS 417 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI T+I Sbjct: 418 KNKRKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKATQADILKNEEISTMIN 477 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 + G+G D F+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI P Sbjct: 478 TINAGVGAD-FNADDSAYDKIIIMTDADTDGAHIQILLLTFFYRYMRDLIKAGKVYIAMP 536 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY ++ + ++ Y DE+ LE +++ + + ++ ++ Sbjct: 537 PLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGRGYDVQRYKGLGEMNAEQLWETTMN 593 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 7/180 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ +++ +N I ++ + D ++ + Sbjct: 455 VINTEKATQADILKNEEISTMINTINAGVGADFNADDSAYDKIIIMTDADTDGAHI--QI 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI-FSIGRK----GIS 735 + +F +Y R + + K D RK G Sbjct: 513 LLLTFFYRYMRDLIKAGKVYIAMPPLYKVSKKSGKKDNVIYCWDEKDLEAARKKMGRGYD 572 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L++V I DA+ + S LMGD+V+PRRE+I+ N Sbjct: 573 VQRYKGLGEMNAEQLWETTMNPETRTLIQVTIDDAAIVERSVSVLMGDKVQPRREWIENN 632 >gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB [Staphylococcus aureus subsp. aureus JKD6159] Length = 644 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEK 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|227529213|ref|ZP_03959262.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350859|gb|EEJ41150.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 676 Score = 554 bits (1428), Expect = e-155, Method: Composition-based stats. Identities = 261/599 (43%), Positives = 368/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +YDA SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MA--TKKETYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D S TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEEDNSITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS+ L L I R+ Y+ F + G L G GT V+F P Sbjct: 117 LHGVGASVVNALSTNLTLTIVRDHERYQEKFKDGGQPIGTLKKLGHTNAGNGTTVSFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF+ ++Y+TL +RLRE +FL ++I L DKR ++ YK GI+ FV+YL+ Sbjct: 177 PSIFTTTVYDYNTLANRLRESAFLLKGIKIVLTDKRKDHEKQDIFQYKEGIQEFVAYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + + GS+D + +++A ++NDGY E++L F NN+ DGGTH +G RSA T+ Sbjct: 237 G-KDTLGKVLYFDGSQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K K +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V Sbjct: 296 TFNEYAHKVGLLKDKDKNLEGSDVREGLTAVVSVRIPERILQFEGQTKDKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 +S V++ L L E+ A+++++K + A R+AAR+AR+ R ++ +L GKL Sbjct: 356 DSIVSEQLGYALMENGDFAQMLIRKSIKAREAREAARKARNQARGGKRKSRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY + + Y + L + L ++ G ++ + L Sbjct: 535 YIALPPLYRLQTGRGAKTKITYAWTNDELTE-LTKKAGKSAQLQRFKGLGEMNADQLWE 592 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 378 IRKSIKAREAREAARKARNQARGGKRKSRKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + ++ +N Sbjct: 438 GSAKQGRDRKYQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITG- 718 D ++ + F + I + +I + L G K KIT Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQTGRGAKTKITYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + K +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA A+ Sbjct: 558 WTNDELTELTKKAGKSAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I++N Sbjct: 618 TTLMGNKVEPRREWIEDN 635 >gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132] Length = 644 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 396/591 (67%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQVLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|104773262|ref|YP_618242.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422343|emb|CAI96851.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 653 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 283/614 (46%), Positives = 401/614 (65%), Gaps = 7/614 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 15 EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y ++F +G + L G+ + GT V F P +IF Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR+ ++GGI+ +VS+L+R ++ Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRNDTAETYVYHFEGGIKEYVSFLNRGQE 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G + I +++++++ GY ++ F NNI +GG H +G ++ALTR I Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVIN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K++ ++ G+D REG T+V+S+K P P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P A+ IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GAGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + I G + L D ++ Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610 Query: 601 IKDFYPNHDKTFIE 614 + P + K E Sbjct: 611 LDRVDPEYAKDADE 624 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R L RV A AD++F LMG+EV PRR+FI++N Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AQYVENLD 652 >gi|326692337|ref|ZP_08229342.1| DNA gyrase, B subunit [Leuconostoc argentinum KCTC 3773] Length = 669 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 281/613 (45%), Positives = 402/613 (65%), Gaps = 14/613 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 27 TVDANAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 86 SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 145 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 GVG SVVNALS+ L +R+ R+G +Y M F G ++ +V + GT V F P +D Sbjct: 146 GVGASVVNALSTDLDVRVVRDGQVYYMDFQVGRVNTNMVKLDEVPTIERGTIVHFKPDAD 205 Query: 181 IFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +NY+TL R+REL+FLN ++IS+ DKR EP + +++GGI+ +V+YL+ Sbjct: 206 IFRETTVYNYNTLLTRVRELAFLNKGLRISITDKRPEEPVTESFYFEGGIKEYVNYLNAE 265 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + P+ ++G + I +++A+++ +++ FTNNI +GGTH +G ++ALTR Sbjct: 266 KTVVFPEPVYVEGEENGIVVEVALQYTTDVKDSLRTFTNNINTYEGGTHETGFKTALTRV 325 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K++ S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 326 INDYARKNGQLKENAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P AK IV+K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 386 FSETFSRFMMENPSVAKQIVEKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A DK+L+++EI T+ T Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRLTQAILPIRGKILNVEKATLDKVLANEEIRTIFT 505 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M LI G++YI +P Sbjct: 506 AMGTGFG-DEFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLIDAGYIYIAQP 564 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PLYG+ K+ +Y+ +E LED+L + K + + +D Sbjct: 565 PLYGVALGNSKTREYLDSDEELEDFLAQL--------PANIKPKVQRYKGLGEMDFDQLA 616 Query: 598 DKLIKDFYPNHDK 610 D + + + Sbjct: 617 DTTMDPLHRRLLR 629 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++P R LLRV DA AD +F LMGD+V PRREFI+EN Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPLHRRLLRVDPADAEAADSIFDMLMGDDVAPRREFIEEN 660 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 661 AVFVENLDI 669 >gi|325685102|gb|EGD27233.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 653 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 284/614 (46%), Positives = 402/614 (65%), Gaps = 7/614 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 15 EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y ++F +G + L G+ + GT V F P +IF Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR ++GGI+ +VS+L+R ++ Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G + I +++++++ GY ++ F NNI +GG H +G ++ALTR + Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P A+ IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FDI+K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + I G + L D ++ Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610 Query: 601 IKDFYPNHDKTFIE 614 + P + K E Sbjct: 611 LDRVDPEYAKDADE 624 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R L RV A AD++F LMG+EV PRR+FI++N Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AQYVENLD 652 >gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 58-424] Length = 644 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 289/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP + ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVGIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K+DK + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|169351628|ref|ZP_02868566.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552] gi|169291850|gb|EDS73983.1| hypothetical protein CLOSPI_02409 [Clostridium spiroforme DSM 1552] Length = 641 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 293/639 (45%), Positives = 409/639 (64%), Gaps = 11/639 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MSEEKVKHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L D V D+GRG+PT H + GIS E I T LHAGGKF YKVSGGL Sbjct: 60 ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + R+G++Y F NG + L V G + + TGT VTF Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHVYYQRFENGGQPVDKLKVVGDS-DITGTIVTFKADK 178 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++YDTL R+REL+FLN +++SL D+R+ R+ Y+GGI+ +VS++++ Sbjct: 179 LIFKEGTVYDYDTLNQRIRELAFLNKGLRLSLEDQRNGINRKQVYHYEGGIKEYVSFINK 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ + I ++ + +I+I++AM++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 239 NKTPIHEEIIYVEDIQQDITIEVAMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRMALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y + KKD ++ GDD REG T+++S+K PDP++ QTK KL ++EVR + + Sbjct: 299 VINNYAKNKGLLKKDDETLSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 + L +L E+P AKIIV K + AS R AA++AR++TRRK L++++LPGKLADCS Sbjct: 359 IIATSLDKFLLENPDTAKIIVDKAIIASRARMAAKKAREMTRRKNPLEVSNLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP + E+F+VEGDSAGGSAK GR R QAILPLRGKILNVE++R +K+L + EI ++I Sbjct: 419 SKDPSECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R + LI NGF+Y + Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + GK Y +E LED + G ++ + L + Sbjct: 538 PPLYLLKHGKEEHYCYSDEELEDLKTKIGSGAKYSIQRYKGLGEMNADQLWET-----TM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + +E +I + E + + Sbjct: 593 DPQKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631 Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 15/271 (5%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 II + + L + + + + I + D Sbjct: 383 IIASRARMAAKKAREMTRRKNPLEVSNLPGKLADCSSKDPSECEIFIVEGDSAGGSAKMG 442 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + ++ +E++ + + + + + + + N + K Sbjct: 443 RDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMITAFGTGIGEEFNLDKLRYHK---- 498 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 +V V + F + I + + + L ++ Sbjct: 499 -------IVIMTDADVDGGHIRILMLTFLYRYLKPLIENGFVYAAQPPLYLLKHGKEEHY 551 Query: 716 ITGPCSL--LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 L L T G K S+QRYKGLGEMNA QLWETT++P R L ++ + +A +A Sbjct: 552 CYSDEELEDLKTKIGSGAK-YSIQRYKGLGEMNADQLWETTMDPQKRILNQIDLDEAMEA 610 Query: 774 DDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 D +F LMG++VEPRREFIQEN+ LDI Sbjct: 611 DMIFDMLMGEKVEPRREFIQENAKYVTDLDI 641 >gi|319937326|ref|ZP_08011733.1| DNA topoisomerase parE [Coprobacillus sp. 29_1] gi|319807692|gb|EFW04285.1| DNA topoisomerase parE [Coprobacillus sp. 29_1] Length = 642 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 262/597 (43%), Positives = 377/597 (63%), Gaps = 16/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++++ YD +IQIL+GL+AV+KRP MYIG TD GLHH+++E++DNAIDESL G+ + I Sbjct: 1 MKSNHYDESNIQILEGLEAVRKRPGMYIGSTDY-RGLHHLVWEIVDNAIDESLAGFGNKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123 TVT+ D + V D GRG+PT LH G EVI+T LHAGGKF+ YK SGGLHGV Sbjct: 60 TVTIGSDNTIKVEDEGRGMPTGLHAS-GKPTTEVILTILHAGGKFSEDGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFING-ILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL++ + R+G I++ F +G + +PL V G N TGT + F P+ +IF Sbjct: 119 GSSVVNALSEWLEVTVYRDGKIHQQKFEDGAKIISPLKVIGKT-NRTGTTIHFKPNKEIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S DFNY T+ RLRE +FL +++ +ID+R+ + T Y+ G+EAF+ YL+ KK Sbjct: 178 STIDFNYSTICERLRESAFLLKGIEMIVIDERTGK--HETFQYENGLEAFIDYLNYEKKV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + + I +++A ++ +GY EN++ F N + DGGTH +G RS T+ Sbjct: 236 LH-KTVSFDDESNPIEVEIAFQFTEGYQENLISFVNLVRTGDGGTHETGFRSGFTKVFNE 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K K +++ G D REG T ++S+K+P+ +F QTK KL S E R++VE+ V Sbjct: 295 YARKYGLLKTKDKNLEGADVREGLTGIISVKIPESLLQFEGQTKSKLGSPEARNIVENVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419 + ++ +LEE+ A +V K++ A+ R+AAR+AR+ R+ KG L GKLA Sbjct: 355 YEQINYFLEENKDVANQLVNKMIKAAQARNAARKAREEARKGKGNKVEKILSGKLAPAQS 414 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D KK EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI T+I Sbjct: 415 KDKKKKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEISTIIN 474 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F+ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI +G +YI P Sbjct: 475 TVGAGVGAD-FNADDSNYAKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGRVYIAMP 533 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY ++ + + Y D++ LED ++ + + + ++ Sbjct: 534 PLYKVSKKNGKHEDSLYAWDDDELEDAKKKIGRGYGVQRYKGLGEMNADQLWETTMN 590 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 15/262 (5%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + ++ + ++E K +++ + ++ Sbjct: 373 VNKMIKAAQARNAARKAREEARKGKGNKVEKILSGKLAPAQSK-DKKKKELYLVEGDSAG 431 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E ++ +++ +N + ++ +N Sbjct: 432 GSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEISTIINTVGAGVGADFNADDSNY 491 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 ++ + F + I S R+ + + K + Sbjct: 492 AKVIIMTDADTDGAHIQVLLLTFFYRYMRGLIQSGRVYIAMPPLYKVSKKNGKHE----D 547 Query: 721 SLLDTI---FSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 SL +K G +QRYKGLGEMNA QLWETT+NP+TR+L++V I DA+ Sbjct: 548 SLYAWDDDELEDAKKKIGRGYGVQRYKGLGEMNADQLWETTMNPETRTLIQVSIEDAALV 607 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+VEPRRE+I++N Sbjct: 608 ERRVSVLMGDKVEPRREWIEDN 629 >gi|302543959|ref|ZP_07296301.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461577|gb|EFL24670.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653] Length = 676 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 284/652 (43%), Positives = 390/652 (59%), Gaps = 12/652 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + + SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD Sbjct: 26 EALAPPSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHAD 84 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHG Sbjct: 85 TIDVTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 144 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS + + +K +G + + G+ PL A +TGT VTF DIF Sbjct: 145 VGVSVVNALSSKVSVEVKTDGYRWTQDYKTGVPTAPLAK-NEATEETGTTVTFWADGDIF 203 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY- 235 +++++TL R +E++FLN + ISL D+R +P + Y+GGI FV+Y Sbjct: 204 ETTEYSFETLSRRFQEMAFLNKGLSISLTDEREAHVDEEGKPLSVKYHYEGGIVDFVTYL 263 Query: 236 LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 R + + + I + +S+++AM+WN Y E V F N I +GGTH G R Sbjct: 264 NSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYSEGVYSFANTIHTHEGGTHEEGFR 323 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT I Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++E + Sbjct: 324 AALTYLINKYARDRKLLREKDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEAK 383 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 + V+ VN+ L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ ASLPGK Sbjct: 384 TFVQKIVNEHLADWLDRNPNEAADIIRKGIQAATARVAARKARDLTRRKGLLETASLPGK 443 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L+DC DP K E+F+VEGDSAGGSAK GR + QAILP+RGKILNVE+AR DK+L + E Sbjct: 444 LSDCQSNDPSKCEIFIVEGDSAGGSAKSGRDPQYQAILPIRGKILNVEKARVDKILQNNE 503 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M L+ G Sbjct: 504 VQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAGH 562 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +++ +PPLY I G+ + D LI + + DS N + Sbjct: 563 VFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGREQGKRIKDDSVQRFKGLGEMNAEEL 622 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 + L QA D E S + A + F+ Sbjct: 623 RVTTMDLDSRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 674 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + GR K S+QR+KGLGEMNA +L TT++ D+R L +V + DA+QADDLF Sbjct: 590 DALIQAGREQGKRIKDDSVQRFKGLGEMNAEELRVTTMDLDSRVLGQVTLDDAAQADDLF 649 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676 >gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754] gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754] Length = 644 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV-DTTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|313122780|ref|YP_004033039.1| DNA gyrase subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279343|gb|ADQ60062.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 653 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 284/614 (46%), Positives = 401/614 (65%), Gaps = 7/614 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 15 EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y ++F +G + L G+ + GT V F P +IF Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR ++GGI+ +VS+L+R ++ Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G + I +++++++ GY ++ F NNI +GG H +G ++ALTR + Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K+ ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYAHKTKILKESDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P A+ IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FDI+K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDISKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + I G + L D ++ Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610 Query: 601 IKDFYPNHDKTFIE 614 + P + K E Sbjct: 611 LDRVDPEYAKDADE 624 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R L RV A AD++F LMG+EV PRR+FI++N Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AQYVENLD 652 >gi|453419|emb|CAA54665.1| gyrB [Mycoplasma hominis ATCC 23114] Length = 648 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 251/600 (41%), Positives = 368/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Y+AD+IQIL+GL+AV+KRP MYIG G GLHH+++E++DN++DE++ G+ Sbjct: 1 MDKIEEIHKYNADNIQILEGLEAVRKRPGMYIGSI-GFKGLHHLLWEIVDNSVDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I + L + V DNGRG+PT +H SA E I+T LHAGGKF+ +YKVSGGL Sbjct: 60 ATEIKIKLYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVG SVVNALSS ++ +KR+G ++ F N GI PL V G+ + +TGT + F P Sbjct: 120 HGVGASVVNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNFSEVETGTTIKFHPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I ++F +DT+ +++++LN ++I + + ++GG+ +V L++ Sbjct: 180 YTIMEKENFFFDTIIDHSKQIAYLNKGLKI--TVENVEKNIIKVFCFEGGLIDYVKELNK 237 Query: 239 HKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 KK ++ I +G + ++ +++AM++N+ Y +++ + NNI DGGTH Sbjct: 238 GKKLIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQ 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G AL R +Y E + K + +D +EG +++SIK DP F QTK KL + Sbjct: 298 GFYDALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENK 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R ++D L +L E+P A+ I++K L + R +AR+ +R+ LD+ +L Sbjct: 358 DARIATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS ++ + ELF+VEG+SAGGSAK GR R QAILPLRGK++N E+ F +LS Sbjct: 418 PGKLADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLS 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI T+I ALGTGI FDINKL+YHKIIIMTDADVDGAHI TLLLTFF+R M LI Sbjct: 478 NKEIATMIHALGTGI-NTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIE 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 GF+Y+ +PPLY IT GK+++Y ++ E + + G + L Sbjct: 537 YGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWE 596 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +V ++A ++ + + + ++ V + Sbjct: 464 VINAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLL 523 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738 F + I + L I +G ++ + I + ++ +++QR Sbjct: 524 LTFFYRYMKPLIEYGFVY-LAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P+TR +L+V+I DA+ D +F+ LMG+E+EPR +FIQEN+ Sbjct: 583 YKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKY 642 Query: 799 S-ALDI 803 + +DI Sbjct: 643 ANNIDI 648 >gi|323127404|gb|ADX24701.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 649 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 274/650 (42%), Positives = 398/650 (61%), Gaps = 19/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGDDIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ Sbjct: 179 DDKIFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDSIVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED I G ++ N L Sbjct: 537 VYIALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWE 595 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K + Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 560 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|73916418|gb|AAZ93077.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 647 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 275/623 (44%), Positives = 389/623 (62%), Gaps = 19/623 (3%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +G +SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGFKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAVVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAIL LRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILSLRGKVVNTAKAKMADILKNKE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LE+ ++ + + + Sbjct: 535 VYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWET 594 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 ++ + I I+D + Sbjct: 595 TMNPETRTLIRVTIEDLARAERR 617 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKITG--PCSLLDTIFSIGRKGIS 735 + +F +Y R G K ++ L+ + KG + Sbjct: 517 LLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGAT 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMGD+VEPRR++I++N Sbjct: 577 LQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 636 >gi|71910524|ref|YP_282074.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005] gi|71853306|gb|AAZ51329.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS5005] Length = 649 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 274/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 VES V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED I G ++ N L Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713 N D ++ + F + + + + L L + G +K Sbjct: 498 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 556 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A Sbjct: 557 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 616 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+ PRR++I++N Sbjct: 617 ERRVSVLMGDKAAPRRQWIEDN 638 >gi|227543440|ref|ZP_03973489.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A] gi|300910107|ref|ZP_07127567.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri SD2112] gi|227186592|gb|EEI66663.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri CF48-3A] gi|300892755|gb|EFK86115.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri SD2112] Length = 674 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 260/595 (43%), Positives = 369/595 (62%), Gaps = 15/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + YDA SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY D I Sbjct: 8 KEEVKYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGDEI 66 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHGV 123 VT+ D + TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGGLHGV Sbjct: 67 NVTIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 125 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALSS L L I R+ Y+ F + G L G + GT V+F P IF Sbjct: 126 GASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S ++Y+TL +RLRE +FL ++I+L DKR+ + ++ + GI+ FVSYL+ K Sbjct: 186 STTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFDNGIQEFVSYLNEG-KD 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ + G +D + +++A ++NDGY E++L F NN+ DGGTH +G RSA T+ Sbjct: 245 VLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNE 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y +K K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V++ V Sbjct: 305 YAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIVDAIV 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 ++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 365 SEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQ 424 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+I Sbjct: 425 SKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTII 484 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G +YI Sbjct: 485 YTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIAL 543 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + R ++ Y E L G ++ + L Sbjct: 544 PPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 597 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 442 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + ++ +N Sbjct: 443 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 502 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + +I + L G K IT Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 562 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QR+KGLGEMNA QLWETT+NP+TR+L++V+I DA A+ Sbjct: 563 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRV 622 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 623 TTLMGNKVEPRREWIEEN 640 >gi|222097051|ref|YP_002531108.1| DNA topoisomerase iv subunit b [Bacillus cereus Q1] gi|221241109|gb|ACM13819.1| DNA topoisomerase IV, B subunit [Bacillus cereus Q1] Length = 640 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 261/646 (40%), Positives = 393/646 (60%), Gaps = 18/646 (2%) Query: 18 LKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVS 77 L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D I+V ++ D S +V Sbjct: 2 LEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDEISVVIHKDNSISVI 60 Query: 78 DNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKL 137 D GRG+PT +H + G EVI+T LHAGGKF Q YK SGGLHGVG SVVNALS WL + Sbjct: 61 DKGRGMPTGMH-KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVV 119 Query: 138 RIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRL 196 IKR+GNIYE F N G+ L G ++GT + F P + IFS ++NY+TL RL Sbjct: 120 TIKRDGNIYEQRFENGGVPVTTLEKIGKTK-ESGTTMHFKPDTTIFSTTNYNYETLCERL 178 Query: 197 RELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN 256 RE +FL ++IS+ D+R+ E Y+ GIEAFVSYL+ K + + G ++ Sbjct: 179 RESAFLLKGMKISIKDERND--LEDVFHYETGIEAFVSYLNEEKDSIHP-VVYFTGEQNG 235 Query: 257 ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRS 316 I +LA ++NDGY EN+L F NN+ KDGGTH +G ++A+TR Y K K+ ++ Sbjct: 236 IEAELAFQFNDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFNEYARKVSLLKEKDKN 295 Query: 317 VIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 + G D REG +++S+++P+ +F QTK KL +SE RS +++ V++ L+ +LEE+P Sbjct: 296 LEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAIVSEHLAYFLEENPDV 355 Query: 375 AKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEG 432 A ++V+K + A+ R+AAR+AR+ T +K +L GKL R+P+K+EL+LVEG Sbjct: 356 ATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPAQSRNPQKNELYLVEG 415 Query: 433 DSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI 492 DSAGGSAKQGR R QA+LPLRGK++N E+A+ + ++EI T+I A+G G+G + FD+ Sbjct: 416 DSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYAIGGGVGNE-FDV 474 Query: 493 NKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGK 548 + Y K++IMTDAD DGAHI+ LLLTFF+R M LI G ++I PPLY ++ + + Sbjct: 475 EDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSE 534 Query: 549 SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK--IDKLIKDFYP 606 ++Y ++ L++ ++ + + + ++ + I I D Sbjct: 535 VIEYAWSDDELDEVTKKVGKGYMLQRYKGLGEMNADQLWETTMNPETRTLIRVKIDDAAR 594 Query: 607 NHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + ++ + + + N + ++E Sbjct: 595 AERRVTTLMGDKVEPRRKWIERNVQFGMQEEGNILENEMIMETEVE 640 Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I + N D +V + Sbjct: 440 VINTEKAKLADIFKNEEINTIIYAIGGGVGNEFDVEDINYDKVVIMTDADTDGAHIQVLL 499 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---TGPCSLLDTIFSIGRKGISMQ 737 F + I + ++ + + K ++ LD + KG +Q Sbjct: 500 LTFFYRYMKPLIEAGKVFIALPPLYKVSKGKGKSEVIEYAWSDDELDEVTKKVGKGYMLQ 559 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RVKI DA++A+ + LMGD+VEPRR++I+ N Sbjct: 560 RYKGLGEMNADQLWETTMNPETRTLIRVKIDDAARAERRVTTLMGDKVEPRRKWIERN 617 >gi|326803543|ref|YP_004321361.1| DNA topoisomerase IV, B subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650531|gb|AEA00714.1| DNA topoisomerase IV, B subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 691 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 260/674 (38%), Positives = 389/674 (57%), Gaps = 22/674 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N ++YD SIQIL+GL+AV+KRP MYIG TD GLHH++YE++DN+IDE+L GY Sbjct: 1 MAKN-SKATYDESSIQILEGLEAVRKRPGMYIGSTDN-RGLHHLVYEIVDNSIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I+VT++ D S TV+DNGRG+P H G EVI+T LHAGGKF++ +YK SGGL Sbjct: 59 CDEISVTIHEDNSVTVTDNGRGMPIGKHSS-GKPTVEVILTVLHAGGKFSESAYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++ + R+ Y SF G + +T TGT + F P Sbjct: 118 HGVGSSVVNALSDSLEVTVYRDNKKYYQSFSQGGKPHKPKLTSHKSKQTGTSIHFHPDPK 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF +FN DT++ +LRE +FL + I D+++ + + Y+ G+ F+ YL+ +K Sbjct: 178 IFGATEFNSDTIKEQLREKAFLTKGLAIHFTDEKTDS--QESFHYEDGLVEFIHYLNENK 235 Query: 241 KPLMQSPIRIQGSR-DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + L + NI ++LA ++NDGY E +L F NN+ DGGTH + L++ +T+ Sbjct: 236 EVLQGVTYIEDKDKSSNIEMELAFQYNDGYSETILSFVNNVRTPDGGTHETALKTGMTKA 295 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K ++++ G D REGFT+V+S+++P+ +F QTK KL + + R VE Sbjct: 296 FNEYARKVNLIKPKEKNLEGSDVREGFTAVISVRIPEEILQFEGQTKGKLGTPQARLAVE 355 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 + VN LS +L E+ A+++V+K + A R+AAR+AR+ +R +KG L GKL Sbjct: 356 NMVNTHLSIYLLENGEIAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETLLSGKLT 415 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ KK+ELFLVEGDSAGGSAK GR R+ QAILPLRGK+LN E+A +L ++E+ Sbjct: 416 PAQSKNTKKNELFLVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDILKNEELN 475 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G FDI+ Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 476 TIIHTVGAGVG-PEFDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 534 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + + Y +E L ++ + + + + Sbjct: 535 IAMPPLYKLSRGKGKNEKIAYAWTDEELAQETKKFGKGYTLQRYKGLGEMNADQLWDTTM 594 Query: 592 DDALK--IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + I + D + + E ++ + + + E + Sbjct: 595 NPETRTLIRVTLDDLSQAEKRV-----SVLMGNKVEPRRDWIEDNVQFTMDEEDKLLEHA 649 Query: 650 EKSWHGSINNSDIL 663 + +I S+++ Sbjct: 650 NHEENDAIEASELI 663 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 11/267 (4%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I + + + + + + E + S+E L SKN ++ Sbjct: 372 IAQMLVRKAIKARQTREAARKAREESRHSKKGKSKETLLSGKLTPAQSKN---TKKNELF 428 Query: 596 KIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + QA++ V N E ++ +L ++ + Sbjct: 429 LVEGDSAGGSAKLGRDRKFQAILPLRGKVLNTEKASLTDILKNEELNTIIHTVGAGVGPE 488 Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NG 711 + +N D ++ + F + I + ++ + L G Sbjct: 489 FDIHDSNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIAMPPLYKLSRGKG 548 Query: 712 DKIKIT---GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 KI L G KG ++QRYKGLGEMNA QLW+TT+NP+TR+L+RV + Sbjct: 549 KNEKIAYAWTDEELAQETKKFG-KGYTLQRYKGLGEMNADQLWDTTMNPETRTLIRVTLD 607 Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795 D SQA+ S LMG++VEPRR++I++N Sbjct: 608 DLSQAEKRVSVLMGNKVEPRRDWIEDN 634 >gi|116513233|ref|YP_812139.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092548|gb|ABJ57701.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325124860|gb|ADY84190.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 653 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 283/614 (46%), Positives = 400/614 (65%), Gaps = 7/614 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 15 EQEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N D S TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEVTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y ++F +G + L G+ + GT V F P +IF Sbjct: 134 GASVVNALSTKLNVTVMRDGKKYYIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR ++GGI+ +VS+L+R ++ Sbjct: 194 TETTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQE 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G + I +++++++ GY ++ F NNI +GG H +G ++ALTR I Sbjct: 254 VLFDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVIN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K++ ++ G+D REG T+V+S+K P P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYAHKAKILKENDDNLSGEDIREGMTAVISVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P A+ IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 ETFSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL TAL Sbjct: 434 PNISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GAGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + I G + L D ++ Sbjct: 553 YQVRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRR 610 Query: 601 IKDFYPNHDKTFIE 614 + P + K E Sbjct: 611 LDRVDPEYAKDADE 624 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R L RV A AD++F LMG+EV PRR+FI++N Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPEYAKDADEVFEMLMGNEVGPRRKFIEDN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AQYVENLD 652 >gi|269115151|ref|YP_003302914.1| DNA gyrase subunit B [Mycoplasma hominis] gi|290457646|sp|P43053|GYRB_MYCHP RecName: Full=DNA gyrase subunit B gi|268322776|emb|CAX37511.1| DNA gyrase subunit B [Mycoplasma hominis ATCC 23114] Length = 648 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 251/600 (41%), Positives = 369/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Y+AD+IQIL+GL+AV+KRP MYIG G GLHH+++E++DN++DE++ G+ Sbjct: 1 MDKIEEIHKYNADNIQILEGLEAVRKRPGMYIGSI-GFKGLHHLLWEIVDNSVDEAMAGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I + L + V DNGRG+PT +H SA E I+T LHAGGKF+ +YKVSGGL Sbjct: 60 ATEIKIKLYPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPS 178 HGVG SVVNALSS ++ +KR+G ++ F N GI PL V G+ + +TGT + F P Sbjct: 120 HGVGASVVNALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPD 179 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 I ++F++DT+ +++++LN ++I + + ++GG+ +V L++ Sbjct: 180 YTIMEKENFDFDTIIDHSKQIAYLNKGLKI--TVENVEKNIIKVFCFEGGLIDYVKELNK 237 Query: 239 HKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 KK ++ I +G + ++ +++AM++N+ Y +++ + NNI DGGTH Sbjct: 238 GKKLIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQ 297 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G AL R +Y E + K + +D +EG +++SIK DP F QTK KL + Sbjct: 298 GFYDALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENK 357 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 + R ++D L +L E+P A+ I++K L + R +AR+ +R+ LD+ +L Sbjct: 358 DARIATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNL 417 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS ++ + ELF+VEG+SAGGSAK GR R QAILPLRGK++N E+ F +LS Sbjct: 418 PGKLADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLS 477 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI T+I ALGTGI FDINKL+YHKIIIMTDADVDGAHI TLLLTFF+R M LI Sbjct: 478 NKEIATMIHALGTGI-NTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIE 536 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 GF+Y+ +PPLY IT GK+++Y ++ E + + G + L Sbjct: 537 YGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWE 596 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 4/186 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +V ++A ++ + + + ++ V + Sbjct: 464 VINAEKNSFASVLSNKEIATMIHALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLL 523 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS--IGRKGISMQR 738 F + I + L I +G ++ + I + ++ +++QR Sbjct: 524 LTFFYRYMKPLIEYGFVY-LAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P+TR +L+V+I DA+ D +F+ LMG+E+EPR +FIQEN+ Sbjct: 583 YKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKY 642 Query: 799 S-ALDI 803 + +DI Sbjct: 643 ANNIDI 648 >gi|283958118|ref|ZP_06375569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|283790267|gb|EFC29084.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus A017934/97] Length = 665 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 267/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + +L ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDILKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|308173787|ref|YP_003920492.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] gi|307606651|emb|CBI43022.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] gi|328553288|gb|AEB23780.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens TA208] gi|328911925|gb|AEB63521.1| subunit B of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3] Length = 655 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 268/661 (40%), Positives = 392/661 (59%), Gaps = 23/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D GRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GDHIIVTIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G++Y+ F N G L G+ T F P Sbjct: 118 HGVGASVVNALSEWLTVTIERDGHVYKQRFENGGKPVTSLEKIGTTKKTG-TLTHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS +N+DTL RLRE +FL ++I LID+R+ + +Y+ GIEAFV+YL+ Sbjct: 177 SMFSATVYNFDTLSERLRESAFLLKGLKIELIDERND--VKEVFYYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 235 KDALC-EVVSFEGEHHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS + Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F+I + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G ++ Sbjct: 474 TIIHAIGGGVGAD-FEIEDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + + +Y + + + I + ++ Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQ 586 Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + + I+ A + + + +A L+ + E Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646 Query: 652 S 652 Sbjct: 647 E 647 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 6/263 (2%) Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 + + ++ + S + ++ ++ Sbjct: 370 TATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVE 429 Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + QAV+ V N E + ++ ++ ++ I + Sbjct: 430 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFEI 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N D ++ + F + I ++ + + K + Sbjct: 490 EDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEQGKVFIALPPLYKVSKGSGKKE 549 Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 I +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ Sbjct: 550 IIEYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I++N Sbjct: 610 VERRVTTLMGDKVEPRRKWIEKN 632 >gi|253731987|ref|ZP_04866152.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724397|gb|EES93126.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|320143913|gb|EFW35685.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 694 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 33 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 91 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 92 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 150 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 151 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 210 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 211 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 270 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 271 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 329 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 330 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 389 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 390 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 449 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 450 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 509 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 510 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 568 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 569 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 621 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 407 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 466 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 467 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 526 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 527 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 586 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 587 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 646 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 647 TTLMGDKVQPRREWIEKH 664 >gi|229544207|ref|ZP_04433266.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1] gi|229325346|gb|EEN91022.1| DNA topoisomerase IV, B subunit [Bacillus coagulans 36D1] Length = 659 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 264/662 (39%), Positives = 396/662 (59%), Gaps = 17/662 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKQNILEYNDDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNAVDEALSGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D S +V D GRG+P +H + G EVI+T LHAGGKF Q YK SGGL Sbjct: 60 GNHIIVNIHKDNSISVQDFGRGMPVGMH-KLGKPTTEVILTILHAGGKFGQGGYKTSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G +YE F + G + L T N TGT + F P Sbjct: 119 HGVGASVVNALSEWLVVTIHRDGYVYEQRFRDGGKPETTLEKT-GKTNKTGTTIHFKPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FNYDTL RLRE +FL ++I + D+R R Y+ GIEAFV YL+ Sbjct: 178 SIFSTITFNYDTLCERLRESAFLLKGLKIEITDERFG--RHDLFHYENGIEAFVQYLNEG 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + I+G + I + A ++NDG+ EN+L F NN+ KDGGTH +G ++ALTR Sbjct: 236 KEVLHP-VVFIEGETNGIEAEFAFQFNDGFSENILSFVNNVRTKDGGTHEAGAKTALTRV 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + Y K+ K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS V+ Sbjct: 295 VNDYARKTGLLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V++ LS +LEE+P + ++++K + AS R+AAR+AR+ + +K +L GKL Sbjct: 355 TIVSEHLSYFLEENPDTSNLLIRKAIKASQAREAARKAREEARSGKKRKKSETTLSGKLT 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P+++EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI Sbjct: 415 PAQSRNPQRNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F++ + Y K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 475 TIIYTIGAGVG-PEFNLEDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVY 533 Query: 536 IIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY +++ + ++Y E+ L++ + ++ + + + + Sbjct: 534 IALPPLYKVSKGTGRKEIVEYAWTEKELDETIKKVGRGYILQRYKGLGEMNADQLWETTM 593 Query: 592 D-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + + + ++ D ++ + + N L+ E Sbjct: 594 NPETRTLIRVRIDDAARAERRVTTLMGDKVEPRRQWIESHVEFGLEDDTNILDNENLMIE 653 Query: 651 KS 652 + Sbjct: 654 EG 655 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 105/264 (39%), Gaps = 8/264 (3%) Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 I + ++ + S + ++ ++ Sbjct: 371 TSNLLIRKAIKASQAREAARKAREEARSGKKRKKSETTLSGKLTPAQSRNPQRNELYLVE 430 Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + QAV+ V N E + ++ ++ + I ++ Sbjct: 431 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIYTIGAGVGPEFNL 490 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N D ++ + F + I + ++ + + + + Sbjct: 491 EDVNYDKVIIMTDADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKVSKGTGRKE 550 Query: 716 IT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 I L +TI +GR G +QRYKGLGEMNA QLWETT+NP+TR+L+RV+I DA+ Sbjct: 551 IVEYAWTEKELDETIKKVGR-GYILQRYKGLGEMNADQLWETTMNPETRTLIRVRIDDAA 609 Query: 772 QADDLFSRLMGDEVEPRREFIQEN 795 +A+ + LMGD+VEPRR++I+ + Sbjct: 610 RAERRVTTLMGDKVEPRRQWIESH 633 >gi|285817032|gb|ADC37519.1| Topoisomerase IV subunit B [Staphylococcus aureus 04-02981] gi|312829750|emb|CBX34592.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 665 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 264/601 (43%), Positives = 376/601 (62%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+G+IY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++Y +E L ++ + + S+ + Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNSEQLWETTM 595 Query: 592 D 592 + Sbjct: 596 N 596 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN+ QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNSEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|209559258|ref|YP_002285730.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes NZ131] gi|209540459|gb|ACI61035.1| Topoisomerase IV subunit B [Streptococcus pyogenes NZ131] Length = 649 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 274/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 VES V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED I G ++ N L Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712 N D ++ + + + +F +Y R L L + G + Sbjct: 498 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 555 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 KI L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++ Sbjct: 556 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 615 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMGD+ PRR++I++N Sbjct: 616 AERRVSVLMGDKAAPRRQWIEDN 638 >gi|331001824|ref|ZP_08325346.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412798|gb|EGG92181.1| hypothetical protein HMPREF0491_00208 [Lachnospiraceae oral taxon 107 str. F0167] Length = 637 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 256/619 (41%), Positives = 371/619 (59%), Gaps = 14/619 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y+A SI +L+GL+AV+ RP MYIG G GL+H+IYE++DN+IDE L GY I VT Sbjct: 2 QDYNAGSITVLEGLEAVRVRPGMYIGGV-GVKGLNHLIYEIMDNSIDEHLAGYCKNIWVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGSCTV D+GRGIP ++H++ GISA V+++ LHAGGKF+ SYK SGGLHGVG SV Sbjct: 61 LNADGSCTVKDDGRGIPVEMHQK-GISAERVVLSTLHAGGKFDNASYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDIF 182 VNALS +L ++I R+G I+ + GI L G ++GTE+TFLP + IF Sbjct: 120 VNALSDFLDIKISRDGYIHHDRYEKGIPVIELKKGLLPTIGKTK-ESGTEITFLPDNTIF 178 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 V F + L+ R+ E ++LN + + I+ R E E T + GI A+V L++ K+ Sbjct: 179 EVTKFKAEWLKSRMHESAYLNPGLMLHFINLRENEYEERTFYEPDGIVAYVKELNKGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +G D I +++A+++ D + EN+L F NNI ++GGTH++G ++ T I + Sbjct: 239 MHAPISY-KGICDGIDVEIAIQFVDAFEENILGFCNNIFTQEGGTHIAGFKTKFTGLINT 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y K + G D R G T+++SIK P+P F QTK KL S++ V + D Sbjct: 298 YARDLGVLKDKDSNFTGADTRNGMTAIISIKHPNPMFEGQTKTKLASADATRAVLTVTGD 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ + + + K I+ ++ +R A RA+ K S GKLA+C +DP Sbjct: 358 ELTRFFDRNVDVIKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFES-NGKLANCESKDP 416 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I G Sbjct: 417 SKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINTFG 476 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G + + FDI+KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI P Sbjct: 477 CGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMP 536 Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PL+ + + Y+ DE++LEDY + ++ + + ++ +D ++ Sbjct: 537 PLFKVVPKRGEGIYLYDEKALEDYKKKHKDNFTLQRYKGLGEMDAEQLWETTLDPERRVL 596 Query: 599 KLIKDFYPNHDKTFIEQAV 617 K ++ E + Sbjct: 597 KKVEIEDARLASEVTELLM 615 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 6/187 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI----AEKSEKSWHGSINNSDILVKRIARGVQEQFV 676 + N E V +++ +N +E + S D ++ V + Sbjct: 451 ILNVEKASIDKVLANAEIKTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHI 510 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKGIS 735 F + + I+ + + ++ G+ I + L+ + + Sbjct: 511 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVVPKRGEGIYLYD-EKALEDYKKKHKDNFT 569 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETTL+P+ R L +V+I DA A ++ LMG +V PRR FI E+ Sbjct: 570 LQRYKGLGEMDAEQLWETTLDPERRVLKKVEIEDARLASEVTELLMGSDVAPRRNFIHEH 629 Query: 796 SLPSALD 802 + + +D Sbjct: 630 AREAVID 636 >gi|256843827|ref|ZP_05549314.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN] gi|256613732|gb|EEU18934.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN] Length = 654 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 274/611 (44%), Positives = 395/611 (64%), Gaps = 7/611 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 16 EKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 74 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGKF YKVSGGLHGV Sbjct: 75 IEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 134 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y + F +G + + + G+ ++ GT V F P DIF Sbjct: 135 GASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLDEHGTIVHFYPDPDIF 194 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+ EL+FLN + ++ DKR ++GGI+ +V++L++ ++ Sbjct: 195 TETIVFDDKILKNRIHELAFLNKGLTLTFTDKRKDTAETDVYKFEGGIKEYVAFLNKGQE 254 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++ + + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 255 VLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 314 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y KS K ++ G+D REG T+++S+K P P+F QTK KL +S+ R+ V+ + Sbjct: 315 DYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTKLGNSDARTAVDKAFS 374 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 375 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 434 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 435 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 494 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI KPPL Sbjct: 495 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIDKGYVYIAKPPL 553 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + G + L ++ Sbjct: 554 YQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPEQLWET--TMNPENRR 611 Query: 601 IKDFYPNHDKT 611 + P + K Sbjct: 612 LDRVSPEYAKD 622 Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|21282970|ref|NP_646058.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MW2] gi|57650358|ref|YP_186242.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus COL] gi|87160112|ref|YP_493947.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|221141851|ref|ZP_03566344.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451752|ref|ZP_05699776.1| topoisomerase IV subunit B [Staphylococcus aureus A5948] gi|262049827|ref|ZP_06022690.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30] gi|262052164|ref|ZP_06024371.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3] gi|282920622|ref|ZP_06328343.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765] gi|284024355|ref|ZP_06378753.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 132] gi|297207992|ref|ZP_06924423.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912076|ref|ZP_07129519.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH70] gi|304381069|ref|ZP_07363723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204409|dbj|BAB95106.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MW2] gi|57284544|gb|AAW36638.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus COL] gi|87126086|gb|ABD20600.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|257860583|gb|EEV83407.1| topoisomerase IV subunit B [Staphylococcus aureus A5948] gi|259159908|gb|EEW44945.1| DNA topoisomerase IV subunit B [Staphylococcus aureus 930918-3] gi|259162051|gb|EEW46630.1| DNA topoisomerase IV subunit B [Staphylococcus aureus D30] gi|269940852|emb|CBI49234.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TW20] gi|282594284|gb|EFB99271.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9765] gi|296887235|gb|EFH26137.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886322|gb|EFK81524.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH70] gi|302751185|gb|ADL65362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340378|gb|EFM06318.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196388|gb|EFU26740.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS01] gi|329314032|gb|AEB88445.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus T0131] gi|329730909|gb|EGG67285.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21189] Length = 665 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|315651450|ref|ZP_07904473.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] gi|315486270|gb|EFU76629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium saburreum DSM 3986] Length = 637 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 257/619 (41%), Positives = 369/619 (59%), Gaps = 14/619 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y+A SI +L+GL+AV+ RP MYIG G GL+H+IYE++DN+IDE L GY I VT Sbjct: 2 QDYNAGSITVLEGLEAVRVRPGMYIGGV-GVKGLNHLIYEIMDNSIDEHLAGYCKNIWVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 LN DGSCTV D+GRGIP ++H++ G+SA V+++ LHAGGKF+ +SYK SGGLHGVG SV Sbjct: 61 LNADGSCTVRDDGRGIPVEMHQK-GVSAERVVLSTLHAGGKFDNESYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----TGSAGNDTGTEVTFLPSSDIF 182 VNALSS+L ++I R I+ + G+ L G ++GTE+TFLP IF Sbjct: 120 VNALSSFLDIKIYRGRYIHHDRYERGVPVIELKKGLLPTVGKTK-ESGTEITFLPDDTIF 178 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 V F D L+ R+ E ++LN + + I+KR E E GI A+V L++ K+ Sbjct: 179 EVTKFRADWLKSRMHESAYLNPGLILHFINKRENEYEEKIYHEPEGIVAYVKELNKGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + +G DNI ++ A+++ D + EN+L F NNI ++GGTH+ G ++ T I + Sbjct: 239 MHAPISY-KGVCDNIEVEAAIQFVDAFEENILGFCNNIFTQEGGTHIVGFKTKFTGLINT 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y + K + G D R G T+++SIK PDP F QTK KL S++ V + D Sbjct: 298 YARELGILKDKDSNFTGADTRNGMTAIVSIKHPDPMFEGQTKTKLASADATRAVLTVTGD 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ + + + K I+ ++ +R A RA+ K S GKLA+C +DP Sbjct: 358 ELTRYFDRNVDVVKSIISCAEKSAKIRKAEERAKTNMLTKSKFSFES-NGKLANCESKDP 416 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAK R+R QAILP+RGKILNVE+A DK+L++ EI T+I G Sbjct: 417 SKCEIFIVEGDSAGGSAKTARNRNFQAILPIRGKILNVEKASIDKVLANAEIKTMINTFG 476 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G + + FDI+KLRY KII+MTDADVDG+HI TLLLTF +R MP LI++G +YI P Sbjct: 477 CGFSEGYGNDFDISKLRYDKIILMTDADVDGSHIDTLLLTFLYRFMPELIYDGHVYIAMP 536 Query: 540 PLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 PL+ + + Y+ DE++LEDY + ++ + + ++ +D ++ Sbjct: 537 PLFKVVPKRGEGVYLYDEKALEDYRKKHKDNFTLQRYKGLGEMDAEQLWETTLDPERRVL 596 Query: 599 KLIKDFYPNHDKTFIEQAV 617 K ++ E + Sbjct: 597 KKVEIEDARLASEITELLM 615 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 6/187 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFI----AEKSEKSWHGSINNSDILVKRIARGVQEQFV 676 + N E V +++ +N +E + S D ++ V + Sbjct: 451 ILNVEKASIDKVLANAEIKTMINTFGCGFSEGYGNDFDISKLRYDKIILMTDADVDGSHI 510 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSLLDTIFSIGRKGIS 735 F + + I+ + + ++ G+ + + L+ + + Sbjct: 511 DTLLLTFLYRFMPELIYDGHVYIAMPPLFKVVPKRGEGVYLYD-EKALEDYRKKHKDNFT 569 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETTL+P+ R L +V+I DA A ++ LMG +V PRR FI E+ Sbjct: 570 LQRYKGLGEMDAEQLWETTLDPERRVLKKVEIEDARLASEITELLMGSDVTPRRNFIHEH 629 Query: 796 SLPSALD 802 + + +D Sbjct: 630 AREAVID 636 >gi|269793364|ref|YP_003312819.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542] gi|269095549|gb|ACZ19985.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542] Length = 683 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 271/605 (44%), Positives = 377/605 (62%), Gaps = 28/605 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + Y A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY D I Sbjct: 19 TVDGGYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYCDHI 77 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL DG V DNGRGIP D+H EG EV+MT LHAGGKF Y VSGGLHGVG Sbjct: 78 EVTLLDDGGVRVVDNGRGIPVDIHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVG 137 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 +SVVNALS+ ++ ++R+G + SF + G L G A + TGT+ TF IF Sbjct: 138 ISVVNALSTRVETVVRRQGFTWHQSFADGGKPVGELRK-GDATDQTGTQQTFWADGSIFE 196 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------------EPREITMF 224 ++++TL+ R ++++FLN +QISL D+RS + R + Sbjct: 197 TTRYDFETLRARFQQMAFLNKGLQISLTDERSDVAETDDEVTGAEDGEGAGAQARTVVYK 256 Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y G+ +V++L+ K + + + I + IS+++AM+W + Y E+V + N I Sbjct: 257 YDRGLLDYVAHLNSAKRVEIVHEDIIAFESEDTERRISLEVAMQWTNAYSESVHTYANTI 316 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+A+T + Y K+ ++ GDD REG T+V+SIK+ +P+F Sbjct: 317 STTEGGTHEEGFRAAMTSLVNRYARAKGIIKEKDDNLTGDDIREGLTAVISIKLGEPQFE 376 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL ++E ++ V+S VN+ L WL+ HP+EAK I++K + AS R AAR+AR+ TR Sbjct: 377 GQTKTKLGNTEAKTFVQSVVNEQLGDWLDSHPVEAKDIIRKAIQASQARLAARKAREATR 436 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RKG+L+ +PGKL DC P++ E+++VEGDSAGGSA +GR+ QAILP+RGKILNV Sbjct: 437 RKGLLESGGMPGKLRDCQSNKPEECEVYIVEGDSAGGSAVRGRNPRTQAILPIRGKILNV 496 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERAR DK L +QE+ LITA GTGIG+D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 497 ERARLDKALGNQEVQALITAFGTGIGED-FDIAKLRYHKIVLMADADVDGQHICTLLLTL 555 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M LI +G +Y+ +PPLY I + YV + ++Y+ + + + Sbjct: 556 LFRYMRPLIEHGMVYLAQPPLYRIKWSNAEHDYVYSDRERDEYIAAGLANGKRIPKDNGI 615 Query: 580 GVISK 584 Sbjct: 616 QRYKG 620 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ S+LW+TT++PD R+LL+V + DA+ AD++FS LMG++VE RR FIQ N Sbjct: 615 IQRYKGLGEMDYSELWDTTMDPDHRTLLQVTLDDAAAADEIFSVLMGEDVESRRNFIQRN 674 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 675 AKDVRFLDI 683 >gi|253733399|ref|ZP_04867564.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TCH130] gi|253728667|gb|EES97396.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus TCH130] Length = 665 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEYYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|154686223|ref|YP_001421384.1| DNA topoisomerase IV subunit B [Bacillus amyloliquefaciens FZB42] gi|154352074|gb|ABS74153.1| ParE [Bacillus amyloliquefaciens FZB42] Length = 655 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 268/661 (40%), Positives = 393/661 (59%), Gaps = 23/661 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MARK-QQFDYNEDAIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSVDEVLAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT++ D S +V D GRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GDHIIVTIHKDNSISVQDRGRGMPTGMH-KLGKPTPEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I+R+G +Y+ F N G L G+ T F P Sbjct: 118 HGVGASVVNALSEWLTVTIERDGYVYKQRFENGGKPVTSLEKIGTTKKTG-TLTHFKPDP 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS +N+DTL RLRE +FL ++I LID+R+ + +Y+ GIEAFV+YL+ Sbjct: 177 SMFSATVYNFDTLSERLRESAFLLKGLKIELIDERNG--VKEVFYYENGIEAFVAYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G +I +D A ++NDGY EN+L F NN+ KDGGTH SG ++A+TR Sbjct: 235 KDALC-EVVSFEGEHHDIEVDFAFQFNDGYSENMLSFVNNVRTKDGGTHESGAKTAMTRA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++++S+++P+ +F QTK KL +SE RS + Sbjct: 294 FNEYARKVALLKEKDKNLEGADIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAAD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L+ +LEE+ A ++VKK + AS R+AAR+AR+ + +K A+L GKL Sbjct: 354 AVISENLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+P K+EL+LVEGDSAGGSAKQGR R+ QA+LPLRGK++N E+A+ + ++EI Sbjct: 414 PAGSRNPAKNELYLVEGDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I A+G G+G D F+I+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI +G ++ Sbjct: 474 TIIHAIGGGVGAD-FEIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVF 532 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I PPLY +++G + + +Y + + + I + ++ Sbjct: 533 IALPPLYKVSKGSGKKEII------EYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQ 586 Query: 596 KIDKLIKDFYPNHDKTFIEQAV----ISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + + I+ A + + + +A L+ + E Sbjct: 587 LWETTMNPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIEKNVAFGLDEESNILEN 646 Query: 652 S 652 Sbjct: 647 E 647 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 102/263 (38%), Gaps = 6/263 (2%) Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 + + ++ + S + ++ ++ Sbjct: 370 TATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVE 429 Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + QAV+ V N E + ++ ++ ++ I + Sbjct: 430 GDSAGGSAKQGRDRKFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFEI 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N D ++ + F + I ++ + + K + Sbjct: 490 DDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKE 549 Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 I +D + KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ Sbjct: 550 IIEYAWSDEEMDGVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAAR 609 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I++N Sbjct: 610 VERRVTTLMGDKVEPRRKWIEKN 632 >gi|313633453|gb|EFS00279.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL N1-067] Length = 655 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 263/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GLDAV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + + R+G YE F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL RLRE +FL + I LID+R E + ++ G++ FV Y++ K Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRVFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A RDAAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + +D ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREARDAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + N D +V + F + + + ++ + + K Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630 >gi|307331912|ref|ZP_07611008.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113] gi|306882430|gb|EFN13520.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113] Length = 676 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 282/640 (44%), Positives = 396/640 (61%), Gaps = 14/640 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ + SYDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+A Sbjct: 25 SEALAPPSYDASAITVLEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHA 83 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 84 DSIEVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 143 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS + + +K +G + + G PL A +TGT VTF D+ Sbjct: 144 GVGVSVVNALSSKVSVEVKTDGYRWTQDYKTGAPTAPLAR-NEATEETGTTVTFWADPDV 202 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235 F +++++TL R +E++FLN + ISL D+R +P + +Y+GGI FV+Y Sbjct: 203 FETTEYSFETLARRFQEMAFLNKGLSISLKDEREAHVDEEGKPLSVKYYYEGGIVDFVTY 262 Query: 236 -LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 R + + + I + +S+++AM+WN Y E V F N I +GGTH G Sbjct: 263 LNSRKGELVHPTVIGFEAEDKERLLSLEIAMQWNTQYTEGVYSFANTIHTHEGGTHEEGF 322 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALT I Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++E Sbjct: 323 RAALTYLINKYARDKKLLRERDDNLTGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEA 382 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 ++ V+ VN+ L+ WL+ +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ ASLPG Sbjct: 383 KTFVQKVVNEHLADWLDRYPNEAADIVRKGIQAATARVAARKARDLTRRKGLLETASLPG 442 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L + Sbjct: 443 KLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARVDKILQNN 502 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 E+ LI+A GTG+ +D FDI+KLRYHKII+M DADVDG HI TLLLTF FR M L+ G Sbjct: 503 EVQALISAFGTGVHED-FDIDKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVEAG 561 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +++ +PPLY I G+ + D LI ++ + DS L Sbjct: 562 HVFLSRPPLYKIKWGRDDFEYAYSDRERDALIQAGRAQGKRIRDDSVQRFKG--LGEMNA 619 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L+I + D T + A +F+ +++ Sbjct: 620 EELRITTMDPDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 659 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + GR + S+QR+KGLGEMNA +L TT++PD R L +V + DA+QADDLF Sbjct: 590 DALIQAGRAQGKRIRDDSVQRFKGLGEMNAEELRITTMDPDHRVLGQVTLDDAAQADDLF 649 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676 >gi|119963753|ref|YP_945839.1| DNA gyrase subunit B [Arthrobacter aurescens TC1] gi|119950612|gb|ABM09523.1| DNA gyrase, B subunit [Arthrobacter aurescens TC1] Length = 692 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 268/603 (44%), Positives = 374/603 (62%), Gaps = 30/603 (4%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY I VTL Sbjct: 30 EYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCSHIEVTL 88 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V D+GRGIP D+H EG EV+MT LHAGGKF Y VSGGLHGVG+SVV Sbjct: 89 RADGGVRVVDDGRGIPVDIHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISVV 148 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 NALS + ++R+G+++ M+F + G L V G A + TGT TF P IF +F Sbjct: 149 NALSRRVDTEVRRQGHVWRMTFADGGKPQGEL-VKGEATDVTGTSQTFYPDGTIFESTEF 207 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------EPREITMFYK 226 +++TL+ R ++++FLN ++I+L D+R E R + Y Sbjct: 208 DFETLRARFQQMAFLNKGLRITLTDERPVNRDGDDDLDLDAVATEGEVAAEHRTVVYQYP 267 Query: 227 GGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 G+ +V +L+ KK + I + +I++++AM+W Y E+V + N I Sbjct: 268 DGLLDYVKHLNSSKKVEIVHEDVIAFETEDTERHIAVEVAMQWTTAYSESVHTYANTINT 327 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH G R+A+T I Y + K+ + ++ GDD REG T+V+S+K+ +P+F Q Sbjct: 328 HEGGTHEEGFRAAMTSLINRYAREKSIIKEKEDNLTGDDIREGLTAVISVKLSEPQFEGQ 387 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL +SEV+ V+ V D L WLE +P A+ +++K + A+ R AAR+ARD RRK Sbjct: 388 TKTKLGNSEVKGFVQRVVTDQLGDWLERNPGPARDVIRKAISAAQARMAARKARDNARRK 447 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 L+ +PGKL+DCS +DP + E++LVEGDSAGGSAK+GR+ E QAILPLRGKILNVER Sbjct: 448 SPLESFGMPGKLSDCSSKDPSRCEVYLVEGDSAGGSAKRGRNPETQAILPLRGKILNVER 507 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK L + E+ ++ITA GTGIG+D FDI KLRYHKI++M DADVDG HI TLL+T F Sbjct: 508 ARLDKALGNAEVQSMITAFGTGIGED-FDIAKLRYHKIVLMADADVDGQHITTLLMTLLF 566 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGV 581 R M LI NG++Y+ +PPLY I + YV + ++ + + + + Sbjct: 567 RYMRPLIENGYVYLAQPPLYRIKWSNAAHDYVYSDRERDETIRKGAAMNKRLPKDNGIQR 626 Query: 582 ISK 584 Sbjct: 627 YKG 629 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA AD FS LMG++VE RR FIQ+N Sbjct: 624 IQRYKGLGEMDYTELWDTTMDPDRRTLLQVTMDDALAADQTFSVLMGEDVESRRNFIQQN 683 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 684 AKDVRFLDI 692 >gi|323339872|ref|ZP_08080141.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis ATCC 25644] gi|323092745|gb|EFZ35348.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus ruminis ATCC 25644] Length = 678 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 261/597 (43%), Positives = 361/597 (60%), Gaps = 15/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +Y DSIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ I Sbjct: 1 MGTENYSDDSIQVLKGLEAVRKRPGMYIGSTDA-KGLHHLVYEIVDNAVDEALSGFGKEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV DNGRG+P +H GI EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 60 DVTIHKDDSITVVDNGRGLPVGIHA-MGIPTVEVIYTVLHAGGKFGQGGYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS L + R+G YE F++ G L G +GT VTF P IFS Sbjct: 119 ASVVNALSEKLTVNTVRDGIEYEEDFVDGGHPVGTLRKIGKTKKQSGTTVTFKPDKKIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FNYDTL RLRE +FL V+I L D+R+ + + ++ GI+ FVS +K Sbjct: 179 TTHFNYDTLAERLRESAFLLKGVKIVLTDERNDD--QDVFLFENGIQEFVS-YLNEEKDT 235 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + + +G +D I +++A ++NDGY E ++ F NN+ KDGGTH G++SA T+ Y Sbjct: 236 LGNVMYFEGKKDGIEVEVAAQYNDGYSETIMSFVNNVRTKDGGTHEVGMKSAWTKAFNEY 295 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K +++ G D REG V+S+++P+ +F QTK KL + E R+ V+ VN Sbjct: 296 ARKVDLIKSKDKNLEGSDVREGLACVVSVRIPEELLQFEGQTKGKLGTPEARTAVDGIVN 355 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 + L +L E+ AK +V+K L A R+AAR+ARD +K L GKL Sbjct: 356 EQLGYYLMENGDFAKELVRKSLKAREAREAARKARDESRNGKKRHKKERLLSGKLTPAQS 415 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ ++ ++EI T+I Sbjct: 416 KNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTMIY 475 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F+I Y KIIIMTDAD DGAHI+TLLLTFF++ M +I+ G +YI P Sbjct: 476 TIGAGVG-TEFNIEDANYDKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALP 534 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY + + ++Y + L+ ++ F + + ++ Sbjct: 535 PLYKLQKTVKKKTVVKYAWTDAELKTSEKEIGKGFTLQRFKGLGEMNADQLWETTMN 591 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + S + ++ ++ Sbjct: 373 VRKSLKAREAREAARKARDESRNGKKRHKKERLLSGKLTPAQSKNAKKNELFLVEGDSAG 432 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 433 GSAKQGRDRKFQAILPLRGKVLNTEKAKLQDIVKNEEINTMIYTIGAGVGTEFNIEDANY 492 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG-- 718 D ++ + F + I + R+ + L K + Sbjct: 493 DKIIIMTDADTDGAHIQTLLLTFFYKYMRPMINAGRVYIALPPLYKLQKTVKKKTVVKYA 552 Query: 719 PCSL-LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L T KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI D + A+ Sbjct: 553 WTDAELKTSEKEIGKGFTLQRFKGLGEMNADQLWETTMNPETRTLVRVKIEDDALAEKRV 612 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD VEPRR++I++N Sbjct: 613 STLMGDRVEPRRKWIEKN 630 >gi|325677512|ref|ZP_08157176.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi ATCC 33707] gi|111185878|dbj|BAF02676.1| DNA gyrase subunit B [Rhodococcus equi] gi|325551759|gb|EGD21457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi ATCC 33707] Length = 678 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 257/582 (44%), Positives = 362/582 (62%), Gaps = 39/582 (6%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + VT+ DG V D+GRGIP +H G EV+MT+LHAGGKF+ +Y VSG Sbjct: 60 GYASKVEVTMLEDGGIQVVDDGRGIPVAMHAS-GAPTVEVVMTQLHAGGKFDSDAYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVNALS+ +++ I +G + ++ + PL V G +TGT V F Sbjct: 119 GLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETGTTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------------- 222 +IF +N++T+ RL+E++FLN + I+L D+R E Sbjct: 177 PEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTDDVVPVTAEAPKTATET 236 Query: 223 ----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 Y GG+E +V +++R K+ + S + +++AM+WN Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHELEIAMQWN 296 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G R+ALT + Y + K + GDD REG Sbjct: 297 SGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIREGL 356 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +++S+K+ +P+F QTK KL ++EV+S V+ N+ ++ W E +P +AK IV K + ++ Sbjct: 357 AAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAVSSA 416 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK DI LPGKLADC DP K E+++VEGDSAGGSAK GR Sbjct: 417 QARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRDSM 476 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI D FDI+KLRYHKI++M DA Sbjct: 477 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGI-HDEFDISKLRYHKIVLMADA 535 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 DVDG HI TLLLT FR M L+ G +Y+ +PPLY + K Sbjct: 536 DVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQK 577 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEMNA +LWETT++P R L +V + DA+ AD+LF Sbjct: 593 LLEAGLAAGKK-INKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELF 651 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 652 SVLMGEDVEARRSFITRNAKDVRFLDV 678 >gi|317509459|ref|ZP_07967077.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974] gi|316252288|gb|EFV11740.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974] Length = 678 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 268/605 (44%), Positives = 372/605 (61%), Gaps = 33/605 (5%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N + S+Y A SI IL+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE++ GYA Sbjct: 10 KNAEKSTYGASSITILEGLEAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGYAT 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + VTL DG V D+GRGIP H G EV++T LHAGGKF+ SY VSGGLHG Sbjct: 69 RVDVTLLADGGIEVVDDGRGIPVAPHAS-GPPTVEVVLTVLHAGGKFDSDSYAVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS L++ I +G+ + ++ N PL V G+A TGT V F IF Sbjct: 128 VGISVVNALSYKLEVEIDVDGHHWTQAYDNAKP-GPL-VKGAAVKRTGTTVRFWADPKIF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR----------------------- 219 +++DT+ RL+E++FLN + I+L D R + Sbjct: 186 ETTRYDFDTIARRLQEMAFLNKGLIITLTDLREGQIDASDEGEGVDTAELVRSEGDDEAK 245 Query: 220 -----EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274 Y GG+ +V++++R K + S + +G + +++AM+WN GY E+V Sbjct: 246 APAVKRREYHYPGGLHDYVAHINRTKTAIHTSIVSFEGKGEGHEVEIAMQWNSGYTESVY 305 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 F N I +GGTH G R+ALT + Y K+ +++ GDD REG ++V+S+K+ Sbjct: 306 TFANTINTHEGGTHEEGFRAALTSTVNKYARDKKILKEKDKNLSGDDVREGLSAVISVKL 365 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 +P+F QTK KL ++E+RS V+ N+ L+ W E +P EAK+IV K A+ RDAA+ Sbjct: 366 SEPQFEGQTKTKLGNTEIRSFVQKICNEELAHWFEANPSEAKVIVSKAQQAAQARDAAQN 425 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 AR L RRK DI LPGKLADC +DP KSE+++VEGDSAGGSAK GR+ E QAILP+R Sbjct: 426 ARALVRRKSATDIGGLPGKLADCRSKDPSKSEVYIVEGDSAGGSAKSGRNSEFQAILPIR 485 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GKI+NVE+AR D++L + E+ ++ITA GTGI D FD+ KLRYHKI++M DADVDG HI Sbjct: 486 GKIINVEKARIDRVLKNTEVQSIITAFGTGI-HDEFDLAKLRYHKIVLMADADVDGQHIS 544 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574 TLLLT FR M L+ +G +Y+ PPLY + ++ + D L++ L ++ Sbjct: 545 TLLLTLLFRFMRPLVEHGHVYLAAPPLYKLKWQRAEPEYAYSDRERDSLLSIGLGSGKKI 604 Query: 575 FCDSK 579 D Sbjct: 605 NKDDG 609 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA +LWETT++PDTR+L V + DA+ AD+LFS LMG++V RR FI N Sbjct: 610 IQRYKGLGEMNAKELWETTMDPDTRTLRLVTMDDAAAADELFSILMGEDVPARRGFIARN 669 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 670 AKDVRFLDV 678 >gi|300811991|ref|ZP_07092447.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497017|gb|EFK32083.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 653 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 283/612 (46%), Positives = 403/612 (65%), Gaps = 7/612 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A I Sbjct: 17 EADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFATKIE 75 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+N D S TV D+GRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHGVG Sbjct: 76 VTVNEDNSVTVQDDGRGIPVDIEKKTGRPAVETVYTVLHAGGKFGGGGYKVSGGLHGVGA 135 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIFSV 184 SVVNALS+ L + + R+G Y ++F +G + L G+ + GT V F P +IF+ Sbjct: 136 SVVNALSTKLNVTVMRDGKKYHIAFDHGRVVEELKEVGTVPLTEHGTIVHFWPDPNIFTE 195 Query: 185 QDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 D L++R+REL+FLN ++++ DKR ++GGI+ +VS+L+R ++ L Sbjct: 196 TTVFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYHFEGGIKEYVSFLNRGQEVL 255 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 PI ++G + I +++++++ GY ++ F NNI +GG H +G ++ALTR + Y Sbjct: 256 FDEPIYVEGKYEGIDVEVSLQYTTGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVNDY 315 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG 363 K+ K++ ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ ++ Sbjct: 316 AHKAKILKENDDNLSGEDIREGMTAVISVKHPNPQFEGQTKTKLGNSDARTAVDRAFSET 375 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPK 423 S +L E+P A+ IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + DP Sbjct: 376 FSTFLMENPQVARKIVEKGQLAERARVAAKRAREVTRKKSGLEIANLPGKLADNTSNDPN 435 Query: 424 KSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGT 483 SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI TL+TALGT Sbjct: 436 ISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTLVTALGT 495 Query: 484 GIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYG 543 G G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPLY Sbjct: 496 GFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPMIDKGYVYIARPPLYQ 554 Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + +GK ++Y+ +E L DYL + S + I G + L D ++ + Sbjct: 555 VRQGKLIKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDAEQLWETTMDPE--NRRLD 612 Query: 603 DFYPNHDKTFIE 614 P + K E Sbjct: 613 RVDPGYAKDADE 624 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT++P+ R L RV A AD++F LMG+EV PRR+FI++N Sbjct: 585 VQRYKGLGEMDAEQLWETTMDPENRRLDRVDPGYAKDADEVFEMLMGNEVGPRRKFIEDN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AQYVENLD 652 >gi|258424795|ref|ZP_05687669.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635] gi|282916615|ref|ZP_06324373.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283770421|ref|ZP_06343313.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus H19] gi|257844959|gb|EEV68999.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9635] gi|282319102|gb|EFB49454.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus D139] gi|283460568|gb|EFC07658.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus H19] Length = 665 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NPDTR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|258449316|ref|ZP_05697419.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224] gi|257857304|gb|EEV80202.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6224] Length = 665 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 265/598 (44%), Positives = 373/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+G+IY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L+ RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLRERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|227494193|ref|ZP_03924509.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831927|gb|EEH64310.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 671 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 280/658 (42%), Positives = 380/658 (57%), Gaps = 32/658 (4%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M++ SSY A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+ Sbjct: 1 MAEEQTAGTDTSSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY D I VT+ DG+ TV DNGRGIP D+H EG EV+MT LHAGGKF Y V Sbjct: 60 LAGYCDHIEVTIREDGAVTVVDNGRGIPVDIHPTEGKPTVEVVMTILHAGGKFGGGGYAV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG+SVVNALS + I+R+G ++ SF N G L V G +TGT TF Sbjct: 120 SGGLHGVGISVVNALSKRVDTEIRRQGYVWRQSFGNGGKPLTEL-VRGEETEETGTSQTF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-------------------SP 216 P +IF +F+++TL+ R ++++FLN ++ISL D+R Sbjct: 179 YPDPEIFETVEFSFETLRKRFQQMAFLNKGLRISLTDERATAVDDGDEIAGEDTDENAVK 238 Query: 217 EPREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVL 274 P +T Y G+ +V +++ K + + I + + +S+++AM+W Y E+V Sbjct: 239 VPLTVTYQYDQGLYDYVKFINSTKKSETIHDDIIAFEHDAEALSVEIAMQWTKAYSESVF 298 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 + N I +GGTH G R+ALT I Y + K ++ GDD REG T+V+S+K+ Sbjct: 299 TYANTISTTEGGTHEEGFRAALTSVINKYAREKGILKDKHDNLSGDDIREGLTAVISVKL 358 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 +P+F QTK KL ++E R+ V+ V WL+ HP EAK ++ K L A R AAR+ Sbjct: 359 TEPQFEGQTKTKLGNTEARTFVQQQVYSQFGDWLDSHPAEAKAVIIKALSAQEARLAARK 418 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 AR+ TRRKGVL+ AS+PGKL DCS RD K E+++VEGDSAGGSA GR E+QAILPLR Sbjct: 419 AREATRRKGVLESASMPGKLRDCSSRDAAKCEIYIVEGDSAGGSAVMGRDPEHQAILPLR 478 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GKILNVE+AR D+ L SQEI LI+A GTGIG D FDI+KLRY KI++M DADVDG HI Sbjct: 479 GKILNVEKARLDRALDSQEIRALISAFGTGIG-DEFDISKLRYGKIVLMADADVDGQHIT 537 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIE 573 TLL+T FR M ++ G +Y+ +PPLY + ++V + + L Sbjct: 538 TLLMTLLFRYMRPIVEAGHVYLAQPPLYRLKWTNAQHEFVYSDAERDAALAKGKAEGRRL 597 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 N + K E A +F+ ++ Sbjct: 598 PKEGGVQRYKGLGEMNAQELWETTMDPSKRTLKKI--EIAEAATADEIFSILMGDDVE 653 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 61/88 (69%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 + L + GR+ G +QRYKGLGEMNA +LWETT++P R+L +++I +A+ AD++ Sbjct: 585 AALAKGKAEGRRLPKEG-GVQRYKGLGEMNAQELWETTMDPSKRTLKKIEIAEAATADEI 643 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+VE RR FIQ N+ LD+ Sbjct: 644 FSILMGDDVESRRSFIQRNAQDVRFLDV 671 >gi|70704828|gb|AAZ06861.1| DNA gyrase subunit B [Acholeplasma morum] Length = 535 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 263/531 (49%), Positives = 364/531 (68%), Gaps = 4/531 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 GE GLHH+++E++DN+IDES+ GYA IT+ + D V+D+GRGIP D H + G SA Sbjct: 1 GERGLHHLVWEIVDNSIDESMVGYASEITLEILPDNIIKVTDDGRGIPVDKHAKTGKSAV 60 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 E I+T LHAGGKF+ KSYKVSGGLHGVG SVVNALSSW ++ I R G +Y+ + GI Sbjct: 61 ETILTVLHAGGKFDGKSYKVSGGLHGVGASVVNALSSWFRVTISRNGLLYQQEYSRGIPQ 120 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215 L G + + TGT + F S+IF+ F+++TL++R++EL+FLN ++IS+ D R Sbjct: 121 YELKEIGKSSH-TGTTIEFKADSEIFTEAQVFDFETLRNRIQELAFLNRHIKISITDSRG 179 Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 EP T Y+GGIE +V +L+ K + + DNI++++A+++ND Y N+ Sbjct: 180 KEPVSFTYQYEGGIEEYVKFLNHGKSVINPQIVYSFKEVDNITVEIALQYNDSYATNIYS 239 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 FTNNI +GG H G + AL+R + +Y + + K + IG+D REG T+++SIK P Sbjct: 240 FTNNIHTHEGGMHEDGFKLALSRVLGNYAKDN-SLLKKDEAFIGEDTREGLTAIVSIKHP 298 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL + EVR +V +GL +L E+P AK I+ KV+ AS R AAR+A Sbjct: 299 NPQFEGQTKTKLGNPEVRQIVSQAAGEGLERYLLENPAAAKSIIDKVILASRARIAARKA 358 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 ++ TRRK LD KLADC + P++SE+++VEGDSAGGSAKQGR QAILPLRG Sbjct: 359 KEATRRKSPLDALGFASKLADCRNKKPEESEIYIVEGDSAGGSAKQGRDSAFQAILPLRG 418 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 K+LNVE+AR D++LS++EI ++I A GTGIG+D FD++K RYHKI+IMTDADVDGAHIRT Sbjct: 419 KVLNVEKARLDRILSNKEILSMIQAFGTGIGED-FDVSKARYHKIVIMTDADVDGAHIRT 477 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 L+LTF +R M LI G++Y+ +PPLY + GK ++Y+ DEE L L Sbjct: 478 LMLTFLYRYMKPLIDLGYVYVAQPPLYKVQSGKRVEYIYDEERLRVVLEQM 528 >gi|289434570|ref|YP_003464442.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170814|emb|CBH27356.1| DNA topoisomerase IV, B subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 655 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 262/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GLDAV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + + R+G YE F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTVNRDGAKYEQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL RLRE +FL + I LID+R E + ++ G++ FV Y++ K Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + N D +V + F + + + ++ + + K Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630 >gi|15924344|ref|NP_371878.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|15926934|ref|NP_374467.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus N315] gi|148267843|ref|YP_001246786.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH9] gi|156979673|ref|YP_001441932.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|253317051|ref|ZP_04840264.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006142|ref|ZP_05144743.2| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795590|ref|ZP_05644569.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781] gi|258413400|ref|ZP_05681676.1| topoisomerase IV subunit B [Staphylococcus aureus A9763] gi|258420494|ref|ZP_05683436.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719] gi|258434734|ref|ZP_05688808.1| topoisomerase IV subunit B [Staphylococcus aureus A9299] gi|258444690|ref|ZP_05693019.1| topoisomerase IV subunit B [Staphylococcus aureus A8115] gi|258447475|ref|ZP_05695619.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300] gi|258454696|ref|ZP_05702660.1| topoisomerase IV subunit B [Staphylococcus aureus A5937] gi|269202977|ref|YP_003282246.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED98] gi|282892845|ref|ZP_06301080.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117] gi|282928913|ref|ZP_06336502.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102] gi|296275475|ref|ZP_06857982.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MR1] gi|13701151|dbj|BAB42446.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus N315] gi|14247125|dbj|BAB57516.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu50] gi|147740912|gb|ABQ49210.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH9] gi|156721808|dbj|BAF78225.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus Mu3] gi|257789562|gb|EEV27902.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9781] gi|257839964|gb|EEV64432.1| topoisomerase IV subunit B [Staphylococcus aureus A9763] gi|257843442|gb|EEV67849.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A9719] gi|257849095|gb|EEV73077.1| topoisomerase IV subunit B [Staphylococcus aureus A9299] gi|257850183|gb|EEV74136.1| topoisomerase IV subunit B [Staphylococcus aureus A8115] gi|257853666|gb|EEV76625.1| DNA topoisomerase IV, subunit B [Staphylococcus aureus A6300] gi|257863079|gb|EEV85843.1| topoisomerase IV subunit B [Staphylococcus aureus A5937] gi|262075267|gb|ACY11240.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED98] gi|282589422|gb|EFB94512.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A10102] gi|282764842|gb|EFC04967.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus A8117] gi|315131157|gb|EFT87141.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS03] gi|329727072|gb|EGG63528.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21172] Length = 665 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 265/598 (44%), Positives = 372/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+G+IY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|49483547|ref|YP_040771.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MRSA252] gi|49241676|emb|CAG40364.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MRSA252] Length = 665 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|257425420|ref|ZP_05601845.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257428080|ref|ZP_05604478.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257430711|ref|ZP_05607093.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257433471|ref|ZP_05609829.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257436312|ref|ZP_05612359.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M876] gi|282903934|ref|ZP_06311822.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C160] gi|282905699|ref|ZP_06313554.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908667|ref|ZP_06316488.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910936|ref|ZP_06318739.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282914143|ref|ZP_06321930.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282919065|ref|ZP_06326800.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282924248|ref|ZP_06331922.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C101] gi|293501171|ref|ZP_06667022.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293510132|ref|ZP_06668840.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M809] gi|293526723|ref|ZP_06671408.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|297591171|ref|ZP_06949809.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus MN8] gi|257271877|gb|EEV04015.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 55/2053] gi|257274921|gb|EEV06408.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 65-1322] gi|257278839|gb|EEV09458.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus 68-397] gi|257281564|gb|EEV11701.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus E1410] gi|257284594|gb|EEV14714.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M876] gi|282313635|gb|EFB44028.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C101] gi|282316875|gb|EFB47249.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C427] gi|282322211|gb|EFB52535.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M899] gi|282325541|gb|EFB55850.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327485|gb|EFB57777.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330991|gb|EFB60505.1| DNA topoisomerase IV B subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282595552|gb|EFC00516.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus C160] gi|290920795|gb|EFD97858.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096176|gb|EFE26437.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467076|gb|EFF09594.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus M809] gi|297576057|gb|EFH94773.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus MN8] gi|302332970|gb|ADL23163.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, ParE [Staphylococcus aureus subsp. aureus JKD6159] gi|312438246|gb|ADQ77317.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus TCH60] Length = 665 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|71903198|ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180] gi|71802293|gb|AAX71646.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180] Length = 650 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 274/617 (44%), Positives = 393/617 (63%), Gaps = 6/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDEALAGFASH 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 68 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 127 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF- 182 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF Sbjct: 128 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y+ L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 187 ETTQFDYNVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 246 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 247 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 306 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 307 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 366 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 367 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 426 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 427 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 486 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMT ADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 487 TGFGAD-FDVSKARYQKLVIMTIADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 545 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 546 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 603 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 604 PENRLMARVTVDDAAEA 620 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 59/76 (77%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 575 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 634 Query: 788 RREFIQENSLPSALDI 803 RR FI+EN++ S LDI Sbjct: 635 RRNFIEENAVYSTLDI 650 >gi|88195079|ref|YP_499879.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221479|ref|YP_001332301.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus str. Newman] gi|161509519|ref|YP_001575178.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848358|ref|ZP_06789105.1| DNA topoisomerase IV [Staphylococcus aureus A9754] gi|59799890|sp|P0A0K9|PARE_STAAW RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|84029386|sp|Q5HG65|PARE_STAAC RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|112823997|sp|Q2FYS5|PARE_STAA8 RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|112823998|sp|P0C1S7|PARE_STAAU RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|561879|gb|AAA53115.1| gyrase-like protein beta subunit [Staphylococcus aureus] gi|1777320|dbj|BAA11086.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] gi|87202637|gb|ABD30447.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374279|dbj|BAF67539.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|160368328|gb|ABX29299.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825158|gb|EFG41580.1| DNA topoisomerase IV [Staphylococcus aureus A9754] gi|320140314|gb|EFW32172.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus MRSA131] Length = 663 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|224476482|ref|YP_002634088.1| DNA topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus TM300] gi|222421089|emb|CAL27903.1| topoisomerase IV subunit B [Staphylococcus carnosus subsp. carnosus TM300] Length = 666 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 267/671 (39%), Positives = 383/671 (57%), Gaps = 21/671 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + +Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L G+ Sbjct: 1 MATN-KRQNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N D S TV DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIKVTINKDDSITVEDNGRGMPTGIH-KSGKPTVEVIFTILHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + I R+G IYE F G+ L G T+VTF P+ Sbjct: 118 HGVGASVVNALSEWLDVEIYRDGYIYEQKFNKGGLPATGLEKKGKTRKKG-TKVTFKPNP 176 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+DTL RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKSTTAFNFDTLSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVSTFSGESHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+++S+++P+ +F QTK KL ++E RS V Sbjct: 296 VFNDYARRIGELKAKDKNLEGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTAEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S + + L +LEE +K +VKK + A R+AAR+AR+ T +K L GKL Sbjct: 356 DSVITEKLPYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR D + ++EI Sbjct: 416 TPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G + F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +I PPLY + + K ++Y +E LE ++ + + Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNPDQLWETT 594 Query: 591 IDDALKIDKLIK-----DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 ++ + ++ ++ + + S L N I Sbjct: 595 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIERHVEFGLQEDQSILENDEIQI 654 Query: 646 AEKSEKSWHGS 656 ++ E Sbjct: 655 LDQDEYGEEEE 665 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAVKAQQAREAARKAREDARTGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 + ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGNEFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG S+QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKSKKVEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNPDQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+ + Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIERH 635 >gi|19745973|ref|NP_607109.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS8232] gi|19748134|gb|AAL97608.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes MGAS8232] Length = 650 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N D ++ + F + + + + + + K + Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558 Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 SYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639 >gi|71903356|ref|YP_280159.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180] gi|71802451|gb|AAX71804.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS6180] Length = 650 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N D ++ + F + + + + + + K + Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558 Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 SYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639 >gi|158311873|ref|YP_001504381.1| DNA gyrase subunit B [Frankia sp. EAN1pec] gi|158107278|gb|ABW09475.1| DNA gyrase, B subunit [Frankia sp. EAN1pec] Length = 652 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 280/591 (47%), Positives = 370/591 (62%), Gaps = 18/591 (3%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +YDA SI++L+GL+AV+KRP MYIG T GE GLHH++YEV+DNA+DE+L GY D I+VTL Sbjct: 2 AYDASSIKVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNAVDEALAGYCDTISVTL 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V+DNGRGIP H + I E+++T LHAGGKF+ +SY VSGGLHGVGVSVV Sbjct: 61 LADGGVRVTDNGRGIPVGEHPVKKIPTVELVLTTLHAGGKFDGESYAVSGGLHGVGVSVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ L + I+ +G+ + + N PL T TGT +TF IF + Sbjct: 121 NALSTRLDVEIQTDGHSWFQPYENSRPARPLAQT-GTSKKTGTTITFWADPTIFETTTYK 179 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSP--------EPREITMFYKGGIEAFVSYLDRHK 240 Y+TL RL+E++FLN + I+L D+R EP E+T Y G+ FV +L+ K Sbjct: 180 YETLFRRLQEMAFLNKGLSITLRDERGKATETEEAAEPTEVTFKYDNGLVDFVGHLNATK 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + +S I ++ I +LAM+WN GY+E+V F N I +GGTH G R+ALT + Sbjct: 240 DAVHRSVISLESKGTGIEAELAMQWNSGYNESVYTFANTINTHEGGTHEEGFRAALTSAV 299 Query: 301 TSYVEKSFGSKKDK-------RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +Y + K K + GDD REG T+++S+K+ P+F QTK KL ++E + Sbjct: 300 NAYAKDQNLLKPVKAGSKNSDERLSGDDIREGLTAIISVKLAQPQFEGQTKTKLGNTEAK 359 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 V+ L W E + EA+ IV K LDA R AAR+ARDLTRRKG+L LPGK Sbjct: 360 KFVQEMCYSALKDWFEVNRTEARSIVSKALDAQRARIAARQARDLTRRKGLLGGTGLPGK 419 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC DP++ EL++VEGDSAGGSAK GR + QAILPLRGKILNVE+AR D++L + E Sbjct: 420 LADCQFTDPERCELYIVEGDSAGGSAKGGRDSKFQAILPLRGKILNVEKARIDRVLKNTE 479 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + LI ALG GI D FDI KLRYHKI++M DADVDG HIRTLLLT FR M L+ G Sbjct: 480 VQALIQALGCGI-HDDFDIAKLRYHKIVLMADADVDGQHIRTLLLTLLFRFMRPLVEAGH 538 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 +++ +PPLY I G+ + D L+ Q + +L D+ Sbjct: 539 VFLAQPPLYKIKWGREDWEYAYSDRERDGLLEQGVEAGRKLPKDAIQRFKG 589 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 45/85 (52%), Positives = 62/85 (72%), Gaps = 3/85 (3%) Query: 722 LLDTIFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LL+ GRK ++QR+KGLGEMNA++LW+TT++PD R LL+V + DA+ AD+LFS Sbjct: 568 LLEQGVEAGRKLPKDAIQRFKGLGEMNATELWDTTMDPDKRILLQVTLDDAAVADELFSV 627 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 LMG++V+ RR FIQ N+ LDI Sbjct: 628 LMGEDVDARRSFIQRNAKDVRFLDI 652 >gi|295425411|ref|ZP_06818109.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus amylolyticus DSM 11664] gi|295064913|gb|EFG55823.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus amylolyticus DSM 11664] Length = 653 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 280/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 15 EKEADKYNASQIQVLGGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIIDNSIDERLAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y + F +G + + + G+ + GT V F P DIF Sbjct: 134 GASVVNALSTKLDVTVVRDGKKYFIDFDHGRVKDEMKQIGTVPLDQHGTTVHFYPDPDIF 193 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ L++R+REL+FLN ++++ DKR Y+GGI+ +V++L+R + Sbjct: 194 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDTAETDVYLYEGGIKEYVAFLNRDTE 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G D I++++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 254 VLFDDPIYVEGDYDGINVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPNPQFEGQTKTKLGNSDARTAVDKAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 ETFSRFLMENPSVGRKIVEKAQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQ RSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 434 PSISELFIVEGNSAGGSAKQARSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK ++Y+ +E L DYL + S + I G + L + ++ Sbjct: 553 YQVRQGKVVKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDPEQLWDT--TMNPENRR 610 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + K E + ++ + A + N Sbjct: 611 LDRVSPEYAKDADEVFDLLMGNEVAPRRKFIETNAKYVEN 650 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 286 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 345 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 346 HPNPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKAQLAERARTAAK 405 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 406 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQARSRLTQAILPI 465 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 466 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 525 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K I Sbjct: 526 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPI- 584 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLW+TT+NP+ R L RV A AD++F LMG+EV PRR+FI+ N Sbjct: 585 VQRYKGLGEMDPEQLWDTTMNPENRRLDRVSPEYAKDADEVFDLLMGNEVAPRRKFIETN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AKYVENLD 652 >gi|329733638|gb|EGG69966.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus 21193] Length = 665 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 265/601 (44%), Positives = 375/601 (62%), Gaps = 14/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIDDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++Y +E L ++ + + K + Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGFTLQRYKGLGEMNPKQLWETTM 595 Query: 592 D 592 + Sbjct: 596 N 596 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPKQLWETTMNPETRTLIRVQVDDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|116872719|ref|YP_849500.1| DNA topoisomerase IV subunit B [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741597|emb|CAK20721.1| DNA topoisomerase IV, B subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 655 Score = 552 bits (1422), Expect = e-154, Method: Composition-based stats. Identities = 260/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPTIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNY+TL RLRE +FL + I L+D+R + ++ G++ FV Y++ K Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDNQNILENENMMVEE 651 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630 >gi|295837751|ref|ZP_06824684.1| DNA gyrase subunit B [Streptomyces sp. SPB74] gi|197699827|gb|EDY46760.1| DNA gyrase subunit B [Streptomyces sp. SPB74] Length = 682 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 286/653 (43%), Positives = 393/653 (60%), Gaps = 27/653 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + +SYDA++I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A Sbjct: 18 TSGSAETSYDANAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 76 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 77 DTIDVTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 136 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS+ +++ +K +G+I+ + G PL G A + GT VTF D+ Sbjct: 137 GVGVSVVNALSTRVEVEVKTDGHIWTQQYERGAPTAPLHQ-GEATEEHGTSVTFWADGDV 195 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREIT 222 F +++++TL R +E++FLN + I L D+R PE R +T Sbjct: 196 FETTEYSFETLARRFQEMAFLNKGLTIKLTDERESAKATVGADSAEVVDAEEPPEARTVT 255 Query: 223 MFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNN 279 Y+GGI FV Y R + + S I ++ +S+++AM+WN GY E V F N Sbjct: 256 YHYEGGIVDFVKYLNSRKGEVIHPSVIDVEAEDKEKLLSVEVAMQWNAGYTEGVYSFANT 315 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R ALT + Y ++ ++ GDD REG T+++S+K+ +P+F Sbjct: 316 IHTHEGGTHEEGFRGALTTIVNKYARDKKLLREKDGNLTGDDIREGLTAIISVKLGEPQF 375 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL ++E R+ V+ V + L+ W + +P EA I++K + A+ R AAR+ARDLT Sbjct: 376 EGQTKTKLGNTEARTFVQKIVYERLADWFDRNPNEASDIIRKGISAATARVAARKARDLT 435 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRKG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR QAILP+RGKILN Sbjct: 436 RRKGLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILN 495 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VE+AR DK+L +QEI LI+A G G+ +D FDI KLRYHKII+M DADVDG HI TLLLT Sbjct: 496 VEKARVDKILHNQEIQALISAFGAGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLT 554 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 F FR M L+ +G +Y+ +PPLY I GK + D LI L + Sbjct: 555 FLFRFMRPLVESGHVYLSRPPLYKIKWGKDDVDYAYSDRERDALIALGRENGKRLREGAV 614 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + +D T + A +F+ +++ Sbjct: 615 QRFKG--LGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 665 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 6/89 (6%) Query: 720 CSLLDTI-FSIGRK---GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L + G++ G ++QR+KGLGEM+A +L TT++ D R L +V + DA+QADD Sbjct: 595 RDALIALGRENGKRLREG-AVQRFKGLGEMDAEELRVTTMDQDHRVLGQVTLDDAAQADD 653 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 LFS LMG++VE RR+FIQ N+ LDI Sbjct: 654 LFSVLMGEDVEARRQFIQRNAKDVRFLDI 682 >gi|42518089|ref|NP_964019.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533] gi|41582373|gb|AAS07985.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533] Length = 655 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 277/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 17 EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 76 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L++ + R+G Y +SF +G + + G+ + GT V F P DIF Sbjct: 136 GASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVRFYPDPDIF 195 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ L++R+REL+FLN ++++ DKR ++GGI+ +V++L++ ++ Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G+ + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+++S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAIVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK +Y+ +E L DYL S + I G + L ++ Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWET--TMNPENRR 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + + + + +E A + N Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAIVSVK 347 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + + L D + K I Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPI- 586 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRREFI++N Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 796 SLPS-ALD 802 + LD Sbjct: 647 AKYVENLD 654 >gi|58336359|ref|YP_192944.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM] gi|227902590|ref|ZP_04020395.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796] gi|58253676|gb|AAV41913.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM] gi|227869679|gb|EEJ77100.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796] Length = 654 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 280/655 (42%), Positives = 408/655 (62%), Gaps = 19/655 (2%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++EV Sbjct: 1 MADNSKENLDKIKEYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEV 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I +T+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEITINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQVGTVPLD 179 Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 GT V F P DIF F+ L++R+REL+FLN ++++ DKR ++ Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLELTFTDKRKETAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L+ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNEGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + + G + Sbjct: 539 PMIDKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 L ++ + P + K E + ++ A + N Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKDADEVFELLMGNEVAPRRDFIQKNAKYVEN 651 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 73/369 (19%), Positives = 126/369 (34%), Gaps = 35/369 (9%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ +S ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSIGRKIVEKGQLAERARSAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734 + I + L + G IK + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD++F LMG+EV PRR+FIQ+ Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADEVFELLMGNEVAPRRDFIQK 644 Query: 795 NSLPS-ALD 802 N+ LD Sbjct: 645 NAKYVENLD 653 >gi|28896141|ref|NP_802491.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes SSI-1] gi|28811391|dbj|BAC64324.1| putative DNA topoisomerase IV, subunit B [Streptococcus pyogenes SSI-1] Length = 649 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 273/650 (42%), Positives = 399/650 (61%), Gaps = 19/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGDDIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ Sbjct: 179 DDKIFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDSIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED I G ++ N L Sbjct: 537 VYIALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWE 595 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 378 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 437 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 438 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 497 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712 N D ++ + + + +F +Y R L L + G + Sbjct: 498 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 555 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 KI L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++ Sbjct: 556 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 615 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMGD+ PRR++I++N Sbjct: 616 AERRVSVLMGDKAAPRRQWIEDN 638 >gi|50914074|ref|YP_060046.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394] gi|50903148|gb|AAT86863.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10394] Length = 650 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 273/647 (42%), Positives = 396/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVTSHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713 N D ++ + F + + + + L L + G +K Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+ PRR++I++N Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639 >gi|94994199|ref|YP_602297.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750] gi|94547707|gb|ABF37753.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10750] Length = 650 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713 N D ++ + F + + + + L L + G +K Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+ PRR++I++N Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639 >gi|29830864|ref|NP_825498.1| DNA gyrase subunit B [Streptomyces avermitilis MA-4680] gi|29607977|dbj|BAC72033.1| putative DNA gyrase subunit B [Streptomyces avermitilis MA-4680] Length = 692 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 286/653 (43%), Positives = 399/653 (61%), Gaps = 24/653 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A Sbjct: 31 SNGEVTASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHA 89 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I +T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 90 DTIDITILADGGVRVIDNGRGIPVGIVPSEGKPALEVVLTVLHAGGKFGGGGYAVSGGLH 149 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS + + +K +G + + G+ PL A ++TGT VTF +DI Sbjct: 150 GVGVSVVNALSSKVSVEVKTDGFRWTQEYKMGVPTAPLSQ-NEATDETGTSVTFWADADI 208 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225 F +++++TL R +E++FLN + I L D+R E + +T Y Sbjct: 209 FETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADEAGADEKDEVKTVTYHY 268 Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282 +GGI FV Y R + + I ++ + +S+++AM+WN GY E V F N I Sbjct: 269 EGGIVDFVKYLNSRKGDAVHPTVIDLEAEDRDKSLSLEVAMQWNSGYTEGVYSFANIIHT 328 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F Q Sbjct: 329 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 388 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E ++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRK Sbjct: 389 TKTKLGNTEAKTFVQKAVYEHLNDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRK 448 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 G+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+ Sbjct: 449 GLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 508 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F Sbjct: 509 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 567 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M L+ G +++ +PPLY + G+ + D LI + DS Sbjct: 568 RFMRPLVEAGHVFLSRPPLYKLKWGRDDFEYAYSDRERDALIELGRQAGKRVREDSIQRF 627 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 628 KG--LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 678 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR + S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 606 DALIELGRQAGKRVREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 665 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 666 SVLMGEDVEARRAFIQRNAKDVRFLDI 692 >gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group] gi|75285839|sp|Q5NBJ3|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group] gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group] gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group] Length = 729 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 262/598 (43%), Positives = 369/598 (61%), Gaps = 11/598 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + Y A ++Q+L+ LD V+ RP MYIG T G GLHH++YE+LDNA+DE+ GY Sbjct: 80 MQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGST-GSRGLHHLVYEILDNAVDEAQAGY 138 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSG 118 A + V L+ D S +V+DNGRGIPTD+H + S E ++T +HAGGKF Y VSG Sbjct: 139 ATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMHAGGKFGGSKSGYTVSG 198 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVT---GSAGNDTGTEVTF 175 GLHGVG+SVVNALS L++ + R+G Y ++ G L + + GT + F Sbjct: 199 GLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSRTLSDESSSRQGTRIRF 258 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSP-EPREITMFYKGGIEAFV 233 P IF+ F+++T+ R+REL+FLN + I+L + + + Y GG+ +V Sbjct: 259 WPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQVQHNEYCYAGGLVEYV 318 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGL 292 +L+ KK L PI + D I++D++++W D Y + VL + N+I DGGTH+ GL Sbjct: 319 KWLNTDKKSLH-DPIAFRKEMDGITVDVSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGL 377 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 +++LTR I ++ +KS K S+ G+ REG T ++++K+P+P F QTK +L + EV Sbjct: 378 KTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEV 437 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R +VE V + L+ +LE HP I+ K L+A AA+RAR+L R K VL +SLPG Sbjct: 438 RRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRARELVRTKSVLKSSSLPG 497 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC+ DP++SE+F+VEGDSAGGSAKQGR R+ QAILPLRGKILN+ER + ++ Sbjct: 498 KLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGKILNIERRDEAALYKNE 557 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 EI LI ALG G+ + F+ LRYHKI+I+TDADVDGAHIRTLLLTFFFR +L G Sbjct: 558 EIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEG 617 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +Y+ PPLY + RGK Y D+ L++ + + G + L Sbjct: 618 CIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRFKGLGEMMPAQLWE 675 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E E + ++ N + + K E ++ I++ V + Sbjct: 542 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVIL-TDADVDGAHIRT 600 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGIS 735 F F + I + + L++T + Sbjct: 601 LLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA--SYH 658 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEM +QLWETT++P+ R L ++K+ DA++A+ +FS LMG V+ R++ IQ Sbjct: 659 IQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNA 718 Query: 796 SLPSA---LDI 803 + LDI Sbjct: 719 ASMVNLEHLDI 729 >gi|82750947|ref|YP_416688.1| DNA topoisomerase IV subunit B [Staphylococcus aureus RF122] gi|82656478|emb|CAI80900.1| topoisomerase IV subunit B [Staphylococcus aureus RF122] Length = 665 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 270/676 (39%), Positives = 387/676 (57%), Gaps = 20/676 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQSGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FV Y++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVGYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+SI++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSIRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWET- 593 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 ++ + + + + + Q + + + + Sbjct: 594 ----TMNPETRTLIRVQVEDELRSSKRVTTLMGDKVQPRREWIEKHVEFGMQEDQSILDN 649 Query: 652 SWHGSINNSDILVKRI 667 S + N + I Sbjct: 650 SEVQVLENDQFDEEEI 665 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDELRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|156889076|gb|ABU96689.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 273/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +V+S Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 600 DPETRTLIRVTIDDLARAERR 620 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 382 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I ++ N Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 501 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K + Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 622 SVLMGDKAAPRRQWIEDN 639 >gi|59798277|sp|Q6GH51|PARE_STAAR RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B Length = 663 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|323441138|gb|EGA98845.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O11] Length = 663 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|94988398|ref|YP_596499.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429] gi|94992280|ref|YP_600379.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096] gi|94541906|gb|ABF31955.1| topoisomerase IV subunit B [Streptococcus pyogenes MGAS9429] gi|94545788|gb|ABF35835.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS2096] Length = 650 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N D ++ + F + + + + + + K + Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTEKV 558 Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 SYAWTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639 >gi|295427868|ref|ZP_06820500.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128226|gb|EFG57860.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16] gi|298694654|gb|ADI97876.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus ED133] Length = 663 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 264/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|150393905|ref|YP_001316580.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus JH1] gi|295406298|ref|ZP_06816105.1| DNA topoisomerase IV [Staphylococcus aureus A8819] gi|297244527|ref|ZP_06928410.1| DNA topoisomerase IV [Staphylococcus aureus A8796] gi|54038819|sp|P66939|PARE_STAAN RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|54041931|sp|P66938|PARE_STAAM RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|1777317|dbj|BAA11084.1| DNA topoisomerase IV GrlB subunit [Staphylococcus aureus] gi|149946357|gb|ABR52293.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus JH1] gi|294968886|gb|EFG44908.1| DNA topoisomerase IV [Staphylococcus aureus A8819] gi|297178557|gb|EFH37803.1| DNA topoisomerase IV [Staphylococcus aureus A8796] Length = 663 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 263/594 (44%), Positives = 369/594 (62%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+G+IY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|16800393|ref|NP_470661.1| DNA topoisomerase IV subunit B [Listeria innocua Clip11262] gi|16413798|emb|CAC96556.1| parE [Listeria innocua Clip11262] Length = 655 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 260/658 (39%), Positives = 387/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNY+TL RLRE +FL + I L+D+R + ++ G++ FV Y++ K Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIQLVDERVG--MAESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L + +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHP-VVSFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDAAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDNQNILENENMMVEE 651 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDAAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630 >gi|227877545|ref|ZP_03995605.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256849618|ref|ZP_05555050.1| subunit B [Lactobacillus crispatus MV-1A-US] gi|227862844|gb|EEJ70303.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256713734|gb|EEU28723.1| subunit B [Lactobacillus crispatus MV-1A-US] Length = 654 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 400/626 (63%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKENLEKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTINEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+ Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDSKKYFIDFDHGRVKDEMKQIGTVPLD 179 Query: 168 DTGTEVTFLPSSDIFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF+ D L++R+REL+FLN + ++ DKR ++ Sbjct: 180 EHGTIVHFYPDPDIFTETIVFDDKILKNRIRELAFLNKGLTLTFTDKRKDTAETDVYKFE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDDPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y KS K ++ G+D REG T+++S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI KPPLY + +GK ++Y+ +E L DYL + S + G + Sbjct: 539 PMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPKPTVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKSKILKDKDDNLSGEDIREGMTAIVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIDKGYVYIAKPPLYQVRQGKVVRYLDTDEELHDYLGSLQPSPK-PT 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+N Sbjct: 586 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVSPRRDFIQKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|161506639|ref|YP_001576587.1| DNA gyrase [Lactobacillus helveticus DPC 4571] gi|160347628|gb|ABX26302.1| DNA gyrase [Lactobacillus helveticus DPC 4571] Length = 654 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 278/626 (44%), Positives = 401/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKKNLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I +T+N DGS TV D+GRGIP D+ K+ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEITVNEDGSVTVQDDGRGIPVDIQKKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLE 179 Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 GT V F P DIF F+ L++R+REL+FLN ++++ DKR Y+ Sbjct: 180 QHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + + G + Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPVVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L ++ + P + K Sbjct: 599 QLWET--TMNPENRRLDRVSPEYAKD 622 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 125/369 (33%), Gaps = 35/369 (9%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKSFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTI--FSIGRKGI 734 + I + L + G IK + L D + K + Sbjct: 527 TLLLTLFYNYMRPMIEKGYVY-IARPPLYQVRQGKVIKYLDTDEELHDYLGSLQPSPKPV 585 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+ Sbjct: 586 -VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQK 644 Query: 795 NSLPS-ALD 802 N+ LD Sbjct: 645 NAKYVENLD 653 >gi|15674930|ref|NP_269104.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes M1 GAS] gi|13622073|gb|AAK33825.1| putative DNA topoisomerase IV (subunit B) [Streptococcus pyogenes M1 GAS] Length = 650 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713 N D ++ + F + + + + L L + G +K Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+ PRR++I++N Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639 >gi|229825735|ref|ZP_04451804.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC 49176] gi|229790298|gb|EEP26412.1| hypothetical protein GCWU000182_01098 [Abiotrophia defectiva ATCC 49176] Length = 677 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 248/641 (38%), Positives = 376/641 (58%), Gaps = 19/641 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+N YD I IL+GL+AV+KRP MYIG T G GLHH+I+E+LDN IDE L G+ Sbjct: 1 MSEN-----YDGSQIVILEGLEAVRKRPGMYIGST-GTRGLHHLIWEILDNGIDEHLAGF 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I + L DG T+ D GRG+P D+H + I V+ T LHAGGKF+ +YKVSGGL Sbjct: 55 CSQIDLILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPL------VVTGSAGNDTGTEV 173 HGVG SVVNALS+ + + I+R+GN+Y + N G L V +D GT V Sbjct: 115 HGVGASVVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSV 174 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 TF P IF +F D ++ +L+E +FLN ++++ D+ + E T K GI+++V Sbjct: 175 TFYPDDTIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEE--KTYEEKDGIKSYV 232 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 Y++R + + + ++G +I +++A ++ +G+ E + + N I DGGT ++G + Sbjct: 233 KYINRETEVIHDEVVYVEGESGDIEVEVAFQYTNGFSEQINAYCNRINVVDGGTLVTGFK 292 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR + Y + K + G D R G +++SIK PDP+F QTK KL +++ + Sbjct: 293 TALTRVMNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAK 352 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 + VE V+ + + +++ K I+ + R A+ +AR+ + L+ + K Sbjct: 353 TAVEEVVSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLK--SLNDFDVKSK 410 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LA CS ++ ++ E++LVEGDSAGG+ K R+R+ QA+LPLRGKILNVE+A +K+L + E Sbjct: 411 LASCSSKNAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNE 470 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I ++I G GIG D FDI KLRY KIII+TDADVDGAHI TLLLTFF+R MP LI G Sbjct: 471 IKSMIATFGCGIG-DEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGK 529 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 +Y PPLY + +S V +E+ L + ++ +E K + +K+ + + Sbjct: 530 IYRGLPPLYKVDYEESGAKVLEEKKLGEGQLDI-FQLGVEDKPSEKQLKAKSGKKKKKSE 588 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 + D ++ F N ++ +E G+ ++ Q +L Sbjct: 589 YIFNDYELEKFKKNKNRKILEIQRYKGLGEMDASQLWETTL 629 Score = 129 bits (325), Expect = 2e-27, Method: Composition-based stats. Identities = 42/73 (57%), Positives = 54/73 (73%) Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 RK + +QRYKGLGEM+ASQLWETTL+P TRSL R+ I+D +AD++ S LM V PRRE Sbjct: 605 RKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDTVEADEVTSLLMSSVVPPRRE 664 Query: 791 FIQENSLPSALDI 803 FI + + +DI Sbjct: 665 FIMNEAKYAKVDI 677 >gi|300362674|ref|ZP_07058850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] gi|300353665|gb|EFJ69537.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] Length = 655 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 17 EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 76 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y +SF +G + + G+ + GT V F P DIF Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLEEHGTIVHFYPDPDIF 195 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ L++R+REL+FLN ++++ DKR ++GGI+ +V++L++ ++ Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G+ + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK +Y+ +E L DYL S + + G + L ++ Sbjct: 555 YQVRQGKIEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + + + + +E A + N Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + + L D + K + Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPSPKPV- 586 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRREFI++N Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 796 SLPS-ALD 802 + LD Sbjct: 647 AKYVENLD 654 >gi|301320449|gb|ADK69092.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 634 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 247/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + V DNGRGIP ++ + SA ++ T+LHAGGKF+ +SYK+SGGLHGVG S Sbjct: 61 TITKENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + ++I +++A+++N Y EN++ F NNI +GGTH GL+ AL R I Y Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA++AR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI ++ITA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAIGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + I ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI S LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|156889072|gb|ABU96687.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] gi|156889074|gb|ABU96688.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 273/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +V+S Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVHTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 600 DPETRTLIRVTIDDLARAERR 620 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 382 VRKAIKARNAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I ++ N Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVHTIGAGVGADFNLEDINY 501 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K + Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 622 SVLMGDKAAPRRKWIEDN 639 >gi|227889153|ref|ZP_04006958.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|268318566|ref|YP_003292222.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785] gi|227850382|gb|EEJ60468.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|262396941|emb|CAX65955.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785] Length = 655 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 17 EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 76 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y +SF +G + + G+ + GT V F P DIF Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVHFYPDPDIF 195 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ L++R+REL+FLN ++++ DKR ++GGI+ +V++L++ ++ Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G+ + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK +Y+ +E L DYL S + + G + L ++ Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + + + + +E A + N Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + + L D + K + Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPV- 586 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRREFI++N Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 796 SLPS-ALD 802 + LD Sbjct: 647 AKYVENLD 654 >gi|94990278|ref|YP_598378.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270] gi|94543786|gb|ABF33834.1| Topoisomerase IV subunit B [Streptococcus pyogenes MGAS10270] Length = 650 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTILKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTYGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 6/261 (2%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT 717 N D ++ + F + + + + + + K + Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKV 558 Query: 718 GPC---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 559 SYAWTYGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAE 618 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 619 RRVSVLMGDKAAPRRQWIEDN 639 >gi|227893834|ref|ZP_04011639.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] gi|227864323|gb|EEJ71744.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] Length = 654 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 279/626 (44%), Positives = 404/626 (64%), Gaps = 19/626 (3%) Query: 1 MSDNIQNS------------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEV 48 M+DN + + Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E+ Sbjct: 1 MADNSKENLDKVKKYEKEADKYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEI 59 Query: 49 LDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGK 108 +DN+IDE L G+A I VT+N DGS TV D+GRGIP D+ ++ G A E + T LHAGGK Sbjct: 60 IDNSIDERLAGFATKIEVTVNEDGSVTVQDDGRGIPVDIQEKTGRPALETVFTVLHAGGK 119 Query: 109 FNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-N 167 F YKVSGGLHGVG SVVNALS+ L + + R+G Y + F +G + + + G+ + Sbjct: 120 FGGGGYKVSGGLHGVGASVVNALSTKLDVTVMRDGKKYFIDFDHGRVKDEMKQIGTVPLD 179 Query: 168 DTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYK 226 + GT V F P DIF F+ L++R+REL+FLN ++++ DKR Y+ Sbjct: 180 EHGTIVHFYPDPDIFTETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKDSAETDVYKYE 239 Query: 227 GGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 GGI+ +V++L++ ++ L PI ++ + + I +++A+++ +GY ++ F NNI +GG Sbjct: 240 GGIKEYVAFLNKGQEVLFDEPIYVESTYNGIDVEVALQYTNGYKTTLMTFANNIHTYEGG 299 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 H +G ++ALTR + Y K+ K ++ G+D REG T+V+S+K P P+F QTK K Sbjct: 300 MHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVKHPSPQFEGQTKTK 359 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L +S+ R+ V+ ++ S +L E+P + IV+K A R AA+RAR++TR+K L+ Sbjct: 360 LGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLE 419 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 IA+LPGKLAD + DP SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D Sbjct: 420 IANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMD 479 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L++QEI +L TALGTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M Sbjct: 480 RILANQEIRSLFTALGTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMR 538 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKN 585 +I G++YI +PPLY + +GK ++Y+ +E L DYL + S + I G + Sbjct: 539 PMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPIVQRYKGLGEMDPE 598 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKT 611 L + ++ + P + K Sbjct: 599 QLWDT--TMNPENRRLDRVSPEYAKD 622 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 68/368 (18%), Positives = 122/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 287 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGMTAVVSVK 346 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 347 HPSPQFEGQTKTKLGNSDARTAVDKAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 406 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 407 RAREVTRKKSGLEIANLPGKLADNTSNDPNISELFIVEGNSAGGSAKQGRSRLTQAILPI 466 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 467 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 526 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + L D + K I Sbjct: 527 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVVKYLDTDEELHDYLGSLQPSPKPI- 585 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLW+TT+NP+ R L RV A AD +F LMG+EV PRR+FIQ+N Sbjct: 586 VQRYKGLGEMDPEQLWDTTMNPENRRLDRVSPEYAKDADAVFELLMGNEVAPRRDFIQKN 645 Query: 796 SLPS-ALD 802 + LD Sbjct: 646 AKYVENLD 653 >gi|42560566|ref|NP_975017.1| DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492062|emb|CAE76659.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 634 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 246/565 (43%), Positives = 362/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + V DNGRGIP ++ + SA ++ T+LHAGGKF+ +SYK+SGGLHGVG S Sbjct: 61 TITKENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSESYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + ++I +++A+++N Y EN++ F NNI +GGTH GL+ L R I Y Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQVLIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA++AR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI ++ITA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAIGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + I ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAIGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI S LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|256384292|gb|ACU78862.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385125|gb|ACU79694.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455935|gb|ADH22170.1| DNA gyrase, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 634 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 246/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + V DNGRGIP ++ + SA ++ T+LHAGGKF+ ++YK+SGGLHGVG S Sbjct: 61 TITKENEVIVQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEIIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + ++I +++A+++N Y EN++ F NNI +GGTH GL+ AL R I Y Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA++AR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQKAREETRRKSALDSFSLPGKLADCETKDSSI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI ++ITA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIITAVGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDSQLDELKNNEFNN 561 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + + ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIITAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI S LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDSQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|116628688|ref|YP_813860.1| DNA gyrase, B subunit [Lactobacillus gasseri ATCC 33323] gi|238853343|ref|ZP_04643723.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4] gi|282852320|ref|ZP_06261662.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1] gi|311111572|ref|ZP_07712969.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22] gi|116094270|gb|ABJ59422.1| DNA gyrase subunit B [Lactobacillus gasseri ATCC 33323] gi|238834031|gb|EEQ26288.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4] gi|282556062|gb|EFB61682.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1] gi|311066726|gb|EFQ47066.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22] Length = 655 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 277/640 (43%), Positives = 404/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 17 EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 76 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y +SF +G + + G+ + GT V F P DIF Sbjct: 136 GASVVNALSTKLDVTVMRDGKKYAISFDHGRVVGEMKQIGTVPLEEHGTIVHFYPDPDIF 195 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F+ L++R+REL+FLN ++++ DKR ++GGI+ +V++L++ ++ Sbjct: 196 TETTTFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G+ + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+S+K P+P+F QTK KL +S+ R+ V+ + Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPNPQFEGQTKTKLGNSDARTAVDRAFS 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK +Y+ +E L DYL S + + G + L ++ Sbjct: 555 YQVRQGKIEKYLDTDEELHDYLGTLQPSPKPVVQRYKGLGEMDPEQLWET--TMNPENRR 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + + + + +E A + N Sbjct: 613 LDRVSPEYAEDADKVFDLLMGNEVGPRREFIEKNAKYVEN 652 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 P+ G + + +++ + S+ ++ ++ ++ Sbjct: 348 HPNPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + + L D + K + Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKIEKYLDTDEELHDYLGTLQPSPKPV- 586 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRREFI++N Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKVFDLLMGNEVGPRREFIEKN 646 Query: 796 SLPS-ALD 802 + LD Sbjct: 647 AKYVENLD 654 >gi|299541761|ref|ZP_07052084.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1] gi|298725499|gb|EFI66140.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1] Length = 644 Score = 551 bits (1420), Expect = e-154, Method: Composition-based stats. Identities = 287/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ Sbjct: 9 EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ + V DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 68 DIKVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS +++ REG+I+E+ F G L+V G + GT F +IF Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFERGKTVQELMVIGDTDH-NGTTTRFKADPEIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + YD L HR+REL++LN ++I++ D+R E R T Y+GGI ++V +L++ K Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIKITIADEREEEIRSTTYHYEGGIRSYVEHLNQSKD 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + G +D I++++AM++N G+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 247 PIHDPID-VLGEKDGITVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y KS K+ ++ G+D REG T+++S+K PDP+F QTK KL +SEV + S + Sbjct: 306 DYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNSLFS 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 DG ++ E+P A+ IV+K L A+ R AA++AR+ TRRK L+++SLPGKLADCS + Sbjct: 366 DGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+LS+ EI +ITA Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR + LI G++YI +PPL Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y DEE+L++ L + G ++ L Sbjct: 545 YQVKQGKHIEYCYDEETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWE 593 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 66/87 (75%), Gaps = 2/87 (2%) Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L+ + + + ++QRYKGLGEMNA QLWETT++P+ R+LL+V++ DA +A+ Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWETTMDPEYRTLLQVELDDAIKANQA 617 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 F RLMGDEVEPRR+FI+EN++ + LDI Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644 >gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL] gi|81859679|sp|Q5HJZ1|GYRB_STAAC RecName: Full=DNA gyrase subunit B gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL] Length = 644 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 288/591 (48%), Positives = 395/591 (66%), Gaps = 6/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+A +KRP MYIG T E GLHH+++E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAARKRPGMYIGSTS-ERGLHHLVWEIVDNSIDEALAGYA 64 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 65 NQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 124 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 125 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 183 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 184 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 243 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S K++K + G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 304 LNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 363 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 364 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 423 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 424 KSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 483 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLLTFF+R M LI G++YI +P Sbjct: 484 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQP 542 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 543 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWE 593 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG 730 V + F + I + + + L K + LD + S Sbjct: 511 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSE- 568 Query: 731 RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDE 784 + S+ RYKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD Sbjct: 569 ---LNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDV 625 Query: 785 VEPRREFIQENSLPSALD 802 VE RR+FI++N++ + LD Sbjct: 626 VENRRQFIEDNAVYANLD 643 >gi|16803326|ref|NP_464811.1| DNA topoisomerase IV subunit B [Listeria monocytogenes EGD-e] gi|47097246|ref|ZP_00234807.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|224501769|ref|ZP_03670076.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-561] gi|254828649|ref|ZP_05233336.1| parE [Listeria monocytogenes FSL N3-165] gi|254829957|ref|ZP_05234612.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 10403S] gi|254898549|ref|ZP_05258473.1| DNA topoisomerase IV subunit B [Listeria monocytogenes J0161] gi|254911960|ref|ZP_05261972.1| DNA topoisomerase IV [Listeria monocytogenes J2818] gi|254936287|ref|ZP_05267984.1| parE [Listeria monocytogenes F6900] gi|284801671|ref|YP_003413536.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578] gi|284994813|ref|YP_003416581.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923] gi|21328242|gb|AAM48488.1|AF084044_1 DNA topoisomerase IV subunit B [Listeria monocytogenes] gi|16410702|emb|CAC99364.1| parE [Listeria monocytogenes EGD-e] gi|47014371|gb|EAL05343.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes str. 1/2a F6854] gi|258601049|gb|EEW14374.1| parE [Listeria monocytogenes FSL N3-165] gi|258608877|gb|EEW21485.1| parE [Listeria monocytogenes F6900] gi|284057233|gb|ADB68174.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5578] gi|284060280|gb|ADB71219.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 08-5923] gi|293589923|gb|EFF98257.1| DNA topoisomerase IV [Listeria monocytogenes J2818] Length = 655 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 261/658 (39%), Positives = 385/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHEDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNY+TL RLRE +FL + I LID+R ++ G++ FV Y++ K Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630 >gi|329666396|gb|AEB92344.1| DNA gyrase subunit B [Lactobacillus johnsonii DPC 6026] Length = 655 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 278/640 (43%), Positives = 405/640 (63%), Gaps = 7/640 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+A IQ+L GL+AV+KRP MYIG T + GLHH+++E++DN+IDE L G+A Sbjct: 17 EKRADTYNASQIQVLGGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNSIDERLAGFATK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 76 IEITVNEDGSVTVQDDGRGIPVDIQAKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L++ + R+G Y +SF +G + + G+ + GT V F P DIF Sbjct: 136 GASVVNALSTKLEVTVMRDGKKYAISFDHGRVVGEMKQVGTVPLEEHGTIVRFYPDPDIF 195 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + F+ L++R+REL+FLN ++++ DKR ++GGI+ +V++L++ ++ Sbjct: 196 TETITFDDKILKNRIRELAFLNKGLKLTFTDKRKESAETDVYHFEGGIKEYVAFLNKGQE 255 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI ++G+ + I +++A+++ +GY ++ F NNI +GG H +G ++ALTR + Sbjct: 256 VLFDEPIYVEGNYEGIDVEVALQYTNGYKTTLMTFANNIHTYEGGMHEAGFKTALTRVVN 315 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K ++ G+D REG T+V+S+K P P+F QTK KL +S+ R+ V+ + Sbjct: 316 DYAHKAKILKDKDDNLSGEDIREGITAVVSVKHPSPQFEGQTKTKLGNSDARTAVDRAFS 375 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + S +L E+P + IV+K A R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 376 ETFSRFLMENPSVGRKIVEKGQLAERARTAAKRAREVTRKKSGLEIANLPGKLADNTSND 435 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P SELF+VEG+SAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI +L TAL Sbjct: 436 PSISELFIVEGNSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRSLFTAL 495 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+ M +I G++YI +PPL Sbjct: 496 GTGFGAD-FDVSKARYHKLIIMTDADVDGAHIRTLLLTLFYNYMRPMIEKGYVYIARPPL 554 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKIDKL 600 Y + +GK +Y+ +E L DYL S + I G + L ++ Sbjct: 555 YQVRQGKVEKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWET--TMNPENRR 612 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLAN 640 + P + + + + +E A + N Sbjct: 613 LDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKNAKYVEN 652 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 123/368 (33%), Gaps = 33/368 (8%) Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVD--GAHIRTLLLTFFFRQ 524 ++ G + HK I+ D D + G IR + + Sbjct: 288 MTFANNIHTYEGGMHEAGFKTALTRVVNDYAHKAKILKDKDDNLSGEDIREGITAVVSVK 347 Query: 525 MPSLIHNGFLYI------IKPPLYGITRGKSLQYVKDEESLEDYLIN--------QSLSE 570 PS G + + +++ + S+ ++ ++ ++ Sbjct: 348 HPSPQFEGQTKTKLGNSDARTAVDRAFSETFSRFLMENPSVGRKIVEKGQLAERARTAAK 407 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF----------YPNHDKTFIEQAVI-- 618 K + +L + D D I + ++ + QA++ Sbjct: 408 RAREVTRKKSGLEIANLPGKLADNTSNDPSISELFIVEGNSAGGSAKQGRSRLTQAILPI 467 Query: 619 -SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVL 677 + N E + ++ + + + S L+ V + Sbjct: 468 RGKILNVEKASMDRILANQEIRSLFTALGTGFGADFDVSKARYHKLIIMTDADVDGAHIR 527 Query: 678 EGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI--FSIGRKGIS 735 + I + + + + + L D + K I Sbjct: 528 TLLLTLFYNYMRPMIEKGYVYIARPPLYQVRQGKVEKYLDTDEELHDYLGTLQPSPKPI- 586 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV A AD +F LMG+EV PRREFI++N Sbjct: 587 VQRYKGLGEMDPEQLWETTMNPENRRLDRVSPEYAEDADKIFDLLMGNEVGPRREFIEKN 646 Query: 796 SLPS-ALD 802 + LD Sbjct: 647 AKYVENLD 654 >gi|313638149|gb|EFS03407.1| DNA topoisomerase IV, B subunit [Listeria seeligeri FSL S4-171] Length = 655 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 264/658 (40%), Positives = 387/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GLDAV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNDYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I REG YE F N G + L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINREGATYEQRFKNGGKPNGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL RLRE +FL + I LID+R E + ++ G++ FV Y++ K Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MEESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRVFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDTARAERRVATLMGDKVEPRRKWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + N D +V + F + + + ++ + + K Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDT 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630 >gi|315302927|ref|ZP_07873658.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596] gi|313628700|gb|EFR97102.1| DNA topoisomerase IV, B subunit [Listeria ivanovii FSL F6-596] Length = 655 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 264/658 (40%), Positives = 387/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GLDAV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL+ DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHDDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I REG YE F N G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINREGATYEQRFKNGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 +NY+TL RLRE +FL + I LID+R + ++ G++ FV Y++ K Sbjct: 178 PTTSYNYETLSERLRESAFLLKGMLIQLIDERVG--MAESFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ ++++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKEKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDTARAERRVATLMGDKVEPRRKWIEKHVEFSMEDNQNILENENMMVEE 651 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 + N D +V + F + + + ++ + + K Sbjct: 487 VADCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDT 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRKWIEKH 630 >gi|50953931|ref|YP_061219.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950413|gb|AAT88114.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07] Length = 663 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 263/594 (44%), Positives = 370/594 (62%), Gaps = 18/594 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DN++DE+L GYAD I Sbjct: 10 AEHDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYADNIE 68 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V + DGS V DNGRGIP D H + S EV++T LHAGGKF Y VSGGLHGVG Sbjct: 69 VMILPDGSVRVFDNGRGIPVDEHPVQKKSTVEVVLTILHAGGKFGGGGYAVSGGLHGVGS 128 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ L + ++R+G+++ S+ NG+ PL G TGT + F PS + F Sbjct: 129 SVVNALSTRLDVEVRRQGHVWRQSYRNGVPQAPLEQ-GEETEATGTTIVFWPSPETFETV 187 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------EPREITMFYKGGIEAFVSY 235 +F+YDTL+ R ++++FLN ++I++ D+R EPR Y+ G+ +V Y Sbjct: 188 EFDYDTLRTRFQQMAFLNKGLRIAIADQRPVSAEGEADEESEPRGEVFLYEKGLTDYVHY 247 Query: 236 LDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 L+ KK I + I++++AM+W Y+E+V + N I +GGTH G Sbjct: 248 LNAAKKAEVVHDEIISFELEDTDRKIALEVAMQWTTSYNESVFTYANTINTHEGGTHEEG 307 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 R+ALT + Y + K ++ GDD REG T+V+S+K+ +P+F QTK KL ++E Sbjct: 308 FRAALTSLVNRYAREKNILKDKDDNLSGDDVREGLTAVISVKLSEPQFEGQTKTKLGNTE 367 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 ++ V+ D L+ W + +P +AK I++K L A+ R AAR+AR+ RRKG+L+ +P Sbjct: 368 AKAFVQKVAGDQLADWFDRNPNQAKEIIRKALQAATARIAARKARETARRKGLLESGGMP 427 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKL DC +DP SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L++ Sbjct: 428 GKLKDCQSKDPTLSEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALAN 487 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 E+ +ITA G GIG+D FD K RYHKI++M DADVDG HI TLLLT FR M LI Sbjct: 488 NEVQAMITAFGAGIGED-FDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIEL 546 Query: 532 GFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 G++Y+ +PPLY + +YV + + +L + + + Sbjct: 547 GYVYLAQPPLYRLKWSNADDEYVYSDRDRDAFLAEGLAAGKRIPKDNGVQRYKG 600 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT+NP+TR+LL+V + DA+ D++F+ LMG++VE RR FIQ+N Sbjct: 595 VQRYKGLGEMDYKELWETTMNPETRTLLQVTLDDAAAVDEIFTTLMGEDVESRRSFIQKN 654 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 655 AKDVRFLDI 663 >gi|306827498|ref|ZP_07460781.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes ATCC 10782] gi|304430296|gb|EFM33322.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Streptococcus pyogenes ATCC 10782] Length = 650 Score = 551 bits (1419), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +V+S Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 143 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 10/260 (3%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 382 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINY 501 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----DKIK 715 D ++ + + + +F +Y R L L + G +KI Sbjct: 502 DKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTEKIA 559 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 560 YAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAER 619 Query: 776 LFSRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 620 RVSVLMGDKAAPRRQWIEDN 639 >gi|251782581|ref|YP_002996884.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391211|dbj|BAH81670.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 650 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIRVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDHDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +V+S Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGSD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKVSYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 382 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 441 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I ++ N Sbjct: 442 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGSDFNLEDINY 501 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 D ++ + F + + + + + + K + Sbjct: 502 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKVSYA 561 Query: 721 ---SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 562 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 621 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 622 SVLMGDKAAPRRQWIEDN 639 >gi|156888559|gb|ABU96684.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 272/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIRVVINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 600 DPETRTLIRVTIDDLARAERR 620 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712 N D ++ + + + +F +Y R L L + G + Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 KI L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++ Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMGD+ PRR++I++N Sbjct: 617 AERRVSVLMGDKAAPRRQWIEDN 639 >gi|329938633|ref|ZP_08288029.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045] gi|329302124|gb|EGG46016.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045] Length = 691 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 287/658 (43%), Positives = 395/658 (60%), Gaps = 22/658 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + +YDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 35 SPAYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 93 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 94 TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 153 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + ++ +G + + G+ PL V A +TGT VTF DIF + Sbjct: 154 VVNALSTKVAVEVRTDGYRWTQDYKLGVPTAPL-VKNEATEETGTSVTFWADGDIFETTE 212 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230 ++++TL R +E++FLN + I L D+R E + +T Y+GGI Sbjct: 213 YSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADEKEEVKSVTYHYEGGIV 272 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + S I I+ +S+++AM+WN+GY E V F N I +GGT Sbjct: 273 DFVKYLNARKGEIVHPSVIDIEAEDKDRMLSLEVAMQWNNGYSEGVYSFANTIHTHEGGT 332 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F QTK KL Sbjct: 333 HEEGFRAALTGLINRYARDKKLLREKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKL 392 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V++ L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 393 GNTEAKTFVQKVVHEHLTDWLDRNPNEAADIIRKSIQAATARVAARKARDLTRRKGLLES 452 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR DK Sbjct: 453 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDK 512 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 513 ILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 571 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPL+ I G+ + D LI + + DS Sbjct: 572 LVEAGHVFLSRPPLFKIKWGRDDFEYAYSDRERDALIELGRNNGKRVRDDSIQRFKGLGE 631 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E + + A + F+ Sbjct: 632 MNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRAFIQRNAKDVRFL 689 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR + S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 605 DALIELGRNNGKRVRDDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 664 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 665 SVLMGEDVEARRAFIQRNAKDVRFLDI 691 >gi|300172307|ref|YP_003771472.1| DNA gyrase subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299886685|emb|CBL90653.1| DNA gyrase, B subunit [Leuconostoc gasicomitatum LMG 18811] Length = 669 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 277/572 (48%), Positives = 384/572 (67%), Gaps = 6/572 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 27 TVNASAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 85 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G SA E + T LHAGGKF YKVSGGLH Sbjct: 86 SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKSALETVFTVLHAGGKFGGGGYKVSGGLH 145 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 GVG SVVNALS+ L +R+ R+ +Y M F G ++ +V D GT V F P SD Sbjct: 146 GVGASVVNALSTNLDVRVIRDNQVYYMDFKLGRVNTSIVKLDEKPTIDRGTIVHFNPDSD 205 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FNY+TL R+REL+FLN ++IS+ D R P + ++GGI+ +V YL+ Sbjct: 206 IFRETTTFNYNTLLTRVRELAFLNKGLRISITDNRLEVPATESFHFEGGIKEYVGYLNSE 265 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + P+ ++G + I ++ A+++ +++ F NNI +GGTH +G ++ALTR Sbjct: 266 KTVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 325 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K+ K + S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 326 INDYGRKNGQLKDNAESLTGEDVREGVTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 385 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P+ AK IV K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 386 FSETFSRFMMENPIVAKQIVDKGILAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 445 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNVE+A D++L ++EI +L T Sbjct: 446 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVEKATLDRVLGNEEIRSLFT 505 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ G++YI +P Sbjct: 506 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 564 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLS 569 PLYG+ K+ +Y+ +E LE YL + Sbjct: 565 PLYGVALGNSKTREYLDTDEELEAYLTQLPSN 596 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++P R LLRV +DA AD +F LMGD+V PRREFI+EN Sbjct: 601 VQRYKGLGEMDFDQLADTTMDPINRRLLRVDPSDAEAADSIFDMLMGDDVAPRREFIEEN 660 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 661 AVFVENLDI 669 >gi|312137523|ref|YP_004004859.1| DNA gyrase subunit b [Rhodococcus equi 103S] gi|311886862|emb|CBH46170.1| DNA gyrase subunit B [Rhodococcus equi 103S] Length = 678 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 253/582 (43%), Positives = 358/582 (61%), Gaps = 39/582 (6%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+ + ++++Y A SI +L+GL+AV+KRP MYIG T GE GLHH+I+EV+DN++DE++ Sbjct: 1 MAAQKSDKSNTYGASSITVLEGLEAVRKRPGMYIGST-GERGLHHLIWEVVDNSVDEAMA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GYA + VT+ DG V D+GRGIP +H G EV+MT+LHAGGKF+ +Y VSG Sbjct: 60 GYASKVEVTMLEDGGIQVVDDGRGIPVAMHAS-GAPTVEVVMTQLHAGGKFDSDAYAVSG 118 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVG+SVVNALS+ +++ I +G + ++ + PL V G +TGT V F Sbjct: 119 GLHGVGISVVNALSTKVEVDINVDGYRWSQTYEHAKP-GPL-VQGEPTTETGTTVRFWAD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT---------------- 222 +IF +N++T+ RL+E++FLN + I+L D+R E Sbjct: 177 PEIFETTTYNFETVARRLQEMAFLNKGLTITLTDERVAEDEVTEDVVPVTAEAPKTATET 236 Query: 223 ----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 Y GG+E +V +++R K+ + S + +++AM+WN Sbjct: 237 EEEAAAPKAPKVKSRVYHYPGGLEDYVRFINRTKQAIHNSVVGFTAKGTGHELEIAMQWN 296 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G R+ALT + Y + K + GDD REG Sbjct: 297 SGYSESVHTFANTINTHEGGTHEEGFRAALTSVVKKYAKDKKLVKDKDPELTGDDIREGL 356 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +++S+K+ +P+F QTK KL ++EV+S V+ N+ ++ W E +P +AK IV K + ++ Sbjct: 357 AAIISVKVAEPQFEGQTKTKLGNTEVKSFVQKACNENIAHWFEANPADAKTIVTKAVSSA 416 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK DI LPGKLADC DP K E+++VEGDSAGGSAK GR Sbjct: 417 QARTAARKARELVRRKSATDIGGLPGKLADCRSNDPSKCEIYIVEGDSAGGSAKSGRDSM 476 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILPLRGKI+NVE+AR D++L + E+ ++ITA GTGI + KLRYHKI++M DA Sbjct: 477 YQAILPLRGKIINVEKARIDRVLKNAEVQSIITAFGTGIHDEFDIC-KLRYHKIVLMADA 535 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGK 548 DVDG HI TLLLT FR M L+ G +Y+ +PPLY + K Sbjct: 536 DVDGQHIATLLLTLLFRFMRPLVEQGHVYLAQPPLYKLKWQK 577 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+ + G+K I+ +QRYKGLGEMNA +LWETT++P R L +V + DA+ AD+LF Sbjct: 593 LLEAGLAAGKK-INKDDGIQRYKGLGEMNAKELWETTMDPSVRVLRQVTLDDAAAADELF 651 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FI N+ LD+ Sbjct: 652 SVLMGEDVEARRSFITRNAKDVRFLDV 678 >gi|315194271|gb|EFU24664.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus CGS00] Length = 665 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 265/598 (44%), Positives = 370/598 (61%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I + G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIRAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIRAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|156888561|gb|ABU96685.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] gi|156889070|gb|ABU96686.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp. equisimilis] Length = 641 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 272/621 (43%), Positives = 391/621 (62%), Gaps = 18/621 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIRVVINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG +++LSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAILSILVPEQHLQFEGQTKDKLGSPLARPIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDK 610 + I I D + Sbjct: 600 DPETRTLIRVTIDDLARAERR 620 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712 N D ++ + + + +F +Y R L L + G + Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 KI L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++ Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMGD+ PRR++I++N Sbjct: 617 AERRVSVLMGDKAAPRRKWIEDN 639 >gi|184153407|ref|YP_001841748.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri JCM 1112] gi|183224751|dbj|BAG25268.1| topoisomerase IV B subunit [Lactobacillus reuteri JCM 1112] Length = 669 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 259/599 (43%), Positives = 369/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKEEVK--YDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I + + D + TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINIIIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS L L I R+ Y+ F + G L G + GT V+F P Sbjct: 117 LHGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y+TL +RLRE +FL ++I+L DKR+ + ++ + GI+ FVSYL+ Sbjct: 177 PKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K ++ + G +D + +++A ++NDGY E++L F NN+ DGGTH +G RSA T+ Sbjct: 237 G-KDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y +K K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V Sbjct: 296 TFNEYAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 ++ V++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 356 DAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ Sbjct: 416 TPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKI 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY + R ++ Y E L G ++ + L Sbjct: 535 YIALPPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 592 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 378 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + ++ +N Sbjct: 438 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + +I + L G K IT Sbjct: 498 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QR+KGLGEMNA QLWETT+NPDTR+L++V+I DA A+ Sbjct: 558 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPDTRTLIQVRIEDAELAERRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 618 TTLMGNKVEPRREWIEEN 635 >gi|81427621|ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609260|emb|CAI54307.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K] Length = 658 Score = 550 bits (1418), Expect = e-154, Method: Composition-based stats. Identities = 283/638 (44%), Positives = 410/638 (64%), Gaps = 10/638 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + SYDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 16 AKEERAKSYDASQIQVLEGLEAVRKRPGMYIGTTSSQ-GLHHLVWEIIDNGIDEALAGFA 74 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V + D S TV+D+GRGIP + + G SA E + T LHAGGKF YKVSGGLH Sbjct: 75 TEINVVVEPDNSITVTDDGRGIPVGIQAKTGKSALETVFTILHAGGKFGGGGYKVSGGLH 134 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSD 180 GVG SVVNALS+ L + + G Y + F G + P+ + G A ++ GT+V F+P D Sbjct: 135 GVGASVVNALSTELDAVVTQGGKRYYIDFKRGKVQTPMKMIGDAPEHEHGTKVHFVPDPD 194 Query: 181 IFSVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ D L R+REL+FLN ++++ DKR+ ++ Y+GGI+++V +LD Sbjct: 195 IFTETTIYDDKILTTRIRELAFLNKGLKLTFTDKRADTHEKLEFHYEGGIKSYVEFLDEK 254 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L+ PI ++G ++ I++++A+++ + Y N+L F NNI +GGTH SG ++ALTR Sbjct: 255 KETLLDEPIYVEGEQNGITVEVALQYTNDYRTNLLTFANNIHTYEGGTHESGFKTALTRV 314 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y K K ++ G+D REG T+V+S+K PDP+F QTK KL +++ RSV + Sbjct: 315 INDYATKQNIFKASDANLSGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNADARSVTDRM 374 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 +D + +L E+P A+ IV K A+ R AA+RAR++TR+K L+I++LPGKLAD S Sbjct: 375 FSDHFTKFLMENPSIARQIVDKGSLAARARLAAKRAREVTRKKNGLEISNLPGKLADNSS 434 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +DP+ SELF+VEGDSAGGSAK GRSR QAILP+RGKILNVE+A +K+L+++EI TL T Sbjct: 435 KDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMEKILANEEIRTLFT 494 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG GQ+ FD+ K RYHK+IIMTDADVDGAHIRTLLLT F+R M ++ G++YI +P Sbjct: 495 AMGTGFGQE-FDVEKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQP 553 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKID 598 PLY + +GK ++Y+ +E L+D L S + G + + L +D Sbjct: 554 PLYRVKQGKMMRYIDSDEELQDVLGTLQPSPKPEVQRYKGLGEMDASQLWET-----TMD 608 Query: 599 KLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + + + E I + + + + + Sbjct: 609 PENRRMLRVNVEDAEEADQIFEMLMGDRVEPRRLFIEE 646 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 76/180 (42%), Gaps = 7/180 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + ++ + + + L+ V + + Sbjct: 472 ILNVEKASMEKILANEEIRTLFTAMGTGFGQEFDVEKARYHKLIIMTDADVDGAHI--RT 529 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTI--FSIGRKGISM 736 + + +Y R K I L D + K + Sbjct: 530 LLLTLFYRYMRPIVEAGYVYIAQPPLYRVKQGKMMRYIDSDEELQDVLGTLQPSPK-PEV 588 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEM+ASQLWETT++P+ R +LRV + DA +AD +F LMGD VEPRR FI+EN+ Sbjct: 589 QRYKGLGEMDASQLWETTMDPENRRMLRVNVEDAEEADQIFEMLMGDRVEPRRLFIEENA 648 >gi|31544928|ref|NP_853506.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)] gi|33860162|sp|P47720|GYRB_MYCGA RecName: Full=DNA gyrase subunit B gi|31541775|gb|AAP57074.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(low)] gi|284931006|gb|ADC30945.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. R(high)] Length = 648 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 240/598 (40%), Positives = 359/598 (60%), Gaps = 14/598 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N + Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TL + V D+GRGIP D+H++ S E ++T LHAGGKF+ +Y +SGGLHG Sbjct: 61 TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS K+ + R+ I+ + F + G+ PL + G+ GT + F+P I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDSKKQGTRIQFVPDFSI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++ + R+ +L+FLN ++ D+R+ + + Y+GGI+ +V L+ K+ Sbjct: 181 MEQFEYDETIIADRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240 Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 P++ I + + +++A ++ +GY+ + F NNI GGTH G Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ++AL + I Y + K+ + +D EG T+++SIK +P++ QTK++L ++E Sbjct: 301 FKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 360 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR S V++ L + E+P EA I K + A R + A + RK + ASLP Sbjct: 361 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC+ +D + SEL++VEGDSAGGSAK GR R QAILPLRGK+LNVE+A +K+ + Sbjct: 420 GKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI TLITA+G G+ F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M LI Sbjct: 480 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY ++ K +Y+ + LE++ G + L Sbjct: 539 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 596 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 5/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678 V N E + ++ + I + + ++ V +L Sbjct: 465 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 524 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + F I + L +S I L + +QR Sbjct: 525 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P+ R+LL+V I DA+ AD FS LMGDEV PRR+FI++N+ Sbjct: 583 YKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 642 Query: 799 S-ALD 802 +D Sbjct: 643 VKNID 647 >gi|46907513|ref|YP_013902.1| DNA topoisomerase IV subunit B [Listeria monocytogenes serotype 4b str. F2365] gi|217964571|ref|YP_002350249.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23] gi|226223889|ref|YP_002757996.1| DNA gyrase-like protein (subunit B) [Listeria monocytogenes Clip81459] gi|254824653|ref|ZP_05229654.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194] gi|254852660|ref|ZP_05242008.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503] gi|254932397|ref|ZP_05265756.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262] gi|254993571|ref|ZP_05275761.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-064] gi|255520561|ref|ZP_05387798.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-175] gi|300765323|ref|ZP_07075307.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017] gi|46880781|gb|AAT04079.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes serotype 4b str. F2365] gi|217333841|gb|ACK39635.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes HCC23] gi|225876351|emb|CAS05060.1| Putative DNA gyrase-like protein (subunit B) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605977|gb|EEW18585.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL R2-503] gi|293583953|gb|EFF95985.1| DNA topoisomerase IV subunit B [Listeria monocytogenes HPB2262] gi|293593891|gb|EFG01652.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J1-194] gi|300514006|gb|EFK41069.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes FSL N1-017] gi|307570865|emb|CAR84044.1| DNA topoisomerase IV, B subunit [Listeria monocytogenes L99] gi|328468575|gb|EGF39575.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 1816] gi|328475129|gb|EGF45913.1| DNA topoisomerase IV subunit B [Listeria monocytogenes 220] gi|332311731|gb|EGJ24826.1| DNA topoisomerase 4 subunit B [Listeria monocytogenes str. Scott A] Length = 655 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 261/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL++DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHVDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNY+TL RLRE +FL + I LID+R ++ G++ FV Y++ K Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630 >gi|49486197|ref|YP_043418.1| DNA topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MSSA476] gi|49244640|emb|CAG43071.1| topoisomerase IV subunit B [Staphylococcus aureus subsp. aureus MSSA476] Length = 665 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 265/598 (44%), Positives = 371/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + ++R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|118586892|ref|ZP_01544326.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163] gi|118432724|gb|EAV39456.1| DNA topoisomerase IV, B subunit [Oenococcus oeni ATCC BAA-1163] Length = 674 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 260/670 (38%), Positives = 377/670 (56%), Gaps = 14/670 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + SY+ I+IL+GL+AV+ RP MYIG TD GLHH+++E++DNA+DE L GY Sbjct: 8 MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV D+GRG+P +H G EVI+T LHAGGKF Q YK +GGL Sbjct: 66 GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L + I R+G Y +F N G L G + TGT +TF P Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + + T+ RLRE +FL ++I+LID+R YK GI+ FV YL+ Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNEG 244 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ + G + I +++A ++NDGY E +L F NN+ DGGTH +G++ A T+ Sbjct: 245 -KAVIGKVMYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K+ K+ + G D REG + V+++++P+ +F QTKEKL + E RS V Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415 S + + L +L E+ A+ +V+K L A R AAR+ARD +R GKL Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEFLLSGKLT 423 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A +++L ++EI Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F+I Y+K+IIMTDAD DGAHI+TLLLTFF++ M L+ G +Y Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542 Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++ E L + + I + + + + Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTM 602 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 D + +K + + + V E NV+ + A + ++ Sbjct: 603 DPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDEAGSILDTVNGNDG 662 Query: 652 SWHGSINNSD 661 ++H ++ + Sbjct: 663 TYHPELDKKE 672 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 57/87 (65%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K + L + +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615 Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795 DA+ A+ + LMGD+V PRR++I++N Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642 >gi|21910160|ref|NP_664428.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315] gi|21904353|gb|AAM79231.1| putative DNA topoisomerase IV subunit B [Streptococcus pyogenes MGAS315] Length = 650 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 273/647 (42%), Positives = 398/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G++Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGSVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +V+S Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPIVDS 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVETGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 106/263 (40%), Gaps = 10/263 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIE-ENYLTILSLICNG----D 712 N D ++ + + + +F +Y R L L + G + Sbjct: 499 INYDKIIIMTDADTDGAHI--QTLLLTFFYRYMRPLVETGHVYIALPPLYKMSKGKGKTE 556 Query: 713 KIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 KI L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++ Sbjct: 557 KIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLAR 616 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMGD+ PRR++I++N Sbjct: 617 AERRVSVLMGDKAAPRRQWIEDN 639 >gi|225570591|ref|ZP_03779616.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM 15053] gi|225160604|gb|EEG73223.1| hypothetical protein CLOHYLEM_06693 [Clostridium hylemonae DSM 15053] Length = 650 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 250/620 (40%), Positives = 357/620 (57%), Gaps = 12/620 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YDADSI IL+GL+AV+KRP MYIG GL+H+IYE++DNA+DE L G D I Sbjct: 13 KKNTYDADSISILEGLEAVRKRPGMYIGSVS-TKGLNHLIYEIVDNAVDEHLAGCCDEIR 71 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VTL DGS TVSDNGRG+P LH + G+SA ++ T LHAGGKF+ SYK SGGLHGVG Sbjct: 72 VTLEKDGSATVSDNGRGVPVGLHAK-GVSAERIVYTTLHAGGKFDDSSYKTSGGLHGVGS 130 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSDI 181 SVVNALS+++ +++ REG I+ + G L TGT++ FLP I Sbjct: 131 SVVNALSAYMDVQVSREGYIHHDRYERGKPVIELEDGLLPKTGKTKKTGTKINFLPDDTI 190 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F D ++ R+ E ++LN ++ I D R P I GI F+ L++ + Sbjct: 191 FEKTRFRADEVKSRMHETAYLNPTLTIIFEDLRGETPERIVYHEPDGILGFIKELNQKNE 250 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + P+ +G + I ++ A ++ + +HENVL F NNI +GGTHL+G ++ T + Sbjct: 251 AVH-EPVYFKGVAEGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMN 309 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y + K+ + G D R G T+++SIK PDPRF QTK KL + + V N Sbjct: 310 QYARELGILKEKDANFTGADIRNGMTAIVSIKHPDPRFEGQTKTKLDNPDAAKAVSKVTN 369 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D ++ + + + K ++ A+ +R +A+ K S GKLA+C RD Sbjct: 370 DEITRYFDRNLDNLKKVIACAEKAAKIRKTEEKAKTNLLTKQKYSFDS-NGKLANCESRD 428 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 + E+F+VEGDSAGGSAK R R QAILP+RGKILNVE+A DK+L++ EI T+I A Sbjct: 429 ASRCEIFIVEGDSAGGSAKTARDRMFQAILPIRGKILNVEKASIDKILANAEIKTMINAF 488 Query: 482 GTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 G G + + FDI+ LRY KIIIM DADVDGAHI TLLLT F+R MP LI+ G +Y+ Sbjct: 489 GCGFSEGYGNDFDISGLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYVAM 548 Query: 539 PPLYG-ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY I + +Y+ D+++LE Y ++ + + ++ ++ ++ Sbjct: 549 PPLYKAIPKKGEEEYLYDDKALERYRRKHDGPFTLQRYKGLGEMDAQQLWETTLNPETRL 608 Query: 598 DKLIKDFYPNHDKTFIEQAV 617 K I+ E + Sbjct: 609 LKRIEIEDARMASGVTEMLM 628 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 51/69 (73%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A QLWETTLNP+TR L R++I DA A + LMG EV PRR FI E Sbjct: 582 TLQRYKGLGEMDAQQLWETTLNPETRLLKRIEIEDARMASGVTEMLMGTEVPPRRTFIYE 641 Query: 795 NSLPSALDI 803 N+ + LDI Sbjct: 642 NATEAELDI 650 >gi|50365125|ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1] gi|50363681|gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1] Length = 647 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 245/601 (40%), Positives = 361/601 (60%), Gaps = 15/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ ++ YD +IQ+L+GL+AV+KRP MYIG TD GLHH+++E++DN+IDE+L GY Sbjct: 1 MAKEVK---YDESAIQVLEGLEAVRKRPGMYIGSTD-VRGLHHLVWEIVDNSIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL +GS TV+DNGRG+P +H G EVI + LHAGGKF YK SGGL Sbjct: 57 CTEINVTLEKNGSVTVADNGRGVPIGMHS-TGRPTPEVIFSVLHAGGKFGGSGYKTSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS + I R+ + E+ F NG N PL G N TGT V FLP Sbjct: 116 HGVGSSVVNALSKKFNVTIYRDKKVNEIEFTNGGKLNIPLTEVG-TTNKTGTVVNFLPDD 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF+ FN+ T+ RL+E + LNS ++I++ DK + + E + G+ FV L Sbjct: 175 SIFNTTKFNFTTISERLKESALLNSGLKITISDKVNDKFVEYQF--ENGLVEFVKELSSE 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 + P+ I G I+ ++ +++ + ++E +L F NN+ DGGTH++G ++ L R Sbjct: 233 FT-HITDPVVITGESKRIASEICIQYTEDFNETILGFANNVKTGDGGTHITGFKTGLVRA 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 I Y + + K + +D REG +++++K+P+ + QTK KL + + ++ VE Sbjct: 292 INDYAKNNKILKDKDPRLDSNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKTAVE 351 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLAD 416 D ++ WL E+ + A I++K + A R+ AR+AR R KG ++ GKL Sbjct: 352 QVTYDFMNFWLIENKVPATKIIEKAMLARRAREEARKARQAIRDSKGKKTTRAMLGKLTP 411 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R + +EL+LVEGDSAGGSAK GR R QAILPLRGK++N E+A+ +++ ++EI T Sbjct: 412 AQGRKKEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQT 471 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +ITA+G GIG FD++ + Y K+IIMTDAD DGAHI+TLLLTFF+R M LI N ++I Sbjct: 472 IITAIGAGIG-QDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFI 530 Query: 537 IKPPLYGI-TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PPLY + + Y+ DE+ L D+ + EI+ + + + ++ A Sbjct: 531 ALPPLYKLTFSDRKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQLWETTMNPAQ 590 Query: 596 K 596 + Sbjct: 591 R 591 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 3/210 (1%) Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645 I++ ++ + QA++ V N E + + ++ + I Sbjct: 417 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLTELMKNEEIQTIITAI 476 Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 + + S N ++ + F + I + + + Sbjct: 477 GAGIGQDFDVSDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 536 Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 L + K L K +QRYKGLGEMNA QLWETT+NP R L+ V Sbjct: 537 KLTFSDRKFIYLWDEQELADFAKTATKKYEIQRYKGLGEMNADQLWETTMNPAQRKLIVV 596 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQEN 795 I DA A+ F LMG++ E R+ +IQEN Sbjct: 597 TIEDALMAEKSFRTLMGEDAEKRKVWIQEN 626 >gi|195977899|ref|YP_002123143.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974604|gb|ACG62130.1| DNA gyrase subunit B GyrB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 650 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 401/628 (63%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M + + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MVEENKQLEDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIQVFIEADNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ + G+I+ F G + + L + + TGT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAII-GTTDVTGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F+Y L R++EL+FLN ++IS+ DKR+ RE Y+GGI ++V+ Sbjct: 179 TPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLEREEHFHYEGGIGSYVA 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + +PI G + I++++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 FLNDKKDVIFDTPIYSDGELEGITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ L +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G D FD+++ RY K++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAD-FDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + + + E S+ I + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEELKAALERHSTGRSRPTIQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPDNRLMARVTVDDAAEADRI 623 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 58/74 (78%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++PD R + RV + DA++AD +F LMGD VEPRR Sbjct: 577 GRSRPTIQRYKGLGEMDDHQLWETTMDPDNRLMARVTVDDAAEADRIFDMLMGDRVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|139473931|ref|YP_001128647.1| DNA topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo] gi|134272178|emb|CAM30423.1| topoisomerase IV subunit B [Streptococcus pyogenes str. Manfredo] Length = 650 Score = 549 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 274/647 (42%), Positives = 397/647 (61%), Gaps = 18/647 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 I ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G+ D Sbjct: 5 KEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSGFGD 63 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGGLHG Sbjct: 64 DIKVVINKDGSVSVADSGRGMPTGQHA-MGIPTVQVIFTILHAGGKFGQGGYKTSGGLHG 122 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSD 180 VG SVVNALS+WL++ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 123 VGSSVVNALSAWLEVEITRDGAVYRQRFENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDK 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IFS DF ++T+ RL+E +FL +V++SL D R +P Y+ G++ FV YL+ K Sbjct: 183 IFSTIDFKFNTISERLKESAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDK 242 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T+ + Sbjct: 243 ETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKAM 301 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVES 358 Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R +VES Sbjct: 302 NDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARHIVES 361 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLAD 416 V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GKL Sbjct: 362 IVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTP 421 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI T Sbjct: 422 AQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINT 481 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 ++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI Sbjct: 482 MVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYI 540 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI- 591 PPLY ++ + + + Y + LED I G ++ N L Sbjct: 541 ALPPLYKMSKGKGKTEKIAYAWTDGELEDLRREFG-KGAILQRYKGLGEMNANQLWETTM 599 Query: 592 --DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 600 DPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 646 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 104/262 (39%), Gaps = 8/262 (3%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + + + ++ + + S + ++ ++ Sbjct: 379 SHLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGD 438 Query: 601 IKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 + QA++ V N E + ++ ++ + I ++ Sbjct: 439 SAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLED 498 Query: 658 NNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG----DK 713 N D ++ + F + + + + L L + G +K Sbjct: 499 INYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVY-IALPPLYKMSKGKGKTEK 557 Query: 714 IKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 I L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A Sbjct: 558 IAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARA 617 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + S LMGD+ PRR++I++N Sbjct: 618 ERRVSVLMGDKAAPRRQWIEDN 639 >gi|313664969|ref|YP_004046840.1| DNA gyrase, B subunit [Mycoplasma leachii PG50] gi|312949334|gb|ADR23930.1| DNA gyrase, B subunit [Mycoplasma leachii PG50] Length = 634 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 246/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + + DNGRGIP ++ + SA ++ T+LHAGGKF+ ++YK+SGGLHGVG S Sbjct: 61 TITKENEVIIQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGQT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + +NI +++A+++N Y EN++ F NNI +GGTH GL+ AL R I Y Sbjct: 238 PNIFYVDSKYENIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA+RAR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADCETKDSNI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI +++TA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIVTAVGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDNQLDELKNNEFNN 561 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + + ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIVTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI + LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDNQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|225868765|ref|YP_002744713.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus] gi|225870279|ref|YP_002746226.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047] gi|225699683|emb|CAW93393.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047] gi|225702041|emb|CAW99644.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus] Length = 650 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 275/628 (43%), Positives = 401/628 (63%), Gaps = 11/628 (1%) Query: 1 MSDNIQN-----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M + + YDA IQ+L+GL+AV+ RP MYIG T E GLHH+++E++DN+IDE Sbjct: 1 MVEENKQLEDKAQEYDASQIQVLEGLEAVRMRPGMYIGSTAKE-GLHHLVWEIVDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 +L G+A I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YK Sbjct: 60 ALAGFASHIQVFIEADNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYK 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 VSGGLHGVG SVVNALS+ L +R+ + G+I+ F G + + L + + TGT V F Sbjct: 120 VSGGLHGVGSSVVNALSTQLDVRVYKNGHIHYQEFRRGAVVDDLAII-GTTDVTGTTVHF 178 Query: 176 LPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 P +IF+ F+Y L R++EL+FLN ++IS+ DKR+ RE Y+GGI ++V+ Sbjct: 179 TPDPEIFTETTEFDYQVLAKRIQELAFLNRGLKISITDKRAGLEREEHFHYEGGIGSYVA 238 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 +L+ K + +PI G + I++++AM++ GYHE V+ F NNI +GGTH G R+ Sbjct: 239 FLNDKKDVIFDTPIYSDGELEGITVEVAMQYTTGYHETVMSFANNIHTHEGGTHEQGFRT 298 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALTR I Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV Sbjct: 299 ALTRVINDYAKKAKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVK 358 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 + ++ L +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKL Sbjct: 359 ITNRLFSEALQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKL 418 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADCS D ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI Sbjct: 419 ADCSSNDASQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEI 478 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L TA+GTG G + FD+++ RY K++IMTDADVDGAHIRTLLLT +R M ++ G++ Sbjct: 479 RSLFTAMGTGFGAE-FDVSRARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYV 537 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI +PP+YG+ G ++ + + + E S+ I + +DD Sbjct: 538 YIAQPPIYGVKVGSEIKEYI--QPGVNQEEELKAALERHSTGRSRPTIQRYKGLGEMDDH 595 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + + ++ A + Sbjct: 596 QLWETTMDPDNRLMARVTVDDAAEADRI 623 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 45/74 (60%), Positives = 58/74 (78%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 GR ++QRYKGLGEM+ QLWETT++PD R + RV + DA++AD +F LMGD VEPRR Sbjct: 577 GRSRPTIQRYKGLGEMDDHQLWETTMDPDNRLMARVTVDDAAEADRIFDMLMGDRVEPRR 636 Query: 790 EFIQENSLPSALDI 803 EFI+EN++ S LDI Sbjct: 637 EFIEENAVYSTLDI 650 >gi|228476082|ref|ZP_04060790.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119] gi|228269905|gb|EEK11385.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis SK119] Length = 666 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 260/599 (43%), Positives = 369/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + + Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MATKM-TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N D S +V DNGRG+PT +H G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINEDNSISVEDNGRGMPTGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G IY+ SF + GI + L+ G P S Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTF-KPDS 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF FN+DTL RL+E +FL +++I+L D R + RE Y+ GI+ FVSY++ Sbjct: 177 SIFKATTSFNFDTLSERLQESAFLLKNLKITLKDLRDGKEREDVYHYEEGIKEFVSYINE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G+ + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTTFTGAANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNDYARRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + + ++EI Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G D F + Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGND-FKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + + K ++Y ++ LE I G ++ L Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 540 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV+I D ++ + LMGD+V PRRE+I+ + Sbjct: 601 TLIRVQIDDEVRSSKRVTTLMGDKVAPRREWIENH 635 >gi|315107489|gb|EFT79465.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1] Length = 685 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 37 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 96 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 156 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSDEIFDAIV 215 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 396 ALNEKLSDWFEENPNEGKSIVQKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|284931763|gb|ADC31701.1| DNA gyrase subunit B [Mycoplasma gallisepticum str. F] Length = 648 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 240/598 (40%), Positives = 359/598 (60%), Gaps = 14/598 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N + Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TL + V D+GRGIP D+H++ S E ++T LHAGGKF+ +Y +SGGLHG Sbjct: 61 TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS K+ + R+ I+ + F + G+ PL + G+ GT + F+P I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPLEIIGTDNKKQGTRIQFVPDFSI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++ + R+ +L+FLN ++ D+R+ + + Y+GGI+ +V L+ K+ Sbjct: 181 MEQFEYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240 Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 P++ I + + +++A ++ +GY+ + F NNI GGTH G Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ++AL + I Y + K+ + +D EG T+++SIK +P++ QTK++L ++E Sbjct: 301 FKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 360 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR S V++ L + E+P EA I K + A R + A + RK + ASLP Sbjct: 361 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 419 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC+ +D + SEL++VEGDSAGGSAK GR R QAILPLRGK+LNVE+A +K+ + Sbjct: 420 GKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 479 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI TLITA+G G+ F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M LI Sbjct: 480 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 538 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY ++ K +Y+ + LE++ G + L Sbjct: 539 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 596 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 5/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678 V N E + ++ + I + + ++ V +L Sbjct: 465 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 524 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + F I + L +S I L + +QR Sbjct: 525 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P+ R+LL+V I DA+ AD FS LMGDEV PRR+FI++N+ Sbjct: 583 YKGLGEMDDVQLWETTMDPEKRTLLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 642 Query: 799 S-ALD 802 +D Sbjct: 643 VKNID 647 >gi|327334567|gb|EGE76278.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1] Length = 685 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 270/583 (46%), Positives = 365/583 (62%), Gaps = 13/583 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D Sbjct: 32 TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGV Sbjct: 91 IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G SVVNAL++ + ++R+G + SF G D PL + + GT V F PS +I Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 F F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V + Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +Y+ +PPL+ + S + + D L L+ +L Sbjct: 570 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|227510437|ref|ZP_03940486.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513446|ref|ZP_03943495.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577] gi|227524588|ref|ZP_03954637.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290] gi|227083319|gb|EEI18631.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri ATCC 11577] gi|227088263|gb|EEI23575.1| DNA topoisomerase IV subunit B [Lactobacillus hilgardii ATCC 8290] gi|227190089|gb|EEI70156.1| DNA topoisomerase IV subunit B [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 682 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 271/601 (45%), Positives = 371/601 (61%), Gaps = 13/601 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 Q YD SIQIL+GL+AV+KRP MYIG TD GLHH++YE++DN +DE L GY D+I Sbjct: 34 KQKQKYDDSSIQILEGLEAVRKRPGMYIGSTDY-RGLHHLVYEIVDNGVDEVLAGYGDMI 92 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D+GRG+P +H G EVI+T+LHAGGKF Q YK SGGLHGVG Sbjct: 93 RVTIHKDNSITVVDHGRGMPVGMHAS-GKPTPEVILTQLHAGGKFGQGGYKTSGGLHGVG 151 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS+WLK+ I R+G YE F + G L G TGT V+F P S IF+ Sbjct: 152 ASVVNALSTWLKVTIVRDGYKYEEDFKDGGHPVGTLRKLGKTKEHTGTTVSFKPDSSIFT 211 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N+ TL RLRE +FL +I LID+R + +E T Y+ GI+ FV YL+ K Sbjct: 212 NTVYNFSTLSERLRESAFLLKGTKIILIDERPGQEQEETFHYEDGIKEFVQYLNED-KHT 270 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + G++D + +++A ++NDGY E ++ F NN+ KDGGTH +GLR+A T+ Y Sbjct: 271 LGDVMYFDGTKDGVEVEVAAQYNDGYSETMMSFVNNVRTKDGGTHEAGLRNAWTKAFNDY 330 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K +++ G D REG + VLS+++P+ +F QTKEKL + E RS+V++ V+ Sbjct: 331 ARKVGLLKDKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEARSIVDNVVS 390 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSE 419 + L +L E+ A+++V K L A R AARRARD TR ++ L GKL Sbjct: 391 EKLGYYLMENGEFAQMLVHKALRARQARQAARRARDETRNGKRHKKQERLLSGKLTPAQS 450 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D ++ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ERA+ +++ ++EI T+I Sbjct: 451 KDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIY 510 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F+I Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G ++I P Sbjct: 511 TIGAGVGAD-FNIEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDKGRVFIALP 569 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PLY + + +QY E L+ ++ F + + +D A Sbjct: 570 PLYKLQKGAGKKAKIQYAWTNEELDSVSKTFGKGYSLQRFKGLGEMNADQLWETTMDPAT 629 Query: 596 K 596 + Sbjct: 630 R 630 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 6/197 (3%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + V N E + + ++ + I ++ N D Sbjct: 472 QGRDRRYQAIL---PLRGKVLNTERAKLPEIMKNEEINTMIYTIGAGVGADFNIEDANYD 528 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG-- 718 ++ + F + I R+ + L G K KI Sbjct: 529 KIIIMTDADDDGAHIQILLLTFFYKYMRPMIDKGRVFIALPPLYKLQKGAGKKAKIQYAW 588 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LD++ KG S+QR+KGLGEMNA QLWETT++P TR+L++V+I DA+ A+ + Sbjct: 589 TNEELDSVSKTFGKGYSLQRFKGLGEMNADQLWETTMDPATRTLIKVRIDDAALAERRVT 648 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I++N Sbjct: 649 TLMGDKVEPRRKWIEQN 665 >gi|283470569|emb|CAQ49780.1| DNA topoisomerase IV, B subunit [Staphylococcus aureus subsp. aureus ST398] Length = 665 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 370/598 (61%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N DGS + DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEIDVTINKDGSISTEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDT 177 Query: 181 IFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ Sbjct: 178 IFKASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLH-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+ Sbjct: 297 FNDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 S V D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 SVVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++ Sbjct: 477 TIIHTIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVF 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K ++Y +E L G ++ L Sbjct: 536 IALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NPDTR+L+RV++ D ++ Sbjct: 558 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 618 TTLMGDKVQPRREWIEKH 635 >gi|168067741|ref|XP_001785766.1| predicted protein [Physcomitrella patens subsp. patens] gi|162662596|gb|EDQ49430.1| predicted protein [Physcomitrella patens subsp. patens] Length = 642 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 269/589 (45%), Positives = 366/589 (62%), Gaps = 17/589 (2%) Query: 16 QILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCT 75 Q+L+GL+AV+KRP MYIG T G GLHH++YEVLDNAIDE+ G+A + + ++ DGS + Sbjct: 2 QVLEGLEAVRKRPGMYIGST-GAKGLHHLVYEVLDNAIDEAQAGFASTVDIVMHTDGSVS 60 Query: 76 VSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGVGVSVVNALSS 133 +SDNGRGIPTD+H G SA E ++T LHAGGKF + Y VSGGLHGVG+SVVNALS Sbjct: 61 ISDNGRGIPTDVHPVTGKSALETVLTVLHAGGKFGGDNSGYSVSGGLHGVGISVVNALSE 120 Query: 134 WLKLRIKREGNIYEMSFINGILDNPL---VVTGSAGNDTGTEVTFLPSSD------IFSV 184 + + + R G+ Y+ SF G + L + TGT V FLP S Sbjct: 121 RVDVTVWRNGHEYKQSFEFGKSVSHLSGSRLPRDQKGRTGTLVKFLPDKQGKSFLMFTST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR--SPEPREITMFYKGGIEAFVSYLDRHKKP 242 +F+Y T+ R REL+FLN V I L + R T + GG+ +V +L+ K+ Sbjct: 181 TEFDYSTISGRTRELAFLNPQVTIYLKQDHANPEKIRSNTYHFSGGLSEYVLWLNNDKER 240 Query: 243 LMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L PI I ++ I ID++++W D Y + ++ + N+I DGGTHL G+++A+TR + Sbjct: 241 LH-EPISIHRKKEGIIIDVSLQWCADSYTDTIIGYANSIRTSDGGTHLDGIKAAVTRTLN 299 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 + K+ K+ ++ GD REG T V+S+K+P+P F QTK +L + EVR +V+ V Sbjct: 300 TLGRKAKILKEKDENLSGDHAREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRRLVDQAVQ 359 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 + ++ +LE+HP + I+ K L A AA++AR+L RRK VL + LPGKL+DCS D Sbjct: 360 ELVTEYLEQHPNTLEAILSKALQAFRAAMAAKKARELVRRKNVLKSSMLPGKLSDCSCTD 419 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER + +QEI LI AL Sbjct: 420 PKNSEIFIVEGDSAGGSAKQGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNLILAL 479 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+ + F + LRYHKIII+TDADVDGAHIRTLLLTFFFR +L +G +Y+ PPL Sbjct: 480 GLGVKGEEFSKDLLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFESGCIYVGVPPL 539 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + RGK Y +E L++ L + G + L Sbjct: 540 YKVERGKQAHYCFNEADLKNLLKTFPSNASYNIQRFKGLGEMMPQQLWE 588 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 50/208 (24%), Positives = 75/208 (36%), Gaps = 12/208 (5%) Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSD 661 + + + I + + L L + E S + Sbjct: 439 QGRDRRYQAILPLRGKILNIERKDDAAIYKNQEIQNLILALGLGVKGEEFSKDLLRYHKI 498 Query: 662 ILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCS 721 I++ L + F +Y+R K Sbjct: 499 IILTDADVDGAHIRTLLLTFFF----RYQRALFESGCIYVGVPPLYKVERGKQAHYCFNE 554 Query: 722 L-LDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L + ++QR+KGLGEM QLWETTL+P R L + + DA++A +FS Sbjct: 555 ADLKNLLKTFPSNASYNIQRFKGLGEMMPQQLWETTLDPTQRMLKLLTLEDAAEASMMFS 614 Query: 779 RLMGDEVEPRREFIQENS----LPSALD 802 LMGD+VEPR+E IQ N+ L LD Sbjct: 615 TLMGDKVEPRKELIQNNASRMKLE-NLD 641 >gi|116491056|ref|YP_810600.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1] gi|116091781|gb|ABJ56935.1| DNA topoisomerase IV subunit B [Oenococcus oeni PSU-1] Length = 674 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 256/653 (39%), Positives = 364/653 (55%), Gaps = 20/653 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + SY+ I+IL+GL+AV+ RP MYIG TD GLHH+++E++DNA+DE L GY Sbjct: 8 MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV D+GRG+P +H G EVI+T LHAGGKF Q YK +GGL Sbjct: 66 GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L + I R+G Y +F N G L G + TGT +TF P Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + + T+ RLRE +FL ++I+LID+R YK GI+ FV YL+ Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKEFVDYLNEG 244 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ I G + I +++A ++NDGY E +L F NN+ DGGTH +G++ A T+ Sbjct: 245 -KAVIGKVIYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K+ K+ + G D REG + V+++++P+ +F QTKEKL + E RS V Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415 S + + L +L E+ A+ +V+K L A R AAR+ARD +R GKL Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKRKEFLLSGKLT 423 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A +++L ++EI Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F+I Y+K+IIMTDAD DGAHI+TLLLTFF++ M L+ G +Y Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542 Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++ E L + + I + + + Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGE------MDANL 596 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + + + + +A L+ Sbjct: 597 LWETTMDPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 57/87 (65%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K + L + +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615 Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795 DA+ A+ + LMGD+V PRR++I++N Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642 >gi|148544013|ref|YP_001271383.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016] gi|227364928|ref|ZP_03848972.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3] gi|325682449|ref|ZP_08161966.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri MM4-1A] gi|148531047|gb|ABQ83046.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri DSM 20016] gi|227070032|gb|EEI08411.1| DNA topoisomerase IV subunit B [Lactobacillus reuteri MM2-3] gi|324978288|gb|EGC15238.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus reuteri MM4-1A] Length = 674 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 258/595 (43%), Positives = 368/595 (61%), Gaps = 15/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + YDA SIQ+LKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY D I Sbjct: 8 KEEVKYDASSIQVLKGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGDEI 66 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGGLHGV 123 + + D + TV D+GRG+P +H G EVIMT LHAGGKF Q YK SGGLHGV Sbjct: 67 NIIIEADNAITVQDHGRGMPVGMHAS-GKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGV 125 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALSS L L I R+ Y+ F + G L G + GT V+F P IF Sbjct: 126 GASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVGTLKKLGKTKAENGTTVSFKPDPKIF 185 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S ++Y+TL +RLRE +FL ++I+L DKR+ + ++ + GI+ FVSYL+ K Sbjct: 186 STTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFADGIQEFVSYLNEG-KD 244 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 ++ + G +D + +++A ++NDGY E++L F NN+ DGGTH +G RSA T+ Sbjct: 245 VLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNE 304 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y +K K + +++ G D REG T+V+S+++P+ +F QTK+KL + E R +V++ V Sbjct: 305 YAKKVGLLKANDKNLEGSDVREGLTAVISVRIPERLLQFEGQTKDKLGTLEARKIVDAIV 364 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 ++ L+ L E+ A+++++K L A R+AAR+AR+ R ++ +L GKL Sbjct: 365 SEQLNYALMENGDFAQMLIRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQ 424 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D +L ++E+ T+I Sbjct: 425 SKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTII 484 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G G + F++ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G +YI Sbjct: 485 YTVGAGAGSE-FNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIAL 543 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + R ++ Y E L G ++ + L Sbjct: 544 PPLYRLQRGRGAKTNITYAWTNEELTKLTKKMG-KGAQLQRFKGLGEMNADQLWE 597 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 383 IRKALKAREAREAARKARNQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAG 442 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + +V +L + + + ++ +N Sbjct: 443 GSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEELNTIIYTVGAGAGSEFNVEDSNY 502 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + I + +I + L G K IT Sbjct: 503 DKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNITYA 562 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QR+KGLGEMNA QLWETT+NPDTR+L++V+I DA A+ Sbjct: 563 WTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPDTRTLIQVRIEDAELAERRV 622 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMG++VEPRRE+I+EN Sbjct: 623 TTLMGNKVEPRREWIEEN 640 >gi|59798271|sp|Q6G9K5|PARE_STAAS RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B Length = 663 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 263/594 (44%), Positives = 368/594 (61%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDDTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 104/258 (40%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + ++R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQADRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|83319520|ref|YP_424038.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283406|gb|ABC01338.1| DNA gyrase, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 634 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 245/565 (43%), Positives = 363/565 (64%), Gaps = 7/565 (1%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A+SI++LKGL+AV+ RP MYIG T +GLHH+++E+LDN+IDE++ GYAD+I V Sbjct: 2 SQEYSAESIKVLKGLEAVRTRPGMYIGSTSK-TGLHHLVWEILDNSIDEAMAGYADLINV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ + + DNGRGIP ++ + SA ++ T+LHAGGKF+ ++YK+SGGLHGVG S Sbjct: 61 TITKENEVIIQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFDSETYKISGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILD-NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS ++++ + R Y F G + L G + GT+V F P +IF Sbjct: 121 VVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHT-DLRGTKVKFKPDPEIFKET 179 Query: 186 -DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y+ +++++++L+FLN ++I+L D+R + E GI ++ + K + Sbjct: 180 VVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFL--NGILDYIKEKNETKNKIN 237 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + + ++I +++A+++N Y EN++ F NNI +GGTH GL+ AL R I Y Sbjct: 238 PNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTHEDGLKQALIRDINRYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + + K DD +EG +LS++ DP++ QTK KL + + + V + + Sbjct: 298 DTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKLSNPDAKEAVNIIIGNAF 357 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +L + P +AK I+ K ++A R AA+RAR+ TRRK LD SLPGKLADC +D Sbjct: 358 EEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALDSFSLPGKLADCETKDSNI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK+LNVER + S+ EI +++TA+GTG Sbjct: 418 AELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTEARAFSNNEIKSIVTAVGTG 477 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 I ++ D++KLRY KI+IMTDADVDGAHIRTLLLTFF+R M L+ NG +YI +PPLY I Sbjct: 478 IKEEL-DLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYMKPLVANGHIYIAQPPLYKI 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS 569 GK + Y + L++ N+ + Sbjct: 537 EAGKKIAYAYTDNQLDELKNNEFNN 561 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 4/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E +++ + + + ++ S +V V + Sbjct: 450 VLNVERVTEARAFSNNEIKSIVTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLL 509 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI--SMQR 738 F + + + I L I G KI + LD + + + ++QR Sbjct: 510 LTFFYRYMKPLVANGHIY-IAQPPLYKIEAGKKIAYAYTDNQLDELKNNEFNNLKYTIQR 568 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P R++L++ + DA+ A+++FS LMG++ E R+ +IQ+N+ Sbjct: 569 YKGLGEMDPLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKF 628 Query: 799 S-ALD 802 +D Sbjct: 629 VENID 633 >gi|154496136|ref|ZP_02034832.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC 29799] gi|150274691|gb|EDN01755.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC 29799] Length = 649 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 275/652 (42%), Positives = 401/652 (61%), Gaps = 13/652 (1%) Query: 1 MSDNIQ--------NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNA 52 MSD ++ + Y IQ+L+GL+AV+KRP MYIG T SGLHH++YE++DN+ Sbjct: 1 MSDELELEQSATQVDHEYGGSEIQVLEGLEAVRKRPGMYIGSTSS-SGLHHLVYEIVDNS 59 Query: 53 IDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK 112 IDE+L GY D I V + +V+DNGRGIP D+ + G+ A EV+ T LHAGGKF Sbjct: 60 IDEALAGYCDRIDVAILEGDIISVTDNGRGIPVDIQPQTGLPALEVVFTILHAGGKFGGG 119 Query: 113 SYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTE 172 YKVSGGLHGVG SVVNALS WL++R+ ++G I+EM F G + + + G + GTE Sbjct: 120 GYKVSGGLHGVGASVVNALSEWLEVRVYKDGKIHEMKFSRGKVTQSMTIVGET-DRHGTE 178 Query: 173 VTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAF 232 V F P ++F ++Y+ L R+RE +FLN+ ++I + D+R +E TM+Y+GGI F Sbjct: 179 VVFKPDPEMFEDTVYDYEILHTRMREEAFLNAGLKIVIQDRRPGMEQEDTMYYEGGIREF 238 Query: 233 VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 VS+++++K P+ I + G +D+ ++AM++ D Y+E ++ F NN+ +GG H +G Sbjct: 239 VSFINKNKTPIHDGVIYMSGMKDDSIAEIAMQYTDTYNEILVSFANNVHTPEGGMHETGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 + ALT + +Y +K K ++ V G+DCREG T+V+S+K+ + +F QTK KL ++ + Sbjct: 299 KQALTNVLNAYGKKMKILKDEE-KVSGEDCREGLTAVISVKLTEAQFEGQTKAKLGNAHI 357 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 R++V + V++ L +LEE+P K I+ K L AS R+AAR+AR+ RRK L A++P Sbjct: 358 RTLVSTLVSEKLEEFLEENPAVGKAILDKALTASRAREAARKARESVRRKTALGGAAMPD 417 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DC+E +P+ +EL++VEGDSAGGSA QGR QAILPL GK+LNVE+AR DK+ + Sbjct: 418 KLRDCNEVNPELTELYIVEGDSAGGSATQGRDSRFQAILPLWGKMLNVEKARADKVYGND 477 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 ++ +ITALG GIG D FD++KLRYHK+IIM DADVDGAHIRTLLLTFFFR M LI NG Sbjct: 478 KLQPVITALGAGIG-DEFDVSKLRYHKVIIMADADVDGAHIRTLLLTFFFRFMRPLIENG 536 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 ++Y PPLY +TRGK+ + +E + S+ + + Sbjct: 537 YVYSAVPPLYKLTRGKTTRVAFSDEERDQVSAELRGDNPNAKVDISRFKGLGEMNPHEL- 595 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + + E + + +N Sbjct: 596 WETTMDPEKRTLRRIELDDAVAADATFTILMGEKVEPRKEFIEKNAKYAVNL 647 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 + R+KGLGEMN +LWETT++P+ R+L R+++ DA AD F+ LMG++VEPR+EFI++N Sbjct: 581 ISRFKGLGEMNPHELWETTMDPEKRTLRRIELDDAVAADATFTILMGEKVEPRKEFIEKN 640 Query: 796 SLP-SALD 802 + LD Sbjct: 641 AKYAVNLD 648 >gi|290890537|ref|ZP_06553612.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429] gi|290479933|gb|EFD88582.1| hypothetical protein AWRIB429_1002 [Oenococcus oeni AWRIB429] Length = 674 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 255/653 (39%), Positives = 364/653 (55%), Gaps = 20/653 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + SY+ I+IL+GL+AV+ RP MYIG TD GLHH+++E++DNA+DE L GY Sbjct: 8 MTKK-KEISYNESDIKILEGLEAVRVRPGMYIGSTD-TRGLHHLVWEIVDNAVDEILAGY 65 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I V ++ D S TV D+GRG+P +H G EVI+T LHAGGKF Q YK +GGL Sbjct: 66 GDSIKVIIHQDNSITVVDHGRGMPVGMHAS-GKPTPEVILTVLHAGGKFGQGGYKTAGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L + I R+G Y +F N G L G + TGT +TF P Sbjct: 125 HGVGSSVVNALSERLTVEINRDGYKYRENFENGGKPVGSLKKIGKTKDQTGTTITFKPDP 184 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + + T+ RLRE +FL ++I+LID+R YK GI+ FV YL+ Sbjct: 185 TIFSTTVYKFQTIADRLRESAFLLKGIKITLIDERPDPQIIEEYQYKDGIKKFVDYLNEG 244 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K ++ + G + I +++A ++NDGY E +L F NN+ DGGTH +G++ A T+ Sbjct: 245 -KAVIGKVMYFDGEQQGIEVEVAAQYNDGYSETLLSFVNNVRTPDGGTHETGMKVAWTKA 303 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K+ K+ + G D REG + V+++++P+ +F QTKEKL + E RS V Sbjct: 304 FNDYARKAGLLKEKDPNFDGSDVREGLSVVINLRVPENILQFEGQTKEKLGTIEARSAVG 363 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLA 415 S + + L +L E+ A+ +V+K L A R AAR+ARD +R GKL Sbjct: 364 SVIEEQLGRYLMENGDFAQNLVRKALRAREARQAARKARDESRSGKKKKGKEFLLSGKLT 423 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D K ELFLVEGDSAGGSAKQGRSR+ QA+LPLRGK+LN E+A +++L ++EI Sbjct: 424 PAQSKDASKKELFLVEGDSAGGSAKQGRSRKFQAVLPLRGKVLNTEKAGLEELLKNEEIS 483 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G F+I Y+K+IIMTDAD DGAHI+TLLLTFF++ M L+ G +Y Sbjct: 484 TMIYTIGAGVG-TDFNIKDAAYNKVIIMTDADDDGAHIQTLLLTFFYKYMRPLVEAGRVY 542 Query: 536 IIKPPLYGI----TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + + K ++ E L + + I + + + Sbjct: 543 IALPPLYKVTSGAKKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGE------MDANL 596 Query: 592 DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 +D + + + + + +A L+ Sbjct: 597 LWETTMDPDQRTLIRVKIEDAALAEKRVTILMGDQVAPRRKWIEDNVAFSLDE 649 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 57/87 (65%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 K + L + +G ++ RYKGLGEM+A+ LWETT++PD R+L+RVKI Sbjct: 556 KKNKKEEFAWTNEELAELTKKAARGYTITRYKGLGEMDANLLWETTMDPDQRTLIRVKIE 615 Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795 DA+ A+ + LMGD+V PRR++I++N Sbjct: 616 DAALAEKRVTILMGDQVAPRRKWIEDN 642 >gi|319401357|gb|EFV89568.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis FRI909] Length = 666 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 278/672 (41%), Positives = 396/672 (58%), Gaps = 20/672 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGL Sbjct: 59 GDAITVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +I PPLY + + K ++Y +E LE+ ++ + + + Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETT 594 Query: 591 ID----DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 ++ +++ + T + V E E + + + Sbjct: 595 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQEDQSILDNKEVQI 654 Query: 647 EKSEKSWHGSIN 658 ++EK N Sbjct: 655 LENEKYIEEETN 666 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + +S ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG ++QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635 >gi|220910789|ref|YP_002486098.1| DNA gyrase subunit B [Arthrobacter chlorophenolicus A6] gi|219857667|gb|ACL38009.1| DNA gyrase, B subunit [Arthrobacter chlorophenolicus A6] Length = 695 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 266/605 (43%), Positives = 375/605 (61%), Gaps = 30/605 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 25 AEAATPREYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 83 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I + L DG V D+GRGIP D+H E EV+MT LHAGGKF Y VSGGLH Sbjct: 84 SHIEIVLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLH 143 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG+SVVNALSS + ++R+G+++ MSF N G L V G TGT TF P ++ Sbjct: 144 GVGISVVNALSSRVDTEVRRQGHVWRMSFANGGKPQGSL-VQGEETERTGTTQTFYPDAE 202 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------------SPEP 218 IF +F+++TL+ R ++++FLN ++I+L D+R + E Sbjct: 203 IFETTEFDFETLRARFQQMAFLNKGLRITLTDERAATEEEADADPDLDGMVTEGEINAEH 262 Query: 219 REITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVL 274 R + Y G+ +V +L+ KK + I + I++++AM+W + Y E+V Sbjct: 263 RTVVYQYDEGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVH 322 Query: 275 CFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKM 334 + N I +GGTH G R+A+T + Y + K+ ++ GDD REG T+V+S+K+ Sbjct: 323 TYANTINTHEGGTHEEGFRAAMTSLVNRYAREKGIIKEKDDNLTGDDIREGLTAVISVKL 382 Query: 335 PDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARR 394 +P+F QTK KL +SEV+ V+ V DGL WLE +P A+ +++K + A+ R AAR+ Sbjct: 383 SEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAARK 442 Query: 395 ARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLR 454 ARD RRK L+ +PGKL+DCS +DP+K E+++VEGDSAGGSAK+GR+ E QAILPLR Sbjct: 443 ARDNARRKSPLESFGMPGKLSDCSSKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPLR 502 Query: 455 GKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIR 514 GKILNVERAR DK L + E+ ++ITA GTGIG+D FD+ KLRYHKI++M DADVDG HI Sbjct: 503 GKILNVERARLDKALGNAEVQSMITAFGTGIGED-FDLAKLRYHKIVLMADADVDGQHIT 561 Query: 515 TLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIEL 574 TLL+T FR M LI NG++Y+ +PPLY I + + D + + + Sbjct: 562 TLLMTLLFRYMRPLIENGYVYLAQPPLYRIKWSNAPHDYVYSDRERDAKLVSGQAAGRRI 621 Query: 575 FCDSK 579 D+ Sbjct: 622 PKDNG 626 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA AD +FS LMG++VE RR FIQ+N Sbjct: 627 IQRYKGLGEMDYTELWDTTMDPDNRTLLQVTMDDALAADQIFSVLMGEDVESRRNFIQQN 686 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 687 AKDVRFLDI 695 >gi|282876210|ref|ZP_06285077.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135] gi|281295235|gb|EFA87762.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis SK135] gi|329735876|gb|EGG72155.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU028] Length = 666 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 274/599 (45%), Positives = 377/599 (62%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGL Sbjct: 59 GDAITVTINQDGSISIEDNGRGMPTGIH-VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + + K ++Y +E LE+ I G ++ L Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635 >gi|290894160|ref|ZP_06557131.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071] gi|290556290|gb|EFD89833.1| DNA topoisomerase IV subunit B [Listeria monocytogenes FSL J2-071] Length = 655 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 261/658 (39%), Positives = 386/658 (58%), Gaps = 18/658 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y+ DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I Sbjct: 1 MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGV 123 VTL++DGS +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGV Sbjct: 60 VVTLHVDGSVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS WL + I R+G Y+ F + G D L G + TGT + F P IF Sbjct: 119 GSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNY+TL RLRE +FL + I LID+R ++ G++ FV Y++ K Sbjct: 178 PTTSFNYETLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDV 235 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Sbjct: 236 LHPVA-SFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFND 294 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V Sbjct: 295 YARRVNLVKEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVV 354 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 355 AEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQ 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I Sbjct: 415 SRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTII 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I Sbjct: 475 HTVGAGVG-TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIAL 533 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-D 593 PPLY ++ + + ++Y +E L+ + I+ + + + ++ D Sbjct: 534 PPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPD 593 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + ++ D ++ + ++ N L E+ Sbjct: 594 TRTLIRVRVDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 651 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 367 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 426 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 427 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 486 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 487 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 546 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 547 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 605 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 606 ARAERRVATLMGDKVEPRRQWIEKH 630 >gi|314965771|gb|EFT09870.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2] gi|315094452|gb|EFT66428.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1] gi|327328947|gb|EGE70707.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1] Length = 685 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D Sbjct: 32 TTVDDSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGV Sbjct: 91 IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G SVVNAL++ + ++R+G + SF G D PL + + GT V F PS +I Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 F F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V + Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569 Query: 533 FLYIIKPPLYGITRGKSLQYV 553 +Y+ +PPL+ + S + Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|27467954|ref|NP_764591.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228] gi|57866861|ref|YP_188504.1| DNA topoisomerase IV subunit B [Staphylococcus epidermidis RP62A] gi|27315499|gb|AAO04633.1|AE016747_130 topoisomerase IV subunit B [Staphylococcus epidermidis ATCC 12228] gi|57637519|gb|AAW54307.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis RP62A] gi|329725092|gb|EGG61586.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU144] gi|329736686|gb|EGG72952.1| DNA topoisomerase IV, B subunit [Staphylococcus epidermidis VCU045] Length = 666 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 274/599 (45%), Positives = 377/599 (62%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MAMN-KQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGL Sbjct: 59 GDAITVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDS 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKSTTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNEYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + + K ++Y +E LE+ I G ++ L Sbjct: 535 FIALPPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 592 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 601 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 635 >gi|314982912|gb|EFT27004.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3] gi|315091218|gb|EFT63194.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4] gi|315105172|gb|EFT77148.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2] Length = 685 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D Sbjct: 32 TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGV Sbjct: 91 IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G SVVNAL++ + ++R+G + SF G D PL + + GT V F PS +I Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 F F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V + Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 390 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569 Query: 533 FLYIIKPPLYGITRGKSLQYV 553 +Y+ +PPL+ + S + Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|282853046|ref|ZP_06262383.1| DNA gyrase, B subunit [Propionibacterium acnes J139] gi|282582499|gb|EFB87879.1| DNA gyrase, B subunit [Propionibacterium acnes J139] Length = 690 Score = 549 bits (1414), Expect = e-153, Method: Composition-based stats. Identities = 266/561 (47%), Positives = 358/561 (63%), Gaps = 13/561 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D Sbjct: 37 TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 95 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGV Sbjct: 96 IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 155 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G SVVNAL++ + ++R+G + SF G D PL + + GT V F PS +I Sbjct: 156 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 215 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 F F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V + Sbjct: 216 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 275 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 276 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 335 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 336 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 395 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 396 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 455 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 456 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 515 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 516 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 574 Query: 533 FLYIIKPPLYGITRGKSLQYV 553 +Y+ +PPL+ + S + Sbjct: 575 HVYLAQPPLFRLRWTNSPHEL 595 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 682 AKDVRFLDI 690 >gi|322411915|gb|EFY02823.1| DNA topoisomerase IV subunit B [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 649 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 275/650 (42%), Positives = 398/650 (61%), Gaps = 19/650 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ ++Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I V +N DGS +V+D+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGDDIRVIINKDGSVSVADSGRGMPTGQH-VMGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WLK+ I R+G +Y F N G L G+A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSAWLKVEITRDGAVYRQCFENGGKPVTTLRKVGTAPKSKSGTVVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS DF ++T+ RL+E +FL +V++SL D R EP Y+ G++ FV YL+ Sbjct: 179 DDTIFSTIDFKFNTIAERLKESAFLLKNVKMSLTDLRGDEPIVEEFHYENGVQDFVEYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+S V++ L+ +L E+ A +V+K + A R+AAR+ARD +R +K D L GK Sbjct: 358 VDSIVSEKLTFFLLENGELASNLVRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++ KK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNAKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 ISTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED I G ++ N L Sbjct: 537 VYIALPPLYKMSKGKGKTEKISYAWTDGELEDLRKEFG-KGAILQRYKGLGEMNANQLWE 595 Query: 590 FI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 + I I D + + + + + +L Sbjct: 596 TTMDPETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEE 645 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + + ++ + + S + ++ ++ Sbjct: 381 VRKAIKARDAREAARKARDDSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAG 440 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ +++ + I ++ N Sbjct: 441 GSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEEISTMVYTIGAGVGADFNLEDINY 500 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G KI+ Sbjct: 501 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKTEKISYA 560 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMNA+QLWETT++P+TR+L+RV I D ++A+ Sbjct: 561 WTDGELEDLRKEFGKGAILQRYKGLGEMNANQLWETTMDPETRTLIRVTIDDLARAERRV 620 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+ PRR++I++N Sbjct: 621 SVLMGDKAAPRRQWIEDN 638 >gi|7437456|pir||T10005 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium leprae gi|1262356|emb|CAA94712.1| DNA gyrase B [Mycobacterium leprae] Length = 697 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 269/655 (41%), Positives = 383/655 (58%), Gaps = 41/655 (6%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + Y A SI IL+GL+AV+KRP MY+G T GE GLHH+I+EV+DN++DE++ GYA Sbjct: 22 AQRKAQDEYGAASITILEGLEAVRKRPGMYVGST-GERGLHHLIWEVVDNSVDEAMAGYA 80 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 + V L DGS V+DNGRGIP +H G+ +V+MT+LHAGGKF Y VSGG Sbjct: 81 TQVDVRLFDDGSVEVADNGRGIPVAVHA-TGVPTVDVVMTQLHAGGKFGGKDSGYNVSGG 139 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS+ +++ IKR+G + + + ++ G A TGT + F Sbjct: 140 LHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVP--GILKQGEATEATGTTIRFWADP 197 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------- 214 DIF +++ T+ R++E++FLN + I+L+D+R Sbjct: 198 DIFETTKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEE 257 Query: 215 -------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 + R T Y GG+ FV +++R K P+ QS I G +++AM+WN Sbjct: 258 KSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQWNG 317 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 GY E+V F N I +GGTH G RSALT + Y + K ++ GDD REG Sbjct: 318 GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLA 377 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W E +P++AK +V K + ++ Sbjct: 378 AVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQ 437 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R AAR+AR+L RRK D+ LPGKLADC DP+ SEL++VEGDSAGGSAK GR Sbjct: 438 ARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMF 497 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI++LRYHKI++M DAD Sbjct: 498 QAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISRLRYHKIVLMADAD 556 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDG HI TLLLT FR M LI +G++++ +PPLY + + +S D L+ Sbjct: 557 VDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETG 616 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 L ++ + I + +D + + + ++ A + Sbjct: 617 LKLGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 669 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+T +G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 612 LLETGLKLGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 670 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 671 SILMGEDVDARRSFITRNAKDVRFLDV 697 >gi|50841503|ref|YP_054730.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202] gi|50839105|gb|AAT81772.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202] Length = 690 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 42 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 161 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDYEGTTVRFQPSDEIFDAIV 220 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 682 AKDVRFLDI 690 >gi|289427505|ref|ZP_06429218.1| DNA gyrase, B subunit [Propionibacterium acnes J165] gi|289159435|gb|EFD07626.1| DNA gyrase, B subunit [Propionibacterium acnes J165] gi|332674408|gb|AEE71224.1| DNA gyrase subunit B [Propionibacterium acnes 266] Length = 690 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 42 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL+ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 161 NALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 220 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 682 AKDVRFLDI 690 >gi|289424273|ref|ZP_06426056.1| DNA gyrase, B subunit [Propionibacterium acnes SK187] gi|295129538|ref|YP_003580201.1| DNA gyrase, B subunit [Propionibacterium acnes SK137] gi|289154970|gb|EFD03652.1| DNA gyrase, B subunit [Propionibacterium acnes SK187] gi|291375904|gb|ADD99758.1| DNA gyrase, B subunit [Propionibacterium acnes SK137] Length = 690 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 42 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 100 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 101 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 160 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 161 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 220 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 221 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 280 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 281 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 340 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 341 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 400 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 401 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 460 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 461 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 520 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 521 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 579 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 580 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 617 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 682 AKDVRFLDI 690 >gi|313806865|gb|EFS45363.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2] gi|313817652|gb|EFS55366.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2] gi|313821523|gb|EFS59237.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1] gi|313824533|gb|EFS62247.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2] gi|313826201|gb|EFS63915.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1] gi|314926324|gb|EFS90155.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3] gi|314961671|gb|EFT05772.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2] gi|314980248|gb|EFT24342.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2] gi|314987104|gb|EFT31196.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2] gi|314990695|gb|EFT34786.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3] gi|315083089|gb|EFT55065.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2] gi|315086622|gb|EFT58598.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3] gi|315088023|gb|EFT59999.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1] gi|327333681|gb|EGE75398.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3] gi|327444460|gb|EGE91114.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2] gi|328757967|gb|EGF71583.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1] Length = 685 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 37 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 96 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL+ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 156 NALAVHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 215 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|313771057|gb|EFS37023.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1] gi|313792559|gb|EFS40645.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1] gi|313803561|gb|EFS44743.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2] gi|313811778|gb|EFS49492.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1] gi|313814213|gb|EFS51927.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1] gi|313832312|gb|EFS70026.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1] gi|313832772|gb|EFS70486.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1] gi|313839631|gb|EFS77345.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1] gi|314963864|gb|EFT07964.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1] gi|314975206|gb|EFT19301.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1] gi|314977620|gb|EFT21715.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1] gi|314985195|gb|EFT29287.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1] gi|315079002|gb|EFT51014.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2] gi|315081489|gb|EFT53465.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1] gi|315097154|gb|EFT69130.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1] gi|327332508|gb|EGE74243.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2] gi|327446714|gb|EGE93368.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA2] gi|327448844|gb|EGE95498.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1] gi|327457406|gb|EGF04061.1| DNA gyrase, B subunit [Propionibacterium acnes HL092PA1] gi|328759820|gb|EGF73411.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1] Length = 685 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 37 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 96 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 156 NALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEIFDAIV 215 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|294630343|ref|ZP_06708903.1| DNA gyrase, B subunit [Streptomyces sp. e14] gi|292833676|gb|EFF92025.1| DNA gyrase, B subunit [Streptomyces sp. e14] Length = 685 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 285/645 (44%), Positives = 395/645 (61%), Gaps = 24/645 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 29 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 87 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 88 TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 147 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALSS + + ++ +G + + G+ PL +TGT VTF +DIF + Sbjct: 148 VVNALSSKVSVEVRTDGYRWTQDYKMGVPTAPLARHEETA-ETGTSVTFWADADIFETTE 206 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMFYKGGIE 230 ++++TL R +E++FLN + I L D+R + E + +T Y+GGI Sbjct: 207 YSFETLSRRFQEMAFLNKGLTIRLTDERESAKATSGADEAGADETDEVKSVTYHYEGGIV 266 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + I ++ + +S+++AM+WN GY E V F N I +GGT Sbjct: 267 DFVKYLNSRKGDVVHPTVIDLEAEDKDKSLSLEVAMQWNGGYSEGVYSFANIIHTHEGGT 326 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT I Y + ++ GDD REG T+++S+K+ +P+F QTK KL Sbjct: 327 HEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQTKTKL 386 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V + L+ WL+ +P+EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 387 GNTEAKTFVQKAVYEHLNDWLDRNPVEAADIIRKGIQAATARVAARKARDLTRRKGLLES 446 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR DK Sbjct: 447 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKARIDK 506 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 507 ILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHISTLLLTFLFRFMRP 565 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +Y+ +PPLY I G+ + D LI + DS L Sbjct: 566 LVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMGRQRGKRIREDSIQRFKG--L 623 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L++ + ++ T + A +F+ +++ Sbjct: 624 GEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 668 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR +G S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 599 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 658 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR+FIQ N+ LDI Sbjct: 659 SVLMGEDVEARRQFIQRNAKDVRFLDI 685 >gi|169825626|ref|YP_001695784.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41] gi|168990114|gb|ACA37654.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41] Length = 644 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 284/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ Sbjct: 9 EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ + V DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 68 DIQVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS +++ REG+I+E+ F G L + G + GT F +IF Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + YD L HR+REL++LN ++I++ D+R E R T Y+GGI ++V +L++ K+ Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIKITIADEREGEERSTTYHYEGGIRSYVEHLNQSKE 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + G +D IS+++AM++N G+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 247 PIHDPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K K+ ++ G+D REG T+++S+K PDP+F QTK KL +SEV + S + Sbjct: 306 DYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNSLFS 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 DG ++ E+P A+ +V+K L A+ R AA++AR+ TRRK L+++SLPGKLADCS + Sbjct: 366 DGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+LS+ EI +ITA Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR + LI G++YI +PPL Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y D+E+L++ L + G ++ L + Sbjct: 545 YQVKQGKHVEYCYDDETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWD 593 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 66/87 (75%), Gaps = 2/87 (2%) Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L+ + + + ++QRYKGLGEMNA QLW+TT++P+ R+LL+V++ DA +A+ Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWDTTMDPEHRTLLQVELDDAIKANQA 617 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 F RLMGDEVEPRR+FI+EN++ + LDI Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644 >gi|331701470|ref|YP_004398429.1| DNA topoisomerase IV subunit B [Lactobacillus buchneri NRRL B-30929] gi|329128813|gb|AEB73366.1| DNA topoisomerase IV, B subunit [Lactobacillus buchneri NRRL B-30929] Length = 651 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 261/597 (43%), Positives = 360/597 (60%), Gaps = 13/597 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 Q YD SIQIL+GLDAV+KRP MYIG TD GLHH++YE++DNA+DE L GY D I Sbjct: 3 KQKQKYDDSSIQILEGLDAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEVLAGYGDEI 61 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V+++ D S TV D+GRG+PT +H G EVI+T LHAGGKF Q YK SGGLHGVG Sbjct: 62 DVSIHKDNSITVVDHGRGMPTGMHAS-GKPTPEVILTMLHAGGKFGQGGYKTSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS+WLK+ I R+G YE F N G L G +GT VTF P IF+ Sbjct: 121 ASVVNALSTWLKVVIVRDGYRYEEDFKNGGHPVGTLKKLGKTRAHSGTTVTFKPDPTIFT 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N+ L RLRE +FL +I+L D+R+ + +E Y+ GI+ FV YL+ K Sbjct: 181 STVYNFSVLSERLRESAFLLKGTKITLTDERTDQEQEDVFHYEEGIKEFVQYLNED-KHT 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + G +D + +++A ++NDGY E +L F NN+ KDGGTH +GLR+A T+ Y Sbjct: 240 LGDVMYFDGKKDGVEVEVAAQYNDGYSETMLSFVNNVRTKDGGTHEAGLRNAWTKAFNDY 299 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K+ +++ G D REG + VLS+++P+ +F QTKEKL + E RS+V++ V+ Sbjct: 300 ARKVGMLKEKDKNLEGSDVREGLSVVLSLRIPEEILQFEGQTKEKLGTPEARSIVDNVVS 359 Query: 362 DGLSAWLEEHPLEAKIIVKK--VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L E+ A+ +V K + R T ++ L GKL Sbjct: 360 EKLGYYLMENGEFAQTLVHKALRARQARQAARKARDETRTGKRHKKQERLLSGKLTPAQS 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +D ++ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ERA+ +++ ++EI T+I Sbjct: 420 KDYSRNELFLVEGDSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIY 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F+I+ Y KIIIMTDAD DGAHI+ LLLTFF++ M +I NG ++I P Sbjct: 480 TIGAGVGAD-FNIDDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDNGRVFIALP 538 Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY + +G +QY E L + ++ F + + ++ Sbjct: 539 PLYKLQKGAGKKLKVQYAWTNEELNKVSKDFGKGYSLQRFKGLGEMNADQLWETTMN 595 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 3/262 (1%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + ++ R + + + E + +E L SK+ RN + Sbjct: 373 AQTLVHKALRARQARQAARKARDETRTGKRHKKQERLLSGKLTPAQSKDYSRNELFLVEG 432 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + + V N E + + ++ + I ++ Sbjct: 433 DSAGGSAKQGRDRRYQAILPLRGKVLNTERAKLPEIMKNEEINTMIYTIGAGVGADFNID 492 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715 N D ++ + F + I + R+ + L G K+K Sbjct: 493 DANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIDNGRVFIALPPLYKLQKGAGKKLK 552 Query: 716 ITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L+ + KG S+QR+KGLGEMNA QLWETT+NPDTR+L+RV+I DA+ A Sbjct: 553 VQYAWTNEELNKVSKDFGKGYSLQRFKGLGEMNADQLWETTMNPDTRTLIRVRIDDAALA 612 Query: 774 DDLFSRLMGDEVEPRREFIQEN 795 + + LMGD+VEPRR++I+ N Sbjct: 613 EKRVTTLMGDKVEPRRKWIEHN 634 >gi|325961456|ref|YP_004239362.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3] gi|323467543|gb|ADX71228.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3] Length = 695 Score = 548 bits (1413), Expect = e-153, Method: Composition-based stats. Identities = 266/600 (44%), Positives = 373/600 (62%), Gaps = 30/600 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY I V Sbjct: 30 QREYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCTHIEV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L DG V D+GRGIP D+H E EV+MT LHAGGKF Y VSGGLHGVG+S Sbjct: 89 VLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGIS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALSS + ++R+G+++ MSF + G L V G + TGT TF P IF Sbjct: 149 VVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSL-VKGEETDLTGTTQTFYPDPAIFEST 207 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------------PEPREITM 223 +F+++TL+ R ++++FLN ++I+L D+R+ E R + Sbjct: 208 EFDFETLRARFQQMAFLNKGLRITLTDERTSAEEEDDADLDLDGVVTEGEVKAEHRTVVY 267 Query: 224 FYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y G+ +V +L+ KK + I + I++++AM+W + Y E+V + N Sbjct: 268 QYDEGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESVHTYANT 327 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+A+T I Y + K+ ++ GDD REG T+V+S+K+ +P+F Sbjct: 328 INTHEGGTHEEGFRAAMTSLINRYAREKGIIKEKDDNLTGDDIREGLTAVISVKLAEPQF 387 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SEV+ V+ V DGL WLE +P A+ +++K + A+ R AAR+ARD Sbjct: 388 EGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAARKARDNA 447 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK L+ +PGKL+DCS +DP++ E+++VEGDSAGGSAK+GR+ E QAILPLRGKILN Sbjct: 448 RRKSPLESFGMPGKLSDCSSKDPERCEVYIVEGDSAGGSAKRGRNPETQAILPLRGKILN 507 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 VERAR DK L + E+ ++ITA GTGIG+D FD++KLRYHKI++M DADVDG HI TLL+T Sbjct: 508 VERARLDKALGNAEVQSMITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHITTLLMT 566 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M LI NG++Y+ +PPLY I + + D + + + D+ Sbjct: 567 LLFRYMRPLIENGYVYLAQPPLYRIKWSNAAHDYVYSDRERDAKLVAGQAAGRRIPKDNG 626 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA AD +FS LMG++VE RR FIQ+N Sbjct: 627 IQRYKGLGEMDYTELWDTTMDPDNRTLLQVTMDDALAADQIFSVLMGEDVESRRNFIQQN 686 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 687 AKDVRFLDI 695 >gi|116668574|ref|YP_829507.1| DNA gyrase subunit B [Arthrobacter sp. FB24] gi|116608683|gb|ABK01407.1| DNA gyrase subunit B [Arthrobacter sp. FB24] Length = 696 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 266/606 (43%), Positives = 375/606 (61%), Gaps = 31/606 (5%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ + Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 25 AEAAERKGYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 83 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I + L DG V D+GRGIP D+H E EV+MT LHAGGKF Y VSGGLH Sbjct: 84 THIEIVLQADGGVKVVDDGRGIPVDMHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLH 143 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG+SVVNALSS + ++R+G+++ MSF + G L V G + TGT TF P + Sbjct: 144 GVGISVVNALSSRVDTEVRRQGHVWRMSFADGGKPQGSL-VKGEETDQTGTTQTFYPDAS 202 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------------E 217 IF +F+++TL+ R ++++FLN ++I+L D+R E Sbjct: 203 IFESTEFDFETLRARFQQMAFLNKGLRITLTDERREALESSEDGDLDLDNVPTEGEVAAE 262 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENV 273 R + Y G+ +V +L+ KK + I + I++++AM+W + Y E+V Sbjct: 263 YRTVVYQYDDGLLDYVKHLNSGKKVDVVHEDVIAFETEDKDRKIALEMAMQWTNAYSESV 322 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 + N I +GGTH G R+A+T I Y + K+ ++ GDD REG T+V+S+K Sbjct: 323 HTYANTINTHEGGTHEEGFRAAMTSLINRYAREKNIIKEKDDNLTGDDIREGLTAVISVK 382 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 + +P+F QTK KL +SEV+ V+ V DGL WLE +P A+ +++K + A+ R AAR Sbjct: 383 LAEPQFEGQTKTKLGNSEVKGFVQRVVTDGLGDWLERNPGPARDVIRKAISAAQARMAAR 442 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +ARD RRK L+ +PGKL+DCS +DP+K E+++VEGDSAGGSAK+GR+ E QAILPL Sbjct: 443 KARDNARRKSPLESFGMPGKLSDCSSKDPEKCEVYIVEGDSAGGSAKRGRNPETQAILPL 502 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 RGKILNVERAR DK L + E+ ++ITA GTGIG+D FD+ KLRYHKI++M DADVDG HI Sbjct: 503 RGKILNVERARLDKALGNNEVQSMITAFGTGIGED-FDLAKLRYHKIVLMADADVDGQHI 561 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 TLL+T FR M LI NG++Y+ +PPLY I + + D + + Sbjct: 562 TTLLMTLLFRYMRPLIENGYVYLAQPPLYRIKWSNAPHDYVYSDRERDARLLAGQAAGRR 621 Query: 574 LFCDSK 579 + D+ Sbjct: 622 IPKDNG 627 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++PD R+LL+V + DA AD +F+ LMG++VE RR FIQ+N Sbjct: 628 IQRYKGLGEMDYTELWDTTMDPDHRTLLQVTMDDALAADQIFTVLMGEDVESRRNFIQQN 687 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 688 AKDVRFLDI 696 >gi|323444006|gb|EGB01617.1| DNA topoisomerase IV subunit B [Staphylococcus aureus O46] Length = 663 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 263/594 (44%), Positives = 367/594 (61%), Gaps = 14/594 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT+N DGS ++ DNGRG+PT +H + G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 DVTINKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS- 183 SVVNALS WL++ I R+GNIY SF NG + +V TGT+VTF P IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTGTKVTFKPDGTIFKA 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN+D L RL+E +FL +++I+L D RS + R+ Y+ GI+ FVSY++ K+ L Sbjct: 180 STSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVL 239 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 240 H-DVATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS +S V Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAADSVVA 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSE 419 D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 419 KNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I P Sbjct: 479 TIGAGVG-TDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PLY + + K ++Y +E L G ++ L Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGTDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG---DKIKIT 717 + ++ + F F + + R+ + L +++ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDEELNKLQKELGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V+PRRE+I+++ Sbjct: 616 TTLMGDKVQPRREWIEKH 633 >gi|242242634|ref|ZP_04797079.1| DNA topoisomerase [Staphylococcus epidermidis W23144] gi|242233770|gb|EES36082.1| DNA topoisomerase [Staphylococcus epidermidis W23144] Length = 664 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 276/668 (41%), Positives = 393/668 (58%), Gaps = 19/668 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY D I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 TVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S+IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ K+ Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V+S V Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-- 592 PPLY + + K ++Y +E LE+ ++ + + + ++ Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPE 596 Query: 593 --DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 +++ + T + V E E + + + ++E Sbjct: 597 TRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQEDQSILDNKEVQILENE 656 Query: 651 KSWHGSIN 658 K N Sbjct: 657 KYIEEETN 664 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + +S ++ L SKN Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQSKN- 420 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG ++QRYKGLGEMN QLWETT+NP+TR Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETR 598 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633 >gi|126651999|ref|ZP_01724191.1| DNA gyrase subunit B [Bacillus sp. B14905] gi|126591268|gb|EAZ85377.1| DNA gyrase subunit B [Bacillus sp. B14905] Length = 644 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 283/589 (48%), Positives = 396/589 (67%), Gaps = 6/589 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +QN +Y+AD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L G+ Sbjct: 9 EGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSS-KGLHHLVWEIVDNSIDEALAGFCT 67 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ + V DNGRGIP + ++ G A EVIMT LHAGGKF YKVSGGLHG Sbjct: 68 DIQVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYKVSGGLHG 127 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS +++ REG+I+E+ F G L + G + GT F +IF Sbjct: 128 VGASVVNALSVETIVQVHREGHIHEIKFQRGKTIQELKIIGDT-DRNGTTTRFKADPEIF 186 Query: 183 SVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + YD L HR+REL++LN ++I++ D+R E R T Y+GGI ++V +L++ K+ Sbjct: 187 KETTVYEYDILAHRIRELAYLNRGIRITIADEREGEERSTTYHYEGGIRSYVEHLNQSKE 246 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 P+ + G +D IS+++AM++N G+ N+ F NNI +GGTH SG ++ALTR I Sbjct: 247 PIHDPID-VLGEKDGISVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTALTRVIN 305 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K K+ ++ G+D REG T+++S+K PDP+F QTK KL +SEV + + + Sbjct: 306 DYARKGGLLKEADANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQITNALFS 365 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 DG ++ E+P A+ +V+K L A+ R AA++AR+ TRRK L+++SLPGKLADCS + Sbjct: 366 DGFERFMLENPTVARKVVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLADCSSTN 425 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P E+++VEGDSAGGSAK GR R QAILPLRGKILNVE+AR DK+LS+ EI +ITA Sbjct: 426 PADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRAMITAF 485 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGIG++ F++ K RYHKIIIMTDADVDGAHIRTLLLTFFFR + LI G++YI +PPL Sbjct: 486 GTGIGEE-FNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIAQPPL 544 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y D+E+L++ L + G ++ L + Sbjct: 545 YQVKQGKHVEYCYDDETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWD 593 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 66/87 (75%), Gaps = 2/87 (2%) Query: 717 TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L+ + + + ++QRYKGLGEMNA QLW+TT++P+ R+LL+V++ DA +A+ Sbjct: 560 ETLKEILERLPKMPK--PNVQRYKGLGEMNAEQLWDTTMDPEHRTLLQVELDDAIKANQA 617 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 F RLMGDEVEPRR+FI+EN++ + LDI Sbjct: 618 FERLMGDEVEPRRQFIEENAVYANLDI 644 >gi|19909691|dbj|BAB87041.1| DNA gyrase subunit B [Halobacterium salinarum] Length = 575 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 274/555 (49%), Positives = 365/555 (65%), Gaps = 4/555 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 GLHH++YEV+DN+IDE+L GY D I VTL+ DGS +V+D+GRGIP H+E A Sbjct: 1 DARGLHHLVYEVVDNSIDEALAGYCDRIDVTLHDDGSVSVTDDGRGIPVATHEEYDRPAV 60 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 EVI+T LHAGGKF+ KSY+VSGGLHGVGVSVVNALS L + + R+G Y F G Sbjct: 61 EVILTVLHAGGKFDAKSYQVSGGLHGVGVSVVNALSERLAVEVSRDGARYREQFERGEPV 120 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 L G + +D+GT + F P S+IF +++ TL++RLREL+FLNS V+I+L D+R Sbjct: 121 TDLQHVGDS-DDSGTLIRFRPDSEIFETTAYDFSTLENRLRELAFLNSGVEITLTDERGD 179 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 EP + T Y+GGI FV YL+ + L I QG D IS+++AM+ ++ + F Sbjct: 180 EPTQSTFEYEGGIREFVEYLNETRNALHDDVIYFQGEDDGISVEIAMQASEDVQSSTHAF 239 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDK-RSVIGDDCREGFTSVLSIKMP 335 NNI ++GGTHL+G ++ALTR + Y + + ++ GDD REG T+V+S+K P Sbjct: 240 ANNINTREGGTHLTGFKTALTRTVNDYANDNNLLSELDGENLTGDDIREGLTAVISVKHP 299 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 DP+F QTK KL +SEVR +VE VNDGL + EE+P AK +V+ ++A+ R AA++A Sbjct: 300 DPQFEGQTKTKLGNSEVRGIVERAVNDGLGTYFEENPATAKAVVRTAVEAAKARKAAKKA 359 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 +LTRRK L SLPGKLADC + P+ +ELF+VEGDSAGGSAKQGR+ QAILPL G Sbjct: 360 EELTRRKSALGSTSLPGKLADCQSKAPEDAELFVVEGDSAGGSAKQGRNPGFQAILPLGG 419 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 KILNVE+ R D++L E+ +ITALGTGIG D FDI++LRY II+MTDADVDGAHIRT Sbjct: 420 KILNVEKHRLDRILEHDELRHIITALGTGIG-DEFDIDELRYENIIMMTDADVDGAHIRT 478 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL-SEEIEL 574 LLLTFF+R M L+ G++Y +PPLY I + E E + Q + Sbjct: 479 LLLTFFYRHMKPLLEAGYVYAAQPPLYRIRYRGNTYDAMTEADRERIVEEQCNGNPTQVQ 538 Query: 575 FCDSKGVISKNDLRN 589 G ++ L + Sbjct: 539 RFKGLGEMNPQQLWD 553 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 31/40 (77%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 +QR+KGLGEMN QLW+TT++P+ R L R+ + DA+ AD Sbjct: 536 QVQRFKGLGEMNPQQLWDTTMDPENRILKRITVEDAAAAD 575 >gi|251810787|ref|ZP_04825260.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060] gi|251805715|gb|EES58372.1| DNA topoisomerase [Staphylococcus epidermidis BCM-HMP0060] Length = 664 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 272/595 (45%), Positives = 374/595 (62%), Gaps = 16/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY D I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 TVTINQDGSISIEDNGRGMPTGIH-VSGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S+IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ K+ Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V+S V Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + K ++Y +E LE+ I G ++ L Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 590 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 420 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 598 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633 >gi|293366680|ref|ZP_06613356.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus epidermidis M23864:W2(grey)] gi|38604846|sp|Q8CSN9|PARE_STAES RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|84029387|sp|Q5HPI6|PARE_STAEQ RecName: Full=DNA topoisomerase 4 subunit B; AltName: Full=Topoisomerase IV subunit B gi|291318981|gb|EFE59351.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus epidermidis M23864:W2(grey)] Length = 664 Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats. Identities = 272/595 (45%), Positives = 374/595 (62%), Gaps = 16/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY D I Sbjct: 2 NKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDAI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT+N DGS ++ DNGRG+PT +H G AEVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 TVTINQDGSISIEDNGRGMPTGIHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I R+GNIY +F N GI LV TG T+VTF P S+IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTG-TKVTFKPDSEIFK 178 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+D L RL+E +FL ++I+L D RS + RE Y+ GI+ FVSY++ K+ Sbjct: 179 STTTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L G + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 239 LH-DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNE 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V+S V Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 358 SEKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I Sbjct: 478 HTIGAGVG-TDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + K ++Y +E LE+ I G ++ L Sbjct: 537 PPLYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGF-ILQRYKGLGEMNPEQLWE 590 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 362 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 420 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 421 --TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 479 TIGAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 539 LYKLEKGKGKNKKVEYAWTDEELENLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 598 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+++ Sbjct: 599 TLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKH 633 >gi|313835161|gb|EFS72875.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2] gi|314929137|gb|EFS92968.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1] gi|314970916|gb|EFT15014.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3] Length = 690 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 271/583 (46%), Positives = 364/583 (62%), Gaps = 15/583 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I Sbjct: 38 TVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTI 96 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG Sbjct: 97 QVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVG 156 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDI 181 SVVNAL++ + ++R+G + SF G D PL G + GT V F PS +I Sbjct: 157 SSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCE-GTTVRFQPSDEI 215 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235 F F Y+TL +R RE++FLN ++I L D+R P YK G++ +V + Sbjct: 216 FDAIVFGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDYVRF 275 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 276 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYTTSVHTFANAINTIEGGAHEEGFR 335 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 336 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 395 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 396 SFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPG 455 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 456 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 515 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 516 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 574 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +Y+ +PPL+ + S + + D L L+ +L Sbjct: 575 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLP 617 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 622 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 681 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 682 AKDVRFLDI 690 >gi|293363557|ref|ZP_06610313.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] gi|292552906|gb|EFF41660.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma alligatoris A21JP2] Length = 646 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 266/648 (41%), Positives = 381/648 (58%), Gaps = 18/648 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YDA +I+ L+GL+ V+KRP MYIG T + GLHHMI+E++DN++DE + G+A I Sbjct: 3 KAHNYDASNIKFLEGLEHVRKRPGMYIG-TTSKDGLHHMIWEIVDNSVDECMAGFASKIF 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 +T+ D V DNGRGIP H+ GISA EV++T+L+AGGKF +YKVSGGLHGVG Sbjct: 62 ITITNDNRIIVEDNGRGIPVGTHERFGISALEVVLTKLNAGGKFESNAYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS +K +KR+G IY F N G V G GN+TGT++ F P I Sbjct: 122 SVVNALSDSMKAWVKRDGKIYHAEFANGGHTVQATHVIGEYEGNETGTKIEFHPDFSIME 181 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ + + ++++ LN S+ +S+ D R + Y GI +V L+ P+ Sbjct: 182 NVPFDKELIIDHAKQIAHLNKSLFVSVKDLR--DDSYEEFKYDNGIIDYVRELNEGYSPI 239 Query: 244 MQSPIRIQGS--------RDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 I +G I +++A ++ +D N++ + NNI +GGTH+SG Sbjct: 240 NPEIIFAEGEFLSVHNGQERQIGVEVAAQYLSDFPRSNIISYANNISTHEGGTHVSGFYD 299 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ++ R + +Y ++ K D +D EG T+++S+K PDP+F QTK KL S + R Sbjct: 300 SVMRIVNNYAIENGIIKTDAEKFSREDLTEGLTTIISVKHPDPQFEGQTKGKLGSKDARM 359 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V ++ L E+PL AK I++ + A R AA ARD +RK D LPGKL Sbjct: 360 AVNKVFSEVYERMLNENPLIAKKIIENAIYARKGRLAANAARDNAKRKSAFDNGGLPGKL 419 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ ++ + SEL+LVEG+SAGGSAK GR R QAILPLRGK+LNVERAR DK+++++EI Sbjct: 420 ADCATKNAELSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDKVVNNEEI 479 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L+TALGT +G D+F+INKLRYHKI+IMTDADVDGAHIRTLLLTFF+R LI GF+ Sbjct: 480 MSLVTALGTSLG-DTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFV 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593 YI +PPLY I + K+++Y ++ E+ + +++I G + + L D Sbjct: 539 YIAQPPLYKIQQNKTVEYAYNDAQKEEITSKLNPNQKINIQRYKGLGEMDPDQLWETTMD 598 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 L + + ++ N E +E A + N Sbjct: 599 PKNRKMLQVQIEDAYKADWAFSTLMG--ENVEPRREFIEKNAKYVKNI 644 Score = 164 bits (414), Expect = 8e-38, Method: Composition-based stats. Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 I++QRYKGLGEM+ QLWETT++P R +L+V+I DA +AD FS LMG+ VEPRREFI+ Sbjct: 576 INIQRYKGLGEMDPDQLWETTMDPKNRKMLQVQIEDAYKADWAFSTLMGENVEPRREFIE 635 Query: 794 ENSLPS-ALD 802 +N+ +D Sbjct: 636 KNAKYVKNID 645 >gi|289550859|ref|YP_003471763.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01] gi|315658360|ref|ZP_07911232.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus lugdunensis M23590] gi|289180391|gb|ADC87636.1| Topoisomerase IV subunit B [Staphylococcus lugdunensis HKU09-01] gi|315496689|gb|EFU85012.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Staphylococcus lugdunensis M23590] Length = 666 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 267/599 (44%), Positives = 375/599 (62%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MTVN-KKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+N D S T+ DNGRG+PT +H G +VI T LHAGGKF Q YK SGGL Sbjct: 59 GDEINVTINKDNSITIEDNGRGMPTGIHAS-GKPTVQVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY+ SF N G+ L V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKNGGLPATGL-VKAGKTKKTGTKVTFKPDP 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF F++ TL RL+E +FL +++I L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKASTTFSFQTLSERLQESAFLLKNLKIKLTDLRSGKEREELYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTMFSGQSHGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K+ +++ G+D REG T+++S+++P+ +F QTK KL ++E RS V Sbjct: 296 VFNDYARRINELKEKDKNIDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTTEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V + L +LEE +K +VKK + A R+AAR+ARD + +K L GKL Sbjct: 356 DSVVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKARDDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G D F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + +G K ++Y ++ L+ + G ++ L Sbjct: 535 FIALPPLYKLEKGKGKAKQVEYAWTDDELDKLQQSLGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKARDDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 + ++ + F F + + R+ + L G ++ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKAKQVEYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG ++QRYKGLGEMN QLWETT+NPDTR+L+RV++ D ++ Sbjct: 558 WTDDELDKLQQSLGKGFTLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 618 TTLMGDKVAPRREWIERH 635 >gi|21309845|gb|AAM46064.1|AF263924_3 DNA gyrase beta subunit [Peanut witches'-broom phytoplasma] Length = 648 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 271/649 (41%), Positives = 390/649 (60%), Gaps = 23/649 (3%) Query: 1 MSDNIQNS-----SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 MS N + + Y A SI+IL+GL+AV+K+P MYI G +H+I+E++DN+IDE Sbjct: 1 MSKNDKKNKENLGEYSASSIEILEGLEAVRKKPGMYIDSV-TMKGAYHLIWEIIDNSIDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF----NQ 111 +L GYA I + + D +VSDNGRGIP D+H + SA E I+T LHAGGKF N Sbjct: 60 ALAGYATEIILKIFPDNVVSVSDNGRGIPVDIHPKTKKSAVETILTTLHAGGKFKNAPNS 119 Query: 112 KSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGT 171 K+Y SGG HGVG SVVNALS+W + I G IY + G+ L + G+ N GT Sbjct: 120 KNYSYSGGQHGVGASVVNALSTWFTVEICLNGKIYYQKYEKGVPTTSLQIIGNT-NKRGT 178 Query: 172 EVTFLPSSDIFS---VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGG 228 + FLP IF ++ D L+ R+++L+FLN +V++ + D R P+ I + KGG Sbjct: 179 NIKFLPDETIFQDIKNTPYSLDVLKKRVQQLAFLNKNVKLIIEDLRLEPPQIINFYSKGG 238 Query: 229 IEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 I+ ++ YL+ +KK L Q P + S +NI +++A ++N+ Y N+ F NNIP +GGTH Sbjct: 239 IQEYLQYLNENKKVLNQ-PFYQESSENNIFLEIAFQYNENYISNIYSFVNNIPTHEGGTH 297 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 G + AL R ++ Y + K S IG+D EG T+++++K DP F QTK +L Sbjct: 298 EEGFKMALNRILSKYAKDKN-LLKKDLSFIGEDTLEGITAIIALKHYDPLFEGQTKARLG 356 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 + ++R V L ++L E+P EAK I+ K L A+ R AA++AR++TR+K LD Sbjct: 357 NYDMRQFVSKHFGIALESYLLENPQEAKKIIDKCLLAAKARVAAKKAREITRKKSPLDTL 416 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 S KLADC +DP +EL++VEGDSAGGSAKQGR QAILPLRGKI+NVE+AR +K+ Sbjct: 417 SFASKLADCRTKDPSLAELYIVEGDSAGGSAKQGRDSSFQAILPLRGKIINVEKARLNKI 476 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 L + EI +LI + GTG ++ F+I+K RYHKIIIMTDADVDGAHIRTLLLTFFFRQ L Sbjct: 477 LVNNEIISLIQSFGTGFDKE-FNISKARYHKIIIMTDADVDGAHIRTLLLTFFFRQFRPL 535 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 I N ++Y +PPLY + K + Y E+ L++++ ++ S++ + G ++ L Sbjct: 536 IENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFMSRKNNSQKIVVQRYKGLGEMNAEQL 595 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 +D + + +E I + E + + Sbjct: 596 WET-----TMDPATRTLLQVKLEDAVEADRIFTMLMGEEVSNRKIFIQE 639 Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + + +++ + + +K ++ S ++ V + Sbjct: 465 IINVEKARLNKILVNNEIISLIQSFGTGFDKEFNISKARYHKIIIMTDADVDGAHIRTLL 524 Query: 681 SIFSFGSKYKRIFSNRIEENYL----TILSLICNGDKIKITGPCSLLDTIFSIGRKG--- 733 F F R F IE NY+ L + N KI L RK Sbjct: 525 LTFFF-----RQFRPLIENNYIYFAQPPLYKVQNNKKISYFYTEQDLKNFM--SRKNNSQ 577 Query: 734 -ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 I +QRYKGLGEMNA QLWETT++P TR+LL+VK+ DA +AD +F+ LMG+EV R+ FI Sbjct: 578 KIVVQRYKGLGEMNAEQLWETTMDPATRTLLQVKLEDAVEADRIFTMLMGEEVSNRKIFI 637 Query: 793 QENSLPSALDI 803 QEN+ + +DI Sbjct: 638 QENATYADIDI 648 >gi|73662713|ref|YP_301494.1| DNA topoisomerase IV subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495228|dbj|BAE18549.1| topoisomerase IV subunit B [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 666 Score = 548 bits (1411), Expect = e-153, Method: Composition-based stats. Identities = 271/670 (40%), Positives = 387/670 (57%), Gaps = 17/670 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L G+ Sbjct: 1 MAMN-KKNNYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT+N D S T+ DNGRG+PT +H G +VI T LHAGGKF Q YK SGGL Sbjct: 59 GSEIQVTINKDESITIEDNGRGMPTGIH-TSGKPTVQVIFTILHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY SF G L V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIYRDGNIYTQSFAQGGKPTTGL-VKHGKTKKTGTKVTFKPDP 176 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FNYD L RL+E +FL ++I+L D R+ + RE Y+ GI+ FV+Y++ Sbjct: 177 EIFKSATSFNYDVLSERLQESAFLLKRLKITLKDLRAGKEREDVFHYEDGIKEFVAYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G +NI +++A ++ND Y E +L F NN+ KDGGTH G +SA+TR Sbjct: 237 GKEVLHDVAD-FSGEANNIEVEVAFQYNDQYSEGILSFVNNVRTKDGGTHEVGFKSAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K+ +++ G+D REG T+++SI++P+ +F QTK KL + E RS V Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAIISIRIPEELLQFEGQTKSKLGTPEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V D L +LEE +K +VKK L A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVADKLPYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR D + ++EI Sbjct: 416 TPAQSKNTEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G + F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAGRV 534 Query: 535 YIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +I PPLY + + + ++Y +E LE ++ + + + Sbjct: 535 FIALPPLYKLEKGKGASRKIEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNADQLWETT 594 Query: 591 ID-DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 ++ D + ++ + K E + + + L+ + Sbjct: 595 MNPDTRTLIRVQVEDELRSSKRVTTLMGDKVAPRREWIENHVEFGLQEEQSILDNNEIQI 654 Query: 650 EKSWHGSINN 659 + H + Sbjct: 655 LEQEHPNEEE 664 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKALKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 + ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TEKKELYLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLDDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGNEFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVEAGRVFIALPP 540 Query: 704 ILSLICNG---DKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L KI+ L+ + KG S+QRYKGLGEMNA QLWETT+NPDTR Sbjct: 541 LYKLEKGKGASRKIEYAWTDEELEKLQKKLGKGFSLQRYKGLGEMNADQLWETTMNPDTR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV++ D ++ + LMGD+V PRRE+I+ + Sbjct: 601 TLIRVQVEDELRSSKRVTTLMGDKVAPRREWIENH 635 >gi|256823911|ref|YP_003147871.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547] gi|256687304|gb|ACV05106.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547] Length = 701 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 273/687 (39%), Positives = 391/687 (56%), Gaps = 60/687 (8%) Query: 1 MSDN-----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE 55 M+D Q SYDA S+Q+L+GL+AV+KRP MYIG T GE GLHH+++E++DNA+DE Sbjct: 1 MADQPIQTDQQAPSYDASSLQVLEGLEAVRKRPGMYIGST-GERGLHHLVWEIVDNAVDE 59 Query: 56 SLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYK 115 L G+AD I VT+ D + V DNGRGIPTD+H +EGIS E+++T+LHAGGKF SY Sbjct: 60 HLAGHADRIEVTILPDNAIRVVDNGRGIPTDVHAKEGISGVELVLTQLHAGGKFGGDSYA 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-AGNDTGTEVT 174 VSGGLHGVG SVVNALSS ++ ++++G+++ SF G+ D PL A + TGT +T Sbjct: 120 VSGGLHGVGSSVVNALSSRFEVEVRQKGHVFRQSFTVGVPDAPLSKDEEIAEDVTGTTIT 179 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------- 215 + PS++IF +++TL+ R ++ FLN + I L D+R Sbjct: 180 YWPSAEIFDTTVIDFETLRARFQQTCFLNKGLTIQLTDERPRVTDADDEGLDDVDTDIAE 239 Query: 216 --------------------------PEPREITMFYKGGIEAFVSYLDRHKK--PLMQSP 247 +PR +T Y G+ +V +L+ KK P+ Sbjct: 240 GLEEHEDGTPIEDGQPDADQPATAAATKPRTVTYRYDDGLLDYVRHLNNSKKTQPVNDEI 299 Query: 248 IRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 I + + ++AM+W Y E+V + N++ +GGTH G R+ALTR + + Sbjct: 300 IAFETEDSERMLQCEVAMQWTSSYSESVHTYANSVNTHEGGTHEEGFRAALTRLVNEFAR 359 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLS 365 + K+ ++ G+D REG T+V+S+K+ +P+F QTK KL +SEV+ V+ + D L Sbjct: 360 ANKLLKEKDPALTGEDVREGLTAVISVKLGEPQFEGQTKTKLGNSEVKGFVQRAMADQLG 419 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKS 425 WLE HP E K IV K + A+ R AAR+AR+ TRRKG+L+ L KL DC DP S Sbjct: 420 HWLEAHPGEGKAIVGKAVQAAQARLAARKAREATRRKGLLESGGLAAKLKDCQSNDPTVS 479 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 E+F+VEGDSAGGSA GR+ NQAILPLRGKILNVE+AR D++LS+ E+ LI++ GTGI Sbjct: 480 EIFIVEGDSAGGSAIAGRNPFNQAILPLRGKILNVEKARLDRILSNTEVQALISSFGTGI 539 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G++ FDI + RYHKI++M DADVDG HIRTLLLT FR M LI +G++Y+ +PPLY + Sbjct: 540 GEE-FDITRARYHKIVLMADADVDGMHIRTLLLTLLFRFMKPLIEHGYVYLAQPPLYRLK 598 Query: 546 RGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 + + + + + N+ + Sbjct: 599 WTNAEHDFAFTDRERDALTEAGVAKGRRLPKENGVQRYKGLGEMNYQELWETTMDPDNRV 658 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEIN 631 + A VF+ +++ Sbjct: 659 LRQVTMD--DAAAADQVFSVLMGEDVE 683 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LWETT++PD R L +V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 633 VQRYKGLGEMNYQELWETTMDPDNRVLRQVTMDDAAAADQVFSVLMGEDVESRRSFIQRN 692 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 693 AHDVRFLDI 701 >gi|314922686|gb|EFS86517.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1] Length = 685 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 265/561 (47%), Positives = 357/561 (63%), Gaps = 13/561 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D Sbjct: 32 TTVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDT 90 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGV Sbjct: 91 IQVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGV 150 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G SVVNAL++ + ++R+G + SF G D PL + + GT V F PS +I Sbjct: 151 GSSVVNALAAHFIVEVRRDGYHWRQSFSLGEPDGPLEQLEALGPDDHEGTTVRFQPSDEI 210 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSY 235 F F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V + Sbjct: 211 FDAIVFDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRF 270 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 271 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFR 330 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG +V+SIK+ +P+F QTK KL ++E + Sbjct: 331 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLIAVVSIKLTEPQFEGQTKTKLGNAEAK 390 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 391 SFVQKALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARSRKGLLGSTSLPG 450 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 451 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 510 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 511 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 569 Query: 533 FLYIIKPPLYGITRGKSLQYV 553 +Y+ +PPL+ + S + Sbjct: 570 HVYLAQPPLFRLRWTNSPHEL 590 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|328905793|gb|EGG25569.1| DNA gyrase, B subunit [Propionibacterium sp. P08] Length = 681 Score = 547 bits (1410), Expect = e-153, Method: Composition-based stats. Identities = 271/583 (46%), Positives = 364/583 (62%), Gaps = 15/583 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I Sbjct: 29 TVDGSYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTI 87 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG Sbjct: 88 QVELLDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVG 147 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLPSSDI 181 SVVNAL++ + ++R+G + SF G D PL G + GT V F PS +I Sbjct: 148 SSVVNALAAHFVVEVRRDGYHWRQSFTLGEPDGPLEQLEALGPDDCE-GTTVRFQPSDEI 206 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235 F F Y+TL +R RE++FLN ++I L D+R P YK G++ +V + Sbjct: 207 FDAIVFGYETLSNRFREMAFLNKGLRIVLTDRRADHADEEGNPVHEDFLYKEGLKDYVRF 266 Query: 236 LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L + + + I ++ R + +++AM+WN Y +V F N I +GG H G R Sbjct: 267 LTGTRDVINPTIISLESHRPEEGMGLEIAMQWNTSYTTSVHTFANAINTIEGGAHEEGFR 326 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E + Sbjct: 327 AALTNTVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAK 386 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 S V+ +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPG Sbjct: 387 SFVQKTLNEKLSDWFEENPNEGKNIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPG 446 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL DCS P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ Sbjct: 447 KLKDCSSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSE 506 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 I ++I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G Sbjct: 507 TIESIINALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAG 565 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +Y+ +PPL+ + S + + D L L+ +L Sbjct: 566 HVYLAQPPLFRLRWTNSPHELAYSDEERDLLRADGLAHAKKLP 608 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 613 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 672 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 673 AKDVRFLDI 681 >gi|116617179|ref|YP_817550.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096026|gb|ABJ61177.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 672 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 277/626 (44%), Positives = 396/626 (63%), Gaps = 12/626 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + + Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 30 TVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 88 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 89 SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 148 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSD 180 GVG SVVNALS+ L +++ R+ +Y M F G + + + GT V F P +D Sbjct: 149 GVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPDTD 208 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +NY TL R+REL+FLN ++IS+ DKR EP + + ++GGI+ +V YL+ Sbjct: 209 IFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFHFEGGIKEYVQYLNED 268 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + P+ ++G + I ++ A+++ +++ F NNI +GGTH +G ++ALTR Sbjct: 269 KQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 328 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y KS K S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 329 INDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 388 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P AK IV+K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 389 FSETFSRFMMENPNVAKQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 448 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNV +A +++L+++EI +L T Sbjct: 449 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVLANEEIRSLFT 508 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ G++YI +P Sbjct: 509 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 567 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596 PLYG+ KS+ Y+ +E LE YL + + G + + L + DA Sbjct: 568 PLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPKVQRYKGLGEMDYDQLADTTMDAQN 627 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + E + + Sbjct: 628 -----RRLLRVDPADAEEAEAVIDML 648 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++ R LLRV DA +A+ + LMG +V PRR+FI++N Sbjct: 604 VQRYKGLGEMDYDQLADTTMDAQNRRLLRVDPADAEEAEAVIDMLMGGDVPPRRKFIEDN 663 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 664 AVFVENLDI 672 >gi|15826870|ref|NP_301133.1| DNA gyrase subunit B [Mycobacterium leprae TN] gi|221229348|ref|YP_002502764.1| DNA gyrase subunit B [Mycobacterium leprae Br4923] gi|13638292|sp|Q59533|GYRB_MYCLE RecName: Full=DNA gyrase subunit B gi|13092417|emb|CAC29513.1| putative DNA gyrase subunit B [Mycobacterium leprae] gi|219932455|emb|CAR70098.1| putative DNA gyrase subunit B [Mycobacterium leprae Br4923] Length = 678 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 269/655 (41%), Positives = 383/655 (58%), Gaps = 41/655 (6%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + Y A SI IL+GL+AV+KRP MY+G T GE GLHH+I+EV+DN++DE++ GYA Sbjct: 3 AQRKAQDEYGAASITILEGLEAVRKRPGMYVGST-GERGLHHLIWEVVDNSVDEAMAGYA 61 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN--QKSYKVSGG 119 + V L DGS V+DNGRGIP +H G+ +V+MT+LHAGGKF Y VSGG Sbjct: 62 TQVDVRLFDDGSVEVADNGRGIPVAVHA-TGVPTVDVVMTQLHAGGKFGGKDSGYNVSGG 120 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVGVSVVNALS+ +++ IKR+G + + + ++ G A TGT + F Sbjct: 121 LHGVGVSVVNALSTRVEVDIKRDGYEWSQFYDKAVP--GILKQGEATEATGTTIRFWADP 178 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------- 214 DIF +++ T+ R++E++FLN + I+L+D+R Sbjct: 179 DIFETTKYDFGTVARRIQEVAFLNKGLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEE 238 Query: 215 -------SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 + R T Y GG+ FV +++R K P+ QS I G +++AM+WN Sbjct: 239 KSTESSAPHKVRHRTFHYPGGLVDFVKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQWNG 298 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 GY E+V F N I +GGTH G RSALT + Y + K ++ GDD REG Sbjct: 299 GYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLA 358 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+S+K+ +P+F QTK KL ++EV+S V+ N+ L W E +P++AK +V K + ++ Sbjct: 359 AVISVKVSEPQFEGQTKTKLGNTEVKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQ 418 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R AAR+AR+L RRK D+ LPGKLADC DP+ SEL++VEGDSAGGSAK GR Sbjct: 419 ARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMF 478 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPLRGKI+NVE+AR D++L + E+ +ITALGTGI D FDI++LRYHKI++M DAD Sbjct: 479 QAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDISRLRYHKIVLMADAD 537 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDG HI TLLLT FR M LI +G++++ +PPLY + + +S D L+ Sbjct: 538 VDGQHISTLLLTLLFRFMRPLIEHGYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETG 597 Query: 568 LSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 L ++ + I + +D + + + ++ A + Sbjct: 598 LKLGKKINKEDG--IQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADEL 650 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 6/87 (6%) Query: 722 LLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LL+T +G+K I+ +QRYKGLGEM+A +LWETT++P R L +V + DA+ AD+LF Sbjct: 593 LLETGLKLGKK-INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELF 651 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++V+ RR FI N+ LD+ Sbjct: 652 SILMGEDVDARRSFITRNAKDVRFLDV 678 >gi|302535567|ref|ZP_07287909.1| DNA gyrase subunit B [Streptomyces sp. C] gi|302444462|gb|EFL16278.1| DNA gyrase subunit B [Streptomyces sp. C] Length = 666 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 283/667 (42%), Positives = 394/667 (59%), Gaps = 25/667 (3%) Query: 1 MSD--NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 M+D + +YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L Sbjct: 1 MADSGDSNEKNYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 G+AD I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSG Sbjct: 60 GHADTIDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPS 178 GLHGVGVSVVNALS+ + + +K +G+ + + G+ PL +TGT VTF Sbjct: 120 GLHGVGVSVVNALSTKVAVEVKTDGHRWTQDYKLGVPTAPLAKNEETA-ETGTSVTFWAD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREI 221 DIF +++++TL R +E++FLN + ++L D+R P R + Sbjct: 179 GDIFETTEYSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAAEPSARTV 238 Query: 222 TMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278 FY+GGI FV Y R + + + I ++ +S+++AM+WN Y E V F N Sbjct: 239 KYFYEGGIVDFVKYLNSRKGELIHPTVIDVESEDKERMLSVEIAMQWNSQYTEGVYSFAN 298 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 I +GGTH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+ Sbjct: 299 TIHTHEGGTHEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQ 358 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 F QTK KL ++E ++ V+ V++ L+ W + +P+EA IV+K + A+ R AAR+ARDL Sbjct: 359 FEGQTKTKLGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIVRKAIQAATARVAARKARDL 418 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKIL Sbjct: 419 TRRKGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKIL 478 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+AR DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLL Sbjct: 479 NVEKARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLL 537 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TF FR M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 538 TFLFRFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDS 597 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 N + + + QA D E S + Sbjct: 598 IQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRN 657 Query: 639 ANRLNFI 645 A + F+ Sbjct: 658 AKDVRFL 664 Score = 140 bits (354), Expect = 7e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 580 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 639 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 640 SVLMGEDVEARRSFIQRNAKDVRFLDI 666 >gi|291543406|emb|CBL16515.1| DNA gyrase subunit B [Ruminococcus sp. 18P13] Length = 649 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 274/578 (47%), Positives = 385/578 (66%), Gaps = 12/578 (2%) Query: 1 MSDNIQ----NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 MS+ Q YD IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+ Sbjct: 1 MSETEQIKPGAQQYDESQIQVLEGLEAVRKRPGMYIGTTGSG-GLHHLVYEIVDNSIDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GY I V + V+DNGRGIPT +H +EGISAA V+ T LHAGGKF YKV Sbjct: 60 LAGYCTHIQVEILPGDIIRVTDNGRGIPTGIHPKEGISAATVVYTVLHAGGKFGGGGYKV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 +GGLHGVG SVVNALS WL+L +K +++ F G PL + G + GT V F Sbjct: 120 AGGLHGVGASVVNALSEWLELTVKDGSHVHFQRFERGNYAEPLKIIGDTT-EHGTSVMFK 178 Query: 177 PSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLI-DKRSPEPREITMFYKGGIEAFVS 234 P ++IF F+Y+ L R+RE +FLN+ + I L + P+ M Y+GGI F+ Sbjct: 179 PDAEIFEETTVFDYEVLLKRMREQAFLNAGLTIELSDQRDPANPQGEKMCYEGGIRQFIE 238 Query: 235 YLDRHK--KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 ++ + + + L + I GS+ + ++++AM++ND Y+E +L F NN+ DGG H G Sbjct: 239 HIHKTRGLESLSEQVIYFTGSKGDNAVEIAMQYNDSYNELILSFANNVHTIDGGMHELGF 298 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 R+ALT+ + Y ++ KD ++G+D REG T+++S+K+ D +F SQTK KL + E+ Sbjct: 299 RNALTKTLNEYGKRFG-LLKDDSKLMGEDVREGLTAIISVKLTDCQFESQTKVKLGNPEI 357 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + VES V++ L +LEE+P A+ I K L A R+AA++AR+ RRK ++ ASLPG Sbjct: 358 KPFVESIVSEKLMNYLEENPAVARAIFDKSLAAQRAREAAKKARETARRKTAMESASLPG 417 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCSERD + +E+++VEGDSAGGSAK+GR R QAILPL GK+LNVE+AR DK+ ++ Sbjct: 418 KLADCSERDIEMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDKVYCNE 477 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 ++ ++TALGT IG+D FDI+KLRY K+IIM DADVDG+HIRTLLLTFFFR M LI NG Sbjct: 478 KLMPVVTALGTSIGED-FDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLITNG 536 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 +YI +PPL+ + +GK+ +Y +E + Y+ + Sbjct: 537 NIYIAQPPLFRVAKGKTFKYAFSDEERDKYIAQFNAES 574 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 42/71 (59%), Positives = 60/71 (84%), Gaps = 1/71 (1%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + +QRYKGLGEM+A QLW+TT+NPDTR++++V++ DA +AD+ FS LMGD+V PRREFI+ Sbjct: 579 VEVQRYKGLGEMDAHQLWDTTMNPDTRTMIKVEMADAVKADETFSILMGDKVAPRREFIE 638 Query: 794 ENSLPS-ALDI 803 +N+ + LDI Sbjct: 639 KNAKYAQNLDI 649 >gi|295396857|ref|ZP_06806985.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC 11563] gi|294974883|gb|EFG50582.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans ATCC 11563] Length = 707 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 269/686 (39%), Positives = 381/686 (55%), Gaps = 19/686 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 ++ S+YD SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN+IDE+ GYA Sbjct: 16 TNQNNKSTYDESSIQVLEGLEAVRKRPGMYIGSTDA-RGLHHLVYEIVDNSIDEAFSGYA 74 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D ITVTL DGS V+DNGRG+P H G EVI+T LHAGGKF YK SGGLH Sbjct: 75 DHITVTLAKDGSAIVTDNGRGMPIGKH-TSGKPTVEVILTVLHAGGKFGGSGYKTSGGLH 133 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALSS + R+G Y F NG +TGT++ F P ++I Sbjct: 134 GVGSSVVNALSSKFIATVHRDGKEYYQEFTNGGKPGKPKTKAFKSKNTGTKIQFYPDAEI 193 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F F+ T++ LRE +FL ++I ID+ + T Y GI+AFV YL+ K Sbjct: 194 FGNIKFDPSTIREHLRESAFLLKDLRIDFIDEINETE--ETFHYAEGIKAFVDYLNEDKD 251 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + QG + I I+LA ++NDGY E VL F NN+ DGGTH SG+R+ LT+ Sbjct: 252 VLH-DVVFFQGVENGIEIELAFQYNDGYSETVLSFVNNVRTADGGTHESGMRTGLTKSFN 310 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y K K ++++ G D REG+T+VLS+++P+ +F QTK KL + + RS + Sbjct: 311 EYARKVDLLKTKEKNLEGSDVREGYTAVLSLRVPEEILQFEGQTKSKLGTPQARSASDKI 370 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418 V++ L+ +L E+ A+++V+K L A RDAAR+AR+ +R KG L GKL Sbjct: 371 VSENLAVYLIENGETAQMLVRKALKAREARDAARKAREASRGAKGKRKEVLLSGKLTPAQ 430 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+ KK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A +L ++E+ T+I Sbjct: 431 GRNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKASIQDILKNEELNTII 490 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G + F++ Y K+IIMTDAD DGAHI+ LLLTFFFR M L+ G +Y+ Sbjct: 491 YTIGAGVGAE-FEVEDANYDKVIIMTDADTDGAHIQVLLLTFFFRYMKPLVEAGKVYLAM 549 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 PPLY ++ + + +Y ++ L+ I G ++ + L Sbjct: 550 PPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGKGY-ILQRYKGLGEMNADQLWET---- 604 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 +D + V + + +A ++ E + Sbjct: 605 -TMDPETRTLVRVTIDDLSLAEKRVSVLMGNKVEPRRKWIEDNVAFTMDEEDTLLENASD 663 Query: 655 GSINNSDILVKRIARGVQEQFVLEGS 680 + + +V+ + Q Sbjct: 664 NDAGDKEEVVEILENQNQTSVTANED 689 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ +L + I + N D ++ + Sbjct: 469 VLNTEKASIQDILKNEELNTIIYTIGAGVGAEFEVEDANYDKVIIMTDADTDGAHIQVLL 528 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC---SLLDTIFSIGRKGISMQ 737 F F + + ++ + + K +IT L + KG +Q Sbjct: 529 LTFFFRYMKPLVEAGKVYLAMPPLYKVSKGKGKNEITEYAWTDDELKAVTDKVGKGYILQ 588 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT++P+TR+L+RV I D S A+ S LMG++VEPRR++I++N Sbjct: 589 RYKGLGEMNADQLWETTMDPETRTLVRVTIDDLSLAEKRVSVLMGNKVEPRRKWIEDN 646 >gi|116494894|ref|YP_806628.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334] gi|116105044|gb|ABJ70186.1| DNA topoisomerase IV subunit B [Lactobacillus casei ATCC 334] Length = 670 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 265/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ + +E FIN G D L G GT +TF P IF Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL ++ I+L D+R+ + + Y G+ +FV YL+ K Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K ++ +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLRERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D LS +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FD+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + RI + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 N Sbjct: 632 N 632 >gi|239631506|ref|ZP_04674537.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525971|gb|EEQ64972.1| DNA topoisomerase IV subunit B [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 670 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ + +E FIN G D L G GT +TF P IF Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL ++ I+L D+R+ + + Y G+ +FV YL+ K Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K+ +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D LS +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FD+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + RI + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 N Sbjct: 632 N 632 >gi|70726555|ref|YP_253469.1| DNA topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435] gi|68447279|dbj|BAE04863.1| topoisomerase IV subunit B [Staphylococcus haemolyticus JCSC1435] Length = 666 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 267/599 (44%), Positives = 378/599 (63%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ ++ Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MATK-NSNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N D S ++ DNGRG+P+ +H G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTINQDNSISIEDNGRGMPSGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY+ SF N G+ + L V TGT+VTF P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKNGGVPASGL-VKSGKTKKTGTKVTFKPDP 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN++TL RL+E +FL +++I+L D R+ + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKATTTFNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G+ + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K+ +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V+D L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSDKLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G D F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + + K ++Y ++ LE + G ++ L Sbjct: 535 FIALPPLYKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGF-MLQRYKGLGEMNPEQLWE 592 Score = 150 bits (380), Expect = 6e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 364 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 422 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 423 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 480 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 481 TIGAGVGNDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 540 Query: 704 ILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L G ++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 541 LYKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETR 600 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV+I D ++ + LMGD+V PRRE+I+ + Sbjct: 601 TLIRVQIEDEMRSSKRVTTLMGDKVAPRREWIESH 635 >gi|160932418|ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753] gi|156868377|gb|EDO61749.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753] Length = 646 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 278/611 (45%), Positives = 398/611 (65%), Gaps = 12/611 (1%) Query: 1 MSDN---IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M +N N Y A IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DNAIDE+L Sbjct: 1 MENNEITQTNEEYGASDIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEIVDNAIDEAL 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVS 117 GY D I V + V DNGRGIP + + GI A V+ T LHAGGKF YKVS Sbjct: 60 AGYCDKIDVRILPGDIIVVEDNGRGIPVGIQPKMGIPAVTVVFTVLHAGGKFGGGGYKVS 119 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLP 177 GGLHGVG SVVNALS+WL++ + +IY F G L + G TGT+VTF Sbjct: 120 GGLHGVGASVVNALSTWLEVEVSDGAHIYRQRFERGKTITDLEMIGDTT-KTGTKVTFQA 178 Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR-EITMFYKGGIEAFVS- 234 +IFS + Y+TL+ RLRE +FLN+ + I L+D+R PE R + Y+GGI +FV Sbjct: 179 DPEIFSESTVYEYETLETRLREQAFLNAGIHIELVDERDPENRVQKNFLYEGGISSFVEF 238 Query: 235 -YLDRHKKPLMQSPIRIQG--SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 + + + + I ++G + + ++AM++N+ Y+E ++ F NNI DGGTH G Sbjct: 239 LHKRKSLEVIHPDIIHVKGALTDGSAEAEVAMQYNESYNELLISFANNIHTTDGGTHEEG 298 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 + ALTR + Y K K +++ G+D REG T+++S+K+ + +F QTK KL ++E Sbjct: 299 FKRALTRIMNDYARKYNILKDGDKNLSGEDVREGLTAIISVKLKEAQFEGQTKAKLGNTE 358 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 +R++V++ +++ LSA+LEE+P A+ I +K + AS R+AAR+AR+L RRK L+ A+LP Sbjct: 359 IRTLVDNLISEKLSAYLEENPATARAIFEKAMAASRAREAARKARELVRRKSALESAALP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC R+P+++E+++VEGDSAGGSAK GR R+ QAILPL GK+LNVE+AR DK+ + Sbjct: 419 GKLADCQSRNPEETEIYIVEGDSAGGSAKGGRDRKFQAILPLWGKMLNVEKARLDKVYGN 478 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 ++ +ITALG GIG D FD+ KLRY K+IIM DADVDG+HIRTLLLTFFFR M LI Sbjct: 479 DKLMPVITALGCGIG-DEFDLAKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMKPLIEE 537 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 G +YI +PPLY +T+GK+ Y ++ + L +++ I+ + + S+ + Sbjct: 538 GHIYIAQPPLYRLTKGKNHYYAYSDKERDQMLKEMTVTAPIQRYKGLGEMDSEQLWETTM 597 Query: 592 DDALKIDKLIK 602 + +I ++ Sbjct: 598 NPETRIMLKVE 608 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM++ QLWETT+NP+TR +L+V++ DA+ AD+ F+ LMGD+VEPRREFI++N Sbjct: 578 IQRYKGLGEMDSEQLWETTMNPETRIMLKVELEDAAAADETFTILMGDKVEPRREFIEKN 637 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 638 AKYVQNLDV 646 >gi|301066454|ref|YP_003788477.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang] gi|300438861|gb|ADK18627.1| DNA topoisomerase IV subunit B [Lactobacillus casei str. Zhang] Length = 670 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 369/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ + +E FIN G D L G GT +TF P IF Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL ++ I+L D+R+ + + Y G+ +FV YL+ K Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K+ +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D LS +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FD+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIEAGRIYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + RI + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIEAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 N Sbjct: 632 N 632 >gi|32448562|gb|AAO16798.1| ParE [Streptococcus pneumoniae] Length = 638 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 272/614 (44%), Positives = 386/614 (62%), Gaps = 18/614 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ D I VT+ Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 59 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 60 NKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186 N SSWL++ I R+G IY+ F N G L G+A TGT+VTF+P + IFS D Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTD 178 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+T+ RL E +FL +V +SL DKR+ E + Y+ G++ FVSYL+ K+ L Sbjct: 179 FKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLNEDKETLTPV 236 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y K Sbjct: 237 L-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARK 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364 + K+ +++ G D REG +VLSI +P+ +F QTK+KL S R VV+ V D L Sbjct: 296 TGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422 + +L E+ A +++K + A R+AAR+ARD +R +K D L GKL ++P Sbjct: 356 TFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNP 415 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++EI T+I +G Sbjct: 416 AKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIG 475 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPLY Sbjct: 476 AGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLY 534 Query: 543 GIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK-- 596 ++ + + + Y + LE+ ++ + + + ++ + Sbjct: 535 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTL 594 Query: 597 IDKLIKDFYPNHDK 610 I I+D + Sbjct: 595 IRVTIEDLARAERR 608 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + + S + ++ ++ Sbjct: 370 IRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAG 429 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N + ++ ++ + I + N Sbjct: 430 GSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANY 489 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 D ++ + F + + + + + + G K ++ Sbjct: 490 DKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 549 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ Sbjct: 550 WTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRV 609 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I++N Sbjct: 610 NVLMGDKVEPRRKWIEDN 627 >gi|170780469|ref|YP_001708801.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus] gi|169155037|emb|CAQ00133.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. sepedonicus] Length = 664 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 262/591 (44%), Positives = 378/591 (63%), Gaps = 11/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++ Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH++ E++DN++DE+L G+A Sbjct: 14 TRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVSEIVDNSVDEALAGFA 72 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I +T+ DG V D+GRGIP D+H EGIS E+++T+LHAGGKF Y VSGGLH Sbjct: 73 SDIQITMRKDGGIRVVDDGRGIPVDIHPVEGISTVELVLTKLHAGGKFGGGGYAVSGGLH 132 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L + ++R+G ++ SF G+ D PL G +TGT +TF PS +I Sbjct: 133 GVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDAPLEK-GEGSTETGTTITFWPSREI 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---EPREITMFYKGGIEAFVSY--L 236 F +F+YDTL+ R ++++FLN + ++L D+R E R Y+ G+ +V + Sbjct: 192 FETVEFDYDTLRARFQQMAFLNKGLALTLHDEREEDGAEHRTEKFLYERGLVDYVEHLVK 251 Query: 237 DRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 + + + I + IS+++AM+W Y E+V + N I +GGTH G R+ Sbjct: 252 AKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRA 311 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALT + Y ++ ++ ++ GDD REG T+V+S+K+ +P+F QTK KL ++E ++ Sbjct: 312 ALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKA 371 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V L WLE++P +AK I++K + AS R AAR+AR+ TRRKG+L+ +PGKL Sbjct: 372 YVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKL 431 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 DC +DP SE+FLVEGDSAGGSA QGR+ QAILPLRGKILNVE+AR D+ L + E+ Sbjct: 432 KDCQSKDPAFSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEV 491 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 ++ITA G GIG+D F+ K+RYHKI++M DADVDG HI TLLLT FR M LI G++ Sbjct: 492 QSMITAFGAGIGED-FNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYV 550 Query: 535 YIIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 Y+ +PPLY + + QYV + + LI+ + + + Sbjct: 551 YLAQPPLYRLKWSNAEDQYVYTDAERDALLIHGQQNGKKLPKDNGIQRYKG 601 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P TR+L++V + DA+ AD++FS LMG++VE RR FIQ N Sbjct: 596 IQRYKGLGEMDYKELWETTMDPATRTLMQVTLDDAAGADEVFSTLMGEDVESRRSFIQRN 655 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 656 AKDVRFLDI 664 >gi|314936492|ref|ZP_07843839.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp. hominis C80] gi|313655111|gb|EFS18856.1| DNA topoisomerase IV, B subunit [Staphylococcus hominis subsp. hominis C80] Length = 662 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 259/593 (43%), Positives = 366/593 (61%), Gaps = 16/593 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DN++DE L GY + I V Sbjct: 2 TNHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEIVDNSVDEVLNGYGNEIDV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+N D S +V DNGRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG S Sbjct: 61 TINEDNSISVEDNGRGMPTGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGAS 119 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-V 184 VVNALS WL++ I R+G IY+ SF + GI + L+ G P S IF Sbjct: 120 VVNALSEWLEVEIHRDGQIYKQSFKDGGIPTSGLMKAGKTKKTGTKVTF-KPDSSIFKAT 178 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 FN+DTL RL+E +FL +++I+L D R + RE Y+ GI+ FVSY++ K+ L Sbjct: 179 TSFNFDTLSERLQESAFLLKNLKITLKDLRDGKEREDVYHYEEGIKEFVSYINEGKEVLH 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 G+ + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 239 -DVTTFTGAANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYA 297 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 + K +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V++ Sbjct: 298 RRINELKDKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSE 357 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSER 420 L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL + Sbjct: 358 KLPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSK 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+A+ + + ++EI T+I Sbjct: 418 NTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIHT 477 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G D F + Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I PP Sbjct: 478 IGAGVGND-FKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 536 Query: 541 LYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + + K ++Y ++ LE I G ++ L Sbjct: 537 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-ILQRYKGLGEMNPEQLWE 588 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 9/275 (3%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 + K + + + + + + ++ ++ L SKN Sbjct: 360 PYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN- 418 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLN 643 ++ ++ + QA++ V N E + ++ ++ ++ Sbjct: 419 --TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKAKLEDIFKNEEINTIIH 476 Query: 644 FIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLT 703 I + +N + ++ + F F + + R+ Sbjct: 477 TIGAGVGNDFKLEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMRPLVQAGRVFIALPP 536 Query: 704 ILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTR 760 + L K++ L+ + KG +QRYKGLGEMN QLWETT+NP+TR Sbjct: 537 LYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGFILQRYKGLGEMNPEQLWETTMNPETR 596 Query: 761 SLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +L+RV+I D ++ + LMGD+V PRRE+I+ + Sbjct: 597 TLIRVQIDDEVRSSKRVTTLMGDKVAPRREWIENH 631 >gi|297200945|ref|ZP_06918342.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] gi|297147775|gb|EDY60918.2| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083] Length = 690 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 287/650 (44%), Positives = 400/650 (61%), Gaps = 24/650 (3%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S+ +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+A Sbjct: 29 SNGEVTASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHA 87 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 88 DTIDVTILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 147 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS+ + + IK +G + + G+ PL A ++ GT VTF DI Sbjct: 148 GVGVSVVNALSTKVSVEIKTDGYRWTQDYKLGVPTAPLAQ-HEATDEHGTTVTFWADPDI 206 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFY 225 F +++++TL R +E++FLN ++I+L D+R E + ++ Y Sbjct: 207 FETTEYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKHEVKTVSYHY 266 Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQ 282 +GGI FV Y R + + + I ++ + +S++LAM+WN GY E V F N I Sbjct: 267 EGGIVDFVKYLNSRKGEVVHPTVIDLEAEDKDKSLSLELAMQWNGGYSEGVYSFANIIHT 326 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F Q Sbjct: 327 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQ 386 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++EV++ V+ V + L+ WL+ +P+EA I++K + A+ R AAR+ARDLTRRK Sbjct: 387 TKTKLGNTEVKTFVQKVVYEHLTDWLDRNPVEAADIIRKSIQAATARVAARKARDLTRRK 446 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 G+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+ Sbjct: 447 GLLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEK 506 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F Sbjct: 507 ARIDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHISTLLLTFLF 565 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M L+ G +Y+ +PPLY I G+ + D LI + DS Sbjct: 566 RFMRPLVEAGHVYLSRPPLYKIKWGRDDIEYAYSDRERDALIEMGRQRGKRIREDSIQRF 625 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + ++ T + A +F+ +++ Sbjct: 626 KG--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 673 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR +G S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 604 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 663 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR+FIQ N+ LDI Sbjct: 664 SVLMGEDVEARRQFIQRNAKDVRFLDI 690 >gi|323357952|ref|YP_004224348.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] gi|323274323|dbj|BAJ74468.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Microbacterium testaceum StLB037] Length = 677 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 275/633 (43%), Positives = 390/633 (61%), Gaps = 23/633 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y AD+IQ+L+GL+AV+KRP MYIG T GE GLHH++ E++DN++DE+L GY D I VT Sbjct: 22 NEYGADAIQVLEGLEAVRKRPGMYIGST-GERGLHHLVQEIVDNSVDEALAGYCDTIDVT 80 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG+ V DNGRGIP D+H+ EG S EV++T LHAGGKF Y VSGGLHGVG SV Sbjct: 81 ILSDGAVRVVDNGRGIPVDMHRTEGKSTVEVVLTVLHAGGKFGGGGYAVSGGLHGVGSSV 140 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS+ L++ +KR+G+++ SF + G PL G + TGT +TF P + IF D Sbjct: 141 VNALSTRLEVEVKRQGHVWRQSFRDGGQPLAPLEK-GEESDQTGTTITFWPDATIFDTID 199 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSP-------------EPREITMFYKGGIEAFV 233 F+YDTL+ R ++++FLN ++ISL D+R E R + Y+ G+ +V Sbjct: 200 FDYDTLRTRFQQMAFLNKGLRISLRDERPQSVVVEGEPGEEVTEARNDSFLYERGLVDYV 259 Query: 234 SYLDRHKKPLMQSPIRIQGS----RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 +L+R +K + + I+ +I+++LAM+W Y ENV + N I +GGTH Sbjct: 260 EHLNRVRKADVVNDEIIEVESEDTDRHIALELAMQWTTAYTENVFTYANTINTHEGGTHE 319 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G R+ALT + Y + K+ ++ GDD REG T+V+S+K+ +P+F QTK KL + Sbjct: 320 EGFRAALTTLVNRYARANNLLKEKDDNLTGDDIREGLTAVISVKLSEPQFEGQTKTKLGN 379 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 +E R+ V+ V D L W + +P +AK I++K +DA+ R AAR+AR+ RRK V + A+ Sbjct: 380 TEARAFVQKVVGDKLGDWFDRNPGQAKNIIRKAIDAATARLAARKARETARRKSVFESAA 439 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 +P KL DC+ +DP SE+FLVEGDSAGGSA QGR QAIL LRGKILNVERAR D+ L Sbjct: 440 MPDKLKDCTSKDPSISEIFLVEGDSAGGSAVQGRDPHTQAILALRGKILNVERARLDRAL 499 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++E+ +I A GTGIG+D FD+ K RYHKI++M DADVDG HI TLLLT FR M LI Sbjct: 500 GNKEVQAMIQAFGTGIGED-FDMAKARYHKIVLMADADVDGQHITTLLLTLLFRYMRGLI 558 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 GF+Y+ +PPLY + + D ++ + + D+ I + Sbjct: 559 EAGFVYLAQPPLYRLKWSNHPHEYAYSDRERDAMLVDGQAAGRRIPKDNG--IQRYKGLG 616 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 ++D + + + I+ A + Sbjct: 617 EMNDHELWETTMDPETRTLKQVTIDDAAAADEI 649 Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LWETT++P+TR+L +V I DA+ AD++FS LMG++VE RR FIQ N Sbjct: 609 IQRYKGLGEMNDHELWETTMDPETRTLKQVTIDDAAAADEIFSVLMGEDVESRRSFIQRN 668 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 669 AKDVRFLDI 677 >gi|256786618|ref|ZP_05525049.1| DNA gyrase subunit B [Streptomyces lividans TK24] gi|289770511|ref|ZP_06529889.1| DNA gyrase, B subunit [Streptomyces lividans TK24] gi|289700710|gb|EFD68139.1| DNA gyrase, B subunit [Streptomyces lividans TK24] Length = 694 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I Sbjct: 37 ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 95 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGV Sbjct: 96 VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 155 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ + + +K +G + + G+ L A +TGT VTF DIF Sbjct: 156 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 214 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229 D++++TL R +E++FLN ++I+L D+R E + ++ Y+GGI Sbjct: 215 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 274 Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV+Y R + + + I ++ + +S+++AM+WN GY E V F N I +GG Sbjct: 275 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 334 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F QTK K Sbjct: 335 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 394 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L ++EV++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 395 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 454 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D Sbjct: 455 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 514 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L +QEI +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 515 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 573 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 L+ +G +Y+ +PPLY I G+ + D LI + DS Sbjct: 574 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 631 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 632 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 680 Score = 140 bits (354), Expect = 8e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 608 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 667 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 668 SVLMGEDVEARRAFIQRNAKDVRFLDI 694 >gi|7437457|pir||T10969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B - Streptomyces coelicolor gi|436027|gb|AAA65215.1| DNA gyrase [Streptomyces coelicolor A3(2)] gi|1093584|prf||2104262D DNA gyrase Length = 686 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I Sbjct: 29 ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 87 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGV Sbjct: 88 VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 147 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ + + +K +G + + G+ L A +TGT VTF DIF Sbjct: 148 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 206 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229 D++++TL R +E++FLN ++I+L D+R E + ++ Y+GGI Sbjct: 207 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 266 Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV+Y R + + + I ++ + +S+++AM+WN GY E V F N I +GG Sbjct: 267 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 326 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F QTK K Sbjct: 327 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 386 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L ++EV++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 387 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 446 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 506 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L +QEI +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 507 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 L+ +G +Y+ +PPLY I G+ + D LI + DS Sbjct: 566 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 623 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 624 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 600 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686 >gi|191638405|ref|YP_001987571.1| DNA topoisomerase IV subunit B [Lactobacillus casei BL23] gi|190712707|emb|CAQ66713.1| Topoisomerase IV, subunit B [Lactobacillus casei BL23] gi|327382434|gb|AEA53910.1| DNA topoisomerase IV subunit B [Lactobacillus casei LC2W] gi|327385633|gb|AEA57107.1| DNA topoisomerase IV subunit B [Lactobacillus casei BD-II] Length = 670 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ +E FIN G D L G GT +TF P IF Sbjct: 120 GSSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGSLQKLGKVNEPNGTTITFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL ++ I+L D+R+ + + Y G+ +FV YL+ K Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K+ +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D LS +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FD+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDLQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + RI + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 N Sbjct: 632 N 632 >gi|313765016|gb|EFS36380.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1] gi|313815427|gb|EFS53141.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1] gi|313828992|gb|EFS66706.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2] gi|314916223|gb|EFS80054.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4] gi|314917490|gb|EFS81321.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1] gi|314921826|gb|EFS85657.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3] gi|314930909|gb|EFS94740.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1] gi|314955295|gb|EFS99700.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1] gi|314959168|gb|EFT03270.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1] gi|314969073|gb|EFT13171.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1] gi|315099333|gb|EFT71309.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2] gi|315102327|gb|EFT74303.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1] gi|315109856|gb|EFT81832.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2] gi|327454261|gb|EGF00916.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA3] gi|328756019|gb|EGF69635.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1] gi|328758863|gb|EGF72479.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2] Length = 685 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 270/578 (46%), Positives = 364/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 37 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 96 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 156 NALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSDEIFDAIV 215 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S P++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 456 SSTSPEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|6939900|dbj|BAA90679.1| DNA gyrase subunit B [Porphyromonas asaccharolytica] Length = 553 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 268/547 (48%), Positives = 357/547 (65%), Gaps = 10/547 (1%) Query: 33 GDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEG 92 GD E GLHH++YEV+DN+IDE+L GY + V + D S V+DNGRGIP D+H +EG Sbjct: 1 GDIS-EKGLHHLVYEVVDNSIDEALAGYCTEVLVEILSDNSIQVTDNGRGIPVDMHAKEG 59 Query: 93 ISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN 152 SA EV+MT LHAGGKF++ SYKVSGGLHGVGVS VNALS L + R+G IY + Sbjct: 60 KSALEVVMTVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQEYSR 119 Query: 153 GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID 212 G + V G A +DTGT +TF P IF ++ +TL HRLRELS+LN+ + + LID Sbjct: 120 GKPLTGVEVVGKA-DDTGTRITFKPDDTIFRETIYSSETLSHRLRELSYLNAGLHLKLID 178 Query: 213 KRSPE----PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 R + P+ + + G+ FV Y+D K+ L+ I + + +++A+ +N Sbjct: 179 HRVHDEEGQPKSWIFYSENGLSEFVRYVDGAKESLIHDVIHHTTEKQGVPVEVALTYNTS 238 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y ENV + N+I +GGTHL+G R LTR + Y S K K + GDD REG T+ Sbjct: 239 YQENVYTYVNDIHTIEGGTHLTGFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTA 298 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 ++S+K+ +P+F QTK KL +SE+ VV++ V++ L +LEEHP EAK+IV KV+ A+ Sbjct: 299 IVSVKVAEPQFEGQTKTKLGNSEIVGVVDAAVSEALEIYLEEHPTEAKLIVDKVILAAQA 358 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AARRAR+L +RK L LPGKLADCS +DP + ELF+VEGDSAGG+AKQGR + Q Sbjct: 359 RHAARRARELVQRKSPLTGGGLPGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQ 418 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDI----NKLRYHKIIIMT 504 AILPLRGKILNVE+A ++L + EI + TALG +G + +KLRYHKIIIMT Sbjct: 419 AILPLRGKILNVEKAMQHRILDNAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMT 478 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHI TL+LTFFFR M LI NG++YI PPLY + + +Y +E D++ Sbjct: 479 DADVDGAHIATLILTFFFRNMRPLIENGYVYIANPPLYLCKKDRIEEYCWTDEQKSDFVT 538 Query: 565 NQSLSEE 571 +E Sbjct: 539 KYGNGQE 545 >gi|148271184|ref|YP_001220745.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829114|emb|CAN00011.1| DNA gyrase subunit B [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 681 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 260/585 (44%), Positives = 378/585 (64%), Gaps = 10/585 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++ Y A+ IQ+L+GL+AV+KRP MYIG T G GLHH++ E++DN++DE+L G+A Sbjct: 31 TRQQVSNDYGANEIQVLEGLEAVRKRPGMYIGST-GPRGLHHLVSEIVDNSVDEALAGFA 89 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I +T+ DG V D+GRGIP D+H EGIS E+++T+LHAGGKF Y VSGGLH Sbjct: 90 SDIQITMRKDGGIRVVDDGRGIPVDIHPVEGISTVELVLTKLHAGGKFGGGGYAVSGGLH 149 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L + ++R+G ++ SF G+ D PL G +TGT +TF PS +I Sbjct: 150 GVGSSVVNALSERLDVEVRRQGAVWRQSFTIGVPDEPLQK-GEGSTETGTTITFWPSREI 208 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---EPREITMFYKGGIEAFVSY--L 236 F +F+YDTL+ R ++++FLN + ++L D+R E R Y+ G+ +V + Sbjct: 209 FETVEFDYDTLRARFQQMAFLNKGLALTLHDEREVDGAEHRTEKFLYERGLVDYVEHLVK 268 Query: 237 DRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 + + + I + IS+++AM+W Y E+V + N I +GGTH G R+ Sbjct: 269 AKKTEVVNADVIAFESEDTVKKISLEVAMQWTTSYTESVHTYANTINTHEGGTHEEGFRA 328 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ALT + Y ++ ++ ++ GDD REG T+V+S+K+ +P+F QTK KL ++E ++ Sbjct: 329 ALTTLVNRYARENKLLREKDENLTGDDVREGLTAVISVKLGEPQFEGQTKTKLGNTEAKA 388 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V+ V L WLE++P +AK I++K + AS R AAR+AR+ TRRKG+L+ +PGKL Sbjct: 389 YVQRIVGQQLGDWLEKNPSQAKDIIRKGMQASQARLAARKAREQTRRKGLLESGGMPGKL 448 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 DC +DP SE+FLVEGDSAGGSA QGR+ QAILPLRGKILNVE+AR D+ L + E+ Sbjct: 449 KDCQSKDPALSEVFLVEGDSAGGSAVQGRNPTTQAILPLRGKILNVEKARLDRALQNNEV 508 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 ++ITA G GIG+D F+ K+RYHKI++M DADVDG HI TLLLT FR M LI G++ Sbjct: 509 QSMITAFGAGIGED-FNAEKVRYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIELGYV 567 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 Y+ +PPLY + + ++ D L+ ++ ++ D+ Sbjct: 568 YLAQPPLYRLKWSNAEHQYVYTDAERDALLVHGQAKGKKMPKDNG 612 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P TR+L++V + DA+ AD++FS LMG++VE RR FIQ N Sbjct: 613 IQRYKGLGEMDYKELWETTMDPATRTLMQVTLDDAAGADEVFSTLMGEDVESRRSFIQRN 672 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 673 AKDVRFLDI 681 >gi|227432902|ref|ZP_03914846.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351335|gb|EEJ41617.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 672 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 276/626 (44%), Positives = 396/626 (63%), Gaps = 12/626 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + + Y+AD IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+A Sbjct: 30 TVDAKAGDYNADQIQVLEGLEAVRKRPGMYIGTTTAQ-GLHHLVWEIVDNGIDEALAGFA 88 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 ITVT+ D S TV+D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLH Sbjct: 89 SHITVTIEKDNSITVTDDGRGIPVDIQTKTGKPALETVFTVLHAGGKFGGGGYKVSGGLH 148 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTG-SAGNDTGTEVTFLPSSD 180 GVG SVVNALS+ L +++ R+ +Y M F G + + + GT V F P +D Sbjct: 149 GVGASVVNALSTDLDVKVVRDNKVYYMDFKVGRVHTTMRTLDEEPTIERGTIVHFKPDTD 208 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF +NY TL R+REL+FLN ++IS+ DKR EP + + ++GGI+ +V YL+ Sbjct: 209 IFRETTTYNYKTLLTRVRELAFLNKGLRISIADKRLEEPIKESFNFEGGIKEYVQYLNED 268 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + P+ ++G + I ++ A+++ +++ F NNI +GGTH +G ++ALTR Sbjct: 269 KQVIFPEPVYVEGEENGIVVEAALQYTTDIKDSLRTFANNINTYEGGTHETGFKTALTRV 328 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 I Y KS K S+ G+D REG T+++SIK PDP+F QTK KL +S+ R + Sbjct: 329 INDYARKSGQIKDGAESLTGEDVREGMTAIVSIKHPDPQFEGQTKTKLGNSDARQATDRM 388 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ S ++ E+P A+ IV+K + A R AA+RAR++TR++ L+I +LPGKLAD + Sbjct: 389 FSETFSRFMMENPNVARQIVEKGVLAQKARLAAKRAREMTRKQSGLEIGNLPGKLADNTS 448 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 DP SELF+VEGDSAGGSAKQGR+R QAILP+RGKILNV +A +++L+++EI +L T Sbjct: 449 NDPAISELFIVEGDSAGGSAKQGRNRVTQAILPIRGKILNVGKASLERVLANEEIRSLFT 508 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+GTG G D F++ K YHK+IIMTDADVDGAHIRTLLLT F+R M L+ G++YI +P Sbjct: 509 AMGTGFG-DDFNVEKANYHKVIIMTDADVDGAHIRTLLLTLFYRYMRPLVDAGYIYIAQP 567 Query: 540 PLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALK 596 PLYG+ KS+ Y+ +E LE YL + + G + + L + DA Sbjct: 568 PLYGVALGNNKSMTYLDSDEELESYLSQLPSNVKPKVQRYKGLGEMDYDQLADTTMDAQN 627 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVF 622 + E + + Sbjct: 628 -----RRLLRVDPADAEEAEAVIDML 648 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QL +TT++ R LLRV DA +A+ + LMG +V PRR+FI++N Sbjct: 604 VQRYKGLGEMDYDQLADTTMDAQNRRLLRVDPADAEEAEAVIDMLMGGDVPPRRKFIEDN 663 Query: 796 SLPS-ALDI 803 ++ LDI Sbjct: 664 AVFVENLDI 672 >gi|32448552|gb|AAO16803.1| ParE [Streptococcus pneumoniae] Length = 638 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 272/614 (44%), Positives = 386/614 (62%), Gaps = 18/614 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y+ D+IQ+L+GLDAV+KRP MYIG TD +GLHH+++E++DNA+DE+L G+ D I VT+ Sbjct: 1 NYNDDAIQVLEGLDAVRKRPGMYIGSTD-GAGLHHLVWEIVDNAVDEALSGFGDRIDVTI 59 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGLHGVG SVV Sbjct: 60 NKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVV 118 Query: 129 NALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQD 186 N SSWL++ I R+G IY+ F N G L G+A TGT+VTF+P + IFS D Sbjct: 119 NLSSSWLEVEITRDGAIYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMPDAGIFSTTD 178 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F Y+T+ RL E +FL +V +SL DKR+ E + Y+ G++ FVSYL+ K+ L Sbjct: 179 FKYNTISERLNESAFLLKNVTLSLTDKRTDES--VEFHYENGVQDFVSYLNEDKETLTPV 236 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T+ + Y K Sbjct: 237 L-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAITKVMNDYARK 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364 + K+ +++ G D REG +VLSI +P+ +F QTK+KL S R VV+ V D L Sbjct: 296 TGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPVVDGIVADKL 355 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDP 422 + +L E+ A +++K + A R+AAR+ARD +R +K D L GKL ++P Sbjct: 356 TFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGKLTPAQSKNP 415 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++EI T+I +G Sbjct: 416 AKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIG 475 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G +YI PPLY Sbjct: 476 AGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEVGHVYIALPPLY 534 Query: 543 GIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK-- 596 ++ + + + Y + LE+ ++ + + + ++ + Sbjct: 535 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTL 594 Query: 597 IDKLIKDFYPNHDK 610 I I+D + Sbjct: 595 IRVTIEDLARAERR 608 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 41/73 (56%), Positives = 58/73 (79%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG ++QRYKGLGEMNA QLWETT+NP+TR+L+RV I D ++A+ + LMG Sbjct: 555 LEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMG 614 Query: 783 DEVEPRREFIQEN 795 D+VEPRR++I++N Sbjct: 615 DKVEPRRKWIEDN 627 >gi|88854504|ref|ZP_01129171.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1] gi|88816312|gb|EAR26167.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1] Length = 664 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 266/579 (45%), Positives = 377/579 (65%), Gaps = 7/579 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + SY AD IQIL+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY D I Sbjct: 20 VAADSYGADQIQILEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYCDTI 78 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + DGS V DNGRGIP DL+++E S EV+MT LHAGGKF Y VSGGLHGVG Sbjct: 79 NVWIRKDGSVRVRDNGRGIPVDLNQQEQKSTVEVVMTMLHAGGKFGGGGYAVSGGLHGVG 138 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 +SVVNALS+ + ++R+G+++ MSF NG+ PL G + +TGT+ TF PS + F Sbjct: 139 ISVVNALSAEIDTEVRRQGHVWRMSFANGVPVGPLEQ-GESTTETGTQQTFWPSKETFET 197 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDRHKKP 242 +F+++TL+ R ++++FLN ++I++ D+R E + Y+ G+ +V Y + + Sbjct: 198 VEFDFETLRARFQQMAFLNKGLRITITDERDEEDVVESYMYERGLVDYVEYLNKAKKNEL 257 Query: 243 LMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I + IS+++AM+W GY E+V + N I +GGTH G R+ALT + Sbjct: 258 IHPDVIAFESEDTEKRISLEVAMQWTAGYTESVHTYANTINTHEGGTHEEGFRAALTSLV 317 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ ++ GDD REG T+V+SIK+ +P+F QTK KL ++E ++ V+ Sbjct: 318 NRYAREKNIIKEKDENLSGDDVREGLTAVISIKLGEPQFEGQTKTKLGNTEAKAFVQRIA 377 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 L W + +P +A+ +++K + AS R AAR+AR+ TRRKG+L+ + +PGKL DCS + Sbjct: 378 GQQLGDWFDRNPTQARDVIRKAIQASQARLAARKAREQTRRKGLLESSGMPGKLRDCSSK 437 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 DP SE+F+VEGDSAGGSA QGR+ E QAILPLRGKILNVE+AR D+ L + E+ +ITA Sbjct: 438 DPSLSEIFIVEGDSAGGSAVQGRNPEFQAILPLRGKILNVEKARLDRALGNAEVQAMITA 497 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 G G+G+D FD K RYHKI++M DADVDG HI TLLLT FR M LI G++Y+ +PP Sbjct: 498 FGAGVGED-FDPEKARYHKIVLMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPP 556 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 LY + + ++ D L LS + D+ Sbjct: 557 LYRLKWSNAQHEYVYSDTERDALTEAGLSAGKRMPKDNG 595 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ +LWETT++P R+LL+V + DA+ AD++FS LMG++VE RR FIQ N Sbjct: 596 IQRYKGLGEMDYKELWETTMDPADRTLLQVTLDDAAAADEIFSTLMGEDVESRRNFIQRN 655 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 656 AKDVRFLDI 664 >gi|227535108|ref|ZP_03965157.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187249|gb|EEI67316.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 670 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ +E FIN G D L G GT +TF P IF Sbjct: 120 GSSVVNALSESLTVRVVRDKRAFEEHFINGGHPDGTLQKLGKVNEPNGTTITFKPDPTIF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+YDTL RLRE +FL ++ I+L D+R+ + + Y G+ +FV YL+ K Sbjct: 180 QTTVFSYDTLAERLRESAFLLKNITINLTDERTGK--HDSYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENLISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K+ +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLKERDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D LS +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDKLSTFLMENGEESQELVRKAVKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FD+ + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDMQQANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRIYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + RI + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIDAGRIYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 N Sbjct: 632 N 632 >gi|21222282|ref|NP_628061.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)] gi|544466|sp|P35886|GYRB_STRCO RecName: Full=DNA gyrase subunit B gi|8247656|emb|CAB92994.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)] Length = 686 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 284/649 (43%), Positives = 400/649 (61%), Gaps = 24/649 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I Sbjct: 29 ASASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTID 87 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGV Sbjct: 88 VTILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGV 147 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 SVVNALS+ + + +K +G + + G+ L A +TGT VTF DIF Sbjct: 148 SVVNALSTRVAVEVKTDGYRWTQEYKLGVPTASLAR-HEATEETGTTVTFWADGDIFETT 206 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGI 229 D++++TL R +E++FLN ++I+L D+R E + ++ Y+GGI Sbjct: 207 DYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYEGGI 266 Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV+Y R + + + I ++ + +S+++AM+WN GY E V F N I +GG Sbjct: 267 VDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQWNGGYTEGVYSFANIIHTHEGG 326 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F QTK K Sbjct: 327 THEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTK 386 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L ++EV++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 387 LGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRKGLLE 446 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 506 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L +QEI +I+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 507 RILQNQEIQAMISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 L+ +G +Y+ +PPLY I G+ + D LI + DS Sbjct: 566 PLVESGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFKG-- 623 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 624 LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 600 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686 >gi|199599527|ref|ZP_03212915.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001] gi|229552216|ref|ZP_04440941.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258508414|ref|YP_003171165.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG] gi|258539627|ref|YP_003174126.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus Lc 705] gi|199589568|gb|EDY97686.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus HN001] gi|229314402|gb|EEN80375.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257148341|emb|CAR87314.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus GG] gi|257151303|emb|CAR90275.1| DNA topoisomerase IV, B subunit [Lactobacillus rhamnosus Lc 705] gi|259649728|dbj|BAI41890.1| DNA topoisomerase IV subunit B [Lactobacillus rhamnosus GG] Length = 670 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 266/598 (44%), Positives = 368/598 (61%), Gaps = 15/598 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y+ SIQ+L GL+AV+KRP MYIG TD GLHH++YE++DN++DE+L G+ D Sbjct: 2 DKATQAYNDSSIQVLHGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNSVDEALAGFGDE 60 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D+GRG+PT +H G EVI+T LHAGGKFNQ SYK SGGLHGV Sbjct: 61 INVTIHADNSVTVQDHGRGMPTGMHPS-GKPTIEVILTVLHAGGKFNQNSYKTSGGLHGV 119 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS L +R+ R+ + +E FIN G D L G GT +TF P +F Sbjct: 120 GSSVVNALSESLTVRVVRDKHAFEEHFINGGHPDGGLQKLGKVNEPNGTTITFKPDPTVF 179 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FNYDTL RLRE +FL ++ I+L D+R+ + Y G+ +FV YL+ K Sbjct: 180 QTTVFNYDTLAERLRESAFLLKAITINLTDERTGK--HDQYHYPDGLVSFVKYLNEGKDA 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + I +G +D I +D A ++NDGY EN++ F NN+ DGGTH GLRS +TR Sbjct: 238 -LSQVINFEGKKDGIVVDFAGQYNDGYSENIISFVNNVRTGDGGTHEIGLRSGMTRAFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 + K K +++ G D REGF +LS+++P+ +F QTK KL + + R+VV+ V Sbjct: 297 FARKVGLLKDRDKNLEGSDVREGFAGILSVRIPEEILQFEGQTKGKLGTPQARTVVDGIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 D L+ +L E+ E++ +V+K + A R+AAR+ARD T RK D L GKL Sbjct: 357 YDHLATFLMENGEESQELVRKAIKARDAREAARKARDDSRTGRKRKKDQGLLSGKLTPAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++PK++EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ ++ ++EI T+I Sbjct: 417 TKNPKRNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIVKNEEINTMI 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D FDI + Y+KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 YTIGAGVGAD-FDIQQANYNKIIIMTDADTDGAHIQILLLTFFYRYMRPLIDAGRVYIAL 535 Query: 539 PPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + + + Y +E L + F + + ++ Sbjct: 536 PPLYRLQKGAGAKTKISYAWTDEELAKETKAMGKGYTLTRFKGLGEMNADQLWETTMN 593 Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKR--IFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R I + R+ + L G K KI+ L ++G KG Sbjct: 513 LLLTFFYRYMRPLIDAGRVYIALPPLYRLQKGAGAKTKISYAWTDEELAKETKAMG-KGY 571 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMGD VEPRRE+I+ Sbjct: 572 TLTRFKGLGEMNADQLWETTMNPETRTLIRVRIDDAQLAERRVTTLMGDRVEPRREWIEH 631 Query: 795 N 795 + Sbjct: 632 H 632 >gi|329571648|gb|EGG53329.1| DNA topoisomerase 4 subunit B [Enterococcus faecalis TX1467] Length = 542 Score = 545 bits (1405), Expect = e-152, Method: Composition-based stats. Identities = 256/539 (47%), Positives = 351/539 (65%), Gaps = 10/539 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ I N+ Y+ SIQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAKKI-NNEYNDASIQVLEGLEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+ D S V+D+GRG+PT +H GI EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTIQKDNSICVADSGRGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+G Y F + G L G GT VTFLP Sbjct: 118 HGVGASVVNALSKWLEVHIVRDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDD 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +F+Y+ L RLRE +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ Sbjct: 178 TIFSTTNFSYEILAERLRESAFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEE 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + G+++ I ++LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Sbjct: 238 KDTLTP-VVYFSGAKEGIEVELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKA 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +VLSI++P+ +F QTK KL + R+VV+ Sbjct: 297 YNEYARKVGLLKEKDKNLEGSDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + + +L+E+ ++ +++K + A R+AAR+AR+ +K + L GKL Sbjct: 357 NVVGEQMGFYLQENSEMSQSLIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 417 PAQSRNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F I Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G Sbjct: 477 TMIYTIGAGVG-PEFSIEDCNYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEYGQS 534 >gi|224500820|ref|ZP_03669169.1| DNA topoisomerase IV subunit B [Listeria monocytogenes Finland 1988] Length = 647 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 260/650 (40%), Positives = 381/650 (58%), Gaps = 18/650 (2%) Query: 13 DSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDG 72 DSIQ+L+GL+AV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ I VTL+ DG Sbjct: 1 DSIQVLEGLEAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDETLAGFGKKIVVTLHEDG 59 Query: 73 SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGGLHGVGVSVVNAL 131 S +VSD GRG+P +H + G S EVI+T LHAGGKF Q+ YK SGGLHGVG SVVNAL Sbjct: 60 SVSVSDEGRGMPVGMH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGGLHGVGSSVVNAL 118 Query: 132 SSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYD 190 S WL + I R+G Y+ F + G D L G + TGT + F P IF FNY+ Sbjct: 119 SEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGKSK-ATGTTIRFKPDPAIFPTTSFNYE 177 Query: 191 TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRI 250 TL RLRE +FL + I LID+R ++ G++ FV Y++ K L Sbjct: 178 TLSERLRESAFLLKGMLIELIDERVG--MAEAFHFEEGVKNFVEYINEGKDVLHPVA-SF 234 Query: 251 QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGS 310 +G I +++A ++NDGY EN+L F NN+ + G+H SG+++A+TR Y + Sbjct: 235 EGENATIEVEMAFQFNDGYSENILSFVNNVRTRGAGSHESGMKAAMTRIFNDYARRVNLL 294 Query: 311 KKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 K+ +++ G D REG ++VLSI++P+ +F QTKEKL + E R V++ V + L+ +L Sbjct: 295 KEKDKNLEGSDIREGLSAVLSIRVPEKILQFEGQTKEKLGTQEARQAVDAVVAEHLAYFL 354 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERDPKKSE 426 E+P + ++VKK + A R+AAR+AR+ TR +K L GKL R+P K+E Sbjct: 355 AENPETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNE 414 Query: 427 LFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG 486 L+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI T+I +G G+G Sbjct: 415 LYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVG 474 Query: 487 QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT- 545 FD+ Y K++IMTDAD DGAHI+ LLLTFF+R M L+ G ++I PPLY ++ Sbjct: 475 -TEFDVEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSR 533 Query: 546 ---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID-DALKIDKLI 601 + + ++Y +E L+ + I+ + + + ++ D + ++ Sbjct: 534 GSGKKEVIEYAWTDEELDSAIQKIGKGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVR 593 Query: 602 KDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 D ++ + ++ N L E+ Sbjct: 594 VDDSARAERRVATLMGDKVEPRRQWIEKHVEFSMEDSQNILENENMMVEE 643 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 8/265 (3%) Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 + + + + ++ ++ S + ++ + Sbjct: 359 ETSSLLVKKAVKAREAREAARKAREETRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLV 418 Query: 598 DKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + QA++ V N E + ++ +++ ++ + + Sbjct: 419 EGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFD 478 Query: 655 GSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKI 714 N D +V + F + + + ++ + + K Sbjct: 479 VEDCNYDKVVIMTDADTDGAHIQVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKK 538 Query: 715 KI----TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ L I IG KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV++ D+ Sbjct: 539 EVIEYAWTDEELDSAIQKIG-KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDS 597 Query: 771 SQADDLFSRLMGDEVEPRREFIQEN 795 ++A+ + LMGD+VEPRR++I+++ Sbjct: 598 ARAERRVATLMGDKVEPRRQWIEKH 622 >gi|294155877|ref|YP_003560261.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145] gi|291599921|gb|ADE19417.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145] Length = 646 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 258/648 (39%), Positives = 391/648 (60%), Gaps = 18/648 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +N++Y+A +I+ L+GL+ V++RP MYIG T + GLHHMI+E++DN++DE++ G+A+II Sbjct: 3 KNNNYEASNIKFLEGLEHVRRRPGMYIG-TTSKDGLHHMIWEIVDNSVDEAMAGFANIIQ 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 +T+ D V DNGRGIP +H+ GISA EV++T+L+AGGKF +YKVSGGLHGVG Sbjct: 62 ITITDDDRIIVEDNGRGIPVGIHERFGISALEVVLTKLNAGGKFESNAYKVSGGLHGVGA 121 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFS 183 SVVNALS +K +KREG I+ F N G+ V G+ G+ +GT++ F P I Sbjct: 122 SVVNALSDSMKAWVKREGKIHFAEFANGGVTIKSTEVIGTYEGDSSGTKIEFHPDFTIME 181 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ + + ++++ LN + +S+ D R + + GI +V+ L+ P+ Sbjct: 182 KVPFDKELVVDHAKQIAHLNKGLFVSVKDLR--DNTYEEFKFDNGIIDYVNELNEGYTPI 239 Query: 244 MQSPIRIQGS--------RDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 Q I +G+ +I +++A ++ +D N++ + NNI +GGTH+SG Sbjct: 240 NQEVIFAEGTYLSVHNGNERSIGVEIAAQYLSDFPRSNIISYANNIATHEGGTHVSGFYD 299 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 ++ R + +Y ++ K + +D EG T+++S+K PDP+F QTK KL S + R Sbjct: 300 SVMRIVNNYAIENGIIKNEAEKFSREDLTEGLTAIISVKHPDPQFEGQTKGKLGSKDARM 359 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 V ++ L E+P+ +K I++ + A R AA ARD +RK D LPGKL Sbjct: 360 AVNKVFSEVFERLLNENPVLSKKIIENAVYARKGRLAANAARDNAKRKSAFDNGGLPGKL 419 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ADC+ ++ + SEL+LVEG+SAGGSAK GR R QAILPLRGK+LNVERAR D++++++EI Sbjct: 420 ADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLRGKVLNVERARQDRVVNNEEI 479 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 +L+TALGT +G D+F+INKLRYHKI+IMTDADVDGAHIRTLLLTFF+R LI GF+ Sbjct: 480 MSLVTALGTSLG-DTFNINKLRYHKIVIMTDADVDGAHIRTLLLTFFYRYFKPLIEYGFI 538 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRNFIDD 593 YI +PPLY I + K+++Y ++ ++ + + +++I G + L D Sbjct: 539 YIAQPPLYKIQQNKTVEYAYNDAQKDEIITKLNPTQKINIQRYKGLGEMDPEQLWETTMD 598 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 L + + ++ N E +E A + N Sbjct: 599 PKNRKMLQVQIEDAYKADWAFSTLMG--ENVEPRREFIEKNAKYVKNI 644 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 100/260 (38%), Gaps = 24/260 (9%) Query: 553 VKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD-----FYPN 607 +D + N L ++ +S+ L Sbjct: 400 ARDNAKRKSAFDNGGLPGKLADCASKNAEVSELYLVEGNSAGGSAKMGRDRNTQAILPLR 459 Query: 608 HDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH-GSINNSDILVKR 666 +E+A V N E + +L + L + N + K + ++ Sbjct: 460 GKVLNVERARQDRVVNNEEIMSLVTALGTSLGDTFNINKLRYHKIVIMTDADVDGAHIRT 519 Query: 667 IARGVQEQF---VLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLL 723 + ++ ++E I+ +I N+ E + I P Sbjct: 520 LLLTFFYRYFKPLIEYGFIYIAQPPLYKIQQNKTVEYAYNDA---QKDEIITKLNPTQ-- 574 Query: 724 DTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGD 783 I++QRYKGLGEM+ QLWETT++P R +L+V+I DA +AD FS LMG+ Sbjct: 575 ---------KINIQRYKGLGEMDPEQLWETTMDPKNRKMLQVQIEDAYKADWAFSTLMGE 625 Query: 784 EVEPRREFIQENSLPS-ALD 802 VEPRREFI++N+ +D Sbjct: 626 NVEPRREFIEKNAKYVKNID 645 >gi|326692694|ref|ZP_08229699.1| DNA topoisomerase IV subunit B [Leuconostoc argentinum KCTC 3773] Length = 693 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 261/680 (38%), Positives = 383/680 (56%), Gaps = 21/680 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGL Sbjct: 57 GNDIRVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L++ I R+G+ ++ F+N G + L G +GT V F P Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFVNGGHPVDTLRDLGPTTEHSGTTVKFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +FS + YDTL RLRE +FL S V+ +L D+R R T Y+ G+E+FV +L+ Sbjct: 176 SLFSATVYKYDTLSERLRESAFLMSGVKFTLTDERVQPARVETYHYEKGLESFVGFLNED 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + +G + I +++A ++NDGY E +L F NN+ +DGGTH G R+A T+ Sbjct: 236 -KATIGPVMTFEGEQSGIVVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K +++ G D REG +V+S+++P+ +F QTK+KL + E R +VE Sbjct: 295 FNEYARKVNLLKDKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGIVE 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415 S VN+ L +L E+ + +++K + A R+AAR+A T + L GKLA Sbjct: 355 SIVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKSKGQKERLLSGKLA 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D ++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI Sbjct: 415 PAQSKDATRNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEEIS 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI A+G G+G D F ++ + KIIIMTDAD DGAHI+TLLLTFF++ M LI G +Y Sbjct: 475 TLIYAIGGGVGND-FKVSDTAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533 Query: 536 IIKPPLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY + + + ++ + LE E+ F + + Sbjct: 534 IALPPLYRVKYASKKMADKFAWTNDELEAITSQSDARYELTRFKGLGE------MNAPLL 587 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + + + + L+ + Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIEANVHFTLDEAGSILDTV 647 Query: 653 WHGSINNSDILVKRIARGVQ 672 N SD+ K + Sbjct: 648 DGDPTNASDVFEKARQHENK 667 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 40/73 (54%), Positives = 53/73 (72%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ I S + R+KGLGEMNA LWETT+NP+TR+L+RVKI DA A+ + LMG Sbjct: 560 LEAITSQSDARYELTRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMG 619 Query: 783 DEVEPRREFIQEN 795 D+VEPRR++I+ N Sbjct: 620 DKVEPRRDWIEAN 632 >gi|328883698|emb|CCA56937.1| DNA gyrase subunit B [Streptomyces venezuelae ATCC 10712] Length = 676 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 285/664 (42%), Positives = 394/664 (59%), Gaps = 24/664 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N+ Y A +IQ+L+GLDAV+KRP MYIG T GE GLHHM+ EV+DN++DE+L G+AD Sbjct: 14 NPNENNQYTASNIQVLEGLDAVRKRPGMYIGST-GERGLHHMVQEVVDNSVDEALAGHAD 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG+ V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHG Sbjct: 73 TIDVTILADGAVRVVDNGRGIPVGIVASEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 132 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ + + IK +G+ + + G PL ++TGT VTF DIF Sbjct: 133 VGVSVVNALSTKVSVEIKTDGHRWTQDYKMGAPTAPLAQHEKT-DETGTSVTFWADPDIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------PEPREITMF 224 +++++TL R +E++FLN + I+L D+R P R + Sbjct: 192 ETTEYSFETLSRRFQEMAFLNKGLTITLTDERESAKATVGADDPDAEAAAEPAARTVKYH 251 Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281 Y+GGI FV Y R + + + I ++ + +S+++AM+WN GY E V F N I Sbjct: 252 YEGGIVDFVKYLNSRKGELVHPTVIDLEAEDKDKALSLEVAMQWNSGYSEGVYSFANIIH 311 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GGTH G R+ALT I Y ++ ++ GDD REG T+++S+K+ +P+F Sbjct: 312 THEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEG 371 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL ++EV++ V+ V + L+ WL+ +P+EA I++K + A+ R AAR+ARDLTRR Sbjct: 372 QTKTKLGNTEVKTFVQRAVYEHLNDWLDRNPVEAADIIRKSIQAATARVAARKARDLTRR 431 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE Sbjct: 432 KGLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 491 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF Sbjct: 492 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 550 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FR M L+ G +++ +PPLY I G+ + D L+ + DS Sbjct: 551 FRFMRPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQSGKRIKEDSIQR 610 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 N + + + QA D E S + A Sbjct: 611 FKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 670 Query: 642 LNFI 645 + F+ Sbjct: 671 VRFL 674 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 590 DALVELGKQSGKRIKEDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 649 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 650 SVLMGEDVEARRSFIQRNAKDVRFLDI 676 >gi|327456322|gb|EGF02977.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2] Length = 685 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 269/578 (46%), Positives = 363/578 (62%), Gaps = 13/578 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA I +L+GL+AV+KRP MYIG T GE GLHH +YE++DN++DE++ GY D I V L Sbjct: 37 SYDAGQITVLEGLEAVRKRPGMYIGST-GERGLHHCVYEIVDNSVDEAMAGYCDTIQVEL 95 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D C V+DNGRGIP H E I +++T+LHAGGKF YKVSGGLHGVG SVV Sbjct: 96 LDDNWCQVTDNGRGIPVKEHPVEHIPTVTLVLTKLHAGGKFGNGGYKVSGGLHGVGSSVV 155 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDIFSVQD 186 NAL++ + ++R+G + SF G D PL + + GT V F PS +IF Sbjct: 156 NALAAHFIVEVRRDGYHWLQSFSLGEPDGPLEQFEALGPDDHEGTTVRFQPSDEIFDAIV 215 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPE------PREITMFYKGGIEAFVSYLDRHK 240 F+Y TL +R RE++FLN ++I L D+R+ P YK G++ +V +L + Sbjct: 216 FDYQTLSNRFREMAFLNKGLRIVLTDRRADHADEDGNPVHEDFLYKEGLKDYVRFLTGTR 275 Query: 241 KPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + + I ++ R + +++AM+WN Y +V F N I +GG H G R+ALT Sbjct: 276 DVINPTIISLESHRPEEGMGLEIAMQWNTSYATSVHTFANAINTIEGGAHEEGFRAALTN 335 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + + E KK + V GDD REG T+V+SIK+ +P+F QTK KL ++E +S V+ Sbjct: 336 TVNRWGETWGLIKKREDRVSGDDIREGLTAVVSIKLTEPQFEGQTKTKLGNAEAKSFVQK 395 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPGKLADC 417 +N+ LS W EE+P E K IV+K A+ R AAR+ARD RKG+L SLPGKL DC Sbjct: 396 ALNEKLSDWFEENPNEGKSIVRKSQAAAQARVAARKARDLARNRKGLLGSTSLPGKLKDC 455 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S ++ E+F+VEGDSAGGSA QGR QAILPLRGKILNVE+AR D+ L S+ I ++ Sbjct: 456 SSTSSEECEIFIVEGDSAGGSASQGRDPRIQAILPLRGKILNVEKARLDRALGSETIESI 515 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I ALGTG+ +D FD++KLRYHKII+M DADVDGAHIRTLLLT FR M +I G +Y+ Sbjct: 516 INALGTGVHED-FDLDKLRYHKIILMADADVDGAHIRTLLLTLLFRFMRPVIDAGHVYLA 574 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 +PPL+ + S + + D L L+ +L Sbjct: 575 QPPLFRLRWTNSPHELAYSDEERDLLREDGLTHGKKLP 612 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A LW+TT++PD R LL+V + DA+ AD +FS LMG++VE RR FIQ N Sbjct: 617 IQRYKGLGEMDAEDLWDTTMDPDKRLLLQVTLEDAALADQMFSILMGEDVEQRRSFIQRN 676 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 677 AKDVRFLDI 685 >gi|239980782|ref|ZP_04703306.1| DNA gyrase subunit B [Streptomyces albus J1074] gi|291452640|ref|ZP_06592030.1| DNA topoisomerase subunit B [Streptomyces albus J1074] gi|291355589|gb|EFE82491.1| DNA topoisomerase subunit B [Streptomyces albus J1074] Length = 701 Score = 544 bits (1403), Expect = e-152, Method: Composition-based stats. Identities = 288/645 (44%), Positives = 393/645 (60%), Gaps = 26/645 (4%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SYDA +I +L+GLDAV+KRP MYIG T GE GLHHM+ EV+DN++DE+L G+AD I VT+ Sbjct: 45 SYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHMVQEVVDNSVDEALAGHADFIDVTI 103 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVSVV Sbjct: 104 LADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSVV 163 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALS+ + + I+ +G+ + S+ G+ PL G A +TGT VTF S IF D++ Sbjct: 164 NALSTRVAVEIRTDGHHWSQSYERGVPTAPLAQ-GEATEETGTSVTFWADSSIFETTDYS 222 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKR------------------SPEPREITMFYKGGIE 230 ++TL R +E++FLN + I L D+R EPR +T Y+GGI Sbjct: 223 FETLSRRFQEMAFLNKGLTIKLTDERASAKATAGADSDEATAGEPEEPRTVTYHYEGGIV 282 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV+Y R + + + I I+ + +S+++AM+WN GY E V F N I +GGT Sbjct: 283 DFVTYLNSRKGEVIHPTVIDIEAEDKDRLLSVEVAMQWNGGYSEGVYSFANTIHTHEGGT 342 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R ALT + Y + ++ GDD REG T+++S+K+ +P+F QTK KL Sbjct: 343 HEEGFRGALTTLVNKYARDRKLLRDKDDNLTGDDIREGLTAIISVKLGEPQFEGQTKTKL 402 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V + L+ W + +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 403 GNTEAKTFVQKVVYEHLADWFDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLET 462 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR QAILP+RGKILNVE+AR DK Sbjct: 463 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRDPMYQAILPIRGKILNVEKARIDK 522 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 523 ILHNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 581 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPLY I + + D LI + + DS L Sbjct: 582 LVEAGHVFLSRPPLYKIKWTRDDFQYAYSDRERDALIALGREQGKRIRDDSVQRFKG--L 639 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L+I + ++ T + A +F+ +++ Sbjct: 640 GEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 684 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++GR + S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 615 DALIALGREQGKRIRDDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 674 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR+FIQ N+ LDI Sbjct: 675 SVLMGEDVEARRQFIQRNAKDVRFLDI 701 >gi|296178610|dbj|BAJ07688.1| DNA gyrase B [Kosmotoga arenicorallina] Length = 538 Score = 544 bits (1402), Expect = e-152, Method: Composition-based stats. Identities = 260/530 (49%), Positives = 355/530 (66%), Gaps = 4/530 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 G++GLHH++YEV+DN+IDE + G+ D I VT+ DG+ V DNGRGIP D+H + G SA Sbjct: 2 GKAGLHHLVYEVVDNSIDEVVAGFCDQIEVTIFEDGTVRVMDNGRGIPVDVHPDTGTSAL 61 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 EV+MT LHAGGKF++ SYK+SGGLHGVGVSVVNALS WL++++ REG IY + GI Sbjct: 62 EVVMTTLHAGGKFSKDSYKISGGLHGVGVSVVNALSEWLEVKVHREGEIYRQRYERGIPV 121 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP 216 P+ + G + GTE F P +F+ DF++D L+ RLREL+FLN SV+I DKR Sbjct: 122 TPVEIIGKT-DKRGTETWFKPDKLVFTTTDFDFDILESRLRELAFLNPSVRIIFEDKRIN 180 Query: 217 EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 E R +GGI FV +++R K + + P I+G+ ++I + LA+++ + E++L F Sbjct: 181 EKRAFHF--EGGISEFVKFMNRKKTAINKEPYYIEGTFNDIKVQLALQYTTSFEEHILTF 238 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 NNI +GGTHL+G ++ LT+ I Y +K K+ ++ G+D REG T+VLSI + + Sbjct: 239 VNNIKTVEGGTHLTGFKTILTKLINDYAKKFNIIKEKDPNLQGEDVREGLTAVLSIFIKE 298 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL + E V + D L E + E K I+ K +DA+ R AA++AR Sbjct: 299 PQFEGQTKAKLGNEEGYEAVIKVLRDKLPEVFEYNQKEVKAIISKAVDAAKARLAAKKAR 358 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++ RRK L+ +LPGKLADC +D +ELF+VEGDSAGGSAKQ R RE QAILPLRGK Sbjct: 359 EMVRRKNALENTTLPGKLADCISQDLDNTELFIVEGDSAGGSAKQARDREFQAILPLRGK 418 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVE+A F+K+L +++I +I A+GTGIG D ++ KLRY KIIIMTDADVDGAHIRTL Sbjct: 419 ILNVEKASFEKLLKNEQINNIIVAVGTGIGDDL-NLEKLRYGKIIIMTDADVDGAHIRTL 477 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 +LT +R M LI G +YI + PLY + + Y +E LE + Sbjct: 478 ILTLLYRYMTPLISTGRVYIAQAPLYKVELNRKKYYFFSDEELEAFSKEN 527 >gi|296111945|ref|YP_003622327.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154] gi|295833477|gb|ADG41358.1| DNA topoisomerase IV subunit B [Leuconostoc kimchii IMSNU 11154] Length = 685 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 265/677 (39%), Positives = 381/677 (56%), Gaps = 21/677 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ + S TV D GRG+P LH E G EVI+T LHAGGKF Q Y SGGL Sbjct: 57 GNDIRVTIHSNNSITVQDFGRGMPVGLH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L++ I R+G+ ++ F N G L G +GT VTF P Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFTNGGQPVGTLRDLGVTKEKSGTTVTFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + YDTL RLRE +FL S V+ SL D+R R T Y+ G+EAFV +L+ Sbjct: 176 TIFSAVVYKYDTLSERLRESAFLMSGVKFSLTDERVKPARVETYHYEKGLEAFVGFLNED 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + + +G + I +D+A ++NDGY E +L F NN+ +DGGTH G R+A T+ Sbjct: 236 KGTIGP-VMTFEGEQSGIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +V+S+++P+ +F QTK+KL + E R +V+ Sbjct: 295 FNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKDKLGTPEARGIVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415 S VN+ L +L E+ + +++K + A R+AAR+A T + L GKLA Sbjct: 355 SVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKAKGQKERLLSGKLA 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI Sbjct: 415 PAQSKNAERNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLVDILKNEEIS 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI A+G G+G D F + ++KIIIMTDAD DGAHI+TLLLTFF++ M LI G +Y Sbjct: 475 TLIYAIGGGVGND-FKVADTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533 Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY + ++ + LE E+ F + + Sbjct: 534 IALPPLYRVKYASKKFDDKFAWTNDELETITSQNEARYELTRFKGLGE------MNAPLL 587 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + + + + L+ + Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGSILDTV 647 Query: 653 WHGSINNSDILVKRIAR 669 +SD+ K Sbjct: 648 DGDDTKSSDVFEKARQH 664 Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 4/119 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC----SLLDTIFSIGRKGISM 736 + +F KY R K L+TI S + Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYASKKFDDKFAWTNDELETITSQNEARYEL 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA LWETT+NP+TR+L+RVKI DA A+ + LMGD+VEPRRE+I+ N Sbjct: 574 TRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEAN 632 >gi|78707335|gb|ABB46474.1| DNA gyrase subunit B [Acholeplasma axanthum] gi|78707337|gb|ABB46475.1| DNA gyrase subunit B [Acholeplasma axanthum] gi|78707339|gb|ABB46476.1| DNA gyrase subunit B [Acholeplasma axanthum] Length = 589 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 259/570 (45%), Positives = 372/570 (65%), Gaps = 4/570 (0%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T G GLHH+++E++DN+IDE+L GYAD I + L V+DNGRGI Sbjct: 1 VRKRPGMYIG-TTGADGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D+H G A E I+T LHAGGKF+ SYKVSGGLHGVG SVVNALS W + + R Sbjct: 60 PVDIHPHTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 Y + GI L+ G + + TGT F IF ++++ L+ R+++L+FL Sbjct: 120 KNYYQMYNRGIPAGDLIEKGLSEH-TGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N ++I++ D R+ E T Y+GG+ + +L+ ++ + +S ++ D+I++++ Sbjct: 179 NRGIKITIKDLRTEAVVENTYHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDINVEIT 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M++ND +++N+ FTNNIP ++GG H G + ALTR + +Y + + K + IG+D Sbjct: 239 MQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTEDGFIGEDT 298 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG +LS+K PDP+F QTK KL ++EVR +V +++GL +L E+P +AK I+ KV Sbjct: 299 REGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQDAKAIIDKV 358 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + A R AAR+AR+ TRRK LD KLADC ++ +K+EL++VEGDSAGGSAKQG Sbjct: 359 ILAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDSAGGSAKQG 418 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAILPLRGK+LNVE+AR DK+LS+ EI L A+GTGIG + D +K RYHKI+I Sbjct: 419 RESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDEL-DPSKARYHKIVI 477 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTFF+R + LI G++Y +PPLY ++ GK ++YV D+E+L + Sbjct: 478 MTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEALPEI 537 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592 +++ + + + +D Sbjct: 538 AATFDGRYQMQRYKGLGEMNPEQLWETTMD 567 Score = 120 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + + + ++ + + + L+ + K + + D Sbjct: 427 LPLRGKVLNVEKARLDKILSNNEILMLFQAIGTGIGDELDPSKARYHKIVIMTDADVDGA 486 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSL 722 R + +F ++ R + + +G +I+ Sbjct: 487 HIRT-------------LLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEA 533 Query: 723 LDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L I + GR MQRYKGLGEMN QLWETT++P+TR+LLRV + DA AD +FS Sbjct: 534 LPEIAATFDGR--YQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAMDADQVFS 589 >gi|293400718|ref|ZP_06644863.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305744|gb|EFE46988.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 644 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 249/593 (41%), Positives = 360/593 (60%), Gaps = 11/593 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD SIQIL GLDAV+KRP MYIG TD GLHH+++E++DN+IDE+L G+ + I Sbjct: 1 MAEKTYDGSSIQILDGLDAVRKRPGMYIGSTD-GRGLHHLVWEIVDNSIDEALNGFGETI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123 +T+ DG V D GRG+P D+H G+ +VI T LHAGGKF+ Q YK SGGLHGV Sbjct: 60 KITIEKDGVICVEDEGRGMPVDMH-VSGVPTLQVIHTVLHAGGKFSSQGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNAL SW+++ + R+G IY+M F + G L V G N TG++ F+P IF Sbjct: 119 GASVVNALCSWMEVSVYRDGKIYQMRFEDGGKKIGKLEVIGKT-NKTGSKTRFMPDKKIF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S F++ + R +E +FL +++ + D+R + RE Y+ G+ AF+ YL K+ Sbjct: 178 STTRFSFSQIAERAQEDAFLLEGLRLVVRDEREGKEREEVYHYEEGLVAFMEYLHEDKQT 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + G + I +D A ++ D Y EN+ F N + KDGGTH +G R+A T+ Sbjct: 238 FHKPVA-FSGEVNGIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGARNAFTKVFND 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y ++ K+ +++ G D REG T +LS+ +P+ +F QTK KL + E ++ V+S V Sbjct: 297 YARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAKNAVDSIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCS 418 ++ L+ +LEE+ A ++KK+ AS R+AAR+AR+ R+ + GKLA Sbjct: 357 SEKLNFFLEENKELATTLIKKMQRASTAREAARKAREDARKGKSKGKSEKILSGKLASAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D +K EL+LVEGDSAGGSAKQGR + QAILPLRGK+LN E+A + ++E+ T+I Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 ALG G+G + F YHK+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADDDGAHIQILLLTFFYRYMRELIEKGMVYIAM 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 PPLY + +GK ++Y +E L+ N ++ + + + + Sbjct: 536 PPLYKLQKGKEMRYAWTDEELDQLRKNFPKGYTLQRYKGLGEMNADQLWDTTM 588 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 78/415 (18%), Positives = 142/415 (34%), Gaps = 19/415 (4%) Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSE------LFLVEGDSAGGSAKQ 441 T K V + G DC+ + + + + +V G Sbjct: 226 AFMEYLHEDKQTFHKPVAFSGEVNGIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETG 285 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 R+ + + + + + S L L GI ++ K+ Sbjct: 286 ARN-AFTKVFNDYARRNGLLKEKEKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLG 344 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561 +A I + L FF + L + + R + + + + Sbjct: 345 T-PEAKNAVDSIVSEKLNFFLEENKEL--------ATTLIKKMQRASTAREAARKAREDA 395 Query: 562 YLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621 E L SK+ + + K + V Sbjct: 396 RKGKSKGKSEKILSGKLASAQSKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKV 455 Query: 622 FNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSS 681 N E N+ +L ++ + ++H +N ++ + Sbjct: 456 LNTEKASITNIEKNEELNTIIHALGAGVGANFHAEDSNYHKVIIMTDADDDGAHI--QIL 513 Query: 682 IFSFGSKYKRIFSNR-IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 + +F +Y R + + + L + G +++ LD + KG ++QRYK Sbjct: 514 LLTFFYRYMRELIEKGMVYIAMPPLYKLQKGKEMRYAWTDEELDQLRKNFPKGYTLQRYK 573 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GLGEMNA QLW+TT+ P+TR+L++V I DA A+ S LMGD+ RR++I+EN Sbjct: 574 GLGEMNADQLWDTTMCPETRTLIQVSIEDAVVAEKRVSVLMGDKANLRRDWIEEN 628 >gi|289705900|ref|ZP_06502279.1| DNA gyrase, B subunit [Micrococcus luteus SK58] gi|289557385|gb|EFD50697.1| DNA gyrase, B subunit [Micrococcus luteus SK58] Length = 720 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 272/617 (44%), Positives = 376/617 (60%), Gaps = 43/617 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D Y A +I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GYA Sbjct: 38 DRKVPGEYGASAITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYAT 96 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VTL DG V+D+GRGIP DLH EG EV+MT LHAGGKF Y VSGGLHG Sbjct: 97 GIDVTLQADGGVRVADDGRGIPVDLHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHG 156 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG+SVVNALS + ++R+G+++ MSF + G+ L V G A + TGT TF P +I Sbjct: 157 VGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGEL-VKGEAMDATGTVQTFYPDPEI 215 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------------- 220 F +F+Y+TL+ R ++++FLN ++I+L D+R E E Sbjct: 216 FDSIEFDYETLRARFQQMAFLNRGLRITLTDERVQESNEVVDDEIAGEGAAGEDVAENGL 275 Query: 221 ------------ITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSR----DNISIDLA 262 +T Y+ G+ +V +L+ + + + I + ++++++A Sbjct: 276 AEEAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAEDVSDGRSMAVEVA 335 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M+W Y E+V + N I +GGTH G R+ALT + Y + K + ++ G+D Sbjct: 336 MQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEILKPKEDNLTGEDI 395 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T+V+S+K+ +P+F QTK KL +SE R V V D L W E +P AK I++K Sbjct: 396 REGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKA 455 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + AS R AAR+ARD RRK L+ +PGKLADCS +DP++ E+++VEGDSAGGSAKQG Sbjct: 456 IMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQG 515 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R+ E QAILPLRGKILNVERAR DK L + EI ++ITA GT IG++ FDI+KLRYHKI++ Sbjct: 516 RNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEE-FDISKLRYHKIVL 574 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 M DADVDG HI TLLLT FR M LI G +++ +PPLY I + + D Sbjct: 575 MADADVDGQHITTLLLTVLFRYMRPLIEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDA 634 Query: 563 LINQSLSEEIELFCDSK 579 + L++ D+ Sbjct: 635 AVEAGLAKGWRYPKDNG 651 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LW+TT++P+ R+LL+V + DA+ AD +FS LMG++VE RR FIQ+N Sbjct: 652 VQRYKGLGEMNYQELWDTTMDPEHRTLLQVTMEDAAAADAVFSMLMGEDVESRRSFIQQN 711 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 712 AKDIRFLDV 720 >gi|33469296|gb|AAQ19685.1| topoisomerase IV subunit B [Staphylococcus haemolyticus] Length = 658 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 266/592 (44%), Positives = 375/592 (63%), Gaps = 16/592 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 + Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY + I VT Sbjct: 1 NHYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGNEINVT 59 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 +N D S ++ DNGRG+P+ +H G EVI T LHAGGKF Q YK SGGLHGVG SV Sbjct: 60 INQDNSISIEDNGRGMPSGMHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASV 118 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VNALS WL++ I R+GNIY+ SF N G+ + L V TGT+VTF P +IF Sbjct: 119 VNALSEWLEVEIHRDGNIYKQSFKNGGVPASGL-VKSGKTKKTGTKVTFKPDPEIFKATT 177 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 FN++TL RL+E +FL +++I+L D R+ + RE Y+ GI+ FVSY++ K+ L Sbjct: 178 TFNFETLSERLQESAFLLKNLKITLKDLRNGKEREDVYHYEEGIKEFVSYVNEGKEVLH- 236 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 G+ + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Y Sbjct: 237 DVTMFTGASNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYAR 296 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 + K+ +++ G+D REG T+V+S+++P+ +F QTK KL +SE RS V+S V+D Sbjct: 297 RINELKEKDKNLDGNDIREGLTAVISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSDK 356 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERD 421 L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL ++ Sbjct: 357 LPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN 416 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I + Sbjct: 417 TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTI 476 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I PPL Sbjct: 477 GAGVGND-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPL 535 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 Y + + K ++Y ++ LE + G ++ L Sbjct: 536 YKLEKGKGKSKQVEYAWTDDELEKLQKKLGKGF-MLQRYKGLGEMNPEQLWE 586 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 372 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 431 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 432 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 491 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 + ++ + F F + + R+ + L G ++ Sbjct: 492 NRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKQVEYA 551 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMN QLWETT+NP+TR+L+RV+I D ++ Sbjct: 552 WTDDELEKLQKKLGKGFMLQRYKGLGEMNPEQLWETTMNPETRTLIRVQIEDEMRSSKRV 611 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 612 TTLMGDKVAPRREWIESH 629 >gi|223043196|ref|ZP_03613243.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14] gi|222443407|gb|EEE49505.1| DNA topoisomerase IV, B subunit [Staphylococcus capitis SK14] Length = 666 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 263/599 (43%), Positives = 368/599 (61%), Gaps = 17/599 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MAVN-KQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITVT+N D S ++ DNGRG+PT +H G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GDEITVTINQDDSISIEDNGRGMPTGIHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY SF + GI L G P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTF-KPDP 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+D L RL+E +FL +++I+L D RS + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKATTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKEREEVYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G +NI +++A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-DVTTFSGLANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNDYARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G D F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +I PPLY + + K ++Y ++ LE G ++ L Sbjct: 535 FIALPPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 592 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 + ++ + F F + + R+ + L G K+ Sbjct: 498 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKKVEYA 557 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 558 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 618 TTLMGDKVAPRREWIESH 635 >gi|78707333|gb|ABB46473.1| DNA gyrase subunit B [Acholeplasma axanthum] Length = 589 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 258/570 (45%), Positives = 372/570 (65%), Gaps = 4/570 (0%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T G GLHH+++E++DN+IDE+L GYAD I + L V+DNGRGI Sbjct: 1 VRKRPGMYIG-TTGTDGLHHLVWEIVDNSIDEALAGYADDIILELLPGEVVRVTDNGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D+H G A E I+T LHAGGKF+ SYKVSGGLHGVG SVVNALS W + + R Sbjct: 60 PVDIHPHTGRPAVETILTTLHAGGKFDSDSYKVSGGLHGVGASVVNALSEWYTVNVHRNN 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 Y + GI L+ G + + TGT F IF ++++ L+ R+++L+FL Sbjct: 120 KNYYQMYNRGIPAGDLIEKGLSEH-TGTITEFKFDPTIFKETQEYDFERLRQRIQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N ++I++ D R+ E T Y+GG+ + +L+ ++ + +S ++ D+I++++ Sbjct: 179 NRGIKITIKDLRTEAVVENTYHYEGGLVEYAEFLNGNRVKVNKSLFYVEKMVDDINVEIT 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M++ND +++N+ FTNNIP ++GG H G + ALTR + +Y + + K + IG+D Sbjct: 239 MQYNDSFNQNIYSFTNNIPTREGGMHEDGFKMALTRILNNYAKANKMLKDTEDGFIGEDT 298 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG +LS+K PDP+F QTK KL ++EVR +V +++GL +L E+P +AK I+ KV Sbjct: 299 REGLIVILSVKHPDPQFEGQTKTKLGNTEVRQIVSQILSEGLDRFLLENPQDAKAIIDKV 358 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + A R AAR+AR+ TRRK LD KLADC ++ +K+EL++VEGDSAGGSAKQG Sbjct: 359 VLAQRARVAARKAREATRRKNPLDSLGFASKLADCRTKNAEKAELYIVEGDSAGGSAKQG 418 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAILPLRGK+LNVE+AR DK+LS+ EI L A+G+GIG + D +K RYHKI+I Sbjct: 419 RESEYQAILPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDEL-DPSKARYHKIVI 477 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTFF+R + LI G++Y +PPLY ++ GK ++YV D+E+L + Sbjct: 478 MTDADVDGAHIRTLLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEALPEI 537 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFID 592 +++ + + + +D Sbjct: 538 AATFDGRYQMQRYKGLGEMNPEQLWETTMD 567 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 18/178 (10%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDIL 663 +E+A + + + + ++ S + + L+ + K + + D Sbjct: 427 LPLRGKVLNVEKARLDKILSNNEILMLFQAIGSGIGDELDPSKARYHKIVIMTDADVDGA 486 Query: 664 VKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLI-CNGDKIKITGPCSL 722 R + +F ++ R + + +G +I+ Sbjct: 487 HIRT-------------LLLTFFYRHLRPLIDLGYIYFAQPPLYKLSSGKRIEYVYDDEA 533 Query: 723 LDTIFS--IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L I + GR MQRYKGLGEMN QLWETT++P+TR+LLRV + DA AD +FS Sbjct: 534 LPEIAATFDGR--YQMQRYKGLGEMNPEQLWETTMDPETRTLLRVTLKDAMDADQVFS 589 >gi|239916576|ref|YP_002956134.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] gi|281414960|ref|ZP_06246702.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] gi|239837783|gb|ACS29580.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665] Length = 720 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 272/617 (44%), Positives = 377/617 (61%), Gaps = 43/617 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D Y A +I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GYA Sbjct: 38 DRKVPGEYGASAITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYAT 96 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VTL DG V+D+GRGIP DLH EG EV+MT LHAGGKF Y VSGGLHG Sbjct: 97 GIDVTLQADGGVRVADDGRGIPVDLHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHG 156 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG+SVVNALS + ++R+G+++ MSF + G+ L V G A + TGT TF P ++I Sbjct: 157 VGISVVNALSRRVDTEVRRQGHVWRMSFADGGVPQGEL-VKGEATDATGTVQTFYPDAEI 215 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------------- 220 F +F+Y+TL+ R ++++FLN ++I+L D+R E E Sbjct: 216 FDSIEFDYETLRARFQQMAFLNKGLRITLTDERVQESNEVVDDEIAGEGAAGEDVAENGL 275 Query: 221 ------------ITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSRD----NISIDLA 262 +T Y+ G+ +V +L+ + + + I + ++++++A Sbjct: 276 AEDAEQEPQRRSVTYLYENGLLDYVQHLNSAKKVEYVHDDVIAFEAEDFSDGRSMAVEVA 335 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 M+W Y E+V + N I +GGTH G R+ALT + Y + K + ++ G+D Sbjct: 336 MQWTSAYSESVHTYANTINTHEGGTHEEGFRAALTSLVNRYAREKEILKPKEDNLSGEDI 395 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG T+V+S+K+ +P+F QTK KL +SE R V V D L W E +P AK I++K Sbjct: 396 REGLTAVISVKLSEPQFEGQTKTKLGNSEARGFVSKAVTDHLGDWFERNPGPAKEIIRKA 455 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 + AS R AAR+ARD RRK L+ +PGKLADCS +DP++ E+++VEGDSAGGSAKQG Sbjct: 456 IMASHARLAARKARDNARRKSPLESFGMPGKLADCSSKDPERCEVYIVEGDSAGGSAKQG 515 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R+ E QAILPLRGKILNVERAR DK L + EI ++ITA GT IG++ FDI+KLRYHKI++ Sbjct: 516 RNPETQAILPLRGKILNVERARLDKALGNAEIQSMITAFGTNIGEE-FDISKLRYHKIVL 574 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 M DADVDG HI TLLLT FR M LI G +++ +PPLY I + + D Sbjct: 575 MADADVDGQHITTLLLTVLFRYMRPLIEAGHVFLAQPPLYRIKWSNAPHDYVFSDEERDA 634 Query: 563 LINQSLSEEIELFCDSK 579 + L++ D+ Sbjct: 635 AVEAGLAKGWRYPKDNG 651 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 54/69 (78%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LW+TT++P+ R+LL+V + DA+ AD +FS LMG++VE RR FIQ+N Sbjct: 652 VQRYKGLGEMNYQELWDTTMDPEHRTLLQVTMEDAAAADAVFSMLMGEDVESRRTFIQQN 711 Query: 796 SLPSA-LDI 803 + LD+ Sbjct: 712 AKDIRFLDV 720 >gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118] gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118] gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713] gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 652 Score = 543 bits (1400), Expect = e-152, Method: Composition-based stats. Identities = 282/592 (47%), Positives = 404/592 (68%), Gaps = 7/592 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+AD Sbjct: 11 QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFAD 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S TV DNGRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHG Sbjct: 70 EINVTVEEDNSITVKDNGRGIPVDIQKKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179 VG SVVNALS+ L +++ R + N+Y M F G + + V G ++ GT V F P Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 DIF+ ++ + L R+REL+FLN ++I++ DKR EP Y GGI+ ++ +L++ Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKRQEEPTHEEFHYAGGIKHYIEFLNK 249 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ + PI ++G ++ I++++A+++ + +H N+L FTNNI +GGTH SG ++ALTR Sbjct: 250 GKEVIFPEPIYVEGEQNGITVEVALQYTNDFHSNLLSFTNNIHTYEGGTHESGFKTALTR 309 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y KS K++ ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R V + Sbjct: 310 VINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDK 369 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ + ++ E+P AK IV+K L A+ R AA+RAR++TR+K L+I++LPGKLAD + Sbjct: 370 LFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNT 429 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI +L Sbjct: 430 SKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLF 489 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTG G++ FD++K YHK+IIMTDADVDGAHIRTLLLT +R M ++ G++YI + Sbjct: 490 TALGTGFGEE-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQ 548 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY + +GK ++Y+ +E L D L + S + + G + L Sbjct: 549 PPLYQVRQGKMIKYIDSDEELNDVLGSLPPSPKPVIQRYKGLGEMDAEQLWE 600 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT+NP+ R LLRV+++DA +A+++F LMGD V PRR+FI++N Sbjct: 584 IQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEMLMGDHVGPRRQFIEDN 643 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 644 ATFVNNLDV 652 >gi|290958999|ref|YP_003490181.1| DNA gyrase subunit B [Streptomyces scabiei 87.22] gi|260648525|emb|CBG71636.1| DNA gyrase subunit B [Streptomyces scabiei 87.22] Length = 681 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 286/651 (43%), Positives = 400/651 (61%), Gaps = 24/651 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 ++YDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD Sbjct: 22 EASATAYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADT 80 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGV Sbjct: 81 IDVTILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 140 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS+ + + IK +G+ + + G+ PL A ++ GT VTF DIF Sbjct: 141 GVSVVNALSTRVSVEIKTDGHRWTQDYKLGVPTAPLAQ-HEATDEHGTTVTFWADPDIFE 199 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKG 227 +++++TL R +E++FLN ++I+L D+R E + ++ Y+G Sbjct: 200 TTEYSFETLSRRFQEMAFLNKGLRINLADERESAKATAGADEAGEDEKHEVKSVSYHYEG 259 Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 GI FV Y R + + I ++ ++S++LAM+WN GY E V F N I + Sbjct: 260 GIVDFVKYLNSRKGDVVHPTVIDLEAEDKDRSLSLELAMQWNSGYTEGVYSFANIIHTHE 319 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH G R+ALT + Y + ++ ++ GDD REG T+++S+K+ +P+F QTK Sbjct: 320 GGTHEEGFRAALTNLVNKYAREKKLLREKDDNLTGDDIREGLTAIISVKLSEPQFEGQTK 379 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL ++EV++ V+ V + L+ WL+ +P+EA IV+K + A+ R AAR+ARDLTRRKG+ Sbjct: 380 TKLGNTEVKTFVQKVVYEHLNDWLDRNPVEAADIVRKGIQAATARVAARKARDLTRRKGL 439 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+AR Sbjct: 440 LETASLPGKLSDCQSNDPIKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKAR 499 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 DK+L +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR Sbjct: 500 IDKILQNQEIQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 558 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 M L+ G +++ +PPLY I G+ + D LI + DS Sbjct: 559 MRPLVEAGHVFLSRPPLYKIKWGREDIEYAYSDRERDALIEMGRQRGKRIREDSIQRFKG 618 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 L + L+I + ++ T + A +F+ +++ A Sbjct: 619 --LGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 667 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR-KGI-----SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR +G S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 595 DALIEMGRQRGKRIREDSIQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 654 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 655 SVLMGEDVEARRAFIQRNAKDVRFLDI 681 >gi|314933532|ref|ZP_07840897.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87] gi|313653682|gb|EFS17439.1| DNA topoisomerase IV, B subunit [Staphylococcus caprae C87] Length = 664 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 261/595 (43%), Positives = 365/595 (61%), Gaps = 16/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY D I Sbjct: 2 NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT+N D S ++ DNGRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 TVTINQDDSISIEDNGRGMPTGIHAS-GKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I R+GNIY SF + GI L G P +IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGIPATGLNKKGKTKKTGTKVTF-KPDPEIFK 178 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+D L RL+E +FL +++I+L D RS + RE Y+ GI+ FVSY++ K+ Sbjct: 179 ATTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKEREEVYHYEEGIKEFVSYVNEGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L G +NI +++A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 239 LH-DVTTFSGLANNIEVEVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFND 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V+S V Sbjct: 298 YARRINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 358 SEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKHKDTLLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D F I Y+++IIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I Sbjct: 478 HTIGAGVGND-FKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + K ++Y ++ LE G ++ L Sbjct: 537 PPLYKLEKGKGKTKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKHKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG- 718 + ++ + F F + + R+ + L G K+ Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKKVEYA 555 Query: 719 -PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 616 TTLMGDKVAPRREWIESH 633 >gi|307128690|ref|YP_003880720.1| DNA gyrasesubunit B [Candidatus Sulcia muelleri CARI] gi|306483152|gb|ADM90022.1| DNA gyrase B subunit [Candidatus Sulcia muelleri CARI] Length = 638 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 246/588 (41%), Positives = 361/588 (61%), Gaps = 9/588 (1%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 +Y + +IQ + G++ V+ RPSMYIGD G GLHHM+YEV+DN+IDESL G+ + I VT+ Sbjct: 2 NYTSKNIQYIDGIEHVRLRPSMYIGDI-GIQGLHHMVYEVVDNSIDESLSGFCNKIYVTI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 + D S T+ DNGRGIP DLHK++GISA E++MT++ AGGKF+ SYKVSGGLHGVG+S V Sbjct: 61 HKDNSITILDNGRGIPVDLHKKKGISALELVMTKIGAGGKFDNNSYKVSGGLHGVGISCV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFN 188 NALSS L ++ R G IYE + GI + + + G N GT+++F IF +N Sbjct: 121 NALSSNLIAKVYRNGKIYEQKYSRGIPISKINIIGKCHNKVGTKISFKADKLIFKKIKYN 180 Query: 189 YDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPI 248 Y L +RLRELS+LN + I L+D+R + + + + + I Sbjct: 181 YSILMNRLRELSYLNKGLSIYLLDEREIDKNGNFKKKIFFSKKGIKEFLIFIEKKNDNII 240 Query: 249 RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSF 308 I+ + ++LAMR+N + E + + NNI GGTH+SG + ALT+ + + K F Sbjct: 241 YIKKKNLKLELELAMRFNSSFKEKIYSYVNNINTSQGGTHISGFKRALTKTLKKFFYKFF 300 Query: 309 GSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWL 368 KK+K + G + REG T++L+I++ +P+F Q K KLV++E+ +VE +N +S + Sbjct: 301 PLKKNKIEITGKNLREGLTAILAIRIINPQFEGQIKNKLVNNEIIGLVEKIINKHISIFF 360 Query: 369 EEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELF 428 +++ K I+KK+ + + ++AR+L +K + LP KLADCS DP E++ Sbjct: 361 KKNIFFLKKILKKIFLSVKAQKTLKKARELINKKTSIHK-FLPIKLADCSFNDPNLCEIY 419 Query: 429 LVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI--- 485 LVEGDSAGG+AKQGR R+ QA+LPLRGKILNVE+ +K+ S++EI +I+ALG I Sbjct: 420 LVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKNIINKIFSNEEIKNIISALGVYIFFE 479 Query: 486 -GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 + + +I+ LRY KIIIMTDAD+DG+HI TL+LT FF+ M LI G++YI PPL+ I Sbjct: 480 KKKINLNIDNLRYKKIIIMTDADIDGSHISTLILTLFFKYMRILIEKGYIYIATPPLFLI 539 Query: 545 TRGKSLQYVKDEESLEDYLINQSLS---EEIELFCDSKGVISKNDLRN 589 Y +E+ L ++ + G ++ L Sbjct: 540 KTFNKKFYAWNEKERNKILKKLKMNSLKKISVQRYKGLGEMNAEQLWE 587 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 9/202 (4%) Query: 604 FYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL---ANRLNFIAEKSEKSWHGSINNS 660 +E+ +I+ +F+ E + I +L + ++N + + ++ Sbjct: 442 LPLRGKILNVEKNIINKIFSNEEIKNIISALGVYIFFEKKKINLNIDNLRYKKIIIMTDA 501 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC 720 DI I+ + F + G Y + + + ++ KI Sbjct: 502 DIDGSHISTLILTLFFKYMRILIEKGYIYIATPPLFLIKTFNKKFYAWNEKERNKI---- 557 Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 L + K IS+QRYKGLGEMNA QLWETT+NP R+L +V I++ A ++F L Sbjct: 558 --LKKLKMNSLKKISVQRYKGLGEMNAEQLWETTMNPINRTLRKVTISNLKIAKNIFYML 615 Query: 781 MGDEVEPRREFIQENSLPSALD 802 MG+ V PR++FI++N + + +D Sbjct: 616 MGNNVIPRKKFIEKNYIFANID 637 >gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741] gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741] Length = 652 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 282/592 (47%), Positives = 404/592 (68%), Gaps = 7/592 (1%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + YDA IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DN IDE+L G+AD Sbjct: 11 QEEKAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSQ-GLHHLVWEIIDNGIDEALAGFAD 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D S TV DNGRGIP D+ K+ G A E + T LHAGGKF YKVSGGLHG Sbjct: 70 EINVTVEEDNSITVKDNGRGIPVDIQKKTGRPALETVFTVLHAGGKFGGGGYKVSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKR--EGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSS 179 VG SVVNALS+ L +++ R + N+Y M F G + + V G ++ GT V F P Sbjct: 130 VGASVVNALSTNLDVKVMREDDENVYGMDFKLGKVATSMTVVGKCPRHEHGTIVHFKPDP 189 Query: 180 DIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 DIF+ ++ + L R+REL+FLN ++I++ DKR EP Y GGI+ ++ +L++ Sbjct: 190 DIFTETTTYDINVLTKRIRELAFLNKGLKITIDDKRQEEPTHEEFHYAGGIKHYIEFLNK 249 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ + PI ++G ++ I++++A+++ + +H N+L FTNNI +GGTH SG ++ALTR Sbjct: 250 GKEVIFPEPIYVEGEQNGITVEVALQYTNDFHSNLLSFTNNIHTYEGGTHESGFKTALTR 309 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I Y KS K++ ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R V + Sbjct: 310 VINDYGRKSGLIKENDANLSGEDVREGLTAVVSIKHPNPQFEGQTKTKLGNSDARKVTDK 369 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ + ++ E+P AK IV+K L A+ R AA+RAR++TR+K L+I++LPGKLAD + Sbjct: 370 LFSETFNKFMLENPTVAKQIVEKGLLAAKARIAAKRAREVTRKKNGLEISNLPGKLADNT 429 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP+ SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L+++EI +L Sbjct: 430 SKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATIDRILANEEIRSLF 489 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TALGTG G++ FD++K YHK+IIMTDADVDGAHIRTLLLT +R M ++ G++YI + Sbjct: 490 TALGTGFGEE-FDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRFMKPMLDAGYVYIAQ 548 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 PPLY + +GK ++Y+ +E L D L + S + + G + L Sbjct: 549 PPLYQVRQGKMIKYIDSDEELNDVLGSLPSSPKPVIQRYKGLGEMDAEQLWE 600 Score = 158 bits (399), Expect = 5e-36, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A QLWETT+NP+ R LLRV+++DA +A+++F LMGD V PRR+FI++N Sbjct: 584 IQRYKGLGEMDAEQLWETTMNPENRRLLRVELSDAEEANEVFEMLMGDHVGPRRQFIEDN 643 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 644 ATFVNNLDV 652 >gi|299822648|ref|ZP_07054534.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] gi|299816177|gb|EFI83415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM 20601] Length = 657 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 264/662 (39%), Positives = 385/662 (58%), Gaps = 21/662 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + + Y+ DSIQ+L+GLDAV+KRP+MYIG TD GLHH++YE++DN++DE+L G+ Sbjct: 1 MSKPM--NEYNDDSIQVLEGLDAVRKRPAMYIGSTD-VRGLHHLVYEIVDNSVDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGG 119 + ITV + D S ++ D GRG+P H + G S EVI+T LHAGGKF Q+ YK SGG Sbjct: 58 GERITVKIYKDQSISIEDEGRGMPVGTH-KTGKSTVEVILTVLHAGGKFGQEGGYKTSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS WLK+ + R+G IYE +F + G + L G GT++ F P Sbjct: 117 LHGVGSSVVNALSEWLKVTVYRDGAIYEQNFADGGKPVDKLKKIGKTK-RRGTKIHFKPD 175 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF + FNYDTL RLRE +FL + I L D+R+ E ++ G++ FV Y++ Sbjct: 176 PAIFPMTSFNYDTLSERLRESAFLLKGMAIELSDERTG--AEEIFQFEEGVKNFVEYINE 233 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K L I G +I ++LA ++NDGY EN+L F NN+ + GTH SG+++A+TR Sbjct: 234 GKDVLHPVVD-IDGESGSIEMELAFQFNDGYSENILSFVNNVRTRGAGTHESGMKAAMTR 292 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K+ +++ G D REG ++VLSI++P+ +F QTKEKL ++E R+ V Sbjct: 293 VFNDYARRVGMLKEKDKNLEGSDIREGLSAVLSIRVPENLLQFEGQTKEKLGTAEARAAV 352 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 ++ V + L+ +L E+P + ++VKK + A R+AAR+AR+ TR +K L GKL Sbjct: 353 DAVVTEHLAYFLAENPDTSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSGKL 412 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 R+P K+EL+LVEGDSAGGSAKQGR R QAILPLRGK++N E+A+ +L ++EI Sbjct: 413 TPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNEEI 472 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G + F++ Y KI+IMTDAD DGAHI+ LLLTFF+R M LI G + Sbjct: 473 STIIHTVGAGVGAE-FNLEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGKI 531 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 +I PPLY +++G + V +Y E +I + ++ Sbjct: 532 FIALPPLYKVSKGAGKKEVL------EYAWTDDELEGAISKIGKGYMIQRYKGLGEMNAD 585 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWH 654 + + + I+ + + + + F E + Sbjct: 586 QLWETTMDPETRTLIRVRIDDIARAERRVATLMGDKVEPRRKWIEKHVEFTMEDDQNILE 645 Query: 655 GS 656 Sbjct: 646 NE 647 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 106/264 (40%), Gaps = 8/264 (3%) Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKID 598 + + + ++ + S + ++ ++ Sbjct: 370 TSSLLVKKAIKAREAREAARKAREETRNGKKRKRSETILSGKLTPAQSRNPNKNELYLVE 429 Query: 599 KLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + QA++ V N E + ++ +++ ++ + ++ Sbjct: 430 GDSAGGSAKQGRDRRFQAILPLRGKVINTEKAKLPDILKNEEISTIIHTVGAGVGAEFNL 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N D +V + F + I + +I + + K + Sbjct: 490 EDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMTPLIEAGKIFIALPPLYKVSKGAGKKE 549 Query: 716 IT----GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS 771 + L I IG KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I D + Sbjct: 550 VLEYAWTDDELEGAISKIG-KGYMIQRYKGLGEMNADQLWETTMDPETRTLIRVRIDDIA 608 Query: 772 QADDLFSRLMGDEVEPRREFIQEN 795 +A+ + LMGD+VEPRR++I+++ Sbjct: 609 RAERRVATLMGDKVEPRRKWIEKH 632 >gi|254387096|ref|ZP_05002370.1| DNA gyrase subunit B [Streptomyces sp. Mg1] gi|194345915|gb|EDX26881.1| DNA gyrase subunit B [Streptomyces sp. Mg1] Length = 686 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 280/659 (42%), Positives = 389/659 (59%), Gaps = 23/659 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 29 TASYDASAIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIDV 87 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP D+ EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 88 TILADGGVRVVDNGRGIPVDIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 147 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +KR+G + + G L + GT VTF DIF + Sbjct: 148 VVNALSTKVAVEVKRDGYRWTQDYKLGAPTAALAKNEET-DAHGTTVTFWADGDIFETTE 206 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITMFYKGGI 229 ++++TL R +E++FLN + ++L D+R P R + +Y+GGI Sbjct: 207 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATVGADDPDADAVEPPARTVKYYYEGGI 266 Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV Y R + + + I ++ +S+++AM+WN Y E V F N I +GG Sbjct: 267 VDFVKYLNSRKGEMIHPTVIDVEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGG 326 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK K Sbjct: 327 THEEGFRAALTGLVNRYARDKKLLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQTKTK 386 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L ++E ++ V+ V++ L+ W + +P+EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 387 LGNTEAKTFVQKVVHEHLNDWFDRNPVEAADIIRKSIQAATARVAARKARDLTRRKGLLE 446 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR D Sbjct: 447 SASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARID 506 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 K+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 507 KILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMR 565 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 566 PLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRFKGLG 625 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 626 EMNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 684 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 600 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 660 SVLMGEDVEARRSFIQRNAKDVRFLDI 686 >gi|295394842|ref|ZP_06805055.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] gi|294972175|gb|EFG48037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Brevibacterium mcbrellneri ATCC 49030] Length = 664 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 275/652 (42%), Positives = 386/652 (59%), Gaps = 27/652 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + N YDAD I +L+GL+AV+KRP MYIG T E GLHH++YE++DNA+DE+L G+ Sbjct: 1 MTAD-DNRHYDADDITVLEGLEAVRKRPGMYIGSTS-ERGLHHLVYEIVDNAVDEALAGF 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VT+ DG V D GRGIP +H E + +V++T LHAGGKF Y VSGGL Sbjct: 59 NDRIHVTILADGGVRVEDRGRGIPVAIHSTEKVPTLQVVLTILHAGGKFGGGGYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS + + R+G ++ S+ G+ + G A + TGT +TF P + Sbjct: 119 HGVGSSVVNALSKRMDAEVHRDGFVWRQSYERGVPTGEVTK-GEAADHTGTIITFWPDEE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP----------------EPREITMF 224 IF FN++TL+ R ++++FLN + I+L D+R+ +PRE+T Sbjct: 178 IFDTVQFNFETLRARFQQMAFLNKGLSITLRDERAEQVNDDDVQLEEQEEEFKPREVTFK 237 Query: 225 YKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y G+ +V YL+ K +P+ + I + + I++++AM+W Y E+V + N I Sbjct: 238 YDNGLFDYVKYLNSTKKSEPVHEDIISFEAEDTEETIALEVAMQWTSSYAESVHTYANTI 297 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R ALT I +Y + K+ ++ GDD REG T+V+SIK+ +P+F Sbjct: 298 NTHEGGTHEEGFRIALTNLINAYAREQKLLKEKDTNLTGDDVREGLTAVISIKLGEPQFE 357 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL +SE R V+ V D L WLE +P++AK +V+K + AS R AAR+AR+ TR Sbjct: 358 GQTKTKLGNSEARGFVQRVVRDHLGHWLESNPMQAKEVVRKAIQASQARMAARKAREATR 417 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK +L+ + LPGKL DC +DP SE+F+VEGDSAGGSA QGR QAILPLRGKILNV Sbjct: 418 RKSLLESSGLPGKLKDCQSKDPSISEVFIVEGDSAGGSAVQGRDPLTQAILPLRGKILNV 477 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 E+AR D+ LS+ E+ ++ITA GTGIG D FDI KLRYHKI++M DADVDG HI TLLLT Sbjct: 478 EKARLDRALSNLEVQSMITAFGTGIG-DEFDIEKLRYHKIVLMADADVDGQHITTLLLTL 536 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FR M LI G +Y+ PPLY I + ++ + + L + + + Sbjct: 537 IFRYMKPLIERGHVYLATPPLYRIKWSNAADEFAYTDRERDALLTDGRANGKRLPKELGI 596 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 N+ + T + V +F+ +++ Sbjct: 597 QRYKGLGEMNYHELWETTMNPDHRLLKQV--TLDDAMVADEIFSVLMGDDVD 646 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 8/88 (9%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + GR K + +QRYKGLGEMN +LWETT+NPD R L +V + DA AD++ Sbjct: 577 DALLTDGRANGKRLPKELGIQRYKGLGEMNYHELWETTMNPDHRLLKQVTLDDAMVADEI 636 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V+ R+ FIQEN+ LDI Sbjct: 637 FSVLMGDDVDSRKRFIQENAKDVRFLDI 664 >gi|242373650|ref|ZP_04819224.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis M23864:W1] gi|242348618|gb|EES40220.1| DNA topoisomerase (ATP-hydrolyzing) [Staphylococcus epidermidis M23864:W1] Length = 664 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 261/595 (43%), Positives = 366/595 (61%), Gaps = 16/595 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY D I Sbjct: 2 NKQNTYSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGYGDEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 TVT+N D S ++ DNGRG+PT +H G EVI T LHAGGKF Q YK SGGLHGVG Sbjct: 61 TVTINKDDSISIKDNGRGMPTGIHAS-GKPTVEVIFTILHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS WL++ I R+GNIY SF + G+ L G P +IF Sbjct: 120 ASVVNALSEWLEVEIHRDGNIYTQSFKDGGMPATGLNKKGKTKKTGTKVTF-KPDPEIFK 178 Query: 184 -VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 FN+D L RL+E +FL +++I+L D RS + RE Y+ GI+ FVSY++ K+ Sbjct: 179 ATTSFNFDVLSERLQESAFLLKNLKITLTDLRSGKEREEVYHYEEGIKEFVSYVNEGKEV 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 L G +NI +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 239 LH-DVTTFSGLANNIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFND 297 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y + K+ +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V+S V Sbjct: 298 YARRINELKEKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVV 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCS 418 ++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 358 SEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQ 417 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 ++ K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI T+I Sbjct: 418 SKNTDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTII 477 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G + F I Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G ++I Sbjct: 478 HTIGAGVGNE-FKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIAL 536 Query: 539 PPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY + + K ++Y ++ LE G ++ L Sbjct: 537 PPLYKLEKGKGKSKKVEYAWTDDELEKLQKQLGKGF-TLQRYKGLGEMNPEQLWE 590 Score = 154 bits (389), Expect = 7e-35, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 376 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTDKNELYLVEGDSAG 435 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 436 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNEFKIEDSNY 495 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 + ++ + F F + + R+ + L K++ Sbjct: 496 NRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKKVEYA 555 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG ++QRYKGLGEMN QLWETT+NP+TR+L+RV++ D ++ Sbjct: 556 WTDDELEKLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSKRV 615 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 616 TTLMGDKVAPRREWIESH 633 >gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 662 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 252/593 (42%), Positives = 354/593 (59%), Gaps = 11/593 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++ YDA SIQ+L+GL+ V+KRP MYIG T GLHH+++EVLDN++DE G+A + Sbjct: 20 ESGDYDAGSIQVLQGLEPVRKRPGMYIGSTS-TKGLHHLVWEVLDNSVDEVQAGHASHVR 78 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF--NQKSYKVSGGLHGV 123 V + +G +V D+GRGIPTD+H G S+ E ++T LHAGGKF + Y VSGGLHGV Sbjct: 79 VVVEENGFVSVVDDGRGIPTDVHPVTGKSSLETVLTILHAGGKFGGDSSGYHVSGGLHGV 138 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS--AGNDTGTEVTFLPSSDI 181 G+SVVNALS +++ + R GN Y SF GI P+ +G GT + F P I Sbjct: 139 GISVVNALSELVEVTVWRNGNEYIQSFSRGIALGPMQEKKQDGSGQKKGTMIRFKPDDQI 198 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLI--DKRSPEPREITMFYKGGIEAFVSYLDRH 239 F F+ ++ R++EL+FLNS ++ L DK++ E + + + G++ +V L Sbjct: 199 FDKVKFDPTIIRTRMKELAFLNSGTELHLRTFDKKTKEYEDEKLLFAEGLKDYVLDLTSD 258 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 L PI G+ D + ++ A+ W D Y + +L + N+I DGGTHL GL+ +LT+ Sbjct: 259 ATRLH-EPITFSGTMDGVRVEGALCWTADSYSDTLLGYANSIRTTDGGTHLDGLKYSLTK 317 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + K+ K ++ GD REG + V+++ +P+P F QTK +L +SEVR +VE+ Sbjct: 318 TLNVVSRKAKLLKDSDPNLGGDHIREGLSGVIAVWVPEPEFEGQTKTRLGNSEVRRIVEN 377 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ND ++ +E +P K I K A +AA+RAR++ RRK VL LPGKL+DCS Sbjct: 378 IANDAVAGHMEFNPSVLKSIFAKAQSAFKAAEAAKRAREMVRRKTVLTSNRLPGKLSDCS 437 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML-SSQEIGTL 477 D ++E+FLVEGDSAGGS KQGR R QA+LPLRGKI+NVER L + EI + Sbjct: 438 SSDADQTEIFLVEGDSAGGSCKQGRDRGFQAVLPLRGKIMNVERKLDAAALYKNTEITNM 497 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I+ALG G + D LRY KIII+TDADVDGAHIRTLLLTF +R L G++Y Sbjct: 498 ISALGLGGMGEDLDTTALRYSKIIILTDADVDGAHIRTLLLTFLYRYQRDLFEKGYVYAA 557 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE-LFCDSKGVISKNDLRN 589 PPLY + GK Y DE+ L++ L++ G + L + Sbjct: 558 VPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAKHIQRFKGLGEMMPEQLWS 610 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 681 SIFSFGSKYKRIFSNR--IEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGI-SMQ 737 + +F +Y+R + + + ++ + L + + S+ G +Q Sbjct: 536 LLLTFLYRYQRDLFEKGYVYAAVPPLYKVVVGKKETYCYDEDDLQEVLVSLPEGGAKHIQ 595 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFI 792 R+KGLGEM QLW TTLNP TR L R+ + DAS A+ +FS LM +VEPRR+ I Sbjct: 596 RFKGLGEMMPEQLWSTTLNPKTRVLKRLTVDDASAANHMFSTLMSKDVEPRRKLI 650 >gi|118420998|dbj|BAF37224.1| DNA gyrase subunit B [Marinobacter hydrocarbonoclasticus] Length = 475 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 284/477 (59%), Positives = 368/477 (77%), Gaps = 3/477 (0%) Query: 32 IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91 IGDTD +GLHHM++E++DN+IDE+L GY I + ++ D S TV DNGRGIP DLH+EE Sbjct: 1 IGDTDDGTGLHHMVFELVDNSIDEALAGYCSEIGIIIHPDESITVKDNGRGIPVDLHEEE 60 Query: 92 GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151 G+SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALSS L L I+R+G +YE S+ Sbjct: 61 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSSLTLTIRRDGKVYEQSYT 120 Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211 +G+ + PL G + +GT+V F+PS + F+ F+YD L RLREL+FLNS V+I L Sbjct: 121 HGVPNAPLGEVGET-DASGTKVHFIPSPETFTHIQFHYDILAKRLRELAFLNSGVRIRLT 179 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHE 271 D+RS + Y+GG+ AFV +L+ +K + + + D I++++AM+WND + E Sbjct: 180 DERSGKE--EIFEYEGGLRAFVEHLNTNKTAINRVFHFNREREDGIAVEVAMQWNDAFQE 237 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 N+ CFTNNIPQ+DGGTHL+G R+ALTR + +Y++ KK K + GDD REG T+++S Sbjct: 238 NIYCFTNNIPQRDGGTHLAGFRAALTRSLNNYIDHEGLGKKAKVATSGDDAREGLTAIIS 297 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 +K+PDP+FSSQTK+KLVSSEV++ VE + + +L+E P EAK IV K+++A+ R+A Sbjct: 298 VKVPDPKFSSQTKDKLVSSEVKTAVEQELYQSFAEYLQEQPNEAKQIVNKMIEAARAREA 357 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 AR+ARD+TRRKG LDIA LPGKLADC E+DP SELF+VEGDSAGGSAKQGR R+ QAIL Sbjct: 358 ARKARDMTRRKGALDIAGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKTQAIL 417 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 PL+GKILNVE+ARFDKMLSS E+GTLITALG GIG++ F+ +KLRYH IIIMTDADV Sbjct: 418 PLKGKILNVEKARFDKMLSSAEVGTLITALGCGIGREEFNPDKLRYHSIIIMTDADV 474 >gi|169350467|ref|ZP_02867405.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552] gi|169292787|gb|EDS74920.1| hypothetical protein CLOSPI_01235 [Clostridium spiroforme DSM 1552] Length = 642 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 266/596 (44%), Positives = 369/596 (61%), Gaps = 16/596 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 +SYD +IQIL+GL+AV+KRP MYIG TD GLHH+++E++DNAIDE+L G+ D I Sbjct: 3 AKNSYDESNIQILEGLEAVRKRPGMYIGSTDS-RGLHHLVWEIVDNAIDEALSGFGDNIQ 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGVG 124 VT+ D S VSD+GRG+PT +H G A EVI+T LHAGGKFN YK SGGLHGVG Sbjct: 62 VTICKDNSIIVSDHGRGMPTGMHAS-GRPATEVILTVLHAGGKFNEDGGYKTSGGLHGVG 120 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS+WL++ + R+G I++ F N G L V G N TGT + FLP + IFS Sbjct: 121 ASVVNALSTWLEVTVYRDGKIWQQRFENGGSKIGKLKVVGKT-NKTGTTIHFLPDASIFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 ++N+ T+ RL E +FL ++I L D+RS + + Y G+ AFV YL+ K L Sbjct: 180 TTEYNFSTISERLMESAFLLKGIRIDLKDERSDKE--VVYQYDNGLIAFVEYLNYEKDVL 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 I I+G + I +DLAM++ GY EN L F N + DGG+H +G RSALTR Y Sbjct: 238 NP-IISIEGINNEIEVDLAMQFTSGYQENTLSFVNLVRTSDGGSHETGFRSALTRTFNEY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVN 361 K K+ +++ G+D REG ++++SIK+P+ +F QTK KL + E R+VV++ V Sbjct: 297 ARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHLLQFEGQTKSKLGTPEARNVVDNIVY 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASM-VRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + LS +LEE+ A +++KK++ A+ A + + KG L GKLA + Sbjct: 357 EKLSFYLEENKQIADVLIKKMIKAAQVRDAARKAREAARKGKGTRQEKILSGKLAPAQSK 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K+ EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI T+I Sbjct: 417 DKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVINTEKAAMSDILKNEEIATIINT 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G D F+ Y+K+IIMTDAD DGAHI+TLLLTFF+R M LI G +YI PP Sbjct: 477 IGAGVGAD-FNEKDSNYNKVIIMTDADTDGAHIQTLLLTFFYRYMKGLITAGKVYIALPP 535 Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LY I++ Y ++ LED ++ + + + ++ Sbjct: 536 LYKISKKNGKKEEAIYAWQDDELEDAKKKIGKGYVVQRYKGLGEMNASQLWETTMN 591 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ ++A +N I ++ +N + ++ + Sbjct: 453 VINTEKAAMSDILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHIQTLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI---FSIGRK----G 733 F + I + ++ + + K + ++ +K G Sbjct: 513 LTFFYRYMKGLITAGKVYIALPPLYKISKKNGKKE----EAIYAWQDDELEDAKKKIGKG 568 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +QRYKGLGEMNASQLWETT+NP+TR+L++V I DA+ + S LMGD+VEPRRE+I+ Sbjct: 569 YVVQRYKGLGEMNASQLWETTMNPETRTLIQVSIDDAALVERRVSVLMGDKVEPRREWIE 628 Query: 794 EN 795 +N Sbjct: 629 QN 630 >gi|42519096|ref|NP_965026.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533] gi|41583383|gb|AAS08992.1| topoisomerase IV subunit B [Lactobacillus johnsonii NCC 533] Length = 652 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 271/601 (45%), Positives = 373/601 (62%), Gaps = 14/601 (2%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N SSYD SIQIL GL+AV+KRP MYIG TD GL+H+IYE++DN++DE++ G Sbjct: 1 MAKANKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT++ D S TV D GRG+PT +H E GI EVI+T LHAGGKF +K+Y+ SGG Sbjct: 60 YGKEINVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS+LK+R+ R+G YE F N G L G + GT +TF P Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS +NY+T+Q R+RE +FL V+ +L D+R PE + Y+ GI++FVSYL+ Sbjct: 179 PTIFSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNE 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K M G ++ I ++ + ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 238 D-KDTMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV Sbjct: 297 AFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVV 356 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415 +S V + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 357 DSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI Sbjct: 417 PAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +Y Sbjct: 477 TMIHTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVY 535 Query: 536 IIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + +G ++Y +E L + + ++ F + + + Sbjct: 536 IALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTM 595 Query: 592 D 592 + Sbjct: 596 N 596 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 561 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 620 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 621 MGDKVAPRRKWIDEN 635 >gi|325956844|ref|YP_004292256.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC] gi|325333409|gb|ADZ07317.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus 30SC] Length = 648 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 264/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F N G L G + TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE SFL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESSFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ A +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L + ++ F + ++ + +D ++ Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 143 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K KI L + +GR G S+ Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|116618459|ref|YP_818830.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097306|gb|ABJ62457.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 687 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 265/666 (39%), Positives = 378/666 (56%), Gaps = 18/666 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY + I Sbjct: 3 EKNHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGYGNEIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGLHGVG Sbjct: 62 VTIHDNNAITVQDFGRGMPIGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS L + I REG+ ++ F+N G L G TGT VTF P + IFS Sbjct: 121 SVVNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSA 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + +D L RLRE SFL S V+ +L D+R R Y+ G+EAFV +L+ K+ + Sbjct: 181 TVYKFDILAERLRESSFLMSGVKFTLTDERVDPVRVEEYHYEKGLEAFVGFLNEDKETIG 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +++I +D+A ++NDGY E +L F NN+ +DGGTH G R+A T+ Y Sbjct: 241 P-VMTFEGEQESIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYA 299 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 K K +++ G D REG ++V+S+++P+ +F QTK+KL + E R +V+S VN+ Sbjct: 300 RKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDSVVNE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLADCSER 420 L +L E+ + +++K L A R+AARRA T + L GKLA + Sbjct: 360 TLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGKLAPAQSK 419 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI TLI A Sbjct: 420 NADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYA 479 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + ++KIIIMTDAD DGAHI+TLLLTFF++ M LI G +YI PP Sbjct: 480 IGGGVG-TDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPP 538 Query: 541 LYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 LY + + Q+ + LE E+ F + + + Sbjct: 539 LYRVKYSSKKIEDQFAWTNDELESITSQSDARYELTRFKGLGE------MNAPLLWETTM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 D + + + + + + L+ + Sbjct: 593 DPESRTLIRVKIDDAVLAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGSILDTVDGDDT 652 Query: 658 NNSDIL 663 +SD+ Sbjct: 653 KSSDVF 658 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSLLDTIFSIGRKGISM 736 + +F KY R KI L++I S + Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYSSKKIEDQFAWTNDELESITSQSDARYEL 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA LWETT++P++R+L+RVKI DA A+ + LMGD+V+PRRE+I+ N Sbjct: 574 TRFKGLGEMNAPLLWETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVDPRREWIEAN 632 >gi|259046724|ref|ZP_05737125.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC 49175] gi|259036620|gb|EEW37875.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC 49175] Length = 686 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 259/597 (43%), Positives = 367/597 (61%), Gaps = 16/597 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH+ YE++DNA+DE+L GY Sbjct: 1 MSK--VTNQYNDDAIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLAYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I VT++ D S +V DNGRG+PT H GI +VI T LHAGGKF Q YK SGGL Sbjct: 58 ATKIEVTIHKDQSLSVKDNGRGMPTGKHAS-GIPTIQVIFTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL + + R+G +Y+ SF N G + ++ +GT VTFLPS Sbjct: 117 HGVGASVVNALSDWLTVEVLRDGTLYKQSFKNGGEPVGTVKKEKTSRRGSGTTVTFLPSD 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 FS +++Y+TL RLRE +FL + I L D+R+ E T Y+ GI F+ YL+ Sbjct: 177 KTFSTTNWSYETLAERLRESAFLLKGLTIVLTDERTGES--ETFHYEEGIRDFIQYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + D + + A ++NDGY E +L F NN+ KDGGTH G++SALT+ Sbjct: 235 KDTLSPVVD-FDSTVDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMKSALTKA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG T+++S+++P+ +F QTK+KL + R +V+ Sbjct: 294 FNEYARKVGLLKEKDKNLEGSDVREGLTAIISLRIPEEILQFEGQTKDKLGTPAARGIVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + +++ L +L E+ A+ +++K + A R+A+R+AR+ +KG L GKL Sbjct: 354 NTISEQLGFFLTENGEIAQELIRKAIKAREAREASRKAREESRNGKKGKKKETLLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI Sbjct: 414 PAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F I Y KI+IMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIYTIGAGVGSD-FKIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 532 Query: 536 IIKPPLYGITRGKSLQYVKDE---ESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + PPLY I++G + V + E + + G ++ + L + Sbjct: 533 LALPPLYKISKGTGKKQVIEYAWTEKELEEKTKLVGKGYLLQRYKGLGEMNADQLWD 589 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 102/263 (38%), Gaps = 3/263 (1%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I + + + + + + E + +E L SKN +N + Sbjct: 370 IAQELIRKAIKAREAREASRKAREESRNGKKGKKKETLLSGKLTPAQSKNPKKNELYLVE 429 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 K + V N E ++ ++ + I + Sbjct: 430 GDSAGGSAKQGRDRKFQAILPLRGKVINTEKASISDILKNEEINTIIYTIGAGVGSDFKI 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 N D +V + F + I + ++ + + K + Sbjct: 490 EDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYLALPPLYKISKGTGKKQ 549 Query: 716 I---TGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ 772 + L+ + KG +QRYKGLGEMNA QLW+TT+NPDTR+L+RV I D +Q Sbjct: 550 VIEYAWTEKELEEKTKLVGKGYLLQRYKGLGEMNADQLWDTTMNPDTRTLIRVVIDDKAQ 609 Query: 773 ADDLFSRLMGDEVEPRREFIQEN 795 A+ S LMG++VEPRR++I+ + Sbjct: 610 AERRVSTLMGNKVEPRRKWIERH 632 >gi|315038433|ref|YP_004032001.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112] gi|312276566|gb|ADQ59206.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1112] Length = 648 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 263/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F N G L G + TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ A +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L + ++ F + ++ + +D ++ Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 143 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K KI L + +GR G S+ Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|229829024|ref|ZP_04455093.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM 14600] gi|229792187|gb|EEP28301.1| hypothetical protein GCWU000342_01109 [Shuttleworthia satelles DSM 14600] Length = 640 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 247/621 (39%), Positives = 353/621 (56%), Gaps = 14/621 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + SYD SI +L+GLDAV+ RP MYIG T GL+H+IYE++DN++DE L G D I Sbjct: 3 KKKSYDESSIHVLEGLDAVRMRPGMYIGSTS-TKGLNHLIYEIVDNSVDEHLAGDCDTIH 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V+LN+DGSCTV D+GRGIP +H + G+SAA ++ + LHAGGKF+ ++YK SGGLHGVG Sbjct: 62 VSLNLDGSCTVEDDGRGIPVGMHAK-GVSAARLVFSTLHAGGKFDNEAYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSD 180 SVVNALSS++ + I+R+G I+ + G L V G +TGT++TFLP Sbjct: 121 SVVNALSSYMDIEIRRDGEIHHDHYAMGKPTEKLVNGLLPVIGKTK-ETGTKITFLPDPQ 179 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF F+ ++ RL E ++LN + I D R + K GI FV L++ Sbjct: 180 IFEKTRFSEKDVKSRLHETAYLNPRLTIIYDDLRQETAEHLVFHEKEGIRGFVRELNKKA 239 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + + I +G + I ++ A ++ + +HEN+L F NNI +GG H++G ++ T I Sbjct: 240 E-GLTDVIYYKGEFEGIQVEAAFQYVNEFHENILGFCNNIYNAEGGEHITGFKTQFTTVI 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 SY + K + G D R G T+V+SIK PDPRF QTK KL + + Sbjct: 299 NSYARELGILKDKDANFTGTDVRNGMTAVISIKHPDPRFEGQTKTKLDNKDASKATAKVT 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 D + + + + K ++ A+ +R R + K GKLA+C R Sbjct: 359 GDEIVLYFDRNLETLKTVISCAEKAAKIRRTEERTKTNLLTKQKFSFD-QNGKLANCESR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D K E+F+VEGDSAGGSAK R+R QAI+P+RGKILNVE+A DK+L++ EI T+I A Sbjct: 418 DASKCEIFIVEGDSAGGSAKMARNRLYQAIMPIRGKILNVEKASIDKVLANAEIKTMINA 477 Query: 481 LGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 G G + + FDI KLRY KII+MTDADVDGAHI TLLLT F+R MP LI+ G +Y+ Sbjct: 478 FGCGFSEGFGNDFDIKKLRYDKIIVMTDADVDGAHIDTLLLTLFYRFMPELIYEGHVYLA 537 Query: 538 KPPLYGIT-RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +Y+ D+ +LE Y Q+ S ++ + + + ++ + Sbjct: 538 MPPLYKAMPAKGEEEYLYDDAALEKYRKRQTGSFTLQRYKGLGEMDAAQLYETTMNPKTR 597 Query: 597 IDKLIKDFYPNHDKTFIEQAV 617 + + E + Sbjct: 598 RLRRVGIEDGRMASDVTEMLM 618 Score = 130 bits (327), Expect = 9e-28, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 52/69 (75%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++QRYKGLGEM+A+QL+ETT+NP TR L RV I D A D+ LMG+EV PRR+FI E Sbjct: 572 TLQRYKGLGEMDAAQLYETTMNPKTRRLRRVGIEDGRMASDVTEMLMGNEVGPRRDFIYE 631 Query: 795 NSLPSALDI 803 N+ + LD+ Sbjct: 632 NANDADLDV 640 >gi|227431865|ref|ZP_03913889.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352407|gb|EEJ42609.1| DNA topoisomerase IV subunit B [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 687 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 265/666 (39%), Positives = 378/666 (56%), Gaps = 18/666 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY + I Sbjct: 3 EKNHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGYGNEIR 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGLHGVG Sbjct: 62 VTIHDNNAITVQDFGRGMPIGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS L + I REG+ ++ F+N G L G TGT VTF P + IFS Sbjct: 121 SVVNALSESLTVTIVREGHKWQEEFVNGGNPVGTLRDLGKTKEPTGTTVTFKPDATIFSA 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + +D L RLRE SFL S V+ +L D+R R Y+ G+EAFV +L+ K+ + Sbjct: 181 TVYKFDILAERLRESSFLMSGVKFTLTDERVDPVRVEEYHYEKGLEAFVGFLNEDKETIG 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +++I +D+A ++NDGY E +L F NN+ +DGGTH G R+A T+ Y Sbjct: 241 P-VMTFEGEQESIVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKAFNEYA 299 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 K K +++ G D REG ++V+S+++P+ +F QTK+KL + E R +V+S VN+ Sbjct: 300 RKVNLLKDKDKNLEGTDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVDSVVNE 359 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLADCSER 420 L +L E+ + +++K L A R+AARRA T + L GKLA + Sbjct: 360 TLGRFLMENGDFGQNLIRKALRAREAREAARRARDESRTGKTKGAKDRLLSGKLAPAQSK 419 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI TLI A Sbjct: 420 NADKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIYA 479 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + ++KIIIMTDAD DGAHI+TLLLTFF++ M LI G +YI PP Sbjct: 480 IGGGVG-TDFKVEDASFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVYIALPP 538 Query: 541 LYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 LY + + Q+ + LE E+ F + + + Sbjct: 539 LYRVKYSSKKIEDQFAWTNDELESITSQSDARYELTRFKGLGE------MNAPLLWETTM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 D + + + + + + L+ + Sbjct: 593 DPESRTLIRIKIDDAVLAEKRVTTLMGDKVDPRREWIEANVHFTLDEAGSILDTVDGDDT 652 Query: 658 NNSDIL 663 +SD+ Sbjct: 653 KSSDVF 658 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG----PCSLLDTIFSIGRKGISM 736 + +F KY R KI L++I S + Sbjct: 514 LLLTFFYKYMRPLIEAGRVYIALPPLYRVKYSSKKIEDQFAWTNDELESITSQSDARYEL 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA LWETT++P++R+L+R+KI DA A+ + LMGD+V+PRRE+I+ N Sbjct: 574 TRFKGLGEMNAPLLWETTMDPESRTLIRIKIDDAVLAEKRVTTLMGDKVDPRREWIEAN 632 >gi|297193291|ref|ZP_06910689.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486] gi|297151724|gb|EDY62302.2| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486] Length = 688 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 278/647 (42%), Positives = 390/647 (60%), Gaps = 26/647 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V Sbjct: 30 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP +H E A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 89 TILADGGVRVIDNGRGIPVGIHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS L + I+ +G + + +G+ PL A +TGT VTF DIF + Sbjct: 149 VVNALSYKLAVEIRTDGYRWTQEYKSGVPTAPLEQ-HEATTETGTSVTFWADGDIFETTE 207 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR------------------SPEPREITMFYKGG 228 ++++TL R +E++FLN + ++L D+R R + Y+GG Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATAGAETGQEPEDLEQPARTVKYHYEGG 267 Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 I FV Y R + + + I I+ +S+++AM+WN Y E V F N I +G Sbjct: 268 IVDFVKYLNSRKGELIHPTVIDIEAEDRERMLSVEIAMQWNSQYTEGVYSFANTIHTHEG 327 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH G RSALT + Y + ++ ++ G+D REG T+++S+K+ +P+F QTK Sbjct: 328 GTHEEGFRSALTGLVNRYAREKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKT 387 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E ++ V+ V++ L+ W + +P EA I++K + A R AAR+ARDLTRRKG+L Sbjct: 388 KLGNTEAKTFVQKVVHETLTDWFDRNPNEAADIIRKGIQAQTARVAARKARDLTRRKGLL 447 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 + ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR Sbjct: 448 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARI 507 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 508 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 566 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 L+ G +++ +PPLY I G+ + D L++ + DS Sbjct: 567 RPLVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVDLGKRSGKRIKEDSIQRFKG- 625 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L+I + +D T + A +F+ +++ Sbjct: 626 -LGEMNAEELRITTMDQDHRVLGQVTLDDAAQADDLFSVLMGEDVEA 671 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGRKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G++ S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 602 DALVDLGKRSGKRIKEDSIQRFKGLGEMNAEELRITTMDQDHRVLGQVTLDDAAQADDLF 661 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 662 SVLMGEDVEARRSFIQRNAKDVRFLDI 688 >gi|259500773|ref|ZP_05743675.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners DSM 13335] gi|302190776|ref|ZP_07267030.1| DNA gyrase, B subunit [Lactobacillus iners AB-1] gi|309804063|ref|ZP_07698144.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d] gi|309805911|ref|ZP_07699943.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b] gi|309807813|ref|ZP_07701745.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a] gi|312871188|ref|ZP_07731286.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a] gi|312873296|ref|ZP_07733351.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d] gi|315654135|ref|ZP_07907051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners ATCC 55195] gi|325912201|ref|ZP_08174598.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D] gi|325913628|ref|ZP_08175990.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B] gi|329919730|ref|ZP_08276681.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G] gi|259167467|gb|EEW51962.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners DSM 13335] gi|308163831|gb|EFO66097.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d] gi|308167687|gb|EFO69834.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b] gi|308168915|gb|EFO71001.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a] gi|311091176|gb|EFQ49565.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d] gi|311093202|gb|EFQ51548.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a] gi|315488831|gb|EFU78477.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus iners ATCC 55195] gi|325475860|gb|EGC79029.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D] gi|325476987|gb|EGC80137.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B] gi|328937077|gb|EGG33505.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G] Length = 653 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG+T GLHH+++E++DN+IDE L G+A Sbjct: 15 EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y + F +G ++ + G GT V F P DIF Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR + ++GGI+ +VS+L++ ++ Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + P+ ++G D I+++ ++++ GY +L F NNI +GG H SG ++ALTR + Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKTALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K + ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D S +L E+P + IV+K A+ R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI T+ TAL Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y+ +E L DYL S + I G + L Sbjct: 553 YQVRQGKVIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV DA A++ F LMG+EV PRREFI++N Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AKYVENLD 652 >gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp. lyrata] gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp. lyrata] Length = 657 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 267/600 (44%), Positives = 370/600 (61%), Gaps = 15/600 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 6 ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 I V L+ D S ++SDNGRGIPTDLH G SA E ++T LHAGGKF KS Y VSGGL Sbjct: 65 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSALETVLTVLHAGGKFGGKSSGYSVSGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ ++R+G ++ + G L + GT + F P Sbjct: 125 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 184 Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPR--EITMFYKGGIEA 231 + + F+++T+ R+REL+FLN V ISL + R FY GG+ Sbjct: 185 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDLYSEYFYAGGLTE 244 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +VS+L+ KKPL + + ++D++++W D Y + +L + N+I DGGTH+ Sbjct: 245 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 303 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G++++LTR + S +K K+ S+ G+ REG T ++S+K+P+P F QTK +L + Sbjct: 304 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 363 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+ V + L+ +LE HP + I+ K L+A AA+RAR+L R K VL +SL Sbjct: 364 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 423 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS DP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M Sbjct: 424 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 483 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI LI LG G+ + F+ LRYHKIII+TDADVDGAHIRTLLLTFFFR +L Sbjct: 484 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 543 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G +Y+ PPL+ + RGK Y D+ +L+ + + G + L Sbjct: 544 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPANASYNIQRFKGLGEMMPAQLWE 603 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 119/340 (35%), Gaps = 38/340 (11%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 K+I D + G H+R L ++P+ G P + I +Y+ + Sbjct: 321 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 380 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594 L ++ +S+ + + + +L + Sbjct: 381 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 440 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649 ++ + QA++ + + + + K N I K Sbjct: 441 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 500 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E ++ I++ V + F F + + I + + Sbjct: 501 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 559 Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + L I + ++QR+KGLGEM +QLWETT+NPDTR L ++ + Sbjct: 560 GKQAHYCYD-DAALKKITASFPANASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 618 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803 DA++ + +FS LMG V+ R+E I+ + L LDI Sbjct: 619 EDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 657 >gi|312872743|ref|ZP_07732808.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091785|gb|EFQ50164.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1] Length = 653 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG+T GLHH+++E++DN+IDE L G+A Sbjct: 15 EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y + F +G ++ + G GT V F P DIF Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR + ++GGI+ +VS+L++ ++ Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + P+ ++G D I+++ ++++ GY +L F NNI +GG H SG ++ALTR + Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKAALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K + ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D S +L E+P + IV+K A+ R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI T+ TAL Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y+ +E L DYL S + I G + L Sbjct: 553 YQVRQGKIIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV DA A++ F LMG+EV PRREFI++N Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AKYVENLD 652 >gi|312874887|ref|ZP_07734906.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b] gi|311089632|gb|EFQ48057.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b] Length = 653 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 284/589 (48%), Positives = 395/589 (67%), Gaps = 5/589 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + Y+A IQ+L GL+AV+KRP MYIG+T GLHH+++E++DN+IDE L G+A Sbjct: 15 EKRAEKYNASQIQVLGGLEAVRKRPGMYIGNTS-IQGLHHLVWEIIDNSIDEKLAGFATK 73 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I +T+N DGS TV D+GRGIP D+ K+ G SA E + T LHAGGKF YKVSGGLHGV Sbjct: 74 IEITVNEDGSVTVEDDGRGIPVDIQKKTGRSALETVFTVLHAGGKFGGGGYKVSGGLHGV 133 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-NDTGTEVTFLPSSDIF 182 G SVVNALS+ L + + R+G Y + F +G ++ + G GT V F P DIF Sbjct: 134 GASVVNALSTKLNVIVMRDGKKYCIDFNHGRVEQEVHEVGEVPLTQHGTIVRFYPDPDIF 193 Query: 183 SVQDFNYD-TLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 + D L++R+REL+FLN ++++ DKR + ++GGI+ +VS+L++ ++ Sbjct: 194 TETTVFDDRILKNRIRELAFLNKGLKLTFTDKRKNTAEKDIYHFEGGIKEYVSFLNQKEQ 253 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 L + P+ ++G D I+++ ++++ GY +L F NNI +GG H SG ++ALTR + Sbjct: 254 VLFEPPVYVEGDYDGINVEASLQYITGYKSTLLTFANNIHTYEGGMHESGFKTALTRVVN 313 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ K + ++ G+D REG T+V+SIK P+P+F QTK KL +S+ R+ V+ + Sbjct: 314 DYARKAKILKDNDDNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFS 373 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 D S +L E+P + IV+K A+ R AA+RAR++TR+K L+IA+LPGKLAD + D Sbjct: 374 DTFSKFLLENPQVGRKIVEKGQLAARARIAAKRAREVTRKKSGLEIANLPGKLADNTSND 433 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PK SELF+VEGDSAGGSAKQGRSR QAILP+RGKILNVE+A D++L++QEI T+ TAL Sbjct: 434 PKISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANQEIRTIFTAL 493 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTG G D FDINK RYHK+IIMTDADVDGAHIRTLLLT F+R M +I G++YI +PPL Sbjct: 494 GTGFGAD-FDINKARYHKLIIMTDADVDGAHIRTLLLTLFYRYMKPMIKAGYVYIARPPL 552 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 Y + +GK ++Y+ +E L DYL S + I G + L Sbjct: 553 YQVRQGKIIKYLDTDEELHDYLGTLQPSPKPIVQRYKGLGEMDPEQLWE 601 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R L RV DA A++ F LMG+EV PRREFI++N Sbjct: 585 VQRYKGLGEMDPEQLWETTMNPENRRLDRVDPEDAEDAEEAFEMLMGNEVGPRREFIEQN 644 Query: 796 SLPS-ALD 802 + LD Sbjct: 645 AKYVENLD 652 >gi|327183630|gb|AEA32077.1| DNA topoisomerase IV subunit B [Lactobacillus amylovorus GRL 1118] Length = 648 Score = 542 bits (1396), Expect = e-151, Method: Composition-based stats. Identities = 264/605 (43%), Positives = 372/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F N G L G + TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKGYEEEFKNGGHPVGTLKCVGKTKDKTGTTITFKPDQTIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D I I+ A +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGIEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L + ++ F + ++ + +D ++ Sbjct: 538 YRLQKGRGKKSKIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K KI L + +GR G S+ Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKIQYAWTDEELAEDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|313897377|ref|ZP_07830920.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2] gi|312957747|gb|EFR39372.1| DNA topoisomerase IV, B subunit [Clostridium sp. HGF2] Length = 643 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 249/593 (41%), Positives = 360/593 (60%), Gaps = 11/593 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GLDAV+KRP MYIG TD GLHH+++E++DN+IDE+L G+ D I Sbjct: 1 MAENAYDGSSIQILDGLDAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEALNGHGDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123 +T+ D V D GRG+P D+H G+ +VI T LHAGGKF+ + YK SGGLHGV Sbjct: 60 RITIEKDNVICVEDEGRGMPVDMHAS-GVPTVQVIYTVLHAGGKFSTEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS W+++ + R+G IY MSF + G + L V G N TG++V F +F Sbjct: 119 GASVVNALSEWVEVTVHRDGKIYRMSFSDGGREVSKLEVIGKT-NKTGSKVRFKADKTMF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S +++ + R +E +FL +++ + D+R + RE Y+ G+ AF+ YL K+ Sbjct: 178 STTKYSFHQIAERAQEDAFLLEGLKLVVRDEREGKEREEVYHYEQGLVAFMEYLHEDKQV 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + G + I +D A ++ D Y EN+ F N + KDGGTH +G ++A T+ Sbjct: 238 FHKPVA-FSGMSNEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTKVFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K+ ++ G D REG T +LS+ +P+ +F QTK KL ++E ++ V+S V Sbjct: 297 YARKNGLLKEKDKNFEGSDVREGLTIILSLGVPENLLQFEGQTKGKLGTAEAKAAVDSIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCS 418 ++ LS +LEE+ A ++KK+ AS R+AAR+AR+ R + L GKLA Sbjct: 357 SEKLSFFLEENKELAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILSGKLASAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D +K EL+LVEGDSAGGSAKQGR + QAILPLRGK+LN E+A + ++E+ T+I Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 ALG G+G + F YHK+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQGMVYIAL 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 PPLY + +GK +QY +E L++ ++ + + + + Sbjct: 536 PPLYKLQKGKEIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTM 588 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 103/261 (39%), Gaps = 3/261 (1%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + + + R + + + + E L SK+ + + Sbjct: 370 LAITLIKKMQRASTAREAARKAREDARKGKTRGKTEKILSGKLASAQSKDARKKELYLVE 429 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 K + V N E N+ +L ++ + ++H Sbjct: 430 GDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTIIHALGAGVGANFHA 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKI 714 +N ++ + + +F +Y R + + L L + G +I Sbjct: 490 EDSNYHKVIIMTDADTDGAHI--QILLLTFFYRYMRELIEQGMVYIALPPLYKLQKGKEI 547 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + LD + KG S+QRYKGLGEMNA QLW+TT+ P+TR+L++V I DA A+ Sbjct: 548 QYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTMCPETRTLIQVTIDDAVVAE 607 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ RR++I+EN Sbjct: 608 KRVSVLMGDKANLRRDWIEEN 628 >gi|30088962|gb|AAP13529.1| DNA gyrase subunit B [Acholeplasma pleciae] Length = 536 Score = 541 bits (1395), Expect = e-151, Method: Composition-based stats. Identities = 264/537 (49%), Positives = 360/537 (67%), Gaps = 5/537 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 GE GLHH+++E++DN+IDE+L GYAD IT+ + V+DNGRGIP D H + G A Sbjct: 3 GERGLHHLVWEIVDNSIDEALGGYADEITIEILKGEIIRVTDNGRGIPVDTHPKTGRPAV 62 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 E I+T LHAGGKF++ SYKVSGGLHGVG SVVN LS W + I ++G IYE + GI Sbjct: 63 ETILTTLHAGGKFDKGSYKVSGGLHGVGASVVNGLSEWFVVEIHKDGVIYEQKYERGIPA 122 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRS 215 L G + +GT ++F IF +NY+TL+ R+++L+FLN ++++LID R Sbjct: 123 YDLKTLG-TTDRSGTVISFQSDPLIFKETVIYNYETLRTRIQQLAFLNKGLKLNLIDDRF 181 Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 E + + Y+GGI +V +L++ K + I I+ +D+I+I+LA+++ D Y N+ Sbjct: 182 EEVKTESFHYEGGIIEYVKFLNQAKTRIHPDIIYIEKEQDDITIELALQFVDSYSPNLHS 241 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 FTNNI +GG H G + ALTR I+ Y ++ S+ G+D REG T+++S+K P Sbjct: 242 FTNNISTTEGGMHEDGFKMALTRVISKYADELKMK--KDDSISGEDTREGLTAIISVKHP 299 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 +P+F QTK KL + EVR++ ++ L +L E+P +AK IV+KVL A+ R AAR+A Sbjct: 300 EPQFEGQTKTKLGNPEVRAITSQITSEALERFLMENPAQAKAIVEKVLLATRARVAARKA 359 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 +DLTRRK LD KLADC +DP+KSE+++VEGDSAGGSAKQGR E QAI+PLRG Sbjct: 360 KDLTRRKSPLDALGFASKLADCRSKDPEKSEIYIVEGDSAGGSAKQGRDSEFQAIMPLRG 419 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 K+LNVE+AR DKMLS++EI LI A+GTGI D FDI K RYHKI+IMTDADVDGAHIRT Sbjct: 420 KVLNVEKARLDKMLSNKEIVNLIQAMGTGI-SDEFDITKARYHKIVIMTDADVDGAHIRT 478 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI 572 LLLTF FR M LI G++Y +PPLY ++ G++ +Y E+ L L I Sbjct: 479 LLLTFLFRHMRPLIDAGYVYAAQPPLYKVSWGRNSEYAYTEQELNIILKKIETKPNI 535 >gi|325106678|ref|YP_004267746.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305] gi|324966946|gb|ADY57724.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM 5305] Length = 639 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 242/644 (37%), Positives = 361/644 (56%), Gaps = 25/644 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Y A I++L+GL+AV++RPSMYIG D GLHH+++EV+DN++DE L G+ Sbjct: 1 MATASPTK-YSASDIEVLEGLEAVRRRPSMYIGGVD-VRGLHHLLWEVVDNSVDEFLAGH 58 Query: 61 ADIITVTLNMDGS-CTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 AD I +TL+ DGS TV+DNGRGIP D H + SA EVI+T LHAGGKF+ K+Y SGG Sbjct: 59 ADTIKITLHKDGSSLTVADNGRGIPVDKHPKFKKSALEVILTTLHAGGKFSDKNYARSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS + + R+G+ + + G P+ GT + F P Sbjct: 119 LHGVGSSVVNALSEEMVATVHRDGHEWMQRYKRGKATTPVKKVKPFK-GHGTVIFFRPDE 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 +IF F+ DT++ L ++ ++++ ++I D+ E E+ D Sbjct: 178 EIFRKTTFSSDTIRQHLEDICYIHAGLKIRYTDEVKNETFELHQPDGIKAYVEKLTRDEK 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KKP+ ++ + +I + +RW + E++ + N I GGTHL+G+RS + + Sbjct: 238 KKPVHETIFTAEKDDGDIKTEFVLRWTEATDEHIRSYVNGIRTHAGGTHLNGIRSGIAKA 297 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + +Y++ K ++ DD REG V+S+ + DP F QTKEKL + EV + VE Sbjct: 298 VKNYMDVH-DIKPKGVTISADDIREGCLGVVSVFLGDPMFQGQTKEKLNNPEVTAAVEGL 356 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCS 418 + GL WL + A I+ +++ A+ R A+R A +RK +LPGKL DC Sbjct: 357 IRPGLETWLNNNSSIADAILGRIILAARARQASRDAVASIKRKTPGGKRTNLPGKLLDCR 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +P ++ELF+VEGDSAGG+A GR QAILPLRGK+LN E + +K +++QE+ L+ Sbjct: 417 SNNPDETELFIVEGDSAGGTAASGRDSRIQAILPLRGKVLNTESIKINKAMANQELSDLV 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 LGTGIG SFD +KLRY +II++ DAD DG HI TLLLTFFFR MP LI + L+I + Sbjct: 477 ETLGTGIG-PSFDAHKLRYGRIILLMDADADGYHISTLLLTFFFRHMPDLIRSEKLFIGQ 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK------------------G 580 PPLY IT G QY D+ E+ L + + ++E+ Sbjct: 536 PPLYRITYGNQSQYALDDLHKEEILASIPANRKVEISRFKGLGEMNASQLRETTLDPTQR 595 Query: 581 VISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 V+ K ++ N +D +L+ + + ++ ++ + Sbjct: 596 VLLKVEIENQVDADQTFHQLLGKDARERYRIIMSESALADDLDV 639 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 8/90 (8%) Query: 722 LLDTIFSI-------GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 LD + + + + R+KGLGEMNASQL ETTL+P R LL+V+I + AD Sbjct: 550 ALDDLHKEEILASIPANRKVEISRFKGLGEMNASQLRETTLDPTQRVLLKVEIENQVDAD 609 Query: 775 DLFSRLMGDEVEPRREFIQ-ENSLPSALDI 803 F +L+G + R I E++L LD+ Sbjct: 610 QTFHQLLGKDARERYRIIMSESALADDLDV 639 >gi|268319492|ref|YP_003293148.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785] gi|262397867|emb|CAX66881.1| DNA topoisomerase IV subunit B [Lactobacillus johnsonii FI9785] Length = 661 Score = 541 bits (1394), Expect = e-151, Method: Composition-based stats. Identities = 270/597 (45%), Positives = 371/597 (62%), Gaps = 13/597 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N SSYD SIQIL GL+AV+KRP MYIG TD GL+H+IYE++DN++DE++ GY Sbjct: 14 NKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAGYGKE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D GRG+PT +H E GI EVI+T LHAGGKF +K+Y+ SGGLHGV Sbjct: 73 INVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALSS+LK+R+ R+G YE F N G L G + GT +TF P IF Sbjct: 132 GSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S +NY+T+Q R+RE +FL V+ +L D+R PE + Y+ GI++FVSYL+ K Sbjct: 192 STTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-KD 249 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 M G ++ I ++ + ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 250 TMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFND 309 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+S V Sbjct: 310 YAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIV 369 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419 + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 370 YEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQS 429 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 430 RNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIH 489 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI P Sbjct: 490 TIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALP 548 Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY + +G ++Y +E L + + ++ F + + ++ Sbjct: 549 PLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 630 MGDKVAPRRKWIDEN 644 >gi|315653530|ref|ZP_07906450.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC 55195] gi|315488892|gb|EFU78534.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners ATCC 55195] Length = 647 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY Sbjct: 1 MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGL Sbjct: 58 GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERGPQRKDEFYYDDG--IKSFVSYLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+ Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416 + + + LS +L E+ A+ +V+K A R+AA++ARD +R + GKL Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533 Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G + I L + G KG S+QR Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632 >gi|309803989|ref|ZP_07698071.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 11V1-d] gi|309805612|ref|ZP_07699654.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 09V1-c] gi|325912134|ref|ZP_08174532.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D] gi|308163908|gb|EFO66173.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 11V1-d] gi|308165050|gb|EFO67291.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LactinV 09V1-c] gi|325476084|gb|EGC79252.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 143-D] Length = 647 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY Sbjct: 1 MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGL Sbjct: 58 GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+ Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416 + + + LS +L E+ A+ +V+K A R+AA++ARD +R + GKL Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533 Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G + I L + G KG S+QR Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632 >gi|295693010|ref|YP_003601620.1| DNA topoisomerase iv, b subunit [Lactobacillus crispatus ST1] gi|295031116|emb|CBL50595.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus ST1] Length = 648 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 261/605 (43%), Positives = 370/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F + G L G TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FV YL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I +G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L D ++ F + ++ +D ++ Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K ++ L D +GR G S+ Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|256850406|ref|ZP_05555834.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US] gi|256712803|gb|EEU27796.1| DNA topoisomerase IV subunitB [Lactobacillus crispatus MV-1A-US] Length = 648 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 259/605 (42%), Positives = 369/605 (60%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VIIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F + G L G TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FV YL+ K + Sbjct: 181 TKYKYETIQERIREYAFLLKGVKFFLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL ++ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSQN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I +G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L D ++ F + ++ +D ++ Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K ++ L D +GR G S+ Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|309775455|ref|ZP_07670458.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916844|gb|EFP62581.1| DNA topoisomerase IV, B subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 643 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 248/593 (41%), Positives = 359/593 (60%), Gaps = 11/593 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GLDAV+KRP MYIG TD GLHH+++E++DN+IDE+L G+ D I Sbjct: 1 MAENAYDGSSIQILDGLDAVRKRPGMYIGSTDS-RGLHHLVWEIVDNSIDEALNGHGDTI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGGLHGV 123 +T+ D V D GRG+P D+H G+ A +VI T LHAGGKF+ + YK SGGLHGV Sbjct: 60 RITIEKDNVICVEDEGRGMPVDMHAS-GVPAVQVIYTVLHAGGKFSTEGGYKTSGGLHGV 118 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALS W+++ + R G+IY M+F + G + L V G TG++V F +F Sbjct: 119 GASVVNALSEWVEVTVYRNGSIYRMNFSDGGSKVSKLEVIGKTS-KTGSKVRFKADKTMF 177 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S +++ + R +E +FL +++ + D+R + RE Y+ G+ AF+ YL K+ Sbjct: 178 STTKYSFHQIAERAQEDAFLLEGLKLVVRDEREGKEREEVYHYEQGLVAFMEYLHEDKQV 237 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + G + I +D A ++ D Y EN+ F N + KDGGTH +G ++A T+ Sbjct: 238 FHKPVA-FSGMANEIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTKVFNE 296 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y K+ K ++ G D REG T +LS+ +P+ +F QTK KL ++E ++ V+S V Sbjct: 297 YARKNGLLKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTAEAKAAVDSIV 356 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKLADCS 418 ++ LS +LEE+ A ++KK+ AS R+AAR+AR+ R+ L GKLA Sbjct: 357 SEKLSYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILSGKLASAQ 416 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D +K EL+LVEGDSAGGSAKQGR + QAILPLRGK+LN E+A + ++E+ T+I Sbjct: 417 SKDARKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTII 476 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 ALG G+G + F YHK+IIMTDAD DGAHI+ LLLTFF+R M LI G +YI Sbjct: 477 HALGAGVGAN-FHAEDSNYHKVIIMTDADTDGAHIQILLLTFFYRYMRELIEQGMVYIAL 535 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 PPLY + +GK +QY +E L++ ++ + + + + Sbjct: 536 PPLYKLQKGKDIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTM 588 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 3/270 (1%) Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 S + + + R + + + + E L SK+ Sbjct: 361 SYFLEENKELAITLIKKMQRASTAREAARKAREDARKGKSKGKTEKILSGKLASAQSKDA 420 Query: 587 LRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIA 646 + + K + V N E N+ +L ++ + Sbjct: 421 RKKELYLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKASITNIEKNEELNTIIHALG 480 Query: 647 EKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTIL 705 ++H +N ++ + + +F +Y R + + L L Sbjct: 481 AGVGANFHAEDSNYHKVIIMTDADTDGAHI--QILLLTFFYRYMRELIEQGMVYIALPPL 538 Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRV 765 + G I+ LD + KG S+QRYKGLGEMNA QLW+TT+ P+TR+L++V Sbjct: 539 YKLQKGKDIQYAWTDEELDELRKTFPKGFSLQRYKGLGEMNADQLWDTTMCPETRTLIQV 598 Query: 766 KITDASQADDLFSRLMGDEVEPRREFIQEN 795 I DA A+ S LMGD+ RR +I+EN Sbjct: 599 TIDDAVVAEKRVSVLMGDKANLRRNWIEEN 628 >gi|312871805|ref|ZP_07731893.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a] gi|311092747|gb|EFQ51103.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 3008A-a] Length = 647 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 256/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ G+ Sbjct: 1 MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGL Sbjct: 58 GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+ Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416 + + + LS +L E+ A+ +V+K A R+AA++ARD +R + GKL Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533 Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G + I L + G KG S+QR Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632 >gi|227889992|ref|ZP_04007797.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|227849436|gb|EEJ59522.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] Length = 661 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 270/597 (45%), Positives = 371/597 (62%), Gaps = 13/597 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N SSYD SIQIL GL+AV+KRP MYIG TD GL+H+IYE++DN++DE++ GY Sbjct: 14 NKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNHLIYEIVDNSVDEAMAGYGKE 72 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV D GRG+PT +H E GI EVI+T LHAGGKF +K+Y+ SGGLHGV Sbjct: 73 INVTIHKDNSVTVQDFGRGMPTGMH-ESGIPTIEVILTVLHAGGKFTEKNYQTSGGLHGV 131 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 G SVVNALSS+LK+R+ R+G YE F N G L G + GT +TF P IF Sbjct: 132 GSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDPTIF 191 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 S +NY+T+Q R+RE +FL V+ +L D+R PE + Y+ GI++FVSYL+ K Sbjct: 192 STTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-KD 249 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 M G ++ I ++ + ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 250 TMGDVFYFSGKQNGIEVEFSGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKSFND 309 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFV 360 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+S V Sbjct: 310 YAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSIV 369 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSE 419 + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 370 YEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQS 429 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 430 RNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIH 489 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI P Sbjct: 490 TIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIALP 548 Query: 540 PLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PLY + +G ++Y +E L + + ++ F + + ++ Sbjct: 549 PLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605 Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 630 MGDKVAPRRKWIDEN 644 >gi|227878639|ref|ZP_03996556.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01] gi|256843237|ref|ZP_05548725.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN] gi|262046445|ref|ZP_06019407.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US] gi|293380597|ref|ZP_06626652.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1] gi|312977468|ref|ZP_07789216.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05] gi|227861759|gb|EEJ69361.1| DNA topoisomerase IV subunit B [Lactobacillus crispatus JV-V01] gi|256614657|gb|EEU19858.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 125-2-CHN] gi|260573316|gb|EEX29874.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus MV-3A-US] gi|290922844|gb|EFD99791.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus 214-1] gi|310895899|gb|EFQ44965.1| DNA topoisomerase IV, B subunit [Lactobacillus crispatus CTV-05] Length = 648 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 260/605 (42%), Positives = 369/605 (60%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 V ++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VIIHSDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F + G L G TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKDGGHPVGTLKCVGKTKEPTGTTITFKPDETIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FV YL+ K + Sbjct: 181 TKYKYETIQERIREYAFLLKGVKFFLTDEREPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I +G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEHGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L D ++ F + ++ +D ++ Sbjct: 538 YRLQKGRGKKTQVQYAWTDEELADDEKKMGRGYSLQRFKGLGEMNAEQLWATTMDPQSRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K ++ L D +GR G S+ Sbjct: 514 LTFFYRYMRPMIEHGKVYIALPPLYRLQKGRGKKTQVQYAWTDEELADDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW TT++P +R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWATTMDPQSRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|73916452|gb|AAZ93094.1| topoisomerase IV subunit B [Streptococcus pneumoniae] Length = 536 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 266/542 (49%), Positives = 364/542 (67%), Gaps = 13/542 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 MS N ++Y+ D+IQ+L+GLDAV+KRP MYIG TDG GLHH+++E++DNA+DE+L G Sbjct: 1 MSKKEININNYNDDAIQVLEGLDAVRKRPGMYIGSTDGA-GLHHLVWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + D I VT+N DGS TV D+GRG+PT +H GI EVI T LHAGGKF Q YK SGG Sbjct: 60 FGDRIDVTINKDGSLTVQDHGRGMPTGMHA-MGIPTVEVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALS+WL++ I R+G +Y+ F N G L G+A TGT+VTF+P Sbjct: 119 LHGVGSSVVNALSNWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTAPKSKTGTKVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 + IFS DF Y+T+ RL E +FL +V +SL DKR+ E I Y+ G++ FVSYL+ Sbjct: 179 DATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEA--IEFHYENGVQDFVSYLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L +G + +++A+++NDG+ +N+L F NN+ KDGGTH +GL+SA+T Sbjct: 237 EDKEILTPVL-YFEGEDNGFQVEVALQYNDGFSDNILSFVNNVRTKDGGTHETGLKSAIT 295 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG +VLSI +P+ +F QTK+KL S R V Sbjct: 296 KVMNDYARKTGLLKEKDKNLEGSDYREGLAAVLSILVPEEHLQFEGQTKDKLGSPLARPV 355 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGK 413 V+ V D L+ +L E+ A +++K + A R+AAR+ARD +R +K D L GK Sbjct: 356 VDGIVADKLTFFLMENGELASNLIRKAIKARDAREAARKARDESRNGKKNKKDKGLLSGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++P K+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N +A+ +L ++E Sbjct: 416 LTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVVNTAKAKMADILKNEE 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T+I +G G+G D F I Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 476 INTMIYTIGAGVGAD-FSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 534 Query: 534 LY 535 +Y Sbjct: 535 VY 536 >gi|94992112|ref|YP_600211.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096] gi|94545620|gb|ABF35667.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096] Length = 651 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 270/617 (43%), Positives = 388/617 (62%), Gaps = 5/617 (0%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + YDA IQ+L+GL+AV+ RP MYIG T ++E++DN+IDE+L G+A Sbjct: 9 EKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKAGFASISVWEIVDNSIDEALAGFASH 68 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + D S TV D+GRGIP D+ + G A E + T LHAGGKF YKVSGGLHGV Sbjct: 69 IKVFIEADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGV 128 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS+ L +R+ + G I+ F G + L V + TGT V F P +IF+ Sbjct: 129 GSSVVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVI-GTTDVTGTTVHFTPDPEIFT 187 Query: 184 VQ-DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F+Y L R++EL+FLN ++IS+ DKRS +E Y+GGI ++V +L+ K Sbjct: 188 ETTQFDYSVLAKRIQELAFLNHGLKISITDKRSGMEQEEHFHYEGGIGSYVEFLNDKKDV 247 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 + ++PI G + I++++AM++ Y E V+ F NNI +GGTH G R+ALTR I Sbjct: 248 IFETPIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAALTRVIND 307 Query: 303 YVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 Y +K+ K+++ ++ G+D REG T+V+S+K P+P+F QTK KL +SEV + ++ Sbjct: 308 YAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSE 367 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 +L E+P A+ IV+K + AS R AA+RAR++TR+K L+I++LPGKLADCS D Sbjct: 368 AFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDA 427 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 ++ELF+VEGDSAGGSAK GR+RE QAILP+RGKILNVE+A DK+L+++EI +L TA+G Sbjct: 428 NQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMG 487 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 TG G D FD++K RY K++IMTDADVDGAHIRTLLLT +R M ++ G++YI +PP+Y Sbjct: 488 TGFGAD-FDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIY 546 Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 G+ G ++ + D + E SK + + +DD + + Sbjct: 547 GVKVGSEIKEYI--QPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMD 604 Query: 603 DFYPNHDKTFIEQAVIS 619 + ++ A + Sbjct: 605 PENRLMARVTVDDAAEA 621 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 45/76 (59%), Positives = 60/76 (78%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 SIGR ++QRYKGLGEM+ QLWETT++P+ R + RV + DA++AD +F LMGD VEP Sbjct: 576 SIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVFDMLMGDRVEP 635 Query: 788 RREFIQENSLPSALDI 803 RR+FI+EN++ S LDI Sbjct: 636 RRDFIEENAVYSTLDI 651 >gi|225016753|ref|ZP_03705945.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum DSM 5476] gi|224950421|gb|EEG31630.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum DSM 5476] Length = 642 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 284/563 (50%), Positives = 386/563 (68%), Gaps = 5/563 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N +YD + IQ+L+GL+AV+KRP MYIG T G GLHH++YE++DNAIDE+L G+ I V Sbjct: 5 NQNYDENQIQVLEGLEAVRKRPGMYIGST-GPKGLHHLVYEIVDNAIDEALAGFCTQIDV 63 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 + V DNGRGIPT +H++EGISAA V+ T LHAGGKF YKV+GGLHGVG S Sbjct: 64 EILPGNIIHVVDNGRGIPTGIHQKEGISAATVVYTILHAGGKFGGGGYKVAGGLHGVGAS 123 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS WL+L++ NI+ F G D + V G + TGTEV F +IFS + Sbjct: 124 VVNALSEWLELKVYDGENIHYQRFERGHYDKQMEVIGKT-DRTGTEVAFKADPEIFSETE 182 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD--RHKKPLM 244 ++YDTL RLRE +FLN+ V+I + D+R PEP + Y+GGI +FV ++ + + L Sbjct: 183 YDYDTLLTRLREQAFLNAGVKIVMADRRQPEPVVENLHYEGGIISFVEFIHKRKSLETLH 242 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I ++ + ++A+++ND Y+E +L F NNI +GGTH G ++ALTR Y Sbjct: 243 PDVIYLKAQEGDSVAEVALQYNDSYNELILSFANNIHTAEGGTHEIGFKNALTRVFNDYG 302 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K+ K+ +++ GDD REG T+++S+K+ + F QTK KL + EVR++V+ V++ L Sbjct: 303 RKNNLLKEADKNLSGDDVREGLTAIISVKLTECEFEGQTKSKLGNIEVRALVDRMVSEKL 362 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + + EE+P A+ I K L+A R+AAR+AR+LTRRK L+ ASLPGKLADCSERDP Sbjct: 363 TNFFEENPSVARSIFDKALNAQRAREAARKARELTRRKSALETASLPGKLADCSERDPAL 422 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +EL++VEGDSAGGSAK GR R+ QAILPL GK+LNVE+AR D++ + ++ ++TALGT Sbjct: 423 TELYIVEGDSAGGSAKSGRERKYQAILPLWGKMLNVEKARLDRVYGNDKLMPVVTALGTS 482 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 IG D FDI KLRY+KI+IM DADVDG+HIRTLLLTFFFR M LI G +YI +PPLY + Sbjct: 483 IG-DDFDITKLRYNKIVIMADADVDGSHIRTLLLTFFFRFMRPLIDQGHVYIAQPPLYKL 541 Query: 545 TRGKSLQYVKDEESLEDYLINQS 567 +RGK +Y ++ YL Sbjct: 542 SRGKQHRYAYSDKERNQYLSELR 564 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ QLWETT+NP+ R +++V++ DA AD++F+ LMGD+V PRREFI++N Sbjct: 574 IQRYKGLGEMDPEQLWETTMNPENRVMIKVEMEDAVAADEVFTILMGDKVGPRREFIEKN 633 Query: 796 SLPS-ALDI 803 + LD+ Sbjct: 634 AQYVQNLDV 642 >gi|225870671|ref|YP_002746618.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047] gi|225700075|emb|CAW94141.1| topoisomerase IV subunit B [Streptococcus equi subsp. equi 4047] Length = 649 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 260/623 (41%), Positives = 386/623 (61%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VTLN DGS T+SD+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L +A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS +F ++T+ RL+E +FL +V+++L D R +P Y+ G++ FV+YL+ Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VES V++ L+ +L E+ A +++ + R +K D L GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F+++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLDDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGASLQRYKGLGEMNADQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 +D + I I D + Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 41/73 (56%), Positives = 56/73 (76%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 L+ + KG S+QRYKGLGEMNA QLWETT++PDTR+L+RV I D ++A+ S LMG Sbjct: 566 LEDLRKEFGKGASLQRYKGLGEMNADQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMG 625 Query: 783 DEVEPRREFIQEN 795 D+ PRR++I++N Sbjct: 626 DKAAPRRQWIEDN 638 >gi|82798482|gb|ABB91904.1| DNA gyrase subunit B [Acholeplasma cavigenitalium] Length = 588 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 253/567 (44%), Positives = 364/567 (64%), Gaps = 6/567 (1%) Query: 24 VKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGI 83 V+KRP MYIG T G G HH+++E++DN+IDE+L GYA I + + VSD+GRGI Sbjct: 1 VRKRPGMYIG-TTGSDGFHHLVWEIVDNSIDEALAGYAKEILLEILPGEIIRVSDDGRGI 59 Query: 84 PTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREG 143 P D+H G A E IMT LH+GGKF+ +SYKVSGGLHGVG +VVNALS W + + R Sbjct: 60 PVDIHPHTGRPAVETIMTTLHSGGKFDGESYKVSGGLHGVGAAVVNALSEWFVVEVHRNN 119 Query: 144 NIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFL 202 Y SF GI D L V G + + +GT + + +IF ++++ L+ R+++L+FL Sbjct: 120 QAYRQSFKRGIPDGDLEVCGESAH-SGTIIEYKFDPEIFIETTSYDFERLRQRIQQLAFL 178 Query: 203 NSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLA 262 N V++++ DKR E E Y+GG+ + +L+ K + Q + D+I+I++ Sbjct: 179 NRGVKLTIADKRKSEAVEFEYLYEGGLVEYAEFLNGGKAKINQELFYTEEMVDDINIEIT 238 Query: 263 MRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDC 322 +++ND Y+EN+ F NNIP ++GG H G + AL R + +Y + + K++ + G+D Sbjct: 239 IQYNDTYNENIYSFANNIPTREGGMHEDGFKMALRRVLFNYAKDNK-LVKEEEAFAGEDV 297 Query: 323 REGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKV 382 REG +++S+K PDP+F QTK KL ++EVR++ + GL +L E+P +AK I++K Sbjct: 298 REGLVAIISVKHPDPQFEGQTKTKLGNTEVRAITSQVLQSGLERFLLENPNDAKAIIEKA 357 Query: 383 LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQG 442 A + R AA +AR+ TRRK LD KLADC +D ++EL++VEGDSAGGSAKQG Sbjct: 358 KKARLARIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSAGGSAKQG 417 Query: 443 RSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R E QAILPLRGK+LNVE+A +++L++QEI TL A+GTG G D FD +K RYHKIII Sbjct: 418 RESEFQAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFG-DEFDASKARYHKIII 476 Query: 503 MTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562 MTDADVDGAHIRTLLLTF +R + LI G++Y +PPLY I+ G+ +YV ++ LE+ Sbjct: 477 MTDADVDGAHIRTLLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYSDQELEE- 535 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRN 589 + G ++ L + Sbjct: 536 TLKTFGERYQIQRYKGLGEMNPEQLWD 562 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 17/240 (7%) Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 + + K+ + + + ++ + + + Sbjct: 364 RIAAHKAREQTRRKNPLDQLGFASKLADCRTKDATRAELYIVEGDSAGGSAKQGRESE-F 422 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 +E+A I + N + + ++ + + + + K + + Sbjct: 423 QAILPLRGKVLNVEKANIERILNNQEILTLFQAIGTGFGDEFDASKARYHKIIIMTDADV 482 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC--NGDKIKITG 718 D R + +F +Y R + + + Sbjct: 483 DGAHIRT-------------LLLTFLYRYLRPLIELGYIYFAQPPLYKISYGRREEYVYS 529 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 L +T+ + G + +QRYKGLGEMN QLW+TT+NP+TR+LLRV + DA AD +F+ Sbjct: 530 DQELEETLKTFGER-YQIQRYKGLGEMNPEQLWDTTMNPETRTLLRVTLKDAMDADQVFT 588 >gi|309809880|ref|ZP_07703730.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 2503V10-D] gi|308169832|gb|EFO71875.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 2503V10-D] Length = 647 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 256/600 (42%), Positives = 369/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ G+ Sbjct: 1 MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGL Sbjct: 58 GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+ Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416 + + + LS +L E+ A+ +V+K A R+AA++ARD +R + GKL Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T Sbjct: 415 AQSRIPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533 Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 534 ALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G + I L + G KG S+QR Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVDIKYSWTDEELQKNVKEFG-KGYSLQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAEHRVTTLMGDKVAARRKWIDEN 632 >gi|294813745|ref|ZP_06772388.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces clavuligerus ATCC 27064] gi|294326344|gb|EFG07987.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces clavuligerus ATCC 27064] Length = 693 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 37 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 95 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + E A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 96 TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 155 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ PL +TGT VTF DIF + Sbjct: 156 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 214 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230 ++++TL R +E++FLN + ++L D+R + R +T +Y+GGI Sbjct: 215 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 274 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + + I I+ +S+++AM+WN Y E V F N I +GGT Sbjct: 275 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 334 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL Sbjct: 335 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 394 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V++ L+ W + +P EA IV+K + A R AAR+ARDLTRRKG+L+ Sbjct: 395 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 454 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR DK Sbjct: 455 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 514 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L + E+ LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 515 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 573 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPLY I G+ + D L+ + + DS Sbjct: 574 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 633 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 634 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 691 Score = 142 bits (358), Expect = 3e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 607 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 666 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 667 SVLMGEDVEARRSFIQRNAKDVRFLDI 693 >gi|302191325|ref|ZP_07267579.1| DNA topoisomerase IV subunit B [Lactobacillus iners AB-1] gi|312872974|ref|ZP_07733034.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|312874129|ref|ZP_07734163.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d] gi|312875688|ref|ZP_07735689.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b] gi|325912715|ref|ZP_08175098.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B] gi|329920278|ref|ZP_08277062.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G] gi|311088942|gb|EFQ47385.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2053A-b] gi|311090199|gb|EFQ48609.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2052A-d] gi|311091496|gb|EFQ49880.1| DNA topoisomerase IV, B subunit [Lactobacillus iners LEAF 2062A-h1] gi|325478136|gb|EGC81265.1| DNA topoisomerase IV, B subunit [Lactobacillus iners UPII 60-B] gi|328936323|gb|EGG32771.1| DNA topoisomerase IV, B subunit [Lactobacillus iners SPIN 1401G] Length = 647 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 257/600 (42%), Positives = 370/600 (61%), Gaps = 15/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY Sbjct: 1 MTN--LNNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGL Sbjct: 58 GKEINVTIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S Sbjct: 117 HGVGSSVVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDS 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G Sbjct: 177 KIFSTTIYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K + +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Sbjct: 235 DKDTIGDIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+ Sbjct: 295 FNDYAKKQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLAD 416 + + + LS +L E+ A+ +V+K A R+AA++ARD +R + GKL Sbjct: 355 NIIYEQLSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTP 414 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 R+P+K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T Sbjct: 415 AQSRNPEKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINT 474 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I +G G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI Sbjct: 475 MIHTIGAGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYI 533 Query: 537 IKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 534 ALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFGKGYSLQRFKGLGEMNADQLWETTMN 593 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G ++I L + G KG S+QR Sbjct: 517 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFG-KGYSLQR 575 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 576 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 632 >gi|195978267|ref|YP_002123511.1| DNA topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974972|gb|ACG62498.1| Topoisomerase IV subunit B ParE [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 649 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 261/623 (41%), Positives = 385/623 (61%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VTLN DGS T+SD+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L SA +GT VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIASAPKSKSGTRVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS +F ++T+ RL+E +FL +V+++L D R +P Y+ G++ FV+YL+ Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VES V++ L+ +L E+ A +++ + R +K D L GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGLLSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQRYKGLGEMNASQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 +D + I I D + Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I ++ N D ++ + Sbjct: 461 VLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + + + + G K++ L+ + KG ++Q Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNASQLWETT++PDTR+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 581 RYKGLGEMNASQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638 >gi|172057602|ref|YP_001814062.1| DNA topoisomerase IV subunit B [Exiguobacterium sibiricum 255-15] gi|171990123|gb|ACB61045.1| DNA topoisomerase IV, B subunit [Exiguobacterium sibiricum 255-15] Length = 653 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 266/600 (44%), Positives = 385/600 (64%), Gaps = 17/600 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ ++ ++Y+ D+IQ+L+GL+AV+KRP MYIG TD GLHH++YE++DNAIDE+L G+ Sbjct: 1 MATDL--NNYNDDAIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V ++ D + TV D+GRG+PT +H G AEVI T LHAGGKF Q YK SGGL Sbjct: 58 GEQIDVIIHKDNAITVRDHGRGMPTGMHAS-GKPTAEVIFTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS+ LK+ I R+G +E +F + GI L+ TG GT V F P Sbjct: 117 HGVGASVVNALSTQLKVTIYRDGKQFEQTFEDGGIPKTTLLETG-TTRQKGTSVYFKPDG 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +NYDTL RLRE +FL ++I+L D+RS + T Y+ G+ FV YL+ Sbjct: 176 KIFSTLTYNYDTLAERLRESAFLLKGLKITLTDERSDKA--DTFQYEDGVSEFVGYLNDD 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G+ ++I +D+A ++ D Y ENVL F NN+ +DGGTH G ++A+TR Sbjct: 234 KDTLHPTVA-FEGTENDIEVDIAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRV 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + Y K+ K+ +++ G+D REG T ++SI++P+ +F QTK KL S E R+ + Sbjct: 293 MNEYARKNTLLKEKDKNLDGNDIREGLTMIVSIRIPEEFLQFEGQTKSKLGSPEARTSCD 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + + LS +LEE+P A +++KK + A+ R+AAR+AR+ R K + L GKL Sbjct: 353 AVITRRLSTYLEENPQTATLLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 + ++ +K+ELFLVEGDSAGGSAKQGR+R QAILPLRGK+LN E+A+ ++ ++EI Sbjct: 413 AASKNAEKNELFLVEGDSAGGSAKQGRNRTFQAILPLRGKVLNTEKAKLADIMKNEEINM 472 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I A+G+G+G D FD++ + K+IIMTDAD DGAHI+ LLLTFFFR M LI G +++ Sbjct: 473 IIHAIGSGVGAD-FDLSDCNFDKVIIMTDADTDGAHIQVLLLTFFFRYMRPLIDAGKVFV 531 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY ++ + + +YV DEE+L I+ + + + +D Sbjct: 532 ALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGKGYMIQRYKGLGEMNAPQLWETTMD 591 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + S N D ++ + Sbjct: 453 VLNTEKAKLADIMKNEEINMIIHAIGSGVGADFDLSDCNFDKVIIMTDADTDGAHIQVLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKITGPCSLLDTIFSIGRKGISMQ 737 F F I + ++ + + +K + L KG +Q Sbjct: 513 LTFFFRYMRPLIDAGKVFVALPPLYRVSKGKGKSEKFEYVWDEETLAKTTKKFGKGYMIQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT++P+TR+L+RV I DA+ A+ S LMGD V RR +I++N Sbjct: 573 RYKGLGEMNAPQLWETTMDPETRTLIRVTIDDAAVAEKRVSVLMGDNVGHRRSWIEDN 630 >gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana] Length = 657 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 266/600 (44%), Positives = 372/600 (62%), Gaps = 15/600 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 6 ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 64 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 I V L+ D S ++SDNGRGIPTDLH G S+ E ++T LHAGGKF KS Y VSGGL Sbjct: 65 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 124 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ ++R+G ++ + G L + GT + F P Sbjct: 125 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 184 Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231 + + F+++T+ R+REL+FLN V ISL + R++ FY GG+ Sbjct: 185 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 244 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +VS+L+ KKPL + + ++D++++W D Y + +L + N+I DGGTH+ Sbjct: 245 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 303 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G++++LTR + S +K K+ S+ G+ REG T ++S+K+P+P F QTK +L + Sbjct: 304 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 363 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+ V + L+ +LE HP + I+ K L+A AA+RAR+L R K VL +SL Sbjct: 364 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 423 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS DP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M Sbjct: 424 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 483 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI LI LG G+ + F+ LRYHKIII+TDADVDGAHIRTLLLTFFFR +L Sbjct: 484 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 543 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G +Y+ PPL+ + RGK Y D+ +L+ + + G + L Sbjct: 544 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWE 603 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 38/340 (11%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 K+I D + G H+R L ++P+ G P + I +Y+ + Sbjct: 321 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 380 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594 L ++ +S+ + + + +L + Sbjct: 381 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 440 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649 ++ + QA++ + + + + K N I K Sbjct: 441 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 500 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E ++ I++ V + F F + + I + + Sbjct: 501 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 559 Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + L I + G ++QR+KGLGEM +QLWETT+NPDTR L ++ + Sbjct: 560 GKQAHYCYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 618 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803 DA++ + +FS LMG V+ R+E I+ + L LDI Sbjct: 619 DDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 657 >gi|257051019|sp|Q9SS38|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor Length = 661 Score = 540 bits (1391), Expect = e-151, Method: Composition-based stats. Identities = 266/600 (44%), Positives = 372/600 (62%), Gaps = 15/600 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 10 ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGL 120 I V L+ D S ++SDNGRGIPTDLH G S+ E ++T LHAGGKF KS Y VSGGL Sbjct: 69 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ ++R+G ++ + G L + GT + F P Sbjct: 129 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 188 Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231 + + F+++T+ R+REL+FLN V ISL + R++ FY GG+ Sbjct: 189 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 248 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +VS+L+ KKPL + + ++D++++W D Y + +L + N+I DGGTH+ Sbjct: 249 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 307 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G++++LTR + S +K K+ S+ G+ REG T ++S+K+P+P F QTK +L + Sbjct: 308 GVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNP 367 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 EVR +V+ V + L+ +LE HP + I+ K L+A AA+RAR+L R K VL +SL Sbjct: 368 EVRKIVDQSVQEYLTEYLELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSL 427 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKLADCS DP +SE+F+VEGDSAGGSAKQGR R QAILPLRGKILN+ER M Sbjct: 428 PGKLADCSSTDPAESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYK 487 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 ++EI LI LG G+ + F+ LRYHKIII+TDADVDGAHIRTLLLTFFFR +L Sbjct: 488 NEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFD 547 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 G +Y+ PPL+ + RGK Y D+ +L+ + + G + L Sbjct: 548 AGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWE 607 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 38/340 (11%) Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDE 556 K+I D + G H+R L ++P+ G P + I +Y+ + Sbjct: 325 KVIKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEY 384 Query: 557 ESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDA 594 L ++ +S+ + + + +L + Sbjct: 385 LELHPDVLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEI 444 Query: 595 LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKS 649 ++ + QA++ + + + + K N I K Sbjct: 445 FIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKG 504 Query: 650 EKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC 709 E ++ I++ V + F F + + I + + Sbjct: 505 EDFNKENLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVER 563 Query: 710 NGDKIKITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI 767 + L I + G ++QR+KGLGEM +QLWETT+NPDTR L ++ + Sbjct: 564 GKQAHYCYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVV 622 Query: 768 TDASQADDLFSRLMGDEVEPRREFIQENS----LPSALDI 803 DA++ + +FS LMG V+ R+E I+ + L LDI Sbjct: 623 DDAAETNMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 661 >gi|237732924|ref|ZP_04563405.1| DNA topoisomerase parE [Mollicutes bacterium D7] gi|229383993|gb|EEO34084.1| DNA topoisomerase parE [Coprobacillus sp. D7] Length = 645 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 263/601 (43%), Positives = 373/601 (62%), Gaps = 16/601 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ S+YD +IQIL+GL+AV+KRP MYIG TD GLHH+++E++DNAIDE+L G+ Sbjct: 1 MNYMAAKSNYDESNIQILEGLEAVRKRPGMYIGSTDA-RGLHHLVWEIVDNAIDEALSGF 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFN-QKSYKVSGG 119 D I VT+ D S V+D+GRG+PT +H G EVI+T LHAGGKFN YK SGG Sbjct: 60 GDNIQVTICKDNSIKVTDHGRGMPTGMHAS-GKPTTEVILTILHAGGKFNEDGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSSWL++ I R+G I++ F + G L V G + N TGT + F+P Sbjct: 119 LHGVGASVVNALSSWLEVTIYRDGKIWQQRFEDGGSKVGKLKVIGKS-NQTGTTIHFMPD 177 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 S IFSV ++N+ T+ RL E +FL ++I L+D+R+ + G+ AFV YL+ Sbjct: 178 SSIFSVYEYNFSTISERLMESAFLLKGIKIDLVDERTGKEISYQY--DNGLTAFVEYLNY 235 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L I I+G+ + I +D+AM++ GY E L F N + DGGTH +G RSALTR Sbjct: 236 EKETLN-EIINIEGTNNEIEVDVAMQFTSGYQETTLSFVNLVRTGDGGTHETGFRSALTR 294 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVV 356 Y K K+ +++ G+D REG ++++SIK+P+ +F QTK KL + E R+VV Sbjct: 295 TFNEYARKYGLLKEKDKNLEGNDVREGLSAIISIKVPEHYLQFEGQTKSKLGTPEARNVV 354 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASM-VRDAARRARDLTRRKGVLDIASLPGKLA 415 ++ V + L+ +LEEH A +VKK++ A+ A + + KG L GKLA Sbjct: 355 DTVVYEKLTYFLEEHKETADNLVKKMIKAAQVRDAARKAREAARKGKGPRQEKILSGKLA 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D K+ EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI Sbjct: 415 PAQSKDKKRKELYLVEGDSAGGSAKQGRDRKYQAILPLRGKVVNTEKAAMADILKNEEIA 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F+ Y+K+IIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 475 TIINTIGAGVGAD-FNEKDSNYNKVIIMTDADTDGAHIQILLLTFFYRYMRDLITAGKVY 533 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY ++ + + + Y +E+ LE+ ++ + + + + Sbjct: 534 IALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGRGYNVQRYKGLGEMNASQLWETTM 593 Query: 592 D 592 + Sbjct: 594 N 594 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 7/180 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E ++ ++A +N I ++ +N + ++ + Sbjct: 456 VVNTEKAAMADILKNEEIATIINTIGAGVGADFNEKDSNYNKVIIMTDADTDGAHI--QI 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI-FSIGRK----GIS 735 + +F +Y R + + K + +K G + Sbjct: 514 LLLTFFYRYMRDLITAGKVYIALPPLYKVSKKSGKKEDIVYAWEEDELEEAKKKIGRGYN 573 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNASQLWETT+NP+TR+L++V I DA+ + S LMGD+VEPRRE+I++N Sbjct: 574 VQRYKGLGEMNASQLWETTMNPETRTLIQVSIEDAAIVERRVSVLMGDKVEPRREWIEQN 633 >gi|260583815|ref|ZP_05851563.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC 700633] gi|260158441|gb|EEW93509.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC 700633] Length = 682 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 262/667 (39%), Positives = 380/667 (56%), Gaps = 21/667 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + Y+ DSIQ+L+GL+AV+KRP MYIG TD GLHH+ YE++DNA+DE+L GY Sbjct: 1 MSK--VTNQYNDDSIQVLEGLEAVRKRPGMYIGSTD-HRGLHHLAYEIVDNAVDEALSGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I VT++ DGS +V DNGRG+PT H GI +VI T LHAGGKF Q YK SGGL Sbjct: 58 ASKIDVTIHKDGSLSVRDNGRGMPTGKHAS-GIPTIQVIFTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFI-NGILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + R+G +Y +F G + + + +GT V FLPS Sbjct: 117 HGVGASVVNALSDWLEVEVLRDGVLYTQTFKTGGEKVSSIKKEKTNRKGSGTTVRFLPSK 176 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS ++Y+TL RLRE +FL + I+L D+R+ Y+ GI F+ YL+ Sbjct: 177 HIFSTIVWSYETLAERLRESAFLLKGLTITLTDERTDTS--DEFCYEEGIRNFIQYLNEE 234 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + D + + A ++NDGY E +L F NN+ KDGGTH G+++ALT+ Sbjct: 235 KDTLSPIVD-FNSTIDGVETEFAFQYNDGYSETILSFVNNVRTKDGGTHEVGMKTALTKA 293 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG T+++S+++P+ +F QTK+KL + RS+V+ Sbjct: 294 FNEYARKVGLLKEKDKNLEGSDVREGLTAIVSLRVPEEILQFEGQTKDKLGTPAARSIVD 353 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + + + L +L E+ A+ +++K L A R+A+R+AR+ +KG L GKL Sbjct: 354 NTIFEHLGIFLTENGEIAQELIRKALKAREAREASRKAREESRNGKKGKKKETLLSGKLT 413 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK++N E+A +L ++EI Sbjct: 414 PAQGKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTEKASLSDILKNEEIN 473 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F+I Y KI+IMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 474 TIIYTIGAGVGND-FNIEDCNYDKIVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVY 532 Query: 536 IIKPPLYGITRGKSLQYVKDEE---SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + PPL+ I++G + V + + I + + G ++ + L Sbjct: 533 LALPPLFKISKGTGKKQVVEYAWTEKELEEKIKKVGKGYLLQRYKGLGEMNADQLWET-- 590 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + S + L E Sbjct: 591 ---TMNPDTRTLIRVVIDDKAQAERRVSTLMGNKVEPRRKWIESHVEFSLEDGKSILETE 647 Query: 653 WHGSINN 659 H ++N Sbjct: 648 GHLTVNE 654 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 41/64 (64%), Positives = 53/64 (82%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEMNA QLWETT+NPDTR+L+RV I D +QA+ S LMG++VEPRR++ Sbjct: 569 KGYLLQRYKGLGEMNADQLWETTMNPDTRTLIRVVIDDKAQAERRVSTLMGNKVEPRRKW 628 Query: 792 IQEN 795 I+ + Sbjct: 629 IESH 632 >gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 620 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 264/598 (44%), Positives = 384/598 (64%), Gaps = 6/598 (1%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIG T E GLHH+++E++DN+IDE+L G+A I V + D S TV D+GRGIP Sbjct: 1 MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFATHIEVFIEKDDSITVVDDGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A E + T LHAGGKF YKVSGGLHGVG SVVNALS+ L + + R G I Sbjct: 60 DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVAVHRNGKI 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204 + + G + + L V G + GT V F P +IF+ F++D L R++EL+FLN Sbjct: 120 HYQEYRRGHVVSDLAVIGDT-DRHGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++IS+ DKR +E Y+GGI ++V +++ +K+ + ++PI G D IS+++AM+ Sbjct: 179 GLRISITDKREGIEQEKHYHYEGGISSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 + YHE V+ F NNI +GGTH G R+ALTR I Y ++ K+ ++ G+D RE Sbjct: 239 YTTSYHETVMSFANNIHTHEGGTHEQGFRTALTRVINDYARQNKLLKEKDDNLTGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+V+S+K P+P+F QTK KL +SEV + ++ S +L E+P AK IV+K + Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSRFLLENPQIAKKIVEKGIL 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR++TR+K L+I++LPGKLADCS D +ELF+VEGDSAGGSAK GR Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDATMNELFIVEGDSAGGSAKSGRD 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 RE+QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G + FD++K RYHK++IMT Sbjct: 419 REHQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGAE-FDVSKARYHKLVIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ G ++ + ++ + Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGANQEIEL 537 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 +++ SK + + +DD + + + ++ A + Sbjct: 538 QEAM--ARHSVGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I I G +I + S+GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 518 KVGSEIKEYIQPGANQEIE-LQEAMAR-HSVGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+EN++ S LDI Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDI 620 >gi|326442166|ref|ZP_08216900.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 687 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 31 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 89 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + E A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 90 TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 149 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ PL +TGT VTF DIF + Sbjct: 150 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 208 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230 ++++TL R +E++FLN + ++L D+R + R +T +Y+GGI Sbjct: 209 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 268 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + + I I+ +S+++AM+WN Y E V F N I +GGT Sbjct: 269 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 328 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL Sbjct: 329 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 388 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V++ L+ W + +P EA IV+K + A R AAR+ARDLTRRKG+L+ Sbjct: 389 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 448 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR DK Sbjct: 449 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 508 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L + E+ LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 509 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 567 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPLY I G+ + D L+ + + DS Sbjct: 568 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 627 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 628 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 685 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 601 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 660 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 661 SVLMGEDVEARRSFIQRNAKDVRFLDI 687 >gi|225868402|ref|YP_002744350.1| topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus] gi|225701678|emb|CAW99000.1| topoisomerase IV subunit B [Streptococcus equi subsp. zooepidemicus] Length = 649 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 267/623 (42%), Positives = 393/623 (63%), Gaps = 17/623 (2%) Query: 1 MSDNIQN-SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + ++Y+ D+IQ+L+GL+AV+KRP MYIG TD +GLHH+I+E++DNA+DE+L G Sbjct: 1 MAKKEISITNYNDDAIQVLEGLEAVRKRPGMYIGSTDA-TGLHHLIWEIVDNAVDEALSG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 + + I VTLN DGS T+SD+GRG+PT H GI +VI T LHAGGKF Q YK SGG Sbjct: 60 FGNEIDVTLNKDGSATISDSGRGMPTGQHA-LGIPTVQVIFTILHAGGKFGQGGYKTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGN-DTGTEVTFLP 177 LHGVG SVVNALSSWL++ I R+G +Y+ F N G L +A +GT VTF+P Sbjct: 119 LHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGRPVTGLEKIATAPKSKSGTRVTFMP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLD 237 IFS +F ++T+ RL+E +FL +V+++L D R +P Y+ G++ FV+YL+ Sbjct: 179 DDKIFSTTEFKWNTIAERLKESAFLLKTVKMTLTDLRGDDPVVEEFHYENGVQDFVAYLN 238 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 K+ L I ++G + +++A+++NDG+ +N+L F NN+ KDGG+H +GL+SA+T Sbjct: 239 EDKETLTP-VIYMEGQEQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAIT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSV 355 + + Y K+ K+ +++ G D REG ++VLSI +P+ +F QTK+KL S R + Sbjct: 298 KAMNDYARKTSLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKLGSPLARPI 357 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GK 413 VES V++ L+ +L E+ A +++K + A R+AARRARD +R GK Sbjct: 358 VESIVSEKLTFFLLENGELAGHLIRKAIKARDAREAARRARDESRNGKKNKKDKGILSGK 417 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L ++PKK+EL+LVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++E Sbjct: 418 LTPAQSKNPKKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKMADILKNEE 477 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I T++ +G G+G D F++ + Y KIIIMTDAD DGAHI+TLLLTFF+R M L+ G Sbjct: 478 INTMVYTIGAGVGAD-FNLEDINYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGH 536 Query: 534 LYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +YI PPLY ++ + + + Y + LED ++ + + + Sbjct: 537 VYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQRYKGLGEMNASQLWET 596 Query: 590 FIDDALK--IDKLIKDFYPNHDK 610 +D + I I D + Sbjct: 597 TMDPDTRTLIRVTIDDLARAERR 619 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ + I ++ N D ++ + Sbjct: 461 VLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDINYDKIIIMTDADTDGAHIQTLL 520 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + + + + G K++ L+ + KG ++Q Sbjct: 521 LTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKSEKVSYAWTDGELEDLRKEFGKGATLQ 580 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNASQLWETT++PDTR+L+RV I D ++A+ S LMGD+ PRR++I++N Sbjct: 581 RYKGLGEMNASQLWETTMDPDTRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDN 638 >gi|260904977|ref|ZP_05913299.1| DNA gyrase subunit B [Brevibacterium linens BL2] Length = 665 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 261/565 (46%), Positives = 362/565 (64%), Gaps = 24/565 (4%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA I +L+GL+AV+KRP MYIG T E GLHH++ E++DN++DE++ GY I VT+ Sbjct: 9 YDAGDITVLEGLEAVRKRPGMYIGSTS-ERGLHHLVQEIVDNSVDEAMAGYCSHIEVTIL 67 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DG V D+GRG+P +H EG EVI+T LHAGGKF Y V+GGLHGVG +VVN Sbjct: 68 ADGGVRVVDDGRGMPVAMHPTEGKPTVEVILTILHAGGKFGGGGYAVAGGLHGVGSTVVN 127 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS L++ ++R+G + M+F G+ L G+ ++TGT VTF P S IF DF+Y Sbjct: 128 ALSERLEVEVRRDGYFWNMNFEKGVPTGELTR-GAETSETGTMVTFWPDSTIFETTDFSY 186 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-----------------MFYKGGIEAF 232 + L+ R ++++FLN ++ISL D+R + + Y+ G+ + Sbjct: 187 EYLRARFQQMAFLNKGMKISLTDERHVQVDDDNVQIDEDEETDAKPREATYHYEHGLLDY 246 Query: 233 VSYLDRHKKPL--MQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 V YL+ KK I + + +S+++AM+W Y E+V + N I +GGTH Sbjct: 247 VQYLNSTKKADLVHPDVIVFEAEEAEETLSLEIAMQWTTSYSESVHTYANVINTHEGGTH 306 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 G R+ALT I +Y + ++ ++ GDD REG T+V+S+K+ DP+F QTK KL Sbjct: 307 EEGFRTALTSLINNYAREQKLLREKDANLTGDDIREGLTAVISVKLGDPQFEGQTKTKLG 366 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 +SEV+ V+ V D L W+E +P +AK +V+K L AS R AAR+AR+ TRRKG+L+ + Sbjct: 367 NSEVKGFVQRVVRDELGHWMESNPAQAKDVVRKGLQASQARLAARKAREATRRKGLLESS 426 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 +PGKL DC +DP SE+F+VEGDSAGGSA QGR+ QAILPLRGKILNVE+AR D+ Sbjct: 427 GMPGKLKDCQSKDPTISEVFIVEGDSAGGSATQGRNPNTQAILPLRGKILNVEKARLDRA 486 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 L + E+ +ITA GTGIG++ FD+ KLRYHKI++M DADVDG HI TLLLT FR M L Sbjct: 487 LGNNEVQAMITAFGTGIGEE-FDLEKLRYHKIVLMADADVDGQHITTLLLTLIFRYMKPL 545 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYV 553 I +G++Y+ PPLY I + Sbjct: 546 IEHGYVYLATPPLYRIKWSNAPHEF 570 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 4/86 (4%) Query: 722 LLDTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 LL+ + G+ K +++QRYKGLGEMN S+LWETT++PD R L +V + D AD++F+ Sbjct: 580 LLEAGKAAGKRLPKDMAIQRYKGLGEMNYSELWETTMDPDHRLLKQVSLDDGIVADEIFT 639 Query: 779 RLMGDEVEPRREFIQENSLPSA-LDI 803 LMGD+V+ RR FIQEN+ LDI Sbjct: 640 VLMGDDVDSRRRFIQENAKDVRFLDI 665 >gi|259500636|ref|ZP_05743538.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM 13335] gi|259168020|gb|EEW52515.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus iners DSM 13335] Length = 654 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 256/594 (43%), Positives = 367/594 (61%), Gaps = 13/594 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 N++YD SIQIL GL+AV+KRP MYIG TD + GL+H++YE+LDN++DE++ GY I V Sbjct: 12 NNTYDDSSIQILHGLEAVRKRPGMYIGSTDRQ-GLNHLVYEILDNSVDEAMAGYGKEINV 70 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T++ D S +V D GRG+PT +H G+ EVI+T LHAGGKF +K+Y+ SGGLHGVG S Sbjct: 71 TIHPDNSVSVQDFGRGMPTGMHAS-GLPTIEVILTVLHAGGKFTEKNYQTSGGLHGVGSS 129 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS WLK+R+ R+G +E F++ G L G+ + TGT +TF P S IFS Sbjct: 130 VVNALSEWLKVRVVRDGQAFEEEFVDGGKPVGTLKKLGATSDKTGTLITFKPDSKIFSTT 189 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 + Y+T+Q RLRE +FL V+ +L D+R P+ ++ + G K + Sbjct: 190 IYKYETIQERLREAAFLLKGVRFTLTDERDPQRKDEFYYDDG--IKSFVSYLNEDKDTIG 247 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 +G DNI ++ + ++NDGY ENV+ F NN+ DGG+H +G RS TR Y + Sbjct: 248 DIFYFEGEIDNIKVEFSGQYNDGYSENVVSFVNNVRTIDGGSHEAGARSGFTRAFNDYAK 307 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV++ + + Sbjct: 308 KQGLLKTKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDNIIYEQ 367 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL-PGKLADCSERDP 422 LS +L E+ A+ +V+K A R+AA++ARD +R + GKL R+P Sbjct: 368 LSYYLMENGEFAQKLVQKAQRAREAREAAKKARDESRSGKKRKKKEVLSGKLTPAQSRNP 427 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 +K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++AR + ++EI T+I +G Sbjct: 428 EKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKARLQDIFKNEEINTMIHTIG 487 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 G+G F+I Y+KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPLY Sbjct: 488 AGVG-PDFEIADANYNKIIIMTDADTDGAHIQILLLTFFYRYMKPMIEAGRVYIALPPLY 546 Query: 543 GITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + +G+ ++Y +E L+ + ++ F + + ++ Sbjct: 547 KLEKGQGKNVEIKYSWTDEELQKDVKEFGKGYSLQRFKGLGEMNADQLWETTMN 600 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 5/117 (4%) Query: 683 FSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKIT---GPCSLLDTIFSIGRKGISMQR 738 F + I + R+ + L G ++I L + G KG S+QR Sbjct: 524 FFYRYMKPMIEAGRVYIALPPLYKLEKGQGKNVEIKYSWTDEELQKDVKEFG-KGYSLQR 582 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +KGLGEMNA QLWETT+NP+TR+L+RVKI DA+ A+ + LMGD+V RR++I EN Sbjct: 583 FKGLGEMNADQLWETTMNPNTRTLIRVKIDDAALAERRVTTLMGDKVAARRKWIDEN 639 >gi|160914998|ref|ZP_02077211.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991] gi|158432797|gb|EDP11086.1| hypothetical protein EUBDOL_01005 [Eubacterium dolichum DSM 3991] Length = 643 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 252/602 (41%), Positives = 359/602 (59%), Gaps = 15/602 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD SIQIL GL+AV+KRP MYIG TD GLHH+++E++DN+IDE+L GY Sbjct: 1 MAEKV----YDGSSIQILDGLEAVRKRPGMYIGSTDR-RGLHHLVWEIVDNSIDEALNGY 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKF-NQKSYKVSGG 119 D I +TL V D+GRG+P D+H G+ A +VI T LHAGGKF ++ YK SGG Sbjct: 56 GDTIRITLEEGDVICVEDHGRGMPVDMHAS-GVPAVQVIYTVLHAGGKFTSEGGYKTSGG 114 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS W+++ I R+G I+++ F + G L V G N TG+ V F Sbjct: 115 LHGVGASVVNALSEWVEVTIHRDGKIHQIRFEDGGSKVGKLKVLGKT-NKTGSIVRFKAD 173 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS +++ + R +E +FL + + + D+R + RE+ Y G+ AF+ YL Sbjct: 174 KHIFSTTKYSFSQIAERAQEDAFLLEGLCLEVRDERVGKEREVRYHYANGLTAFMDYLHE 233 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ Q G ++I +D A ++ D Y EN+ F N + KDGGTH +G ++A T+ Sbjct: 234 DKQTFHQPVA-FSGMVNDIKVDCAFQYTDEYQENIFSFVNIVRTKDGGTHETGAKNAFTK 292 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y ++ K ++ G D REG T +LS+ +P+ +F QTK KL + E ++ V Sbjct: 293 VFNEYARRNGILKDKDKNFEGSDVREGLTIILSLGIPENLLQFEGQTKGKLGTPEAKNAV 352 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA--SLPGKL 414 + V++ LS WLEE+ A ++KK+ AS R+AAR+AR+ R+ + L GKL Sbjct: 353 DQLVSEKLSFWLEENKELALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILSGKL 412 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 A +D +K EL+LVEGDSAGGSAKQGR QAILPLRGK+LN E+A + ++E+ Sbjct: 413 ASAQSKDARKKELYLVEGDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKNEEL 472 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I ALG G+G + F YHK+IIMTDAD DGAHI+TLLLTFF+R M LI G + Sbjct: 473 NTIIHALGAGVGAN-FHAEDASYHKVIIMTDADTDGAHIQTLLLTFFYRYMKELIEKGMV 531 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDA 594 YI PPLY + +GK +QY +E L+ ++ + + + + A Sbjct: 532 YIALPPLYKLQKGKEIQYAWSDEELDRIRKTFPKGYTLQRYKGLGEMNADQLWETTMSPA 591 Query: 595 LK 596 + Sbjct: 592 TR 593 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 3/261 (1%) Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + + + R + + + E L SK+ + + Sbjct: 370 LALTLIKKMQRASQAREAARKAREDARKGKAKGKSEKILSGKLASAQSKDARKKELYLVE 429 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + + V N E N+ +L ++ + ++H Sbjct: 430 GDSAGGSAKQGRDSRYQAILPLRGKVLNTEKASIANIEKNEELNTIIHALGAGVGANFHA 489 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNR-IEENYLTILSLICNGDKI 714 + ++ + + + +F +Y + + + L L + G +I Sbjct: 490 EDASYHKVIIMTDADTDGAHI--QTLLLTFFYRYMKELIEKGMVYIALPPLYKLQKGKEI 547 Query: 715 KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD 774 + LD I KG ++QRYKGLGEMNA QLWETT++P TR+L++V I DA A+ Sbjct: 548 QYAWSDEELDRIRKTFPKGYTLQRYKGLGEMNADQLWETTMSPATRTLIQVTIDDAFLAE 607 Query: 775 DLFSRLMGDEVEPRREFIQEN 795 S LMGD+ + RR +I++N Sbjct: 608 KRVSVLMGDKADVRRTWIEDN 628 >gi|254393574|ref|ZP_05008707.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] gi|197707194|gb|EDY53006.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064] Length = 686 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 280/658 (42%), Positives = 388/658 (58%), Gaps = 22/658 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+AD I V Sbjct: 30 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHADTIQV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + E A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 89 TILADGGVRVVDNGRGIPVGIVPSENKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ PL +TGT VTF DIF + Sbjct: 149 VVNALSTKVAVDVKTDGYRWTQDYKLGVPTAPLARNEETA-ETGTSVTFWADGDIFETTE 207 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230 ++++TL R +E++FLN + ++L D+R + R +T +Y+GGI Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLTLTDERESAKATSGADTAEEAEQEQVRTVTYYYEGGIV 267 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + + I I+ +S+++AM+WN Y E V F N I +GGT Sbjct: 268 DFVKYLNSRKGELIHPTVIDIEAEDKERMLSVEIAMQWNSQYTEGVYSFANTIHTHEGGT 327 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK KL Sbjct: 328 HEEGFRAALTGLVNRYARDKKLLREKDDNLSGEDIREGLTAIISVKLGEPQFEGQTKTKL 387 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E ++ V+ V++ L+ W + +P EA IV+K + A R AAR+ARDLTRRKG+L+ Sbjct: 388 GNTEAKTFVQKVVHEHLTDWFDRNPNEAADIVRKAIQAQTARVAARKARDLTRRKGLLES 447 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR DK Sbjct: 448 ASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARIDK 507 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L + E+ LI+A GTGI +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 508 ILQNTEVQALISAFGTGIHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 566 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPLY I G+ + D L+ + + DS Sbjct: 567 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQQGKRIREDSIQRFKGLGE 626 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 627 MNAEELRVTTMDVEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 684 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 600 DALVELGKQQGKRIREDSIQRFKGLGEMNAEELRVTTMDVEHRVLGQVTLDDAAQADDLF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 660 SVLMGEDVEARRSFIQRNAKDVRFLDI 686 >gi|167755161|ref|ZP_02427288.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402] gi|167705211|gb|EDS19790.1| hypothetical protein CLORAM_00666 [Clostridium ramosum DSM 1402] Length = 641 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 287/639 (44%), Positives = 407/639 (63%), Gaps = 11/639 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L D V D+GRG+PT H + GIS E I T LHAGGKF YKVSGGL Sbjct: 60 ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + R+G+ Y F N G L + G + + TGT VTF Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDS-DITGTIVTFKADK 178 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++YDTL+ R+REL+FLN +++SL D+R+ R+ +Y+GGI+ +V+Y+++ Sbjct: 179 IIFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHEYYYEGGIKEYVAYINK 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ + I ++ + I+I++ M++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 239 NKTPIHEEIIYVEDMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRLALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y + KKD+ ++ GDD REG T+++S+K PDP++ QTK KL ++EVR + + Sbjct: 299 VINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ L +L E+P AKIIV K + A+ R AA++AR++TRRK VL++++LPGKLADCS Sbjct: 359 IISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D + E+F+VEGDSAGGSAK GR R QAILPLRGKILNVE++R +K+L + EI ++I Sbjct: 419 SKDASECEIFIVEGDSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R + L+ GF+Y + Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + GK Y +E L+D + G ++ L + Sbjct: 538 PPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWET-----TM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + +E +I + E + + Sbjct: 593 DPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 6/128 (4%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISM 736 + +F +Y R + + L D+ L L T G K S+ Sbjct: 515 LMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAK-YSI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L ++ + +A +AD +F LMG++VEPRREFIQEN+ Sbjct: 574 QRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQENA 633 Query: 797 LPS-ALDI 803 LDI Sbjct: 634 KYVTDLDI 641 >gi|241896016|ref|ZP_04783312.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC 33313] gi|241870747|gb|EER74498.1| DNA topoisomerase IV subunit B [Weissella paramesenteroides ATCC 33313] Length = 675 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 251/672 (37%), Positives = 383/672 (56%), Gaps = 15/672 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + + Y DSI +L+GL+AV+KRP MYIG TD GLHH++YE+ DNA+DE+L GY D I Sbjct: 2 TKKNDYSDDSITVLEGLEAVRKRPGMYIGSTD-GKGLHHLVYEIFDNAVDEALAGYGDEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ + + TV D+GRG+P +H G EVI+T LHAGGKF Q YK SGGLHGVG Sbjct: 61 NVTIHENNAITVVDHGRGMPVGMHSS-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS L + I R+G Y+ FIN G D L G +GT VTF P S IFS Sbjct: 120 SSVVNALSSDLVVTIVRDGVKYQEHFINGGHPDGTLKKIGKTKETSGTTVTFKPDSKIFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +N++TL RLRE +FL +V+I+L D+R + + T + GI+AFV YL+ K Sbjct: 180 TTIYNFNTLAERLRESAFLLRNVKITLTDERPGQEQTETYHFPEGIKAFVDYLNED-KDT 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + +G + ++++ ++NDG+ E ++ F NN+ DGGTH +GLRSA T+ Y Sbjct: 239 LGDIMYFEGIAQGVEVEVSAQYNDGFSETMMSFVNNVRTPDGGTHEAGLRSAWTKAFNEY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 + K+ +++ G D REG ++V+S+++P+ +F QTKEKL + E R++V++ + Sbjct: 299 ARRVNLLKEKDKNLEGSDVREGLSAVISLRIPENILQFEGQTKEKLGTPEARTIVDNIIT 358 Query: 362 DGLSAWLEEHPLEAKIIVKKV--LDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + L +L E+ ++ +++K + R + +K L GKL Sbjct: 359 EQLGFYLMENGEFSQSLIRKSLRAREAREAARKARDEARSGKKKGKSERLLSGKLTPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ ++ELFLVEGDSAGGSAKQGR+R+ QAILPLRGK+LN E+A+ ++ ++EI T+I Sbjct: 419 KNANQNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLQDIMKNEEISTIIY 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 +G G+G F + Y KIIIMTDAD DGAHI+TLLLTFF++ M LI G +YI P Sbjct: 479 TIGAGVG-PEFKVADANYDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIDAGKVYIALP 537 Query: 540 PLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 PLY + + + ++Y + L ++ F + ++ +D Sbjct: 538 PLYMLRKGKGKQQKIEYAWTDSQLATAEETIGRGYTLQRFKGLGEMNAEQLWATTMDPTQ 597 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 + +K + + + G + I ++A L + + +++ + Sbjct: 598 RTLIRVKIDDAMLAEKRVTTLM--GDKVEPRRKWIESNVAFNLVEEGDTLLDEAAQGEEL 655 Query: 656 SINNSDILVKRI 667 + + + I Sbjct: 656 DSQSKEFVAPII 667 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ +++ + I + + N D ++ + Sbjct: 456 VLNTEKAKLQDIMKNEEISTIIYTIGAGVGPEFKVADANYDKIIIMTDADDDGAHIQTLL 515 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I + ++ + L G + KI L +IGR G ++ Sbjct: 516 LTFFYKYMRPLIDAGKVYIALPPLYMLRKGKGKQQKIEYAWTDSQLATAEETIGR-GYTL 574 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW TT++P R+L+RVKI DA A+ + LMGD+VEPRR++I+ N Sbjct: 575 QRFKGLGEMNAEQLWATTMDPTQRTLIRVKIDDAMLAEKRVTTLMGDKVEPRRKWIESN 633 >gi|149177758|ref|ZP_01856358.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] gi|148843408|gb|EDL57771.1| DNA gyrase subunit B [Planctomyces maris DSM 8797] Length = 643 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 239/574 (41%), Positives = 343/574 (59%), Gaps = 10/574 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + Y AD I++L+GL+AV++RPSMYIG D GLHH+++E++DN++DE L A Sbjct: 5 AKTTGAKKYSADDIEVLEGLEAVRRRPSMYIGGVD-IRGLHHLLWEIVDNSVDEYLAKEA 63 Query: 62 DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTL+ DG SC+V DNGRGIP D H + SA E+I+T LHAGGKF+ K+Y SGGL Sbjct: 64 DTIIVTLHKDGASCSVKDNGRGIPVDKHSKTKKSALELILTTLHAGGKFSDKNYARSGGL 123 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS+ + + R+G+ Y + G P+ GTE+ F P D Sbjct: 124 HGVGSSVVNALSTEMVATVVRDGHQYVQRYKKGKPTTPVKKVKP-FRGHGTEIYFRPDDD 182 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY--LDR 238 IF FN DT++ L +++F++ ++I+ D+ E + + GI ++ ++ Sbjct: 183 IFRRVHFNADTIRQHLEDVAFIHGGLKITFRDEVKKETH--ELSHPEGIRGYLEKLTQEQ 240 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 KKP+ + + NI +++ +RW D E + + N I GGTH SGLRS + + Sbjct: 241 QKKPVHEQLFFAEKEDKNIRVEMVLRWTDATDEQIRSYVNGIRTHAGGTHESGLRSGIAK 300 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + +Y++ K ++ DD REG ++S+ DP F QTKEKL + EV VE Sbjct: 301 AVKNYMDVHN-IKHKGLAITTDDIREGVLCLISVFHNDPMFQGQTKEKLNNPEVSGFVEG 359 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGKLADC 417 V L WL ++P A +V +++ A+ R A+R A+ RRK V + ++LPGKL DC Sbjct: 360 IVRPLLETWLNQNPSIADAVVGRIVLAARARMASRDAQKEVRRKSVTNRKSTLPGKLLDC 419 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 P++SELFLVEG SAGG+A GR QA+LPLRGK+LN E K++ +QEI L Sbjct: 420 RSNKPEESELFLVEGLSAGGTAAMGRDSRIQAVLPLRGKVLNTESLAISKIMGNQEIKDL 479 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 + LGTGIG +F+I LRY++II++ DAD DG HI TLLLTFFFR M LI G L++ Sbjct: 480 VETLGTGIG-PNFEIMNLRYNRIILLMDADSDGYHISTLLLTFFFRHMRELIRQGKLFLA 538 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE 571 +PPLY I G Y +D+ E+ + + + + Sbjct: 539 QPPLYCIKVGNEKHYAQDDAQKEEIVESLGANRK 572 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%) Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIG-R 731 L + F + R ++ + + +K + + S+G Sbjct: 513 HISTLLLTFFFRHMRELIRQ--GKLFLAQPPLYCIKVGNEKHYAQDDAQKEEIVESLGAN 570 Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 + + R+KGLGEM AS+L ETTL+P R LL+V I +AD F++L G + R + Sbjct: 571 RKYEIGRFKGLGEMTASELKETTLDPKHRVLLKVDIDSQLEADATFAQLFGKDASLRYDL 630 Query: 792 IQENSLPSALDI 803 I + ++ + DI Sbjct: 631 IMQEAIEAD-DI 641 >gi|324039430|dbj|BAJ78468.1| DNA gyrase subunit B [Alcanivorax sp. ST-TA] Length = 476 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 295/478 (61%), Positives = 374/478 (78%), Gaps = 4/478 (0%) Query: 32 IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91 IGDTD +GLHHM++EV+DN+IDE+L G+ I V ++ D S ++ DNGRGIPT++H+EE Sbjct: 1 IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEE 60 Query: 92 GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151 G+SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSVVNALS LKL I+R G ++E + Sbjct: 61 GVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYN 120 Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211 +G+ PL V G + +GT V F PS + FS F+YD L RLRELSFLNS V+I L+ Sbjct: 121 HGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLM 179 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYH 270 D+RS + Y+GG+ AFVSYL+ +K PL Q + D I++++AM+WND Y Sbjct: 180 DERSGDE--DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQ 237 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++K KK+K S GDD REG T+V+ Sbjct: 238 ENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVI 297 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+PDP+FSSQTK+KLVSSEV+S VE + D +L E+P EA+ IV+K++DA+ RD Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARD 357 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR++TRRKG LDIA LPGKLADC ++DP SEL++VEGDSAGGSAKQGR R+NQAI Sbjct: 358 AARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAI 417 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 LPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I KLRYH+IIIMTDADV Sbjct: 418 LPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMTDADV 475 >gi|313635495|gb|EFS01732.1| DNA gyrase, B subunit [Listeria seeligeri FSL N1-067] Length = 528 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 268/531 (50%), Positives = 368/531 (69%), Gaps = 10/531 (1%) Query: 1 MSDNIQNS------SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAID 54 MS+ + Y+ D IQ+L+GL+AV+KRP MYIG T + GLHH+++E++DNAID Sbjct: 1 MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTS-QRGLHHLVWEIVDNAID 59 Query: 55 ESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSY 114 E+L G+ I +T+ D S TV DNGRGIPT ++++ G EVI T LHAGGKF Y Sbjct: 60 EALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVEVIFTVLHAGGKFGGGGY 119 Query: 115 KVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVT 174 KVSGGLHGVG SVVNALS++L++ + REG Y F G + + G + GT V Sbjct: 120 KVSGGLHGVGASVVNALSTYLEVYVHREGKKYYQRFERGDVVMDMEEQGET-DYRGTIVH 178 Query: 175 FLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P IFS F++DTL+ R REL+FLN + IS+ DKR Y+GGI ++V Sbjct: 179 FTPDPQIFSETTEFDFDTLRTRTRELAFLNRGLTISIEDKREEHKVRKDFHYEGGIRSYV 238 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L++ K + + PI ++G RD+I ++++M++N G+ N++ F NNI +GGTH SG + Sbjct: 239 EHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSSNIISFANNIHTYEGGTHESGFK 298 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALTR I Y ++ K ++ G+D REG T+++SIK PDP+F QTK KL +SE R Sbjct: 299 TALTRVINDYARRNKVFKDSDDNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEAR 358 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 S+ + ++ L+ ++ E+P AK IV+K + AS R AA+RAR++ R+ L+I+SLPGK Sbjct: 359 SITDKLFSEALNKFMMENPDVAKKIVEKGVVASRARLAAKRAREVARKSSGLEISSLPGK 418 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS R+P+ SEL++VEGDSAGGSAKQGR R QAILP+RGKILNVE+AR D++L+++E Sbjct: 419 LADCSSRNPEISELYIVEGDSAGGSAKQGRDRLFQAILPIRGKILNVEKARLDRILANEE 478 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 I T TA+GTG G D FD++K RYHK+IIMTDADVDGAHIRTLLLT F+R Sbjct: 479 IRTXFTAMGTGFGGD-FDVSKSRYHKLIIMTDADVDGAHIRTLLLTLFYRY 528 >gi|219121994|ref|XP_002181340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407326|gb|EEC47263.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 727 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 257/617 (41%), Positives = 370/617 (59%), Gaps = 30/617 (4%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + ++ SY A I +LKGLD V+KRP MYIG T G GLHH+++EV+DN +DE+L G+A Sbjct: 58 ASSVAAQSYGAGQITVLKGLDPVRKRPGMYIGST-GPDGLHHLVWEVVDNCVDEALAGHA 116 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ----KSYKVS 117 +T T++ DGS TV+D+GRGIPTDLH E G SA E ++T LHAGGKF+ YKVS Sbjct: 117 TFVTTTIHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVS 176 Query: 118 GGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS-----AGNDTGTE 172 GGLHGVG+SVVNALS ++ +++ R +Y+M F G+ PL + +GT Sbjct: 177 GGLHGVGISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTS 236 Query: 173 VTFLPSSDIFSVQDFNYDTL------QHRLRELSFLNSSVQISLIDKR--SPEPREITMF 224 VTFLP +F + D + R+ E+++LN+ + ++L D+R R + Sbjct: 237 VTFLPDLKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFY 296 Query: 225 YKGGIEAFVSYLDRHKKPLMQ------SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFT 277 + GG+ + L R K PL Q + +D+ S D A+RW+ D Y E++L F Sbjct: 297 HAGGLAEYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFC 356 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 NNI +DGG+H+ GL++ LTR + ++S +K+ ++ G+ REG T+++S+ + +P Sbjct: 357 NNIRTRDGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEP 416 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 F QTK +L + EVR V+S ++ L+ + P I K A AA+ ARD Sbjct: 417 EFEGQTKGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARD 476 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 + RRK +L LPGKLADC+ RDP++SE+F+VEGDSA GSAKQGR R QAILPLRGKI Sbjct: 477 MVRRKTLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKI 536 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 LN+ERA +++ + E+ LI+ALG G+ FD LRY +I+IMTDADVDGAHIR LL Sbjct: 537 LNIERAATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLL 596 Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLIN-QSLSEEI 572 LTFF+R L+ NG +YI +PPLY ++ R + Y ++ ++ + + Sbjct: 597 LTFFYRYQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQALAAGKVS 656 Query: 573 ELFCDSKGVISKNDLRN 589 G + L + Sbjct: 657 LQRFKGLGEMMPEQLWS 673 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 5/79 (6%) Query: 727 FSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + G+ +S+QR+KGLGEM QLW TT++P+ R++L+V + DAS AD S LMGD V Sbjct: 650 LAAGK--VSLQRFKGLGEMMPEQLWSTTMDPERRTMLQVTVNDASMADQTLSILMGDTVA 707 Query: 787 PRREFIQENS--LPS-ALD 802 PR+EFI + L LD Sbjct: 708 PRKEFISTQAETLRVDDLD 726 >gi|283457093|ref|YP_003361656.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] gi|283133071|dbj|BAI63836.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18] Length = 713 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 274/667 (41%), Positives = 381/667 (57%), Gaps = 34/667 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q Y A I +L+GL+AV+KRP MYIG T E GLHH++YEV+DN++DE+L GYA I Sbjct: 45 QQHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGYASKID 103 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG+ V D+GRGIP D H E S EV+MT LHAGGKF Y VSGGLHGVG+ Sbjct: 104 VTIQADGAVRVEDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYSVSGGLHGVGI 163 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS+ + + R+G + +SF N G+ D PL G + TGT TF P +IF Sbjct: 164 SVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRK-GEPSDKTGTIQTFYPDPEIFET 222 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREI----------------------- 221 +F+++TL+ R ++++FLN + I+L D+R + Sbjct: 223 VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRVHANAEGFT 282 Query: 222 --TMFYKGGIEAFVSYLDRH-KKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCF 276 T Y G+ +V +L+ K + + + + N+S+++AM+W Y E+V + Sbjct: 283 TVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGAYKESVYSY 342 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N I +GGTH G R+ALT + Y ++ + ++ G+D REG T+V+SIK+ + Sbjct: 343 ANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKISE 402 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL +SE +S + VND L W +P AK IV++ + A+ R AAR+AR Sbjct: 403 PQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQARIAARKAR 462 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 + TRRKG+L+ +S+PGKL DCS +DP SE++LVEGDSAGGSA QGR QAILPLRGK Sbjct: 463 ETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRDPNTQAILPLRGK 522 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERAR D+ LS+ EI +ITA GTGIG D FDI K RYHKI++M DADVDG HI TL Sbjct: 523 ILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDIEKARYHKIVLMADADVDGQHITTL 581 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575 LLT FR M LI G++Y+ +PPLY I + YV + ++ L + Sbjct: 582 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAAKNLRLPK 641 Query: 576 CDSKGVISKNDLRNFIDDA-LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 + ++ + +D + + I V E + + Sbjct: 642 DNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFI 701 Query: 635 ASKLANR 641 + Sbjct: 702 QQNAKDI 708 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++P R+LL+VK+ DA+ AD +FS LMG++VE RREFIQ+N Sbjct: 645 IQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFIQQN 704 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 705 AKDIRFLDI 713 >gi|227893710|ref|ZP_04011515.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047] gi|227864570|gb|EEJ71991.1| DNA topoisomerase IV subunit B [Lactobacillus ultunensis DSM 16047] Length = 648 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 264/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KAHTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F N G L G + TGT +TF P IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFKNGGHPVGTLKCLGKTKDKTGTTITFKPDDSIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDEREPE-HHDIFKYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ A +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFAGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F++N Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVG-TEFNVNDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 537 Query: 542 YGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + +QY +E L + ++ F + ++ + +D ++ Sbjct: 538 YRLQKGRGKKSKVQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMDPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ + +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVNDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G K K+ L + +GR G S+ Sbjct: 514 LTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKSKVQYAWTDEELAEDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW+TT++P++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWQTTMDPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|16082085|ref|NP_394515.1| DNA gyrase subunit B [Thermoplasma acidophilum DSM 1728] gi|10640369|emb|CAC12183.1| probable DNA gyrase, subunit B (gyrB) [Thermoplasma acidophilum] Length = 641 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 261/596 (43%), Positives = 372/596 (62%), Gaps = 18/596 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ IQIL+GL AV+K P MYIG TD GLHH++YEV+DN++DES+ GY I Sbjct: 1 MTEDNYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGYCSRI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + DGS TV D+GRGIP D+H + E+++T LH+G KF++K YK++GGLHGVG Sbjct: 60 YVVMGSDGSITVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKITGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGNDTGTEV 173 V VVNALS L +KR+G IY F GI + L D GT + Sbjct: 120 VHVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPDHGTII 179 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P DIF +F+Y+T+ RL +LS+LN + I+ +D+ S RE + ++GG+ V Sbjct: 180 KFYPDPDIFETTEFSYETILARLTDLSYLNPQLTITFLDEASG--REDVLHHEGGLIELV 237 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L K+ LM P+ ++ D+ ++ ++ + E ++ F NNI +GGTH++G Sbjct: 238 RHLSEGKEVLM-DPLYLKEEVDSHMVEFSLLYTTDVQETLMSFVNNISTPEGGTHVAGFH 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 L+R I Y + K + + GDD +EG +VL +KM +P+F QTK KL +S VR Sbjct: 297 QGLSRAIQDYARSNNKIKGVE-DITGDDVKEGVIAVLHVKMQNPQFEGQTKSKLGNSSVR 355 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V+S + + ++E +P A +I+ +VL A+ R+A+R+A++L RRK L+ LPGK Sbjct: 356 GIVQSVTSKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEGGGLPGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS DP SEL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A K++ ++ Sbjct: 416 LADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEI 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I L+ A+GTG+ +D + KLRY KIIIMTDADVDGAHIRTLLLTFFFR SLI NG Sbjct: 476 IHDLVVAIGTGVKEDL-NPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLIENGN 534 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 ++ +PPLY I +G++++YV +E E + I G ++ L Sbjct: 535 VFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPN-AIIQRFKGLGEMNPEQLWE 589 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 15/236 (6%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 +S+ I + D + + +E+A V E Sbjct: 418 DCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEIIH 477 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 ++ V++ + + LN + K + + D R + +F + Sbjct: 478 DLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRT-------------LLLTFFFR 524 Query: 689 YKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 Y R + I G ++ + + +QR+KGLGEMN Sbjct: 525 YARSLIENGNVFFAEPPLYRIQKGQNVRYVYSDEEKEQVSREFGPNAIIQRFKGLGEMNP 584 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 QLWETT+NP TR L++V I DA +A+ +F+ LMG++VEPRR+FI+EN++ + +D Sbjct: 585 EQLWETTMNPKTRKLVQVTIEDAEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640 >gi|325066318|ref|ZP_08124991.1| DNA gyrase subunit B [Actinomyces oris K20] Length = 675 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 282/649 (43%), Positives = 385/649 (59%), Gaps = 35/649 (5%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MSD N Y A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L Sbjct: 1 MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT+ DG VSDNGRGIP D H E EV+MT LHAGGKF Y VSG Sbjct: 60 GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177 GLHGVG+SVVNALS+ + ++R+G ++ MSF + G L V G A + TGT TF P Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATDSTGTTQTFYP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217 IF DF+Y+TL+ R ++++FLN ++I+L D+ Sbjct: 179 DPTIFETVDFDYETLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVG 238 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270 R + Y+ G+ +V++L++ KK I + G +IS+++AM+W Y Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQSLGENHSISLEIAMQWTSAYS 298 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V + N I +GGTH G R+ALT + Y K+ ++ GDD REG T+V+ Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVI 358 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++E R+ V+ V L WL+ HP +A+ I+ K A+ R Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARL 418 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+ TRRKGVL+ AS+PGKL DCS ++ SE+F+VEGDSAGGSA GR E+QAI Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAI 478 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 +P+RGKILNVE+AR D+ LSS I +LITA GTGIG+D FDI KLRY KI+IM DADVDG Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDIAKLRYGKIVIMADADVDG 537 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI +G YI PPLY + + ++ D L+ + Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEK 597 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 L D I + ++D + + + +++A + Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644 Score = 143 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 8/88 (9%) Query: 724 DTIFSIG-RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G KG +QRYKGLGEMN +LWETT++P TR L +V + +A+ AD+ Sbjct: 588 DKLLAAGQEKGRRLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADET 647 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 F+ LMGD+VE RR FIQ N+ LDI Sbjct: 648 FAILMGDDVEQRRSFIQRNASDVRFLDI 675 >gi|161507592|ref|YP_001577546.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571] gi|160348581|gb|ABX27255.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus DPC 4571] Length = 653 Score = 539 bits (1388), Expect = e-150, Method: Composition-based stats. Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 8 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 66 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S T+ D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 67 VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 125 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F G L G + TGT +TF P + IFS Sbjct: 126 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 185 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 186 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 243 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 244 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 303 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 304 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 363 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 364 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 484 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 542 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ +QY +E L + ++ F + ++ + ++ ++ Sbjct: 543 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 602 Query: 598 DKLIK 602 +K Sbjct: 603 LIRVK 607 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I +I + L G K +I L ++G S+Q Sbjct: 519 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 578 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+V RR++I++N Sbjct: 579 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEKN 636 >gi|261406137|ref|YP_003242378.1| DNA topoisomerase IV subunit B [Paenibacillus sp. Y412MC10] gi|329924920|ref|ZP_08279867.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5] gi|261282600|gb|ACX64571.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. Y412MC10] gi|328940304|gb|EGG36633.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. HGF5] Length = 659 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 263/601 (43%), Positives = 368/601 (61%), Gaps = 25/601 (4%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 S YDAD IQ+L+GL AV+KRP MYIG T SGLHH+++E++DNA+DE L Y I Sbjct: 17 TNRSGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCSRI 75 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 +TL+ DGS TV DNGRGIPT +H + GI +V+ T LHAGGKF YK SGGLHGVG Sbjct: 76 EITLHKDGSATVYDNGRGIPTGMH-KTGIPTPQVVFTILHAGGKFGGSGYKKSGGLHGVG 134 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVT 174 SV NALS WL++ I REG I+ F G L V G+ N TGT++T Sbjct: 135 ASVTNALSEWLEVEIYREGKIHRQRFEYWQDKKGKEHVGEPVTGLEVLGNT-NKTGTKIT 193 Query: 175 FLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P + +F+ NYDTL RL+E++FLNS ++I L D+RS FY+GG FV Sbjct: 194 FKPDARVFTSGTHLNYDTLAERLQEIAFLNSGLRIVLKDERSG--NGEEFFYEGGASQFV 251 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ K L I +D+I +++A+++N GY E + F N+IP + GGTH +G + Sbjct: 252 QFLNEGKDVLH-DVIHFYAEKDDIEVEIALQYNAGYTETLASFVNSIPTRGGGTHETGFK 310 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +A TR + Y K+ K+ +++ G+D REG +V+S+KM + F QTK++L S+ R Sbjct: 311 TAYTRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEVEFVGQTKDQLGSASAR 370 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPG 412 S V+S V + + +LEE+P A+ ++KK + AS R+AAR+ARD R K + ++L G Sbjct: 371 SAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARDEMRSGKKRSESSNLGG 430 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KL +D ++ELF+VEGDSAGGSAKQGR + QAILPL+GK +N E+++ +L + Sbjct: 431 KLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADILKND 490 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 E +++A+G GIG F Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G Sbjct: 491 EYRAIVSAIGAGIG-TEFTAGDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDEG 549 Query: 533 FLYIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLR 588 +Y+ +PPLY I + ++++Y +E L +YL G ++ L Sbjct: 550 RVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKE--FKNFELQRYKGLGEMNPEQLW 607 Query: 589 N 589 Sbjct: 608 E 608 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 11/295 (3%) Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 D G+ + + + + + L + + ++ ++ + Sbjct: 362 DQLGSASARSAVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREA-ARKARDEMRSGK 420 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 SE L SK+ R + K + N E Sbjct: 421 KRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 480 Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 + ++ + ++ I + +N ++ + + +F Sbjct: 481 SKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHI--QVLLLTFF 538 Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPC------SLLDTIFSIGRKGISMQRYK 740 +Y + + K+ L + + K +QRYK Sbjct: 539 YRYMKPLIDEGRVYLAQPPLYKIASKSGKLETVRYAWTDEQLANYLKEF--KNFELQRYK 596 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GLGEMN QLWETT+NP+TR+LL+V+I DA++A+ S LMGD+V+PR+ +I EN Sbjct: 597 GLGEMNPEQLWETTMNPETRTLLQVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 651 >gi|329944735|ref|ZP_08292814.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529871|gb|EGF56761.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 675 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 282/649 (43%), Positives = 386/649 (59%), Gaps = 35/649 (5%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MSD N Y A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L Sbjct: 1 MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT+ DG VSDNGRGIP D H E EV+MT LHAGGKF Y VSG Sbjct: 60 GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHRPTVEVVMTILHAGGKFGGGGYAVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177 GLHGVG+SVVNALS+ + ++R+G ++ MSF + G L V G A DTGT TF P Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATEDTGTTQTFYP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217 IF DF+Y+TL+ R ++++FLN ++I+L D+ Sbjct: 179 DPSIFETVDFDYETLRRRFQQMAFLNKGLRITLTDERVGVQDAGDEITGDDSAPDAPEVG 238 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270 R + Y+ G+ +V++L++ KK I + G +IS+++AM+W Y Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELVHPEIIDFEAEQTLGETHSISLEIAMQWTSSYS 298 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V + N I +GGTH G R+ALT + Y K+ ++ GDD REG T+V+ Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDRGLLKERDDNLTGDDIREGLTAVI 358 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++E R+ V+ V L WL+ HP +A+ I+ K A+ R Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYGQLGDWLDSHPSDARAIITKASQAAAARL 418 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+ TRRKGVL+ AS+PGKL DCS + ++SE+F+VEGDSAGGSA GR E+QAI Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKIAEESEIFIVEGDSAGGSAVGGRDPEHQAI 478 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 +P+RGKILNVE+AR D+ LSS I +LITA GTGIG+D FD+ KLRY KI+IM DADVDG Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDLTKLRYGKIVIMADADVDG 537 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI +G YI PPLY + + ++ D L+ + Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAVGQDK 597 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 L D I + ++D + + + +++A + Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644 Score = 143 bits (362), Expect = 9e-32, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LWETT++P TR L +V + +A+ AD+ F+ LMGD+VE RR FIQ N Sbjct: 607 IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADETFAILMGDDVEQRRSFIQRN 666 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 667 ASDVRFLDI 675 >gi|260101486|ref|ZP_05751723.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus DSM 20075] gi|260084700|gb|EEW68820.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus DSM 20075] Length = 653 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 8 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 66 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S T+ D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 67 VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 125 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F G L G + TGT +TF P + IFS Sbjct: 126 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 185 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 186 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 243 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 244 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 303 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 304 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 363 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 364 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 484 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 542 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ +QY +E L + ++ F + ++ + ++ ++ Sbjct: 543 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 602 Query: 598 DKLIK 602 +K Sbjct: 603 LIRVK 607 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I +I + L G K +I L ++G S+Q Sbjct: 519 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 578 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 579 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 636 >gi|323466444|gb|ADX70131.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus helveticus H10] Length = 648 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 260/605 (42%), Positives = 375/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S T+ D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F G L G + TGT +TF P + IFS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDNGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 537 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ +QY +E L + ++ F + ++ + ++ ++ Sbjct: 538 YRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I +I + L G K +I L ++G S+Q Sbjct: 514 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAMKRGYSLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 574 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|104773993|ref|YP_618973.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514009|ref|YP_812915.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423074|emb|CAI97795.1| DNA topoisomerase IV, subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093324|gb|ABJ58477.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125698|gb|ADY85028.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 643 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 261/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 1 MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 60 NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS++K+ + R+G YE F N G L G+ TGT +TF P IFS Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +NY+T+Q R+RE +FL V+ +L D+R+P Y GIE+FV+YL+ K Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVAYLNEG-KGT 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +GS+D + I+ A +++D Y EN + F NN+ DGG+H G RS TR Y Sbjct: 237 IGKVFYFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + LS +L E+ A+ +VKK A R+AA++ARD +R K L GKL R Sbjct: 357 EKLSYYLLENGEWAQDLVKKAQRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN +RA+ + ++EI T+I Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI PP Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I++ ++ Y +E ++Y ++ F + + ++ ++ Sbjct: 536 LYRISKKQTNLYAWTDEERDEYEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595 Query: 601 IK 602 ++ Sbjct: 596 VR 597 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ ++ I + +N D ++ + Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739 + +F +Y R + + + + D KG ++QR+ Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEYEKKVGKGYALQRF 570 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 KGLGEMNA QLWETT+NP++R L+RV+I DA A+ + LMGD+ RR++I+EN Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626 >gi|238854274|ref|ZP_04644618.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4] gi|282851154|ref|ZP_06260521.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1] gi|311110716|ref|ZP_07712113.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22] gi|238833085|gb|EEQ25378.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 202-4] gi|282557686|gb|EFB63281.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri 224-1] gi|311065870|gb|EFQ46210.1| DNA topoisomerase IV, B subunit [Lactobacillus gasseri MV-22] Length = 652 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 269/601 (44%), Positives = 372/601 (61%), Gaps = 14/601 (2%) Query: 1 MSD-NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ N SSYD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G Sbjct: 1 MAKTNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAG 59 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 Y I VT++ D S TV D GRG+PT +H GI EVI+T LHAGGKF +K+Y+ SGG Sbjct: 60 YGKEINVTIHKDNSITVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGG 118 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS+LK+R+ R+G YE F N G L G + GT +TF P Sbjct: 119 LHGVGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPD 178 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 + IFS +NY+T+Q R+RE +FL V+ +L D+R PE + Y+ GI++FVSYL+ Sbjct: 179 ATIFSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNE 237 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K M G ++ I ++ A ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 238 D-KDTMGDVFYFSGKQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTK 296 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV Sbjct: 297 AFNDYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVV 356 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415 +S V + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 357 DSIVYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI Sbjct: 417 PAQSRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +Y Sbjct: 477 TMIHTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVY 535 Query: 536 IIKPPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFI 591 I PPLY + +G ++Y +E L + + ++ F + + + Sbjct: 536 IALPPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTM 595 Query: 592 D 592 + Sbjct: 596 N 596 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 561 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 620 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 621 MGDKVAPRRKWIDEN 635 >gi|229916010|ref|YP_002884656.1| DNA topoisomerase IV subunit B [Exiguobacterium sp. AT1b] gi|229467439|gb|ACQ69211.1| DNA topoisomerase IV, B subunit [Exiguobacterium sp. AT1b] Length = 655 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 264/597 (44%), Positives = 378/597 (63%), Gaps = 18/597 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS ++ N Y+ D+IQ+L+GL AV+KRP MYIG TD GLHH++YE++DNAIDE+L G+ Sbjct: 1 MSTDLFN--YNEDAIQVLEGLTAVRKRPGMYIGSTD-HRGLHHLVYEIVDNAIDEALAGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ + + TV D+GRG+PT +H G EVI T LHAGGKF Q YK SGGL Sbjct: 58 GGQIDVTIHKNDAITVRDHGRGMPTGMHAS-GKPTPEVIFTVLHAGGKFGQGGYKTSGGL 116 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSS + + I R+G ++E +F + G+ L+ TG TGT V F P + Sbjct: 117 HGVGASVVNALSSKVVVTIHRDGKVFEQTFADGGVPQTTLIETGKT-RQTGTSVYFKPDA 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS +N+DTL RLRE +FL + I+L D+R+ + + T Y+ GI FV YL+ Sbjct: 176 TIFSTTTYNHDTLAERLRESAFLLKGLTITLTDERTEK--QETFHYEEGIAEFVQYLNDD 233 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K L + +G+ + I I+LA ++ D Y ENVL F NN+ +DGGTH G ++A+TR Sbjct: 234 KATLHP-IVYFEGTENEIEIELAFQFTDAYSENVLSFVNNVRTRDGGTHEVGAKTAMTRI 292 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + Y K+ K+ +++ G D REG T ++S+++P+ +F QTK KL S E R+ + Sbjct: 293 MNEYARKNGLLKEKDKNLDGGDVREGLTLIVSVRIPEEFLQFEGQTKSKLGSPEARASAD 352 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 S + L+ +LEE+P A +++KK + A+ R+AAR+AR+ R K + L GKL Sbjct: 353 SVMAKQLTIFLEENPQMATMLIKKAIRAAQAREAARKAREEARNGKKKKRSSILNGKLTP 412 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 + ++ K+ELFLVEGDSAGGSAKQGR R QAILPLRGK++N E+++ ++ ++EI T Sbjct: 413 ATSKNAAKNELFLVEGDSAGGSAKQGRDRTFQAILPLRGKVINSEKSKLQDIMKNEEINT 472 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 +I A+G G+G FD++ + KIIIMTDAD DGAHI+ LLLTFFFR M L+ G +++ Sbjct: 473 IIHAIGAGVG-HDFDLDDCNFDKIIIMTDADTDGAHIQVLLLTFFFRYMRPLVEAGRVFV 531 Query: 537 IKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY I+ + + Y DE++LE + I G ++ + L Sbjct: 532 ALPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGY-ILQRYKGLGEMNADQLWE 587 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 453 VINSEKSKLQDIMKNEEINTIIHAIGAGVGHDFDLDDCNFDKIIIMTDADTDGAHIQVLL 512 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP---CSLLDTIFSIGRKGISMQ 737 F F + + R+ + + K + L+ + + +KG +Q Sbjct: 513 LTFFFRYMRPLVEAGRVFVALPPLYRISKGKGKSEQFDYAWDEDALEKLVKVYKKGYILQ 572 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NPDTR+L+RV + DA+ AD S LMGD V RRE+I+EN Sbjct: 573 RYKGLGEMNADQLWETTMNPDTRTLIRVTVDDAAVADKRVSVLMGDNVTHRREWIEEN 630 >gi|13541372|ref|NP_111060.1| DNA gyrase subunit B [Thermoplasma volcanium GSS1] gi|14324756|dbj|BAB59683.1| DNA gyrase subunit b [Thermoplasma volcanium GSS1] Length = 641 Score = 538 bits (1387), Expect = e-150, Method: Composition-based stats. Identities = 262/600 (43%), Positives = 370/600 (61%), Gaps = 22/600 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+D+ +YD+ IQIL+GL AV+K P MYIG TD GLHH++YEV+DN++DES+ G+ Sbjct: 1 MTDD----NYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGF 55 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V + DGS V D+GRGIP D+H + E+++T LH+G KF++K YK++GGL Sbjct: 56 CSNIYVKIGKDGSVLVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKITGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAG-----------NDT 169 HGVGV VVNALSS L +KR+G+IY F GI L Sbjct: 116 HGVGVHVVNALSSKLIAVVKRDGHIYYEVFEKGIPKEGLKTVEDKSVLEKFGIDIKYPGH 175 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT + F P +IF +F+ +T+ R+ +L++LN + I+L D+R+ T+ Y+GGI Sbjct: 176 GTIIKFYPDPEIFETTEFSKETILARVTDLAYLNPQLTITLEDERTGSL--ETLHYEGGI 233 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 V +L K L+ P+ + D+ ++ A + E + + NNI +GGTH+ Sbjct: 234 VELVKHLSEG-KNLIVDPLYWREEVDHYIVEFAFTYTTDVQEILQSYVNNISTPEGGTHV 292 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G L+R I Y + K + GDD +EG +VL IKM DP+F QTK KL + Sbjct: 293 AGFHQGLSRAIQDYARSNGKIKGVD-DITGDDVKEGVIAVLHIKMQDPQFEGQTKAKLGN 351 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 S+VR +V+S + + +LE +P A +I+ +VL A+ R+A+R+A++L RRK L+ Sbjct: 352 SKVRGIVQSITSKFVKTFLETNPHIADLILSRVLSAAAAREASRKAKELVRRKSALEGGG 411 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADCS DP +EL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A K++ Sbjct: 412 LPGKLADCSSNDPNNTELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVV 471 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ I L+ A+GTG+ +D + KLRY KIIIMTDADVDGAHIRTLLLTFFFR SLI Sbjct: 472 ENEIIKDLVVAIGTGVKEDI-NPRKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLI 530 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 NG +Y +PPLY I +G+ ++YV EE + I + I G ++ L + Sbjct: 531 ENGNVYFAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPN-AIIQRFKGLGEMNPEQLWD 589 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 2/183 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E ++ V + + + I ++ + ++ V + Sbjct: 459 ILNVEKASDMKVVENEIIKDLVVAIGTGVKEDINPRKLRYGKIIIMTDADVDGAHIRTLL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F F I + + L I G ++ D + +QR+K Sbjct: 519 LTFFFRYARSLIENGNVY-FAEPPLYRIQKGQDVRYVYTEEEKDKLSIEFGPNAIIQRFK 577 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS- 799 GLGEMN QLW+TT+NP TR L++V I DA +A+ +FS LMG++VEPRR FI+EN++ + Sbjct: 578 GLGEMNPEQLWDTTMNPKTRKLVQVTIQDAEEAERIFSILMGEKVEPRRRFIEENAVYAE 637 Query: 800 ALD 802 +D Sbjct: 638 NID 640 >gi|239942665|ref|ZP_04694602.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 15998] gi|239989124|ref|ZP_04709788.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 11379] Length = 690 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 281/664 (42%), Positives = 387/664 (58%), Gaps = 25/664 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD Sbjct: 28 EVPETSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADT 86 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGV Sbjct: 87 IDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 146 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS+ + + +K +G + + G+ PL A +TGT VTF DIF Sbjct: 147 GVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTTVTFWADGDIFE 205 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMF 224 +++++TL R +E++FLN + + L D+R R +T Sbjct: 206 TTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSADAAEPAEAEAARSVTYH 265 Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281 Y+ GI FV Y R + QS I I+ + +S+++AM+WN Y E V F N I Sbjct: 266 YENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIH 325 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GGTH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F Sbjct: 326 THEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEG 385 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRR Sbjct: 386 QTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRR 445 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE Sbjct: 446 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 505 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF Sbjct: 506 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 564 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FR M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 565 FRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIREDSIQR 624 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 N + + + QA D E S + A Sbjct: 625 FKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 684 Query: 642 LNFI 645 + F+ Sbjct: 685 VRFL 688 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K I S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 604 DALVALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLF 663 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 664 SVLMGEDVEARRSFIQRNAKDVRFLDI 690 >gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group] Length = 753 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 262/622 (42%), Positives = 369/622 (59%), Gaps = 35/622 (5%) Query: 1 MSDNIQNSSYDADSIQ------------------------ILKGLDAVKKRPSMYIGDTD 36 M + Y A ++Q +L+ LD V+ RP MYIG T Sbjct: 80 MQEKRVAGEYTAANVQHILWIPYFHGHILWIPYFDGGSWSVLEALDGVRTRPGMYIGST- 138 Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 G GLHH++YE+LDNA+DE+ GYA + V L+ D S +V+DNGRGIPTD+H + S Sbjct: 139 GSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCV 198 Query: 97 EVIMTRLHAGGKFNQKS--YKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154 E ++T +HAGGKF Y VSGGLHGVG+SVVNALS L++ + R+G Y ++ G Sbjct: 199 ETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGK 258 Query: 155 LDNPLVVT---GSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISL 210 L + + GT + F P IF+ F+++T+ R+REL+FLN + I+L Sbjct: 259 AITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIAL 318 Query: 211 IDKRSP-EPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DG 268 + + + Y GG+ +V +L+ KK L PI + D I++D++++W D Sbjct: 319 TKEEDDLQVQHNEYCYAGGLVEYVKWLNTDKKSLH-DPIAFRKEMDGITVDVSLQWCSDS 377 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y + VL + N+I DGGTH+ GL+++LTR I ++ +KS K S+ G+ REG T Sbjct: 378 YSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTC 437 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 ++++K+P+P F QTK +L + EVR +VE V + L+ +LE HP I+ K L+A Sbjct: 438 IIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKA 497 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 AA+RAR+L R K VL +SLPGKLADC+ DP++SE+F+VEGDSAGGSAKQGR R+ Q Sbjct: 498 ALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQ 557 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILN+ER + ++EI LI ALG G+ + F+ LRYHKI+I+TDADV Sbjct: 558 AILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADV 617 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSL 568 DGAHIRTLLLTFFFR +L G +Y+ PPLY + RGK Y D+ L++ + Sbjct: 618 DGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPT 677 Query: 569 SEE-IELFCDSKGVISKNDLRN 589 + G + L Sbjct: 678 NASYHIQRFKGLGEMMPAQLWE 699 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAE--KSEKSWHGSINNSDILVKRIARGVQEQFVLE 678 + N E E + ++ N + + K E ++ I++ V + Sbjct: 566 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVIL-TDADVDGAHIRT 624 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG---PCSLLDTIFSIGRKGIS 735 F F + I + + L++T + Sbjct: 625 LLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNA--SYH 682 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEM +QLWETT++P+ R L ++K+ DA++A+ +FS LMG V+ R++ IQ Sbjct: 683 IQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNA 742 Query: 796 SLPSA---LDI 803 + LDI Sbjct: 743 ASMVNLEHLDI 753 >gi|326772839|ref|ZP_08232123.1| DNA gyrase, B subunit [Actinomyces viscosus C505] gi|326637471|gb|EGE38373.1| DNA gyrase, B subunit [Actinomyces viscosus C505] Length = 675 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 281/649 (43%), Positives = 384/649 (59%), Gaps = 35/649 (5%) Query: 1 MSDN--IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MSD N Y A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L Sbjct: 1 MSDQDATVNHDYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALA 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D I VT+ DG VSDNGRGIP D H E EV+MT LHAGGKF Y VSG Sbjct: 60 GYCDHIEVTILADGGVRVSDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLP 177 GLHGVG+SVVNALS+ + ++R+G ++ MSF + G L V G A + TGT TF P Sbjct: 120 GLHGVGISVVNALSTRVDTEVRRQGFVWRMSFADGGRPITEL-VKGEATDSTGTTQTFYP 178 Query: 178 SSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--------------------RSPE 217 IF DF+Y+ L+ R ++++FLN ++I+L D+ Sbjct: 179 DPTIFETVDFDYEMLRRRFQQMAFLNKGLRITLTDERLGVQDAGDEIAGDDSAPDAPEVG 238 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPL--MQSPIRIQ-----GSRDNISIDLAMRWNDGYH 270 R + Y+ G+ +V++L++ KK I + G +IS+++AM+W Y Sbjct: 239 FRTDSYCYEHGLRDYVAFLNKSKKAELIHPEIIDFEAEQSLGENHSISLEIAMQWTSAYS 298 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 E+V + N I +GGTH G R+ALT + Y K+ ++ GDD REG T+V+ Sbjct: 299 ESVHTYANTINTTEGGTHEEGFRTALTTLVNKYARDKGLLKERDDNLTGDDIREGLTAVI 358 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+ +P+F QTK KL ++E R+ V+ V L WL+ HP +A+ I+ K A+ R Sbjct: 359 SVKLSEPQFEGQTKTKLGNTEARTFVQQTVYAQLGDWLDSHPGDARAIITKASQAAAARL 418 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR+ TRRKGVL+ AS+PGKL DCS ++ SE+F+VEGDSAGGSA GR E+QAI Sbjct: 419 AARKAREATRRKGVLESASMPGKLRDCSSKNAADSEIFIVEGDSAGGSAVGGRDPEHQAI 478 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDG 510 +P+RGKILNVE+AR D+ LSS I +LITA GTGIG+D FDI KLRY KI+IM DADVDG Sbjct: 479 MPIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDIAKLRYGKIVIMADADVDG 537 Query: 511 AHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI +G YI PPLY + + ++ D L+ + Sbjct: 538 QHIATLLLTLLFRYMRPLIEHGHTYIAMPPLYRLKWSNAEHEFAYSDAERDKLLAAGQEK 597 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 L D I + ++D + + + +++A + Sbjct: 598 GRRLPKDGG--IQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADA 644 Score = 143 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 8/88 (9%) Query: 724 DTIFSIG-RKGI------SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G KG +QRYKGLGEMN +LWETT++P TR L +V + +A+ AD+ Sbjct: 588 DKLLAAGQEKGRRLPKDGGIQRYKGLGEMNDHELWETTMDPTTRILKQVTLDEAADADET 647 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 F+ LMGD+VE RR FIQ N+ LDI Sbjct: 648 FAILMGDDVEQRRSFIQRNASDVRFLDI 675 >gi|148377999|ref|YP_001256875.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2] gi|148292045|emb|CAL59437.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2] Length = 655 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 242/597 (40%), Positives = 367/597 (61%), Gaps = 14/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N+SY+A SI++L+GL+AV+ RP MYIG GLHH+++E++DN++DE + GYA+ Sbjct: 11 NQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ DG + DNGRGIP H + G+S E ++T LHAGGKF+ +YKVSGGLHG Sbjct: 70 FIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSD 180 VG SVVNALSS + +KREG+ Y F + G PL V + ++TGT++ F P Sbjct: 130 VGASVVNALSSNFHVWVKREGHTYYAHFQHGGQTVQPLTVINNIDPSETGTKIKFHPDFT 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I F+ + + + +++L ++ ++D+ + +Y+GG+ +V+ L+ + Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEINNTS--EEFYYEGGLIDYVNELNEGQ 247 Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 K + S I +G S I++++A+++ + + +TNNI +GGTH G Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVTIEGGTHEQGFFD 307 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 AL+R I SY K+ K + + +D +G +++S+K PDP F QTK KL + + R+ Sbjct: 308 ALSRLINSYALKNGLIKNENERLNKEDTSKGLVAIVSVKHPDPIFEGQTKGKLNNKDART 367 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413 V + L + +E+P++A+ I+ K L + R AA A + + + IASLPGK Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAEAVQANMGNNSIASLPGK 427 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LA+C+ ++ + EL++VEG+SAGGSAK GR R QAILPLRGK++N E+ +++LS+ E Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNAE 487 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +LITALGTG+ + FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R LI GF Sbjct: 488 IISLITALGTGLNES-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +YI +PPLY I + K + Y ++ + L + + +I G + L Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSLNQDSKITIQRYKGLGEMDPEQLWE 603 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 42/84 (50%), Positives = 63/84 (75%), Gaps = 3/84 (3%) Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 S+L ++ + I++QRYKGLGEM+ QLWETT+NP+ R + +V+I DA++AD +F+ L Sbjct: 574 SILQSLNQDSK--ITIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+V PRREFI++N+ +DI Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655 >gi|291320739|ref|YP_003516004.1| DNA gyrase subunit B [Mycoplasma agalactiae] gi|290753075|emb|CBH41051.1| DNA gyrase subunit B [Mycoplasma agalactiae] Length = 655 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 242/597 (40%), Positives = 364/597 (60%), Gaps = 14/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + +N+SY+A SI++L+GL+AV+ RP MYIG GLHH+++E++DN++DE + GYA+ Sbjct: 11 NQSKNNSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ DG + DNGRGIP H + G+S E ++T LHAGGKF+ +YKVSGGLHG Sbjct: 70 FIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSD 180 VG SVVNALSS + +KREG+ Y F N G PL V ++TGT++ F P Sbjct: 130 VGASVVNALSSDFHVWVKREGHTYYAHFQNGGQTVQPLTVINDIDPSETGTKIKFHPDFS 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I F+ + + + +++L ++ ++D+ + +Y+GG+ +V+ L+ + Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEINNTS--EEFYYEGGLIDYVNELNEGQ 247 Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 K + S I +G S I++++A+++ + + +TNNI +GGTH G Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVALQYTSTFQPRITTYTNNIVTIEGGTHEQGFFD 307 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 AL+R I SY K+ K + + +D +G +++S+K PDP F QTK KL + + R+ Sbjct: 308 ALSRLINSYALKNGLIKSENERLNKEDTSKGLVAIVSVKHPDPIFEGQTKGKLNNKDART 367 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413 V + L + +E+P++A+ I+ K L + R AA A + + IASLPGK Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQANMGNNSIASLPGK 427 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LA+C+ ++ + EL++VEG+SAGGSAK GR R QAILPLRGK++N E+ +++LS+ E Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNTE 487 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +LITALGTG+ + FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R LI GF Sbjct: 488 IISLITALGTGLNES-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 +YI +PPLY I + K + Y ++ + L + + + G + L Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQSLNQDSKFTIQRYKGLGEMDPEQLWE 603 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 41/84 (48%), Positives = 62/84 (73%), Gaps = 3/84 (3%) Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 S+L ++ + ++QRYKGLGEM+ QLWETT+NP+ R + +V+I DA++AD +F+ L Sbjct: 574 SILQSLNQDSK--FTIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+V PRREFI++N+ +DI Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655 >gi|27530064|dbj|BAC53887.1| DNA gyrase B subunit [Tatlockia micdadei] Length = 466 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 295/469 (62%), Positives = 373/469 (79%), Gaps = 3/469 (0%) Query: 34 DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93 DTD +GLHHM++EV+DN+IDE+L GY I+V ++ D S TV D+GRGIP D+HKEEG Sbjct: 1 DTDDGTGLHHMVFEVVDNSIDEALAGYCHEISVIIHADESITVKDDGRGIPVDIHKEEGR 60 Query: 94 SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153 SAAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS L L I+R G ++E + NG Sbjct: 61 SAAEVIMTILHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELHLTIRRNGKVHEQHYRNG 120 Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 + D PL +TG A N TGT+V F PS++ FS +F+YD L RLRELSFLNS V+I L D+ Sbjct: 121 VPDAPLAMTGEA-NTTGTQVWFKPSANTFSNIEFHYDILAKRLRELSFLNSGVRIHLYDE 179 Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273 R+ + + T Y+GGI+AFV +L+R+K P+M + G RDNIS++L+M+WND + E + Sbjct: 180 RTQK--QDTFCYEGGIKAFVEHLNRNKTPIMPVVFSLSGERDNISVELSMQWNDSFQETI 237 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 CFTNNIPQ+DGGTHL+G R+ALTR + SY+E +KK K + GDD REG T+VLS+K Sbjct: 238 FCFTNNIPQRDGGTHLAGFRAALTRTLNSYIENEGYAKKAKITTTGDDAREGLTAVLSVK 297 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 +PDP+FSSQTK+KLVSSEV++VVES V++ L+ +L E+P AK IV K++DA+ R+AAR Sbjct: 298 VPDPKFSSQTKDKLVSSEVKAVVESLVSEKLNDFLLENPTVAKSIVGKIIDAARAREAAR 357 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR++TRRKG LDIA LPGKLADC E+DP SEL++VEGDSAGGSAKQGR R+ QAILPL Sbjct: 358 KAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRDRKFQAILPL 417 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 +GKILNVE+ARFDKMLSSQE+ TLITALG GIG D +D +K+RYH+III Sbjct: 418 KGKILNVEKARFDKMLSSQEVATLITALGCGIGPDEYDPDKIRYHRIII 466 >gi|116629641|ref|YP_814813.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323] gi|116095223|gb|ABJ60375.1| DNA topoisomerase IV subunit B [Lactobacillus gasseri ATCC 33323] Length = 661 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 268/598 (44%), Positives = 369/598 (61%), Gaps = 13/598 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N SSYD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ GY Sbjct: 13 TNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAGYGK 71 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT++ D S TV D GRG+PT +H GI EVI+T LHAGGKF +K+Y+ SGGLHG Sbjct: 72 EINVTIHKDNSITVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGGLHG 130 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS+LK+R+ R+G YE F N G L G + GT +TF P + I Sbjct: 131 VGSSVVNALSSYLKVRVVRDGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDATI 190 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS +NY+T+Q R+RE +FL V+ +L D+R PE Y+ GI++FVSYL+ K Sbjct: 191 FSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPE-HHDKFLYEDGIKSFVSYLNED-K 248 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 M G ++ I ++ A ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 249 DTMGDVFYFSGKQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFN 308 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+S Sbjct: 309 DYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSI 368 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418 V + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 369 VYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQ 428 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 429 SRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMI 488 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI Sbjct: 489 HTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIAL 547 Query: 539 PPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G ++Y +E L + + ++ F + + ++ Sbjct: 548 PPLYKLQKGNGAKAKIKYAWTDEELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 570 EELSEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 630 MGDKVAPRRKWIDEN 644 >gi|71893463|ref|YP_278909.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J] gi|71851590|gb|AAZ44198.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J] Length = 639 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 247/591 (41%), Positives = 359/591 (60%), Gaps = 12/591 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A I V Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D ++ D+GRGIPT +H + ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 61 TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184 VVNALS L++ IKR+G ++ FIN G L V + + +GT++ F P +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F T+ +RL+ ++L +I T ++GGI +V L ++ K L Sbjct: 181 NSFQLLTIFNRLKNTAYLTR--RIQFELIDKRSDFSQTFCFEGGISDYVEELSKNFKKLT 238 Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I + ++D I ++ A+ + H + +TNNI +GG+H +GL L R + Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + + D ++G +++SIK +P F QTK KL + EVR V Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +AK I+ + L A AA+ AR+ +RK DI +LPGKLADC + Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCGTK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + + +EL++VEG+SAGGSAK GR R QAILPLRGK++N +R + +K+L ++EI ++ITA Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTG+G FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR LI GF+YI PP Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 LY I++GK + Y +E+ E YL G ++ L Sbjct: 538 LYKISQGKKIFYAYNEKEKEKYLTEILKENSKFTIQRYKGLGEMNPEQLWE 588 Score = 141 bits (355), Expect = 6e-31, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 8/108 (7%) Query: 696 RIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTL 755 +I + + + +T + + + ++QRYKGLGEMN QLWETT+ Sbjct: 540 KISQGKKIFYAYNEKEKEKYLT------EILKENSK--FTIQRYKGLGEMNPEQLWETTM 591 Query: 756 NPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 +P TR + +V+I D +F LMG +V R+ FI+EN+ + +DI Sbjct: 592 DPQTRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639 >gi|291446126|ref|ZP_06585516.1| gyrase B [Streptomyces roseosporus NRRL 15998] gi|291349073|gb|EFE75977.1| gyrase B [Streptomyces roseosporus NRRL 15998] Length = 682 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 281/664 (42%), Positives = 387/664 (58%), Gaps = 25/664 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD Sbjct: 20 EVPETSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADT 78 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGV Sbjct: 79 IDVTILPDGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGV 138 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 GVSVVNALS+ + + +K +G + + G+ PL A +TGT VTF DIF Sbjct: 139 GVSVVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTTVTFWADGDIFE 197 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMF 224 +++++TL R +E++FLN + + L D+R R +T Sbjct: 198 TTEYSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSADAAEPAEAEAARSVTYH 257 Query: 225 YKGGIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIP 281 Y+ GI FV Y R + QS I I+ + +S+++AM+WN Y E V F N I Sbjct: 258 YENGIVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIH 317 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GGTH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F Sbjct: 318 THEGGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEG 377 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRR Sbjct: 378 QTKTKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRR 437 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KG+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE Sbjct: 438 KGLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVE 497 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF Sbjct: 498 KARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFL 556 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FR M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 557 FRFMKPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIREDSIQR 616 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 N + + + QA D E S + A Sbjct: 617 FKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKD 676 Query: 642 LNFI 645 + F+ Sbjct: 677 VRFL 680 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K I S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 596 DALVALGKQNGKRIREDSIQRFKGLGEMNAEELRVTTMDIDHRVLGQVTLDDAAQADDLF 655 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 656 SVLMGEDVEARRSFIQRNAKDVRFLDI 682 >gi|237733416|ref|ZP_04563897.1| DNA gyrase subunit B gyrB [Mollicutes bacterium D7] gi|229383451|gb|EEO33542.1| DNA gyrase subunit B gyrB [Coprobacillus sp. D7] Length = 641 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 286/639 (44%), Positives = 407/639 (63%), Gaps = 11/639 (1%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ SYD IQ+L+GL+AV+KRP MYIG T GLHH+++E++DN+IDE+L GY Sbjct: 1 MSEEKVEHSYDESDIQVLEGLEAVRKRPGMYIG-TTSIRGLHHLVWEIVDNSIDEALAGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L D V D+GRG+PT H + GIS E I T LHAGGKF YKVSGGL Sbjct: 60 ASHIRVILKDDDVVQVIDDGRGMPTGTHAKTGISTVETIFTVLHAGGKFGGGGYKVSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ + R+G+ Y F N G L + G + + TGT VTF Sbjct: 120 HGVGASVVNALSEWLEVNVHRDGHEYYQRFENGGKPAGELKIIGDS-DITGTIVTFKADK 178 Query: 180 DIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IF ++YDTL+ R+REL+FLN +++SL D+R+ R+ +Y+GGI+ +V+Y+++ Sbjct: 179 IIFKEGTVYDYDTLRQRIRELAFLNKGLRLSLEDQRNGVDRKHEYYYEGGIKEYVAYINK 238 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +K P+ + I ++ + I+I++ M++NDGY N+ F NNI +GGTH G R ALTR Sbjct: 239 NKTPIHEEIIYVEDMQQEITIEVGMQYNDGYQSNIYSFCNNINTHEGGTHEEGFRLALTR 298 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 I +Y + KKD+ ++ GDD REG T+++S+K PDP++ QTK KL ++EVR + + Sbjct: 299 VINNYAKSKGLLKKDEEALSGDDVREGLTAIISVKHPDPQYEGQTKTKLGNAEVRKIASN 358 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 ++ L +L E+P AKIIV K + A+ R AA++AR++TRRK VL++++LPGKLADCS Sbjct: 359 IISASLDKFLLENPDTAKIIVDKAIVAARARMAAKKAREMTRRKNVLEVSNLPGKLADCS 418 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +D + E+F+VEG+SAGGSAK GR R QAILPLRGKILNVE++R +K+L + EI ++I Sbjct: 419 SKDASECEIFIVEGNSAGGSAKMGRDRRIQAILPLRGKILNVEKSRLEKILGNAEIRSMI 478 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA GTGIG++ F+++KLRYHKI+IMTDADVDG HIR L+LTF +R + L+ GF+Y + Sbjct: 479 TAFGTGIGEE-FNLDKLRYHKIVIMTDADVDGGHIRILMLTFLYRYLRPLVEGGFVYAAQ 537 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDLRNFIDDALKI 597 PPLY + GK Y +E L+D + G ++ L + Sbjct: 538 PPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAKYSIQRYKGLGEMNAEQLWET-----TM 592 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 D + +E +I + E + + Sbjct: 593 DPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQE 631 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 71/128 (55%), Gaps = 6/128 (4%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFSIGRKGISM 736 + +F +Y R + + L D+ L L T G K S+ Sbjct: 515 LMLTFLYRYLRPLVEGGFVYAAQPPLYLLKHGKDEYYCYSDEELDDLKTKIGEGAK-YSI 573 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEMNA QLWETT++P+ R L ++ + +A +AD +F LMG++VEPRREFIQEN+ Sbjct: 574 QRYKGLGEMNAEQLWETTMDPEKRILNQIDLDEAMEADMIFDMLMGEKVEPRREFIQENA 633 Query: 797 LPS-ALDI 803 LDI Sbjct: 634 KYVTDLDI 641 >gi|328466147|gb|EGF37306.1| DNA topoisomerase IV subunit B [Lactobacillus helveticus MTCC 5463] Length = 648 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 261/605 (43%), Positives = 377/605 (62%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S T+ D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSVTIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F G L G + TGT +TF P + IFS+ Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFEKGGHPIGTLKCLGKTKDPTGTTITFKPDAMIFSI 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERDPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL +S+ RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTSQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVGAE-FNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKIYIALPPL 537 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ +QY +E L + ++ F + ++ + ++ ++ Sbjct: 538 YRLQKGRGKKAQIQYAWTDEELAEDEKAIKRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGAEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I +I + L G K +I L ++G S+Q Sbjct: 514 LTFFYRYMRPMIEKGKIYIALPPLYRLQKGRGKKAQIQYAWTDEELAEDEKAIKRGYSLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 574 RFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|297623604|ref|YP_003705038.1| DNA topoisomerase [Truepera radiovictrix DSM 17093] gi|297164784|gb|ADI14495.1| DNA topoisomerase (ATP-hydrolyzing) [Truepera radiovictrix DSM 17093] Length = 642 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 277/591 (46%), Positives = 380/591 (64%), Gaps = 11/591 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++Y ADSI++LKGL+ V+KRP+MY+ G T G G H ++ E++DNAIDE+L G+AD + V Sbjct: 3 TTYTADSIKVLKGLEGVRKRPAMYVQGGT-GVDGYHQLLTEIIDNAIDEALAGHADTVEV 61 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 LN DGS TV+DNGRGIP + K EG A EVI T LHAGGKF+ +YKVSGGLHGVG S Sbjct: 62 VLNPDGSATVADNGRGIPVGMMKREGRHAIEVIFTELHAGGKFDSDAYKVSGGLHGVGSS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN-DTGTEVTFLPSSDIFSVQ 185 VVNALS +L+ +K G ++ + F G + P+ V G DTG++VTFLP DIF Sbjct: 122 VVNALSVFLEAEVKSGGKLHRIRFDRGEVTEPVHVIGKVKPGDTGSKVTFLPDHDIFKEV 181 Query: 186 D-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F+Y ++ RLREL+FL + V+I+L D+R EP+ KGG+ AF L L Sbjct: 182 KAFDYARIRRRLRELAFLTAGVKITLEDRRGAEPKREVFQEKGGVAAFALTLAEG-NYLY 240 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 P+ I+G D+I +++ Y + +L + N I +DGGTHL+G ++A TR + +Y Sbjct: 241 DKPVLIRGHADDIEVEVGFIHTGAYVQTILTYANMITNRDGGTHLTGFKTAYTRVLNNYA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 + KK + GDD EG + V+S+K+ DP+F SQ K KL++ E +S V+S V + L Sbjct: 301 KAKNLIKKGDPAPTGDDFLEGISCVVSVKLGDPQFESQAKVKLLNPEAQSAVQSVVYERL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 + +LEE+P AK I++K + A+ R+AAR+ARDL RR +D LPGKLADC DP Sbjct: 361 TEFLEENPKVAKAIIEKAVHAAKAREAARKARDLVRRANPIDNDELPGKLADCQSEDPSV 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SEL++VEG+SAGGSAK GR R QAILPLRGK+LNVE+A+ K+L + EI +I A+G G Sbjct: 421 SELYIVEGNSAGGSAKGGRERRFQAILPLRGKVLNVEKAQLSKVLKNAEIRAMIAAIGAG 480 Query: 485 IGQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 + FD+ +RYH+IIIM DADVDG+HIRTLLLTFF+ M LI G+LY+ +PP Sbjct: 481 LEGTGDDAHFDLESVRYHRIIIMADADVDGSHIRTLLLTFFYNYMRPLIDAGYLYLAQPP 540 Query: 541 LYGIT--RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 LY + R K + YV D+ L+ L + G ++ +L Sbjct: 541 LYAVRFGREKDVTYVYDDADLQRLLAENKGRKYELQRFKGLGEMNPEELWA 591 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSL--LDTIFS 728 V + F + I + + L + G + +T L + + Sbjct: 508 VDGSHIRTLLLTFFYNYMRPLIDAGYLY-LAQPPLYAVRFGREKDVTYVYDDADLQRLLA 566 Query: 729 IGR-KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 + + +QR+KGLGEMN +LW TT+NP+TR L +V + DA A + F LMG EV P Sbjct: 567 ENKGRKYELQRFKGLGEMNPEELWATTMNPETRILKKVTVEDALDAKETFEVLMGTEVPP 626 Query: 788 RREFIQENSLPSALDI 803 RR FI+EN+ + LD+ Sbjct: 627 RRRFIEENAHLAQLDV 642 >gi|58337412|ref|YP_193997.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus NCFM] gi|227904045|ref|ZP_04021850.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC 4796] gi|58254729|gb|AAV42966.1| DNA topoisomerase IV subunitB [Lactobacillus acidophilus NCFM] gi|227868064|gb|EEJ75485.1| DNA topoisomerase IV subunit B [Lactobacillus acidophilus ATCC 4796] Length = 648 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 261/605 (43%), Positives = 376/605 (62%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 3 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGKEID 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S T+ D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 62 VTIHKDNSITIRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS++K+R+ R+G YE F N G L G + TGT +TF P +FS Sbjct: 121 SVVNALSSYMKVRVVRDGKAYEEEFQNGGHPVGTLKCLGKTSDPTGTTITFKPDDTVFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ L D+R+PE Y GI++FVSYL+ K + Sbjct: 181 TKYKYETIQERIRESAFLLKGVKFVLTDERTPE-HHDVFQYDDGIKSFVSYLNEG-KGTI 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 + +G +D + I+ + +++DGY EN++ F NN+ DGGTH SG RS TR Y Sbjct: 239 SNVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTGDGGTHESGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLSIK+P+ F QTK KL + + RS V+S V + Sbjct: 299 KKQGLLGKKDKNIDGSDYREGLSAVLSIKIPEELLEFEGQTKGKLGTPQARSAVDSLVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F+++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 479 GAGVG-TEFNVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEQGKVYIALPPL 537 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ +QY +E L + ++ F + ++ + ++ ++ Sbjct: 538 YRLQKGRGKNVEIQYAWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 5/179 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ + I ++ +N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIYTIGAGVGTEFNVDDSNYDKVIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKIT---GPCSLLDTIFSIGRKGISM 736 F + I ++ + L G ++I L + +GR G S+ Sbjct: 514 LTFFYRYMRPMIEQGKVYIALPPLYRLQKGRGKNVEIQYAWTDEELAEDEKKMGR-GYSL 572 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+V RR++I+EN Sbjct: 573 QRFKGLGEMNAEQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVAARRKWIEEN 631 >gi|296137759|ref|YP_003645002.1| DNA gyrase subunit beta [Tsukamurella paurometabola DSM 20162] gi|296025893|gb|ADG76663.1| DNA gyrase, B subunit [Tsukamurella paurometabola DSM 20162] Length = 688 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 255/620 (41%), Positives = 362/620 (58%), Gaps = 42/620 (6%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y ADSI+ L+GL+AV+KRP MYIG T G GLHHMI+EV+DN++DE++ G+A Sbjct: 9 KSGSGNYGADSIKQLEGLEAVRKRPGMYIG-TTGPRGLHHMIWEVVDNSVDEAMAGHATR 67 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 + V L DG V D+GRGIP +H + GI ++++T LHAGGKF+ +Y VSGGLHGV Sbjct: 68 VDVKLRADGGVEVIDDGRGIPVAMHAK-GIPTVQLVLTSLHAGGKFDSDAYAVSGGLHGV 126 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFI----NGILDNPLVVTGSAGNDTGTEVTFLPSS 179 G+SVVNALSS +++ I +G ++ +F ++ G TGT V F Sbjct: 127 GISVVNALSSRVEVEIDVDGFHWQQNFHWDDAKRDSVAEDLIKGEPTTRTGTTVRFWADP 186 Query: 180 DIF-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP---------------------- 216 +F ++++T+ RL+E++FLN + I+L D+R Sbjct: 187 KVFTETTHYDFETVSRRLQEMAFLNKGLTITLTDERPVAIEVPDEDITEEAPSAHEEDVA 246 Query: 217 --------EPREITMFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGSRDNISIDLAMRWN 266 + RE Y G+ +V +++ K P+ S I +G I++AM+WN Sbjct: 247 AALAEVAPKKRERIFHYPDGLVDYVKHINARTSKSPIHASIISFEGKEKGHEIEIAMQWN 306 Query: 267 DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGF 326 GY E+V F N I +GGTH G R+ALT + +Y + K+ + GDD REG Sbjct: 307 SGYSESVHTFANTINTHEGGTHEEGFRTALTGVVKAYAKDKKLVKEKDGELSGDDIREGL 366 Query: 327 TSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 +V+S+K+ +P+F QTK KL ++EV+S V+ + L W + +P +AK IV+K ++ Sbjct: 367 AAVISVKVAEPQFEGQTKTKLGNTEVKSFVQKVCREQLQFWFDSNPADAKTIVQKAAASA 426 Query: 387 MVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRE 446 R AAR+AR+L RRK DI LPGKLADC DP K E+++VEGDSAGGSAK GR Sbjct: 427 QARLAARKARELVRRKSATDIGGLPGKLADCRSNDPDKCEVYIVEGDSAGGSAKSGRDSM 486 Query: 447 NQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDA 506 QAILP+RGKI+NVE+AR DK+L + E+ ++ITA GTGI D FDI KLRY KI++M DA Sbjct: 487 YQAILPIRGKIINVEKARIDKVLKNTEVQSIITAFGTGI-HDEFDIAKLRYKKIVLMADA 545 Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY--GITRGKSLQYVKDEESLEDYLI 564 DVDG HI TLLLT FR M L+ +G +Y+ +PPLY +G ++ + + L Sbjct: 546 DVDGQHISTLLLTLLFRFMRPLVEHGHVYLAQPPLYKLKWQKGAEPEFAYSDAERDALLA 605 Query: 565 NQSLSEEIELFCDSKGVISK 584 S + D Sbjct: 606 EGLKSGKKINKDDGIQRYKG 625 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +LL G+K I+ +QRYKGLGEMNA +LWETT++P R L +V + DA+ AD+L Sbjct: 602 ALLAEGLKSGKK-INKDDGIQRYKGLGEMNAKELWETTMDPTVRVLKQVTLDDAAAADEL 660 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++V RR FI N+ LD+ Sbjct: 661 FSILMGEDVVARRSFIARNAKDVRFLDV 688 >gi|77414294|ref|ZP_00790453.1| DNA gyrase, B subunit [Streptococcus agalactiae 515] gi|77159673|gb|EAO70825.1| DNA gyrase, B subunit [Streptococcus agalactiae 515] Length = 577 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 257/527 (48%), Positives = 370/527 (70%), Gaps = 4/527 (0%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIG T E GLHH+++E++DN+IDE+L G+A I V + D S TV D+GRGIP Sbjct: 1 MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A E + T LHAGGKF YKVSGGLHGVG SVVNALS+ L +++ + G I Sbjct: 60 DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKI 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204 + + G++ N L + G + +GT V F P +IF+ F++D L R++EL+FLN Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++IS+ DKR + E Y+GGI ++V +++ +K+ + ++PI G D IS+++AM+ Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 + GY E V+ F NNI +GGTH G R+ALTR I Y +K+ K+++ ++ G+D RE Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+V+S+K P+P+F QTK KL +SEV + ++ + +L E+P AK IV+K + Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR++TR+K L+I++LPGKLADCS + + +ELF+VEGDSAGGSAK GR+ Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRN 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 DADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ G ++ Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIK 524 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I + I G + LDT +S GR ++QRYKGLGEM+ LWET ++P+ Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHXLWETXMDPE 575 Query: 759 T 759 T Sbjct: 576 T 576 >gi|300361706|ref|ZP_07057883.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] gi|300354325|gb|EFJ70196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus gasseri JV-V03] Length = 661 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 268/598 (44%), Positives = 369/598 (61%), Gaps = 13/598 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 N SSYD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ GY Sbjct: 13 TNKTTSSYDDSSIQILHGLEAVRKRPGMYIGSTDRH-GLNQLVYEIVDNSVDEAMAGYGK 71 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT++ D S TV D GRG+PT +H GI EVI+T LHAGGKF +K+Y+ SGGLHG Sbjct: 72 EINVTIHKDNSVTVQDFGRGMPTGMHAS-GIPTIEVILTVLHAGGKFTEKNYQTSGGLHG 130 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS+LK+R+ R G YE F N G L G + GT +TF P + I Sbjct: 131 VGSSVVNALSSYLKVRVVRNGQAYEEEFENGGHPIGTLKHLGKTKDKNGTTITFKPDATI 190 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FS +NY+T+Q R+RE +FL V+ +L D+R PE + Y+ GI++FVSYL+ K Sbjct: 191 FSTTTYNYETIQERIRESAFLLKGVKFTLTDEREPEHHDE-FLYEDGIKSFVSYLNED-K 248 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 M G ++ I ++ A ++NDGY EN + F NN+ DGG+H +G RS T+ Sbjct: 249 DTMGDVFYFSGQQNGIEVEFAGQYNDGYSENFVSFVNNVRTADGGSHEAGARSGFTKAFN 308 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y +K K + + G D REG ++VLS+K+P+ F QTK KL + + RSVV+S Sbjct: 309 DYAKKQGLLKNKDKGLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSVVDSI 368 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCS 418 V + LS +L E+ A+ +V+K A R+AA++ARD +R K L GKL Sbjct: 369 VYEQLSYYLMENGEFAQSLVQKAQKARDAREAAKKARDESRSGKKRRKKEILSGKLTPAQ 428 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 R+PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 429 SRNPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMI 488 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +G G+G D F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI Sbjct: 489 HTIGAGVGSD-FQIKDANYDKIIIMTDADTDGAHIQILLLTFFYRYMRPMVEAGRVYIAL 547 Query: 539 PPLYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 PPLY + +G ++Y +E L + + ++ F + + ++ Sbjct: 548 PPLYKLQKGNGAKAKIKYAWTDEELNEDSKDMGKGFALQRFKGLGEMNADQLWETTMN 605 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 41/75 (54%), Positives = 56/75 (74%), Gaps = 3/75 (4%) Query: 724 DTIFSIGR---KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 + + + KG ++QR+KGLGEMNA QLWETT+NP+TR+L+RVKI DA A+ + L Sbjct: 570 EELNEDSKDMGKGFALQRFKGLGEMNADQLWETTMNPETRTLIRVKIDDAQLAEKRVTTL 629 Query: 781 MGDEVEPRREFIQEN 795 MGD+V PRR++I EN Sbjct: 630 MGDKVAPRRKWIDEN 644 >gi|313678887|ref|YP_004056627.1| DNA gyrase subunit B [Mycoplasma bovis PG45] gi|312950233|gb|ADR24828.1| DNA gyrase, B subunit [Mycoplasma bovis PG45] Length = 655 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 248/597 (41%), Positives = 364/597 (60%), Gaps = 14/597 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +NSSY+A SI++L+GL+AV+ RP MYIG GLHH+++E++DN++DE + GYA+ Sbjct: 11 KKTENSSYNASSIRVLEGLEAVRVRPGMYIGTITD-KGLHHLVWEIVDNSVDECMAGYAN 69 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ DG + DNGRGIP H + G+S E ++T LHAGGKF+ +YKVSGGLHG Sbjct: 70 YIKITICKDGYIEIEDNGRGIPVAKHPQTGLSTVETVLTVLHAGGKFDSDAYKVSGGLHG 129 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSD 180 VG SVVNALSS L + +KREG+ Y F N G PL + N+TGT++ F P Sbjct: 130 VGASVVNALSSDLHVWVKREGHTYYAHFQNGGQTVQPLTIINDIEPNETGTKIKFYPDFS 189 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I F+ + + + +++L ++ ++D+ + +Y+GG+ +V+ L+ + Sbjct: 190 ILEKHPFSVEAITDHAKRIAYLTKGTRLVVVDEFNNTS--EEFYYEGGLIDYVNELNEGQ 247 Query: 241 KPLMQSPIRIQG------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRS 294 K + S I +G S I++++AM++ + + +TNNI +GGTH G Sbjct: 248 KLVHDSIIYAEGLYDSDKSGSKITVEVAMQYISTFQPRITTYTNNIVTIEGGTHEQGFFD 307 Query: 295 ALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRS 354 AL+R I SY K+ K D + +D +G +++SIK PDP F QTK KL + + R+ Sbjct: 308 ALSRLINSYALKNNLIKNDSERLNKEDTSKGLVAIVSIKHPDPIFEGQTKGKLNNKDART 367 Query: 355 VVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD-IASLPGK 413 V + L + +E+P++A+ I+ K L + R AA A + + IASLPGK Sbjct: 368 AVREILAPVLERYFDENPIDAREIINKCLQSRKSRLAAEAAAKAVQANMGNNSIASLPGK 427 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LA+C+ ++ + EL++VEG+SAGGSAK GR R QAILPLRGK++N E+ +++LS+ E Sbjct: 428 LANCTSKNAEICELYIVEGNSAGGSAKMGRDRNVQAILPLRGKVINAEKVSPERVLSNAE 487 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +LITALGTG+ + FDINKLRYHK+IIMTDADVDGAHIRTLLLTFF+R LI GF Sbjct: 488 IISLITALGTGLNET-FDINKLRYHKVIIMTDADVDGAHIRTLLLTFFYRYFRKLIEYGF 546 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEI-ELFCDSKGVISKNDLRN 589 +YI +PPLY I + K + Y ++ + L + +I G + L Sbjct: 547 IYIAQPPLYKIQQNKYIAYAYNDSQKDSILQELNQDSKITIQRYKGLGEMDPEQLWE 603 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 3/84 (3%) Query: 721 SLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 S+L + + I++QRYKGLGEM+ QLWETT+NP+ R + +V+I DA++AD +F+ L Sbjct: 574 SILQELNQDSK--ITIQRYKGLGEMDPEQLWETTMNPENRKMYQVQIDDAAKADWVFTTL 631 Query: 781 MGDEVEPRREFIQENSLPS-ALDI 803 MGD+V PRREFI++N+ +DI Sbjct: 632 MGDDVLPRREFIEKNAKFVQNIDI 655 >gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B] gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1] gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1] gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B] Length = 620 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 261/598 (43%), Positives = 387/598 (64%), Gaps = 6/598 (1%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIG T E GLHH+++E++DN+IDE+L G+A I V + D S TV D+GRGIP Sbjct: 1 MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A E + T LHAGGKF YKVSGGLHGVG SVVNALS+ L +++ + G + Sbjct: 60 DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204 + + G++ N L + G + +GT V F P +IF+ F++D L R++EL+FLN Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++IS+ DKR + E Y+GGI ++V +++ +K+ + ++PI G D IS+++AM+ Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 + GY E V+ F NNI +GGTH G R+ALTR I Y +K+ K+++ ++ G+D RE Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+V+S+K P+P+F QTK KL +SEV + ++ + +L E+P AK IV+K + Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR++TR+K L+I++LPGKLADCS + + +ELF+VEGDSAGGSAK GR+ Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAGGSAKSGRN 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ + S + + Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGV-KVGSEIKAYIQPGVNQ-EE 535 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + SK + + +DD + + + ++ A + Sbjct: 536 ELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I + I G + LDT +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+ N++ S LDI Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 620 >gi|184199651|ref|YP_001853858.1| DNA gyrase subunit B [Kocuria rhizophila DC2201] gi|183579881|dbj|BAG28352.1| DNA gyrase subunit B [Kocuria rhizophila DC2201] Length = 686 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 272/618 (44%), Positives = 380/618 (61%), Gaps = 43/618 (6%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 +++ Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 3 TEDSPQHEYGASDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGYC 61 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 D I VTL DG VSDNGRGIP D+H EG EV+MT LHAGGKF Y VSGGLH Sbjct: 62 DHIEVTLQADGGVRVSDNGRGIPVDMHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGLH 121 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSD 180 GVG+SVVNALS + ++R+G+++ MSF N G L V G A +TGT F P ++ Sbjct: 122 GVGISVVNALSRQVDTEVRRQGHVWRMSFANGGRPQGEL-VKGEATEETGTTQVFYPDAE 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------------ 222 IF DF+++TL+ R ++++FLN ++I+L D+R+ + Sbjct: 181 IFETVDFDFETLRARFQQMAFLNKGLRITLTDERASDETGEEIAGDTPSDASGPLEGQDG 240 Query: 223 -----------------MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGS----RDNISIDL 261 Y+ G+ +V++L+ KK + I +S++L Sbjct: 241 GTAGGDDAAAAGARQVVYCYEDGLLDYVTFLNSSKKADLIHQDVISLEVDDPDKKMSLEL 300 Query: 262 AMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDD 321 AM+W ++E+V + N I +GGTH G R+ALT I Y ++ + ++ G+D Sbjct: 301 AMQWTTAFNESVHTYANTINTHEGGTHEEGFRTALTTLINRYARENKLLRDKDDNLTGED 360 Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 REG T+V+SIK+ +P+F QTK KL +SE ++ V+ + + AWLE +P AK I++K Sbjct: 361 VREGLTAVISIKLSEPQFEGQTKTKLGNSEAKTFVQREMFELFGAWLERNPNPAKDIIRK 420 Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441 + AS R AAR+AR+ TRRKG+L+ +PGKL DCS +DP SE+++VEGDSAGGSA Q Sbjct: 421 AIYASQARLAARKARETTRRKGLLESGGMPGKLKDCSSKDPTLSEIYIVEGDSAGGSAVQ 480 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 GR +QAILPLRGKILNVERAR D+ LS+ E+ ++ITA G GIG D FDI+K RYHKI+ Sbjct: 481 GRDPAHQAILPLRGKILNVERARLDRALSNAEVQSMITAFGAGIG-DDFDIDKARYHKIV 539 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561 +M DADVDG HI TLLLT FR M LI +G++Y+ +PPLY I + ++ D Sbjct: 540 LMADADVDGQHITTLLLTLLFRFMRPLIEHGYVYLAQPPLYRIKWSNAPHDYVFSDAERD 599 Query: 562 YLINQSLSEEIELFCDSK 579 + + L+E L D+ Sbjct: 600 AALAKGLAENRRLPKDNG 617 Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LWETT++P+ R+LL+V + DA+ AD +FS LMG++VE RREFIQ+N Sbjct: 618 IQRYKGLGEMDYTELWETTMDPEHRTLLQVTMDDAAAADQIFSVLMGEDVESRREFIQQN 677 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 678 AKDIRFLDI 686 >gi|300173091|ref|YP_003772257.1| DNA topoisomerase IV subunit B [Leuconostoc gasicomitatum LMG 18811] gi|299887470|emb|CBL91438.1| DNA topoisomerase IV, B subunit [Leuconostoc gasicomitatum LMG 18811] Length = 690 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 265/684 (38%), Positives = 383/684 (55%), Gaps = 21/684 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGL Sbjct: 57 GHDIRVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L++ I R+G+ ++ FI G L G +GT+VTF P + Sbjct: 116 HGVGSSVVNALSESLQVTIVRDGHKWQEDFIKGGQPVGTLRDLGVTKEPSGTKVTFKPDA 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + YDTL RLRE +FL S V+ SL D+R R Y+ G+EAFV +L+ Sbjct: 176 TIFSATVYKYDTLSERLRESAFLMSGVKFSLTDERVKPKRVEEYHYEKGLEAFVGFLNEE 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + S + +G +D I++++A ++NDGY E +L F NN+ +DGGTH G R+A T+ Sbjct: 236 KET-IGSIMTFEGQQDGIAVEVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG +V+S+++P+ +F QTK KL + E R +V+ Sbjct: 295 FNEYARKVNLLKEKDKNLEGTDVREGLAAVISLRVPEQFLQFEGQTKGKLGTPEARGIVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415 + VN+ L +L E+ + +++K + A R+AAR+A T + L GKLA Sbjct: 355 AVVNETLGRFLMENGDFGQNLIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGKLA 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ + +ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI Sbjct: 415 PAQSKNAEHNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEIS 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI A+G G+G F + + K+IIMTDAD DGAHI+TLLLTFF++ M LI G +Y Sbjct: 475 TLIYAIGGGVG-TDFKVADTAFSKVIIMTDADDDGAHIQTLLLTFFYKYMKPLIEAGRVY 533 Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY + ++ + LE E+ F + + Sbjct: 534 IALPPLYRVKYASKKFEDKFAWTNDELETITNQNDARYELTRFKGLGE------MNAPLL 587 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 +D + + + + + + + L+ + Sbjct: 588 WETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIEANVHFTLDEAGSILDTV 647 Query: 653 WHGSINNSDILVKRIARGVQEQFV 676 N SDI K + V Sbjct: 648 EGYDSNASDIFEKVRNHEKTDSVV 671 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 49/62 (79%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + R+KGLGEMNA LWETT++P++R+L+RVKI DA A+ + LMGD+VEPRRE+I+ Sbjct: 571 YELTRFKGLGEMNAPLLWETTMDPESRTLIRVKIDDAVLAEKRVTTLMGDKVEPRREWIE 630 Query: 794 EN 795 N Sbjct: 631 AN 632 >gi|330718555|ref|ZP_08313155.1| DNA topoisomerase IV subunit B [Leuconostoc fallax KCTC 3537] Length = 708 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 255/587 (43%), Positives = 363/587 (61%), Gaps = 12/587 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++N+ Y++DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ D I Sbjct: 2 VKNNEYNSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGFGDEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGLHGVG Sbjct: 61 NVTIHENNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS L++ I REG+ +E F++ G L G TGT +TF P ++IFS Sbjct: 120 SSVVNALSESLQVTIVREGHKWEEDFVDGGKPVGTLRDLGKTKEHTGTILTFKPDANIFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + Y+TL RLRE +FL S V+ +L D+R R Y G+EAFV +L+ K Sbjct: 180 TTVYKYETLAERLRESAFLMSGVKFTLTDERVDPIRHEAYHYDKGLEAFVGFLNED-KGT 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + S + +G ++ I +D+A ++NDGY E +L F NN+ +DGGTH +G RSA T+ Y Sbjct: 239 IGSIMTFEGQQEGIIVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEAGFRSAWTKAFNEY 298 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 ++ K +++ G D REG ++V+S+++P+ +F QTK+KL + E R +V++ VN Sbjct: 299 ARRTNLLKDKDKNLEGSDVREGLSAVISLRVPEQYLQFEGQTKDKLGTPEARGIVDAIVN 358 Query: 362 DGLSAWLEEHPLEAKIIVKK--VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 + LS +L E+ + +++K + R T R L GKL+ Sbjct: 359 ETLSRFLMENGDFGQNLIRKALRAREAREAARKARDESRTGRSKNAKERLLSGKLSPAQS 418 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI TLI Sbjct: 419 KNAAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEISTLIY 478 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G G+G D F + + KIIIMTDAD DGAHI+TLLLTFF++ M LI G +YI P Sbjct: 479 AIGGGVGAD-FKVADAAFDKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEEGKIYIALP 537 Query: 540 PLYGIT---RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 PLY + + Q+ + LE + E+ F + + Sbjct: 538 PLYRVKFGSKKHDDQFAWTNDELETITSQTTGRYELTRFKGLGEMNA 584 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 48/62 (77%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + R+KGLGEMNAS LWETT++P++R+L+RVKI D A+ + LMGD+VEPRR +I+ Sbjct: 571 YELTRFKGLGEMNASLLWETTMDPESRTLIRVKIDDGVLAEKRVTTLMGDKVEPRRNWIE 630 Query: 794 EN 795 N Sbjct: 631 AN 632 >gi|72080449|ref|YP_287507.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448] gi|71913573|gb|AAZ53484.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448] Length = 639 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 251/591 (42%), Positives = 366/591 (61%), Gaps = 12/591 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A I V Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D ++ D+GRGIPT +H + ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 61 TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184 VVNALS L++ IKR+G ++ FIN G L V + + +GT++ F P +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F T+ +RL+ ++L ++ LIDKRS T ++GGI +V L ++ K L Sbjct: 181 NSFQLLTIFNRLKNTAYLTRGIEFELIDKRSD--FSQTFCFEGGISDYVDELSKNFKKLT 238 Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I + ++D I ++ A+ + H + +TNNI +GG+H +GL L R + Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + + D ++G +++SIK +P F QTK KL + EVR V Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +AK I+ + L A AA+ AR+ +RK DI +LPGKLADC+ + Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCATK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + + +EL++VEG+SAGGSAK GR R QAILPLRGK++N +R + +K+L ++EI ++ITA Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTG+G FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR LI GF+YI PP Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 LY I++GK + Y +E+ E +L G ++ L Sbjct: 538 LYKISQGKKIFYAYNEKEKEKFLAEILKENSKFTIQRYKGLGEMNPEQLWE 588 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 13/225 (5%) Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + I + ++ + QA++ + Q + K L+ I Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE-----NYL 702 + S I ++I + +GS I S + + ++ E + Sbjct: 479 -FGTGVGPEFDISKIRYQKII--IMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAI 535 Query: 703 TILSLICNGDKI----KITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 L I G KI L I K ++QRYKGLGEMN QLWETT++P Sbjct: 536 PPLYKISQGKKIFYAYNEKEKEKFLAEILKENSK-FTIQRYKGLGEMNPEQLWETTMDPQ 594 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 TR + +V+I D +F LMG +V R+ FI+EN+ + +DI Sbjct: 595 TRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639 >gi|83319442|ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110022|sp|P50028|GYRB_MYCCT RecName: Full=DNA gyrase subunit B gi|83283328|gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 643 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 255/598 (42%), Positives = 360/598 (60%), Gaps = 17/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N + YD +IQ+L+GL+AV+KRP MYIG TD GLHH+++E++DNAIDE+L GY Sbjct: 1 MAENKK---YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L D S TV DNGRGIPT +H + G EVI + LHAGGKF+ +YK SGGL Sbjct: 57 CTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SV NALS K I R+ I+E+ F N G L+ PL + TGT + FLP Sbjct: 116 HGVGSSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFI-NTTYKTGTTINFLPDD 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FN+ + RL+E + LNS ++I+L D S E + G+ FV L Sbjct: 175 TIFSNAKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--QDGLVEFVKELVDD 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ I I NI +++A+++ + +E +L F NN+ DGGTHL G +S L R Sbjct: 233 KTPVT-DIITINNESKNIIVEIALQYTEDDNEIILGFANNVKTIDGGTHLVGFKSGLIRA 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 I Y + K DK + +D REG +++++K+P+ + QTK KL +S+ ++VVE Sbjct: 292 INDYAKDQKILK-DKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 V + +S WL E+ + A +++ L+A R AA++AR + + + GKL Sbjct: 351 QIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLT 410 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 + + +EL+LVEGDSAGGSAK GR R QAILPLRGK++N E+A+ +L ++EI Sbjct: 411 PAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M LI + +Y Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVY 529 Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY IT Y+ DEE L + + EI+ + + + + +D Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 7/285 (2%) Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 +T++ + M + + + + + + + + + Sbjct: 346 KTVVEQIVYEFMSYWLIENKV-LANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKL 404 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEI 630 + K +++ ++ + QA++ V N E + + Sbjct: 405 MLGKLTPAQGKK---RELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLV 461 Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690 ++ ++ + +N I K + S N ++ + F + Sbjct: 462 DLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKD 521 Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 I ++ + + N L+ K +QRYKGLGEMNA QL Sbjct: 522 LIIHKKVYIALPPLYKITFNDKSFIYLWDEEELNKFNKTNTKKYEIQRYKGLGEMNADQL 581 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 W+TT++P R +++V I+D A+ +F LMGD+VE R+ +IQEN Sbjct: 582 WQTTMDPKNRKIIQVTISDGLLAERMFKTLMGDDVEKRKLWIQEN 626 >gi|54020117|ref|YP_115783.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232] gi|53987290|gb|AAV27491.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232] Length = 639 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 246/591 (41%), Positives = 358/591 (60%), Gaps = 12/591 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A++I +L+GL+AV+KRP MYIG T G + LHH+++E++DNA+DE+L G+A I V Sbjct: 2 SKDYQAENIVVLEGLEAVRKRPGMYIGGT-GINELHHLVWEIVDNAVDEALAGFASKIKV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ D ++ D+GRGIPT +H + ISAAEV+ T LHAGGKF+ KSYKVSGGLHGVG S Sbjct: 61 TILDDFKISIEDDGRGIPTGIHPKYEISAAEVVFTVLHAGGKFDGKSYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSV 184 VVNALS L++ IKR+G ++ FIN G L V + + +GT++ F P +I Sbjct: 121 VVNALSKELEVFIKRDGKLWYQKFINGGQKTADLSVISNLDSSQSGTKIIFSPDFEILEK 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 F T+ +RL+ ++L +I T ++GGI +V L ++ K L Sbjct: 181 NSFQLLTIFNRLKNTAYLTR--RIQFELIDKRSDFSQTFCFEGGISDYVEELSKNFKKLT 238 Query: 245 QSPIR----IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + I + ++D I ++ A+ + H + +TNNI +GG+H +GL L R + Sbjct: 239 NTIIYSENQYEHNQDTIKVEFALNYVQEDHSQIKSYTNNIHNPEGGSHENGLCDGLLRIL 298 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y + K + + D ++G +++SIK +P F QTK KL + EVR V Sbjct: 299 NNYALSNKFIKSETDKFVKQDIKDGLIAIVSIKHTNPIFEGQTKAKLNNKEVRQFVNKAF 358 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 ++ +L E+P +AK I+ + L A AA+ AR+ +RK DI +LPGKLADC + Sbjct: 359 SEVFQRYLAENPEDAKKIIARNLLAQKAARAAKSAREAIKRKSAFDIGTLPGKLADCGTK 418 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 + + +EL++VEG+SAGGSAK GR R QAILPLRGK++N +R + +K+L ++EI ++ITA Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 GTG+G FDI+K+RY KIIIMTDAD DG+HIR+LLLTF FR LI GF+YI PP Sbjct: 479 FGTGVG-PEFDISKIRYQKIIIMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAIPP 537 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 LY I++GK + Y +E E +L G ++ L Sbjct: 538 LYKISQGKKIFYAYNEREKEKFLAEILKENSKFTIQRYKGLGEMNPEQLWE 588 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 13/225 (5%) Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAE 647 + I + ++ + QA++ + Q + K L+ I Sbjct: 419 NSEIAELYIVEGNSAGGSAKMGRDRHFQAILPLRGKVINSQRFQLEKVLKNEEILSMITA 478 Query: 648 KSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEE-----NYL 702 + S I ++I + +GS I S + + ++ E + Sbjct: 479 -FGTGVGPEFDISKIRYQKII--IMTDADSDGSHIRSLLLTFLFRYFKKLIEFGFVYIAI 535 Query: 703 TILSLICNGDKIK-ITGPCS---LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 L I G KI L I K ++QRYKGLGEMN QLWETT++P Sbjct: 536 PPLYKISQGKKIFYAYNEREKEKFLAEILKENSK-FTIQRYKGLGEMNPEQLWETTMDPQ 594 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 TR + +V+I D +F LMG +V R+ FI+EN+ + +DI Sbjct: 595 TRRMYQVQIHDLEVVAQVFDSLMGTDVTMRKIFIEENAQYAKVDI 639 >gi|331703509|ref|YP_004400196.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384465|gb|ACU79035.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385298|gb|ACU79867.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455442|gb|ADH21677.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802064|emb|CBW54218.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 643 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 256/598 (42%), Positives = 361/598 (60%), Gaps = 17/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N + YD +IQ+L+GLDAV+KRP MYIG TD GLHH+++E++DNAIDE+L GY Sbjct: 1 MAENKK---YDESAIQVLEGLDAVRKRPGMYIGSTDN-RGLHHLVWEIVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L D S TV DNGRGIPT +H + G S EVI + LHAGGKF+ +YK SGGL Sbjct: 57 CTQIDVILEKDNSITVIDNGRGIPTGMH-KTGKSTPEVIFSVLHAGGKFDSTAYKSSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SV NALS K I R+ I+E+ F N G L+ PL + TGT + FLP Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FN+ + RL+E + LNS ++I+L D S E + G+ F+ L Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--QDGLVEFIKELVDD 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K P+ I I NI ++A+++ + +E +L F NN+ DGGTHL G +S L R Sbjct: 233 KTPVT-DIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 I Y + K DK + +D REG +++++K+P+ + QTK KL +S+ ++VVE Sbjct: 292 INDYAKDQKILK-DKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 V + +S WL E+ + A +++ L+A R AA++AR + + + GKL Sbjct: 351 QIVYEFMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLT 410 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 + + +EL+LVEGDSAGGSAK GR R QAILPLRGK++N E+A+ +L ++EI Sbjct: 411 PAQGKKRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M LI + +Y Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLITHKKVY 529 Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY IT Y+ DEE L ++ + EI+ + + + + +D Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 7/285 (2%) Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 +T++ + M + + + + + + + + + Sbjct: 346 KTVVEQIVYEFMSYWLIENKV-LANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKL 404 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEI 630 + K +++ ++ + QA++ V N E + + Sbjct: 405 MLGKLTPAQGKK---RELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLV 461 Query: 631 NVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYK 690 ++ ++ + +N I K + S N ++ + F + Sbjct: 462 DLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKD 521 Query: 691 RIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQL 750 I ++ + + N L+ K +QRYKGLGEMNA QL Sbjct: 522 LITHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQL 581 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 W+TT++P R +++V I+D A+ +F LMGD+VE R+ +IQEN Sbjct: 582 WQTTMDPKNRKIIQVSISDGLLAERMFKTLMGDDVEKRKLWIQEN 626 >gi|326778153|ref|ZP_08237418.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1] gi|326658486|gb|EGE43332.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1] Length = 689 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 281/660 (42%), Positives = 386/660 (58%), Gaps = 25/660 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I VT Sbjct: 31 ASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDVT 89 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVSV Sbjct: 90 ILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 149 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ + + +K +G+ + + G+ PL A +TGT VTF DIF ++ Sbjct: 150 VNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HEATEETGTTVTFWADGDIFETTEY 208 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKGG 228 +++TL R +E++FLN + + L D+R R +T Y+ G Sbjct: 209 SFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPSEEETARSVTYHYENG 268 Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 I FV Y R + QS I I+ + +S+++AM+WN Y E V F N I +G Sbjct: 269 IVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIHTHEG 328 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH G R+ALT + Y + ++ G+D REG T+++S+K+ +P+F QTK Sbjct: 329 GTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAIISVKLGEPQFEGQTKT 388 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRRKG+L Sbjct: 389 KLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGLL 448 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 + ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR Sbjct: 449 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARV 508 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 509 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 567 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 568 RPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKGL 627 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 628 GEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 687 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 662 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689 >gi|239637043|ref|ZP_04678037.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603] gi|239597393|gb|EEQ79896.1| DNA topoisomerase IV, B subunit [Staphylococcus warneri L37603] Length = 666 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 266/672 (39%), Positives = 387/672 (57%), Gaps = 18/672 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N QN Y DSIQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MAMNKQNH-YSDDSIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEVLNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D ITV LN D S ++ DNGRG+PT +H G +VI T LHAGGKF Q YK SGGL Sbjct: 59 GDEITVILNQDDSISIEDNGRGMPTGIHAS-GKPTVQVIFTILHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS WL++ I R+GNIY+ SF + G+ L+ G P Sbjct: 118 HGVGASVVNALSEWLEVEIHRDGNIYKQSFKDGGVPATELLKEGKTKKTGTKVTF-KPDP 176 Query: 180 DIFS-VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 +IF FN+D L RL+E +FL +++I LID R + RE Y+ GI+ FVSY++ Sbjct: 177 EIFKATTSFNFDVLSERLQESAFLLKNLKIKLIDLRRGKEREEYYHYEEGIKEFVSYVNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K+ L G+ + I +D+A ++ND Y E++L F NN+ KDGGTH G ++A+TR Sbjct: 237 GKEVLH-EVTTFTGTSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTR 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y + K+ +++ G+D REG T+++S+++P+ +F QTK KL +SE RS V Sbjct: 296 VFNDYARRINELKEKDKNLDGNDIREGLTAIVSVRIPEELLQFEGQTKSKLGTSEARSAV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKL 414 +S V++ L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 356 DSVVSEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 416 TPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEI 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G + F I Y +IIIMTDAD DGAHI+ LLLTFFF+ M L+ G + Sbjct: 476 NTIIHTIGAGVGNE-FKIEDSNYSRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 +I PPLY + + K ++Y ++ L+ ++ + + + Sbjct: 535 FIALPPLYKLEKGKGKSKKVEYAWTDDELDKLQKQLGKGFSLQRYKGLGEMNPEQLWETT 594 Query: 591 I--DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEK 648 + D I ++D + + + + + L+ N + Sbjct: 595 MNPDTRTLIRVQVEDEVRSSKRVTTLMGDKVAPRREWIENHVEFGMQEDLSILDNTEVQI 654 Query: 649 SEKSWHGSINNS 660 E + + Sbjct: 655 LENETYEEDETN 666 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I + +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNEFKIEDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 ++ + F F + + R+ + L K++ Sbjct: 498 SRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKSKKVEYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 LD + KG S+QRYKGLGEMN QLWETT+NPDTR+L+RV++ D ++ Sbjct: 558 WTDDELDKLQKQLGKGFSLQRYKGLGEMNPEQLWETTMNPDTRTLIRVQVEDEVRSSKRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+V PRRE+I+ + Sbjct: 618 TTLMGDKVAPRREWIENH 635 >gi|170017459|ref|YP_001728378.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20] gi|169804316|gb|ACA82934.1| DNA topoisomerase IV, B subunit [Leuconostoc citreum KM20] Length = 687 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 260/675 (38%), Positives = 387/675 (57%), Gaps = 22/675 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ + YD+DSI+IL+GL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY Sbjct: 1 MAEK---NHYDSDSIKILEGLEAVRKRPGMYIGSTD-GRGLHHLVYEIVDNAVDEALGGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT++ + + TV D GRG+P +H E G EVI+T LHAGGKF Q Y SGGL Sbjct: 57 GNEIRVTIHDNNAITVQDFGRGMPVGMH-ESGKPTPEVILTVLHAGGKFGQGGYATSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS L++ I R+G+ ++ FI+ G L G+ +GT VTF P Sbjct: 116 HGVGSSVVNALSESLQVTIIRDGHQWQEDFIDGGQPVGTLRDLGATKAKSGTTVTFKPDP 175 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS + YDTL RLRE +FL S V+ L D+R R T Y+ G+E+FV++L+ Sbjct: 176 SIFSATVYKYDTLSERLRESAFLMSGVKFILTDERVSPARVETYHYEKGLESFVNFLNED 235 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ + + +G ++ + +D+A ++NDGY E +L F NN+ +DGGTH G R+A T+ Sbjct: 236 KETIGP-VMTFEGQQEGLVVDVAAQYNDGYSETLLSFVNNVRTQDGGTHEVGFRTAWTKA 294 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 Y K K+ +++ G D REG ++V+S+++P+ +F QTK+KL + E R +V+ Sbjct: 295 FNEYARKVNLLKEKDKNLEGSDVREGLSAVISLRVPEQFLQFEGQTKDKLGTPEARGIVD 354 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA--RDLTRRKGVLDIASLPGKLA 415 + VN+ L +L E+ + I++K + A R+AAR+A T + L GKLA Sbjct: 355 AVVNETLGRFLMENGDFGQNIIRKAIRAREAREAARKARDESRTGKTKGQKDRLLSGKLA 414 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ ++ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ +L ++EI Sbjct: 415 PAQSKNAARNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLADILKNEEIS 474 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLI A+G G+G F + ++KIIIMTDAD DGAHI+TLLLTFF++ M LI G +Y Sbjct: 475 TLIYAIGGGVG-PDFKVEDTAFNKIIIMTDADDDGAHIQTLLLTFFYKYMRPLIEAGRVY 533 Query: 536 IIKPPLYGITRGKS---LQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY + Q+ + LE E+ F + + Sbjct: 534 IALPPLYRVKYASKKFEDQFAWTNDELESITSQNDARYELTRFKGLGE------MNAPLL 587 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 ++ + + + + + + + ++ + + Sbjct: 588 WETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIEANVHFTMDEAGSILD-N 646 Query: 653 WHGSINNSDILVKRI 667 G +S + ++I Sbjct: 647 VDGDNESSTAVFEKI 661 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 49/62 (79%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 + R+KGLGEMNA LWETT+NP+TR+L+RVKI DA A+ + LMGD+VEPRR++I+ Sbjct: 571 YELTRFKGLGEMNAPLLWETTMNPETRTLIRVKIDDAVLAEKRVTTLMGDKVEPRRDWIE 630 Query: 794 EN 795 N Sbjct: 631 AN 632 >gi|293977916|ref|YP_003543346.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN] gi|292667847|gb|ADE35482.1| DNA gyrase subunit B [Candidatus Sulcia muelleri DMIN] Length = 667 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 258/658 (39%), Positives = 380/658 (57%), Gaps = 35/658 (5%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N +Y + +I+ L G++ V+ RPSMYIGD G GLHHM+YEV++N+IDESL G+ D Sbjct: 17 KKSNENYTSKNIKFLDGIEHVRLRPSMYIGDI-GIKGLHHMVYEVINNSIDESLSGFCDK 75 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT++ D S TV DNGRGIP +LH++EGISA E++MT++ AGGKF+ SYK SGGLHGV Sbjct: 76 IYVTIHKDNSITVLDNGRGIPVELHEKEGISALELVMTKIGAGGKFDNNSYKFSGGLHGV 135 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+S VNALSS L +I R G IY + G+ + L + G + N GT++TF +F Sbjct: 136 GISCVNALSSKLIAKIFRNGKIYVQKYSRGVPISKLEIIGDSKNQRGTQITFKADKFLFK 195 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR----SPEPREITMFYKGGIEAFVSYLDRH 239 + +NY L++RLRELSFLN + ISL+D+R + ++ F K GI+ F+ +++ + Sbjct: 196 KRSYNYSILKNRLRELSFLNKGLSISLLDERKISKTGFFKKNHFFSKKGIKEFLMFIETN 255 Query: 240 KK----------PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 K+ ++ ++ ++ N++++L MR+N Y E + + NNI +GGTH+ Sbjct: 256 KESIIENYKDKKSRIKDFFYLKKNKKNLNLELVMRYNSSYKEKIFSYVNNINTSEGGTHI 315 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG + ALT+ + K+ + K + G EG T++L+IK+ +P+F QTK KLV+ Sbjct: 316 SGFKKALTKTFKKFFSKNR--RFKKLKISGGSFIEGLTAILTIKIINPKFEGQTKNKLVN 373 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 E+ +VE V +++LE++PL K I+ KV ++ R A +R R+L + K + Sbjct: 374 YEIIGLVEKIVKKKFNSFLEKNPLYLKKILNKVFLSAKARQAYKRVRELIKTKTS-KKNN 432 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LP KLADCS ++P EL+LVEGDSAGG+AKQGR R+ QA+LPLRGKILNVE++ +K+ Sbjct: 433 LPIKLADCSSKNPNLCELYLVEGDSAGGTAKQGRERKFQAVLPLRGKILNVEKSIKNKIF 492 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKI----------IIMTDADVDGAHIRTLLLT 519 ++EI + ALG F K K+ IIMTDAD+DG+HI TL+LT Sbjct: 493 ENEEIKNIFLALGV------FFFKKKNIIKLNIKKIRYKKIIIMTDADIDGSHISTLVLT 546 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFFR M LI G++YI PPL+ I K Y + + E L L Sbjct: 547 FFFRYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSLLKGISIQRYKGL 606 Query: 580 GVISKNDLRN-FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLAS 636 G ++ L ++ + + + + V + E N A Sbjct: 607 GEMNAEQLWETTMNPINRTLRKVTIHNRKIANKIFSMLMGENVLPRKQFIETNALFAK 664 Score = 150 bits (379), Expect = 1e-33, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 673 EQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKIT--GPCSLLDTIFSIG 730 L + F +Y RI + T + K KI + Sbjct: 539 HISTLVLTFFF----RYMRILIEKGYIYIATPPLFLIKNYKKKIYAWNYKEREKILKKSL 594 Query: 731 RKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRRE 790 KGIS+QRYKGLGEMNA QLWETT+NP R+L +V I + A+ +FS LMG+ V PR++ Sbjct: 595 LKGISIQRYKGLGEMNAEQLWETTMNPINRTLRKVTIHNRKIANKIFSMLMGENVLPRKQ 654 Query: 791 FIQENSLPSALD 802 FI+ N+L + +D Sbjct: 655 FIETNALFAKID 666 >gi|255326477|ref|ZP_05367559.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296] gi|255296517|gb|EET75852.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296] Length = 678 Score = 535 bits (1379), Expect = e-149, Method: Composition-based stats. Identities = 274/667 (41%), Positives = 382/667 (57%), Gaps = 34/667 (5%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Q Y A I +L+GL+AV+KRP MYIG T E GLHH++YEV+DN++DE+L GYA I Sbjct: 10 QQHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGYASKID 68 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT+ DG+ V D+GRGIP D H E S EV+MT LHAGGKF Y VSGGLHGVG+ Sbjct: 69 VTIQADGAVRVEDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYSVSGGLHGVGI 128 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS+ + + R+G + +SF N G+ D PL G + TGT TF P +IF Sbjct: 129 SVVNALSTRVITEVHRQGYAWHISFSNGGVPDGPLRK-GEPSDKTGTIQTFYPDPEIFET 187 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-------------------------PR 219 +F+++TL+ R ++++FLN + I+L D+R Sbjct: 188 VEFDFETLRARFQQMAFLNKGLTITLTDEREKFVGDEVAEESEKKENILNRVRANADGFM 247 Query: 220 EITMFYKGGIEAFVSYLDRH-KKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCF 276 +T Y G+ +V +L+ K + + + + N+S+++AM+W Y E+V + Sbjct: 248 TVTYRYDNGLFDYVHFLNAGAKTIVNEEIVSFEAEDTERNMSLEVAMQWTGAYKESVYSY 307 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 N I +GGTH G R+ALT + Y ++ + ++ G+D REG T+V+SIK+ + Sbjct: 308 ANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTAVISIKISE 367 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL +SE +S + VND L W +P AK IV++ + A+ R AAR+AR Sbjct: 368 PQFEGQTKTKLGNSEAKSFTQREVNDHLGDWFGRNPAVAKDIVRRAITAAQARIAARKAR 427 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 + TRRKG+L+ +S+PGKL DCS +DP SE++LVEGDSAGGSA QGR+ QAILPLRGK Sbjct: 428 ETTRRKGLLETSSMPGKLKDCSSKDPSISEIYLVEGDSAGGSAVQGRNPNTQAILPLRGK 487 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTL 516 ILNVERAR D+ LS+ EI +ITA GTGIG D FDI K RYHKI++M DADVDG HI TL Sbjct: 488 ILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDIEKARYHKIVLMADADVDGQHITTL 546 Query: 517 LLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELF 575 LLT FR M LI G++Y+ +PPLY I + YV + ++ L + Sbjct: 547 LLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVYSDAERDEALARGAAKNLRLPK 606 Query: 576 CDSKGVISKNDLRNFIDDA-LKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSL 634 + ++ + +D + + I V E + + Sbjct: 607 DNGIQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFI 666 Query: 635 ASKLANR 641 + Sbjct: 667 QQNAKDI 673 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 40/69 (57%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++P R+LL+VK+ DA+ AD +FS LMG++VE RREFIQ+N Sbjct: 610 IQRYKGLGEMDYTELWDTTMDPARRTLLQVKMEDAAAADQIFSVLMGEDVEARREFIQQN 669 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 670 AKDIRFLDI 678 >gi|308175819|ref|YP_003915225.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117] gi|307743282|emb|CBT74254.1| DNA gyrase subunit B [Arthrobacter arilaitensis Re117] Length = 687 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 262/607 (43%), Positives = 372/607 (61%), Gaps = 26/607 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + +Y A I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY Sbjct: 21 MTSKV-EHTYGAQDITVLEGLEAVRKRPGMYIGST-GPRGLHHLVYEVVDNSVDEALAGY 78 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 D I VTL DG DNGRGIP D+H EG EV+MT LHAGGKF Y VSGGL Sbjct: 79 CDTINVTLQADGGVRCEDNGRGIPVDVHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 138 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG+SVVNALS + ++R+G+ + + F NG + G + TGT TF P + Sbjct: 139 HGVGISVVNALSEKVNTIVRRQGHAWRIGFGNGGHTTQQLTKGEETDRTGTSQTFYPDPE 198 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------PEPREIT 222 IF +F+++TL+ R ++++FLN ++I+L D+R +PR + Sbjct: 199 IFETVEFDFETLRARFQQMAFLNKGLRITLTDERPQDNAEPEAEVEEEIENQVVKPRTVD 258 Query: 223 MFYKGGIEAFVSYLD--RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278 YK G+ +V +L+ + + + I + + IS+++AM+W + Y E+V + N Sbjct: 259 YLYKDGLLDYVKHLNAAKKIELVHDEVIAFESEDSKRGISLEIAMQWTNAYAESVHTYAN 318 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 I +GGTH G R+ALT + Y + ++ ++ G+D REG T+V+S+K+ +P+ Sbjct: 319 TINTHEGGTHEEGFRAALTGLLNRYARDNKILREKDDNLTGEDAREGLTAVISVKLSEPQ 378 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 F QTK KL +S R V+ VN+ L W E +P A+ I++K AS R AAR+ARD Sbjct: 379 FEGQTKTKLGNSMARGFVQGVVNEELGDWFERNPNVARDIIRKAQLASQARMAARKARDN 438 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 RRK ++ +PGKL+DCS ++P + E+F+VEGDSAGGSAK+GR QAILPLRGKIL Sbjct: 439 ARRKSPMESFGMPGKLSDCSSKNPAECEVFIVEGDSAGGSAKRGRDPHTQAILPLRGKIL 498 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVERAR D+ L + E+ +ITA GTGIG++ FD+ KLRYHKI++M DADVDG HI TLLL Sbjct: 499 NVERARLDRALGNAEVQAMITAFGTGIGEE-FDMAKLRYHKIVLMADADVDGQHITTLLL 557 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577 T FR M LI +G++Y+ PPLY I + YV ++ +D L+ S + + Sbjct: 558 TLIFRFMRPLIEHGYVYLAAPPLYRIKWSNAAHDYVFSDKERDDALLAGQASNKRLPKDN 617 Query: 578 SKGVISK 584 Sbjct: 618 GIQRYKG 624 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ S+LW+TT++P+ R+L +V + DA+ AD++FS LMG++VE RR FIQ+N Sbjct: 619 IQRYKGLGEMDYSELWDTTMDPERRTLRQVTMDDAAAADEVFSVLMGEDVESRRNFIQQN 678 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 679 AKDVRFLDI 687 >gi|182437498|ref|YP_001825217.1| DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466014|dbj|BAG20534.1| putative DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC 13350] Length = 681 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 281/660 (42%), Positives = 386/660 (58%), Gaps = 25/660 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I VT Sbjct: 23 ASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDVT 81 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVSV Sbjct: 82 ILADGGVRVIDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 141 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ + + +K +G+ + + G+ PL A +TGT VTF DIF ++ Sbjct: 142 VNALSTRVAVEVKTDGHRWTQDYKLGVPTAPLAQ-HEATEETGTTVTFWADGDIFETTEY 200 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKGG 228 +++TL R +E++FLN + + L D+R R +T Y+ G Sbjct: 201 SFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSVDAAEPSEEETARSVTYHYENG 260 Query: 229 IEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDG 285 I FV Y R + QS I I+ + +S+++AM+WN Y E V F N I +G Sbjct: 261 IVDFVKYLNSRKGDVIHQSVIDIEAEDKDRLLSVEIAMQWNTQYTEGVYSFANAIHTHEG 320 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH G R+ALT + Y + ++ G+D REG T+++S+K+ +P+F QTK Sbjct: 321 GTHEEGFRAALTSLVNRYARDKKLLRDKDDNLTGEDVREGLTAIISVKLGEPQFEGQTKT 380 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRRKG+L Sbjct: 381 KLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGLL 440 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 + ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR Sbjct: 441 ESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKARV 500 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 501 DKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRFM 559 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKN 585 L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 560 RPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKGL 619 Query: 586 DLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 N + + + QA D E S + A + F+ Sbjct: 620 GEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRFL 679 Score = 140 bits (353), Expect = 1e-30, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 595 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 654 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 655 SVLMGEDVEARRSFIQRNAKDVRFLDI 681 >gi|313238122|emb|CBY13220.1| unnamed protein product [Oikopleura dioica] Length = 613 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 271/540 (50%), Positives = 357/540 (66%), Gaps = 20/540 (3%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIGD D E GLHH ++EVLDN+IDE L GY I V +++DGS ++SDNGRGIP D+H Sbjct: 1 MYIGDPD-ERGLHHCVFEVLDNSIDEHLAGYCSRIKVAIHVDGSVSISDNGRGIPVDMHP 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + GI A E+++T LHAGGKF Q +YK SGGLHGVG VNAL+ W + I R G ++ ++ Sbjct: 60 KFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCVNALADWFRADIMRNGKVHRIA 119 Query: 150 FINGILDNPLVVTGS-AGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQ 207 F G L V G N TGT +TF P + IF F +D L RLREL+FLN + Sbjct: 120 FERGKTTEQLHVVGEVDPNKTGTTITFFPDATIFVDTIEFKFDRLATRLRELAFLNPGLI 179 Query: 208 ISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD------------ 255 I L D+R ++ + +Y GIE FV L +K + P+ + G R Sbjct: 180 IDLEDERPESAKKASFYYAKGIEEFVVQLGENKTVIHDDPVVLNGKRQIELDYDGKQTTD 239 Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315 ++ D+ ++ND Y++ +LCF N+IP DGGTHL+G R+ALTR I Y + + K Sbjct: 240 DVFADVVFQYNDSYNDQILCFANSIPNGDGGTHLTGFRTALTRGINQYAKVNKILKDKDP 299 Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375 ++ GDD REG V+S+KMP+PRFSSQTK+KLV++E+ VV S V +G+ + +E+P A Sbjct: 300 ALSGDDVREGLVCVISVKMPNPRFSSQTKDKLVNTEIEGVVSSIVYEGIMQYFDENPALA 359 Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 + +++K + + A R T RK L LPGKLADCSERDP KSEL++VEGDSA Sbjct: 360 RKVIEKSV-NAARAREAARKARETVRKSALSGGGLPGKLADCSERDPAKSELYIVEGDSA 418 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIG----QDSFD 491 GGSAKQGR R QAILPLRGK++NVE+AR + L ++EI LITA+G GIG + SF+ Sbjct: 419 GGSAKQGRDRRTQAILPLRGKLINVEKARLHRALQNKEIQNLITAIGAGIGDGEQEGSFN 478 Query: 492 INKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ 551 I+K+RYHK++IMTDADVDG+HIRTLLLTFF R MP L+ GFLYI +PPLY +TR Q Sbjct: 479 IDKVRYHKVVIMTDADVDGSHIRTLLLTFFCRHMPELVKRGFLYIAQPPLYLVTREGEKQ 538 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 41/83 (49%), Positives = 60/83 (72%), Gaps = 5/83 (6%) Query: 726 IFSIGRK--GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADDLFSRLM 781 + G K G+ ++R+KGLGEMNA QL+ETT++P+TR LRV++ + A +AD +F LM Sbjct: 531 VTREGEKQHGVQIKRFKGLGEMNAKQLFETTMDPETRQFLRVRLDEDNAVEADKMFDVLM 590 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 GD VEPR+ FI++N+L LD+ Sbjct: 591 GDIVEPRKRFIEDNALNVRNLDV 613 >gi|28627816|gb|AAN75468.1| DNA gyrase subunit B [Streptomyces roseochromogenes subsp. oscitans] Length = 677 Score = 535 bits (1378), Expect = e-149, Method: Composition-based stats. Identities = 278/642 (43%), Positives = 391/642 (60%), Gaps = 22/642 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT Sbjct: 24 ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG V DNGRGIP H E A EV++T LHAGGKF Y VSGGLHGVG+SV Sbjct: 83 ILADGGVRVVDNGRGIPVGTHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ L I +G + + +G PL A + TGT +TF DIF ++ Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTEY 201 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233 +++TL R +E++FLN + ++L D+R P + ++ Y GGI FV Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEADSDPAAKTVSYRYDGGITDFV 261 Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +Y R +P S I I +S ++A++WN Y ++V + N I +GGTH Sbjct: 262 AYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQYTDSVYSYANGIHTHEGGTHEE 321 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G R+ALT + Y + ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++ Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISVKLGEPQFEGQTKTKLGNT 381 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 E R+ V+ V++ L+ W + +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ A+L Sbjct: 382 EARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATARVAARKARDLTRRKGLLETAAL 441 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L Sbjct: 442 PGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M L+ Sbjct: 502 NQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVE 560 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +Y+ +PPLY I G+ + D L+ + + + DS L Sbjct: 561 EGHVYLSRPPLYKIKWGRDHVEYAYSDRERDVLLERGRQDGRRIKDDSIQRFKG--LGEM 618 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L++ + D T + AV +F+ +++ Sbjct: 619 NAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSVLMGEDVEA 660 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 722 LLDTIFSIGR--KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LL+ GR K S+QR+KGLGEMNA +L TT++PD R L +V + DA+ ADDLFS Sbjct: 593 LLERGRQDGRRIKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSV 652 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 LMG++VE RR FIQ N+ LDI Sbjct: 653 LMGEDVEARRHFIQRNAKDVRFLDI 677 >gi|282863315|ref|ZP_06272374.1| DNA gyrase, B subunit [Streptomyces sp. ACTE] gi|282561650|gb|EFB67193.1| DNA gyrase, B subunit [Streptomyces sp. ACTE] Length = 689 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 282/661 (42%), Positives = 385/661 (58%), Gaps = 25/661 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V Sbjct: 30 SPSYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 89 TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ PL A +TGT VTF DIF D Sbjct: 149 VVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAR-HEATEETGTTVTFWADGDIFETTD 207 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS-------------------PEPREITMFYKG 227 ++++TL R +E++FLN + + L D+R R +T Y+ Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLKLTDERESAKATAGADSAEAVEVPEEESTRTVTYHYED 267 Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKD 284 GI FV Y R + QS I I+ +S+++AM+WN Y E V F N I + Sbjct: 268 GIVDFVKYLNSRKGDVIHQSVIDIESEDKERLLSVEIAMQWNTQYSEGVYSFANAIHTHE 327 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK Sbjct: 328 GGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEGQTK 387 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRRKG+ Sbjct: 388 TKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGL 447 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR Sbjct: 448 LESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKAR 507 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR Sbjct: 508 VDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 566 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 567 MRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKG 626 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 N + + + QA D E S + A + F Sbjct: 627 LGEMNAEELRITTMDIDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRF 686 Query: 645 I 645 + Sbjct: 687 L 687 Score = 138 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDIDHRVLGQVTLDDAAQADDLF 662 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689 >gi|313665344|ref|YP_004047215.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50] gi|312949281|gb|ADR23877.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50] Length = 643 Score = 534 bits (1377), Expect = e-149, Method: Composition-based stats. Identities = 258/598 (43%), Positives = 365/598 (61%), Gaps = 17/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N + YD +IQ+L+GL+AV+KRP MYIG TD GLHH+++E++DNAIDE+L GY Sbjct: 1 MAENKK---YDESAIQVLEGLEAVRKRPGMYIGSTDN-KGLHHLVWEIVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I VTL D S T+SDNGRGIPT +H + G S EVI + LHAGGKF+ +YK SGGL Sbjct: 57 CTQIDVTLEKDNSITISDNGRGIPTGMH-KTGKSTPEVIFSILHAGGKFDSTAYKSSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SV NALS K I R+ I+E+ F N G L+ PL + TGT + FLP Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FN+ + RL+E + LNS ++I+L D S E + G+ F+ L Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQF--EDGLVEFIKELVDD 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK + I I NI ++A+++ + +E +L F NN+ DGGTHL G +S L R Sbjct: 233 KKV-ITDIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 I Y ++ K DK + +D REG +++++K+P+ + QTK KL +S+ ++VVE Sbjct: 292 INDYAKEQKILK-DKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 V + +S WL E+ + A I++ L+A R AA++AR + + + GKL Sbjct: 351 QIVYEFMSYWLIENKVLANKIIENALNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLT 410 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 + + +EL+LVEGDSAGGSAK GR R QAILPLRGK++N E+A+ +L ++EI Sbjct: 411 PAQGKKREINELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ++I A+GTG+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M LI + +Y Sbjct: 471 SIINAIGTGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVY 529 Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY IT Y+ DEE L ++ + EI+ + + + + +D Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 78/175 (44%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +++ ++ + +N I K + S N ++ + Sbjct: 452 VINSEKAKLVDLLKNEEIQSIINAIGTGVGKDFDISDINYGKIIIMTDADTDGAHIQTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I ++ + + N L+ K +QRYK Sbjct: 512 LTFFYRHMKDLIVHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GLGEMNA QLW+TT++P R +++V ITD A+ +F LMGD+VE R+ +IQEN Sbjct: 572 GLGEMNADQLWQTTMDPKNRKIIQVTITDGLLAERMFKTLMGDDVEKRKLWIQEN 626 >gi|152963978|ref|YP_001359762.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216] gi|151358495|gb|ABS01498.1| DNA gyrase, B subunit [Kineococcus radiotolerans SRS30216] Length = 686 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 265/638 (41%), Positives = 374/638 (58%), Gaps = 26/638 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D Y AD+I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GY D Sbjct: 27 DGTPRPEYGADAITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYCD 85 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG DNGRGIP D+ EG SA EV++T LHAGGKF Y VSGGLHG Sbjct: 86 TIAVTMLADGGLRCVDNGRGIPVDIMPGEGRSALEVVLTVLHAGGKFGGGGYSVSGGLHG 145 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG+SVVNALS + + ++R+G+++ SF G+ PL G +TGT +TF PS + F Sbjct: 146 VGISVVNALSRRVDVEVRRQGHVWRQSFEGGVPVAPLEK-GEETGETGTSITFWPSPETF 204 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT------------MFYKGGIE 230 F+++TL+ R ++ FLN + ISL D+R E Y GG+ Sbjct: 205 ETTVFDFETLRTRFQQTCFLNKGLTISLSDERVVEDEVEDESTDAKPLRDVTYRYDGGLV 264 Query: 231 AFVSYLD--RHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 +V +++ + +PL S I ++ IS+++AM+W Y E V F N I +GG Sbjct: 265 DYVKHVNSLKKNEPLHDSIISLEAEDTEQGISLEVAMQWTTAYSETVFTFANAINTTEGG 324 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSV-IGDDCREGFTSVLSIKMPDPRFSSQTKE 345 TH +G R+ALT + Y + + + G D REG T+++S+K+ +P+F QTK Sbjct: 325 THETGFRTALTSLVQEYARAAKPALLKENDTLEGSDIREGLTAIISVKLSEPQFEGQTKT 384 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++ R+ V + V + L W +P EA I KK AS+ R AAR+AR+ RK +L Sbjct: 385 KLGNTSARTYVNAQVREHLGHWFASNPKEAYQIAKKAHSASVARQAARKAREA-SRKSLL 443 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 + SLPGKL DC +P + E+F+VEGDSAGGSA +GR QAILP+RGKILNVE+AR Sbjct: 444 ERNSLPGKLKDCQSNNPAECEVFIVEGDSAGGSATRGRDPRTQAILPIRGKILNVEKARL 503 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 D+ L +QE+ LITA GTGIG++ F++ KLRYHKIIIM DADVDG HIRTLLLT FR M Sbjct: 504 DRALGNQEVQALITAFGTGIGEE-FNLEKLRYHKIIIMADADVDGQHIRTLLLTLLFRYM 562 Query: 526 PSLIHNGFLYIIKPPLYGITRGK--SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 L+ NG +Y+ +PPLY I + ++ + + + + + Sbjct: 563 SPLVENGHVYLAQPPLYRIKWMGGAAHEFAYSDRERDALMEAGLAAGKKLPKEGKTQRYK 622 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGV 621 N+ + + + + + + +E A + Sbjct: 623 GLGEMNWDELS---ETTMDRAHRTLLQVTLEDAAAADA 657 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 41/88 (46%), Positives = 59/88 (67%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +L++ + G+K G + QRYKGLGEMN +L ETT++ R+LL+V + DA+ AD + Sbjct: 600 ALMEAGLAAGKKLPKEGKT-QRYKGLGEMNWDELSETTMDRAHRTLLQVTLEDAAAADAV 658 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMG++VE RR FIQ N+ LD+ Sbjct: 659 FSVLMGEDVESRRSFIQRNARDVRFLDV 686 >gi|255972743|ref|ZP_05423329.1| gram positive topoisomerase IV [Enterococcus faecalis T1] gi|256762550|ref|ZP_05503130.1| gram positive topoisomerase IV [Enterococcus faecalis T3] gi|255963761|gb|EET96237.1| gram positive topoisomerase IV [Enterococcus faecalis T1] gi|256683801|gb|EEU23496.1| gram positive topoisomerase IV [Enterococcus faecalis T3] Length = 666 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 261/644 (40%), Positives = 374/644 (58%), Gaps = 15/644 (2%) Query: 21 LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNG 80 ++AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY + I VT+ D S V+D+G Sbjct: 1 MEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSG 59 Query: 81 RGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK 140 RG+PT +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL++ I Sbjct: 60 RGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118 Query: 141 REGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199 R+G Y F + G L G GT VTFLP IFS +F+Y+ L RLRE Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRES 178 Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259 +FL V+I+L D+R EP+E Y+ GI+ FV+YL+ K L + G+++ I + Sbjct: 179 AFLLKGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEV 237 Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319 +LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Y K K+ +++ G Sbjct: 238 ELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEG 297 Query: 320 DDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377 D REG +VLSI++P+ +F QTK KL + R+VV++ V + + +L+E+ ++ Sbjct: 298 SDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQS 357 Query: 378 IVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 +++K + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEGDSA Sbjct: 358 LIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSA 417 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Sbjct: 418 GGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDC 476 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555 Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G + V Sbjct: 477 NYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI- 535 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 +Y E+ ++ + ++ + + + I+ Sbjct: 536 -----EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDD 590 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 A + + + + F E+ S + Sbjct: 591 AAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 634 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 359 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 418 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 419 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 478 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 479 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 538 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 539 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 598 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 599 TTLMGDKVEPRRKWIEQH 616 >gi|117575063|emb|CAJ43811.1| gyrase subunit beta [Candidatus Midichloria mitochondrii] Length = 477 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 306/478 (64%), Positives = 375/478 (78%), Gaps = 1/478 (0%) Query: 25 KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84 +KRP MYIGDTD SGLHHM+ EV+DNAIDE+L+G+ I V +N DGS TV D+GRGIP Sbjct: 1 RKRPGMYIGDTDDGSGLHHMVKEVVDNAIDEALQGFCRFIYVAINPDGSVTVVDDGRGIP 60 Query: 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144 TD+H EEG+SAAEVIMT+LHAGGKF+ SYKVSGGLHGVGVSVVNALS WLKLRI R+G Sbjct: 61 TDIHPEEGVSAAEVIMTQLHAGGKFDTNSYKVSGGLHGVGVSVVNALSKWLKLRIWRDGK 120 Query: 145 IYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNS 204 + + F++G+ L V G AG GTEVTFLPSS+IF+ +F++ L+HRL+ELSFLNS Sbjct: 121 EHFVKFVDGVAVKSLEVVGDAGGKRGTEVTFLPSSEIFTTTEFSFSALEHRLKELSFLNS 180 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 V+I + D R+ P+ +++GG++ FV LD+ KK + I + GS +IS +LA++ Sbjct: 181 GVRIKIEDLRAEPPKSSEFYFEGGVKEFVHDLDKSKKAV-SKIIYMSGSDKDISAELALQ 239 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 WND YHEN+LCFTNNI Q DGGTHL+G R+A+TR SYVE+ KK K S+ +D RE Sbjct: 240 WNDSYHENMLCFTNNIRQSDGGTHLAGFRAAITRSFNSYVERMPSFKKQKLSIAPEDIRE 299 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T VLS K+PDP+FSSQTK+KLVSSEVR VVES V D LS WLEE+P EAK IV K+++ Sbjct: 300 GLTCVLSAKVPDPKFSSQTKDKLVSSEVRPVVESIVFDNLSKWLEENPNEAKTIVAKIIE 359 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R+AAR+AR+L R+K LD+A+LPGKLA+C E+ P+ ELFLVEGDSAGGSAKQ R Sbjct: 360 ASAAREAARKARELKRQKSDLDMANLPGKLANCQEKIPEICELFLVEGDSAGGSAKQARD 419 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 R QAILPL+GKILNVERARF+KMLSS EIGTLITA+GT IG + FDI+KLRYHKIII Sbjct: 420 RRIQAILPLKGKILNVERARFNKMLSSAEIGTLITAIGTSIGDNKFDIDKLRYHKIII 477 >gi|325686241|gb|EGD28284.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 643 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 262/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 1 MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 60 NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS++K+ + R+G YE F N G L G+ TGT +TF P IFS Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATKEKTGTTITFKPDPMIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +NY+T+Q R+RE +FL V+ +L D+R+P Y GIE+FVSYL+ K Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVSYLNEG-KGT 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +GS+D + I+ A +++D Y EN + F NN+ DGG+H G RS TR Y Sbjct: 237 IGKVFCFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + LS +L E+ A+ +VKK L A R+AA++ARD +R K L GKL R Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN +RA+ + ++EI T+I Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI PP Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I++ ++ Y +E ++ ++ F + + ++ ++ Sbjct: 536 LYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595 Query: 601 IK 602 ++ Sbjct: 596 VR 597 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ ++ I + +N D ++ + Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739 + +F +Y R + + + + D KG ++QR+ Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRF 570 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 KGLGEMNA QLWETT+NP++R L+RV+I DA A+ + LMGD+ RR++I+EN Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626 >gi|299133795|ref|ZP_07026989.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2] gi|298591631|gb|EFI51832.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2] Length = 689 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 250/657 (38%), Positives = 359/657 (54%), Gaps = 26/657 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + Y A I++L+GL+ V++RP MYIG TD E LHH+ EV+DN++DE+L G+A Sbjct: 40 SSAEAGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHASF 98 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V L DG TV DNGRGIP D H + + SA E+IM LHAGGKF+ K Y+ SGGLHG Sbjct: 99 IEVELGADGYLTVIDNGRGIPVDPHPKFKNKSALEIIMCTLHAGGKFDSKVYETSGGLHG 158 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALSS L + + R +Y M+F G L G N GT + F P ++IF Sbjct: 159 VGVSVVNALSSQLVVEVARNQKLYRMTFERGKPKGKLEELGKVHNRRGTSIRFKPDTEIF 218 Query: 183 -SVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSY 235 F L R ++L V+I P E T + GG++ +++ Sbjct: 219 GGKAVFKPQRLFKMARSKAYLFGGVEIRWKCAPELLKGIEDVPAEDTFHFPGGLKDYLAA 278 Query: 236 LDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 + + R+ + + + A+ W + +TN +P DGGTH +G+R Sbjct: 279 AIHSDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFMSSYTNTVPTPDGGTHETGMR 338 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 SAL R I + E++ K S+ +D G +LS+ + +P F QTK++L ++E + Sbjct: 339 SALLRGIRDHAERTGQ-GKKASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQ 397 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +VE V D WL +P +A ++ +++ + R R ++ RK + LPGK Sbjct: 398 RIVEQAVKDPFDHWLSGNPTQANKLLDFIIERADERLRRRAEKE-ISRKTAVKKLRLPGK 456 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADC+ + SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV A DKM+++ + Sbjct: 457 LADCTNTATEGSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATRDKMVANAQ 516 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 + LI A+G GIG ++ + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI G Sbjct: 517 LSDLIQAIGCGIG-INYREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDGGH 575 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD 593 LY+ PPLY +T G Y +DE ++ L + + KG+ + N + + Sbjct: 576 LYLAVPPLYRMTHGSKTLYARDEAHRDELLKKEFHANAKVEIGRFKGL--GEMMPNQLKE 633 Query: 594 ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 P K + + V++ + + + SK R FI EK+E Sbjct: 634 TT--------MDPR--KRTLLRVVLATEDRDSTATSVERLMGSKAEARFEFITEKAE 680 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREF 791 + + R+KGLGEM +QL ETT++P R+LLRV + D RLMG + E R EF Sbjct: 615 VEIGRFKGLGEMMPNQLKETTMDPRKRTLLRVVLATEDRDSTATSVERLMGSKAEARFEF 674 Query: 792 IQENS 796 I E + Sbjct: 675 ITEKA 679 >gi|227496601|ref|ZP_03926879.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226833881|gb|EEH66264.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 690 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 275/642 (42%), Positives = 381/642 (59%), Gaps = 34/642 (5%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+ D I V Sbjct: 23 SGEYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGFCDHIEV 81 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP D H E EV+MT LHAGGKF Y VSGGLHGVG+S Sbjct: 82 TIQADGGLKVVDNGRGIPVDEHPTEHRPTVEVVMTVLHAGGKFGGGGYAVSGGLHGVGIS 141 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS+ + ++R+G+++ MSF + G PL V G TGT F P +IF Sbjct: 142 VVNALSTRVDTEVRRQGHVWRMSFGDGGHPKTPL-VMGEETEATGTTQIFYPDPEIFETV 200 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP---------------------REITMF 224 F+Y+TL+ R ++++FLN ++I+L D+R R+++ Sbjct: 201 QFDYETLRRRFQQMAFLNKGLRITLTDEREGVNDDGDEITGDEAGTADDPVKGKRQVSYC 260 Query: 225 YKGGIEAFVSYLDRHKKPL--MQSPIRIQGSR-----DNISIDLAMRWNDGYHENVLCFT 277 Y G+ +V++L++ KK I + + IS+++AM+W Y E+V + Sbjct: 261 YANGLHDYVAFLNKSKKVELIHPEIIDFEAEKALDETHGISLEIAMQWTSAYSESVHTYA 320 Query: 278 NNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP 337 N I +GGTH G R+ALT I Y + K ++ GDD REG T+V+S+K+ +P Sbjct: 321 NTINTTEGGTHEEGFRTALTTLINKYGREKGLIKDRDDNLTGDDIREGLTAVISVKLSEP 380 Query: 338 RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD 397 +F QTK KL ++E R+ V+ V D L WL+ HP +AK ++ K A+ R AAR+AR+ Sbjct: 381 QFEGQTKTKLGNTEARTFVQQTVYDRLGDWLDSHPADAKAVITKASQAAAARVAARKARE 440 Query: 398 LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKI 457 TRRKGVL+ AS+PGKL DCS R+ + E+F+VEGDSAGGSA GR E+QAI+P+RGKI Sbjct: 441 ATRRKGVLESASMPGKLRDCSSRNAAECEIFIVEGDSAGGSAVGGRDPEHQAIMPIRGKI 500 Query: 458 LNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLL 517 LNVE+AR D+ LSS I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG HI TLL Sbjct: 501 LNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQHIATLL 559 Query: 518 LTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCD 577 LT FR M LI G YI PPLY + + ++ D L+ L + Sbjct: 560 LTLLFRYMRPLIEQGHTYIAMPPLYRLKWSNAEHEFAYSDAERDQLLRAGAEAGRRLPKE 619 Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 I + ++D + + + +++A + Sbjct: 620 GG--IQRYKGLGEMNDHELWETTMDPAARILKQVTLDEAADA 659 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 56/88 (63%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL GR+ G +QRYKGLGEMN +LWETT++P R L +V + +A+ AD+ Sbjct: 604 QLLRAGAEAGRRLPKEG-GIQRYKGLGEMNDHELWETTMDPAARILKQVTLDEAADADET 662 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+VE RR FIQ N+ LDI Sbjct: 663 FSILMGDDVEQRRSFIQRNAADVRFLDI 690 >gi|313123649|ref|YP_004033908.1| DNA topoisomerase iv subunit b [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280212|gb|ADQ60931.1| DNA topoisomerase IV subunit B [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 643 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 262/602 (43%), Positives = 368/602 (61%), Gaps = 9/602 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 1 MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 60 NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS++K+ + R+G YE F N G L G+ TGT +TF P IFS Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFKNGGHPIGTLRCLGATEEKTGTTITFKPDPMIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +NY+T+Q R+RE +FL V+ +L D+R+P Y GIE+FVSYL+ K Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTP-NHHDVFQYDDGIESFVSYLNEG-KGT 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +GS+D + I+ A +++D Y EN + F NN+ DGG+H G RS TR Y Sbjct: 237 IGKVFYFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + LS +L E+ A+ +VKK L A R+AA++ARD +R K L GKL R Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN +RA+ + ++EI T+I Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI PP Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I++ ++ Y +E ++ ++ F + + ++ ++ Sbjct: 536 LYRISKKQTNLYAWTDEERDEEEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595 Query: 601 IK 602 ++ Sbjct: 596 VR 597 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 37/64 (57%), Positives = 51/64 (79%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG ++QR+KGLGEMNA QLWETT+NP++R L+RV+I DA A+ + LMGD+ RR++ Sbjct: 563 KGYALQRFKGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKW 622 Query: 792 IQEN 795 I+EN Sbjct: 623 IEEN 626 >gi|308189672|ref|YP_003922603.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER] gi|307624414|gb|ADN68719.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER] Length = 637 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 266/590 (45%), Positives = 362/590 (61%), Gaps = 16/590 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YD SIQ LKGL+AV+KRP MYIG TD +GLHH+I+E++DN+IDE+L GYA+ I+VT Sbjct: 2 QKYDESSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGYANEISVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GS V DNGRGIP G SA E++ T LHAGGKFN+ +YK SGGLHGVG SV Sbjct: 61 LTKNGSVKVMDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS+ L + + R+ IYE F NG + G+ N GT V F P+ +IF Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNT-NKHGTMVEFWPNYEIFKRAK 178 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+T+ RLRE FL ++I D+ S RE Y+ G+ AFV +++ K L Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISD--RETEFMYEDGLHAFVDFINDSKNALG-D 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + ++ +I ++ ++ D Y+E VL F NN+ KDGGTH GL+SALT+ + + Sbjct: 236 IKTFKETKRDIEVECGFQYTDSYNETVLSFVNNVKTKDGGTHEIGLKSALTKTFNEFALE 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K + GDD REG T +LS+K+P+ F SQTKEKL + E + VVE V+ Sbjct: 296 EKALK-GKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEEIVSKNF 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRAR--DLTRRKGVLDIASLPGKLADCSERDP 422 W+ E+ AK I++K+ AS R AAR+AR + + + + L GKL + P Sbjct: 355 KIWINENKPLAKKILEKIKRASESRAAARKARVEARSTKNALKEKQILSGKLTPAQSKIP 414 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR ++L ++EIGT+I +G Sbjct: 415 AEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGTIINTIG 474 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 G+G D FD+ K++Y K++IMTDAD DGAHI+ LLLTFFFR M L+ NG +YI PPL+ Sbjct: 475 AGVG-DEFDLKKVQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIALPPLF 533 Query: 543 GITR---GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +T K + Y DE L + L + G ++ + L Sbjct: 534 KLTSTRGKKEVLYAWDENELRELLQLPNFKNAEVQRYKGLGEMNADQLWE 583 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 41/64 (64%), Positives = 51/64 (79%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K +QRYKGLGEMNA QLWETT+NP TR+L++VKI DA+ A+ S LMGD VEPR+E+ Sbjct: 563 KNAEVQRYKGLGEMNADQLWETTMNPITRTLVQVKIEDAALAERRVSTLMGDNVEPRKEW 622 Query: 792 IQEN 795 I +N Sbjct: 623 INKN 626 >gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111] gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111] Length = 620 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 260/598 (43%), Positives = 386/598 (64%), Gaps = 6/598 (1%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 RP MYIG T E GLHH+++E++DN+IDE+L G+A I V + D S TV D+GRGIP Sbjct: 1 MRPGMYIGSTSKE-GLHHLVWEIVDNSIDEALAGFAGHIKVYIEPDNSITVVDDGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A E + T LHAGGKF YKVSGGLHGVG SVVNALS+ L +++ + G + Sbjct: 60 DIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKNGKV 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNS 204 + + G++ N L + G + +GT V F P +IF+ F++D L R++EL+FLN Sbjct: 120 HYQEYQRGVVVNDLEIIGDT-DLSGTTVHFTPDPEIFTETTVFDFDKLAKRIQELAFLNR 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++IS+ DKR + E Y+GGI ++V +++ +K+ + ++PI G D IS+++AM+ Sbjct: 179 GLRISISDKREGQEVEKEYHYEGGIGSYVEFINENKEVIFENPIYTDGELDGISVEVAMQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 + GY E V+ F NNI +GGTH G R+ALTR I Y +K+ K+++ ++ G+D RE Sbjct: 239 YTTGYQETVMSFANNIHTHEGGTHEQGFRTALTRVINDYAKKNKILKENEDNLTGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+V+S+K P+P+F QTK KL +SEV + ++ + +L E+P AK IV+K + Sbjct: 299 GLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFNRFLLENPQVAKKIVEKGIL 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR++TR+K L+I++LPGKLADCS + + +ELF+VEGDSA GSAK GR+ Sbjct: 359 ASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNNAEMNELFIVEGDSAEGSAKSGRN 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 RE QAILP+RGKILNVE+A DK+L+++EI +L TA+GTG G D FD++K+RY K++IMT Sbjct: 419 REFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGAD-FDVSKVRYQKLVIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DADVDGAHIRTLLLT +R M ++ G++YI +PP+YG+ + S + + Sbjct: 478 DADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGV-KVGSEIKAYIQPGVNQ-EE 535 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 + + SK + + +DD + + + ++ A + Sbjct: 536 ELRQALDTYSSGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVSVDDAAEADKI 593 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 2/105 (1%) Query: 699 ENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPD 758 + I + I G + LDT +S GR ++QRYKGLGEM+ QLWETT++P+ Sbjct: 518 KVGSEIKAYIQPGVNQE-EELRQALDT-YSSGRSKPTVQRYKGLGEMDDHQLWETTMDPE 575 Query: 759 TRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSALDI 803 R + RV + DA++AD +F LMGD VEPRREFI+ N++ S LDI Sbjct: 576 NRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEANAVYSNLDI 620 >gi|184155379|ref|YP_001843719.1| DNA topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956] gi|183226723|dbj|BAG27239.1| topoisomerase IV subunit B [Lactobacillus fermentum IFO 3956] Length = 665 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 265/660 (40%), Positives = 368/660 (55%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA SI+ILKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTDAH-GLHHLVYEIVDNAVDEALSGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D + TV D+GRG+P +H E G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS L L I R+ Y+ F + G L G +GT VTF P Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y TL RLRE +FL V+I+L DKR +E + GIE FV+YL+ Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFANGIEDFVAYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + G++D + +D+A ++NDGY EN+L F NN+ GGTH G R A T+ Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K K+ +++ G D REG T+V+S+++P+ +F QTK KL + E R +V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 ++ V++ L L E+ A+ ++K + R + + ++ +L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589 YI PPLY + + + Y + L L + G ++ + L Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593 Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 I+DA +K I N + E + F DQE + + +K Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +V +L + + + N D ++ + Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I + R+ + L G KIT L + G KG S+Q Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMG++VEPRRE+I +N Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635 >gi|315646515|ref|ZP_07899633.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453] gi|315278158|gb|EFU41478.1| DNA topoisomerase IV, B subunit [Paenibacillus vortex V453] Length = 659 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 262/598 (43%), Positives = 367/598 (61%), Gaps = 25/598 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S YDAD IQ+L+GL AV+KRP MYIG T SGLHH+++E++DNA+DE L Y I +T Sbjct: 20 SGYDADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKYCSRIEIT 78 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS TV DNGRGIPT +H + GI +V+ T LHAGGKF YK SGGLHGVG SV Sbjct: 79 LHKDGSATVYDNGRGIPTGMH-KTGIPTPQVVFTILHAGGKFGGSGYKKSGGLHGVGASV 137 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTEVTFLP 177 NALS WL++ I REG ++ F G L V G+ N TGT++TF P Sbjct: 138 TNALSEWLEVEIYREGKVHRQRFEYWQDAKGKEHVGEPVTGLEVHGNT-NKTGTKITFKP 196 Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 + +F+ NYDTL RL+E++FLNS ++I L D+RS FY+GG FV +L Sbjct: 197 DARVFTTGTHLNYDTLAERLQEIAFLNSGLRIVLKDERSG--NGEEFFYEGGASQFVQFL 254 Query: 237 DRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + K L I +D+I +++A+++N GY E + F N+IP + GGTH +G ++A Sbjct: 255 NEGKDVLH-DVIHFYAEKDDIEVEIALQYNAGYTETLASFVNSIPTRGGGTHETGFKTAY 313 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 TR + Y K+ K+ +++ G+D REG +V+S+KM + F QTK++L S+ RS V Sbjct: 314 TRVMNDYARKNNLLKEKDKNLEGNDLREGMMTVISVKMAEVEFVGQTKDQLGSASARSTV 373 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLA 415 +S V + + +LEE+P A+ ++KK + AS R+AAR+ARD R K + ++L GKL Sbjct: 374 DSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREAARKARDEMRSGKKRSESSNLGGKLT 433 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 +D ++ELF+VEGDSAGGSAKQGR + QAILPL+GK +N E+++ +L + E Sbjct: 434 PAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADILKNDEYR 493 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +++A+G GIG F Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +Y Sbjct: 494 AIVSAIGAGIG-TEFTAGDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIDEGRVY 552 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 + +PPLY I + ++++Y E L +YL G ++ L Sbjct: 553 LAQPPLYKIASKSGKLETIRYAWTEGQLANYLKE--FKNYELQRYKGLGEMNPEQLWE 608 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 105/295 (35%), Gaps = 11/295 (3%) Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 D G+ + + + + + L + + ++ ++ + Sbjct: 362 DQLGSASARSTVDSIVTEKMQIFLEENPQVAQTLLKKAIQASKAREA-ARKARDEMRSGK 420 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 SE L SK+ R + K + N E Sbjct: 421 KRSESSNLGGKLTPAQSKDFSRTELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 480 Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 + ++ + ++ I + +N ++ + + +F Sbjct: 481 SKLADILKNDEYRAIVSAIGAGIGTEFTAGDSNYSKIIIMTDADTDGAHI--QVLLLTFF 538 Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKITGPC------SLLDTIFSIGRKGISMQRYK 740 +Y + + K+ L + + K +QRYK Sbjct: 539 YRYMKPLIDEGRVYLAQPPLYKIASKSGKLETIRYAWTEGQLANYLKEF--KNYELQRYK 596 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GLGEMN QLWETT+NP++R+LL+V+I DA++A+ S LMGD+V+PR+ +I EN Sbjct: 597 GLGEMNPEQLWETTMNPESRTLLQVQIDDAAKAERRVSTLMGDKVDPRKRWIVEN 651 >gi|300812413|ref|ZP_07092843.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496580|gb|EFK31672.1| DNA topoisomerase IV, B subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 643 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 262/602 (43%), Positives = 369/602 (61%), Gaps = 9/602 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ G+ I Sbjct: 1 MPKNTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGFGQEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 60 NVTIHEDNSVTVQDFGRGMPTGMHAS-GRPTIEVILTVLHAGGKFTEQNYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS++K+ + R+G YE F N G L G+ TGT +TF P IFS Sbjct: 119 SSVVNALSSYMKVHVVRDGKAYEEEFQNGGHPIGTLRCLGATKEKTGTTITFKPDPIIFS 178 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 +NY+T+Q R+RE +FL V+ +L D+R+P+ Y GIE+FVSYL+ K Sbjct: 179 TTKYNYETIQERIRESAFLLKGVKFTLTDERTPK-HHDVFQYDDGIESFVSYLNEG-KGT 236 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + +GS+D + I+ A +++D Y EN + F NN+ DGG+H G RS TR Y Sbjct: 237 IGKVFCFEGSQDGMEIEFAGQYSDSYSENFVSFVNNVRTADGGSHEVGARSGFTRAFNDY 296 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V+S V Sbjct: 297 AKKQGLLGKKDKNLEGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDSIVY 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + LS +L E+ A+ +VKK L A R+AA++ARD +R K L GKL R Sbjct: 357 EKLSYYLLENGEWAQDLVKKALRARDAREAAKKARDESRNGKKRHKKEVLSGKLTPAQSR 416 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN +RA+ + ++EI T+I Sbjct: 417 NPKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQRAKLADIFKNEEINTMIHT 476 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF+R M +I G +YI PP Sbjct: 477 IGAGVG-TEFKVEDSNYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMIEAGKVYIALPP 535 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I++ ++ Y +E ++ ++ F + + ++ ++ Sbjct: 536 LYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRFKGLGEMNADQLWETTMNPESRMLIR 595 Query: 601 IK 602 ++ Sbjct: 596 VR 597 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ ++ I + +N D ++ + Sbjct: 453 VLNTQRAKLADIFKNEEINTMIHTIGAGVGTEFKVEDSNYDKIIIMTDADDDGAHI--QI 510 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPC-SLLDTIFSIGRKGISMQRY 739 + +F +Y R + + + + D KG ++QR+ Sbjct: 511 LLLTFFYRYMRPMIEAGKVYIALPPLYRISKKQTNLYAWTDEERDEDEKKVGKGYALQRF 570 Query: 740 KGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 KGLGEMNA QLWETT+NP++R L+RV+I DA A+ + LMGD+ RR++I+EN Sbjct: 571 KGLGEMNADQLWETTMNPESRMLIRVRIDDAQLAERRVTTLMGDQASARRKWIEEN 626 >gi|227515151|ref|ZP_03945200.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227086483|gb|EEI21795.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|299783206|gb|ADJ41204.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum CECT 5716] Length = 665 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 265/660 (40%), Positives = 369/660 (55%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA SI+ILKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTDAH-GLHHLVYEIVDNAVDEALSGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D + TV D+GRG+P +H E G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS L L I R+ Y+ F + G L G +GT VTF P Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVRYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y TL RLRE +FL V+I+L DKR +E ++ GIE FV+YL+ Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFENGIEDFVAYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + G++D + +D+A ++NDGY EN+L F NN+ GGTH G R A T+ Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K K+ +++ G D REG T+V+S+++P+ +F QTK KL + E R +V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 ++ V++ L L E+ A+ ++K + R + + ++ +L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589 YI PPLY + + + Y + L L + G ++ + L Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593 Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 I+DA +K I N + E + F DQE + + +K Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +V +L + + + N D ++ + Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I + R+ + L G KIT L + G KG S+Q Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMG++VEPRRE+I +N Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635 >gi|295426266|ref|ZP_06818926.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus amylolyticus DSM 11664] gi|295064005|gb|EFG54953.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lactobacillus amylolyticus DSM 11664] Length = 662 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 258/605 (42%), Positives = 372/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + ++YD SIQIL GL+AV+KRP MYIG TD GL+ ++YE++DN++DE++ GY I Sbjct: 17 KANTYDDSSIQILHGLEAVRKRPGMYIGSTD-IHGLNQLVYEIVDNSVDEAMAGYGKEIN 75 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H + G EVI+T LHAGGKF +++YK SGGLHGVG Sbjct: 76 VTIHKDNSVTVRDFGRGMPTGMH-KSGKPTIEVILTVLHAGGKFTEQNYKTSGGLHGVGS 134 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS+LK+R+ R G YE F N G L G + TGT +TF P + IFS Sbjct: 135 SVVNALSSYLKVRVVRGGKAYEEEFQNGGHPIGTLKCVGETNDKTGTTITFKPDATIFST 194 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T+Q R+RE +FL V+ +L D+R PE Y GI++FV YL+ K + Sbjct: 195 TKYKYETIQERIRESAFLLKGVKFTLTDERDPE-HHDVFQYDDGIKSFVKYLNEG-KGTI 252 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D + I+ + +++DGY EN++ F NN+ DGGTH G RS TR Y Sbjct: 253 SDVFYFEGKQDGMEIEFSGQYSDGYSENLVSFVNNVRTADGGTHEVGARSGFTRAFNDYA 312 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K +++ G D REG ++VLS+K+P+ F QTK KL + + RS V++ V + Sbjct: 313 KKQGLFTKKDKNIDGSDYREGLSAVLSVKIPEELLEFEGQTKGKLGTPQARSAVDALVYE 372 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL ++ Sbjct: 373 KMSYYLMENGELAQELVKKAQRARDAREAAKKARDESRNGKKRRKKEVLSGKLTPAQSKN 432 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 433 PKKNELFLVEGDSAGGSAKQGRDRRFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIYTI 492 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G F ++ Y K+IIMTDAD DGAHI+ LLLTFF+R M +I G +YI PPL Sbjct: 493 GAGVG-TEFKVDDSNYDKVIIMTDADDDGAHIQILLLTFFYRYMRPMIEKGKVYIALPPL 551 Query: 542 YGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + +G+ ++Y +E L + ++ F + ++ + ++ ++ Sbjct: 552 YRLQKGRGKKAEIKYDWTDEELAEDEKKMGRGYSLQRFKGLGEMNAEQLWQTTMNPESRM 611 Query: 598 DKLIK 602 ++ Sbjct: 612 LIRVR 616 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLI---CNGDKIKIT---GPCSLLDTIFSIGRKGI 734 + +F +Y R + + G K +I L + +GR G Sbjct: 526 LLLTFFYRYMRPMIEKGKVYIALPPLYRLQKGRGKKAEIKYDWTDEELAEDEKKMGR-GY 584 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QR+KGLGEMNA QLW+TT+NP++R L+RV+I DA+ A+ + LMGD+V RR++I+E Sbjct: 585 SLQRFKGLGEMNAEQLWQTTMNPESRMLIRVRIDDAALAERRVTTLMGDKVAARRKWIEE 644 Query: 795 N 795 N Sbjct: 645 N 645 >gi|154508246|ref|ZP_02043888.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC 17982] gi|153797880|gb|EDN80300.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC 17982] Length = 674 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 276/649 (42%), Positives = 381/649 (58%), Gaps = 36/649 (5%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+DN +N SY A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+ Sbjct: 1 MADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GYAD I VT+ DG V DNGRGIP D H E EV+MT LHAGGKF Y V Sbjct: 60 LAGYADHIEVTIQEDGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG+SVVNALS+ + I+R+G ++ MSF N G PL G ++TGT F Sbjct: 120 SGGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLER-GEETDETGTTQVF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------S 215 P +IF +F+++TL+ R ++++FLN ++I+L D+R + Sbjct: 179 YPDPEIFETVEFDFETLRQRFQQMAFLNKGLRITLTDEREFATAEGDEIAGGEEALDKKT 238 Query: 216 PEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271 R ++ Y+ G+ +V Y + + + I + +S+++AM+W Y Sbjct: 239 KGHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSS 298 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 +V F N I +GG H G R+ALT + Y + + ++ GDD REG T+V+S Sbjct: 299 SVHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVIS 358 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 IK+ +P+F QTK KL ++E R+ V V L+ W + HP +AK I+ K A R A Sbjct: 359 IKLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIINKGQAAQAARVA 418 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 AR+AR+ TRRKGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA GR E QAIL Sbjct: 419 ARKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAIL 478 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 P+RGKILNVE+AR D+ LSS I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG Sbjct: 479 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQ 537 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI G +I PPLY I + + ++ ++ + Sbjct: 538 HIATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDEL---LAAGS 594 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 +G I + ++D + + + +++A + Sbjct: 595 AANRRLPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADA 643 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LWETT++P +R L +V + +A+ AD+ F+ LMGD+V+ RR FIQ N Sbjct: 606 IQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADADETFTILMGDDVDRRRTFIQRN 665 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 666 ATDVRFLDI 674 >gi|603237|gb|AAA57341.1| DNA gyrase B subunit [Mycoplasma gallisepticum] gi|1583652|prf||2121321A DNA gyrase:SUBUNIT=B Length = 646 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 241/598 (40%), Positives = 356/598 (59%), Gaps = 16/598 (2%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +N + Y + SI++L+GL AV+KRP MYIG TD + GLHHMI+E++DN++DE + GY Sbjct: 2 NNTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTD-QKGLHHMIWEIIDNSVDEMMAGYGT 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 + +TL + V D+GRGIP D+H++ S E ++T LHAGGKF+ +Y +SGGLHG Sbjct: 61 TVKLTLKDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKFDSDTYSMSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 VG SVVNALSS K+ + R+ I+ + F + G+ PL + G+ GT + F+P I Sbjct: 121 VGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVSLKPLEIIGTDNKKQGTRIQFVPDFSI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 +++ + R+ +L+FLN ++ D+R+ + + Y+GGI+ +V L+ K+ Sbjct: 181 MEQFEYDETIISDRIEQLAFLNKGIKFIFNDERTDKKTKQEWLYEGGIKQYVENLNASKE 240 Query: 242 PLMQSPIRIQGS----------RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 P++ I + + +++A ++ +GY+ + F NNI GGTH G Sbjct: 241 PIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQYTNGYYNSTYSFCNNIHTNQGGTHEEG 300 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 LR R +EK K+ + +D EG T+++SIK +P++ QTK++L ++E Sbjct: 301 LRMLFIRSYRYALEK-KFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTE 359 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP 411 VR S V++ L + E+P EA I K + A R + A + RK + ASLP Sbjct: 360 VREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAA-LESARKSPFESASLP 418 Query: 412 GKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSS 471 GKLADC+ +D SEL++VEGDSAGGSAK GR R QAILPLRGK+LNVE+A +K+ + Sbjct: 419 GKLADCTTKDG-ISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKN 477 Query: 472 QEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHN 531 +EI TLITA+G G+ F ++K+RY+KIIIMTDADVDGAHIR LLLTFFFR M LI Sbjct: 478 EEIRTLITAIGAGV-NPEFSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEK 536 Query: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY ++ K +Y+ + LE++ G + L Sbjct: 537 GHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNPNVRYELQRYKGLGEMDDVQLWE 594 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 5/185 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLE 678 V N E + ++ + I + + ++ V +L Sbjct: 463 VLNVEKANHEKIFKNEEIRTLITAIGAGVNPEFSLDKIRYNKIIIMTDADVDGAHIRILL 522 Query: 679 GSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQR 738 + F I + L +S I L + +QR Sbjct: 523 LTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQNKY--IYSDAQLEEWKNQNPNVRYELQR 580 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEM+ QLWETT++P+ R LL+V I DA+ AD FS LMGDEV PRR+FI++N+ Sbjct: 581 YKGLGEMDDVQLWETTMDPEKRILLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKS 640 Query: 799 S-ALD 802 +D Sbjct: 641 VKNID 645 >gi|300742652|ref|ZP_07072673.1| DNA gyrase, B subunit [Rothia dentocariosa M567] gi|300381837|gb|EFJ78399.1| DNA gyrase, B subunit [Rothia dentocariosa M567] Length = 676 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 268/617 (43%), Positives = 370/617 (59%), Gaps = 37/617 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y A I +L+GL+AV+KRP MYIG T E GLHH++YEV+DN++DE+L GY Sbjct: 1 MTSE-QPHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I VT+ DG V D+GRGIP D H E S EV+MT LHAGGKF Y VSGGL Sbjct: 59 ASHIEVTIQADGGVRVQDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG+SVVNALS + + R+G + +SF N GI D PL G A TGT TF P Sbjct: 119 HGVGISVVNALSKKVITEVHRQGYSWHISFANGGIPDGPLRR-GKASQKTGTIQTFYPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215 +IF +F+++TL+ R ++++FLN + ISL D+R Sbjct: 178 EIFETVEFDFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRV 237 Query: 216 ----PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDG 268 R +T Y G+ +V + K + + I + ++++++AM+W Sbjct: 238 GANAEGHRTVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAEDTVRHMALEVAMQWTGS 297 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V + N I +GGTH G R+ALT + Y ++ + ++ G+D REG T+ Sbjct: 298 YKESVHSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 357 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+SIK+ +P+F QTK KL +SE +S + +ND ++ W + +P AK +V++ + A+ Sbjct: 358 VISIKISEPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQA 417 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+ TRRKG+L+ +S+PGKL DC+ +DP SE++LVEGDSAGGSA QGR +Q Sbjct: 418 RMAARKARETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQ 477 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILNVERAR D+ LS+ EI +ITA GTGIG D FD+ K RYHKI++M DADV Sbjct: 478 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDLEKARYHKIVLMADADV 536 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQS 567 DG HI TLLLT FR M LI G++Y+ +PPLY I + YV + ++ L Sbjct: 537 DGQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQ 596 Query: 568 LSEEIELFCDSKGVISK 584 + + Sbjct: 597 AKNQRLPKDNGIQRYKG 613 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++P R+LL+VK+ DA+ AD +FS LMG++VE RR+FIQ+N Sbjct: 608 IQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMEDAAAADQIFSVLMGEDVEARRDFIQQN 667 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 668 AKDIRFLDI 676 >gi|183238622|gb|ACC60952.1| DNA gyrase subunit B [Mycoplasma feliminutum] Length = 549 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 251/550 (45%), Positives = 355/550 (64%), Gaps = 4/550 (0%) Query: 37 GESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAA 96 G+ GLHH++YE++DN+IDE+L G+A + V + D V D+GRGIP D+H + + Sbjct: 3 GKKGLHHLVYEIVDNSIDEALAGFATRVDVEILKDNYIRVKDDGRGIPVDIHPKTNKTTV 62 Query: 97 EVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILD 156 E ++T LHAGGKFN +YKVSGGLHGVG SVVNALSS+LK+ + R+G Y + G Sbjct: 63 ETVLTVLHAGGKFNNDAYKVSGGLHGVGASVVNALSSYLKVEVFRDGFYYYQEYSIGKPT 122 Query: 157 NPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRS 215 L + GT +TF P DIF F YD L+ RL++L+FLN + I+L D+R Sbjct: 123 IELKK-EPSNLSNGTIITFKPDVDIFKETTEFEYDILKQRLQQLAFLNKGLIITLKDQRQ 181 Query: 216 PEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLC 275 +P E T Y GG+ +V++L++ K+ L + PI I+ + ++I++++A+ +N+ + N+ Sbjct: 182 EQPIEDTFVYSGGLLEYVNFLNKGKETLNKEPIYIEKTENDINVEIALLYNNEFKANIFS 241 Query: 276 FTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMP 335 F NNI +GG H G + AL+R I Y + K + G+D REG V+S+K+ Sbjct: 242 FANNIATPEGGMHEDGFKMALSRIINRYGNNNN-LFKKAEQITGEDTREGLVCVISVKLK 300 Query: 336 DPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRA 395 P F QTK KL + EV+ +V + + L +L E+P EAK+I++K++ AS R+AAR+A Sbjct: 301 QPEFEGQTKSKLGNPEVKPLVSNIFGEQLERYLMENPQEAKLIIEKIILASNARNAARKA 360 Query: 396 RDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRG 455 R+ TRRK LD KL+DC ++ +ELF+VEGDSAGGSAKQGR + QAILPLRG Sbjct: 361 REATRRKSPLDTLGFASKLSDCRTKNADIAELFIVEGDSAGGSAKQGRDSKIQAILPLRG 420 Query: 456 KILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRT 515 K+LNVE+AR DK+ ++ E+ +LI ALG GIG D FD +K RY KI+IMTDADVDGAHIRT Sbjct: 421 KVLNVEKAREDKVYANNELKSLIMALGCGIG-DEFDASKTRYKKIVIMTDADVDGAHIRT 479 Query: 516 LLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELF 575 LLLTFFFR M +I G+LYI +PPL+ I+ GK ++YV ++ LE L + Sbjct: 480 LLLTFFFRYMKDIIQKGYLYIAQPPLFKISSGKKIKYVYTDQELEKELKELNDQRYNLQR 539 Query: 576 CDSKGVISKN 585 G ++ Sbjct: 540 YKGLGEMNPE 549 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 2/129 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E +E V ++L + + + + S +V V + Sbjct: 422 VLNVEKAREDKVYANNELKSLIMALGCGIGDEFDASKTRYKKIVIMTDADVDGAHIRTLL 481 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK-ITGPCSLLDTIFSIGRKGISMQRY 739 F F I + L I +G KIK + L + + + ++QRY Sbjct: 482 LTFFFRYMKDIIQKGYLY-IAQPPLFKISSGKKIKYVYTDQELEKELKELNDQRYNLQRY 540 Query: 740 KGLGEMNAS 748 KGLGEMN Sbjct: 541 KGLGEMNPE 549 >gi|83280994|dbj|BAE53571.1| gyrase beta subunit [Thermoplasma acidophilum] Length = 641 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 257/596 (43%), Positives = 370/596 (62%), Gaps = 18/596 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + +YD+ IQIL+GL AV+K P MYIG TD GLHH++YEV+DN++DES+ GY I Sbjct: 1 MTEDNYDSSQIQILEGLKAVRKVPGMYIGSTD-TRGLHHLVYEVVDNSVDESVAGYCSRI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V + DGS TV D+GRGIP D+H + E+++T LH+G KF++K YK++GGLHGVG Sbjct: 60 YVVMGSDGSITVEDDGRGIPVDIHPKYNRPGLEIVLTELHSGAKFDKKVYKLTGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV-----------TGSAGNDTGTEV 173 + VVNALS L +KR+G IY F GI + L + G + Sbjct: 120 LHVVNALSKKLIAVVKRDGKIYYDIFEQGIPVSGLKTASDVSEIEKLGIKIQFPEHGAII 179 Query: 174 TFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFV 233 F P DIF +F+Y+T+ RL +LS+LN + I+ +D+ S R+ + ++GG+ V Sbjct: 180 KFYPDPDIFETTEFSYETILARLTDLSYLNPQLTITFLDEASG--RKDILHHEGGLIELV 237 Query: 234 SYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L K+ LM P+ ++ D+ ++ ++ + E ++ F NNI +GGTH++G Sbjct: 238 RHLSEGKEALM-EPLYLKEEVDSHMVEFSLLYTTDVQETLMSFVNNISTPEGGTHVAGFH 296 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 L+R I Y + K + + GDD +EG +VL +KM +P+F QTK KL +S VR Sbjct: 297 QGLSRAIQDYARSNNKIKGVE-DITGDDVKEGVIAVLHVKMQNPQFEGQTKSKLGNSSVR 355 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +V+S + ++E +P A +I+ +VL A+ R+A+R+A++L RRK L+ LPGK Sbjct: 356 GIVQSVTAKFMKTFMETNPHVADVIIGRVLSAAAAREASRKAKELVRRKSALEGGGLPGK 415 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 LADCS DP SEL++VEGDSAGGSAKQ R+R+ QA+LPLRGKILNVE+A K++ ++ Sbjct: 416 LADCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEI 475 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I L+ A+GTG+ +D + KLRY KIIIMTDADVDGAHIRTLLLTFFFR SLI NG Sbjct: 476 IHDLVVAIGTGVKEDL-NPKKLRYGKIIIMTDADVDGAHIRTLLLTFFFRYARSLIENGN 534 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 ++ +PPLY I +G++++YV +E E + I G ++ L Sbjct: 535 VFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPN-AIIQRFKGLGEMNPEQLWE 589 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 15/236 (6%) Query: 569 SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQ 628 +S+ I + D + + +E+A V E Sbjct: 418 DCSSNDPSNSELYIVEGDSAGGSAKQARNRQYQAVLPLRGKILNVEKASDMKVVENEIIH 477 Query: 629 EINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSK 688 ++ V++ + + LN + K + + D R + +F + Sbjct: 478 DLVVAIGTGVKEDLNPKKLRYGKIIIMTDADVDGAHIRT-------------LLLTFFFR 524 Query: 689 YKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 Y R + I G ++ + + +QR+KGLGEMN Sbjct: 525 YARSLIENGNVFFAEPPLYRIQKGQNVRYVYSDEEKERVSREFGPNAIIQRFKGLGEMNP 584 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALD 802 QLWETT+NP TR L++V I DA +A+ +F+ LMG++VEPRR+FI+EN++ + +D Sbjct: 585 EQLWETTMNPKTRKLVQVTIEDAEEAERIFTILMGEKVEPRRKFIEENAVYAENID 640 >gi|228982416|ref|ZP_04142675.1| DNA topoisomerase [Bacillus thuringiensis Bt407] gi|228776599|gb|EEM24907.1| DNA topoisomerase [Bacillus thuringiensis Bt407] Length = 644 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 255/651 (39%), Positives = 377/651 (57%), Gaps = 19/651 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + Y+ DSI+IL+GL+AV+KRP MYIG T+ GLHHMI E+ DN++DE++ GY D I Sbjct: 2 SEEYNGDSIEILEGLEAVRKRPGMYIGSTN-TKGLHHMIKEITDNSVDEAVAGYCDEIIT 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 ++ D S ++ DNGRG+P D+H++ G S A VI T LHAGGKF YKVSGGLHGVG S Sbjct: 61 RIHKDNSISIEDNGRGVPVDVHRKAGYSTARVIYTILHAGGKFGGNGYKVSGGLHGVGAS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGS-----AGNDTGTEVTFLPSSD 180 VVNALSS+L++ I R G IY+ + N G+ PL G + GT+V FLP + Sbjct: 121 VVNALSSYLEVEIHRNGKIYKDRYENGGVPVIPLTENGELPSIGDTDRRGTKVRFLPDNT 180 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 I ++N +T++ RL+E +FLN ++ ID+R+ E T K GI V ++ Sbjct: 181 ILETTEWNIETIEKRLQESAFLNKGLKFVFIDERTG--YEKTFCEKDGIGGLVKEINHS- 237 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 KP + I G +I + +A ++ Y+E+++ + NNI GGTH+ GL+S +TR I Sbjct: 238 KPTLTDVISFSGVSKDIEVQIAFQYVQEYNEHLISYCNNIITPHGGTHIVGLKSGITRLI 297 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y ++ K ++ G R G +V+SI+ +P++ QTKEKL S++ + VE + Sbjct: 298 NGYAKELGLLKTKDNTIDGAHIRTGIVAVVSIRHSNPQYEGQTKEKLGSTDAKGAVEEVI 357 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + S + + H E K I++ + S +R+ ++RD + +K + + + S+ Sbjct: 358 KNEGSKFFDLHVEEVKRIIENAMRVSKIRETEEKSRDNSLQKKDAQLQTNGKLASASSKT 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 KK E++LVEGDSAGG+AKQ R R+ QAILP +GKI+NVE+AR DK+LS++EI ++I A Sbjct: 418 PVKKKEIYLVEGDSAGGTAKQARDRKTQAILPAKGKIINVEKARIDKVLSNEEIQSIIVA 477 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G G+ FDI+K+ Y +++IMTDADVDGAHIRTLLLTFF+R M LI G+++I PP Sbjct: 478 IGGGHGKA-FDISKVNYGRVVIMTDADVDGAHIRTLLLTFFYRYMRPLIEEGYVWIAVPP 536 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKL 600 LY I + K E S+ Y + +S + L K + L + D Sbjct: 537 LYQIVHEEQKGRKKVETSMYAYSDEELVSVKNLLGNKIKRIQRYKGLGE-MSATQLWDTT 595 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEK 651 + + IE A + K+A R FI ++ K Sbjct: 596 LNPETRKQIQVRIEDAKEADAVTELLM-------GDKVAPRREFIISEAHK 639 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 53/68 (77%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+A+QLW+TTLNP+TR ++V+I DA +AD + LMGD+V PRREFI Sbjct: 577 IQRYKGLGEMSATQLWDTTLNPETRKQIQVRIEDAKEADAVTELLMGDKVAPRREFIISE 636 Query: 796 SLPSALDI 803 + + +DI Sbjct: 637 AHKANIDI 644 >gi|293191018|ref|ZP_06609062.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] gi|292820705|gb|EFF79671.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309] Length = 674 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 277/649 (42%), Positives = 382/649 (58%), Gaps = 36/649 (5%) Query: 1 MSDNIQN----SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+DN +N SY A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+ Sbjct: 1 MADNEKNAEGEQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKV 116 L GYAD I VT+ DG V DNGRGIP D H E EV+MT LHAGGKF Y V Sbjct: 60 LAGYADHIEVTIQEDGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAV 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG+SVVNALS+ + I+R+G ++ MSF N G PL G ++TGT F Sbjct: 120 SGGLHGVGISVVNALSTRVNTEIRRQGYVWRMSFANGGTPITPLKR-GEETDETGTTQVF 178 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR--------------------S 215 P +IF +F+++TL+ R ++++FLN ++I+L D+R + Sbjct: 179 YPDPEIFETVEFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGGEEALDKKT 238 Query: 216 PEPREITMFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHE 271 R ++ Y+ G+ +V Y + + + I + +S+++AM+W Y Sbjct: 239 KGHRTVSYCYEHGLRDYVEYLDSAKKSETINNEIIDFEAENDEGTMSVEIAMQWTTAYSS 298 Query: 272 NVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLS 331 +V F N I +GG H G R+ALT + Y + + ++ GDD REG T+V+S Sbjct: 299 SVHTFANTINTTEGGMHEEGFRTALTSLVNRYGREKGIIRDKDDNLTGDDVREGLTAVIS 358 Query: 332 IKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDA 391 IK+ +P+F QTK KL ++E R+ V V L+ WL+ HP +AK I+ K A R A Sbjct: 359 IKLTEPQFEGQTKTKLGNTEARTFVAQQVYSKLTDWLDAHPADAKAIINKGQAAQAARVA 418 Query: 392 ARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAIL 451 AR+AR+ TRRKGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA GR E QAIL Sbjct: 419 ARKAREATRRKGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAIL 478 Query: 452 PLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGA 511 P+RGKILNVE+AR D+ LSS I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG Sbjct: 479 PIRGKILNVEKARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQ 537 Query: 512 HIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSE 570 HI TLLLT FR M LI G +I PPLY I + + ++ ++ + Sbjct: 538 HIATLLLTLLFRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDEL---LAAGS 594 Query: 571 EIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 +G I + ++D + + + +++A + Sbjct: 595 AANRRLPKEGGIQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADA 643 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LWETT++P +R L +V + +A+ AD+ F+ LMGD+V+ RR FIQ N Sbjct: 606 IQRYKGLGEMNDHELWETTMDPASRILKQVTLDEAADADETFTILMGDDVDRRRTFIQRN 665 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 666 ATDVRFLDI 674 >gi|269954816|ref|YP_003324605.1| DNA gyrase subunit B [Xylanimonas cellulosilytica DSM 15894] gi|269303497|gb|ACZ29047.1| DNA gyrase, B subunit [Xylanimonas cellulosilytica DSM 15894] Length = 681 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 267/616 (43%), Positives = 367/616 (59%), Gaps = 41/616 (6%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ N + YDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GY Sbjct: 1 MA-NRNDGGYDAGNITVLEGLEAVRKRPGMYIGST-GERGLHHLVTEVVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 AD I VTL DG V DNGRGIP +H EG EV+MT LHAGGKF Y VSGGL Sbjct: 59 ADTIDVTLLADGGVRVVDNGRGIPVAIHPTEGKPTVEVVMTILHAGGKFGGGGYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG+SVVNALS + I R+G + M F + G L +TGT TF Sbjct: 119 HGVGISVVNALSRRVVSEIARDGYHWRMEFADGGHPVGELQRL-EPTEETGTTQTFWADP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT----------------- 222 +IF +F+++TL+ R ++++FLN + I+L D+R+ Sbjct: 178 EIFETTEFDFETLRARFQQMAFLNKGLTITLTDERAGHADLEDEVVGEVPVPDADGVVVV 237 Query: 223 ---------------MFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAM 263 Y GG+ +V +L+ K + I + IS+++AM Sbjct: 238 DHDDDPSTPPARTVTYRYDGGLTDYVKHLNSSKRVDLIHPEVIDFESEDTERKISLEIAM 297 Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 +W Y E+V + N I +GGTH G R+A+T + SY + K+ + ++ GDD R Sbjct: 298 QWTSAYSESVHTYANTISTTEGGTHEEGFRAAMTNLVNSYAREKGILKEKEDNLTGDDIR 357 Query: 324 EGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVL 383 EG T+V+SIK+ +P+F QTK KL ++E ++ V+ V + L+ W + HP EAK +++K + Sbjct: 358 EGLTAVISIKLGEPQFEGQTKTKLGNTEAKTFVQRVVREQLTDWFDSHPNEAKDVIRKAI 417 Query: 384 DASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGR 443 AS R AAR+AR+ TRRKG+L +PGKL DC P++ E+++VEGDSAGGSA +GR Sbjct: 418 SASQARIAARKAREATRRKGLLSSGGMPGKLKDCQSNRPEECEIYIVEGDSAGGSAVRGR 477 Query: 444 SRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503 + NQAILP+RGKILNVERAR DK LS+ E+ +LITA GTGIG+D FD +KLRYHK+I+M Sbjct: 478 NPHNQAILPIRGKILNVERARLDKALSNLEVQSLITAFGTGIGED-FDASKLRYHKVILM 536 Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563 DADVDG HI TLLLT FR M LI G +Y+ PPLY + + + D Sbjct: 537 ADADVDGQHIATLLLTLLFRYMRPLIEQGHVYLAMPPLYRLKWSNAPHDYVYSDKERDAF 596 Query: 564 INQSLSEEIELFCDSK 579 I + L+ + D Sbjct: 597 IREGLANGKRMPKDKG 612 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 3/73 (4%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEM+ +LWETT++PD R+L +V + DA+ AD++FS LMG++VE RR F Sbjct: 611 KG--IQRYKGLGEMDYQELWETTMDPDHRTLRQVTMDDAAAADEIFSMLMGEDVESRRSF 668 Query: 792 IQENSLPSA-LDI 803 IQ N+ LDI Sbjct: 669 IQRNAKDVRFLDI 681 >gi|239930170|ref|ZP_04687123.1| DNA gyrase subunit B [Streptomyces ghanaensis ATCC 14672] Length = 687 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 286/649 (44%), Positives = 398/649 (61%), Gaps = 24/649 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D+ +SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYAD Sbjct: 27 DSEATASYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYAD 85 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHG Sbjct: 86 TIDVTILDDGGIRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 145 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ + + +K +G + + G+ PL A +TGT VTF DIF Sbjct: 146 VGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTSVTFWADPDIF 204 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYK 226 D++++TL R +E++FLN ++I+L D+R E + ++ Y+ Sbjct: 205 ETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKYEVKAVSYHYE 264 Query: 227 GGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 GGI FV Y R P+ + I ++ ++S+++AM+WN GY E V F N I Sbjct: 265 GGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQWNGGYTEGVYSFANIIHTH 324 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 +GGTH G R+ALT I Y + ++ GDD REG T+++S+K+ +P+F QT Sbjct: 325 EGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQT 384 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K KL ++EV++ V+ V + L+ WL+ +P EA IV+K + A+ R AAR+ARDLTRRKG Sbjct: 385 KTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKG 444 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 +L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+A Sbjct: 445 LLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKA 504 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R D++L +QEI +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR Sbjct: 505 RIDRILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFR 563 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 M L+ G +++ +PPLY I GK + D LI + DS Sbjct: 564 FMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFK 623 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + ++ T + A +F+ +++ Sbjct: 624 G--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 670 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 601 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 660 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR+FIQ N+ LDI Sbjct: 661 SVLMGEDVEARRQFIQRNAKDVRFLDI 687 >gi|260662108|ref|ZP_05863004.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN] gi|260553491|gb|EEX26383.1| DNA topoisomerase IV, B subunit [Lactobacillus fermentum 28-3-CHN] Length = 665 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 265/660 (40%), Positives = 367/660 (55%), Gaps = 30/660 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ YDA SI+ILKGL+AV+KRP MYIG TD GLHH++YE++DNA+DE+L G+ Sbjct: 1 MAQEEYK--YDASSIKILKGLEAVRKRPGMYIGSTD-VHGLHHLVYEIVDNAVDEALSGF 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQ-KSYKVSGG 119 D I VT+ D + TV D+GRG+P +H E G EVIMT LHAGGKF Q YK SGG Sbjct: 58 GDEINVTIEPDNAITVQDHGRGMPVGMH-ESGKPTPEVIMTILHAGGKFGQADGYKSSGG 116 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALSS L L I R+ Y+ F + G L G +GT VTF P Sbjct: 117 LHGVGASVVNALSSKLTLTIVRDHVCYQEKFRDGGQPIGTLKELGKTREGSGTTVTFKPD 176 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS ++Y TL RLRE +FL V+I+L DKR +E + GIE FV YL+ Sbjct: 177 PTIFSTTVYDYQTLARRLRESAFLLKGVKITLTDKREGMEQEEVFQFANGIEDFVDYLNE 236 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 K + G++D + +D+A ++NDGY EN+L F NN+ GGTH G R A T+ Sbjct: 237 D-KDTLGKVFSFTGTQDGVEVDVAAQYNDGYTENLLSFVNNVRTPGGGTHEVGFRGAWTK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K K+ +++ G D REG T+V+S+++P+ +F QTK KL + E R +V Sbjct: 296 TFNDYARKVGLLKERDKNLEGTDVREGLTAVVSVRIPERILQFEGQTKGKLGTPEARKIV 355 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVK--KVLDASMVRDAARRARDLTRRKGVLDIASLPGKL 414 ++ V++ L L E+ A+ ++K + R + + ++ +L GKL Sbjct: 356 DTIVSEQLGYALMENSDLAQSLIKKALRARQAREAARKARNQSRSGKRKGRKERNLSGKL 415 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 ++ K+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN E+A+ D ++ ++E+ Sbjct: 416 TPAQSKNSAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVMKNEEL 475 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T+I +G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF++ M +I G + Sbjct: 476 NTIIYTVGAGVG-TEFKVEDANYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGRV 534 Query: 535 YIIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN- 589 YI PPLY + + + Y + L L + G ++ + L Sbjct: 535 YIAMPPLYRLQKGRGKNTKITYAWTNDELTK-LTKKGSKGTSLQRFKGLGEMNADQLWET 593 Query: 590 ------------FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 I+DA +K I N + E + F DQE + + +K Sbjct: 594 TMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQNVHFTISDDQEADALVEAK 653 Score = 155 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +V +L + + + N D ++ + Sbjct: 458 VLNTEKAKLDDVMKNEELNTIIYTVGAGVGTEFKVEDANYDKIIIMTDADDDGAHIQILL 517 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLIC-NGDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + I + R+ + L G KIT L + G KG S+Q Sbjct: 518 LTFFYKYMRPMIEAGRVYIAMPPLYRLQKGRGKNTKITYAWTNDELTKLTKKGSKGTSLQ 577 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLWETT+NP+TR+L+RV+I DA A+ + LMG++VEPRRE+I +N Sbjct: 578 RFKGLGEMNADQLWETTMNPETRTLIRVRIEDAELAEKRITTLMGNKVEPRREWIDQN 635 >gi|310642463|ref|YP_003947221.1| DNA topoisomerase iv, b subunit [Paenibacillus polymyxa SC2] gi|309247413|gb|ADO56980.1| DNA topoisomerase IV, B subunit [Paenibacillus polymyxa SC2] Length = 659 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 259/603 (42%), Positives = 375/603 (62%), Gaps = 24/603 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 S Y AD IQ+L+GL AV+KRP MYIG T SGLHH+++E++DNA+DE L + Sbjct: 14 TQNGASEYGADDIQVLEGLVAVRKRPGMYIGSTSS-SGLHHLVWEIVDNAVDEHLAKFCS 72 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T++ DGS TVSDNGRGIPT +H + GI +V+ T LHAGGKF YK SGGLHG Sbjct: 73 RIDITMHKDGSVTVSDNGRGIPTGMH-KMGIPTPQVVFTILHAGGKFGGSGYKKSGGLHG 131 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN----------GILDNPLVVTGSAGNDTGTE 172 VG SV NALS WL++ I R+G I+ F G L V G+ N TG++ Sbjct: 132 VGASVTNALSEWLEVEIYRDGKIHRQRFEYWQDKKGVEHVGEPTTGLEVLGNT-NKTGSK 190 Query: 173 VTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 +TF P +F FNYDTL RL+E++FLNS ++I L D+RS + FY+GG Sbjct: 191 ITFKPDIRVFQSGIHFNYDTLAERLQEIAFLNSGLRIQLKDERSGKS--DEYFYEGGASQ 248 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291 FVS+L+ K L I +++I +++A+++N GY E + F N+IP + GGTH +G Sbjct: 249 FVSFLNEGKDVLH-DVIHFNAEKEDIEVEIAIQYNAGYTETIASFVNSIPTRGGGTHETG 307 Query: 292 LRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSE 351 ++A TR + Y K+ K+ +++ G+D REG +V+S+KM + F QTK++L S+ Sbjct: 308 FKTAYTRIMNDYARKTAMLKEKDKNLEGNDLREGMMAVISVKMAEVEFVGQTKDQLGSAS 367 Query: 352 VRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASL 410 RS V++ V++ + +LEE+P A+ +++K + AS R+AAR+ARD R K + ++L Sbjct: 368 ARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREAARKARDEMRSGKKRSESSNL 427 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 GKL+ +D ++ELF+VEGDSAGGSAKQGR + QAILPL+GK +N E+++ ++ Sbjct: 428 NGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEKSKLADIMK 487 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 + E + A+G G+G F + Y KIIIMTDAD DGAHI+ LLLTFF+R M LI Sbjct: 488 NDEYRAITAAIGAGVG-TEFTLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYRYMKELID 546 Query: 531 NGFLYIIKPPLYGITRG----KSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKND 586 G ++I +PPLY ITR ++++Y +E L++YL + E G ++ + Sbjct: 547 AGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGRNFE-LQRYKGLGEMNPDQ 605 Query: 587 LRN 589 L Sbjct: 606 LWE 608 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 107/293 (36%), Gaps = 6/293 (2%) Query: 507 DVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ 566 D G+ + + I + + + + ++ ++ + Sbjct: 361 DQLGSASARSTVDAIVSEQMQRFLEENPQIAQTLIRKAVQASKAREA-ARKARDEMRSGK 419 Query: 567 SLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES 626 SE L SK+ RN + K + N E Sbjct: 420 KRSESSNLNGKLSPAQSKDFTRNELFIVEGDSAGGSAKQGRDSKIQAILPLKGKPMNPEK 479 Query: 627 DQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFG 686 + ++ + I + +N ++ + F + Sbjct: 480 SKLADIMKNDEYRAITAAIGAGVGTEFTLEDSNYSKIIIMTDADTDGAHIQVLLLTFFYR 539 Query: 687 SKYKRIFSNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGISMQRYKGL 742 + I + RI + + K++ L + + GR +QRYKGL Sbjct: 540 YMKELIDAGRIFIAQPPLYKITRKSGKLETVRYAWTDEQLDNYLKEFGR-NFELQRYKGL 598 Query: 743 GEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GEMN QLWETT+NP++R+LLRV+I DA++A+ S LMGD+V+PR+ +I EN Sbjct: 599 GEMNPDQLWETTMNPESRTLLRVQIEDAAKAERRVSTLMGDKVDPRKRWIVEN 651 >gi|296127875|ref|YP_003635125.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109] gi|296019690|gb|ADG72926.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109] Length = 698 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 272/640 (42%), Positives = 384/640 (60%), Gaps = 31/640 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S+YDA +I +L+GL+AV+KRP MYIG T G GLHH++YEV+DN++DE+L GY D I VT Sbjct: 37 STYDASNITVLEGLEAVRKRPGMYIGST-GARGLHHLVYEVVDNSVDEALAGYCDTIEVT 95 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L DG V+DNGRGIP +H EG EV+MT LHAGGKF Y VSGGLHGVG+SV Sbjct: 96 LLADGGVRVTDNGRGIPVAIHPTEGRPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGISV 155 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALSS ++ +KR+G + SF + G L G A ++TGT TF IF + Sbjct: 156 VNALSSRVETVVKRDGYAWSQSFADGGKPVGELRQ-GPATDETGTSQTFWADGTIFETTE 214 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-------------------MFYKG 227 ++++TL+ R ++ +FLN ++ISL D+R Y G Sbjct: 215 YDFETLRARFQQYAFLNKGLKISLTDERPQHTGTEDEVTGETPSEAPATTARNVTYKYDG 274 Query: 228 GIEAFVSYLD--RHKKPLMQSPIRIQGSR--DNISIDLAMRWNDGYHENVLCFTNNIPQK 283 G+ +V +L+ + + I + IS+++A++W Y E+V F N I Sbjct: 275 GLVDYVKHLNSAKKVDHVHPDVIDFEAEDTTRRISVEIALQWTTAYSESVHTFANTISTT 334 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 +GGTH G R+A+T + Y K+ ++ GDD REG T+V+S+K+ +P+F QT Sbjct: 335 EGGTHEEGFRAAMTSLMNRYARDKGILKEKDENLTGDDIREGLTAVISVKLGEPQFEGQT 394 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K KL ++E + V++ VND L AWL+ HP EAK +++K + A+ R AAR+AR+ TRRKG Sbjct: 395 KTKLGNTEAKRFVQTVVNDQLGAWLDAHPSEAKDVIRKSIQAAAARMAARKAREATRRKG 454 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 +L+ S+PGKL DC +P + E+F+VEGDSAGGSA +GR+ QAI+P+RGKILNVERA Sbjct: 455 LLESNSMPGKLRDCQSNNPAECEVFIVEGDSAGGSAVRGRNPRTQAIMPIRGKILNVERA 514 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R DK L +QE+ LITA GTGIG+D FD++KLRYHKI++M DADVDG HIRTLLLT FR Sbjct: 515 RLDKALGNQEVQALITAFGTGIGED-FDVSKLRYHKIVLMADADVDGQHIRTLLLTLLFR 573 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 MP LI GF+Y+ +PPLY I + YV + + + + + + Sbjct: 574 YMPQLITGGFVYMAQPPLYRIKWSNAPHDYVYSDRERDAVITDGRANGRRLPKENGVQRY 633 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 +D + + + + +++A + Sbjct: 634 KG---LGEMDYTELWETTMSPEHRTLLQVTLDEAAAADEI 670 Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 38/69 (55%), Positives = 55/69 (79%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LWETT++P+ R+LL+V + +A+ AD++FS LMG++VE RR FIQ N Sbjct: 630 VQRYKGLGEMDYTELWETTMSPEHRTLLQVTLDEAAAADEIFSVLMGEDVEARRGFIQRN 689 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 690 AKDVRFLDI 698 >gi|42561045|ref|NP_975496.1| DNA topoisomerase IV subunit B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492542|emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321176|gb|ADK69819.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 643 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 257/598 (42%), Positives = 364/598 (60%), Gaps = 17/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++N + YD +IQ+L+GLDAV+KRP MYIG TD GLHH+++E++DNAIDE+L GY Sbjct: 1 MAENGK---YDESAIQVLEGLDAVRKRPGMYIGSTDN-RGLHHLVWEIVDNAIDEALAGY 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L D S T+SDNGRGIPT +H + G S EVI + LHAGGKF+ +YK SGGL Sbjct: 57 CTQIDVILEKDNSITISDNGRGIPTGMH-KTGKSTPEVIFSILHAGGKFDSTAYKSSGGL 115 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SV NALS K I R+ I+E+ F N G L+ PL + TGT + FLP Sbjct: 116 HGVGSSVTNALSKRFKATIYRDKKIHEIEFKNGGKLEKPLTFIANT-YKTGTTINFLPDD 174 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IFS FN+ + RL+E + LNS ++I+L D S E Y G+ F+ L Sbjct: 175 SIFSNTKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQY--GLVEFIKELVDD 232 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK + I I NI ++A+++ + +E +L F NN+ DGGTHL G +S L R Sbjct: 233 KKV-ITDIITINNESKNIIAEIALQYTEDDNEIILGFANNVKTSDGGTHLVGFKSGLIRA 291 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 I Y ++ K DK + +D REG +++++K+P+ + QTK KL +S+ ++VVE Sbjct: 292 INDYAKEQKILK-DKAKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVE 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLA 415 V + +S WL E+ + A I++ +A R AA++AR + + + GKL Sbjct: 351 QIVYEFMSYWLIENKVLANKIIENAFNAQKARIAAKQARQAIKSVKGKKNINKLMLGKLT 410 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 + + +EL+LVEGDSAGGSAK GR+R+ QAILPLRGK++N E+A+ +L ++EI Sbjct: 411 PAQGKKREINELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVINSEKAKLVDLLKNEEIQ 470 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 ++I A+G G+G+D FDI+ + Y KIIIMTDAD DGAHI+TLLLTFF+R M LI + +Y Sbjct: 471 SIINAIGAGVGKD-FDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIVHKKVY 529 Query: 536 IIKPPLYGITRGKSL-QYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 I PPLY IT Y+ DEE L ++ + EI+ + + + + +D Sbjct: 530 IALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYKGLGEMNADQLWQTTMD 587 Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 78/175 (44%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + +++ ++ + +N I K + S N ++ + Sbjct: 452 VINSEKAKLVDLLKNEEIQSIINAIGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLL 511 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYK 740 F + I ++ + + N L+ K +QRYK Sbjct: 512 LTFFYRHMKDLIVHKKVYIALPPLYKITFNDKSFIYLWDEEELNEFNKTNTKKYEIQRYK 571 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 GLGEMNA QLW+TT++P R +++V ITD A+ +F LMGD+VE R+ +IQEN Sbjct: 572 GLGEMNADQLWQTTMDPKNRKIIQVTITDGLLAERMFKTLMGDDVEKRKLWIQEN 626 >gi|19909651|dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii] Length = 467 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 278/469 (59%), Positives = 367/469 (78%), Gaps = 3/469 (0%) Query: 35 TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94 TD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +V+D+GRGIPT++H EE +S Sbjct: 1 TDDGTGLHHMVFEVVDNSIDEALAGHCKDIVVTIHEDNSVSVTDDGRGIPTEMHPEENVS 60 Query: 95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154 AAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R G+I+ ++ +G Sbjct: 61 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGE 120 Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 PL V G TGT++ F PS++ FS +F+YD L RLRELSFLNS V I L+D+R Sbjct: 121 PQAPLAVIGDTE-KTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDER 179 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENV 273 + ++GGI+AFV +L+ +K P+++ R++ IS+++AM+WNDG+ EN+ Sbjct: 180 EADK-SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENI 238 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 CFTNNIPQ+DGGTHL+G R+ALTR + S+++K SKK K + GDD REG T+V+S+K Sbjct: 239 YCFTNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVK 298 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 +PDP+FSSQTK+KLVSSEV+S VES + + LS +L E+P EAK++ K++DA+ R+AAR Sbjct: 299 VPDPKFSSQTKDKLVSSEVKSAVESAMGEKLSEFLIENPTEAKMVCSKIIDAARAREAAR 358 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL Sbjct: 359 KAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 418 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III Sbjct: 419 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467 >gi|28492972|ref|NP_787133.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist] gi|28572180|ref|NP_788960.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27] gi|28410311|emb|CAD66697.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27] gi|28476012|gb|AAO44102.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist] Length = 649 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 262/587 (44%), Positives = 367/587 (62%), Gaps = 9/587 (1%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +Y AD IQ+L+GL+AV++RP MYIG T G GLHH++YE++DN++DE+L GY Sbjct: 3 DTPEPAYGADQIQVLEGLEAVRRRPGMYIGST-GSRGLHHLVYELVDNSVDEALAGYCTK 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V + DG V+DNGRGIP D+H +EG+S +V++T LHAGGKF Y VSGGLHGV Sbjct: 62 INVAILADGGVRVTDNGRGIPVDIHPKEGVSTVQVVLTTLHAGGKFGSGGYSVSGGLHGV 121 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G SVVNALS L + + R+G ++ ++ G L N TGT +TF P DIF Sbjct: 122 GSSVVNALSKRLYVEVSRQGFVFRQNYEGGNPTAALERCEET-NATGTAITFWPDDDIFE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP-REITMFYKGGIEAFVSYLD--RHK 240 F Y+ L+ RL++++FLNS + +S+ D+R P T Y+ G+ +V Y + R Sbjct: 181 TVCFEYEVLRSRLQQMAFLNSGLTVSITDERVDSPTNNETYCYQNGLFDYVMYQNRIRKH 240 Query: 241 KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 +PL + I Q +S+++AMRW EN+ F N I +GGTH G R+ALT Sbjct: 241 EPLHEEIIHFQAENKDRLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFRAALTS 300 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + Y + K+ S+ G+D REG T+++S+K+ +P+F QTK KL ++E+R V Sbjct: 301 LVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLGNTEMRGYVHH 360 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 VN L W + HP +AK+I+ K L A+ R AA+RAR+ +R++G+ + S+PGKL +C Sbjct: 361 EVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREASRKRGLFESVSMPGKLKECQ 420 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 +DP SELF+VEGDSAGGSA QGR QA+LPLRGKILNVE+AR DK +++ EI ++ Sbjct: 421 AKDPAVSELFIVEGDSAGGSAIQGRDPLTQAVLPLRGKILNVEKARLDKAIANSEIQAML 480 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 TA G+GI + FD +K RYHKII+M+DADVDG HI TLLLT FR M LI +G++Y+ Sbjct: 481 TAFGSGI-AEDFDESKARYHKIILMSDADVDGQHITTLLLTLLFRYMRPLIESGYVYLAH 539 Query: 539 PPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 PPLY I S YV + + L LS + ++ Sbjct: 540 PPLYRIKWSNSEHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKG 586 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMN +LW+TT+NP TR+L ++ + D + AD++FS LMG++V+ RR+FIQ N Sbjct: 581 IQRYKGLGEMNYRELWDTTMNPATRTLRQITVDDVTLADEIFSVLMGEDVDSRRKFIQHN 640 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 641 ARDVRFLDI 649 >gi|134096626|ref|YP_001102287.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|291005720|ref|ZP_06563693.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] gi|133909249|emb|CAL99361.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338] Length = 630 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 252/570 (44%), Positives = 354/570 (62%), Gaps = 18/570 (3%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T GE GLHH++ EV+DN++DE++ GYA + VTL DG V D+GRGIP D+H Sbjct: 1 MYIGST-GERGLHHLVQEVVDNSVDEAMAGYATRVEVTLLADGGVRVVDDGRGIPVDMHP 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 E EV++T LHAGGKF SY VSGGLHGVGVSVVNALS+ L+ I G+++ Sbjct: 60 VEKKPTLEVVLTVLHAGGKFGGDSYAVSGGLHGVGVSVVNALSTALEAEIHLHGHVWRQR 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 + + + L G TGT +TF IF +N +T+ RL+E++FLN + I Sbjct: 120 YEDSKPVHDLQK-GERTTRTGTTITFWADPTIFETTRYNAETISRRLQEMAFLNKGLTIV 178 Query: 210 LIDKRSPEPR--------------EITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRD 255 L D+R+ E E T Y GG+E FV +++ K+P+ + + S Sbjct: 179 LRDERAAEEHEGGEDASGAAARATERTFHYPGGLEDFVRHINATKEPIHKKVVSFSASGK 238 Query: 256 NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKR 315 +++AM+WN GY+++V F N I +GGTH G RSALTR + +Y + K Sbjct: 239 GHELEVAMQWNSGYNQSVYTFANTINTHEGGTHEEGFRSALTRVVNAYAKDKKLLKDKDG 298 Query: 316 SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEA 375 S+ GDD REG +++S+K+ +P+F QTK KL ++EV+S V++ + L+ W E +P EA Sbjct: 299 SLTGDDVREGLAAIVSVKVSEPQFEGQTKTKLGNTEVKSFVQTNAFEWLTDWFERNPTEA 358 Query: 376 KIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 K IV K + ++ R AARRA++L RRK +DI LPGKL DC P + EL++VEGDSA Sbjct: 359 KTIVNKAVSSAQARVAARRAKELVRRKSAMDIGGLPGKLKDCQSNQPDECELYIVEGDSA 418 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAK+GR QAILP+RGKI+NVE+AR DK+L + E+ ++ITALGTGI D FD++KL Sbjct: 419 GGSAKEGRESRFQAILPIRGKIINVEKARIDKVLKNNEVQSIITALGTGI-HDEFDLSKL 477 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSL-QYVK 554 RYHKI++M DADVDG HI+TLL+T FR M LI +G +++ +PPLY I +S +Y Sbjct: 478 RYHKIVLMADADVDGKHIQTLLMTLLFRFMRPLIEHGHVFLARPPLYKIKWPRSEPEYAY 537 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISK 584 ++ + L + + + D Sbjct: 538 SDKERDALLEAGASAGKKLPKEDGIQRYKG 567 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 47/89 (52%), Positives = 63/89 (70%), Gaps = 8/89 (8%) Query: 721 SLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 +LL+ S G+K G +QRYKGLGEMNA +LWETT++P TR L++V + DA+ AD+ Sbjct: 544 ALLEAGASAGKKLPKEDG--IQRYKGLGEMNADELWETTMDPATRLLMQVTLDDAATADE 601 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 LFS LMG++VE RR FI N+ + LDI Sbjct: 602 LFSVLMGEDVEARRSFITRNAKDAGLLDI 630 >gi|320009755|gb|ADW04605.1| DNA gyrase, B subunit [Streptomyces flavogriseus ATCC 33331] Length = 689 Score = 532 bits (1370), Expect = e-148, Method: Composition-based stats. Identities = 281/661 (42%), Positives = 386/661 (58%), Gaps = 25/661 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE++ G+AD I V Sbjct: 30 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEAMAGHADTIDV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 89 TIFADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ PL A +TGT VTF D+F D Sbjct: 149 VVNALSTRVSVEVKTDGYRWTQDYKLGVPTAPLAR-HEATEETGTSVTFWADGDVFETTD 207 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR-------------------SPEPREITMFYKG 227 ++++TL R +E++FLN + + L D+R R +T Y+ Sbjct: 208 YSFETLSRRFQEMAFLNKGLTLKLTDEREEAKATAGADSAEVVDVPDEESTRTVTYHYEN 267 Query: 228 GIEAFVSY-LDRHKKPLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKD 284 GI FV Y R + + QS I I+ + +S ++AM+WN Y E V F N I + Sbjct: 268 GIVDFVKYLNSRKGELIHQSVIDIEAEDKDRLLSAEIAMQWNTQYTEGVYSFANAIHTHE 327 Query: 285 GGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTK 344 GGTH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK Sbjct: 328 GGTHEEGFRAALTSLVNRYARDKKLLREKDDNLTGEDVREGLTAIISVKLGEPQFEGQTK 387 Query: 345 EKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV 404 KL ++E ++ V+ V++ L+ W + +P EA I++K + AS R AAR+ARDLTRRKG+ Sbjct: 388 TKLGNTEAKTFVQKVVHEQLTDWFDRNPNEAADIIRKGIAASTARVAARKARDLTRRKGL 447 Query: 405 LDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERAR 464 L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ QAILP+RGKILNVE+AR Sbjct: 448 LESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPMYQAILPIRGKILNVEKAR 507 Query: 465 FDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQ 524 DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR Sbjct: 508 IDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLFRF 566 Query: 525 MPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 567 MRPLVEQGNVYLSRPPLYKIKWGRDDFEYAYSDRERDALVALGKQNGKRIKEDSIQRFKG 626 Query: 585 NDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNF 644 N + + + QA D E S + A + F Sbjct: 627 LGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDVRF 686 Query: 645 I 645 + Sbjct: 687 L 687 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + ++G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 603 DALVALGKQNGKRIKEDSIQRFKGLGEMNAEELRVTTMDVDHRVLGQVTLDDAAQADDLF 662 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 663 SVLMGEDVEARRSFIQRNAKDVRFLDI 689 >gi|297162918|gb|ADI12630.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1] Length = 677 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 274/642 (42%), Positives = 391/642 (60%), Gaps = 22/642 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT Sbjct: 24 ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG V DNGRGIP +H E A EV++T LHAGGKF Y VSGGLHGVG+SV Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ L I +G + + +G PL A TGT +TF DIF ++ Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATPRTGTSLTFWADGDIFETTEY 201 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233 +++TL R +E++FLN + ++L D+R P + ++ Y GGI FV Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSAHATAAADEADSDPAAKTVSYRYDGGITDFV 261 Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +Y R +P+ S I I +S+++A++WN Y ++V + N I +GGTH Sbjct: 262 AYLNARKGEPVHPSVITIAAEDTERLLSVEVALQWNGQYTDSVYSYANAIHTHEGGTHEE 321 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G R+ALT + Y + ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++ Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDIREGLTAIISVKLGEPQFEGQTKTKLGNT 381 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 E R+ V+ V++ L+ W + +P EA +V+K + A+ R AAR+ARDLTRRKG+L+ A+L Sbjct: 382 EARTFVQKVVHEHLTGWFDRNPNEAADVVRKAIQAATARVAARKARDLTRRKGLLETAAL 441 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L Sbjct: 442 PGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 +QEI +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR M LI Sbjct: 502 NQEIQAIISAFGTGVHED-FDIARLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLIE 560 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNF 590 G +Y+ +PPLY I + + + L+ + + DS L Sbjct: 561 EGHVYLSRPPLYKIKWSRDHVEYAYSDRERNMLLERGRQDGRRSKDDSIQRFKG--LGEM 618 Query: 591 IDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L++ + D T + AV +F+ +++ Sbjct: 619 NAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSVLMGEDVEA 660 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 722 LLDTIFSIGRKGI--SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSR 779 LL+ GR+ S+QR+KGLGEMNA +L TT++PD R L +V + DA+ ADDLFS Sbjct: 593 LLERGRQDGRRSKDDSIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAVADDLFSV 652 Query: 780 LMGDEVEPRREFIQENSLPSA-LDI 803 LMG++VE RR FIQ N+ LDI Sbjct: 653 LMGEDVEARRHFIQRNAKDVRFLDI 677 >gi|291438512|ref|ZP_06577902.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672] gi|291341407|gb|EFE68363.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672] Length = 679 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 286/649 (44%), Positives = 398/649 (61%), Gaps = 24/649 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D+ +SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYAD Sbjct: 19 DSEATASYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGYAD 77 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHG Sbjct: 78 TIDVTILDDGGIRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHG 137 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VGVSVVNALS+ + + +K +G + + G+ PL A +TGT VTF DIF Sbjct: 138 VGVSVVNALSTRVAVEVKTDGYRWTQDYKLGVPTAPLAK-HEATEETGTSVTFWADPDIF 196 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYK 226 D++++TL R +E++FLN ++I+L D+R E + ++ Y+ Sbjct: 197 ETTDYSFETLSRRFQEMAFLNKGLRINLTDERESAKATAGADEAGEDEKYEVKAVSYHYE 256 Query: 227 GGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQK 283 GGI FV Y R P+ + I ++ ++S+++AM+WN GY E V F N I Sbjct: 257 GGIVDFVKYLNSRKGDPVHPTVIDLEAEDKDRHLSLEVAMQWNGGYTEGVYSFANIIHTH 316 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 +GGTH G R+ALT I Y + ++ GDD REG T+++S+K+ +P+F QT Sbjct: 317 EGGTHEEGFRAALTSLINKYARDKKLLRDKDDNLTGDDIREGLTAIISVKLSEPQFEGQT 376 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K KL ++EV++ V+ V + L+ WL+ +P EA IV+K + A+ R AAR+ARDLTRRKG Sbjct: 377 KTKLGNTEVKTFVQKVVYEHLNDWLDRNPNEAADIVRKGIAAATARVAARKARDLTRRKG 436 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 +L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ E QAILP+RGKILNVE+A Sbjct: 437 LLETASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPEYQAILPIRGKILNVEKA 496 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R D++L +QEI +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR Sbjct: 497 RIDRILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFR 555 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVIS 583 M L+ G +++ +PPLY I GK + D LI + DS Sbjct: 556 FMRPLVEAGHVFLSRPPLYKIKWGKDDFEYAYSDRERDALIEMGRQAGKRIREDSVQRFK 615 Query: 584 KNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 L + L++ + ++ T + A +F+ +++ Sbjct: 616 G--LGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEA 662 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 593 DALIEMGRQAGKRIREDSVQRFKGLGEMNAEELRVTTMDQEHRVLGQVTLDDAAQADDLF 652 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR+FIQ N+ LDI Sbjct: 653 SVLMGEDVEARRQFIQRNAKDVRFLDI 679 >gi|19909763|dbj|BAB87077.1| DNA gyrase subunit B [Rhodomicrobium vannielii] Length = 469 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 311/469 (66%), Positives = 382/469 (81%) Query: 34 DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93 DTD SGLHHM+YEV+DNAIDE+L GYAD ++VTLN DGS TV DNGRGIPT++H +EG+ Sbjct: 1 DTDDGSGLHHMVYEVVDNAIDEALGGYADYVSVTLNADGSVTVEDNGRGIPTEIHPQEGV 60 Query: 94 SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153 SAAEVIMT+LHAGGKF+Q SYKVSGGLHGVGVSVVNALS+ L+L I R G+ + M+F +G Sbjct: 61 SAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSTRLELTIWRGGHEHFMAFADG 120 Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 + PL + G+A + GT VTF+PS+ F++ DF+Y TL+ RLREL+FLNS V I L D Sbjct: 121 VPVEPLKIVGAAPDRRGTRVTFMPSAATFTMVDFDYATLEFRLRELAFLNSGVYIRLTDL 180 Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENV 273 R EP + Y+GG++AFV YLDR + PL P+ ++ RD ++++ A+ WNDGYHENV Sbjct: 181 RGVEPVKSEFKYEGGLKAFVEYLDRARTPLFPVPVFVRSERDGVAVEAALWWNDGYHENV 240 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 LCFTNNIPQ+DGGTHL+G R+ALTR I +Y + +KK+K + GDD REG T VLS+K Sbjct: 241 LCFTNNIPQRDGGTHLAGFRAALTRTINTYAASTGVAKKEKVQLTGDDAREGLTCVLSVK 300 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 + DP+FSSQTK+KLVSSEVR VES + + L W EEHP+E K+I+ KV +A+ R+AAR Sbjct: 301 VADPKFSSQTKDKLVSSEVRPAVESTMTETLGTWFEEHPVEGKLILLKVAEAAAAREAAR 360 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR+LTRRKGVLD+A+LPGKLADC ERDP KSE+FLVEGDSAGGSAKQGR R NQA+LPL Sbjct: 361 KARELTRRKGVLDVANLPGKLADCQERDPSKSEVFLVEGDSAGGSAKQGRDRSNQAVLPL 420 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 RGKILNVERARFDKMLSSQEIGTLITALGTGIG+D FD++KLRYH+III Sbjct: 421 RGKILNVERARFDKMLSSQEIGTLITALGTGIGRDDFDLSKLRYHRIII 469 >gi|313884999|ref|ZP_07818751.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619690|gb|EFR31127.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 691 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 253/665 (38%), Positives = 382/665 (57%), Gaps = 18/665 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 N N++YD SIQIL+GLDAV+KRP MYIG TD GLHH++YE++DN++DE+L GY D Sbjct: 3 NKTNANYDDQSIQILEGLDAVRKRPGMYIGSTD-HRGLHHLVYEIVDNSVDEALSGYCDA 61 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I V L DGS V+DNGRG+P +H G+ +VI T LHAGGKF Q YK +GGLHGV Sbjct: 62 IKVELLKDGSIRVTDNGRGMPVGMHAS-GVPTIQVIFTVLHAGGKFGQGGYKSAGGLHGV 120 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVT-GSAGNDTGTEVTFLPSSDI 181 G SVVNALSSWL +++KR+G YEM+F + G + N++GT+V F+P + I Sbjct: 121 GASVVNALSSWLTVQVKRDGYTYEMNFKDGGHPEGKFKKIPNKQKNESGTQVHFMPDAKI 180 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 F Y+T+ RLRE +FL + I + D+RS + T Y+ G++ F+ +K Sbjct: 181 FGANSIKYETILERLRESAFLLKGLTIEITDERSDKE--ETFHYEEGLKDFIK-YLNEEK 237 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 G+ D+ I+ A ++NDGY E ++ F NN+ GGTH +G ++ LT+ Sbjct: 238 HTFSDTAYASGTVDDFEIEFAFQYNDGYSETIMSFANNVRTSMGGTHETGFKTGLTKAFN 297 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESF 359 Y ++ K+ +++ G D REG +VLSI++P+ +F QTKEKL + + RS+V++F Sbjct: 298 DYGRRTGIIKEKDKNLDGSDIREGIAAVLSIRVPEAYLQFEGQTKEKLGTPKARSLVDNF 357 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR--KGVLDIASLPGKLADC 417 V + ++ +L E+ +A+ +++K + A R+AAR+ARD +R K + GKL Sbjct: 358 VTEAVTLFLNENGPQAQELLRKAVKARNTREAARKARDASRSGAKRSQQERLISGKLTKA 417 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 +D K +EL+LVEGDSAGGSAK GR+ QAILPLRGK++N E+A ++ ++EI T+ Sbjct: 418 QSKDAKMNELYLVEGDSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIMKNEEINTM 477 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 I +G G+G D F+I + Y K+IIMTDAD DGAHI+ LLLTFF+R M L+ G +Y+ Sbjct: 478 IYTIGAGVGAD-FNIEDINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLA 536 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PPLY I++G ++ +Y + ++ + ++ Sbjct: 537 MPPLYKISKGS------GKKEKIEYAWTNEELKVATQKIGKGYILQRYKGLGEMNADQLW 590 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI 657 D + + +E A +S + + + F ++ + + S Sbjct: 591 DTTMNPDTRLLIRVTVEDAALSERRLTTLMGAKVEPRRKWIEDNVKFTLDEEDTLLNDSS 650 Query: 658 NNSDI 662 + Sbjct: 651 KGPGL 655 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 100/267 (37%), Gaps = 13/267 (4%) Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 + L + ++ + + + +E + SK+ N + Sbjct: 373 AQELLRKAVKARNTREAARKARDASRSGAKRSQQERLISGKLTKAQSKDAKMNELYLVEG 432 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGS 656 + + + V N E ++ ++ + I ++ Sbjct: 433 DSAGGSAKLGRNPRYQAILPLRGKVINTEKASITDIMKNEEINTMIYTIGAGVGADFNIE 492 Query: 657 INNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIK 715 N D ++ + F + + + ++ + + G K K Sbjct: 493 DINYDKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLAMPPLYKISKGSGKKEK 552 Query: 716 ITGPCSLLDTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 I + KG +QRYKGLGEMNA QLW+TT+NPDTR L+RV + Sbjct: 553 IE-----YAWTNEELKVATQKIGKGYILQRYKGLGEMNADQLWDTTMNPDTRLLIRVTVE 607 Query: 769 DASQADDLFSRLMGDEVEPRREFIQEN 795 DA+ ++ + LMG +VEPRR++I++N Sbjct: 608 DAALSERRLTTLMGAKVEPRRKWIEDN 634 >gi|311112567|ref|YP_003983789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] gi|310944061|gb|ADP40355.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia dentocariosa ATCC 17931] Length = 676 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 267/617 (43%), Positives = 369/617 (59%), Gaps = 37/617 (5%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ Q Y A I +L+GL+AV+KRP MYIG T E GLHH++YEV+DN++DE+L GY Sbjct: 1 MTSE-QPHEYGASDITVLEGLEAVRKRPGMYIGST-TERGLHHLVYEVVDNSVDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I VT+ DG V D+GRGIP D H E S EV+MT LHAGGKF Y VSGGL Sbjct: 59 ASHIEVTIQADGGVRVQDDGRGIPVDEHPTEHKSTVEVVMTVLHAGGKFGGGGYAVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG+SVVNALS + + R+G + +SF N GI D PL G TGT TF P Sbjct: 119 HGVGISVVNALSKKVITEVHRQGYSWHISFANGGIPDGPLRR-GKVSQKTGTIQTFYPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------------------------ 215 +IF +F+++TL+ R ++++FLN + ISL D+R Sbjct: 178 EIFETVEFDFETLRARFQQMAFLNKGLTISLTDERDQFEGGDEVAEEEDEKDKVLPLNRV 237 Query: 216 ----PEPREITMFYKGGIEAFVSY-LDRHKKPLMQSPIRIQGSR--DNISIDLAMRWNDG 268 R +T Y G+ +V + K + + I + ++++++AM+W Sbjct: 238 GANAEGHRTVTYRYDNGLFDYVHFLNAGSKTVINEDIIYFEAEDTVRHMALEVAMQWTGS 297 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y E+V + N I +GGTH G R+ALT + Y ++ + ++ G+D REG T+ Sbjct: 298 YKESVHSYANTINTHEGGTHEEGFRAALTSLVNRYARENKLLRDKDDNLTGEDVREGLTA 357 Query: 329 VLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMV 388 V+SIK+ +P+F QTK KL +SE +S + +ND ++ W + +P AK +V++ + A+ Sbjct: 358 VISIKISEPQFEGQTKTKLGNSEAKSFTQREINDHMADWFDRNPAVAKDVVRRAITAAQA 417 Query: 389 RDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQ 448 R AAR+AR+ TRRKG+L+ +S+PGKL DC+ +DP SE++LVEGDSAGGSA QGR +Q Sbjct: 418 RMAARKARETTRRKGLLETSSMPGKLKDCASKDPSISEIYLVEGDSAGGSAVQGRDPNSQ 477 Query: 449 AILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADV 508 AILPLRGKILNVERAR D+ LS+ EI +ITA GTGIG D FD+ K RYHKI++M DADV Sbjct: 478 AILPLRGKILNVERARLDRALSNAEIQAMITAFGTGIG-DDFDLEKARYHKIVLMADADV 536 Query: 509 DGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQS 567 DG HI TLLLT FR M LI G++Y+ +PPLY I + YV + ++ L Sbjct: 537 DGQHITTLLLTLLFRFMRPLIEAGYVYLAQPPLYRIKWSNAPHDYVFSDAERDEALARGQ 596 Query: 568 LSEEIELFCDSKGVISK 584 + + Sbjct: 597 AKNQRLPKDNGIQRYKG 613 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 1/69 (1%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEM+ ++LW+TT++P R+LL+VK+ DA+ AD +FS LMG++VE RR+FIQ+N Sbjct: 608 IQRYKGLGEMDYTELWDTTMDPQRRTLLQVKMEDAAAADQIFSVLMGEDVEARRDFIQQN 667 Query: 796 SLPSA-LDI 803 + LDI Sbjct: 668 AKDIRFLDI 676 >gi|48478486|ref|YP_024192.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790] gi|48431134|gb|AAT43999.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790] Length = 646 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 259/635 (40%), Positives = 371/635 (58%), Gaps = 38/635 (5%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 Y+A IQIL+GL AV++ P MYIG+T E GLHHM+YEV+DN+IDES+ G+ I + Sbjct: 2 DEYNASQIQILEGLKAVRQTPGMYIGNTS-EEGLHHMVYEVIDNSIDESMAGFCSNIYII 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS +V D+GRGIP D+H + E+++T LH+G KF++ YKV+GGLHGVGV V Sbjct: 61 IYKDGSISVEDDGRGIPVDMHPKYKRPGLEIVLTELHSGAKFDKNVYKVTGGLHGVGVHV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--------TGSAGN---DTGTEVTFL 176 VNALS +L+ +K+ +Y F G+ + + GT + F Sbjct: 121 VNALSDYLEAIVKKNDKLYIEKFERGLPVTKMEELDYIMASTIKDVKIKLANHGTIIKFH 180 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236 P IF V+DF+Y+ + R R+L+FLN V I++ D+R+ + GG+ FV Y+ Sbjct: 181 PDPQIFDVRDFSYEIIAGRCRQLAFLNPQVTITVEDERTSKKETYHF--TGGLSEFVKYI 238 Query: 237 DRHKKPLMQSPIRIQG--------SRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 +K P+ + PI S++ A + + V F NNI GTH Sbjct: 239 SSNKDPVYKDPIYYSTEIEKEVHNEIRKYSLEFAFLYVTDSSKIVESFANNIRTIYDGTH 298 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 ++G + L+R I Y++ K ++ GDD R+G + + +K+ P+F QTKEKL Sbjct: 299 VTGFYTGLSRAIIDYIKSKN---LSKLNITGDDTRDGLIAAIHVKLMRPQFEGQTKEKLG 355 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL-DI 407 +SE++S+V S L ++ E +P+ A I K+V+ ++ +R+A+R ++L +RK L Sbjct: 356 NSEIKSIVASATEMYLKSYFESYPVTADAIAKRVILSAEIREASRSQKELIKRKSALSSG 415 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 +SLPGKLADCS DP K+EL++VEGDSAGGSAKQ R+RE QAILPLRGKILNVE+A +K Sbjct: 416 SSLPGKLADCSSDDPAKTELYIVEGDSAGGSAKQARNREFQAILPLRGKILNVEKAGDNK 475 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L ++EI LITA+G+GI +++FD KLRY KIIIMTDADVDGAHIRTLLLTFF+R M Sbjct: 476 VLVNEEIKNLITAIGSGI-KENFDEKKLRYDKIIIMTDADVDGAHIRTLLLTFFYRFMRP 534 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 LI G +Y +PPLY I +G + YV ++ + L L G ++ L Sbjct: 535 LIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLLKK--LGNATIQRFKGLGEMNPEQL 592 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 D + IE A+ + Sbjct: 593 W---------DTTMNPEKRRIVMVTIEDAMYADEL 618 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + V + ++ N + I ++++ D ++ V + + Sbjct: 465 ILNVEKAGDNKVLVNEEIKNLITAIGSGIKENFDEKKLRYDKIIIMTDADVDGAHI--RT 522 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSL-ICNGDKIKITGPCSLLDTIFSIGRK--GISMQ 737 + +F ++ R + I G I D + +K ++Q Sbjct: 523 LLLTFFYRFMRPLIELGHVYFAEPPLYRIQKGTDINYVYTDDEKDRLL---KKLGNATIQ 579 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEMN QLW+TT+NP+ R ++ V I DA AD+LF+ LMG++VEPRR+FI+EN+ Sbjct: 580 RFKGLGEMNPEQLWDTTMNPEKRRIVMVTIEDAMYADELFNILMGEKVEPRRKFIEENAK 639 Query: 798 PS-ALDI 803 LDI Sbjct: 640 FVKNLDI 646 >gi|317054739|ref|YP_004103206.1| DNA gyrase subunit B [Ruminococcus albus 7] gi|315447008|gb|ADU20572.1| DNA gyrase, B subunit [Ruminococcus albus 7] Length = 662 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 271/592 (45%), Positives = 379/592 (64%), Gaps = 11/592 (1%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 ++++YD + I++L+GL+ V+ RP MYIG T G GLHH++YE++DNAIDE+L GY I Sbjct: 22 KSNNYDENQIEVLEGLEPVRVRPGMYIGST-GPKGLHHLVYEIVDNAIDEALAGYCTEII 80 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG-LHGVG 124 V + V DNGRGIPT +H +EGISAA V+ T LHAGGKF G LHGVG Sbjct: 81 VDILPGDVIRVVDNGRGIPTGIHPKEGISAATVVYTVLHAGGKFGGGGGYKVAGGLHGVG 140 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALS +L+L + N++ F G PL + G + TGTEV F P +IF Sbjct: 141 ASVVNALSEYLELTVYDGKNVHFQRFDRGHYSEPLKIIGET-DKTGTEVKFKPDPEIFQE 199 Query: 185 QD-FNYDTLQHRLRELSFLNSSVQISLID-KRSPEPREITMFYKGGIEAFVSYLD--RHK 240 F+Y+ L RLRE +FLN+ ++I D + + +P + Y+GGI FV ++ R Sbjct: 200 TTTFDYEILLKRLREQAFLNAGIKIVFSDLRNAEKPISEVLHYEGGIRQFVEHIHKTRGV 259 Query: 241 KPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 +PL + I I G D++ ++A+++ND Y+E +L F NNI DGG+H +SALT+ + Sbjct: 260 EPLSEDVIYINGVEDDMFAEIALQYNDTYNEIILSFANNIHTPDGGSHEMAFKSALTKIL 319 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 Y + K + +++G+DCREG T+++S+K+ + F QTK +L + EVR V+ + Sbjct: 320 NDYGKAHNLIKDNDDALMGEDCREGLTAIVSVKLTNCEFEGQTKGRLGNPEVRPFVDKML 379 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSER 420 + L +LEE+P AK I K + A R+AA+RAR+LTRRK VL+ ASLPGKLADCSER Sbjct: 380 KEKLRNYLEENPAVAKAIFDKSIQAQKAREAAKRARELTRRKSVLESASLPGKLADCSER 439 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 D +E+++VEGDSAGGSAK+GR R QAILPL GK+LNVE+AR DK+ ++++ ++TA Sbjct: 440 DMSMTEIYIVEGDSAGGSAKEGRDRRYQAILPLWGKMLNVEKARIDKVYGNEKLMPVVTA 499 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 LGT IG D FDI+KLRY K+IIM DADVDG+HIRTLLLTFFFR M LI ++I +PP Sbjct: 500 LGTSIG-DDFDISKLRYGKVIIMADADVDGSHIRTLLLTFFFRFMRPLIEEEHVFIAQPP 558 Query: 541 LYGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN 589 L+ + R K ++Y +E + Y+ S + G + L Sbjct: 559 LFKVERNKKVRYAFTDEERDKYIDELSDGGKLKVAVQRYKGLGEMDPEQLWE 610 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 38/82 (46%), Positives = 63/82 (76%), Gaps = 1/82 (1%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 +D + G+ +++QRYKGLGEM+ QLWETT++P+ R++++V + DA +AD++F+ LMG Sbjct: 581 IDELSDGGKLKVAVQRYKGLGEMDPEQLWETTMDPERRTMIKVTMEDAVKADEIFTILMG 640 Query: 783 DEVEPRREFIQENSLPS-ALDI 803 D+V PR+EFI++N+ LD+ Sbjct: 641 DKVGPRKEFIEKNAEYVKDLDV 662 >gi|255975795|ref|ZP_05426381.1| gram positive topoisomerase IV [Enterococcus faecalis T2] gi|255968667|gb|EET99289.1| gram positive topoisomerase IV [Enterococcus faecalis T2] Length = 666 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 260/644 (40%), Positives = 372/644 (57%), Gaps = 15/644 (2%) Query: 21 LDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNG 80 ++AV+KRP MYIG TD GLHH++YE++DNA+DE+L GY + I VT+ D S V+D+G Sbjct: 1 MEAVRKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSG 59 Query: 81 RGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK 140 RG+PT +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL++ I Sbjct: 60 RGMPTGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIV 118 Query: 141 REGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLREL 199 R+G Y F + G L G GT VTFLP IFS +F+Y+ L RLRE Sbjct: 119 RDGVEYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRES 178 Query: 200 SFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI 259 +FL V+I+L D R E +E Y+ GI+ FV+YL+ K L + G+++ I + Sbjct: 179 AFLLKGVKITLTDGRGEELKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEV 237 Query: 260 DLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIG 319 +LA ++NDGY ENVL F NN+ KDGGTH G+++++T+ Y K K+ +++ G Sbjct: 238 ELAYQYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEG 297 Query: 320 DDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKI 377 D REG +VLSI++P+ +F QTK KL + R+VV++ V + + +L+E+ ++ Sbjct: 298 SDFREGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQS 357 Query: 378 IVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 +++K + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEGDSA Sbjct: 358 LIRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSA 417 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAKQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Sbjct: 418 GGSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDC 476 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKD 555 Y KIIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G + V Sbjct: 477 NYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI- 535 Query: 556 EESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQ 615 +Y E+ ++ + ++ + + + I+ Sbjct: 536 -----EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDD 590 Query: 616 AVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 A + + + + F E+ S + Sbjct: 591 AAQAERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 634 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 359 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 418 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 419 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 478 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 479 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 538 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 539 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 598 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 599 TTLMGDKVEPRRKWIEQH 616 >gi|28569044|gb|AAO47225.1|AF205853_1 DNA gyrase subunit B [Streptomyces rishiriensis] Length = 677 Score = 531 bits (1369), Expect = e-148, Method: Composition-based stats. Identities = 274/643 (42%), Positives = 390/643 (60%), Gaps = 22/643 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I V Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDV 81 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP +H E A EV++T LHAGGKF Y VSGGLHGVG+S Sbjct: 82 TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLS 141 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L I +G+ + + +G PL A + TGT +TF DIF + Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTE 200 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--------------SPEPREITMFYKGGIEAF 232 ++++TL R +E++FLN + ++L D+R P + ++ Y GGI F Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 233 VSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 V + R +P S I I +S ++A++WN Y ++V + N I +GGTH Sbjct: 261 VVHLNARKAEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G R+ALT + Y + + ++ G+D REG T+++S+K+ +P+F QTK KL + Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVKLGEPQFEGQTKTKLGN 380 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 +EVR+ V+ V++ L+ W + +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ A+ Sbjct: 381 TEVRTFVQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M L+ Sbjct: 501 QNQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +++ +PPLY I + + + L+ + + + DS L Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKG--LGE 617 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L++ + D T + A +F+ +++ Sbjct: 618 MNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEA 660 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QR+KGLGEMNA +L TT++PD R L +V + DA+ ADDLFS LMG++VE RR FIQ Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667 Query: 795 NSLPSA-LDI 803 N+ LDI Sbjct: 668 NAQDVRFLDI 677 >gi|28569047|gb|AAO47227.1|AF205854_1 DNA gyrase subunit B [Streptomyces caeruleus] Length = 677 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 270/598 (45%), Positives = 374/598 (62%), Gaps = 20/598 (3%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + +SYDAD+I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD Sbjct: 20 QVGTASYDADAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADR 78 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGV 123 I VT+ DG V DNGRGIP +H E A EV++T LHAGGKF Y VSGGLHGV Sbjct: 79 IDVTVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYTVSGGLHGV 138 Query: 124 GVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 G+SVVNALS+ L I +G+ + + +G PL V A + TGT +TF IF Sbjct: 139 GLSVVNALSARLSAEIWTDGHRWTQDYRDGAPTAPL-VRREATSRTGTSLTFWADGSIFE 197 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE--------------ITMFYKGGI 229 D++++TL R +E++FLN + ++L D+R+ ++ Y GGI Sbjct: 198 TTDYSFETLARRFQEMAFLNRGLTLTLTDERASARATAATDEVHPDPAAKTVSYRYDGGI 257 Query: 230 EAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGG 286 FV+Y R +P+ S + I +S ++A++WN Y ++V + N I +GG Sbjct: 258 TDFVAYLNSRKGEPVHPSVVTIAADDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGG 317 Query: 287 THLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEK 346 TH G R+ALT + Y ++ ++ G+D REG T+++S+K+ +P+F QTK K Sbjct: 318 THEEGFRTALTTVVNRYARDKKLLREKDANLAGEDIREGLTAIISVKLREPQFEGQTKTK 377 Query: 347 LVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLD 406 L ++EVR+ V+ V++ L+ W + +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 378 LGNTEVRTFVQKVVHEHLTDWFDRNPNEAADIVRKAVQAATARVAARKARDLTRRKGLLE 437 Query: 407 IASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFD 466 ASLPGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D Sbjct: 438 TASLPGKLSDCQSNDPAMSEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARID 497 Query: 467 KMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMP 526 ++L +QEI LI+A GTG+ +D FDI KLRYHK+I+M DADVDG HI TLLLT FR M Sbjct: 498 RILQNQEIQALISAFGTGMHED-FDIAKLRYHKVILMADADVDGQHINTLLLTVLFRFMR 556 Query: 527 SLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISK 584 LI G +Y+ +PPLY I + + D L+ + + DS Sbjct: 557 PLIEEGHVYLSRPPLYKIKWSRDHVEYAYSDRERDTLLELGRRDGRRVRDDSIQRFKG 614 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QR+KGLGEMNA +L TT++PD R L RV + DA+ ADDLFS LMG++VE RR FIQ Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGRVALDDAAVADDLFSVLMGEDVEARRHFIQR 667 Query: 795 NSLPSA-LDI 803 N+ LDI Sbjct: 668 NAKDVRFLDI 677 >gi|327542614|gb|EGF29087.1| DNA gyrase subunit B [Rhodopirellula baltica WH47] Length = 637 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 253/644 (39%), Positives = 366/644 (56%), Gaps = 27/644 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + Y+A +I L+GL+ V+KRP MYIG G +GLHH+I+E++DN++DE++ G+ Sbjct: 1 MS--VAPKEYNAKNITALEGLEPVRKRPGMYIGGV-GSAGLHHLIWEIVDNSVDEAMNGH 57 Query: 61 ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A ITVTL+ DG + +VSDNGRGIP D H + SA E+++T LHAGGKF +YK SGG Sbjct: 58 ASEITVTLHKDGETVSVSDNGRGIPVDKHPKTKKSALEMVLTVLHAGGKFEGDNYKTSGG 117 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L +KR+G Y M+F G + L TGT +TF P Sbjct: 118 LHGVGASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTVRGTGTSITFTPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN DT++ RL SFL+ V+++ ID+ + T ++ GI ++ + + Sbjct: 178 TIFPRTTFNGDTIKQRLETASFLHRGVKVTYIDEVAKTR--DTFLHENGIVDYLGKVIKE 235 Query: 240 KKPL-MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ + D +++ ++W + E+V + N IP GGTH +G R + + Sbjct: 236 REARTIHEAPFTYRVDDEDRVEVTLQWTESTDEHVRSYVNGIPTGSGGTHENGFRGGVVK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + ++V+ + +D REG +++SI + +P+F QTK++L + E +VES Sbjct: 296 AVRNHVDTH-SLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + WL +P A ++ +++ A+ R A+R A + RKG LPGKL+DC Sbjct: 355 GVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDCV 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 KSELF+VEGDSAGGSAKQGR R QAILPLRGK+LN E A K+L ++EI +I Sbjct: 415 SGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDMI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +LG GIG ++ LRY +II++ DAD DG HI TLLLTFF+R MP+LI +G L+I Sbjct: 475 ASLGCGIGPSL-NLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISK------------ 584 PPLY I GK + DEE E L + + EI F ++ K Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKR 593 Query: 585 NDLRNFIDDALKIDKLIKDFYPN----HDKTFIEQAVISGVFNC 624 L+ IDD L+ D+ I D + +E+A + + Sbjct: 594 TLLKVEIDDHLETDRTISDLMGRDASARFRFIMERAEDASEIDV 637 Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 724 DTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + I + GR + R+KGLGEM LW TTL+P R+LL+V+I D + D S LM Sbjct: 555 ERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKRTLLKVEIDDHLETDRTISDLM 614 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G + R FI E + + +D+ Sbjct: 615 GRDASARFRFIMERAEDASEIDV 637 >gi|209885135|ref|YP_002288993.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5] gi|209873331|gb|ACI93127.1| DNA topoisomerase IV, B subunit [Oligotropha carboxidovorans OM5] Length = 689 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 249/658 (37%), Positives = 358/658 (54%), Gaps = 26/658 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 Y A I++L+GL+ V++RP MYIG TD E LHH+ EV+DN++DE+L G+A Sbjct: 39 TTSAEGGYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHAS 97 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I V+L DG TV DNGRGIP D H + + SA E+IM LHAGGKF+ K Y+ SGGLH Sbjct: 98 FIEVSLGADGYLTVVDNGRGIPVDPHPKFKNKSALEIIMCTLHAGGKFDSKVYETSGGLH 157 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALSS L + + R +Y M+F G L G N GT V F P ++I Sbjct: 158 GVGVSVVNALSSELIVEVARNQKLYRMTFERGKPKGKLEELGKVHNRRGTSVRFKPDTEI 217 Query: 182 F-SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS------PEPREITMFYKGGIEAFVS 234 F + F L R ++L V+I P E T + GG++ +++ Sbjct: 218 FGNKAVFKPQRLFQMARSKAYLFGGVEIRWRCAPELLKGLDSVPAEDTFHFPGGLKDYLA 277 Query: 235 YLDRHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGL 292 + + R+ + + + A+ W + +TN +P DGGTH +G+ Sbjct: 278 AAVHADTLVHPDIFAGKTGRNGAHGACEWAVAWTADADGFMSSYTNTVPTPDGGTHETGM 337 Query: 293 RSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEV 352 RSAL R I + E++ K S+ +D G +LS+ + +P F QTK++L ++E Sbjct: 338 RSALLRGIRDHAERTGQ-GKKASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEA 396 Query: 353 RSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPG 412 + +VE V D WL +P +A +++ +++ + R R ++ RK + LPG Sbjct: 397 QRIVEQAVKDPFDHWLSGNPTQANKLLEFIIERADERLRRRAEKE-ISRKTAVKKLRLPG 455 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADC+ + SELF+VEGDSAGGSAKQ R R+ QAILPLRGKILNV A DKM ++ Sbjct: 456 KLADCTNTAAEGSELFIVEGDSAGGSAKQARDRKTQAILPLRGKILNVASATRDKMAANA 515 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 ++ LI A+G G G + + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI NG Sbjct: 516 QLSDLIQAIGAGTGAN-YREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDNG 574 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 LY+ PPLY +T G Y +DE ++ L + + KG+ + N + Sbjct: 575 HLYLAVPPLYRLTHGSKTLYARDEAHRDELLKKEFHANAKVEIGRFKGL--GEMMPNQLK 632 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + K + + V++ + + + + SK R FI E++E Sbjct: 633 ETTMAPA----------KRTLLRVVLATEERDSTAKSVERLMGSKAEARFEFITERAE 680 Score = 93.5 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 4/180 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N S ++ ++L++ + I + ++ ++ V + Sbjct: 500 ILNVASATRDKMAANAQLSDLIQAIGAGTGANYREEDLRYSRIIIMTDADVDGAHIASLL 559 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738 F + K I + + + L + + + + + R Sbjct: 560 ITFFYRQMPKLIDNGHLYLAVPPLYRLTHGSKTLYARDEAHRDELLKKEFHANAKVEIGR 619 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796 +KGLGEM +QL ETT+ P R+LLRV + + RLMG + E R EFI E + Sbjct: 620 FKGLGEMMPNQLKETTMAPAKRTLLRVVLATEERDSTAKSVERLMGSKAEARFEFITERA 679 >gi|32472532|ref|NP_865526.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] gi|32443768|emb|CAD73210.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1] Length = 637 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 253/644 (39%), Positives = 366/644 (56%), Gaps = 27/644 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS + Y+A +I L+GL+ V+KRP MYIG G +GLHH+I+E++DN++DE++ G+ Sbjct: 1 MS--VAPKEYNAKNITALEGLEPVRKRPGMYIGGV-GSAGLHHLIWEIVDNSVDEAMNGH 57 Query: 61 ADIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 A ITVTL+ DG + +VSDNGRGIP D H + SA E+++T LHAGGKF +YK SGG Sbjct: 58 ASEITVTLHKDGETVSVSDNGRGIPVDKHPKTKKSALEMVLTVLHAGGKFEGDNYKTSGG 117 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSS 179 LHGVG SVVNALS L +KR+G Y M+F G + L TGT +TF P Sbjct: 118 LHGVGASVVNALSKELVAIVKRDGVQYRMAFSRGQATSKLQKLRGTIRGTGTSITFTPDP 177 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN DT++ RL SFL+ V+++ ID+ + T ++ GI ++ + + Sbjct: 178 TIFPRTTFNGDTIKQRLETASFLHRGVKVTYIDEVAKTR--DTFLHENGIVDYLGKVIKE 235 Query: 240 KKPL-MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 ++ + D +++ ++W + E+V + N IP GGTH +G R + + Sbjct: 236 REARTIHEAPFTYRVDDEDRVEVTLQWTESTDEHVRSYVNGIPTGSGGTHENGFRGGVVK 295 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358 + ++V+ + +D REG +++SI + +P+F QTK++L + E +VES Sbjct: 296 AVRNHVDTH-SLTPRGVKITHEDIREGLIAIVSIFVAEPQFQGQTKDRLNNPEAHGLVES 354 Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418 V + WL +P A ++ +++ A+ R A+R A + RKG LPGKL+DC Sbjct: 355 GVRSAMEQWLNNNPSVADAVIARIVAAARARAASRAASEAVSRKGGSKRTLLPGKLSDCV 414 Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478 KSELF+VEGDSAGGSAKQGR R QAILPLRGK+LN E A K+L ++EI +I Sbjct: 415 SGGKGKSELFIVEGDSAGGSAKQGRDRNCQAILPLRGKVLNTESATLKKILDNKEIQDMI 474 Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538 +LG GIG ++ LRY +II++ DAD DG HI TLLLTFF+R MP+LI +G L+I Sbjct: 475 ASLGCGIGPSL-NLANLRYDRIILLADADSDGHHITTLLLTFFYRHMPALIADGRLFIAV 533 Query: 539 PPLYGITRGKSLQYVKDEESLEDYLINQS--LSEEIELFCDSKGVISK------------ 584 PPLY I GK + DEE E L + + EI F ++ K Sbjct: 534 PPLYRIDIGKETFWAADEEDRERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKR 593 Query: 585 NDLRNFIDDALKIDKLIKDFYPN----HDKTFIEQAVISGVFNC 624 L+ IDD L+ D+ I D + +E+A + + Sbjct: 594 TLLKVEIDDHLETDRTISDLMGRDASARFRFIMERAEDASEIDV 637 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 724 DTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLM 781 + I + GR + R+KGLGEM LW TTL+P R+LL+V+I D + D S LM Sbjct: 555 ERILAEHNGRANPEITRFKGLGEMMPKVLWNTTLDPTKRTLLKVEIDDHLETDRTISDLM 614 Query: 782 GDEVEPRREFIQENSLPS-ALDI 803 G + R FI E + + +D+ Sbjct: 615 GRDASARFRFIMERAEDASEIDV 637 >gi|261338542|ref|ZP_05966426.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093] gi|270276563|gb|EFA22417.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093] Length = 706 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 262/637 (41%), Positives = 369/637 (57%), Gaps = 25/637 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 41 DTLSPDHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 99 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 100 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 159 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G ++ ++I+ PL TGT VTF P + Sbjct: 160 VGISVVNALSTRVDIEVRRQGYVWTQTYIDQHPTAPLKQGRPMRDDESTGTSVTFWPDAQ 219 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMF 224 IF ++++TL+ R ++++FLN ++ISL D R PE + +T Sbjct: 220 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDMREPDLAGDEVAGDEAQDKPEHQSVTYQ 279 Query: 225 YKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNNI 280 Y GI+ +V + R P+ I + +I I ++AM+W Y E+V F N I Sbjct: 280 YLNGIKDYVEFLVKTRKSTPVEPDVIDFEAEDLSIGISAEIAMQWTTAYSESVHTFANTI 339 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT + Y + K ++ GDD REG T+V+S+K+ +P+F Sbjct: 340 STTEGGTHEEGFRTALTSLVNKYAREKNILKDKDDNLSGDDVREGLTAVISVKLTNPQFE 399 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL +SE R+ V +ND LS W + HP E K I++K ++AS R AA++AR+ TR Sbjct: 400 GQTKTKLGNSEARAFVIRVMNDKLSDWADAHPNEMKSIIQKAIEASRARLAAKKARENTR 459 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK + + A +P KL DC DP + ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 460 RKSIFESAGMPDKLKDCQSNDPAECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNT 519 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERA D+M+ S I +LITA+G G G+D F+++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 520 ERASLDRMMKSDTIESLITAVGGGYGED-FNLDKVRYHKVIIMADADVDGAHIATLNLTL 578 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 579 FFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGRAAGRQLPKGEGI 638 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 ++ + QA Sbjct: 639 QRYKGLGEMSYQELWETTMDPEHRILKQVHIEDALQA 675 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + GR KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA QAD+ Sbjct: 619 DRVLAEGRAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDALQADET 678 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ + Sbjct: 679 FSMLMGDEVEPRRLFIQRNAHNA 701 >gi|255513419|gb|EET89685.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 635 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 267/616 (43%), Positives = 395/616 (64%), Gaps = 7/616 (1%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + ++Y A I +L G ++KRP+MYIG T G SG H++YEV+DN++DE++ GY I Sbjct: 1 MDENNYGARDIIVLSGPQGIRKRPAMYIGST-GSSGFIHLLYEVIDNSVDEAMAGYCKNI 59 Query: 65 TVTLNMDGSC---TVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 V L + V+D+GRGIP D+ +EG A EVIMT +HAG KF K+YKVSGGLH Sbjct: 60 LVKLGRENGVDYAEVTDDGRGIPVDIMPKEGKPAVEVIMTSIHAGAKFENKAYKVSGGLH 119 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG++VVNALSS ++ +KR +Y ++F G+L + L G+ GN+TGT + F+P ++I Sbjct: 120 GVGLTVVNALSSHTEVIVKRNSKVYRITFSRGVLTSGLEEIGTCGNETGTTIKFVPDTEI 179 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKK 241 FSV F+ L RLR LSFL+ ++I L+D R E + + GI F++ R K Sbjct: 180 FSVDRFDTIQLTERLRYLSFLSPGLKIKLVDLREDSSEETNFYSENGIVDFIN-YLRGGK 238 Query: 242 PLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQIT 301 + PI I S ++I +D+ +++ DGY+E +L F N I +GGTH++G R ALTR IT Sbjct: 239 SDVSKPIIISKSDNSIKVDIGLQYVDGYNEELLSFVNKIKTPEGGTHVTGFRGALTRAIT 298 Query: 302 SYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 +YV+K+ K ++ G+D REG +V+++ M +P F QTKEKL + ++SVVE+ Sbjct: 299 NYVQKNSKKKTS-VNIEGEDTREGLIAVVAVMMQNPEFEGQTKEKLGNVNIKSVVENIAY 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERD 421 LS + EE+P EA +++KV A+ R+AA+RAR+LTR+K + + A LPGKLADC+E D Sbjct: 358 TALSYYFEENPGEANKVIEKVSRAAEAREAAKRARELTRKKSLFEGAVLPGKLADCTESD 417 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 P K+E+F+VEG+SA GS+KQGR R QAILPLRGKILNVE+A +K+ ++ E+ ++TA Sbjct: 418 PDKAEIFIVEGESAAGSSKQGRDRFYQAILPLRGKILNVEKATDEKIFNNAELHLMVTAF 477 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 GTGI ++ F+I LRY KII++TDADVDG+HI+TLLLTFF+R + LI G++YI +PPL Sbjct: 478 GTGI-KEGFNIENLRYKKIILLTDADVDGSHIKTLLLTFFYRYLRPLIERGYIYIAQPPL 536 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLI 601 Y ++ G+ ++Y + L + + ++ + + + +D +I K I Sbjct: 537 YKVSHGREVKYAYSDSELSALMKENNGKGNVQRYKGLGEMNPEQLWETTMDPQKRIIKRI 596 Query: 602 KDFYPNHDKTFIEQAV 617 + Sbjct: 597 SIKDAQIADAIFNILM 612 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 6/186 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + + ++L + ++ ++ ++ V + + Sbjct: 453 ILNVEKATDEKIFNNAELHLMVTAFGTGIKEGFNIENLRYKKIILLTDADVDGSHI--KT 510 Query: 681 SIFSFGSKYKRIFSNRIE-ENYLTILSLICNGDKIKITGPCSLLDTIFSIGR-KGISMQR 738 + +F +Y R R L + +G ++K S L + KG ++QR Sbjct: 511 LLLTFFYRYLRPLIERGYIYIAQPPLYKVSHGREVKYAYSDSELSALMKENNGKG-NVQR 569 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP 798 YKGLGEMN QLWETT++P R + R+ I DA AD +F+ LMG +V PRR+F++E+S Sbjct: 570 YKGLGEMNPEQLWETTMDPQKRIIKRISIKDAQIADAIFNILMGMDVVPRRKFLEEHSTE 629 Query: 799 SA-LDI 803 + LD+ Sbjct: 630 VSFLDV 635 >gi|171920906|ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524343|ref|ZP_03004375.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273777|ref|ZP_03206311.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554526|ref|YP_002284909.1| DNA topoisomerase IV subunit B [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903123|gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195659753|gb|EDX53133.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249532|gb|EDY74314.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542027|gb|ACI60256.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 642 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 240/593 (40%), Positives = 365/593 (61%), Gaps = 15/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD +I+IL+GL+AV+KRP MYIG T GLHH+++E++DN+IDE + Sbjct: 1 MANK-----YDGSAIKILEGLEAVRKRPGMYIGSTSSA-GLHHLVWEIVDNSIDEVMNAN 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I+V L+ D S ++ D+GRGIP D++ + IS E ++T LHAGGKF++ +YK +GGL Sbjct: 55 AKNISVVLHEDNSISILDDGRGIPVDINPQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALS+WL + R+ IY+ F N G +D PL V G+ TGT + FLP Sbjct: 115 HGVGSSVVNALSAWLICEVYRDQKIYQAKFSNGGHIDQPLKVIGTTK-KTGTLIHFLPDP 173 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN +T++ RL E +FL ++IS DK + + G+ F+ +++ Sbjct: 174 LIFKNLFFNPNTIKERLHESTFLIKDLKISFEDKINNKK--YEFINDQGLIDFIKFINET 231 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK I + + + I +++A +++D +E ++ F N++ +GG H + ++ALT Sbjct: 232 KKT-FSDVIFFKNTINKIDVEVAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + +Y K K+ +++ GDD REG +SV+S+++P+ + QTK KL + E V+ Sbjct: 291 VNNYARKHDLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + D S WLEE+ +A +V + + A + AA+RAR+ T++ K + + + GKL Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 +DP +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR +L ++EI + Sbjct: 411 AQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M LI NG +YI Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +T + ++ + +E + + G ++ + L Sbjct: 530 ALPPLYKLTNKNTKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 2/105 (1%) Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + I + L K + LD + +K +QRYKGLGEMNA QL Sbjct: 522 IENGNIYIALPPLYKLTNKNTKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +ETT++P R LLRV I D QA+ + LMG++V RR++I N Sbjct: 581 FETTMDPSKRLLLRVNINDILQAERQINTLMGNDVSIRRQWIDNN 625 >gi|297205989|ref|ZP_06923384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] gi|297149115|gb|EFH29413.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus jensenii JV-V16] Length = 652 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 264/606 (43%), Positives = 373/606 (61%), Gaps = 13/606 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ +SYD SIQIL GL+AV+KRP MYIG TD G++ ++YE++DN++DE++ GY I Sbjct: 7 VKANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEI 65 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H E GI EVI T LHAGGKF +K+YK SGGLHGVG Sbjct: 66 NVTIHEDNSITVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 124 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS+LK+R+ R G YE F + G L G + TGT +TF P +FS Sbjct: 125 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFS 184 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + Y+T++ R+RE +FL V+ +L D+R+P Y GI++FVSYL+ K Sbjct: 185 TTKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDT 242 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +G +D+I I+ + ++NDGY EN + F NN+ DGG+H G RS TR Y Sbjct: 243 FGDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDY 302 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K+ ++++ G D REG ++VLSIK+P+ F QTK KL + + RS V++ V Sbjct: 303 AKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVY 362 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R Sbjct: 363 EKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSR 422 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 423 NPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHT 482 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F I+ Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI PP Sbjct: 483 IGAGVG-TEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPP 541 Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 LY + +G ++Y +E LE ++ F + + + ++ + Sbjct: 542 LYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESR 601 Query: 597 IDKLIK 602 + +K Sbjct: 602 MLIRVK 607 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNG---DKIKITGPCSLLDTIFSIGRKGIS 735 + +F +Y R + R+ + L KI+ L+ KG S Sbjct: 517 LLLTFFYRYMRPMVEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYS 576 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+VE RR++I++N Sbjct: 577 LQRFKGLGEMNADQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVEARRKWIEQN 636 >gi|284800187|ref|ZP_06390591.1| DNA gyrase subunit B [Neisseria subflava NJ9703] gi|284795800|gb|EFC51147.1| DNA gyrase subunit B [Neisseria subflava NJ9703] Length = 565 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 270/568 (47%), Positives = 368/568 (64%), Gaps = 5/568 (0%) Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++R K PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR Sbjct: 1 MNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQV 60 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ SV Sbjct: 61 MTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGSV 120 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V +N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLA Sbjct: 121 VNEVINQALTDFLEENPTEAKIITSKIVDAARAREAARKAREITRRKGVMDGLGLPGKLA 180 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ Sbjct: 181 DCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVA 240 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++Y Sbjct: 241 TLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIY 300 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY GK +Y+KDE + +L+ +L + + I +L N L Sbjct: 301 IAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFL 358 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +I+ D+ + + + + + + + ++A L+ L+ E+ Sbjct: 359 LAKTVIEQESRIIDELVLHAMLHASPVDLSTAESADRAVAE-LSGLLDEKEVALERIEGH 417 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + I + R G LE + S + + ++ L ++ Sbjct: 418 EGHQF-IKITRKLHGNVMVSYLEPKFLNSKAYQTLTQTAAALKGIVGKEAKLYKGDNEYD 476 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD+ Sbjct: 477 IDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADE 536 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 +F LMGDEVEPRR FI+ N+L + +D Sbjct: 537 VFVTLMGDEVEPRRAFIENNALLAQNID 564 >gi|302559661|ref|ZP_07312003.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000] gi|302477279|gb|EFL40372.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000] Length = 686 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 283/648 (43%), Positives = 399/648 (61%), Gaps = 24/648 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I V Sbjct: 30 TASYDASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVQEVVDNSVDEALAGHADTIDV 88 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 89 TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVS 148 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G+ + + G+ PL A +TGT VTF DIF D Sbjct: 149 VVNALSTRVAVEVKTDGHRWTQEYKLGVPTAPLAR-HEATEETGTSVTFWADGDIFETTD 207 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------------PEPREITMFYKGGIE 230 ++++TL R +E++FLN ++I+L D+R E + ++ Y+GGI Sbjct: 208 YSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKYEVKSVSYHYEGGIV 267 Query: 231 AFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGT 287 FV Y R + + + I ++ ++S+++AM+WN GY E V F N I +GGT Sbjct: 268 DFVKYLNSRKGELVHPTVIDLEAEDRDRHLSLEVAMQWNGGYTEGVYSFANIIHTHEGGT 327 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H G R+ALT I Y + ++ GDD REG T+++S+K+ +P+F QTK KL Sbjct: 328 HEEGFRAALTSLINKYARDKRLLRDKDDNLTGDDIREGLTAIISVKLAEPQFEGQTKTKL 387 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++EV++ V+ V + L+ WL+ +P EA I++K + A+ R AAR+ARDLTRRKG+L+ Sbjct: 388 GNTEVKTFVQKVVYEHLNDWLDRNPNEAADIIRKGIAAATARVAARKARDLTRRKGLLES 447 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR D+ Sbjct: 448 ASLPGKLSDCQSNDPVKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDR 507 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L +QEI +I+A GTG+ +D FDI +LRYHKII+M DADVDG HI TLLLTF FR M Sbjct: 508 ILQNQEIQAMISAFGTGVHED-FDIERLRYHKIILMADADVDGQHINTLLLTFLFRFMRP 566 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDL 587 L+ G +++ +PPLY I G+ + D LI + + DS L Sbjct: 567 LVEAGHVFLSRPPLYKIKWGRDDFEYAYSDRERDALIEMGRNAGKRIREDSVQRFKG--L 624 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLA 635 + L+I + ++ T + A +F+ +++ A Sbjct: 625 GEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLFSVLMGEDVEARRA 672 Score = 140 bits (353), Expect = 9e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR---KGI---SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +GR K I S+QR+KGLGEMNA +L TT++ + R L +V + DA+QADDLF Sbjct: 600 DALIEMGRNAGKRIREDSVQRFKGLGEMNAEELRITTMDQEHRVLGQVTLDDAAQADDLF 659 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 660 SVLMGEDVEARRAFIQRNAKDVRFLDI 686 >gi|256851124|ref|ZP_05556513.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260660548|ref|ZP_05861463.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN] gi|282932237|ref|ZP_06337681.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] gi|256616186|gb|EEU21374.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 27-2-CHN] gi|260548270|gb|EEX24245.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 115-3-CHN] gi|281303632|gb|EFA95790.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] Length = 647 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 264/606 (43%), Positives = 373/606 (61%), Gaps = 13/606 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 ++ +SYD SIQIL GL+AV+KRP MYIG TD G++ ++YE++DN++DE++ GY I Sbjct: 2 VKANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEI 60 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VT++ D S TV D GRG+PT +H E GI EVI T LHAGGKF +K+YK SGGLHGVG Sbjct: 61 NVTIHEDNSITVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVG 119 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALSS+LK+R+ R G YE F + G L G + TGT +TF P +FS Sbjct: 120 SSVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGSLKHLGKTNDKTGTTITFKPDERVFS 179 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 + Y+T++ R+RE +FL V+ +L D+R+P Y GI++FVSYL+ K Sbjct: 180 TTKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDT 237 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 +G +D+I I+ + ++NDGY EN + F NN+ DGG+H G RS TR Y Sbjct: 238 FGDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDY 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 +K K+ ++++ G D REG ++VLSIK+P+ F QTK KL + + RS V++ V Sbjct: 298 AKKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVY 357 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSER 420 + +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R Sbjct: 358 EKMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSR 417 Query: 421 DPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITA 480 +PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I Sbjct: 418 NPKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHT 477 Query: 481 LGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 +G G+G F I+ Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI PP Sbjct: 478 IGAGVG-TEFKIDDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPP 536 Query: 541 LYGITRGK----SLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 LY + +G ++Y +E LE ++ F + + + ++ + Sbjct: 537 LYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPESR 596 Query: 597 IDKLIK 602 + +K Sbjct: 597 MLIRVK 602 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 5/120 (4%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNG---DKIKITGPCSLLDTIFSIGRKGIS 735 + +F +Y R + R+ + L KI+ L+ KG S Sbjct: 512 LLLTFFYRYMRPMVEAGRVYIALPPLYRLQKGNGAKAKIEYAWTDEELERDEKAMGKGYS 571 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QR+KGLGEMNA QLW+TT+NP++R L+RVKI DA+ A+ + LMGD+VE RR++I++N Sbjct: 572 LQRFKGLGEMNADQLWQTTMNPESRMLIRVKIDDAALAERRVTTLMGDKVEARRKWIEQN 631 >gi|238787825|ref|ZP_04631622.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641] gi|238724168|gb|EEQ15811.1| DNA gyrase subunit B [Yersinia frederiksenii ATCC 33641] Length = 522 Score = 531 bits (1367), Expect = e-148, Method: Composition-based stats. Identities = 239/522 (45%), Positives = 336/522 (64%), Gaps = 8/522 (1%) Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G R+A+TR + SY++K SKK K S GDD REG +V+S+K+PDP+FSSQTK+KLVS Sbjct: 1 MGFRTAMTRTLNSYMDKEGYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVS 60 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SEV++ VE+ +N+ L +L E+P +AKI+V K++DA+ R+AAR+AR++TRRKG LD+ Sbjct: 61 SEVKTAVETLMNEKLVEYLLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLGG 120 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC ERDP SEL+LVEGDSAGGSAKQGR+R+NQAILPL+GKILNVE+ARFDKML Sbjct: 121 LPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKML 180 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 SSQE+ TLITALG GIG+D ++ +KLRYH IIIMTDADVDG+HIRTLLLTFF+RQMP +I Sbjct: 181 SSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEII 240 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +YI +PPLY + +GK QY+KD++++E Y + +L + +S L Sbjct: 241 ERGHVYIAQPPLYKVKKGKQEQYIKDDDAMEQYQMTLALDGAALHINEHAPALSGEPLER 300 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCES--DQEINVSLASKLANRLNFIAE 647 + + + K I + + + + E ++E+ L LN + Sbjct: 301 LVAEHYSVQKTIARMERRYPRALLNNLIYQPTLQEEELSNKEVVTQWIESLVALLNEKEQ 360 Query: 648 KSE-----KSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYL 702 + + +++ GV + L+ I + + +++ Sbjct: 361 HGSSYSAVVRENRERQLFEPILRIRTHGVDTDYELDFDFIHGGEYRKICLLGDKLRGLIE 420 Query: 703 TILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSL 762 + ++ ++ LD + R+G+++QRYKGLGEMN QLWETT++P+ R + Sbjct: 421 EGAFVERGDRRVPVSSFEGALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPEGRRM 480 Query: 763 LRVKITDASQADDLFSRLMGDEVEPRREFIQENSLP-SALDI 803 LRV + DA AD LF+ LMGD VEPRR FI+EN+L + +DI Sbjct: 481 LRVMVKDAIAADQLFTTLMGDAVEPRRAFIEENALRAANIDI 522 >gi|24940620|gb|AAN65247.1|AF329398_37 clorobiocin-resistant gyrase B [Streptomyces roseochromogenes subsp. oscitans] Length = 572 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 265/552 (48%), Positives = 362/552 (65%), Gaps = 20/552 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I VT Sbjct: 24 ASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DG V DNGRGIP H E A EV++T LHAGGKF Y VSGGLHGVG+SV Sbjct: 83 ILADGGVRVVDNGRGIPVGTHPVEKRPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGLSV 142 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALS+ L I +G + + +G PL A + TGT +TF DIF ++ Sbjct: 143 VNALSTRLSAEIWTDGYRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTEY 201 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRS--------------PEPREITMFYKGGIEAFV 233 +++TL R +E++FLN + ++L D+R P + ++ Y GGI FV Sbjct: 202 SFETLARRFQEMAFLNRGLTLTLTDERPSARATAAADEADSDPAAKTVSYRYDGGITDFV 261 Query: 234 SY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 +Y R +P S I I +S ++A++WN Y ++V + N I +GGTH Sbjct: 262 AYLNSRKGEPAHPSVITIAAEDTERLLSAEVALQWNGQYTDSVYSYANGIHTHEGGTHEE 321 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G R+ALT + Y + ++ ++ G+D REG T+++S+K+ +P+F QTK KL ++ Sbjct: 322 GFRTALTTVVNRYAREKKLLREKDANLSGEDVREGLTAIISVKLGEPQFEGQTKTKLGNT 381 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 E R+ V+ V++ L+ W + +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ A+L Sbjct: 382 EARTFVQKIVHEHLTDWFDRNPNEAADIVRKAIQAATARVAARKARDLTRRKGLLETAAL 441 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 PGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L Sbjct: 442 PGKLSDCQSNDPAMSEIFVVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEKARIDKILH 501 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 +QEI LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M L+ Sbjct: 502 NQEIQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHINTLLLTFLFRFMRPLVE 560 Query: 531 NGFLYIIKPPLY 542 G +Y+ +PPLY Sbjct: 561 EGHVYLSRPPLY 572 >gi|225077504|ref|ZP_03720703.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens NRL30031/H210] gi|224951166|gb|EEG32375.1| hypothetical protein NEIFLAOT_02567 [Neisseria flavescens NRL30031/H210] Length = 565 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 269/568 (47%), Positives = 366/568 (64%), Gaps = 5/568 (0%) Query: 236 LDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 ++R K PL + G +D +S++ AM+WND Y E+V CFTNNIPQ+DGGTHL+ LR Sbjct: 1 MNRKKTPLHEKIFYAFGEKDGMSVECAMQWNDSYQESVQCFTNNIPQRDGGTHLTALRQV 60 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 +TR I +Y+E + +KK K GDD REG T VLS+K+PDP+FSSQTK+KLVSSE+ V Sbjct: 61 MTRTINNYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPV 120 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 V +N L+ +LEE+P EAKII K++DA+ R+AAR+AR++TRRKGV+D LPGKLA Sbjct: 121 VNEVINQALTDFLEENPTEAKIITGKIVDAARAREAARKAREITRRKGVMDGLGLPGKLA 180 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC E+DP SEL+LVEGDSAGGSA QGR R+ QAILPL+GKILNVE+ARF+KML+SQE+ Sbjct: 181 DCQEKDPALSELYLVEGDSAGGSAMQGRDRKFQAILPLKGKILNVEKARFEKMLASQEVA 240 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 TLITALG GIG++ F+ KLRYH+IIIMTDADVDGAHIRTLLLTFF+RQMP L+ G++Y Sbjct: 241 TLITALGAGIGKEEFNAEKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQMPELVERGYIY 300 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 I +PPLY GK +Y+KDE + +L+ +L + + I +L N L Sbjct: 301 IAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIV--SDGRTIEGEELANTAKQFL 358 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHG 655 +I+ D+ + + + + + + ++A L+ L+ E+ Sbjct: 359 LAKTVIEQESRIIDELVLHAMLHTSPVDLSTAESAGRAVAE-LSGLLDEKEVALERIEGH 417 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 + I + R G LE + S + + ++ L ++ Sbjct: 418 EGHQF-IKITRKLHGNVVVSYLEPKFLNSKAYQTLTQTAAALKGMVGRGAKLYKGDNEYD 476 Query: 716 ITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 I LD + S+ +KG+S+QRYKGLGEMN QLWETT++P R LL+V+I DA AD+ Sbjct: 477 IDSFEGALDILMSVAQKGMSIQRYKGLGEMNPEQLWETTMDPTVRRLLKVRIEDAIAADE 536 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALD 802 +F LMGDEVEPRR FI+ N+L + +D Sbjct: 537 VFVTLMGDEVEPRRAFIENNALLAQNID 564 >gi|110801950|ref|YP_699349.1| DNA topoisomerase IV subunit B [Clostridium perfringens SM101] gi|110682451|gb|ABG85821.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens SM101] Length = 648 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 234/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N++YD S+ L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE GY Sbjct: 1 MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V LN D S TV DNGRGIPT +H + + E++ T LH GGKFN ++YK SGGL Sbjct: 58 GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169 HGVG +VVNALS WL++ +K+ G IY F G PL V G + +T Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT+VTFLP ++FS DF +D + RL+EL+F N +++ LID R E + + G+ Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285 F+ YL+ K PL +P+ +G ++ +I ++ +++ D EN++ + NNIP + Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E +++ W+E++ A +I+ L+A+ R+ ++ D R+K Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALEAAARREKIKKINDAERKKIGK 416 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 A L GK+A C+ ++ + +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + +++S+E+ TA+GTGI D+++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581 LI NG LY+ +PPLY + + + Y ++ LE+ G Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 595 MNPDQLWE 602 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 40/88 (45%), Positives = 59/88 (67%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 DKI L+ + KG ++QR+KGLGEMN QLWETTLNP+TR+L++V I Sbjct: 559 KGKDKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNPDQLWETTLNPETRTLVQVTIE 618 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796 DA++A+ + S LMGD V+PR+ ++ + + Sbjct: 619 DAAKAEKMVSLLMGDVVQPRKNYMYKYA 646 >gi|18147169|dbj|BAB83065.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3] gi|324039432|dbj|BAJ78469.1| DNA gyrase subunit B [Alcanivorax sp. ST-TB] gi|324039434|dbj|BAJ78470.1| DNA gyrase subunit B [Alcanivorax sp. ST-TC] gi|324039438|dbj|BAJ78472.1| DNA gyrase subunit B [Alcanivorax sp. ST-M1] gi|324039440|dbj|BAJ78473.1| DNA gyrase subunit B [Alcanivorax sp. ST-M2] gi|324039442|dbj|BAJ78474.1| DNA gyrase subunit B [Alcanivorax sp. ST-M3] gi|324039444|dbj|BAJ78475.1| DNA gyrase subunit B [Alcanivorax sp. ST-M4] gi|324039446|dbj|BAJ78476.1| DNA gyrase subunit B [Alcanivorax sp. ST-T1] gi|324039448|dbj|BAJ78477.1| DNA gyrase subunit B [Alcanivorax sp. ST-T2] gi|324039450|dbj|BAJ78478.1| DNA gyrase subunit B [Alcanivorax sp. ST-T4] gi|324039460|dbj|BAJ78483.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3] Length = 471 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 291/474 (61%), Positives = 370/474 (78%), Gaps = 4/474 (0%) Query: 32 IGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEE 91 IGDTD +GLHHM++EV+DN+IDE+L G+ I V ++ D S ++ DNGRGIPT++H+EE Sbjct: 1 IGDTDDGTGLHHMVFEVVDNSIDEALAGFCSEIKVVIHPDESMSIQDNGRGIPTEMHEEE 60 Query: 92 GISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFI 151 G+SAAEVIMT LHAGGKF+ +YKVSGGLHGVGVSVVNALS LKL I+R G ++E + Sbjct: 61 GVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYN 120 Query: 152 NGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211 +G+ PL V G + +GT V F PS + FS F+YD L RLRELSFLNS V+I L+ Sbjct: 121 HGVPAKPLEVVG-TTDSSGTAVHFRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLM 179 Query: 212 DKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYH 270 D+RS + Y+GG+ AFVSYL+ +K PL Q + D I++++AM+WND Y Sbjct: 180 DERSGDE--DVFEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQ 237 Query: 271 ENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVL 330 EN+ CFTNNIPQ+DGGTHL+G R+ALTR + SY++K KK+K S GDD REG T+V+ Sbjct: 238 ENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSYMDKEGFLKKEKASPSGDDAREGLTAVI 297 Query: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRD 390 S+K+PDP+FSSQTK+KLVSSEV+S VE + D +L E+P EA+ IV+K++DA+ RD Sbjct: 298 SVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGDLFQDYLLENPGEARSIVQKIIDAARARD 357 Query: 391 AARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAI 450 AAR+AR++TRRKG LDIA LPGKLADC ++DP SEL++VEGDSAGGSAKQGR R+NQAI Sbjct: 358 AARKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAI 417 Query: 451 LPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 LPL+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I KLRYH+IIIMT Sbjct: 418 LPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIEKLRYHRIIIMT 471 >gi|93009658|gb|ABE98141.1| DNA gyrase subunit B [Mesoplasma coleopterae] Length = 563 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 247/539 (45%), Positives = 348/539 (64%), Gaps = 7/539 (1%) Query: 27 RPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTD 86 RP MYIG T GLHH+++E++DN++DE++ G+A+ I +T+ +G V DNGRGIP Sbjct: 1 RPGMYIGSTSKA-GLHHLVWEIMDNSVDEAMAGFANKIILTITKEGEIIVQDNGRGIPVG 59 Query: 87 LHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIY 146 + + G SA E++ T+LHAGGKF+ SYK+SGGLHGVG SVVNALS ++ + +KREG I+ Sbjct: 60 IQADSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVEVKREGKIH 119 Query: 147 EMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQDFNYDTLQHRLRELSFLNS 204 F G + + G N+TGT V F P +IF +F+Y+T+++++++LS+LN Sbjct: 120 HQVFSGGGTQQTEIEIIGET-NETGTTVRFKPDPEIFLEGTEFDYETIRNKVKQLSYLNK 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 + I L D R + E GI +V + K + S + D+I +++A++ Sbjct: 179 GLVIELNDLRIDKHVEYHF--PNGILDYVKEKNETKVKINPSIFYVDDKHDDIEVEVALQ 236 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 +N Y EN++ F NNI +GGTH GLR +L R I Y EK K DD +E Sbjct: 237 YNAEYQENLITFVNNINTHEGGTHEDGLRQSLVRVINRYAEKVATGNKPAAKYSWDDIKE 296 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G ++SI+ DP++ QTK KL + + + V++ V D +L + P +AK I+ K + Sbjct: 297 GMVCIVSIRHTDPQYEGQTKTKLANPDAKKAVDAVVGDAFEEFLLKSPEDAKAIIDKNAN 356 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 A R AA+RAR+ TRRK LD SLPGKLADC +DP+ +EL+LVEGDSAGGSAK GR+ Sbjct: 357 AQKARIAAQRAREETRRKSALDTFSLPGKLADCESKDPEIAELYLVEGDSAGGSAKTGRN 416 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QAILPLRGK+LNVER + ++ EI +++TA+GTGI +D D++KLRY KI+IMT Sbjct: 417 RRFQAILPLRGKVLNVERVAEVRAFANNEIKSIVTAIGTGIKEDI-DLSKLRYGKIVIMT 475 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563 DADVDGAHIRTLLLTFF+R M L+ +G +YI +PPLY I GK + Y + LE+ Sbjct: 476 DADVDGAHIRTLLLTFFYRYMKQLVVDGHVYIAQPPLYKIEAGKKVAYAYSDVELEELK 534 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 7/138 (5%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E E+ +++ + + I ++ S +V V + Sbjct: 429 VLNVERVAEVRAFANNEIKSIVTAIGTGIKEDIDLSKLRYGKIVIMTDADVDGAHIRTLL 488 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTI----FSIGRKGISM 736 F + + + + L I G K+ L+ + F R ++ Sbjct: 489 LTFFYRYMKQLVVDGHVY-IAQPPLYKIEAGKKVAYAYSDVELEELKAGDFKDSR--FTI 545 Query: 737 QRYKGLGEMNASQLWETT 754 QRYKGLGEM+ QLWETT Sbjct: 546 QRYKGLGEMDPIQLWETT 563 >gi|182623989|ref|ZP_02951777.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens D str. JGS1721] gi|177910882|gb|EDT73236.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens D str. JGS1721] Length = 648 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N++YD S+ L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE GY Sbjct: 1 MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V LN D S TV DNGRGIPT +H + + E++ T LH GGKFN ++YK SGGL Sbjct: 58 GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169 HGVG +VVNALS WL++ +K+ G IY F G PL V G + +T Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT+VTFLP ++FS DF +D + RL+EL+F N +++ LID R E + + G+ Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285 F+ YL+ K PL +P+ +G ++ +I ++ +++ D EN++ + NNIP + Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E +++ W+E++ A +I+ LDA+ R+ ++ D R+K Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 A L GK+A C+ ++ + +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + +++S+E+ TA+GTGI D+++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 526 PSLIHNGFLYIIKPPLYGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 LI NG LY+ +PPLY + + + Y ++ LE+ G Sbjct: 536 RPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 595 MNPDQLWE 602 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 3/179 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + NV + +L I +++ D ++ V + Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527 Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737 + + I + + + + L DKI L+ + KG ++Q Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKLGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 R+KGLGEMN QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + + Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646 >gi|110800719|ref|YP_696749.1| DNA topoisomerase IV subunit B [Clostridium perfringens ATCC 13124] gi|168205877|ref|ZP_02631882.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens E str. JGS1987] gi|168212894|ref|ZP_02638519.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens CPE str. F4969] gi|168215696|ref|ZP_02641321.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens NCTC 8239] gi|169343680|ref|ZP_02864679.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C str. JGS1495] gi|110675366|gb|ABG84353.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens ATCC 13124] gi|169298240|gb|EDS80330.1| DNA topoisomerase II (N-terminal region) [Clostridium perfringens C str. JGS1495] gi|170662593|gb|EDT15276.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens E str. JGS1987] gi|170715591|gb|EDT27773.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens CPE str. F4969] gi|182382313|gb|EDT79792.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens NCTC 8239] Length = 648 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N++YD S+ L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE GY Sbjct: 1 MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V LN D S TV DNGRGIPT +H + + E++ T LH GGKFN ++YK SGGL Sbjct: 58 GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169 HGVG +VVNALS WL++ +K+ G IY F G PL V G + +T Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT+VTFLP ++FS DF +D + RL+EL+F N +++ LID R E + + G+ Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285 F+ YL+ K PL +P+ +G ++ +I ++ +++ D EN++ + NNIP + Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E +++ W+E++ A +I+ LDA+ R+ ++ D R+K Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 A L GK+A C+ ++ + +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + +++S+E+ TA+GTGI D+++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581 LI NG LY+ +PPLY + + + Y ++ LE+ G Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 595 MNPDQLWE 602 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 3/179 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + NV + +L I +++ D ++ V + Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527 Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737 + + I + + + + DKI L+ + KG ++Q Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 R+KGLGEMN QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + + Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646 >gi|18311051|ref|NP_562985.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13] gi|18145733|dbj|BAB81775.1| DNA topoisomerase IV subunit B [Clostridium perfringens str. 13] Length = 650 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 234/608 (38%), Positives = 356/608 (58%), Gaps = 23/608 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M + +N++YD S+ L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE GY Sbjct: 1 MYMSNKNNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 59 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V LN D S TV DNGRGIPT +H + + E++ T LH GGKFN ++YK SGGL Sbjct: 60 GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 119 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169 HGVG +VVNALS WL++ +K+ G IY F G PL V G + +T Sbjct: 120 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 178 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT+VTFLP ++FS DF +D + RL+EL+F N +++ LID R E + + G+ Sbjct: 179 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 238 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285 F+ YL+ K PL +P+ +G ++ +I ++ +++ D EN++ + NNIP + Sbjct: 239 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 298 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK Sbjct: 299 GTHETGFKTGMTRAFKEWAKKLNLIKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 358 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E +++ W+E++ A +I+ LDA+ R+ ++ D R+K Sbjct: 359 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 418 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 A L GK+A C+ ++ + +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + Sbjct: 419 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 478 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + +++S+E+ TA+GTGI D+++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 479 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 537 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581 LI NG LY+ +PPLY + + + Y ++ LE+ G Sbjct: 538 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 596 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 597 MNPDQLWE 604 Score = 144 bits (363), Expect = 7e-32, Method: Composition-based stats. Identities = 40/88 (45%), Positives = 59/88 (67%) Query: 709 CNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKIT 768 DKI L+ + KG ++QR+KGLGEMN QLWETTLNP+TR+L++V I Sbjct: 561 KGKDKILYAYSDDELEEVKKKVGKGATIQRFKGLGEMNPDQLWETTLNPETRTLVQVTIE 620 Query: 769 DASQADDLFSRLMGDEVEPRREFIQENS 796 DA++A+ + S LMGD V+PR+ ++ + + Sbjct: 621 DAAKAEKMVSLLMGDVVQPRKNYMYKYA 648 >gi|1708090|sp|P50075|GYRBS_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-sensitive gi|581743|emb|CAA78952.1| gyrase B (novobiocin-sensitive) [Streptomyces caeruleus] Length = 684 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 276/663 (41%), Positives = 385/663 (58%), Gaps = 27/663 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SY+A +I +L+GLDAV+KRP MYIG T GE GLHH++ EV+DN++DE+L G+AD I V Sbjct: 23 TGSYNASAITVLEGLDAVRKRPGMYIGST-GERGLHHLVTEVVDNSVDEALAGHADTIDV 81 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP + EG A EV++T LHAGGKF Y VSGGLHGVGVS Sbjct: 82 TILADGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYSVSGGLHGVGVS 141 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ + + +K +G + + G+ A ++TGT VTF D+F + Sbjct: 142 VVNALSTKVAVEVKTDGYRWTQDYKLGVPTRRCAQ-NEATDETGTTVTFWADPDVFETTE 200 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR---------------------SPEPREITMFY 225 ++++TL R +E++FLN + + L D+R R +T +Y Sbjct: 201 YSFETLSRRFQEMAFLNKGLTLKLTDERESAKAVVGADVAGTDSAETPGEEPVRSVTYYY 260 Query: 226 KGGIEAFVSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQ 282 +GGI FV Y R + + I I +S+++AM+WN Y E V F N I Sbjct: 261 EGGIVDFVKYLNSRKGDLIHPTVIDIDAEDKERMLSVEIAMQWNSQYSEGVYSFANTIHT 320 Query: 283 KDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQ 342 +GGTH G R+A+T + Y + ++ ++ G+D REG T+++S+K+ +P+F Q Sbjct: 321 HEGGTHEEGFRAAMTGLVNRYAREKKFLREKDDNLAGEDIREGLTAIISVKLGEPQFEGQ 380 Query: 343 TKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRK 402 TK KL ++E ++ V+ V++ L+ W + HP EA I++K + A+ R AAR+ARDLTRRK Sbjct: 381 TKTKLGNTEAKTFVQKIVHEHLTDWFDRHPNEAADIIRKSIQAATARVAARKARDLTRRK 440 Query: 403 GVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVER 462 G+L+ ASLPGKL+DC DP K E+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+ Sbjct: 441 GLLESASLPGKLSDCQSNDPSKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 500 Query: 463 ARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFF 522 AR DK+L + E+ LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF F Sbjct: 501 ARIDKILQNTEVQALISAFGTGVHED-FDIEKLRYHKIILMADADVDGQHINTLLLTFLF 559 Query: 523 RQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVI 582 R M L+ G +Y+ +PPLY I G+ + D L+ + DS Sbjct: 560 RFMRPLVEAGHVYLSRPPLYKIKWGRDDFEYAYSDRERDALVELGKQNGKRIKEDSIQRF 619 Query: 583 SKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRL 642 N + + + QA D E S + A + Sbjct: 620 KGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLFSVLMGEDVEARRSFIQRNAKDV 679 Query: 643 NFI 645 F+ Sbjct: 680 RFL 682 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 7/87 (8%) Query: 724 DTIFSIGR------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 D + +G+ K S+QR+KGLGEMNA +L TT++ D R L +V + DA+QADDLF Sbjct: 598 DALVELGKQNGKRIKEDSIQRFKGLGEMNAEELRITTMDVDHRVLGQVTLDDAAQADDLF 657 Query: 778 SRLMGDEVEPRREFIQENSLPSA-LDI 803 S LMG++VE RR FIQ N+ LDI Sbjct: 658 SVLMGEDVEARRSFIQRNAKDVRFLDI 684 >gi|126734075|ref|ZP_01749822.1| DNA gyrase, B subunit [Roseobacter sp. CCS2] gi|126716941|gb|EBA13805.1| DNA gyrase, B subunit [Roseobacter sp. CCS2] Length = 489 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 254/490 (51%), Positives = 340/490 (69%), Gaps = 4/490 (0%) Query: 315 RSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLE 374 S+ GDD REG T VLS+K+PDP+FSSQTK+KLVSSEVR VE+ + + L+ W EE+P E Sbjct: 1 MSLTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVENLMGEKLNEWFEENPNE 60 Query: 375 AKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDS 434 AK+I+ K+++A A R RRK +D+ KL DCSE+DP K+E+FLVEGDS Sbjct: 61 AKMIISKIVEA-AAAREAARKAREIRRKSAMDVNFNASKLKDCSEKDPSKTEVFLVEGDS 119 Query: 435 AGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINK 494 AGGSA+ GR R QAILPL+GKILNVERARFD+ML SQEIG L+ ALGTGIG+D F+I+K Sbjct: 120 AGGSAQTGRDRSTQAILPLKGKILNVERARFDRMLGSQEIGNLVMALGTGIGRDEFNIDK 179 Query: 495 LRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVK 554 LRYHK+IIMTDADVDGAHIRTLLLTFFFRQMP L+ G+LYI +PPLY ++RGKS Y+K Sbjct: 180 LRYHKVIIMTDADVDGAHIRTLLLTFFFRQMPELVEGGYLYIAQPPLYKVSRGKSEVYLK 239 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIE 614 D+ ++++YLI Q + + + IS NDLR +D+A ++ ++++ F ++ + +E Sbjct: 240 DQPAMDEYLIEQGIDGAML-RQGNGEEISGNDLRRVVDEARQLKRVLEAFPTHYPRHILE 298 Query: 615 QAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSI-NNSDILVKRIARGVQE 673 QA I+G F + A ++A RL+ IA + E+ W G I + + + RI RGV+E Sbjct: 299 QAAIAGAFVAGAVDNDLQGTADRVAQRLDLIALEWERGWQGRITQDKGMRLARILRGVEE 358 Query: 674 QFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKG 733 L+G + ++ F+ +++ Y +L+ I GP LL I G KG Sbjct: 359 VRTLDGPMLRGGEARRTGTFTQSLQDVYNLPATLVRKDRSQVIHGPLDLLKAILEEGEKG 418 Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQ 793 +S+QRYKGLGEMN QLWETTL+PD R+LL+VK+ D ++ADDLF++LMGD VEPRREFIQ Sbjct: 419 LSLQRYKGLGEMNPDQLWETTLDPDARTLLQVKVEDVAEADDLFTKLMGDVVEPRREFIQ 478 Query: 794 ENSLPS-ALD 802 N+L LD Sbjct: 479 NNALNVENLD 488 >gi|115524952|ref|YP_781863.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53] gi|115518899|gb|ABJ06883.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53] Length = 685 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 242/649 (37%), Positives = 354/649 (54%), Gaps = 23/649 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + Y A I++L+GL+ V++RP MYIG TD E LHH+ EV+DN++DE+L G+AD I Sbjct: 38 EAGDYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHADFIE 96 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L+ DG TV+DNGRGIP D H + SA EVIM LH+GGKF+ K Y+ SGGLHGVG Sbjct: 97 VELSADGFLTVTDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVG 156 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 VSVVNALSS L++ + R +Y+M+F G L G N GT + F P ++IF + Sbjct: 157 VSVVNALSSLLEVEVARGQQLYKMTFERGHPKGKLEDLGKVHNRRGTRIRFKPDTEIFGA 216 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237 F L R ++L V I P E + + GG++ F+ Sbjct: 217 KAAFKPQRLFKMARSKAYLFGGVVIRWKCDPELLKGLEDVPSEDSFHFPGGLKDFLGAAI 276 Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + + + R+ + + + A+ W + + N +P DGGTH SG+RSA Sbjct: 277 HNDTLVHPDIFSGKSGRNGAHGACEWAVAWTADADGFLSSYCNTVPTPDGGTHESGMRSA 336 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 L R + + E+ K+ SV +D G +LS+ + +P F QTK++L ++E + + Sbjct: 337 LLRGLKDHAERVGQGKRA-SSVTSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKI 395 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE + D WL +P +A +++ +++ + R R ++ RK + LPGKLA Sbjct: 396 VEQAIKDPFDHWLSGNPAQANKLLEFIIERADERLRRRAEKE-ISRKTAVKKLRLPGKLA 454 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC+ + SELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNV A DK++++ ++ Sbjct: 455 DCTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASAGKDKVVANAQLS 514 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 LI ALG G G + + + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI +G LY Sbjct: 515 DLIQALGCGTGAN-YREDDLRYARIIIMTDADVDGAHIASLLITFFYRQMPKLIDDGHLY 573 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDD-- 593 + PPLY +T G Y +D+ E+ L + + KG+ + + + Sbjct: 574 LAVPPLYRLTHGAKTVYARDDAHKEELLKKEFNANAKVDVGRFKGL--GEMMPAQLKETT 631 Query: 594 -----ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASK 637 + + D +E+ + + + AS Sbjct: 632 MDPAKRTLLRVNLADIDREGTADSVERLMGTKAEARFAFISDKAEFASD 680 Score = 98.5 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 7/72 (9%) Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFIQE 794 R+KGLGEM +QL ETT++P R+LLRV + D + AD + RLMG + E R FI + Sbjct: 615 RFKGLGEMMPAQLKETTMDPAKRTLLRVNLADIDREGTADSV-ERLMGTKAEARFAFISD 673 Query: 795 NSLPSA---LDI 803 + ++ LD+ Sbjct: 674 KAEFASDEMLDV 685 >gi|260664458|ref|ZP_05865310.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US] gi|260561523|gb|EEX27495.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii SJ-7A-US] Length = 652 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 263/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +SYD SIQIL GL+AV+KRP MYIG TD G++ ++YE++DN++DE++ GY I Sbjct: 8 KANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEIN 66 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H E GI EVI T LHAGGKF +K+YK SGGLHGVG Sbjct: 67 VTIHEDNSVTVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 125 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS+LK+R+ R G YE F + G L G + TGT +TF P +FS Sbjct: 126 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPDERVFST 185 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T++ R+RE +FL V+ +L D+R+P Y GI++FVSYL+ K Sbjct: 186 TKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDTF 243 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D+I I+ + ++NDGY EN + F NN+ DGG+H G RS TR Y Sbjct: 244 GDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYA 303 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K+ ++++ G D REG ++VLSIK+P+ F QTK KL + + RS V++ V + Sbjct: 304 KKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYE 363 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 364 KMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRN 423 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 424 PKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTI 483 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI PPL Sbjct: 484 GAGVGAE-FKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPL 542 Query: 542 YGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + ++Y +E LE ++ F + + + ++ ++ Sbjct: 543 YRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPDSRM 602 Query: 598 DKLIK 602 +K Sbjct: 603 LIRVK 607 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ ++ I + N D ++ + Sbjct: 459 VLNTQKAKLQDIFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILL 518 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + R+ + L G K KI L+ KG S+Q Sbjct: 519 LTFFYRYMRPMVEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQ 578 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NPD+R L+RVKI DA+ A+ + LMGD+VE RR++I++N Sbjct: 579 RFKGLGEMNADQLWQTTMNPDSRMLIRVKIDDAALAERRVTTLMGDKVEVRRKWIEQN 636 >gi|168208771|ref|ZP_02634396.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens B str. ATCC 3626] gi|170713087|gb|EDT25269.1| DNA topoisomerase, GyrB/ParE subunit family [Clostridium perfringens B str. ATCC 3626] Length = 648 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 235/608 (38%), Positives = 356/608 (58%), Gaps = 25/608 (4%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS+ N++YD S+ L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE GY Sbjct: 1 MSNK--NNNYDVTSLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEILDNSIDEISNGY 57 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + V LN D S TV DNGRGIPT +H + + E++ T LH GGKFN ++YK SGGL Sbjct: 58 GNKAKVILNKDKSVTVIDNGRGIPTGMHPIKKKTGVEMVFTELHTGGKFNNQNYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDT 169 HGVG +VVNALS WL++ +K+ G IY F G PL V G + +T Sbjct: 118 HGVGAAVVNALSRWLEVEVKQNGKIYRQRFEYAYDKELKKDMPGTPVTPLEVVGESK-ET 176 Query: 170 GTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGI 229 GT+VTFLP ++FS DF +D + RL+EL+F N +++ LID R E + + G+ Sbjct: 177 GTKVTFLPDREVFSTSDFKFDIIDERLQELAFQNKGIRLELIDNRKEESVSKEYYSERGL 236 Query: 230 EAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDG 285 F+ YL+ K PL +P+ +G ++ +I ++ +++ D EN++ + NNIP + Sbjct: 237 LDFIDYLNESKTPLHPTPVLFEGEKEVNNIQMYGEICLQFTDSTTENIVSYVNNIPTTEA 296 Query: 286 GTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKE 345 GTH +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK Sbjct: 297 GTHETGFKTGMTRAFKEWAKKLNLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKT 356 Query: 346 KLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVL 405 KL ++E +++ W+E++ A +I+ LDA+ R+ ++ D R+K Sbjct: 357 KLGNNEAYTMMNDLAYTKFGHWIEDNKEVATMIINNALDAAARREKIKKINDAERKKIGK 416 Query: 406 DIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARF 465 A L GK+A C+ ++ + +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + Sbjct: 417 GTAPLAGKVAVCTLKNKEANEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKL 476 Query: 466 DKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + +++S+E+ TA+GTGI D+++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 477 ENVIASEELKIFNTAIGTGI-LDNYNEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYM 535 Query: 526 PSLIHNGFLYIIKPPLYGITRGKSLQ----YVKDEESLEDYLINQSLSEEIELFCDSKGV 581 LI NG LY+ +PPLY + + + Y ++ LE+ G Sbjct: 536 RPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVG-KGATIQRFKGLGE 594 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 595 MNPDQLWE 602 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 3/179 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N E + NV + +L I +++ D ++ V + Sbjct: 468 IMNTEKQKLENVIASEELKIFNTAIGTGILDNYNEEDLKYDKIIIMSDADVDGYHIRTLW 527 Query: 681 SIFSFGSKYKRIFSNRI---EENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQ 737 + + I + + + + DKI L+ + KG ++Q Sbjct: 528 MTYIYRYMRPLIANGHLYLAQPPLYKVAKSGKGKDKILYAYSDDELEEVKKKVGKGATIQ 587 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 R+KGLGEMN QLWETTLNP+TR+L++V I DA++A+ + S LMGD V+PR+ ++ + + Sbjct: 588 RFKGLGEMNPDQLWETTLNPETRTLVQVTIEDAAKAEKMVSLLMGDVVQPRKNYMYKYA 646 >gi|238855703|ref|ZP_04646000.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3] gi|282932217|ref|ZP_06337664.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] gi|238831688|gb|EEQ24028.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 269-3] gi|281303667|gb|EFA95822.1| DNA topoisomerase IV, B subunit [Lactobacillus jensenii 208-1] Length = 647 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 263/605 (43%), Positives = 371/605 (61%), Gaps = 13/605 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +SYD SIQIL GL+AV+KRP MYIG TD G++ ++YE++DN++DE++ GY I Sbjct: 3 KANSYDDSSIQILHGLEAVRKRPGMYIGSTD-IKGINQLVYEIVDNSVDEAMAGYGKEIN 61 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 VT++ D S TV D GRG+PT +H E GI EVI T LHAGGKF +K+YK SGGLHGVG Sbjct: 62 VTIHEDNSVTVQDFGRGMPTGMH-ESGIPTIEVIFTVLHAGGKFTEKNYKTSGGLHGVGS 120 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV 184 SVVNALSS+LK+R+ R G YE F + G L G + TGT +TF P +FS Sbjct: 121 SVVNALSSYLKVRVVRGGQAYEEEFHDGGKPIGTLKHLGKTNDKTGTTITFKPDERVFST 180 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLM 244 + Y+T++ R+RE +FL V+ +L D+R+P Y GI++FVSYL+ K Sbjct: 181 TKYKYETIEERIRESAFLLKGVKFTLKDERTP-NHYEEFLYTDGIKSFVSYLNEG-KDTF 238 Query: 245 QSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 +G +D+I I+ + ++NDGY EN + F NN+ DGG+H G RS TR Y Sbjct: 239 GDVFYFEGKQDSIEIEFSGQYNDGYSENFVSFVNNVRTIDGGSHEMGARSGFTRAFNDYA 298 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVND 362 +K K+ ++++ G D REG ++VLSIK+P+ F QTK KL + + RS V++ V + Sbjct: 299 KKQGLLKEKEKNIEGSDYREGLSAVLSIKVPEELLEFEGQTKGKLGTPQARSAVDALVYE 358 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERD 421 +S +L E+ A+ +VKK A R+AA++ARD +R K L GKL R+ Sbjct: 359 KMSYYLLENGEFAQTLVKKAQKARDAREAAKKARDESRNGKKRRKKELLSGKLTPAQSRN 418 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 PKK+ELFLVEGDSAGGSAKQGR R+ QAILPLRGK+LN ++A+ + ++EI T+I + Sbjct: 419 PKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTQKAKLQDIFKNEEINTMIHTI 478 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G + F I Y KIIIMTDAD DGAHI+ LLLTFF+R M ++ G +YI PPL Sbjct: 479 GAGVGAE-FKIEDANYDKIIIMTDADDDGAHIQILLLTFFYRYMRPMVEAGRVYIALPPL 537 Query: 542 YGITR----GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 Y + + ++Y +E LE ++ F + + + ++ ++ Sbjct: 538 YRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQRFKGLGEMNADQLWQTTMNPDSRM 597 Query: 598 DKLIK 602 +K Sbjct: 598 LIRVK 602 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N + + ++ ++ ++ I + N D ++ + Sbjct: 454 VLNTQKAKLQDIFKNEEINTMIHTIGAGVGAEFKIEDANYDKIIIMTDADDDGAHIQILL 513 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICN-GDKIKITG--PCSLLDTIFSIGRKGISMQ 737 F + + + R+ + L G K KI L+ KG S+Q Sbjct: 514 LTFFYRYMRPMVEAGRVYIALPPLYRLQKGSGAKAKIEYAWTDEELERDEKAMGKGYSLQ 573 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 R+KGLGEMNA QLW+TT+NPD+R L+RVKI DA+ A+ + LMGD+VE RR++I++N Sbjct: 574 RFKGLGEMNADQLWQTTMNPDSRMLIRVKIDDAALAERRVTTLMGDKVEVRRKWIEQN 631 >gi|311742169|ref|ZP_07715979.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] gi|311314662|gb|EFQ84569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium marinum DSM 15272] Length = 666 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 283/630 (44%), Positives = 395/630 (62%), Gaps = 17/630 (2%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+YDA +IQ+L+GLDAV+KRP MYIG T GE GLHH++YEV+DN++DE+L G+A I V Sbjct: 12 ESTYDASNIQVLEGLDAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGHASHIEV 70 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 TL DG V D+GRGIP D H E I A +++T LHAGGKF YKVSGGLHGVGVS Sbjct: 71 TLLADGGVKVVDDGRGIPVDEHPIEKIPAVTLVLTSLHAGGKFGGGGYKVSGGLHGVGVS 130 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L + ++R+G+ + SF G+ D PL A +TGT TF S DIF + Sbjct: 131 VVNALSTRLFVEVRRDGHRWTQSFTYGVPDQPLEQ-HEATTETGTTTTFYASEDIFETTE 189 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRS----------PEPREITMFYKGGIEAFVSYL 236 ++Y+TL+ R RE++FLN +++ LID+R R++ Y GG+ +V ++ Sbjct: 190 YSYETLKTRFREMAFLNKGLELVLIDEREHAEDADDTADEVERQVRFRYDGGLVDYVQHI 249 Query: 237 DRHKK-PLMQSPIRIQGSRDN--ISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 + K + + I I+ D +S++LAM+WN + E+V F N I +GGTH G R Sbjct: 250 NTGAKAAIHRDIISIERDDDTGGMSLELAMQWNASFSESVHTFANTINTHEGGTHEEGFR 309 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +ALT + + E + KK + + GDD REG T+++S+K+ +P+F QTK KL ++E + Sbjct: 310 AALTTTVNRFAEANNLIKKKEDRLTGDDIREGLTAIISVKLAEPQFEGQTKTKLGNTEAK 369 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD-LTRRKGVLDIASLPG 412 V+ +N+ L AWLE +P E K IV+K +DA+ R AAR+ARD RKG L LPG Sbjct: 370 GFVQQVLNEQLGAWLEANPAEGKTIVRKSIDAASARMAARKARDLARNRKGFLGSGGLPG 429 Query: 413 KLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQ 472 KLADCS R+P++ E+F+VEG+SAGGSAK GR QAILPLRGKILNVE+AR DK+L + Sbjct: 430 KLADCSSRNPEECEVFIVEGNSAGGSAKGGRDPRTQAILPLRGKILNVEKARIDKILQNA 489 Query: 473 EIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNG 532 E+ +I+ALGTG+ +D FDI KLRYHKI++M DADVDG HI TLLLT FR M LI G Sbjct: 490 EVQAIISALGTGVHED-FDIAKLRYHKIVLMADADVDGQHISTLLLTLLFRFMKPLIDAG 548 Query: 533 FLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 +Y+ +PPLY I + + + D L+ L ++ I + ++ Sbjct: 549 HVYLAQPPLYKIKWSNATADLAYTDRERDALLAAGAESGKRLPKEAGQAIQRYKGLGEMN 608 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAVISGVF 622 D+ D + + ++ A ++ Sbjct: 609 DSELWDTTMDPDARVLRQVTLDDAAMADEI 638 Score = 154 bits (388), Expect = 9e-35, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 6/89 (6%) Query: 721 SLLDTIFSIGRK-----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADD 775 +LL G++ G ++QRYKGLGEMN S+LW+TT++PD R L +V + DA+ AD+ Sbjct: 578 ALLAAGAESGKRLPKEAGQAIQRYKGLGEMNDSELWDTTMDPDARVLRQVTLDDAAMADE 637 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LDI 803 +F+ LMG++VE RR FIQ N+ LDI Sbjct: 638 IFTILMGEDVEQRRSFIQRNAKDVRFLDI 666 >gi|320104795|ref|YP_004180386.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644] gi|319752077|gb|ADV63837.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644] Length = 652 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 246/622 (39%), Positives = 373/622 (59%), Gaps = 12/622 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 S + +++Y ++SI +L+GL+ V+KRP MYIG D GLHH+ +E++DNAIDE + G+A Sbjct: 10 SRSAASTNYTSESITVLEGLEPVRKRPGMYIGGLDKA-GLHHLCWEIVDNAIDEVMNGHA 68 Query: 62 DIITVTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V L DG + +VSDNGRGIP DLH + G SA EVI T LHAGGKF+ +YKV+GGL Sbjct: 69 SRIVVELEADGRTLSVSDNGRGIPVDLHAKTGKSALEVIFTTLHAGGKFDNNAYKVAGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L++++KR+G + ++ G + + V G TGT V F P + Sbjct: 129 HGVGASVVNALSERLEVKVKRDGFHFSQTYQRGKPTSEV-VKGEPARGTGTTVRFTPDRE 187 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHK 240 IF Q F+ + RL ++LN + I +D+++ + + GG+ F++ + R + Sbjct: 188 IFHDQVFDPVLIGERLDIKAYLNKGLSIQFVDRKAGTQ--VEYRHDGGVADFLNEIHRRR 245 Query: 241 KPLMQSPIRIQGSRDNI----SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + +P RD+ + LA+ W + E+VL F N IP +DGGTH G+R A+ Sbjct: 246 NDVKVAPTVFVLERDDPREGLRLHLALAWTEATDEHVLSFVNTIPTRDGGTHEQGMREAV 305 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 ++ + + K + G+D REG T+VLS+ + +P+F QTK +L + EVR++V Sbjct: 306 SKAVRKFFADH-DLLKKGMEIKGEDIREGLTAVLSVNIAEPQFQGQTKGRLNNPEVRALV 364 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI-ASLPGKLA 415 ES + L + ++ + + ++V+ A R+A+R A + RRK + +LPGKL Sbjct: 365 ESAIRPRLEDFFHKNKSVGEAVAERVIQAWRAREASRAAANQARRKSPVVGRLTLPGKLH 424 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC ++SELFLVEGDSAGGSAKQGR R QAILPL+GK+LN E+A K+L ++E+ Sbjct: 425 DCDSSKVEESELFLVEGDSAGGSAKQGRDRRIQAILPLKGKVLNAEQAGRAKVLDNKELS 484 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 +++ALG G+ D +D ++LRY KII++TDAD DG HI TLLLTFF+R +P L++ G ++ Sbjct: 485 DIVSALGCGM-DDQYDPSRLRYGKIILLTDADSDGHHIATLLLTFFYRHLPGLLNEGRVF 543 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + PPLY IT G+ + DE + L + +I + L Sbjct: 544 LACPPLYKITHGQDTYWAADEAAKAAILAKLPKNAKITMTRFKGLGEMPAKLLFETTLDP 603 Query: 596 KIDKLIKDFYPNHDKTFIEQAV 617 +L+K P+ D+ +++ + Sbjct: 604 ARRRLLKVVVPDEDRHYVDSTI 625 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ--ADDLFSRLMGDEVEPRREF 791 I+M R+KGLGEM A L+ETTL+P R LL+V + D + D + LMG + EPR F Sbjct: 580 ITMTRFKGLGEMPAKLLFETTLDPARRRLLKVVVPDEDRHYVDSTITDLMGKDPEPRFRF 639 Query: 792 IQENSLPS-ALDI 803 I E + + +DI Sbjct: 640 IMEEAYNARDIDI 652 >gi|315605502|ref|ZP_07880539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] gi|315312769|gb|EFU60849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral taxon 180 str. F0310] Length = 697 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 275/638 (43%), Positives = 370/638 (57%), Gaps = 30/638 (4%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 SY A I +L+GL+AV+KRP MYIG T GE GLHH++YEV+DN++DE+L GYAD I V Sbjct: 34 EQSYGASDITVLEGLEAVRKRPGMYIGST-GERGLHHLVYEVVDNSVDEALAGYADHIEV 92 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP D H E EV+MT LHAGGKF Y VSGGLHGVG+S Sbjct: 93 TIQADGGIKVVDNGRGIPVDEHPTEHKPTVEVVMTILHAGGKFGGGGYAVSGGLHGVGIS 152 Query: 127 VVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ 185 VVNALS+ + I+R+G ++ MSF N G L V G N+TGT F P IF Sbjct: 153 VVNALSTRVDTEIRRQGYVWRMSFANGGSPITEL-VRGEETNETGTTQVFYPDPTIFETV 211 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRS--------------------PEPREITMFY 225 +F+++TL+ R ++++FLN ++I+L D+R R ++ Y Sbjct: 212 EFDFETLRQRFQQMAFLNKGLRITLTDEREFATDEGDEIAGEDKASGKEAATHRTVSYCY 271 Query: 226 KGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIP 281 + G+ +V Y + + I + +S+++AM+W Y +V F N I Sbjct: 272 EYGLRDYVEYLDSAKKTDTINNEIIDFEAENDEGTMSVEIAMQWTSAYSSSVHTFANTIN 331 Query: 282 QKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSS 341 +GG H G R+ALT + Y + ++ GDD REG T+V+SIK+ +P+F Sbjct: 332 TTEGGMHEEGFRTALTSLVNRYGRDKGLIRDKDDNLTGDDVREGLTAVISIKLTEPQFEG 391 Query: 342 QTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR 401 QTK KL ++E R+ V V L+ W + HP +AK I+ K A R AAR+AR+ TRR Sbjct: 392 QTKTKLGNTEARTFVAQQVYSKLTDWFDAHPADAKAIIAKGQAAQAARVAARKAREATRR 451 Query: 402 KGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVE 461 KGVL+ AS+PGKL DCS R P + E+F+VEGDSAGGSA GR E QAILP+RGKILNVE Sbjct: 452 KGVLESASMPGKLRDCSSRTPSECEIFIVEGDSAGGSAVGGRDPERQAILPIRGKILNVE 511 Query: 462 RARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFF 521 +AR D+ LSS I +LITA GTGIG+D FDI+KLRY KI+IM DADVDG HI TLLLT Sbjct: 512 KARLDRALSSDTIRSLITAFGTGIGED-FDISKLRYGKIVIMADADVDGQHIATLLLTLL 570 Query: 522 FRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGV 581 FR M LI G +I PPLY I + + D L+ + L + Sbjct: 571 FRYMRPLIEGGHTFIAMPPLYRIKWTNAEHEFAYSDKERDQLLEAGATAGRRLPKEGG-- 628 Query: 582 ISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 I + ++D + + + +++A + Sbjct: 629 IQRYKGLGEMNDHELWETTMDPENRILKQVTLDEAADA 666 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 42/88 (47%), Positives = 59/88 (67%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL+ + GR+ G +QRYKGLGEMN +LWETT++P+ R L +V + +A+ AD+ Sbjct: 611 QLLEAGATAGRRLPKEG-GIQRYKGLGEMNDHELWETTMDPENRILKQVTLDEAADADET 669 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 F+ LMGD+V+ RR FIQ N+ LDI Sbjct: 670 FTILMGDDVDRRRTFIQRNATDVRFLDI 697 >gi|19909653|dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus] Length = 467 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 284/469 (60%), Positives = 370/469 (78%), Gaps = 3/469 (0%) Query: 35 TDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGIS 94 TD +GLHHM++EV+DN+IDE+L G+ I VT++ D S +VSD+GRGIPT+LH+EE +S Sbjct: 1 TDDGTGLHHMVFEVVDNSIDEALAGHCKDIIVTIHEDNSVSVSDDGRGIPTELHEEENVS 60 Query: 95 AAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGI 154 AAEVIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R G+I+ ++ +G+ Sbjct: 61 AAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGV 120 Query: 155 LDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR 214 PL V G TGT V F PS+D F+ +F+YD L RLRELSFLNS V I LID+R Sbjct: 121 PQAPLSVVGDTE-KTGTTVRFWPSADTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDER 179 Query: 215 SPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENV 273 E ++ Y+GGI+AFV++L+R+K P+ + R++ IS+++AM+WNDG+ E + Sbjct: 180 -EEDKQDHFMYEGGIQAFVTHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQEGI 238 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 CFTNNIPQ+DGGTHL+G R+ALTR + +Y++K SKK K+ GDD REG T+V+S+K Sbjct: 239 YCFTNNIPQRDGGTHLAGFRAALTRTLNTYMDKEGYSKKAKQRTSGDDAREGLTAVVSVK 298 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 +PDP+FSSQTK+KLVSSEV+S VES + + L+ +L EHP EAK++ K++DA+ R+AAR Sbjct: 299 VPDPKFSSQTKDKLVSSEVKSAVESAMGEKLNEFLAEHPSEAKMVCSKIIDAARAREAAR 358 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL Sbjct: 359 KAREMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPL 418 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 +GKILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III Sbjct: 419 KGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 467 >gi|319776855|ref|YP_004136506.1| topoisomerase iv subunit b [Mycoplasma fermentans M64] gi|238809640|dbj|BAH69430.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318037930|gb|ADV34129.1| Topoisomerase IV subunit B [Mycoplasma fermentans M64] Length = 637 Score = 529 bits (1362), Expect = e-147, Method: Composition-based stats. Identities = 262/590 (44%), Positives = 356/590 (60%), Gaps = 16/590 (2%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 YD SIQ LKGL+AV+KRP MYIG TD +GLHH+I+E++DN+IDE+L GYA+ I+VT Sbjct: 2 QKYDESSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGYANEISVT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L +GS V DNGRGIP G SA E++ T LHAGGKFN+ +YK SGGLHGVG SV Sbjct: 61 LTKNGSVKVMDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVGSSV 119 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VNALS+ L + + R+ IYE F NG + G+ N GT V F P+ +IF Sbjct: 120 VNALSTKLIVTVYRDKKIYETIFENGDNIVQRTLEVGNT-NKHGTMVEFWPNYEIFKRAK 178 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+Y+T+ RLRE FL ++I D+ S RE Y+ G+ AFV +++ K L Sbjct: 179 FSYETIAERLRESCFLIGGLRIHFKDEISD--RETEFMYEDGLHAFVDFINDSKNALG-D 235 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + ++ +I ++ ++ D Y+E VL F NN+ KDGGTH GL+SALT+ + + Sbjct: 236 IKTFKETKRDIEVECGFQYTDSYNETVLSFVNNVKTKDGGTHEIGLKSALTKTFNEFALE 295 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K + GDD REG T +LS+K+P+ F SQTKEKL + E + VVE V+ Sbjct: 296 EKALK-GKNTFDGDDIREGLTIILSVKIPEKLLEFVSQTKEKLGTPEAKGVVEEIVSKNF 354 Query: 365 SAWLEEHPLEAKIIVKKVLDASMV--RDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 W+ E+ AK I++K+ AS RA + + + + L GKL + P Sbjct: 355 KIWINENKPLAKKILEKIKRASESRAAARKARAEARSTKNALKEKQILSGKLTPAQSKVP 414 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 + ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR ++L ++EIGT+I +G Sbjct: 415 AEKELFLVEGDSAGGSAKLGRDRKYQAILPLRGKVINTEKARLFEILKNEEIGTIINTIG 474 Query: 483 TGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLY 542 G+G D FD+ K +Y K++IMTDAD DGAHI+ LLLTFFFR M L+ NG +YI PPL+ Sbjct: 475 AGVG-DEFDLKKAQYGKVVIMTDADTDGAHIQILLLTFFFRHMRQLVENGMVYIALPPLF 533 Query: 543 GITR---GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 +T K + Y DE L + L + G ++ + L Sbjct: 534 KLTSTRGKKEVLYAWDENELRELLQLPNFKNAEVQRYKGLGEMNADQLWE 583 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 41/64 (64%), Positives = 51/64 (79%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 K +QRYKGLGEMNA QLWETT+NP TR+L++VKI DA+ A+ S LMGD VEPR+E+ Sbjct: 563 KNAEVQRYKGLGEMNADQLWETTMNPITRTLVQVKIEDAALAERRVSTLMGDNVEPRKEW 622 Query: 792 IQEN 795 I +N Sbjct: 623 INKN 626 >gi|296453192|ref|YP_003660335.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JDM301] gi|296182623|gb|ADG99504.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. longum JDM301] Length = 709 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 260/654 (39%), Positives = 373/654 (57%), Gaps = 30/654 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 43 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 101 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 102 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND---TGTEVTFLPSS 179 VG+SVVNALS+ + + ++R+G + ++I+ PL G + TGT VTF Sbjct: 162 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQ-GDPMTEGESTGTSVTFWADP 220 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREIT 222 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 221 KIFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVT 280 Query: 223 MFYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTN 278 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 281 YQYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFAN 340 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+ Sbjct: 341 TISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQ 400 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 F QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ Sbjct: 401 FEGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKAREN 460 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKIL Sbjct: 461 TRRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKIL 520 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 N ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL L Sbjct: 521 NTERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNL 579 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577 T FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 580 TLFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGE 639 Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 640 GIQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 691 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 622 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 681 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 682 FSMLMGDEVEPRRLFIQRNAKNV 704 >gi|291517729|emb|CBK71345.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum F8] Length = 712 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 261/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 46 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 105 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQDEPMTEGESTGTSVTFWADPK 224 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + IT Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTITY 284 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 464 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707 >gi|325283469|ref|YP_004256010.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP] gi|324315278|gb|ADY26393.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus MRP] Length = 655 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 279/608 (45%), Positives = 392/608 (64%), Gaps = 23/608 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEG 59 M++ NS+Y ADSI ILKGL+AV+KRP MY+ G T G G H ++ E++DNAIDE L G Sbjct: 1 MTN--PNSNYTADSISILKGLEAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNAIDEGLAG 57 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A+ ITVT++ DGS TV+DNGRGIP D+ K EG SA EVI T LHAGGKF Q +YKVSGG Sbjct: 58 FANEITVTMHEDGSATVTDNGRGIPVDIMKSEGRSAIEVIFTELHAGGKFGQGAYKVSGG 117 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND--TGTEVTFLP 177 LHGVG SVVNALS++L + + + G ++ + F G++ PL V G D T+V+F P Sbjct: 118 LHGVGSSVVNALSTYLDVTVNKGGQLHHIRFEKGVVTTPLEVLGKTPKDVTWSTKVSFHP 177 Query: 178 SSDIFSVQD--FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEA 231 +FS + F+YD ++ RLREL++L + ++I L D+ + E RE T +GGI Sbjct: 178 DPAVFSEFENLFDYDRIRRRLRELAYL-TGLKIVLRDERAVLHAGEVREETFHEQGGIAN 236 Query: 232 FVSYLDRHKKP-LMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHL 289 F + L L PI ++G+ +++ +++A + Y +N+L + N I +DGGT L Sbjct: 237 FAASLVSDSTKLLYDQPIVMRGTSNDVEVEVAFIHANTYSSDNILTYANMIRTRDGGTPL 296 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G ++A TR + Y + K + GDD EG V+S+K+ DP+F SQ K KL++ Sbjct: 297 TGFKTAYTRILNKYAKDKNLVKSGNPAPSGDDLLEGIYCVISVKLGDPQFESQAKVKLLN 356 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SE ++ V + V + + +LEE+P K IV+K +A+ R+AAR+ARD+ RR L+ Sbjct: 357 SEAQTAVNAIVGEKFAEFLEENPKVGKTIVEKAAEAARAREAARKARDIVRRSNPLENDD 416 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADCS +DP +SELF+VEG+SAGGSAK GR R QAILPLRGKILNVE+A +K L Sbjct: 417 LPGKLADCSSQDPSESELFIVEGNSAGGSAKSGRERRFQAILPLRGKILNVEKAELNKSL 476 Query: 470 SSQEIGTLITALGTGIGQD----SFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + EI ++I A+G G+ FD+ +LRYHKIIIMTDAD+DG HI TLLLTFFFR M Sbjct: 477 KNAEIRSMIAAIGAGVDGSGDQLRFDVEQLRYHKIIIMTDADMDGGHITTLLLTFFFRYM 536 Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGV 581 ++ G LYI +PPLY IT R K+ +Y+ +++ L ++ + + G Sbjct: 537 KPVVEQGHLYIAQPPLYRITVGRQKTGEYLYNDDELRQHVARANKEGKKFEIQRFKGLGE 596 Query: 582 ISKNDLRN 589 ++ + L Sbjct: 597 MNADQLWE 604 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 1/74 (1%) Query: 728 SIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 G+K +QR+KGLGEMNA QLWETT+NP+TR L +V I D A+++F LMG +V P Sbjct: 581 KEGKK-FEIQRFKGLGEMNADQLWETTMNPETRVLKQVAIEDLLVANEIFEDLMGSDVAP 639 Query: 788 RREFIQENSLPSAL 801 R+ FIQEN+ + + Sbjct: 640 RKVFIQENARFAEI 653 >gi|28566177|gb|AAO43433.1| DNA gyrase subunit B [Entomoplasma somnilux] Length = 551 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 245/539 (45%), Positives = 358/539 (66%), Gaps = 7/539 (1%) Query: 28 PSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDL 87 P MYIG T SGLHH+++E+LDN+IDE++ G A I V++ DG V D+GRGIP + Sbjct: 1 PGMYIGSTSK-SGLHHLVWEILDNSIDEAMAGAAHEIKVSITKDGEIIVQDDGRGIPVGI 59 Query: 88 HKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYE 147 K+ G SA E++ T+LHAGGKF+ SYK+SGGLHGVG SVVNALS ++ + ++R+G + Sbjct: 60 QKDSGKSALELVFTQLHAGGKFDSDSYKISGGLHGVGASVVNALSLYVDVIVERDGKKFH 119 Query: 148 MSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDFNYDTLQHRLRELSFLNSS 205 F NG + L + + TGT V F P +IF +F+Y T+++++++L++LN Sbjct: 120 QLFSNGGTIQSELEILSDSS-RTGTTVRFKPDPEIFQESVNFDYITIKNKVKQLAYLNKG 178 Query: 206 VQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRW 265 ++++L+D+R + + + GI +V + K + + G ++I +++A+++ Sbjct: 179 IKLNLVDERIDKA--VNFHFPNGILDYVREENETKTKINPNVFYTDGKFEDIEVEVALQY 236 Query: 266 NDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREG 325 N Y+EN++ F NNI +GGTH GLR +LTR I Y EK + K + DD +EG Sbjct: 237 NADYNENLITFVNNINTHEGGTHEDGLRQSLTRVINRYAEKVVKANKQPQKFSWDDVKEG 296 Query: 326 FTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDA 385 +LSI+ DP+F QTK KL + + + V++ V D +L + P +AK I+ K +A Sbjct: 297 VICILSIRHTDPQFEGQTKTKLANPDAKKAVDTIVGDAFEEFLLKSPDDAKAILDKNTNA 356 Query: 386 SMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSR 445 R AA+RAR+ TRRKG LD SLPGKLADC +DP +EL+LVEGDSAGGSAK GR+R Sbjct: 357 QKARIAAQRAREETRRKGALDTFSLPGKLADCETKDPTIAELYLVEGDSAGGSAKTGRNR 416 Query: 446 ENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTD 505 ++QAILPLRGK+LNVER + + ++ EI +++TA+GTGI +D D++K+RY KI+IMTD Sbjct: 417 KHQAILPLRGKVLNVERVQEARAFTNNEIKSIVTAIGTGIKEDL-DLSKIRYGKIVIMTD 475 Query: 506 ADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 ADVDGAHIRTLLLTFF+R M L+ NG ++I +PPL+ I GK + Y + LE+ + Sbjct: 476 ADVDGAHIRTLLLTFFYRYMKDLVRNGNIFIAQPPLFKIEAGKKVAYAYSDAELEELKL 534 >gi|294677614|ref|YP_003578229.1| DNA topoisomerase IV subunit B [Rhodobacter capsulatus SB 1003] gi|3128305|gb|AAC16157.1| DNA gyrase subunit b [Rhodobacter capsulatus SB 1003] gi|294476434|gb|ADE85822.1| DNA topoisomerase IV, B subunit [Rhodobacter capsulatus SB 1003] Length = 652 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 239/627 (38%), Positives = 337/627 (53%), Gaps = 18/627 (2%) Query: 4 NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADI 63 + + +YDA SI++L+GL+ V+KRP MYIG TD E LHHM+ E+LDNA+DE++ G+A+ Sbjct: 8 STPSETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEILDNAMDEAVAGHANR 66 Query: 64 ITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V +N DGS TV DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y SGGL+G Sbjct: 67 IEVEVNADGSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSNKAYSTSGGLNG 126 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF 182 VG SVVNALS + +++ R +YE F G+ P+ G+A N GT VTF P +IF Sbjct: 127 VGSSVVNALSDLMVVQVARNKELYEQRFSRGVPQGPVAKLGAAPNRRGTTVTFHPDPEIF 186 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFVSYLDRHK 240 L R ++L S V+I P E T + G+ +++ Sbjct: 187 GSLSLKPARLFKMTRSKAYLFSGVEIRWKTAIADGDTPTEATFHFPNGLADYLAEALTGA 246 Query: 241 KPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 P + S++ A+ W + + N +P +GGTH +G +A Sbjct: 247 STYSDKPFAGRVSFEEKYNIPGSVEWAINWTPVRDGFIHSYCNTVPTPEGGTHEAGFWAA 306 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 + + I +Y E+ K + + +D G +++SI + +P F QTK++L + E Sbjct: 307 ILKGIRAYGERINNKKAAQ--ITREDMLTGGCALISIFIREPSFVGQTKDRLSTEEAARW 364 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE+ V D WL A I+ ++ + R + ++ T RK LPGKL Sbjct: 365 VENAVRDYFDTWLTTDTKAAGAILDFLVLRAEERLRRKAEKE-TSRKSATKKLRLPGKLV 423 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DCS + + +ELF+VEGDSAGGSAK R R QA+LPLRGKILNV A K+ +QEI Sbjct: 424 DCSATNREGTELFIVEGDSAGGSAKMARDRTMQALLPLRGKILNVLGAASSKLGQNQEIN 483 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L ALG G+G F ++ LRY KIIIMTDADVDGAHI +LL+TFFF QM LI G LY Sbjct: 484 DLAQALGVGLG-TKFRVDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLY 542 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFIDD 593 + PPLY +T+G YV D+ + ++ G + DL++ + Sbjct: 543 LACPPLYRLTQGAKRIYVADDAEKDVWMAKGLGGRGKIDVQRFKGLGEMDAKDLKDTTMN 602 Query: 594 ---ALKIDKLIKDFYPNHDKTFIEQAV 617 I I D + +E+ + Sbjct: 603 PATRKLIRVTIDDEFAGETDDLVERLM 629 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 5/149 (3%) Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 D ++ V + F F I + + L +I + Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFTQMRGLIDKGHLYLACPPLYRLTQGAKRIYVADD 563 Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD--ASQADD 775 + +G +G I +QR+KGLGEM+A L +TT+NP TR L+RV I D A + DD Sbjct: 564 AEKDVWMAKGLGGRGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVTIDDEFAGETDD 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L RLMG + E R ++I EN+ LD+ Sbjct: 624 LVERLMGKKPELRFQYITENARFVEELDV 652 >gi|317482363|ref|ZP_07941383.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA] gi|316916243|gb|EFV37645.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA] Length = 712 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 46 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 465 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707 >gi|332641361|gb|AEE74882.1| DNA gyrase subunit B [Arabidopsis thaliana] Length = 772 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 260/629 (41%), Positives = 368/629 (58%), Gaps = 44/629 (6%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 92 ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 150 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA--GGKFNQKSYKVSGGL 120 I V L+ D S ++SDNGRGIPTDLH G S+ E ++T LHA Y VSGGL Sbjct: 151 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 210 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ ++R+G ++ + G L + GT + F P Sbjct: 211 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 270 Query: 178 SSDIFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEAFVS 234 ++F+ F+++T+ R+REL+FLN V ISL + R++ FY GG+ +VS Sbjct: 271 DKEVFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVS 330 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLR 293 +L+ KKPL + + ++D++++W D Y + +L + N+I DGGTH+ G++ Sbjct: 331 WLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 389 Query: 294 SALTRQITSYVEKSF--------------------------------GSKKDKRSVIGDD 321 ++LTR + S +K + + S+ G+ Sbjct: 390 ASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEH 449 Query: 322 CREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 REG T ++S+K+P+P F QTK +L + EVR +V+ V + L+ +LE HP + I+ K Sbjct: 450 VREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISK 509 Query: 382 VLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQ 441 L+A AA+RAR+L R K VL +SLPGKLADCS DP +SE+F+VEGDSAGGSAKQ Sbjct: 510 SLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQ 569 Query: 442 GRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKII 501 GR R QAILPLRGKILN+ER M ++EI LI LG G+ + F+ LRYHKII Sbjct: 570 GRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKII 629 Query: 502 IMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED 561 I+TDADVDGAHIRTLLLTFFFR +L G +Y+ PPL+ + RGK Y D+ +L+ Sbjct: 630 ILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKK 689 Query: 562 YLINQSLSEE-IELFCDSKGVISKNDLRN 589 + + G + L Sbjct: 690 ITASFPGNASYNIQRFKGLGEMMPAQLWE 718 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 9/190 (4%) Query: 621 VFNCESDQEINVSLASKLAN-RLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEG 679 + N E E + ++ N L + ++ ++ V + Sbjct: 585 ILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTL 644 Query: 680 SSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQ 737 F F + + I + + + L I + G ++Q Sbjct: 645 LLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYD-DAALKKITASFPGNASYNIQ 703 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS- 796 R+KGLGEM +QLWETT+NPDTR L ++ + DA++ + +FS LMG V+ R+E I+ + Sbjct: 704 RFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKSAAT 763 Query: 797 ---LPSALDI 803 L LDI Sbjct: 764 RMNLE-NLDI 772 >gi|23335943|ref|ZP_00121174.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Bifidobacterium longum DJO10A] Length = 712 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 46 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707 >gi|227547507|ref|ZP_03977556.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212022|gb|EEI79918.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 712 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 46 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 105 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 165 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 224 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 284 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 404 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 464 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 465 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707 >gi|323464525|gb|ADX76678.1| DNA topoisomerase IV, B subunit [Staphylococcus pseudintermedius ED99] Length = 665 Score = 528 bits (1360), Expect = e-147, Method: Composition-based stats. Identities = 261/598 (43%), Positives = 372/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N +Y D+IQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MSAKKVN-NYSDDAIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEILNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N D S TV+DNGRG+PT H G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTINEDESITVADNGRGMPTGTH-RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L + I R+G I+E F +G + ++ TGT VTF P ++ Sbjct: 118 HGVGASVVNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAE 177 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN++TL RL+E +FL +++I+L D R + R Y+ GI+AFVSY++ Sbjct: 178 IFKSATSFNFETLSERLQESAFLLQNLKITLEDCRVGKERSEVYHYEEGIKAFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + QG+ + I +D++ ++ND Y E+++ F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLHDVAL-FQGTANEIEVDVSFQYNDQYSESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+++S+++P+ +F QTK KL + E RS V+ Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F++ Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G +Y Sbjct: 477 TIIHTIGAGVGND-FNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K + Y +E LE + G ++ + L Sbjct: 536 IALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGKGF-VLQRYKGLGEMNPDQLWE 592 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I ++ +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 + ++ + F F + + R+ + L KI Sbjct: 498 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMN QLWETT+NP+TR+L+RV+I D ++ Sbjct: 558 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+V PRRE+I+ + Sbjct: 618 STLMGDKVAPRREWIERH 635 >gi|322688196|ref|YP_004207930.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F] gi|320459532|dbj|BAJ70152.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F] Length = 696 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 374/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 30 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 89 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I+ G++Y+ PPLY + K +V + + L + + Sbjct: 568 LFFRYMRPMINAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691 >gi|162452728|ref|YP_001615095.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] gi|161163310|emb|CAN94615.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56'] Length = 645 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 237/637 (37%), Positives = 356/637 (55%), Gaps = 20/637 (3%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 Y A I++L+GL+ V+KRP+MYIG TD G HH+++E++DNA+DE++ G+A I VTL+ Sbjct: 16 YTAADIEVLEGLEPVRKRPAMYIGGTDA-RGYHHLLWEIVDNAVDEAINGHAKRIEVTLD 74 Query: 70 MD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 D TV+D+GRGIP D+H A E+I LHAGGKF +YKVSGGLHGVG SVV Sbjct: 75 ADLQGATVTDDGRGIPVDVHPRYKRPALELIFCTLHAGGKFASDNYKVSGGLHGVGSSVV 134 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSV-QDF 187 NALS +++R+ R+G+ ++ +F G + L G+ GT + F P +IF + F Sbjct: 135 NALSELVEVRVLRDGSEHQQTFSRGAPTSKLKK-GAPTRKHGTTIHFRPDPEIFGQGRRF 193 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSY-LDRHKKPLMQS 246 + +T++ RL ++L+ ++I+ D S E I + + GI F+ + + KP+ Sbjct: 194 DPETIRERLEAKAYLHGGLEIAFRDLSSGES--IELLHPNGIADFLPKLVAQRGKPVTHP 251 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 I I ++ A++W + E V + N IP GG H SG A+ + + ++++ Sbjct: 252 SIFYVAREGEIRLEAALQWTESTDEYVKSYVNGIPTHAGGAHESGFSGAIVKAVRAFMDA 311 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 + ++ DD REG VLSI + DP+F QTK++L ++E VE V L Sbjct: 312 KKV-QPKGVTLTADDIREGIVGVLSIYIQDPQFQGQTKDRLNNAEAGPAVEGMVRPALEQ 370 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCSERDPKKS 425 W+ + + IV + + A+ R+A R A RK +LPGKLADC+ DP +S Sbjct: 371 WMLHNGTAGESIVARAILAARAREARREATQQVLRKTPVSHRLNLPGKLADCASTDPSES 430 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEGDSAGGSAKQGR R QAILPLRGK+LN E+A K+L ++E+ +++ALG G Sbjct: 431 ELFIVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTSKVLGNKELQDIVSALGCGF 490 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G+D FD +KLRY +I ++ DAD DG HI TLLLTFF+R +P L+ G +++ +PPLY I Sbjct: 491 GKD-FDASKLRYGRIFLLMDADSDGQHIATLLLTFFYRHLPGLLRGGHVFLAQPPLYRID 549 Query: 546 RGKSLQYVKDEESLEDYLINQSL-SEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDF 604 GK + D+ + L ++ G + DL+ D + Sbjct: 550 VGKETHWALDDAERDRVLAKLPKTAKADISRFKGLGEMPAEDLKATTLDIRR-------- 601 Query: 605 YPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANR 641 + IE + + E + + + R Sbjct: 602 -RRALRIVIEGEIETDRILNELMGKDAQARFRFIMER 637 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%) Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 + R+KGLGEM A L TTL+ R LR+ I + D + + LMG + + R FI E Sbjct: 578 ISRFKGLGEMPAEDLKATTLDIRRRRALRIVIEGEIETDRILNELMGKDAQARFRFIMER 637 Query: 796 SLPSALDI 803 + + +D+ Sbjct: 638 APNAEIDV 645 >gi|71725925|gb|AAZ39080.1| gyrase subunit B [Exiguobacterium acetylicum] Length = 513 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 270/516 (52%), Positives = 366/516 (70%), Gaps = 4/516 (0%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 KRP MYIG T GLHH+++E++DN+IDE+L GY D I VT+ S V DNGRGIP Sbjct: 1 KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS+ L++ +KR + Sbjct: 60 DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204 Y ++ G+ L V G +TGT + F P +IF +++YD L RLREL+FLN Sbjct: 120 YYQAYHRGVPAQDLEVIG-TSEETGTTIRFFPDGEIFQETLEYDYDLLATRLRELAFLNK 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 ++I + D R+ E + Y+GGI+++V +L+R K+ + P+ + G++D I +++A++ Sbjct: 179 GLKIIITDDRADESMTRSFHYEGGIKSYVEHLNRSKEVVHAEPVYVHGTKDGIEVEVALQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 +NDG+ N+ FTNNIP +GGTH +G ++ALTR I Y +K K ++ G+D RE Sbjct: 239 YNDGFASNIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKDADGTLSGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+++S+K P+P+F QTK KL +S+ R+V +S + ++ E+P A+ IV+K + Sbjct: 299 GMTAIVSVKHPNPQFEGQTKTKLGNSDARTVTDSLFSGAFEQFMLENPTNARAIVEKGMM 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR+LTRRKGVL+++SLPGKLADCS RD SEL++VEGDSAGGSAK GR Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDASISELYIVEGDSAGGSAKSGRD 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + FDI K RYHK+IIMT Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FDIEKARYHKVIIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 DADVDGAHIRTLLLTFF+R M L+ +G++YI +PP Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513 >gi|312133628|ref|YP_004000967.1| gyrb [Bifidobacterium longum subsp. longum BBMN68] gi|311772886|gb|ADQ02374.1| GyrB [Bifidobacterium longum subsp. longum BBMN68] Length = 696 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 30 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 89 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691 >gi|23465218|ref|NP_695821.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705] gi|189440294|ref|YP_001955375.1| DNA gyrase subunit B [Bifidobacterium longum DJO10A] gi|239622838|ref|ZP_04665869.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325846|gb|AAN24457.1| DNA gyrase subunit B, novobiocin-sensitive [Bifidobacterium longum NCC2705] gi|189428729|gb|ACD98877.1| Type IIA topoisomerase B subunit [Bifidobacterium longum DJO10A] gi|239514835|gb|EEQ54702.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 696 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 30 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 89 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 269 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 449 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691 >gi|319892372|ref|YP_004149247.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius HKU10-03] gi|317162068|gb|ADV05611.1| Topoisomerase IV subunit B [Staphylococcus pseudintermedius HKU10-03] Length = 665 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 261/598 (43%), Positives = 373/598 (62%), Gaps = 15/598 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N +Y D+IQ+L+GL+AV+KRP MYIG TD GLHH++YEV+DN++DE L GY Sbjct: 1 MSAKKVN-NYSDDAIQVLEGLEAVRKRPGMYIGSTDK-RGLHHLVYEVVDNSVDEILNGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I VT+N D S TV+DNGRG+PT H G EVI T LHAGGKF Q YK SGGL Sbjct: 59 GNEINVTINEDESITVADNGRGMPTGTH-RSGKPTVEVIFTVLHAGGKFGQGGYKTSGGL 117 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS L + I R+G I+E F +G + ++ TGT VTF P ++ Sbjct: 118 HGVGASVVNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKKGKTKKTGTTVTFKPDAE 177 Query: 181 IFSV-QDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN++TL RL+E +FL +++I+L D+R + R Y+ GI+AFVSY++ Sbjct: 178 IFKSATSFNFETLSERLQESAFLLQNLKITLEDRRVGKERSEVYHYEEGIKAFVSYVNEG 237 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+ L + QG+ + I +D++ ++ND Y E+++ F NN+ KDGGTH G ++A+TR Sbjct: 238 KEVLHDVAL-FQGTANEIEVDVSFQYNDQYSESIMSFVNNVRTKDGGTHEVGFKTAMTRV 296 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD--PRFSSQTKEKLVSSEVRSVVE 357 Y + K +++ G+D REG T+++S+++P+ +F QTK KL + E RS V+ Sbjct: 297 FNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEHLLQFEGQTKSKLGTPEARSAVD 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARD--LTRRKGVLDIASLPGKLA 415 + V + L +LEE +K +VKK + A R+AAR+AR+ + +K L GKL Sbjct: 357 AIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLT 416 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 ++ +K+EL+LVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR + + ++EI Sbjct: 417 PAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEIN 476 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 T+I +G G+G D F++ Y++IIIMTDAD DGAHI+ LLLTFFF+ M L+ G +Y Sbjct: 477 TIIHTIGAGVGND-FNLKDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVY 535 Query: 536 IIKPPLYGIT----RGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 I PPLY + + K + Y +E LE + G ++ + L Sbjct: 536 IALPPLYKLEKGKGKNKKIAYAWTDEELEKLQREMGKGF-VLQRYKGLGEMNPDQLWE 592 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 + + Q ++ + + S + ++ ++ Sbjct: 378 VKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAG 437 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ ++ I ++ +N Sbjct: 438 GSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNY 497 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLIC---NGDKIKIT 717 + ++ + F F + + R+ + L KI Sbjct: 498 NRIIIMTDADTDGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYA 557 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L+ + KG +QRYKGLGEMN QLWETT+NP+TR+L+RV+I D ++ Sbjct: 558 WTDEELEKLQREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRV 617 Query: 778 SRLMGDEVEPRREFIQEN 795 S LMGD+V PRRE+I+ + Sbjct: 618 STLMGDKVAPRREWIERH 635 >gi|90424324|ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18] gi|90106338|gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18] Length = 685 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 246/654 (37%), Positives = 358/654 (54%), Gaps = 26/654 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 Y A I++L+GL+ V++RP MYIG TD E LHH+ EV+DN++DE+L G+A I V Sbjct: 39 EGDYTAADIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIEV 97 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 TL DG TVSDNGRGIP D H + SA EVIM LH+GGKF+ K Y+ SGGLHGVGV Sbjct: 98 TLAADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGV 157 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184 SVVNALS L++ + R +Y+M+F G+ L G N GT + F P IF Sbjct: 158 SVVNALSCLLEVEVARSQQLYKMTFERGLPMGKLESLGKVHNRRGTTIRFKPDPQIFGPK 217 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDR 238 F L R ++L V+I P E T + GG++ F+ Sbjct: 218 AAFKPQRLFKMARSKAYLFGGVEIRWHCDPELLKGLEGVPAEDTFHFPGGLKDFLGAAIH 277 Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + + + R + + A+ W + + N +P DGGTH +G+RSAL Sbjct: 278 NDTLVHPDIFSGRSGRVGAHGGCEWAVAWTADADGFLSSYCNTVPTPDGGTHEAGMRSAL 337 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 R + + E++ K+ S+ +D G +LS+ + +P F QTK++L ++E + +V Sbjct: 338 LRGLKDHAERAGQGKRA-SSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATAEAQKIV 396 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + D WL +PL+A +++ VL+ + R R+ ++ RK + LPGKLAD Sbjct: 397 EQAIKDPFDHWLSGNPLQANKLLEFVLERADERLRRRQEKE-ISRKTAVKKLRLPGKLAD 455 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 C+ + SELF+VEGDSAGGSAKQGR R+ QAILPLRGKILNV A DK+ ++ ++ Sbjct: 456 CTNTAAEGSELFIVEGDSAGGSAKQGRDRKTQAILPLRGKILNVASATRDKLTANAQLSD 515 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L+ A+G G G + + + LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI G LY+ Sbjct: 516 LMQAIGCGSGAN-YREDDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEGHLYL 574 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY +T G Y +D+ E L ++ + KG+ + + + Sbjct: 575 AVPPLYRLTHGAKTVYARDDAHKEQLLKSEFNANAKVDVGRFKGL--GEMMPAQLKET-- 630 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + K + + ++ + + + + +K R FI+EK+E Sbjct: 631 --------TMDPAKRTLLRVALADIDREGTADSVERLMGTKAEARFAFISEKAE 676 Score = 97.8 bits (242), Expect = 7e-18, Method: Composition-based stats. Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 7/72 (9%) Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQ---ADDLFSRLMGDEVEPRREFIQE 794 R+KGLGEM +QL ETT++P R+LLRV + D + AD + RLMG + E R FI E Sbjct: 615 RFKGLGEMMPAQLKETTMDPAKRTLLRVALADIDREGTADSV-ERLMGTKAEARFAFISE 673 Query: 795 NSLPSA---LDI 803 + ++ LD+ Sbjct: 674 KAEFASEDLLDV 685 >gi|28630989|gb|AAO45882.1| DNA gyrase subunit B [Mesoplasma chauliocola] Length = 560 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 239/567 (42%), Positives = 343/567 (60%), Gaps = 12/567 (2%) Query: 20 GLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDN 79 L+AV+KRP MYIG TD GLHH+++E++DN+IDE+L GY I VTL +GS TV+DN Sbjct: 1 WLEAVRKRPGMYIGSTD-VRGLHHLVWEIVDNSIDEALAGYCTEINVTLEKNGSVTVADN 59 Query: 80 GRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRI 139 GRG+P +H G EVI + LHAGGKF YK SGGLHGVG SVVNALS + I Sbjct: 60 GRGVPIGMHS-TGRPTPEVIFSVLHAGGKFGGSGYKTSGGLHGVGSSVVNALSKKFNVTI 118 Query: 140 KREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRE 198 R+ + E+ F NG N PL G N TGT V FLP IF+ F++ T+ RL+E Sbjct: 119 YRDKKVNEIEFTNGGKLNIPLTEVG-TTNKTGTIVNFLPDDSIFNTTKFSFTTITERLKE 177 Query: 199 LSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNIS 258 + LNS ++I++ DK + + E + G+ FV L + P+ I G I+ Sbjct: 178 SALLNSGLRITITDKINDKFVEYQF--ENGLVEFVKELSSEFT-QITEPVVITGESKRIA 234 Query: 259 IDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVI 318 ++ +++ + ++E +L F NN+ DGGTH++G ++ L R I Y + + K + Sbjct: 235 SEICIQYTEDFNETILGFANNVKTGDGGTHITGFKTGLVRAINDYAKNNKILKDKDPRLD 294 Query: 319 GDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAK 376 +D REG +++++K+P+ + QTK KL + + + VE D ++ WL E+ + A Sbjct: 295 SNDLREGLVAIVTVKIPEDLIEYEGQTKGKLGTPDAKIAVEQVTYDFMNFWLIENKVPAT 354 Query: 377 IIVKKVLDASMVRDAARRARDLTR-RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSA 435 I++K + A R+ AR+AR R KG ++ GKL R + +EL+LVEGDSA Sbjct: 355 KIIEKAMLARKAREEARKARQAIRDSKGKKTTRAMLGKLTPAQGRKKEINELYLVEGDSA 414 Query: 436 GGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKL 495 GGSAK GR R QAILPLRGK++N E+A+ +++ ++EI T+ITA+G GIG FD+N + Sbjct: 415 GGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAIGAGIG-QDFDVNDI 473 Query: 496 RYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITR-GKSLQYVK 554 Y K+IIMTDAD DGAHI+TLLLTFF+R M LI N ++I PPLY +T + Y+ Sbjct: 474 NYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLYKLTFADRKFIYLW 533 Query: 555 DEESLEDYLINQSLSEEIELFCDSKGV 581 DEE L D+ + EI+ + + Sbjct: 534 DEEELADFAKTATKKYEIQRYKGLGEM 560 Score = 47.3 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 3/160 (1%) Query: 589 NFIDDALKIDKLIKDFYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFI 645 I++ ++ + QA++ V N E + + ++ + I Sbjct: 401 KEINELYLVEGDSAGGSAKSGRDRTFQAILPLRGKVINSEKAKLAELMKNEEIQTIITAI 460 Query: 646 AEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTIL 705 + + + N ++ + F + I + + + Sbjct: 461 GAGIGQDFDVNDINYGKVIIMTDADTDGAHIQTLLLTFFYRYMKDLIINKHVFIALPPLY 520 Query: 706 SLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEM 745 L K L K +QRYKGLGEM Sbjct: 521 KLTFADRKFIYLWDEEELADFAKTATKKYEIQRYKGLGEM 560 >gi|213690934|ref|YP_002321520.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522395|gb|ACJ51142.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 709 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 43 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 101 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 102 HIEVSILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 161 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 162 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 221 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 222 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 281 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 282 QYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 341 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 342 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 401 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 402 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 461 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 462 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 521 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 522 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 580 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 581 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 640 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 641 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 691 Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 622 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 681 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 682 FSMLMGDEVEPRRLFIQRNAKNV 704 >gi|268610497|ref|ZP_06144224.1| DNA gyrase subunit B [Ruminococcus flavefaciens FD-1] Length = 643 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 277/596 (46%), Positives = 380/596 (63%), Gaps = 12/596 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 MS N++YD + IQ+L+GL+AV+KRP MYIG T GLHH++YE++DN+IDE+L GY Sbjct: 1 MSQQ-NNNNYDENDIQVLEGLEAVRKRPGMYIGSTGPG-GLHHLVYEIVDNSIDEALAGY 58 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 I V + VSDNGRGIP +H +EGISAA V+ T LHAGGKF YKVSGGL Sbjct: 59 CTEINVEILEGDVIRVSDNGRGIPVGIHPKEGISAATVVYTILHAGGKFGGGGYKVSGGL 118 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS WL+L +K +IY F G D L + G +TGT V F + Sbjct: 119 HGVGASVVNALSEWLELTVKDGEHIYFQRFERGHYDEQLKIIGDTT-ETGTSVMFKADGE 177 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPRE-ITMFYKGGIEAFVSYLD-- 237 IF ++Y+ L RLRE +FLN+ ++I DKR + T+ Y+GGI FV ++ Sbjct: 178 IFEHTVYDYEILLKRLREQAFLNAGIKIVFTDKRDKDNIVGETLHYEGGIREFVDHIHAT 237 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 R + L I + G++ + ++AM++ND Y+E +L F NNI KDGG+H +G ++ALT Sbjct: 238 RGLESLSGEVIYVSGTQGDSFAEIAMQYNDSYNEVILSFANNIHTKDGGSHETGFKNALT 297 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + I Y K K+ + + G+D REG T+++S+K+ + F QTK +L + EV+ VE Sbjct: 298 KVINEYGSKMGKLKEGE-KLKGEDVREGLTAIISVKLTECEFEGQTKGRLGNPEVKPFVE 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V + L +LEE+P A II K + A R+AA+RAR+ R+K A++P KLADC Sbjct: 357 KLVTEKLMNFLEENPETANIIFDKCMSALRAREAAKRAREAERKKNAFGNAAMPEKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 SERD + +E+++VEGDSAGGSAKQGR R QAIL L GK+LNVE+AR D++ + ++ + Sbjct: 417 SERDNRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYGNDKLAPV 476 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 +TALGTG+G+D FDI KLRY K+IIM DADVDG HIRTLLLTFFFR M LI NG +YI Sbjct: 477 VTALGTGLGED-FDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGNVYIA 535 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC----DSKGVISKNDLRN 589 +PPL+ + R K ++Y +E + Y+ S + + G + L Sbjct: 536 QPPLFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWE 591 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 29/225 (12%) Query: 606 PNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVK 665 + + +I + +G + ++ + LN + ++ + + +V Sbjct: 421 NRYTEIYIVEGDSAGGSAKQGRDRRYQAILALWGKMLNVEKARVDRIYG--NDKLAPVVT 478 Query: 666 RIARGVQEQFVLE--------------------GSSIFSFGSKYKRIFSNRIEENYLTIL 705 + G+ E F +E + + +F +Y R Sbjct: 479 ALGTGLGEDFDIEKLRYGKVIIMADADVDGMHIRTLLLTFFFRYMRPLITNGNVYIAQPP 538 Query: 706 SLICNGDKIKITGPCSL-----LDTIFSIGR-KGISMQRYKGLGEMNASQLWETTLNPDT 759 K + + G+ K +++QRYKGLGEM+ QLWETT++P+ Sbjct: 539 LFRVERKKQVRYAFSDEERDQYIAELSEDGKYKDVAVQRYKGLGEMDPEQLWETTMDPEH 598 Query: 760 RSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 R+++++ + DA +AD++F+ LMGD+VEPRR FI++N+ + LD+ Sbjct: 599 RTIVKISMEDALKADEIFTILMGDKVEPRRLFIEKNAKFAQNLDV 643 >gi|223984216|ref|ZP_03634364.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM 12042] gi|223963831|gb|EEF68195.1| hypothetical protein HOLDEFILI_01657 [Holdemania filiformis DSM 12042] Length = 638 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 256/595 (43%), Positives = 367/595 (61%), Gaps = 18/595 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M+ + YD +SIQIL+GL+AV+KRP MYIG TD GLHH+++E +DNAIDE+L G+ Sbjct: 1 MAKTQK---YDENSIQILEGLEAVRKRPGMYIGSTDS-RGLHHLVWETVDNAIDEALNGF 56 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQK-SYKVSGG 119 IT+TL +G+ V D GRG+P +H G+ +VI T LHAGGKF+ + YK SGG Sbjct: 57 GKKITITLEKNGAVCVEDEGRGMPIGMHAS-GVPTIQVIFTVLHAGGKFSSEGGYKTSGG 115 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPS 178 LHGVG SVVNALS W+++ + +EG + M F + G L G + TG+++ F+P Sbjct: 116 LHGVGASVVNALSEWVEVTVCQEGQMVSMRFEDGGKKVGKLEKLGKST-KTGSKIRFMPD 174 Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238 IFS +FN + R RE +FL ++ + + D+RS + T Y+ G++AF+ YL Sbjct: 175 KRIFSTIEFNAGLICERARENAFLLKNITMVVKDERSGKT--ETFHYEDGLKAFLEYLHE 232 Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298 + L + G ++I + A ++ D Y E+++ F N + KDGGTH G R+A T+ Sbjct: 233 DRTVLHDPVV-FTGMANDIEVQCAFQYTDDYQESMVSFVNLVRTKDGGTHEMGFRTAFTK 291 Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVV 356 Y K K+ ++ G D REG TS++S+ +P+ +F QTK KL ++E +S V Sbjct: 292 AFNDYARKLGLLKEKDKNFEGSDVREGLTSIVSVSIPENLLQFEGQTKGKLGTAEAKSAV 351 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKL 414 ES V D LS +LEE+ + +++KK+ AS R+AAR+AR+ R +K L GKL Sbjct: 352 ESLVGDKLSFYLEENKELSTMLIKKMQKASQAREAARKAREEARKGKKAGKSEKVLSGKL 411 Query: 415 ADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEI 474 A +D + ELFLVEGDSAGGSAKQGR + QAILPLRGK+LN E+A ++ ++E+ Sbjct: 412 APAQSKDASRKELFLVEGDSAGGSAKQGRDSKYQAILPLRGKVLNTEKAGLSEIEKNEEL 471 Query: 475 GTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFL 534 T++ ALG GIG FD + Y+KIIIMTDAD DGAHI+ LLLTFF+R M LI +G + Sbjct: 472 NTIVHALGAGIGSG-FDYSDSNYNKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIEHGMV 530 Query: 535 YIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 YI PPLY +T+GK L+Y +E L++ + Q + G ++ + L Sbjct: 531 YIALPPLYKVTKGKQLRYAYTDEELDE--VKQQWGKVEIQRYKGLGEMNASQLWE 583 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 6/255 (2%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + + E ++ E L SK+ R + Sbjct: 376 KMQKASQAREAARKAREEARKGKKAGKSEKVLSGKLAPAQSKDASRKELFLVEGDSAGGS 435 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 K + V N E + +L ++ + + S +N + Sbjct: 436 AKQGRDSKYQAILPLRGKVLNTEKAGLSEIEKNEELNTIVHALGAGIGSGFDYSDSNYNK 495 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKR-IFSNRIEENYLTILSLICNGDKIKITGPCS 721 ++ + + +F +Y R + + + L L + G +++ Sbjct: 496 IIIMTDADTDGAHI--QVLLLTFFYRYMRPLIEHGMVYIALPPLYKVTKGKQLRYAYTDE 553 Query: 722 LLDTIFSI-GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRL 780 LD + G+ + +QRYKGLGEMNASQLWETT++P++R+L++V I DA QA+ S L Sbjct: 554 ELDEVKQQWGK--VEIQRYKGLGEMNASQLWETTMDPESRTLIQVSIEDAVQAERNVSIL 611 Query: 781 MGDEVEPRREFIQEN 795 MGD+ RR +I++N Sbjct: 612 MGDKANLRRTWIEQN 626 >gi|229824236|ref|ZP_04450305.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271] gi|229786590|gb|EEP22704.1| hypothetical protein GCWU000282_01540 [Catonella morbi ATCC 51271] Length = 708 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 253/678 (37%), Positives = 392/678 (57%), Gaps = 28/678 (4%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y D+IQIL+GL+AV+KRP MYIG TD + GLHH++YE++DNA+DE+L G+AD I VT Sbjct: 22 TNYGDDAIQILEGLEAVRKRPGMYIGSTD-QRGLHHLLYEIVDNAVDEALSGFADHIKVT 80 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 + DGS V DNGRG+P LH G EV+ T LHAGGKF Q YK +GGLHGVG SV Sbjct: 81 ICQDGSVKVQDNGRGLPVGLHAS-GKPTIEVVFTVLHAGGKFGQGGYKSAGGLHGVGASV 139 Query: 128 VNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSA-GNDTGTEVTFLPSSDIFSVQ 185 VNALS+W+++ + R+G Y+M F N G+ L+ T ++ + GT V F+P S IF Sbjct: 140 VNALSTWVQVEVDRDGYTYQMRFENGGVPVTKLIKTKNSNKSKHGTTVHFMPDSKIFGHA 199 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 N +T+ RLRE +FL + I LID+R + G+ F++ +K + Sbjct: 200 TINSETIAERLRESAFLLKDLTIELIDERID--YHEVFHFSQGLIDFIT-YLNEEKDTLG 256 Query: 246 SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVE 305 G + ID A ++NDGY E +L F NN+ GGTH G+++ +T+ Y Sbjct: 257 DIAGFAGEVEGFEIDFAFQYNDGYSETILSFANNVRTGGGGTHEVGMKTGMTKAFNDYAR 316 Query: 306 KSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDG 363 K K +++ G D REG T+V+S+++P+ +F QTKEKL + + R +VE+FVN+ Sbjct: 317 KVGLLKDKDKNLEGSDVREGLTAVISLRIPEEYLQFEGQTKEKLGTPKARPLVENFVNEK 376 Query: 364 LSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR--RKGVLDIASLPGKLADCSERD 421 ++A+L E+ +++I++K + A R+AAR+ARD R K ++ GKL +D Sbjct: 377 MTAYLNENGNFSQMILRKAIKARETREAARKARDAARSGSKKQAQERAISGKLTKAQSKD 436 Query: 422 PKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITAL 481 K+EL+LVEGDSAGGSAK GR+R+ QAILPLRGK++N E+A +L ++EI T+I + Sbjct: 437 ASKNELYLVEGDSAGGSAKLGRNRQYQAILPLRGKVINTEKASMQDILKNEEINTMIYTI 496 Query: 482 GTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL 541 G G+G D FD+ + Y+K+IIMTDAD DGAHI+ LLLTFF+R M L+ G +Y+ PPL Sbjct: 497 GAGVGAD-FDLESVNYNKVIIMTDADTDGAHIQVLLLTFFYRYMKPLLEAGKVYLAMPPL 555 Query: 542 YGITRGKSLQYVKDEESLEDYLINQSLSEE---IELFCDSKGVISKNDLRN--------- 589 + +++G + V + ++ L ++ + G ++ + L + Sbjct: 556 FKVSKGAGKKQVVEYAWTDEELASKIAKVGKGYVLQRYKGLGEMNADQLWDTTMNPETRL 615 Query: 590 ----FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI 645 IDD + ++ + N + + F +++ + + ++ + Sbjct: 616 LIRVTIDDGARAERRLTTLMGNKVEPRRKWIERHVSFTLDTEDSLLEMSQGQESSHAHHE 675 Query: 646 AEKSEKSWHGSINNSDIL 663 + ++ +++ Sbjct: 676 SLVKQQEGRQEAQEPELI 693 Score = 142 bits (357), Expect = 4e-31, Method: Composition-based stats. Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 7/121 (5%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKIT----GPCSLLDTIFSIGRKGI 734 + +F +Y + + ++ + + K ++ L I +G KG Sbjct: 530 LLLTFFYRYMKPLLEAGKVYLAMPPLFKVSKGAGKKQVVEYAWTDEELASKIAKVG-KGY 588 Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 +QRYKGLGEMNA QLW+TT+NP+TR L+RV I D ++A+ + LMG++VEPRR++I+ Sbjct: 589 VLQRYKGLGEMNADQLWDTTMNPETRLLIRVTIDDGARAERRLTTLMGNKVEPRRKWIER 648 Query: 795 N 795 + Sbjct: 649 H 649 >gi|322690198|ref|YP_004219768.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM 1217] gi|320455054|dbj|BAJ65676.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM 1217] Length = 696 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 375/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 30 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I +T+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 89 HIEITILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + + I + + IS +LAM+W Y E V F N Sbjct: 269 QYLNGIKDYVDYLVKVRKAMPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 448 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 449 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691 >gi|94984653|ref|YP_604017.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM 11300] gi|94554934|gb|ABF44848.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus geothermalis DSM 11300] Length = 711 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 272/608 (44%), Positives = 383/608 (62%), Gaps = 21/608 (3%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYI-GDTDGESGLHHMIYEVLDNAIDESLEG 59 M+ + Y ADSI ILKGL+AV+KRP MY+ G T G G H ++ E++DNAIDE L G Sbjct: 55 MTQALPQDHYTADSISILKGLEAVRKRPGMYVQGGT-GIDGYHQLLTEIIDNAIDEGLAG 113 Query: 60 YADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGG 119 +A + V ++ DGS TV+DNGRGIP D+ K EG A EVI T LHAGGKF +YKVSGG Sbjct: 114 FATEVHVIMHADGSATVTDNGRGIPVDIMKSEGRPAIEVIFTELHAGGKFGGGAYKVSGG 173 Query: 120 LHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGN--DTGTEVTFLP 177 LHGVG SVVNALS++L + + ++GN++ + F G + PL V G T+VTF P Sbjct: 174 LHGVGSSVVNALSTYLDVTVNKDGNLHHIRFERGTVTTPLEVLGPTPQDVRWATKVTFHP 233 Query: 178 SSDIFSVQD--FNYDTLQHRLRELSFLNSSVQISLIDK----RSPEPREITMFYKGGIEA 231 +FS + FNYD ++ RLREL++L + ++I + D+ E RE T +GGI Sbjct: 234 DPTVFSEFENLFNYDRIRGRLRELAYL-TGLKIVVRDERVGLHGGEIREETFHEQGGIAN 292 Query: 232 F-VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGY-HENVLCFTNNIPQKDGGTHL 289 F + + K L PI ++G+ ++ +++A + Y +N+L + N I +DGGT L Sbjct: 293 FARALVTDDSKLLYDQPIVMRGTHSDVEVEVAFIHANTYASDNILTYANMIRTRDGGTPL 352 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 +G ++A TR + Y + K GDD EG V+S+K+P+P+F SQ K KL++ Sbjct: 353 TGFKTAYTRILNKYAKDKNLIKSGNPVPTGDDLLEGIYCVVSVKLPEPQFESQAKVKLLN 412 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 SE ++ V + V + + +LEE+P + IV+K +A+ R+AAR+ARD+ RR L+ Sbjct: 413 SEAQTAVNAIVGEKFTEFLEENPKIGRTIVEKAAEAARAREAARKARDIVRRSNPLENDD 472 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKLADC+ +DP +SELF+VEGDSAGGSAK GR R QAILPLRGKILNVE++ +K+L Sbjct: 473 LPGKLADCTSQDPAESELFIVEGDSAGGSAKMGRERRYQAILPLRGKILNVEKSDLNKIL 532 Query: 470 SSQEIGTLITALGTGIG----QDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQM 525 + EI +I A+G G+ + FD++ LRYHKIIIMTDAD+DG HI TLLLTFF+R M Sbjct: 533 KNAEIRAMIGAIGAGVEGTGDRMHFDLSNLRYHKIIIMTDADMDGGHITTLLLTFFYRYM 592 Query: 526 PSLIHNGFLYIIKPPLYGIT--RGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGV 581 +I G+LYI +PPLY I R K Y+ EE L++++ + + G Sbjct: 593 RPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKEGKKYEIQRFKGLGE 652 Query: 582 ISKNDLRN 589 ++ L + Sbjct: 653 MNAEQLWD 660 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 675 FVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDK--IKITGPCSLLDTI---FSI 729 + F + I + + + ++ +K + L + + Sbjct: 579 HITTLLLTFFYRYMRPIIEAGYLYIAQPPLYRIMVGREKKGTYLYTEEELKEHVARATKE 638 Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRR 789 G+K +QR+KGLGEMNA QLW+TT+NP+TR+L RV++ D A+++F LMG+EV PR+ Sbjct: 639 GKK-YEIQRFKGLGEMNAEQLWDTTMNPETRALKRVQVEDLIIANEVFEDLMGNEVGPRK 697 Query: 790 EFIQENSLPSALDI 803 FIQEN+ + + I Sbjct: 698 RFIQENARFAEISI 711 >gi|154248675|ref|YP_001419633.1| DNA topoisomerase IV subunit B [Xanthobacter autotrophicus Py2] gi|154162760|gb|ABS69976.1| DNA topoisomerase IV, B subunit [Xanthobacter autotrophicus Py2] Length = 678 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 234/628 (37%), Positives = 343/628 (54%), Gaps = 21/628 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 ++ Y A I++L+GL+ V++RP MYIG TD LHH+ EV+DN +DE++ G+A I V Sbjct: 32 DADYTAAHIEVLEGLEPVRRRPGMYIGGTDS-KALHHLFAEVIDNCMDEAVAGHATFIEV 90 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 + DG TVSDNGRGIP + H + G SA EVIMT LHAGGKF+ K Y+ SGGLHGVG+ Sbjct: 91 QMAADGYLTVSDNGRGIPVEEHPKFPGKSALEVIMTTLHAGGKFDSKVYETSGGLHGVGI 150 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SV 184 SVVNALS L++ + R +Y SF G+ L G N GT V F P +IF Sbjct: 151 SVVNALSDDLEVEVTRNQTLYRQSFSKGVPQGKLKEVGRITNRRGTRVRFHPDPEIFGPS 210 Query: 185 QDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDR 238 F + R ++L V+I P + + + GG+ +++ Sbjct: 211 ARFEPARVFRMARSKAYLFGGVEIRWSCDPELLKGIEGVPEKTSFRFPGGLRDYLAADLE 270 Query: 239 HKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296 + + + + + S++ A+ W ++ + N IP DGGTH +GLR+ L Sbjct: 271 GQTLVHSDIFSGRIQKPGGHGSVEWAVAWVADADGSISSYCNTIPTPDGGTHENGLRAVL 330 Query: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356 + + + E+S K + GDD G ++LS+ + +P F QTK++L ++E +V Sbjct: 331 LKGLKDHAERSGQ-GKRGSVITGDDVTTGCAAMLSVFVREPEFQGQTKDRLATAEAARIV 389 Query: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416 E + D WL +P++A +++ V+D + R ++ ++ RK + LPGKLAD Sbjct: 390 EQGLRDPFDHWLAANPVQASRLLEHVIDRAEERLRRKQEKE-VSRKTAVRKLRLPGKLAD 448 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 CS + SE+F+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV A DK+ +Q++ Sbjct: 449 CSNTEAAGSEIFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASATRDKLAQNQQLAD 508 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 L ALG G+ + LRY K+IIMTDADVDGAHI +LL+TFFFRQMP LI +G L++ Sbjct: 509 LGQALGCGM-LSHYRDADLRYEKVIIMTDADVDGAHIASLLVTFFFRQMPKLIEDGHLFL 567 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY IT+G Y +D+ E L + + KG+ + + Sbjct: 568 AVPPLYRITQGAKTLYARDDAHKEKLLKKEFTGKGKVEVGRFKGL--GEMMPAQLK---- 621 Query: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNC 624 + + + IE A + + Sbjct: 622 -ETTMDPRTRTLQRVTIEDAEQAATTDL 648 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 5/79 (6%) Query: 730 GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQAD--DLFSRLMGDEVEP 787 G+ + + R+KGLGEM +QL ETT++P TR+L RV I DA QA DL RLMG+ E Sbjct: 600 GKGKVEVGRFKGLGEMMPAQLKETTMDPRTRTLQRVTIEDAEQAATTDLVERLMGNRPEA 659 Query: 788 RREFIQENSL---PSALDI 803 R FI E + + LDI Sbjct: 660 RFAFISERAAFAGEALLDI 678 >gi|1708089|sp|P50074|GYRBR_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-resistant gi|581742|emb|CAA78951.1| gyrase B (novobiocin-resistant) [Streptomyces caeruleus] Length = 677 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 271/643 (42%), Positives = 389/643 (60%), Gaps = 22/643 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 +SYDA++I +L GLDAV+KRP MYIG T GE GLHH++ E++DN++DE+L G AD I V Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGST-GERGLHHLVQELVDNSVDEALAGVADRIDV 81 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 T+ DG V DNGRGIP +H E A EV++T LHAGGKF Y VSGGLHGVG+S Sbjct: 82 TVLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLS 141 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS+ L I +G+ + + +G PL A + TGT +TF DIF + Sbjct: 142 VVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLAR-HEATSRTGTSLTFWADGDIFETTE 200 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKR--------------SPEPREITMFYKGGIEAF 232 ++++TL R +E++FLN + ++L D+R P + ++ Y GGI F Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 233 VSY-LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 V + R +P S I I +S ++A++WN Y ++V + N I +GGTH Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTHE 320 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G R+ALT + Y + + ++ G+D REG T+++S+ + +P+F QTK KL + Sbjct: 321 EGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGN 380 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 +EVR++++ V++ L+ W + +P EA IV+K + A+ R AAR+ARDLTRRKG+L+ A+ Sbjct: 381 TEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAA 440 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL+DC DP SE+F+VEGDSAGGSAK GR+ + QAILP+RGKILNVE+AR DK+L Sbjct: 441 LPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVL 500 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 +QE LI+A GTG+ +D FDI KLRYHKII+M DADVDG HI TLLLTF FR M L+ Sbjct: 501 QNQENQALISAFGTGVHED-FDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 G +++ +PPLY I + + + L+ + + + DS L Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKG--LGE 617 Query: 590 FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINV 632 + L++ + D T + A +F+ +++ Sbjct: 618 MNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEA 660 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 S+QR+KGLGEMNA +L TT++PD R L +V + DA+ ADDLFS LMG++VE RR FIQ Sbjct: 608 SIQRFKGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQR 667 Query: 795 NSLPSA-LDI 803 N+ LDI Sbjct: 668 NAQDVRFLDI 677 >gi|256619114|ref|ZP_05475960.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200] gi|256959030|ref|ZP_05563201.1| gram positive topoisomerase IV [Enterococcus faecalis DS5] gi|256961877|ref|ZP_05566048.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96] gi|256965075|ref|ZP_05569246.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704] gi|257079061|ref|ZP_05573422.1| gram positive topoisomerase IV [Enterococcus faecalis JH1] gi|257089935|ref|ZP_05584296.1| topoisomerase IV subunit B [Enterococcus faecalis CH188] gi|257416144|ref|ZP_05593138.1| gram positive topoisomerase IV [Enterococcus faecalis AR01/DG] gi|257419346|ref|ZP_05596340.1| topoisomerase IV [Enterococcus faecalis T11] gi|256598641|gb|EEU17817.1| gram positive topoisomerase IV [Enterococcus faecalis ATCC 4200] gi|256949526|gb|EEU66158.1| gram positive topoisomerase IV [Enterococcus faecalis DS5] gi|256952373|gb|EEU69005.1| gram positive topoisomerase IV [Enterococcus faecalis Merz96] gi|256955571|gb|EEU72203.1| gram positive topoisomerase IV [Enterococcus faecalis HIP11704] gi|256987091|gb|EEU74393.1| gram positive topoisomerase IV [Enterococcus faecalis JH1] gi|256998747|gb|EEU85267.1| topoisomerase IV subunit B [Enterococcus faecalis CH188] gi|257157972|gb|EEU87932.1| gram positive topoisomerase IV [Enterococcus faecalis ARO1/DG] gi|257161174|gb|EEU91134.1| topoisomerase IV [Enterococcus faecalis T11] Length = 663 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%) Query: 25 KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84 +KRP MYIG TD GLHH++YE++DNA+DE+L GY + I VT+ D S V+D+GRG+P Sbjct: 2 RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60 Query: 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144 T +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL++ I R+G Sbjct: 61 TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203 Y F + G L G GT VTFLP IFS +F+Y+ L RLRE +FL Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179 Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263 V+I+L D+R EP+E Y+ GI+ FV+YL+ K L + G+++ I ++LA Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238 Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 ++NDGY ENVL F NN+ KDGGTH G+++++T+ Y K K+ +++ G D R Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298 Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 EG +VLSI++P+ +F QTK KL + R+VV++ V + + +L+E+ ++ +++K Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358 Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEGDSAGGSA Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499 KQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Y K Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477 Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559 IIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G + V Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532 Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 +Y E+ ++ + ++ + + + I+ A + Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591 Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + + F E+ S + Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 596 TTLMGDKVEPRRKWIEQH 613 >gi|229817001|ref|ZP_04447283.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM 20098] gi|229785746|gb|EEP21860.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM 20098] Length = 717 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 256/638 (40%), Positives = 366/638 (57%), Gaps = 26/638 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 51 ESMTPEHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 109 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D+ EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 110 HIEVTILPDNGIRVVDDGRGIPVDIVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 169 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++ + PL + TGT VTF Sbjct: 170 VGISVVNALSTRVDIEVRRQGFHWTQTYKDQHPTAPLAQGQPMTDDESTGTSVTFWADPA 229 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITM 223 IF ++++TL+ R ++++FLN ++I+L D R + + T Sbjct: 230 IFETTTYDFETLRSRFQQMAFLNKGLKITLTDLRQLDEAGDEVAGDGDNAAEELHQTATY 289 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + I + IS ++AM W Y E+V F N Sbjct: 290 QYVNGIKDYVDYLVKSRKAVPVEDEVINFDAEDLKLGISAEIAMEWTTAYSESVHTFANT 349 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y + K ++ GDD REG T+V+S+K+ +P+F Sbjct: 350 ISTTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQF 409 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK +++K ++AS R AA++AR+ T Sbjct: 410 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNVIQKAIEASRARLAAKKARENT 469 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 470 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 529 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDINK+RYHK+IIM DADVDGAHI TL LT Sbjct: 530 TERASLDRMMKSDTIESLITAVGGGYGED-FDINKVRYHKVIIMADADVDGAHIATLNLT 588 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + Sbjct: 589 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAKGRQLPKGEG 648 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 ++ + E A Sbjct: 649 IQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAEAA 686 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V+I DA AD+ Sbjct: 630 DRVLAEGKAKGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAEAADET 689 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 690 FSMLMGDEVEPRRLFIQRNARNV 712 >gi|257082500|ref|ZP_05576861.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol] gi|257086693|ref|ZP_05581054.1| gram positive topoisomerase IV [Enterococcus faecalis D6] gi|256990530|gb|EEU77832.1| DNA topoisomerase IV subunit B [Enterococcus faecalis E1Sol] gi|256994723|gb|EEU82025.1| gram positive topoisomerase IV [Enterococcus faecalis D6] Length = 663 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%) Query: 25 KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84 +KRP MYIG TD GLHH++YE++DNA+DE+L GY + I VT+ D S V+D+GRG+P Sbjct: 2 RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60 Query: 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144 T +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL++ I R+G Sbjct: 61 TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203 Y F + G L G GT VTFLP IFS +F+Y+ L RLRE +FL Sbjct: 120 EYMERFEDGGKPVGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179 Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263 V+I+L D+R EP+E Y+ GI+ FV+YL+ K L + G+++ I ++LA Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238 Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 ++NDGY ENVL F NN+ KDGGTH G+++++T+ Y K K+ +++ G D R Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298 Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 EG +VLSI++P+ +F QTK KL + R+VV++ V + + +L+E+ ++ +++K Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358 Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEGDSAGGSA Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499 KQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Y K Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477 Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559 IIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G + V Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532 Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 +Y E+ ++ + ++ + + + I+ A + Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591 Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + + F E+ S + Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 596 TTLMGDKVEPRRKWIEQH 613 >gi|301633042|ref|XP_002945587.1| PREDICTED: DNA gyrase subunit B-like, partial [Xenopus (Silurana) tropicalis] Length = 506 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 246/500 (49%), Positives = 323/500 (64%), Gaps = 10/500 (2%) Query: 41 LHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIM 100 LHH++YEV+DN+IDE+L GY D I V +N D S TV DNGRGIP D H++E SA EV+M Sbjct: 8 LHHLVYEVVDNSIDEALAGYCDHIEVAINEDNSITVQDNGRGIPVDYHEKEQKSALEVVM 67 Query: 101 TRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV 160 T LHAGGKF++ SYKVSGGLHGVGVS VNALS + ++ R G IY+ + G + Sbjct: 68 TVLHAGGKFDKGSYKVSGGLHGVGVSCVNALSKHMTTQVFRNGKIYQQEYECGHPLYSVK 127 Query: 161 VTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE--- 217 G + TGT F P IF+ ++YD L R+REL+FLN+ + ISL D R + Sbjct: 128 EVG-TSDITGTRQQFWPDDTIFTETVYSYDILATRMRELAFLNAGINISLTDLRQKDEEG 186 Query: 218 -PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCF 276 R G++ FV Y+D + M I I + +++A+ +N Y EN+ + Sbjct: 187 NYRTELFHSDEGLKEFVRYVDSSRDHFMNDVIYINTEKQGTPVEVAIMYNTSYSENIHSY 246 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 NNI +GGTHL+G R ALTR + Y E + +K K + GDD REG T+V+SIK+ + Sbjct: 247 VNNINTIEGGTHLAGFRRALTRTLKKYAEDNKMLEKAKVEIAGDDFREGLTAVISIKVAE 306 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+F QTK KL ++EV V+ V + L+ +LEEHP EAK+IV KV+ A+ R AAR+AR Sbjct: 307 PQFEGQTKTKLGNNEVSGAVDQAVGEALTNYLEEHPKEAKLIVDKVILAAQARVAARKAR 366 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 + +RK + +PGKLADCS +DP+ ELFLVEGDSAGGSAKQGR+R QAILPLRGK Sbjct: 367 ESVQRKSPMSGGGMPGKLADCSSKDPEICELFLVEGDSAGGSAKQGRNRSFQAILPLRGK 426 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIG-----QDSFDINKLRYHKIIIMTDADVDGA 511 ILNVE+A + K S E+ +I ALG G +I+KLRY K+IIMTDADVDG+ Sbjct: 427 ILNVEKAMWHKAFESDEVNNIIQALGIRFGVDNEDSKEANIDKLRYKKVIIMTDADVDGS 486 Query: 512 HIRTLLLTFFFRQMPSLIHN 531 HI TL++T FFR P +I Sbjct: 487 HIDTLIMTLFFRYFPQVIQQ 506 >gi|255073667|ref|XP_002500508.1| predicted protein [Micromonas sp. RCC299] gi|226515771|gb|ACO61766.1| predicted protein [Micromonas sp. RCC299] Length = 703 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 261/602 (43%), Positives = 358/602 (59%), Gaps = 21/602 (3%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 + +Y A SIQ+LKGL+ V+KRP MYIG+T GLHHM++EVLDN +DE G+A +ITV Sbjct: 52 SDAYGASSIQVLKGLEPVRKRPGMYIGNTS-TKGLHHMVWEVLDNGVDEVQAGHASLITV 110 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKS--YKVSGGLHGVG 124 T+ DGS V D+GRGIPTD+H G S+ E ++T LHAGGKF Y VSGGLHGVG Sbjct: 111 TVEADGSVAVEDDGRGIPTDVHPATGTSSLETVLTVLHAGGKFGGDESGYHVSGGLHGVG 170 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV----TGSAGNDTGTEVTFLPSSD 180 +SVVNALS ++ + R Y SF G P+ + G GT V F P Sbjct: 171 ISVVNALSDSTEVTVWRGDREYRQSFSRGAALAPMTEGSQDVANVGKKKGTRVRFKPDPS 230 Query: 181 IF-SVQDFNYDTLQHRLRELSFLNSSVQISLI-----DKRSPEPREITMFYKGGIEAFVS 234 IF QDF+ + + R++EL+FLNS+ K++ E E + + GG++ +V Sbjct: 231 IFKERQDFDPNIILARMKELAFLNSTATDEASMDEGDVKKTEEYYEEVLSFPGGLKDYVV 290 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISIDLAMRW-NDGYHENVLCFTNNIPQKDGGTHLSGLR 293 L+ +PL PI + D + ++ A++W + Y + +L + N+I DGGTHL GL+ Sbjct: 291 DLNEGAEPLH-EPITFRAEVDGVQVEGALQWTKEAYTDTLLGYANSIRTSDGGTHLDGLK 349 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +LTR + + K+ K+ ++ G+ REG ++V+++ +P P F QTK +L + EVR Sbjct: 350 QSLTRAVNTQARKAKLLKEADANLGGEHIREGLSAVIAVWVPQPEFEGQTKTRLGNPEVR 409 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 VVES + + +S LE +P I K A +AA+RAR+L RRK VL SLPGK Sbjct: 410 KVVESVIGEQVSEHLEFYPNTLGSIFSKASQAQKAAEAAKRARELVRRKSVLRSGSLPGK 469 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L+DCS DP+ +E+FLVEGDSAGGSAKQGR R QA+LPLRGKILNVER M + E Sbjct: 470 LSDCSVSDPESTEIFLVEGDSAGGSAKQGRDRRFQAVLPLRGKILNVERKDEASMYKNTE 529 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I +++TALG G+ + FD ++LRY KI+I+TDADVDGAHIRTLLLTF FR L G Sbjct: 530 ISSMVTALGLGLKGEPFDESQLRYSKIVILTDADVDGAHIRTLLLTFLFRYQRGLFEQGK 589 Query: 534 LYIIKPPLYGIT-----RGKSLQYVKDEESLEDYLINQSLSEE-IELFCDSKGVISKNDL 587 +Y+ PPLY + + Y DE L+ +L G + L Sbjct: 590 VYVAVPPLYKVESGRAGKNNPPTYCYDEAQLQAHLATLPEGASRSIQRFKGLGEMMPEQL 649 Query: 588 RN 589 + Sbjct: 650 WS 651 Score = 131 bits (330), Expect = 5e-28, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 115/328 (35%), Gaps = 40/328 (12%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLED 561 DA++ G HIR L +P G P + + + V + Sbjct: 369 ADANLGGEHIREGLSAVIAVWVPQPEFEGQTKTRLGNPEVRKVVESVIGEQVSEHLEFYP 428 Query: 562 YLINQSLSEEIELFCDSKGVISKNDL--RNFIDDALKIDKLIKDFY---PNHDKTFIEQA 616 + S+ + ++ +L R + + + + D P + F+ + Sbjct: 429 NTLGSIFSKASQAQKAAEAAKRARELVRRKSVLRSGSLPGKLSDCSVSDPESTEIFLVEG 488 Query: 617 VISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN------------NSDILV 664 +G + ++ LN + K E S + + + Sbjct: 489 DSAGGSAKQGRDRRFQAVLPLRGKILN-VERKDEASMYKNTEISSMVTALGLGLKGEPFD 547 Query: 665 KRIARGVQEQFVLEGS--------SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI 716 + R + + + + +F +Y+R + + + Sbjct: 548 ESQLRYSKIVILTDADVDGAHIRTLLLTFLFRYQRGLFEQGKVYVAVPPLYKVESGRAGK 607 Query: 717 TGP-----CSL-----LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVK 766 P L T+ + S+QR+KGLGEM QLW TTLNP+TR L R+ Sbjct: 608 NNPPTYCYDEAQLQAHLATLPEGASR--SIQRFKGLGEMMPEQLWSTTLNPETRLLKRLT 665 Query: 767 ITDASQADDLFSRLMGDEVEPRREFIQE 794 + DA+ A+ F LM D+V PRREFI+ Sbjct: 666 VDDAAMANKTFQLLMSDKVAPRREFIET 693 >gi|320456980|dbj|BAJ67601.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 696 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 259/653 (39%), Positives = 373/653 (57%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 30 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 88 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I V++ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 89 HIEVSILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 148 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL + G TGT VTF Sbjct: 149 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQHPTAPLKQGEPMTEGESTGTSVTFWADPK 208 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP-----------------EPREITM 223 IF ++++TL+ R ++++FLN ++ISL D+R + + +T Sbjct: 209 IFETTIYDFETLRSRFQQMAFLNKGLKISLTDERENDQAGDEVAGDAADEPGAKHQTVTY 268 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 269 QYLNGIKDYVEYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 328 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 329 ISTTEGGTHEEGFRAALTSLVNRYARDKGILKDKDENLSGDDVREGLTAVISVKLTNPQF 388 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 389 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENT 448 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 449 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 508 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 509 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 567 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 568 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 627 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 628 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 678 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 609 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 668 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 669 FSMLMGDEVEPRRLFIQRNAKNV 691 >gi|150019136|ref|YP_001311390.1| DNA topoisomerase IV subunit B [Clostridium beijerinckii NCIMB 8052] gi|149905601|gb|ABR36434.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB 8052] Length = 649 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 229/605 (37%), Positives = 345/605 (57%), Gaps = 21/605 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 + ++YD + L+ L+ V+ RP MYIG T G GLHH I+E++DN+IDE GY + Sbjct: 2 ELKNTNAYDVTDLTSLEKLEPVRIRPGMYIGST-GSKGLHHCIWEIIDNSIDEIANGYGN 60 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 +T+TLN D S TV DNGRGIPT +H + S E++ T LH GGKF+ K+YK SGGLHG Sbjct: 61 KVTITLNEDKSVTVLDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFDNKNYKTSGGLHG 120 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGT 171 VG +VVNALS WL++ + + GNIY F G L V G GT Sbjct: 121 VGAAVVNALSEWLEVEVYQNGNIYRQRFEYAFDKELKREMPGTSVGSLKVIGKTDKV-GT 179 Query: 172 EVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEA 231 ++TF P +IFS DF +D + RL+EL+F N +++ LIDKR + + + G+ Sbjct: 180 KITFKPDKEIFSTTDFKFDIIDSRLQELAFQNKGIRLELIDKRKGQEITKEYYSENGLLD 239 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGT 287 F++YL+ K P+ + PI G R + ++ +++ D E + + NNIP + GT Sbjct: 240 FINYLNESKTPIHEEPIIFDGERTVGELQLYGEVCIQFTDSTTEYIASYVNNIPTTEAGT 299 Query: 288 HLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKL 347 H +G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK KL Sbjct: 300 HETGFKTGMTRSFKEWSKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKL 359 Query: 348 VSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDI 407 ++E +++ V S W+E++ A I+ L+A+ RD ++ + ++K Sbjct: 360 GNNEAYTMMNDLVYTKFSEWIEDNKTLATSIINNALEAAKRRDKIKKINEAEKKKIGKGT 419 Query: 408 ASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDK 467 A L GK+A C+ +D +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + + Sbjct: 420 APLAGKVAVCTLKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLEN 479 Query: 468 MLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPS 527 +L+S+E+ TA+GTG D++ L+Y KIIIM+DADVDG HIRTL +T+ +R M Sbjct: 480 VLASEELKIFNTAVGTGT-LDNYREEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRP 538 Query: 528 LIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY---LINQSLSEEIELFCDSKGVISK 584 LI NG LY+ +PPLY + R + + +D Q + G ++ Sbjct: 539 LIANGHLYLAQPPLYKVYRETKGKTIVKYAYSDDELENTKKQVGKGALIQRYKGLGEMNP 598 Query: 585 NDLRN 589 + L + Sbjct: 599 DQLWD 603 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 37/60 (61%), Positives = 49/60 (81%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEMN QLW+TTLNP++R+LL+V I DA++A+ + S LMGD VEPR+ + Sbjct: 583 KGALIQRYKGLGEMNPDQLWDTTLNPESRTLLQVTIEDAAKAEKMVSLLMGDIVEPRKNY 642 >gi|283782558|ref|YP_003373312.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05] gi|297243224|ref|ZP_06927159.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis AMD] gi|298253027|ref|ZP_06976819.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis 5-1] gi|283442041|gb|ADB14507.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05] gi|296888758|gb|EFH27495.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis AMD] gi|297532422|gb|EFH71308.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [Gardnerella vaginalis 5-1] Length = 691 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 257/632 (40%), Positives = 371/632 (58%), Gaps = 28/632 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 25 DSLAPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 83 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D + V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 84 HIEVTILPDNAIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 143 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179 VG+SVVNALS+ +++ ++R+G + ++++ PL G G TGT VTF P Sbjct: 144 VGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPLAK-GEPMAEGESTGTSVTFWPDG 202 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREIT 222 IF ++++TL+ R ++++FLN ++ISL D R + R ++ Sbjct: 203 TIFETTVYDFETLRSRFQQMAFLNKGLKISLTDLRKPDEAGDEVAGDSESSSEEKHRSVS 262 Query: 223 MFYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTN 278 Y+ GI+ +V YL + +K + I + I I ++AM+W Y E V F N Sbjct: 263 YQYEHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEIGISAEIAMQWTVAYSEAVHTFAN 322 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 I +GGTH G R+ALT + Y + K+ ++ GDD REG T+V+S+K+ P+ Sbjct: 323 TISTTEGGTHEEGFRAALTTLVNRYAREKNILKEKDTNLSGDDVREGLTAVVSVKLTTPQ 382 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 F QTK KL +SE ++ V+ + + L W + HP EAK I++K ++AS R AA++AR+ Sbjct: 383 FEGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKAREN 442 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR QAILPLRGKIL Sbjct: 443 TRRKSIFETAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRDPITQAILPLRGKIL 502 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 N ERA D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL L Sbjct: 503 NTERASIDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNL 561 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCD 577 T FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 562 TLFFRYMRPMITAGYVYVAMPPLYRLKWSKGAHDFVYTDAERDRVLAEGKAAGRQLPKGE 621 Query: 578 SKGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 ++ + Sbjct: 622 GIQRYKGLGEMSYQELWETTMDPEHRILKQIH 653 Score = 148 bits (373), Expect = 5e-33, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L ++ I DA++AD+ Sbjct: 604 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIEDAARADET 663 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ + Sbjct: 664 FSMLMGDEVEPRRLFIQRNAHDA 686 >gi|19909689|dbj|BAB87040.1| DNA gyrase subunit B [Halorubrum saccharovorum] Length = 594 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 262/563 (46%), Positives = 360/563 (63%), Gaps = 9/563 (1%) Query: 34 DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93 TD GLHH++YEV+DN+IDE+L GY D ITVT++ D S +VSD+GRGIP D H++ Sbjct: 1 STD-GRGLHHLVYEVVDNSIDEALAGYCDEITVTIHDDNSVSVSDDGRGIPVDTHEKYDR 59 Query: 94 SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153 A EVIMT LHAGGKF+ KSY+VSGGLHGVGVSVVNALS L++ +KR+G +Y F G Sbjct: 60 PALEVIMTVLHAGGKFDSKSYQVSGGLHGVGVSVVNALSERLEVEVKRDGGVYRHEFHRG 119 Query: 154 ILDNP--LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLI 211 V +TGT + F P +IF F + TL +RLREL+FLNS V +SL+ Sbjct: 120 EPAEDGFERVRDLDDEETGTYIRFWPDEEIFETTAFEFSTLANRLRELAFLNSGVAVSLV 179 Query: 212 DKRSPEPREITMFYKGGIEAF----VSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 D+R P + L+ + P+ I + +D+I +++AM+ + Sbjct: 180 DERDEGPSTTRATRRRSATRRHSGVRRLLNETRTPIHDEVIYFEDEQDDIHVEVAMQATE 239 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 +V F NNI ++GGTHL+G ++ALTR + Y + ++ G+D REG T Sbjct: 240 ELQGSVHAFANNINTREGGTHLTGFKTALTRTVNDYANEHGLVDDLDANLKGEDVREGLT 299 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+S+K PDP+F QTK KL +SEVR +VES ++ L + EE+P A+ +V K +A+ Sbjct: 300 AVISVKHPDPQFEGQTKTKLGNSEVRGIVESATHEKLGTFFEENPDTARKVVHKAAEAAR 359 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R AA++A +LTRRK L+ +LPGKLADC RDP ++ELF+VEGDSAGGSAKQGR+REN Sbjct: 360 ARKAAKKAEELTRRKSALESTALPGKLADCQTRDPTEAELFVVEGDSAGGSAKQGRNREN 419 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPL+GKILNVE+ R D++L + EI LITA+G GIG++ FDI+ +RY+KIIIMTDAD Sbjct: 420 QAILPLKGKILNVEKHRLDRILENDEIRALITAIGAGIGEE-FDIDDVRYNKIIIMTDAD 478 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLT +R M L+ G++Y +PPLY + EE + + + Sbjct: 479 VDGAHIRTLLLTLLYRHMKPLLEAGYVYAAQPPLYRVRNRGETYDAMTEEERDRIVAEKC 538 Query: 568 -LSEEIELFCDSKGVISKNDLRN 589 + G ++ + L + Sbjct: 539 DGDPDQVQRFKGLGEMNPDQLWD 561 Score = 120 bits (301), Expect = 9e-25, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 39/51 (76%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEV 785 +QR+KGLGEMN QLW+TT++P+ R L R+ + DA+ AD +F+ LMGD V Sbjct: 544 QVQRFKGLGEMNPDQLWDTTMDPENRRLKRINVHDAAAADRMFNVLMGDAV 594 >gi|183602673|ref|ZP_02964037.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219682504|ref|YP_002468887.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011] gi|241190071|ref|YP_002967465.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195477|ref|YP_002969032.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218091|gb|EDT88738.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019] gi|219620154|gb|ACL28311.1| DNA gyrase, B subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248463|gb|ACS45403.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250031|gb|ACS46970.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177774|gb|ADC85020.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12] gi|295793058|gb|ADG32593.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9] Length = 705 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 262/638 (41%), Positives = 367/638 (57%), Gaps = 26/638 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 39 DTLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 97 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG S E +MT+LHAGGKF Y VSGGLHG Sbjct: 98 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGKSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ PL TGT VTF Sbjct: 158 VGISVVNALSTRVDVEVRRQGYYWTQTYIDQHPTGPLERGRAMRDDESTGTSVTFWADPK 217 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE-----------------PREITM 223 IF ++++TL+ R ++++FLN ++I+L D R + + +T Sbjct: 218 IFETTIYDFETLRSRFQQMAFLNKGLKITLTDMRQVDEARDEVAGDGDNTVEELHQTVTY 277 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNN 279 YK GI+ +V++ R P+ I I+ I + ++AM+W Y E+V F N Sbjct: 278 QYKNGIKDYVAFLVKSRGSAPIEPDVIDIESEDLTIGVSAEIAMQWTSAYSESVHTFANT 337 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT I Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 338 IATTEGGTHEEGFRAALTSMINRYARDKNILKDKDDNLSGDDVREGLTAVISVKLTNPQF 397 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ +N+ L WL+ HP EAK I++K L+AS R AA++AR+ T Sbjct: 398 EGQTKTKLGNSEAKTFVQRVMNEKLGDWLDAHPNEAKNIIQKALEASRARLAAKKARENT 457 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC DP + ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 458 RRKSIFESAGMPDKLKDCQSNDPSECELFIVEGDSAGGSAIQGRNPLTQAILPLRGKILN 517 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+ML S I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 518 TERASLDRMLKSDTIESLITAIGGGYGED-FDLDKVRYHKVIIMADADVDGAHIATLNLT 576 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 577 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 636 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQA 616 ++ + QA Sbjct: 637 IQRYKGLGEMSYQELWETTMDPDHRILKQVHIEDALQA 674 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++PD R L +V I DA QAD+ Sbjct: 618 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVHIEDALQADET 677 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ + Sbjct: 678 FSMLMGDEVEPRRLFIQRNAHNA 700 >gi|163745982|ref|ZP_02153341.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45] gi|161380727|gb|EDQ05137.1| DNA topoisomerase IV, B subunit [Oceanibulbus indolifex HEL-45] Length = 651 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 230/576 (39%), Positives = 324/576 (56%), Gaps = 16/576 (2%) Query: 1 MSD---NIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M+D + + YDA SI++L+GL+ V+KRP MYIG TD E LHH++ EVLDN++DE++ Sbjct: 1 MTDLLSGQEPTDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEVLDNSMDEAV 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A+ I V LN D S T+ DNGRGIP D H + SA EVI+ LHAGGKF+ K+Y+ Sbjct: 60 AGHANRIEVELNADYSVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQT 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS + +++ R ++E SF GI P+ G+A N GT VTF Sbjct: 120 SGGLHGVGASVVNALSDSMVVQVARNRELFEQSFSRGIPQGPVEKIGAAPNRRGTTVTFH 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFVS 234 IF F L +R ++L S V+I + P E T + GG+ ++ Sbjct: 180 ADEQIFGAHRFKPSRLLKMVRSKAYLFSGVEIRWKSEIEDGDTPMEATFHFPGGLADYLR 239 Query: 235 YLDRHKKPLMQSPIRIQGSRD-----NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 ++P ++ A+ W + + N +P +GGTH Sbjct: 240 ETLGKATTYAENPFAGTVEFQERFGVPGKVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 G +A+ + I +Y E + K + DD G +++S + +P F QTK++L + Sbjct: 300 GGFWAAILKGIRAYGELANNRKAKD--ITRDDLITGGCALVSCFIREPEFVGQTKDRLAT 357 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 +E +VE+ V D WL A I+ ++ + R R+ ++ T RK Sbjct: 358 TEAARLVENAVRDHFDNWLAADTKSAGAILDFLVLRAEERMRRRQEKE-TARKSATKKLR 416 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DC+ + + +ELF+VEGDSAGGS K R+R QA+LPL+GKILNV A K+ Sbjct: 417 LPGKLTDCTSKTREGTELFIVEGDSAGGSGKGARNRNTQALLPLKGKILNVLGAASSKIT 476 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI L ALG G+G F+++ LRY KIIIMTDADVDGAHI LL+TFFF QM LI Sbjct: 477 TNAEISDLCEALGVGMG-TKFNLDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPLI 535 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 +G LY+ PPL+ +T+G Y DE +L Sbjct: 536 DSGHLYLACPPLFRLTQGAKRVYCLDEAEKNMWLEK 571 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 5/149 (3%) Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 D ++ V + F F I S + + L ++ Sbjct: 503 YDKIIIMTDADVDGAHIAALLMTFFFTQMRPLIDSGHLYLACPPLFRLTQGAKRVYCLDE 562 Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775 + +G KG I + R+KGLGEM+A L ETT++P TR L+RV + + + D Sbjct: 563 AEKNMWLEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPATRKLIRVTVDEDVPGETGD 622 Query: 776 LFSRLMGDEVEPRREFIQENSLPS-ALDI 803 L RLMG + E R E+IQ+N+ LD+ Sbjct: 623 LVERLMGKKPEMRFEYIQQNAQFVEELDV 651 >gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus] Length = 640 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 284/591 (48%), Positives = 390/591 (65%), Gaps = 10/591 (1%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 SD +Y A IQ+L+GL+AV+KRP MYIG T E LH + E++DN+IDE+L GYA Sbjct: 6 SDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTQRE--LHISV-EIVDNSIDEALAGYA 62 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 + I V + D V+DNGRGIP D+ ++ G A EVI+T LHAGGKF YKVSGGLH Sbjct: 63 NKIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH 122 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVG SVVNALS L++ + R IY ++ G+ L G + TGT + F +I Sbjct: 123 GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVG-TTDKTGTVIRFKADGEI 181 Query: 182 FSVQD-FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT-MFYKGGIEAFVSYLDRH 239 F+ +NY+TLQ R+REL+FLN +QI+L D+R E Y+GGI+++V L+ + Sbjct: 182 FTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNEN 241 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 K+P+ PI I S+D+I +++A+++N GY N+L + NNI +GGTH G + ALTR Sbjct: 242 KEPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALTRV 301 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESF 359 + SY S ++++ G+D REG T+++SIK DP+F QTK KL +SEVR VV+ Sbjct: 302 LNSYGLSSRY--EEEKIASGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKL 359 Query: 360 VNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSE 419 ++ +L E+P A+ +V+K + A+ R AA++AR++TRRK LD+ASLPGKLADCS Sbjct: 360 FSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSS 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 + P++ E+FLVEGDSAGGS K GR QAILPLRGKILNVE+AR D++L++ EI +IT Sbjct: 420 QSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMIT 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A GTGIG D FD+ K RYHKI+IMTDADVDGAHIRTLLL FF+R M LI G++YI +P Sbjct: 480 AFGTGIGGD-FDLAKARYHKIVIMTDADVDGAHIRTLLLIFFYRFMRPLIEAGYVYIAQP 538 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSE-EIELFCDSKGVISKNDLRN 589 PLY +T+GK YV ++ L+ + + G ++ + L Sbjct: 539 PLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIALYKGLGEMNADQLWE 589 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI- 729 V + IF + I + + + L K + LD + S Sbjct: 507 VDGAHIRTLLLIFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRE-LDKLKSEL 565 Query: 730 ---GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVE 786 + I++ YKGLGEMNA QLWETT+NP+ R+LL+VK+ DA +AD F LMGD VE Sbjct: 566 NPTPKWSIAL--YKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVE 623 Query: 787 PRREFIQENSLPSALD 802 RR+FI++N++ + LD Sbjct: 624 NRRQFIEDNAVYANLD 639 >gi|308235537|ref|ZP_07666274.1| DNA gyrase subunit B [Gardnerella vaginalis ATCC 14018] gi|311114018|ref|YP_003985239.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella vaginalis ATCC 14019] gi|310945512|gb|ADP38216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella vaginalis ATCC 14019] Length = 691 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 255/631 (40%), Positives = 369/631 (58%), Gaps = 26/631 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 25 DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 83 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D + V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 84 HIEVTILPDNAIKVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 143 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSD 180 VG+SVVNALS+ +++ ++R+G + ++++ PL G TGT VTF P Sbjct: 144 VGISVVNALSTRVEIEVRRQGFHWTQTYVDQHPTAPLEKGKPMEEGESTGTSVTFWPDGA 203 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR-----------------SPEPREITM 223 IF ++++TL+ R ++++FLN ++ISL D R + + ++ Sbjct: 204 IFETTTYDFETLRSRFQQMAFLNKGLKISLTDLRKPDEAGDEVTGENESTSEEKHQSVSY 263 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGSRDNISI--DLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + I + I I ++AM+W Y E V F N Sbjct: 264 KYDHGIKDYVDYLVKSRKAVPVEPDVIDFEAEDLEIGISAEIAMQWTVAYSEAVHTFANT 323 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y + K+ ++ GDD REG T+V+S+K+ P+F Sbjct: 324 ISTTEGGTHEEGFRAALTSLVNRYAREKNILKEKDTNLSGDDVREGLTAVVSVKLTTPQF 383 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + + L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 384 EGQTKTKLGNSEAKTFVQRVMTEKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 443 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR QAILPLRGKILN Sbjct: 444 RRKSIFETAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRDPITQAILPLRGKILN 503 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 504 TERASIDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 562 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 563 LFFRYMRPMITAGYIYVAMPPLYRLKWSKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 622 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 ++ + Sbjct: 623 IQRYKGLGEMSYQELWETTMDPEHRILKQIH 653 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L ++ I DA++AD+ Sbjct: 604 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQIHIEDAARADET 663 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ + Sbjct: 664 FSMLMGDEVEPRRLFIQRNAHDA 686 >gi|257085132|ref|ZP_05579493.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1] gi|256993162|gb|EEU80464.1| gram positive topoisomerase IV [Enterococcus faecalis Fly1] Length = 663 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 259/640 (40%), Positives = 370/640 (57%), Gaps = 15/640 (2%) Query: 25 KKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIP 84 +KRP MYIG TD GLHH++YE++DNA+DE+L GY + I VT+ D S V+D+GRG+P Sbjct: 2 RKRPGMYIGSTDS-RGLHHLVYEIVDNAVDEALSGYGNEINVTIQKDNSICVADSGRGMP 60 Query: 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGN 144 T +H GI EVI T LHAGGKF Q YK SGGLHGVG SVVNALS WL++ I R+G Sbjct: 61 TGMHAS-GIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGV 119 Query: 145 IYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLN 203 Y F + G L G GT VTFLP IFS +F+Y+ L RLRE +FL Sbjct: 120 EYMERFEDGGKPIGTLKKIGKTKKRNGTSVTFLPDDTIFSTTNFSYEILAERLRESAFLL 179 Query: 204 SSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAM 263 V+I+L D+R EP+E Y+ GI+ FV+YL+ K L + G+++ I ++LA Sbjct: 180 KGVKITLTDERGEEPKEEVFHYEEGIKEFVAYLNEEKDTLTP-VVYFSGAKEGIEVELAY 238 Query: 264 RWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCR 323 ++NDGY ENVL F NN+ KDGGTH G+++++T+ Y K K+ +++ G D R Sbjct: 239 QYNDGYSENVLSFVNNVRTKDGGTHEVGMKTSMTKAYNEYARKVGLLKEKDKNLEGSDFR 298 Query: 324 EGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKK 381 EG +VLSI++P+ +F QTK KL + R+VV++ V + + +L+E+ ++ +++K Sbjct: 299 EGLAAVLSIRVPENLLQFEGQTKGKLGTPLARTVVDNVVGEQMGFYLQENSEMSQSLIRK 358 Query: 382 VLDASMVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSA 439 + A R+AAR+AR+ +K + L GKL R+PKK+EL+LVEGDSAGGSA Sbjct: 359 AIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAGGSA 418 Query: 440 KQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHK 499 KQGR R+ QAILPLRGK++N E+A+ +L ++EI T+I +G G+G F I Y K Sbjct: 419 KQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVG-PEFSIEDCNYDK 477 Query: 500 IIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESL 559 IIIMTDAD DGAHI+ LLLTFF+R M LI G +YI PPLY +++G + V Sbjct: 478 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVI----- 532 Query: 560 EDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVIS 619 +Y E+ ++ + ++ + + + I+ A + Sbjct: 533 -EYAWTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQA 591 Query: 620 GVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINN 659 + + + F E+ S + Sbjct: 592 ERRVTTLMGDKVEPRRKWIEQHVQFTLEEDGSILDRSEED 631 Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 6/258 (2%) Query: 544 ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKD 603 I + + ++ + S + ++ ++ Sbjct: 356 IRKAIKAREAREAARKAREESRNGKKRKKGESLLSGKLTPAQSRNPKKNELYLVEGDSAG 415 Query: 604 FYPNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNS 660 + QA++ V N E + ++ ++ + I + N Sbjct: 416 GSAKQGRDRKFQAILPLRGKVINTEKAKMQDILKNEEINTMIYTIGAGVGPEFSIEDCNY 475 Query: 661 DILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI---T 717 D ++ + F + I + ++ + + K + Sbjct: 476 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVYIALPPLYKVSKGTGKKSVIEYA 535 Query: 718 GPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLF 777 L + KG +QRYKGLGEMNA QLWETT++P+TR+L+RV+I DA+QA+ Sbjct: 536 WTDGELAEVIDKVGKGYMLQRYKGLGEMNAEQLWETTMDPETRTLIRVRIDDAAQAERRV 595 Query: 778 SRLMGDEVEPRREFIQEN 795 + LMGD+VEPRR++I+++ Sbjct: 596 TTLMGDKVEPRRKWIEQH 613 >gi|77464346|ref|YP_353850.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides 2.4.1] gi|77388764|gb|ABA79949.1| DNA topoisomerase II/DNA gyrase, subunit B [Rhodobacter sphaeroides 2.4.1] Length = 663 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++++ Q +YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE++ Sbjct: 13 MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A I V L+ D S TV DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y+ Sbjct: 72 AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS L++ + R ++ SF GI P+ + G+A N GT +TF Sbjct: 132 SGGLHGVGASVVNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFH 191 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234 P +IF F L +R ++L S V+I P+E + GG+ +++ Sbjct: 192 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251 Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 + + S++ A+ W + + N +P +GGTH Sbjct: 252 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG SA+ + I +Y E + + DD G ++++S+ + +P+F QTK++L + Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 369 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 E +VE+ V D WL + A I+ ++ RR T+RK Sbjct: 370 EEASKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DCS +ELF+VEGDSAGGSAK R R QA+LPLRGKILNV A KM Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 488 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI L ALGTG+G F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM LI Sbjct: 489 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 G LY+ PPLY +T+G YV D+ E ++ Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 583 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ D ++ V + F F I + + L Sbjct: 507 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566 Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++ + + +G KG I +QR+KGLGEM+A L +TT+NP TR L+RV I + Sbjct: 567 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626 Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R ++IQEN+ LD+ Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663 >gi|296120379|ref|YP_003628157.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] gi|296012719|gb|ADG65958.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] Length = 635 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 242/637 (37%), Positives = 359/637 (56%), Gaps = 24/637 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 ++Y A I++++GL+AV++RPSMYIG D GLHH+++E++DN++DE L G A ITVT Sbjct: 3 TAYTASDIEVIEGLEAVRRRPSMYIGGVDA-RGLHHLLWEIVDNSVDECLAGEATEITVT 61 Query: 68 LNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L+ DG SC+VSDNGRGIP DLH + SA E I+T LH+GGKF++ +Y SGGLHGVG S Sbjct: 62 LHKDGESCSVSDNGRGIPVDLHPKTKKSALETILTTLHSGGKFSKNAYARSGGLHGVGSS 121 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD 186 VVNALS + I R+G ++ F G L GT+V F P +IF+ Sbjct: 122 VVNALSEEMVATIHRDGFEWQQRFKRGKPTTALKQVRP-FRGRGTDVFFRPDKEIFARTV 180 Query: 187 FNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQS 246 F+ +T++ L ++S++++ ++I+LID+ E + + +KP+ ++ Sbjct: 181 FSIETIKAHLEDISYIHAGLKITLIDEAKKETVVLHHPDGLQTYLARLMTEGQRKPVHEN 240 Query: 247 PIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEK 306 + + ++ RW++ E++ + N I GGTH SGL+SA+ + + +Y+E Sbjct: 241 LFQFSKDDGSYKVEAVFRWSESTDEHLRSYVNGIRTHAGGTHESGLKSAIGKAVRNYMEV 300 Query: 307 SFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSA 366 K ++ DD REG +LS+ + +P F QTKEKL + E+ SVVE + L Sbjct: 301 H-DIKVKGLTIQNDDIREGIVGLLSVFLAEPMFQGQTKEKLNNPEMSSVVEGQIRPALEN 359 Query: 367 WLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGV-LDIASLPGKLADCSERDPKKS 425 WL + A IV +++ A+ R A+R A RRK SLPGKL DC + +S Sbjct: 360 WLSSNKTTADAIVGRIVLAARARAASREAASEVRRKSPAARRLSLPGKLLDCRSTNADES 419 Query: 426 ELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGI 485 ELF+VEG SAGG+A GR QA+LPLRGK+LN + K+L +QEI L+ LGTGI Sbjct: 420 ELFIVEGLSAGGTAGMGRDSRTQAVLPLRGKVLNTQNMTTAKILDNQEIKDLVETLGTGI 479 Query: 486 GQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT 545 G +FD+++LRY KII+M DAD DG HI TLLLTFFF MP LI G L++ +PPLY I Sbjct: 480 G-PNFDLHRLRYGKIILMMDADSDGYHISTLLLTFFFGHMPVLITQGKLFLAQPPLYRIQ 538 Query: 546 RGKSLQYVKDEESLEDYLINQSLSE------------------EIELFCDSKGVISKNDL 587 G + Y +D+ E++L + + + ++ + D+ Sbjct: 539 SGNQIFYARDDLHKEEFLDSLPANRNPDVLRFKGLGEMTPSQLKETTLDPKTRILLRIDI 598 Query: 588 RNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNC 624 N ++ +KL+ K +EQA + Sbjct: 599 DNQLEADQTFEKLLGKEPAERYKLIMEQANQVDDLDV 635 Score = 97.4 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSL 797 R+KGLGEM SQL ETTL+P TR LLR+ I + +AD F +L+G E R + I E + Sbjct: 569 RFKGLGEMTPSQLKETTLDPKTRILLRIDIDNQLEADQTFEKLLGKEPAERYKLIMEQAN 628 Query: 798 PS-ALDI 803 LD+ Sbjct: 629 QVDDLDV 635 >gi|119025023|ref|YP_908868.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703] gi|154486351|ref|ZP_02027758.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis L2-32] gi|118764607|dbj|BAF38786.1| DNA gyrase (topoisomerase II) B subunit [Bifidobacterium adolescentis ATCC 15703] gi|154084214|gb|EDN83259.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis L2-32] Length = 712 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 257/605 (42%), Positives = 364/605 (60%), Gaps = 25/605 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 47 DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 105 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V D+GRGIP D EGIS E +MT+LHAGGKF Y VSGGLHG Sbjct: 106 HIEVTILPDGGVRVVDDGRGIPVDEVPGEGISGVETVMTKLHAGGKFGGGGYAVSGGLHG 165 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA--GNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++I+ L+ G TGT VTF Sbjct: 166 VGISVVNALSTRVDIEVRRQGFHWTQTYIDQKPTARLLKGKPMEEGESTGTSVTFWADGK 225 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID----------------KRSPEPREITMF 224 IF ++++ L++R ++++FLN ++ISL D + + + +T Sbjct: 226 IFETTTYDFEILRNRFQQMAFLNKGLKISLTDLREPDQAGDEVSGEESETEDKFQTVTYQ 285 Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y GI+ +V YL + +K I + + IS ++AM+W Y E V F N I Sbjct: 286 YNDGIKDYVDYLVKSRKATPVEPDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANTI 345 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT + Y + K ++ GDD REG T+V+S+K+ +P+F Sbjct: 346 STTEGGTHEEGFRAALTSLVNRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTNPQFE 405 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ TR Sbjct: 406 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPNEAKNIIQKAIEASRARLAAKKARENTR 465 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 466 RKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILNT 525 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERA D+M+ S I +LITA+G G G+D FD+NK+RYHK+IIM DADVDGAHI TL LT Sbjct: 526 ERASLDRMMKSDTIESLITAVGGGYGED-FDLNKVRYHKVIIMADADVDGAHIATLNLTL 584 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDSK 579 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 585 FFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKAAGRQLPKGEGI 644 Query: 580 GVISK 584 Sbjct: 645 QRYKG 649 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++PD R L +V+I DA+ AD+ Sbjct: 625 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPDHRILKQVQIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNARNV 707 >gi|138895303|ref|YP_001125756.1| DNA topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2] gi|134266816|gb|ABO67011.1| Topoisomerase IV subunit B [Geobacillus thermodenitrificans NG80-2] Length = 617 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 250/572 (43%), Positives = 357/572 (62%), Gaps = 16/572 (2%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG TD GLHH++YE++DN++DE+L GY + I V ++ D S TV D GRG+P +H Sbjct: 1 MYIGSTDS-RGLHHLVYEIVDNSVDEALAGYGNYILVQIHKDNSVTVLDEGRGMPVGMH- 58 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + G EVI+T LHAGGKF Q YK SGGLHGVG SVVNALS WL + I R+G IY Sbjct: 59 KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLVVTIHRDGFIYRQR 118 Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208 F N G L G N TGT + F P IFS F+Y+TL RLRE +FL ++I Sbjct: 119 FENGGKPVTTLENIG-TTNKTGTIIQFKPDPTIFSTTVFDYETLSERLRESAFLLKGLKI 177 Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 L+D+R+ Y+ GIEAFV+YL+ K L G ++ I ++ A +++DG Sbjct: 178 ELVDERTG--MREVFHYENGIEAFVAYLNEEKDVLHPVA-YFAGEQNGIEVEFAFQFHDG 234 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y ENVL F NN+ KDGGTH +G ++A+TR Y + K+ +++ G D REG ++ Sbjct: 235 YSENVLSFVNNVRTKDGGTHEAGAKTAMTRVFNEYARRVGLLKEKDKNLEGTDIREGMSA 294 Query: 329 VLSIKMPD--PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 ++S+++P+ +F QTK KL +SE RS V++ V++ L+ +L+E+P + +++KK + A Sbjct: 295 IVSVRIPEHLLQFEGQTKGKLGTSEARSAVDAVVSEQLTYFLQENPDVSAMLIKKAIRAY 354 Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 R+AAR+AR+ + +K A L GKL R+P+K+EL+LVEGDSAGGSAKQGR Sbjct: 355 QAREAARKAREEARSGKKRKGKEALLSGKLTPAQGRNPQKNELYLVEGDSAGGSAKQGRD 414 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QA+LPLRGK++N E+A+ +L ++EI T+I A+G G+G D F I + Y K+IIMT Sbjct: 415 RRFQAVLPLRGKVINTEKAKLGDILKNEEINTIIHAIGGGVGAD-FSIEDINYDKVIIMT 473 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGIT----RGKSLQYVKDEESLE 560 DAD DGAHI+ LLLTFF+R M LI G +YI PPLY I+ + ++++Y +E L Sbjct: 474 DADTDGAHIQVLLLTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLR 533 Query: 561 DYLINQSLSEEIELFCDSKGVISKNDLRNFID 592 + I+ + + + ++ Sbjct: 534 EITKKMGRGYTIQRYKGLGEMNADQLWETTMN 565 Score = 159 bits (403), Expect = 2e-36, Method: Composition-based stats. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 V N E + ++ ++ ++ I + N D ++ + Sbjct: 427 VINTEKAKLGDILKNEEINTIIHAIGGGVGADFSIEDINYDKVIIMTDADTDGAHIQVLL 486 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GISMQ 737 F + I + ++ + + K + + + I +K G ++Q Sbjct: 487 LTFFYRYMRPLIEAGKVYIALPPLYKISKGSGKKETVEYAWTDEQLREITKKMGRGYTIQ 546 Query: 738 RYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 RYKGLGEMNA QLWETT+NP+TR+L+RV+I DA++A+ + LMGD+VEPRR++I+ + Sbjct: 547 RYKGLGEMNADQLWETTMNPETRTLIRVRIEDAARAERRVTTLMGDKVEPRRKWIETH 604 >gi|221640231|ref|YP_002526493.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides KD131] gi|332559237|ref|ZP_08413559.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N] gi|221161012|gb|ACM01992.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides KD131] gi|332276949|gb|EGJ22264.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N] Length = 651 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++++ Q +YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE++ Sbjct: 1 MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 59 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A I V L+ D S TV DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y+ Sbjct: 60 AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 119 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS L++ + R ++ SF GI P+ + G+A N GT +TF Sbjct: 120 SGGLHGVGASVVNALSDTLRVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFH 179 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234 P +IF F L +R ++L S V+I P+E + GG+ +++ Sbjct: 180 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 239 Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 + + S++ A+ W + + N +P +GGTH Sbjct: 240 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 299 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG SA+ + I +Y E + + DD G ++++S+ + +P+F QTK++L + Sbjct: 300 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 357 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 E +VE+ V D WL + A I+ ++ RR T+RK Sbjct: 358 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 416 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DCS +ELF+VEGDSAGGSAK R R QA+LPLRGKILNV A KM Sbjct: 417 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 476 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI L ALGTG+G F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM LI Sbjct: 477 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 535 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 G LY+ PPLY +T+G YV D+ E ++ Sbjct: 536 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 571 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ D ++ V + F F I + + L Sbjct: 495 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 554 Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++ + + +G KG I +QR+KGLGEM+A L +TT+NP TR L+RV I + Sbjct: 555 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 614 Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R ++IQEN+ LD+ Sbjct: 615 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 651 >gi|71725918|gb|AAZ39077.1| gyrase subunit B [Exiguobacterium undae] Length = 513 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 269/516 (52%), Positives = 367/516 (71%), Gaps = 4/516 (0%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 KRP MYIG T GLHH+++E++DN+IDE+L GY D I VT+ S V DNGRGIP Sbjct: 1 KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS+ L++ +KR + Sbjct: 60 DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204 Y ++ G+ L V G +TGT + F P +IF +++YD L RLREL+FLN Sbjct: 120 YYQAYHRGVPAADLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 + I + D R+ EP + Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++ Sbjct: 179 GLTIEITDDRADEPITRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 +NDG+ N+ FTNNIP +GGTH +G ++ALTR I Y +K K+ ++ G+D RE Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+++SIK P+P+F QTK KL +S+ R+ ++ + ++ E+P A+ IV+K + Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR+LTRRKGVL+++SLPGKLADCS RD SE+++VEGDSAGGSAK GR Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 DADVDGAHIRTLLLTFF+R M L+ +G++YI +PP Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513 >gi|163814200|ref|ZP_02205592.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759] gi|158450649|gb|EDP27644.1| hypothetical protein COPEUT_00354 [Coprococcus eutactus ATCC 27759] Length = 647 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 243/607 (40%), Positives = 351/607 (57%), Gaps = 17/607 (2%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +I++LKGL+ V+ RP MYIG+T G SGL+H+I E++DN++DE L GY + I V++ Sbjct: 16 SYSAKNIEVLKGLEPVRLRPGMYIGNT-GRSGLNHLIQELIDNSVDEHLAGYCNNIWVSI 74 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TVSD+GRG+P DLH++EGI A V+ T LHAGGKFN +YK+SGGLHGVG +VV Sbjct: 75 NEDGSATVSDDGRGVPVDLHEQEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 134 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNP-----LVVTGSAGNDTGTEVTFLPSSDIFS 183 NALS+ L + + R+G +Y ++ GI L T TGT VT P IF Sbjct: 135 NALSNKLIVDVARDGYLYHDTYEKGIPTTELVDGMLPKTKLKEKRTGTTVTLYPDDTIFE 194 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F D ++ R++E ++LN ++ I+ +KR E + GG+ AFV + + Sbjct: 195 TVKFKADAIKQRIKETAYLNPNLTITFQNKRDGEEPIV-FHQPGGLSAFVEDISQGLT-H 252 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + I G +D I+ D+ D EN++ FTNNI +GGTH++G +SA + I +Y Sbjct: 253 TSPVVAISGEKDGIAADIVFLMTDDGEENIIGFTNNITNPEGGTHVTGFKSAFAKLINNY 312 Query: 304 VEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVND 362 K+ ++ G D R G +++S+K PDP+F QTK KL +++V V+ V + Sbjct: 313 ARNELGVLKEKDSNLTGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVSKAVDDIVKE 372 Query: 363 GLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDP 422 L+ + + + K IV + + ++ + A + K + K D Sbjct: 373 QLTVYFDRNYDVLKDIVDRAV--ALSKRKALEKSKININKFSFEGNGKLAK---QESSDS 427 Query: 423 KKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALG 482 K E+F+VEGDSAGGSAK R+R+ QAILPLRGKILNVE+ K+L + EI LI A G Sbjct: 428 SKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKPVAKVLENAEIKALINAFG 487 Query: 483 TGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 G Q + FDI+KL Y KIIIMTDADVDGAHI TLLLTFF+R P LI G +YI P Sbjct: 488 CGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLISEGHIYIAIP 547 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDK 599 PLY + GK+++Y+ ++ L Y + I+ + + + ++ ++ K Sbjct: 548 PLYRVGEGKNIKYLYSDDELAKYRKTHTSKFTIQRYKGLGEMDADQLYETTMNPETRLLK 607 Query: 600 LIKDFYP 606 + Sbjct: 608 QVSVNSR 614 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 5/187 (2%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN----NSDILVKRIARGVQEQFV 676 + N E V +++ +N + + + N D ++ V + Sbjct: 462 ILNVEKKPVAKVLENAEIKALINAFGCGFMQGYGNDFDISKLNYDKIIIMTDADVDGAHI 521 Query: 677 LEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISM 736 F + Y + S + L + G IK L ++ Sbjct: 522 ATLLLTFFYRF-YPDLISEGHIYIAIPPLYRVGEGKNIKYLYSDDELAKYRKTHTSKFTI 580 Query: 737 QRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENS 796 QRYKGLGEM+A QL+ETT+NP+TR L +V + +A+ L LMG EV PRRE+I+ +S Sbjct: 581 QRYKGLGEMDADQLYETTMNPETRLLKQVSVNSRIEANQLTQTLMGTEVAPRREYIETHS 640 Query: 797 LPSALDI 803 + LDI Sbjct: 641 ADAVLDI 647 >gi|71725916|gb|AAZ39076.1| gyrase subunit B [Exiguobacterium sibiricum] Length = 513 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 268/516 (51%), Positives = 367/516 (71%), Gaps = 4/516 (0%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 KRP MYIG T GLHH+++E++DN+IDE+L GY D I VT+ S V DNGRGIP Sbjct: 1 KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIEPGNSILVEDNGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS+ L++ +KR + Sbjct: 60 DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204 Y ++ G+ L + G +TGT + F P +IF +++YD L RLREL+FLN Sbjct: 120 YYQAYHRGVPAADLEIIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 + I + D R+ EP + Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++ Sbjct: 179 GLTIEITDDRADEPTTRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 +NDG+ N+ FTNNIP +GGTH +G ++ALTR I Y +K K+ ++ G+D RE Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVINDYAKKFGLMKEADGTLSGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G T+++SIK P+P+F QTK KL +S+ R+ ++ + ++ E+P A+ IV+K + Sbjct: 299 GMTAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR+LTRRKGVL+++SLPGKLADCS RD SE+++VEGDSAGGSAK GR Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 DADVDGAHIRTLLLTFF+R M L+ +G++YI +PP Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513 >gi|149915418|ref|ZP_01903945.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b] gi|149810707|gb|EDM70548.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b] Length = 652 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 239/655 (36%), Positives = 341/655 (52%), Gaps = 22/655 (3%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+D+ +S YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE+ Sbjct: 1 MADDLLSATDSSDYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115 + G+A+ I V L+ D + TV DNGRGIP D H + SA EVI+ LHAGGKF K+Y+ Sbjct: 60 VAGHANRIEVELHEDYALTVRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFGGKAYQ 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG SVVNALS + +++ R +YE F G+ P+ G A N GT +TF Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARNKELYEQRFSRGVPLGPIQKIGQAPNRRGTTITF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRS--PEPREITMFYKGGIEAFV 233 IF F L + +R ++L S V+I + P E T + GG+ ++ Sbjct: 180 HADEQIFGSHRFKPARLFNSIRSKAYLFSGVEIRWKSAITDGDTPTEATFHFPGGLSDYL 239 Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 P + ++ A+ W ++ + N +P +GGTH Sbjct: 240 RETMNGASTYADQPFAGTVDFQERFGMPGKVEWAINWTPSRDGSLQSYCNTVPTPEGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 ++G +A+ + I Y E + ++ +D G +++S + +P F QTK++L Sbjct: 300 VAGFWAAILKGIKGYGELVN--NRKATNITREDLMAGGCALVSCFIREPEFVGQTKDRLA 357 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 ++E + +VE+ V D WL A I+ ++ RR T+RK Sbjct: 358 TTEAQRLVENAVRDHFDNWLAADTKSAGAILDFLVLR-AEERLRRRQEKETQRKTATKKL 416 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 LPGKL DCS +ELF+VEGDSAGGSAK GR R+ QA+LPLRGKILNV A K+ Sbjct: 417 RLPGKLVDCSSNVRDGTELFIVEGDSAGGSAKMGRDRKTQALLPLRGKILNVLGAASSKL 476 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 S+QEI L ALG G+G F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM + Sbjct: 477 GSNQEIADLTQALGVGLGSK-FNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPM 535 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586 I G LY+ PPLY +T+G Y D+ + ++ + G + D Sbjct: 536 IDAGHLYLACPPLYRLTQGAKRVYCLDQAERDAWMKKGLGGKGKIDVSRFKGLGEMDAKD 595 Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L+ I I + P +E+ + N +L Sbjct: 596 LKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYISENARFVEEL 650 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Query: 734 ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADDLFSRLMGDEVEPRREF 791 I + R+KGLGEM+A L ETT++P TR L+RV I + + DL RLMG + E R ++ Sbjct: 580 IDVSRFKGLGEMDAKDLKETTMDPKTRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQY 639 Query: 792 IQENSLPS-ALDI 803 I EN+ LD+ Sbjct: 640 ISENARFVEELDV 652 >gi|18147155|dbj|BAB83058.1| DNA gyrase subunit B [Alcanivorax sp. I4] Length = 467 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 286/470 (60%), Positives = 362/470 (77%), Gaps = 4/470 (0%) Query: 34 DTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGI 93 DTD +GLHHM++EV+DN+IDE+L G+ I V ++ D S ++ DNGRGIP D+H+EEG+ Sbjct: 1 DTDDGTGLHHMVFEVVDNSIDEALAGFCSEIRVVIHPDESVSIQDNGRGIPVDIHEEEGV 60 Query: 94 SAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFING 153 SAAEVI+T LHAGGKF+ +YKVSGGLHGVGVSVVNALS LKL I+R G ++E + +G Sbjct: 61 SAAEVILTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHG 120 Query: 154 ILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK 213 + D PL V G +GT V F PSS+ FS F+YD L RLRELSFLNS V+I L D+ Sbjct: 121 VPDKPLEVVG-TTESSGTSVHFRPSSETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDE 179 Query: 214 RSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR-IQGSRDNISIDLAMRWNDGYHEN 272 RS E Y+GG+ AFVSYL+ +K PL Q D IS+++AM+WND Y EN Sbjct: 180 RSGEE--EVFEYEGGLSAFVSYLNVNKTPLNQVFHFQYDREEDGISVEVAMQWNDSYQEN 237 Query: 273 VLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSI 332 + CFTNNIPQ+DGGTHL+G R ALTR + +Y++K KK+K + GDD REG T+V+S+ Sbjct: 238 IFCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGLLKKEKANPSGDDAREGLTAVISV 297 Query: 333 KMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAA 392 K+PDP+FSSQTK+KLVSSEV+ VE + + +L E+P EAK I +K++DA+ RDAA Sbjct: 298 KVPDPKFSSQTKDKLVSSEVKGAVEQTMGELFQDYLLENPGEAKAITQKIIDAARARDAA 357 Query: 393 RRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILP 452 R+AR++TRRKG LDIA LPGKLADC ++DP SEL++VEGDSAGGSAKQGR R+NQAILP Sbjct: 358 RKAREMTRRKGALDIAGLPGKLADCQQKDPALSELYIVEGDSAGGSAKQGRDRKNQAILP 417 Query: 453 LRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 L+GKILNVE+ARFDKMLSSQE+GTLITALG GIG+D ++I+KLRYH+III Sbjct: 418 LKGKILNVEKARFDKMLSSQEVGTLITALGCGIGRDEYNIDKLRYHRIII 467 >gi|68138694|gb|AAY86002.1| GyrB [Burkholderia cenocepacia] Length = 646 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 289/647 (44%), Positives = 406/647 (62%), Gaps = 20/647 (3%) Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158 Q SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P Sbjct: 1 QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQDRVLEVVDGVEVSP 60 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 ++VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 61 MLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE 119 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278 + GG++ FV Y+++ K L + G +D + +++AM+WND Y+ENVLCFTN Sbjct: 120 --DDFAFAGGVKGFVEYINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTN 177 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+ Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPK 237 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++ Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREM 297 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L Sbjct: 298 TRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 357 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+AR+DK+LSS++I TL+TALG GIG++ ++++KLRYH+IIIMTDADVDGAHIRTLLL Sbjct: 358 NVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLDKLRYHRIIIMTDADVDGAHIRTLLL 417 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TF +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 418 TFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGEN 477 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 IS + L L +I+ +D +E AV+ GV S++ + A L Sbjct: 478 AAAISGDALGELARSYLLSQSVIERLSRLYDPAALE-AVMDGVVIDLSNEASTEASAKAL 536 Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 L+ A K+E + + V+R G V++ + + + Sbjct: 537 HAALHDEALKNEVRVVPSYDAVREQRALHVERTHHGNVRVSVIDQEFQHTADYQQLVTTA 596 Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 N + + + + S + + + + +S QRYKG Sbjct: 597 NTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 643 >gi|171920400|ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902839|gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 642 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD ++I+IL+GL+AV+KRP MYIG T +GLHH+I+E++DN+IDE + Sbjct: 1 MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ D S +V D+GRGIP D++ + IS E ++T LHAGGKF++ +YK +GGL Sbjct: 55 AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL + R+ IY+ FIN G +D L V G+ TGT + FLP Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN + ++ RL E +FL ++I DK + + G+ F+ +++ Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK I + + + I +++A +++D +E ++ F N++ +GG H + ++ALT Sbjct: 232 KKT-FSDVIYFRSNINKIEVEIAFQYSDQNNEIMVSFANSVKTNEGGVHENAFKNALTSV 290 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + +Y K K+ +++ GDD REG +SV+S+++P+ + QTK KL + E V+ Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + D S WLEE+ +A +V + + A + AA+RAR+ T++ K + + + GKL Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 +DP +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR +L ++EI + Sbjct: 411 AQSKDPTLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M LI NG +YI Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +T + ++ + +E + + G ++ + L Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + I + L +K + LD + +K +QRYKGLGEMNA QL Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +ETT++P+ R LL++ I D QA+ + LMG++V R+++I N Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625 >gi|291455697|ref|ZP_06595087.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213] gi|291382625|gb|EFE90143.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213] Length = 712 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 256/653 (39%), Positives = 371/653 (56%), Gaps = 28/653 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 +++ Y+A +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 46 ESMAPEHYEASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 104 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 105 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 164 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLV--VTGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + ++++ PL + TGT VTF Sbjct: 165 VGISVVNALSTHVDIEVRRQGFHWTQTYVDQHPVAPLKQGEPMAEDESTGTSVTFWADPK 224 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLID-----------------KRSPEPREITM 223 IF ++++TL+ R ++++FLN +++SL D + + + +T Sbjct: 225 IFETTIYDFETLRSRFQQMAFLNKGLKLSLTDERVTDQAGDEVAGDAEGEPGEKHQTVTY 284 Query: 224 FYKGGIEAFVSY--LDRHKKPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V Y R P+ + I + + IS +LAM+W Y E V F N Sbjct: 285 QYLNGIKDYVDYLVKVRKATPVEEDVISFEAEDLKLGISAELAMQWTTAYSEAVHTFANT 344 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT + Y K ++ GDD REG T+V+S+K+ +P+F Sbjct: 345 ISTTEGGTHEEGFRAALTSLVNRYARDKAILKDKDENLSGDDVREGLTAVISVKLTNPQF 404 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 405 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARLAAKKARENT 464 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 465 RRKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 524 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S I +LITA+G G G+D FDI+K+RYHK+IIM DADVDGAHI TL LT Sbjct: 525 TERASLDRMMKSDTIESLITAVGGGYGED-FDISKVRYHKVIIMADADVDGAHIATLNLT 583 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 584 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGPHDFVYTDAERDRVLAEGKANGRQLPKGEG 643 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEIN 631 ++ + + A F+ E+ Sbjct: 644 IQRYKGLGEMSYQELWETTMDPEHRILKQVH--IEDAAAADETFSMLMGDEVE 694 Score = 155 bits (391), Expect = 4e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V I DA+ AD+ Sbjct: 625 DRVLAEGKANGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVHIEDAAAADET 684 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 685 FSMLMGDEVEPRRLFIQRNAKNV 707 >gi|126463188|ref|YP_001044302.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17029] gi|126104852|gb|ABN77530.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 663 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 237/576 (41%), Positives = 330/576 (57%), Gaps = 16/576 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++++ Q +YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE++ Sbjct: 13 MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A I V L+ D S TV DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y+ Sbjct: 72 AGHATRIEVELHADHSVTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS L++ + R ++ SF GI P+ + G+A N GT +TF Sbjct: 132 SGGLHGVGASVVNALSDTLRVEVARNRELWMQSFSRGISQGPVKMVGAASNRRGTTITFH 191 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234 P +IF F L +R ++L S V+I P+E + GG+ +++ Sbjct: 192 PDPEIFGHLQFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251 Query: 235 YLDRHKKPLMQ-----SPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 + + S++ A+ W + + N +P +GGTH Sbjct: 252 EQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG SA+ + I +Y E + + DD G ++++S+ + +P+F QTK++L + Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITRDDMLAGGSALISVFIREPQFVGQTKDRLAT 369 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 E +VE+ V D WL + A I+ ++ RR T+RK Sbjct: 370 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DCS +ELF+VEGDSAGGSAK R R QA+LPLRGKILNV A KM Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMG 488 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI L ALGTG+G F+I++LRY KIIIMTDADVDGAHI +LL+TFFF QM LI Sbjct: 489 ANAEINDLCQALGTGMG-TRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 G LY+ PPLY +T+G YV D+ E ++ Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWMAK 583 Score = 111 bits (278), Expect = 5e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ D ++ V + F F I + + L Sbjct: 507 RFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566 Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++ + + +G KG I +QR+KGLGEM+A L +TT+NP TR L+RV I + Sbjct: 567 KRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626 Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R ++IQEN+ LD+ Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663 >gi|224283956|ref|ZP_03647278.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] gi|310286525|ref|YP_003937783.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17] gi|311063464|ref|YP_003970189.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010] gi|309250461|gb|ADO52209.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17] gi|310865783|gb|ADP35152.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010] Length = 720 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 258/630 (40%), Positives = 369/630 (58%), Gaps = 25/630 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 55 DTLSPDHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 113 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 114 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 173 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + +++N L + TGT VTF P + Sbjct: 174 VGISVVNALSTRVDIEVRRQGFHWTQTYVNQHPTARLAKGAPMAEDESTGTSVTFWPDAA 233 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMF 224 IF ++++TL+ R ++++FLN ++ISL D R P+ + +T Sbjct: 234 IFESTVYDFETLRSRFQQMAFLNKGLKISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQ 293 Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y GI+ +VSYL + +K + I + + IS ++AM+W Y E V F N I Sbjct: 294 YMNGIKDYVSYLVKSRKATPVEEDVIDFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTI 353 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT + Y K+ ++ GDD REG T+V+S+K+ P+F Sbjct: 354 STTEGGTHEEGFRAALTSLVNRYARDKNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFE 413 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ TR Sbjct: 414 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARIAAKKARENTR 473 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ E QAILPLRGKILN Sbjct: 474 RKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPETQAILPLRGKILNT 533 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERA D+M+ S I +LITA+G G G++ FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 534 ERASIDRMMKSDTIESLITAVGGGYGEE-FDVSKVRYHKVIIMADADVDGAHIATLNLTL 592 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFR M +I G++Y+ PPLY + + YV + ++ L + + Sbjct: 593 FFRYMRPMITAGYVYVAMPPLYRLKWTRGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGI 652 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 + + Sbjct: 653 QRYKGLGEMTYQELWETTMDPEHRILKQIH 682 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 50/68 (73%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEM +LWETT++P+ R L ++ I DA+ AD+ FS LMGD+VEPRR F Sbjct: 648 KGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIEDAAAADETFSMLMGDDVEPRRLF 707 Query: 792 IQENSLPS 799 IQ N+ Sbjct: 708 IQRNAKDV 715 >gi|253681965|ref|ZP_04862762.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873] gi|253561677|gb|EES91129.1| DNA gyrase subunit B [Clostridium botulinum D str. 1873] Length = 652 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 232/609 (38%), Positives = 354/609 (58%), Gaps = 23/609 (3%) Query: 1 MS--DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLE 58 MS +N +SYD + L+ L+ V+ RP MYIG T G GLHH I+E+LDN+IDE Sbjct: 1 MSLVENKNKNSYDVTDLTSLEKLEPVRVRPGMYIGST-GTKGLHHCIWEILDNSIDEIAN 59 Query: 59 GYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSG 118 GY D +T+ LN D S T+ DNGRGIPT +H + S E++ T LH GGKFN K+YK SG Sbjct: 60 GYGDKVTLILNKDKSVTIIDNGRGIPTGIHPIKKKSGVEMVFTELHTGGKFNNKNYKTSG 119 Query: 119 GLHGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGN 167 GLHGVG +VVNALS W+++ + ++G+IY+ F G PL + G N Sbjct: 120 GLHGVGAAVVNALSEWVEVEVYQKGHIYKQRFEYAEDKSLNKKMPGTPITPLEIIGDT-N 178 Query: 168 DTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKG 227 +TGT++TF P ++FS DF ++ + RL+EL+F N + + + D+R + E + Sbjct: 179 NTGTKITFKPDKEVFSTTDFKFEVIDERLQELAFQNKGITLVIKDERKEDIIEKEYHSER 238 Query: 228 GIEAFVSYLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQK 283 G+ F+ YL+ K P+ + P+ +G R+ SI ++ +++ D EN+ + NNIP Sbjct: 239 GLLDFIEYLNESKTPIHKEPLIFEGEREVNSIKVYSEVCIQFTDSSTENIASYVNNIPTT 298 Query: 284 DGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQT 343 + GTH +G ++ +TR + K K+ R GDD REG T++L +K+ +P F QT Sbjct: 299 ESGTHETGFKTGMTRAFKEWARKLNIVKEKDRGFEGDDLREGMTAILRVKISNPIFEGQT 358 Query: 344 KEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG 403 K KL ++E +V+ + W+E++ A I+ + A+ RD ++ D ++K Sbjct: 359 KTKLGNNEAYTVMNELAYTKIGEWIEDNKEIATQIINNAVSAAARRDKIKKINDAEKKKI 418 Query: 404 VLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERA 463 A L GK++ C+ + P E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ Sbjct: 419 GKGAAPLAGKVSICTLKKPDVCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQ 478 Query: 464 RFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFR 523 R + +L+S+E+ TA+GTG+ ++++ + L+Y+KIII++DADVDG HIRTL +T+ +R Sbjct: 479 RLENVLASEELKLFNTAIGTGV-LENYNEDDLKYNKIIILSDADVDGYHIRTLWITYIYR 537 Query: 524 QMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLED---YLINQSLSEEIELFCDSKG 580 M SLI NG LYI PPLY + + VK +D + + G Sbjct: 538 YMKSLITNGHLYIALPPLYKVYKNSKNGEVKRYAYSDDELEVAKREIGKGALIQRYKGLG 597 Query: 581 VISKNDLRN 589 ++ + L + Sbjct: 598 EMNPDQLWD 606 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 37/65 (56%), Positives = 51/65 (78%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEMN QLW+TTLNP+TR+L ++ I DA++A+ + S LMGD VEPRR + Sbjct: 586 KGALIQRYKGLGEMNPDQLWDTTLNPETRTLQQITIEDAAKAEKMISLLMGDVVEPRRNY 645 Query: 792 IQENS 796 + + + Sbjct: 646 MYKYA 650 >gi|26554100|ref|NP_758034.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2] gi|26454108|dbj|BAC44438.1| DNA topoisomerase IV subunit B [Mycoplasma penetrans HF-2] Length = 631 Score = 525 bits (1352), Expect = e-146, Method: Composition-based stats. Identities = 242/585 (41%), Positives = 351/585 (60%), Gaps = 8/585 (1%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 +SY I++L+GLD V+KRP MYIG TD + GLHH+I+E+LDNA+DE + G D I +T Sbjct: 2 NSYKESDIKVLEGLDPVRKRPGMYIGSTD-QRGLHHLIWEILDNAVDEVMAGVCDTIKMT 60 Query: 68 LNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127 L+ DGS +V DNGRGIPT +H + +S + + T LHAGGKF+ +YK+SGGLHGVG SV Sbjct: 61 LHRDGSFSVEDNGRGIPTGIHPKTKMSTVDTVFTTLHAGGKFSDSAYKMSGGLHGVGSSV 120 Query: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDF 187 VNALSS+L + +KR+G IYE +++G + N TGT V FLP + IF F Sbjct: 121 VNALSSYLTVTVKRDGKIYESQYVDGGKIKQKSHIIGSTNRTGTTVRFLPDASIFKNIAF 180 Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247 + + R++E SFL ++I ++ + + T + GI FVS++ ++K + Sbjct: 181 SPSIIFERVQETSFLFKGLKIIFENEYTRKV--DTFLAQNGISEFVSFISSNQKT-ISEV 237 Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307 I I+G +I ++A ++ND E + F N++ K+GGTH +G ++ALT + Y K Sbjct: 238 IYIEGKEQDIEAEIAFQYNDSNSETFVSFANSVKTKEGGTHETGFKTALTETLNDYARKW 297 Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLS 365 K +++ G D REG V+S+++P+ + QTK KL + E SVV++ V + Sbjct: 298 KLLKDKEKNFEGSDFREGLVCVISVRIPERLISYEGQTKNKLFTQEAYSVVKNIVKTKFT 357 Query: 366 AWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLADCSERDPKK 424 WLEE+ +AK I++K + R AA++AR+ ++ KG L GKL C +D Sbjct: 358 YWLEENKKDAKTIIEKAYLSREARIAAKKAREEVKQLKGQKKEKILSGKLTPCQSKDKTI 417 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 +ELFLVEGDSAGGSAK GR + QAILPL+GK++NVE+A +L ++EI T I + G Sbjct: 418 TELFLVEGDSAGGSAKLGRDKRYQAILPLKGKVINVEKAMLKDLLKNEEIST-IISSIGG 476 Query: 485 IGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGI 544 F + ++Y KIIIMTDAD DGAHIR LLLTFF+R M LI +G +YI PPLY Sbjct: 477 SIGSDFCLPDVKYSKIIIMTDADTDGAHIRILLLTFFYRYMKELIESGRVYIALPPLYKF 536 Query: 545 TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 T K+ + E E + + G ++ + L + Sbjct: 537 TNTKNKKEFYVWEDYELEELKKDNPNYEIQRYKGLGEMNADQLWD 581 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 62/120 (51%), Gaps = 8/120 (6%) Query: 681 SIFSFGSKYKRIF--SNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRK---GIS 735 + +F +Y + S R+ + +K + D +K Sbjct: 508 LLLTFFYRYMKELIESGRVYIALPPLYKFTNTKNKKEFYVWE---DYELEELKKDNPNYE 564 Query: 736 MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +QRYKGLGEMNA QLW+TT++P+TR L++V I DA+ + S LMGD+ R+E+I +N Sbjct: 565 IQRYKGLGEMNADQLWDTTMDPETRQLIQVSIEDAALTERRVSILMGDDSSKRKEWITDN 624 >gi|313141108|ref|ZP_07803301.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] gi|313133618|gb|EFR51235.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171] Length = 694 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 258/630 (40%), Positives = 369/630 (58%), Gaps = 25/630 (3%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D + YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 29 DTLSPDHYDASDLKVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAT 87 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ D V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 88 HIEVTILPDNGIRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 147 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV--TGSAGNDTGTEVTFLPSSD 180 VG+SVVNALS+ + + ++R+G + +++N L + TGT VTF P + Sbjct: 148 VGISVVNALSTRVDIEVRRQGFHWTQTYVNQHPTARLAKGAPMAEDESTGTSVTFWPDAA 207 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR----------------SPEPREITMF 224 IF ++++TL+ R ++++FLN ++ISL D R P+ + +T Sbjct: 208 IFESTVYDFETLRSRFQQMAFLNKGLKISLTDLREPDLAGDEVAGDDDSTEPKHQSVTYQ 267 Query: 225 YKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNNI 280 Y GI+ +VSYL + +K + I + + IS ++AM+W Y E V F N I Sbjct: 268 YMNGIKDYVSYLVKSRKATPVEEDVIDFEAEDLKIGISAEVAMQWTTAYSEAVHTFANTI 327 Query: 281 PQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFS 340 +GGTH G R+ALT + Y K+ ++ GDD REG T+V+S+K+ P+F Sbjct: 328 STTEGGTHEEGFRAALTSLVNRYARDKNILKEKDDNLSGDDVREGLTAVVSVKLTTPQFE 387 Query: 341 SQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTR 400 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ TR Sbjct: 388 GQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPAEAKNIIQKAIEASRARIAAKKARENTR 447 Query: 401 RKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNV 460 RK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ E QAILPLRGKILN Sbjct: 448 RKSIFESAGMPDKLKDCQSSNPEECELFIVEGDSAGGSAIQGRNPETQAILPLRGKILNT 507 Query: 461 ERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTF 520 ERA D+M+ S I +LITA+G G G++ FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 508 ERASIDRMMKSDTIESLITAVGGGYGEE-FDVSKVRYHKVIIMADADVDGAHIATLNLTL 566 Query: 521 FFRQMPSLIHNGFLYIIKPPLYGITRGK-SLQYVKDEESLEDYLINQSLSEEIELFCDSK 579 FFR M +I G++Y+ PPLY + + YV + ++ L + + Sbjct: 567 FFRYMRPMITAGYVYVAMPPLYRLKWTRGDHDYVYTDRERDEKLAQGKAAGRQLPKGEGI 626 Query: 580 GVISKNDLRNFIDDALKIDKLIKDFYPNHD 609 + + Sbjct: 627 QRYKGLGEMTYQELWETTMDPEHRILKQIH 656 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 39/68 (57%), Positives = 50/68 (73%) Query: 732 KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREF 791 KG +QRYKGLGEM +LWETT++P+ R L ++ I DA+ AD+ FS LMGD+VEPRR F Sbjct: 622 KGEGIQRYKGLGEMTYQELWETTMDPEHRILKQIHIEDAAAADETFSMLMGDDVEPRRLF 681 Query: 792 IQENSLPS 799 IQ N+ Sbjct: 682 IQRNAKDV 689 >gi|218440010|ref|YP_002378339.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218172738|gb|ACK71471.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 1191 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 260/502 (51%), Positives = 354/502 (70%), Gaps = 3/502 (0%) Query: 7 NSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITV 66 S+Y A+ IQ+L+GL+ V+KRP MYIG T G GLHH++YEV+DN+IDE+L GY I V Sbjct: 2 TSNYGAEQIQVLEGLEPVRKRPGMYIGST-GPRGLHHLVYEVVDNSIDEALAGYCTHIEV 60 Query: 67 TLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 +N DGS TV+D+GRGIPTD H G SA E +MT LHAGGKF YKVSGGLHGVGVS Sbjct: 61 DINSDGSVTVTDDGRGIPTDTHPTTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVS 120 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFS-VQ 185 VVNALS W+ + + R+ N++ + G+ L + + TGT V+FLP IF+ Sbjct: 121 VVNALSEWVNVTVWRDKNVFTQRYERGVPVTALESQPDSNHSTGTSVSFLPDVQIFTGGI 180 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQ 245 +F+Y+TL RLREL++LN+ +I+ D R +PR + Y+GGI+ +V+Y+ R K+PL + Sbjct: 181 EFDYNTLAGRLRELAYLNAGARITFTDNRGEQPRVESYCYEGGIKEYVAYMCREKQPLHE 240 Query: 246 SPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYV 304 I +QG R+ I I++A++W D Y++N+L F NNI DGGTHL GL++ LTR I + Sbjct: 241 EIIYVQGERNGIYIEVALQWYIDTYNDNLLGFANNIRTIDGGTHLEGLKAVLTRTINNVA 300 Query: 305 EKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGL 364 K K ++ ++ G++ REG T V+S+K+P+P F QTK KL ++EVR +V+S V + L Sbjct: 301 RKRNKIKDNEPNLAGENVREGLTGVISVKVPEPEFEGQTKTKLGNTEVRGIVDSLVGEVL 360 Query: 365 SAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKK 424 +LE HP A I++K + A +AARRAR+L RRK VL+ + LPGKLADCSERDP + Sbjct: 361 GEYLEFHPQIADAIIEKAVQAFKAAEAARRARELVRRKSVLESSPLPGKLADCSERDPAR 420 Query: 425 SELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTG 484 SE+F+VEGDSAGGSAKQGR R +QAILPLRGKILN+E+ K+ + EI +LITALG G Sbjct: 421 SEIFIVEGDSAGGSAKQGRDRRSQAILPLRGKILNIEKTDDAKIYKNNEIQSLITALGLG 480 Query: 485 IGQDSFDINKLRYHKIIIMTDA 506 I + F+ ++LRYH+IIIM+ A Sbjct: 481 IKGEEFEASQLRYHRIIIMSVA 502 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Query: 671 VQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFS-- 728 V + F + + + I + + + L I Sbjct: 1055 VDGAHIRTLLLTFFYRYQRAIVDQGYIYIACPPLYKVERGRNHRYCYNERELQQYINELP 1114 Query: 729 -IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEP 787 S+QR+KGLGEM QLW+TT+NP+TR + +V+I DA++A++LF+ LMGD V P Sbjct: 1115 PNA--NYSIQRFKGLGEMMPQQLWDTTMNPETRMIKQVEIEDAAKAEELFTILMGDRVSP 1172 Query: 788 RREFIQENS--LPSA-LDI 803 RR+FI+ + L LDI Sbjct: 1173 RRDFIETHGPRLNLNDLDI 1191 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYL 563 TDADVDGAHIRTLLLTFF+R +++ G++YI PPLY + RG++ +Y +E L+ Y+ Sbjct: 1051 TDADVDGAHIRTLLLTFFYRYQRAIVDQGYIYIACPPLYKVERGRNHRYCYNERELQQYI 1110 Query: 564 INQSLSEE-IELFCDSKGVISKNDLRN 589 + G + L + Sbjct: 1111 NELPPNANYSIQRFKGLGEMMPQQLWD 1137 >gi|1405461|emb|CAA97606.1| GrlB [Bacillus subtilis subsp. subtilis str. 168] Length = 627 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 252/632 (39%), Positives = 371/632 (58%), Gaps = 22/632 (3%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG TD GLHH++YE++DN++DE L G+ D I V ++ D S +V D GRG+PT +H Sbjct: 1 MYIGSTDA-RGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMH- 58 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + G EVI+T LHAGGKF Q YK SGGLHGVG SVVNALS WL + I+R+G +Y+ Sbjct: 59 KLGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQR 118 Query: 150 FIN-GILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQI 208 F N G L G TGT F P +FS +N++TL RLRE +FL ++I Sbjct: 119 FENGGKPVTSLEKIGKTK-KTGTLTHFKPDPTMFSTTTYNFETLSERLRESAFLLKGLKI 177 Query: 209 SLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDG 268 LID+R+ + +Y+ GIEAFV+ +K ++ + +G +I +D A ++NDG Sbjct: 178 ELIDERNDQR--EVFYYENGIEAFVA-YLNEEKDVLSEVVSFEGEHHSIEVDFAFQFNDG 234 Query: 269 YHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTS 328 Y EN+L F NN+ KDGGTH SG ++A+TR Y K K+ +++ G D REG ++ Sbjct: 235 YSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTDIREGLSA 294 Query: 329 VLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDAS 386 ++S+++P+ +F QTK KL +SE RS V++ V++ L+ +LEE+ A ++VKK + AS Sbjct: 295 IISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLVKKAIKAS 354 Query: 387 MVRDAARRARD--LTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 R+AAR+AR+ + +K A+L GKL R+P K+EL+LVEGDSAGGSAKQGR Sbjct: 355 QAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGSAKQGRD 414 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QA+LPLRGK++N E+A+ + ++EI T+I A+G G+G D F I+ + Y KIIIMT Sbjct: 415 RRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGAD-FSIDDINYDKIIIMT 473 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLI 564 DAD DGAHI+ LLLTFF+R M LI +G ++I PPLY +++G + + +Y Sbjct: 474 DADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEII------EYAW 527 Query: 565 NQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAV----ISG 620 + ++ I + ++ + + + I+ A Sbjct: 528 SDEEMGDVLKKVGKGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 587 Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKS 652 + + + +A L+ + E Sbjct: 588 TLMGDKVEPRRKWIEKNVAFGLDEESNILENE 619 Score = 154 bits (390), Expect = 5e-35, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 5/257 (1%) Query: 543 GITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIK 602 + + + E + E L S+N +N + Sbjct: 349 KAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGGS 408 Query: 603 DFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDI 662 + + V N E + ++ ++ ++ I + N D Sbjct: 409 AKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGVGADFSIDDINYDK 468 Query: 663 LVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKI----TG 718 ++ + F + I ++ + + K +I Sbjct: 469 IIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYAWS 528 Query: 719 PCSLLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFS 778 + D + +G KG ++QRYKGLGEMNA QLWETT+NP++R+L+RVKI DA++ + + Sbjct: 529 DEEMGDVLKKVG-KGYTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVERRVT 587 Query: 779 RLMGDEVEPRREFIQEN 795 LMGD+VEPRR++I++N Sbjct: 588 TLMGDKVEPRRKWIEKN 604 >gi|160892781|ref|ZP_02073571.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50] gi|156865822|gb|EDO59253.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50] Length = 634 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 248/601 (41%), Positives = 348/601 (57%), Gaps = 22/601 (3%) Query: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68 SY A +I++LKGL+ V+ RP MYIG+T G SGL+H+I E++DN++DE L GY I V++ Sbjct: 2 SYSAKNIEVLKGLEPVRLRPGMYIGNT-GRSGLNHLIQELIDNSVDEHLAGYCKNIYVSI 60 Query: 69 NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128 N DGS TVSD+GRG+P D+H+ EGI A V+ T LHAGGKFN +YK+SGGLHGVG +VV Sbjct: 61 NEDGSATVSDDGRGVPVDIHETEGIPAERVVYTVLHAGGKFNSSTYKISGGLHGVGSAVV 120 Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGS------AGNDTGTEVTFLPSSDIF 182 NALS L + + R+G +Y S+ G+ L G+ TGT+VT P IF Sbjct: 121 NALSKKLLVEVARDGYLYTDSYEYGVPVTELTPEGNLPRTRLKEKRTGTKVTLYPDDTIF 180 Query: 183 SVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKP 242 F D + R++E ++LN + I+ +KR + + GG+ AFV + Sbjct: 181 ETVKFKADAIMQRIKETAYLNPELTITFHNKRDGKE-PVVFHQPGGLSAFVEDISEGLT- 238 Query: 243 LMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITS 302 I I G ++NI+ D+ + EN++ FTNNI +GGTH++G +S + I S Sbjct: 239 HTSPIIAISGEKENITADIVFVMTEDGEENIIGFTNNITNPEGGTHVTGFKSGFAKLINS 298 Query: 303 YVEKS-FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVN 361 Y K+ ++ G D R G +++S+K PDP+F QTK KL +++V V+ V Sbjct: 299 YARNELGLLKEKDANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVTKAVDDIVK 358 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL--PGKLADCSE 419 + L+ + + + K I + + S + L + K L+ S GKLA Sbjct: 359 EQLTVYFDRNYDVLKDICDRAVSLSK-------KKALEKSKINLNKFSFEGNGKLAKQES 411 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 D K E+F+VEGDSAGGSAK R+R+ QAILPLRGKILNVE+ K+L + EI LI Sbjct: 412 NDSSKCEIFIVEGDSAGGSAKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEIKALIN 471 Query: 480 ALGTGIGQ---DSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 A G G Q + FDINKL Y KIIIMTDADVDGAHI TLLLTFF+R P LI+ G +YI Sbjct: 472 AFGCGFMQGYGNDFDINKLNYDKIIIMTDADVDGAHIATLLLTFFYRFYPDLINEGHIYI 531 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 PPLY + GK +QY+ +E L Y + I+ + + + ++ + Sbjct: 532 AIPPLYRVGEGKHMQYLYSDEELNRYRKKHTGKFTIQRYKGLGEMDADQLYETTMNPESR 591 Query: 597 I 597 + Sbjct: 592 V 592 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 120/327 (36%), Gaps = 31/327 (9%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPL----------------YGITRGK 548 DA++ GA IR+ + + P G Y Sbjct: 311 DANLSGADIRSGMQAIISVKHPDPQFEGQTKTKLSNTDVTKAVDDIVKEQLTVYFDRNYD 370 Query: 549 SLQYVKDEE---SLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKIDKLIKDFY 605 L+ + D S + L ++ F + + + + + ++ Sbjct: 371 VLKDICDRAVSLSKKKALEKSKINLNKFSFEGNGKLAKQESNDSSKCEIFIVEGDSAGGS 430 Query: 606 PNHDKTFIEQAVI---SGVFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSIN---- 658 + QA++ + N E V +++ +N + + + Sbjct: 431 AKTARNRKYQAILPLRGKILNVEKKTVAKVLENAEIKALINAFGCGFMQGYGNDFDINKL 490 Query: 659 NSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITG 718 N D ++ V + F + Y + + + L + G ++ Sbjct: 491 NYDKIIIMTDADVDGAHIATLLLTFFYRF-YPDLINEGHIYIAIPPLYRVGEGKHMQYLY 549 Query: 719 PCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 L+ G+ ++QRYKGLGEM+A QL+ETT+NP++R L +V I +A+ L Sbjct: 550 SDEELNRYRKKHTGK--FTIQRYKGLGEMDADQLYETTMNPESRVLKQVSINSIVEANKL 607 Query: 777 FSRLMGDEVEPRREFIQENSLPSALDI 803 LMG EV PRRE+I+ +S + LDI Sbjct: 608 TQTLMGTEVAPRREYIETHSTDAVLDI 634 >gi|66009716|gb|AAY42699.1| GyrB [Burkholderia anthina] Length = 643 Score = 524 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 288/647 (44%), Positives = 404/647 (62%), Gaps = 20/647 (3%) Query: 111 QKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGIL------------DNP 158 Q SYKVSGGLHGVGVS VNALSSWL+L ++R+G M F G+ +P Sbjct: 1 QNSYKVSGGLHGVGVSCVNALSSWLRLTVRRDGKKRFMEFHRGVAQERVLEMVDGVEVSP 60 Query: 159 LVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEP 218 ++VTG + GTEV F+ IF +++YD L R+RELSFLN+ V+I L D RS + Sbjct: 61 MLVTGDTE-NRGTEVHFMADPTIFGTVEYHYDILAKRMRELSFLNNGVRIRLTDLRSGKE 119 Query: 219 REITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTN 278 + GG++ FV ++++ K L + G +D + +++AM+WND Y+ENVLCFTN Sbjct: 120 --DDFAFAGGVKGFVEFINKTKTNLHPTVFFANGEKDGVGVEVAMQWNDSYNENVLCFTN 177 Query: 279 NIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPR 338 NIPQ+DGGTHL+GLR+A+TR I Y+ + +KK K GDD REG + VLS+K+P+P+ Sbjct: 178 NIPQRDGGTHLTGLRAAMTRVINKYITDNEIAKKAKVETTGDDMREGLSCVLSVKVPEPK 237 Query: 339 FSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDL 398 FSSQTK+KLVSSEVR+ VE V L +L E P++AKII K+++A+ RDAAR+AR++ Sbjct: 238 FSSQTKDKLVSSEVRAPVEEVVAKALEEFLLETPIDAKIICGKIVEAARARDAARKAREM 297 Query: 399 TRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKIL 458 TRRKGVLD LPGKLADC E+DP K E+++VEGDSAGGSAKQGR R+ QAILPLRGK+L Sbjct: 298 TRRKGVLDGVGLPGKLADCQEKDPAKCEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVL 357 Query: 459 NVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLL 518 NVE+AR+DK+LSS++I TL+TALG GIG++ +++ KLRYH+IIIMTDADVDGAHIRTLLL Sbjct: 358 NVEKARYDKLLSSEQIVTLVTALGCGIGKEDYNLEKLRYHRIIIMTDADVDGAHIRTLLL 417 Query: 519 TFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDS 578 TF +RQMP +I G++YI +PPLY I GK +Y+KD+ L +++ +L + ++ Sbjct: 418 TFLYRQMPDMIERGYVYIAQPPLYKIKAGKDERYLKDDVELNAHMLRLALQGSELVPGEN 477 Query: 579 KGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 IS + L L +I+ +D +E AV+ GV S + + A L Sbjct: 478 AAAISGDALGELARSYLLSKSVIERLSRLYDPAALE-AVMDGVVIDLSTEASTEASAKAL 536 Query: 639 ANRLNFIAEKSEKS----WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFS 694 L+ A K+E + + V+R G V++ + + + Sbjct: 537 HAALHDEALKNEVRVVPAYDAVREQRSLHVERTHHGNVRVSVIDQEFQHTADYQQLVTTA 596 Query: 695 NRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKG 741 N + + + + S + + + + +S QRYKG Sbjct: 597 NTFKGLIGEGAVIKRGERSMAVADFKSAMKWLLADAERNVSKQRYKG 643 >gi|186701799|ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701080|gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 642 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD ++I+IL+GL+AV+KRP MYIG T +GLHH+I+E++DN+IDE + Sbjct: 1 MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ D S +V D+GRGIP D++ + IS E ++T LHAGGKF++ +YK +GGL Sbjct: 55 AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL + R+ IY+ FIN G +D L V G+ TGT + FLP Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN + ++ RL E +FL ++I DK + + G+ F+ +++ Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK I + + + I +++A +++D +E ++ F N++ +GG H + ++ALT Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + +Y K K+ +++ GDD REG +SV+S+++P+ + QTK KL + E V+ Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + D S WLEE+ +A +V + + A + AA+RAR+ T++ K + + + GKL Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 +DP +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR +L ++EI + Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M LI NG +YI Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +T + ++ + +E + + G ++ + L Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + I + L +K + LD + +K +QRYKGLGEMNA QL Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +ETT++P+ R LL++ I D QA+ + LMG++V R+++I N Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625 >gi|183508547|ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182675987|gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 642 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 241/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD ++I+IL+GL+AV+KRP MYIG T +GLHH+I+E++DN+IDE + Sbjct: 1 MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ D S +V D+GRGIP D++ + IS E ++T LHAGGKF++ +YK +GGL Sbjct: 55 AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDEGAYKTAGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL + R+ IY+ FIN G +D L V G+ TGT + FLP Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHIDQSLKVIGTTK-KTGTLIHFLPDP 173 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN + ++ RL E +FL ++I DK + + G+ F+ +++ Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK I + + + I +++A +++D +E ++ F N++ +GG H + ++ALT Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + +Y K K+ +++ GDD REG +SV+S+++P+ + QTK KL + E V+ Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + D S WLEE+ +A +V + + A + AA+RAR+ T++ K + + + GKL Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 +DP +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR +L ++EI + Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M LI NG +YI Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +T + ++ + +E + + G ++ + L Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + I + L +K + LD + +K +QRYKGLGEMNA QL Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +ETT++P+ R LL++ I D QA+ + LMG++V R+++I N Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625 >gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius] Length = 611 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 279/563 (49%), Positives = 381/563 (67%), Gaps = 6/563 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T E GLHH+++E++DN+IDE+L GYAD I V + D V+DNGRGIP D+ + Sbjct: 1 MYIGSTS-ERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQE 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS L++ + R+G I+ + Sbjct: 60 KMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSETLEVYVHRDGRIHHQA 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQI 208 + G+ L G + TGT + F IF +NY+TLQ R+REL+FLN ++I Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178 Query: 209 SLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 +L D+R E Y+GGI+++V ++ +K+PL PI + +RD+I +++A+++N Sbjct: 179 TLTDERDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEVEIALQYNS 238 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 G+ N+L + NNI +GGTH G + ALTR + +Y +S K+DK + G+D REG T Sbjct: 239 GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLT 298 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+SIK DP+F QTK KL +SEVR +V+ ++ +L EHP A+IIV+K + AS Sbjct: 299 AVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASR 358 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R AA++AR++TRRK LDI+SLPGKLADCS +DP +SE+FLVEGDSAGGS K GR Sbjct: 359 ARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRT 418 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPLRGKILNVE+AR DK+L++ EI ++TA GTGIG + FDI+K RYHKI+IMTDAD Sbjct: 419 QAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYHKIVIMTDAD 477 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLTFF+R M LI G++YI +PPLY +T+GK YV ++ L+ + Sbjct: 478 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKLN 537 Query: 568 LSE-EIELFCDSKGVISKNDLRN 589 + G ++ + L Sbjct: 538 PTPKWSIARYKGLGEMNADQLWE 560 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 433 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 492 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740 R IE Y+ I L K + LD + K S+ RYK Sbjct: 493 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 548 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 GLGEMNA QLWETT+NP+ R++L+V + DA +AD F LMGD VE RR+FI++N++ + Sbjct: 549 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 608 Query: 801 LD 802 LD Sbjct: 609 LD 610 >gi|229818508|ref|YP_002880034.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333] gi|229564421|gb|ACQ78272.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333] Length = 685 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 278/606 (45%), Positives = 376/606 (62%), Gaps = 31/606 (5%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + N S YDA +I +L+GL+AV+KRP MYIG T GE GLHH++ EV+DN++DE+L GYA Sbjct: 14 TTNGSASGYDASNITVLEGLEAVRKRPGMYIGST-GERGLHHLVSEVVDNSVDEALAGYA 72 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLH 121 I VTL DG V D+GRGIP D+ + EG A EV++T LHAGGKF Y VSGGLH Sbjct: 73 TRIDVTLTEDGGVRVVDDGRGIPVDIVESEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLH 132 Query: 122 GVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDI 181 GVGVSVVNALS L++ ++ +G+++ S+ +G+ D PL G A + TGT VTF P+ DI Sbjct: 133 GVGVSVVNALSHRLEVEVRVQGSVWRQSYTDGVPDAPLER-GEATDVTGTTVTFWPNGDI 191 Query: 182 FSVQDFNYDTLQHRLRELSFLNSSVQISLIDKR------------------------SPE 217 F F+++TL+ R ++ +FLN ++ISL D+R Sbjct: 192 FETTVFDFETLRGRFQQYAFLNKGLEISLTDERRESGTGDEVAGEHADEETSVQLRDESH 251 Query: 218 PREITMFYKGGIEAFVSYLDRHK--KPLMQSPIRIQGS--RDNISIDLAMRWNDGYHENV 273 R +T Y G+ +V +++ K + I + IS+++AM+W Y E+V Sbjct: 252 ERTVTYRYDDGLVDYVRHINAAKRADLVHPEIIDFEAEDVERTISLEIAMQWTSAYSESV 311 Query: 274 LCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIK 333 + N I +GGTH G R+ALT + Y + K+ ++ G+D REG T+VLSIK Sbjct: 312 HTYANTINTSEGGTHEEGFRAALTTLVNRYAREKNLLKEKDDNLTGEDVREGLTAVLSIK 371 Query: 334 MPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAAR 393 + +P+F QTK KL ++E R+ + V D L WL HP EA+ IV+K + AS R AAR Sbjct: 372 LGEPQFEGQTKTKLGNTEARTFTQKVVFDQLGDWLASHPNEAREIVRKAIQASAARMAAR 431 Query: 394 RARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPL 453 +AR+ TRRKG+L+ +PGKL DCS RD SE+F+VEGDSAGGSA QGR+ E QAILP+ Sbjct: 432 KAREATRRKGLLEGVGMPGKLKDCSSRDASVSEVFIVEGDSAGGSAVQGRNPETQAILPI 491 Query: 454 RGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHI 513 RGKILNVE+AR DK L +QE+ LITA GTGIG+D FD++KLRYHKI++M DADVDG HI Sbjct: 492 RGKILNVEKARLDKALGNQEVQALITAFGTGIGED-FDLSKLRYHKIVLMADADVDGQHI 550 Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 TLLLT FR M L+ +G +Y+ PPLY + + D L+ + Sbjct: 551 CTLLLTLLFRYMRPLVEHGHVYLAMPPLYKLKWTNGPHDYVYSDRERDALLEAGRAAGRR 610 Query: 574 LFCDSK 579 L D Sbjct: 611 LPKDGG 616 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRK----GISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 +LL+ + GR+ G +QRYKGLGEM+ +LWETT++PDTR+L +V I +A+ AD++ Sbjct: 599 ALLEAGRAAGRRLPKDG-GIQRYKGLGEMDYRELWETTMDPDTRTLKQVTIGEAAMADEI 657 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 F+ LMG++VE RR FIQ N+ LDI Sbjct: 658 FAVLMGEDVESRRSFIQRNARDVRFLDI 685 >gi|182418445|ref|ZP_02949739.1| DNA gyrase subunit B [Clostridium butyricum 5521] gi|237666793|ref|ZP_04526778.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377827|gb|EDT75371.1| DNA gyrase subunit B [Clostridium butyricum 5521] gi|237657992|gb|EEP55547.1| DNA gyrase subunit B [Clostridium butyricum E4 str. BoNT E BL5262] Length = 649 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 229/602 (38%), Positives = 345/602 (57%), Gaps = 21/602 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 N++YD + L+ L+ V+ RP MYIG T G GLHH I+E++DN+IDE GY + +T Sbjct: 5 NNNTYDVTDLTSLEKLEPVRVRPGMYIGST-GSKGLHHCIWEIIDNSIDEIANGYGNKVT 63 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGV 125 +TLN D S T+ DNGRGIPT +H + S E++ T LH GGKF+ K+YK SGGLHGVG Sbjct: 64 ITLNEDKSVTIIDNGRGIPTGIHPIKKKSGVEMVYTELHTGGKFDNKNYKTSGGLHGVGA 123 Query: 126 SVVNALSSWLKLRIKREGNIYEMSFIN-----------GILDNPLVVTGSAGNDTGTEVT 174 +VVNALS W+++ + + G IY F G L V G + TGT++T Sbjct: 124 AVVNALSKWVEVEVYQNGKIYRQRFEYAFDKELKRNMPGTPVTALEVIGKT-DKTGTKIT 182 Query: 175 FLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVS 234 F P +IFS DF +D + RL+EL+F N +++ L+D R + + + G+ F+ Sbjct: 183 FRPDEEIFSTIDFKFDIIDSRLQELAFQNKGIRLELVDTRKGQEASKEYYSENGLLDFIK 242 Query: 235 YLDRHKKPLMQSPIRIQGSRDNISI----DLAMRWNDGYHENVLCFTNNIPQKDGGTHLS 290 YL+ K PL + PI G R +I ++ +++ D E + + NNIP + GTH + Sbjct: 243 YLNESKTPLHEIPIIFDGERTVSNIQMYGEICIQFTDSTTEYIASYVNNIPTTEAGTHET 302 Query: 291 GLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSS 350 G ++ +TR + +K K+ + GDD REG T+++ IK+ +P F QTK KL +S Sbjct: 303 GFKTGMTRAFKEWAKKLGLVKEKDKEFEGDDLREGMTAIVRIKITNPVFEGQTKTKLGNS 362 Query: 351 EVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASL 410 E +++ V S W+E++ A ++ L+A+ RD ++ D R+K A L Sbjct: 363 EAYTMMNDLVYTKFSEWIEDNKELATFVINNALEAAKRRDKIKKINDAERKKIGKGTAPL 422 Query: 411 PGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLS 470 GK+A C+ +D +E +VEGDSAGGSAKQ R R Q I+P +GKI+N E+ + + +L+ Sbjct: 423 AGKVAVCTMKDKTVNEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLA 482 Query: 471 SQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIH 530 S+E+ TA+GTG D++ L+Y KIIIM+DADVDG HIRTL +T+ +R M LI Sbjct: 483 SEELKIFNTAVGTGT-LDNYKEEDLKYDKIIIMSDADVDGYHIRTLWMTYIYRYMRPLIA 541 Query: 531 NGFLYIIKPPLYGITRGKSLQYVKDEESLE---DYLINQSLSEEIELFCDSKGVISKNDL 587 NG LY+ +PPLY + R + + + D + + + G ++ + L Sbjct: 542 NGHLYLAQPPLYKVYRETKGKSIVKYAYSDDDLDKVKKEVGKGALIQRYKGLGEMNPDQL 601 Query: 588 RN 589 Sbjct: 602 WE 603 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 52/69 (75%) Query: 723 LDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMG 782 LD + KG +QRYKGLGEMN QLWETTLNP++R+LLRV I DA++A+ + S LMG Sbjct: 574 LDKVKKEVGKGALIQRYKGLGEMNPDQLWETTLNPESRTLLRVNIEDAAKAEKMVSLLMG 633 Query: 783 DEVEPRREF 791 D VEPR+ + Sbjct: 634 DVVEPRKNY 642 >gi|291320111|ref|YP_003515369.1| topoisomerase IV subunit B [Mycoplasma agalactiae] gi|290752440|emb|CBH40411.1| Topoisomerase IV subunit B [Mycoplasma agalactiae] Length = 641 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 280/652 (42%), Positives = 381/652 (58%), Gaps = 24/652 (3%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + NS+YDA SIQ LKGL+AV+KRP MYIG TD +GLHH+I+E++DN+IDE+L G A+ I Sbjct: 4 MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGEANEI 62 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L DGS VSDNGRGIP G SA E++ T LHAGGKFN+ +YK SGGLHGVG Sbjct: 63 IVILKKDGSVIVSDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS+ LK + R+ +IYE F NG + GS N GT + F P+ +IF Sbjct: 122 SSVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST-NKRGTSIQFWPNYEIFK 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN++T+ RLRE SFL S++ I LID++S R Y GI+AFV +++ K L Sbjct: 181 KAKFNFETIAERLRESSFLISNLSIKLIDEQSE--RSEEFKYSNGIKAFVEFINDSKTAL 238 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + + I I+ ++ DG++E +L F NN+ +DGGTH GL+SA+T+ + Sbjct: 239 F-NVYSFKQVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDF 297 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K + G+D REG T VLS+K+P+ F SQTK+KL + E +S VE V+ Sbjct: 298 ALDEKVLK-GKNTFDGEDVREGLTVVLSVKIPEKYLEFVSQTKDKLGTPEAKSAVEEAVS 356 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIA-SLPGKLADCSE 419 L W+ E+ AK I+ K+ AS R++AR+AR R+ K L L GKL Sbjct: 357 KNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQILSGKLTPAQT 416 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+ ELFLVEGDSAGGSAK GR R QAILPLRGK++N E+AR +L ++EI T+I Sbjct: 417 KNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDILKNEEINTIIN 476 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG FDINK++Y K+IIMTDAD DGAHI+ LLLTFFFR M LI G +YI P Sbjct: 477 AIGAGIG-QDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIEEGKVYIALP 535 Query: 540 PLYG--ITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALKI 597 PL+ I + K +E+ L+ + G ++ + L Sbjct: 536 PLFKLTINKAKKEILYAWDENELKELLQTKMKNAEVQRYKGLGEMNADQLW--------- 586 Query: 598 DKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKS 649 + + + I+ A ++ + S + +NF E Sbjct: 587 ETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKNVNFTLEDD 638 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 11/288 (3%) Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 ++ + + + + I I K L I R + + LE +L E+ Sbjct: 348 KSAVEEAVSKNLKTWITENK-QIAKKILDKIKRASDSRESARKARLEARKTKSALKEKQI 406 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633 L +KN + + + V N E + I++ Sbjct: 407 LSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRRYQAILPLRGKVINTEKARLIDIL 466 Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIF 693 ++ +N I + + + D ++ + F F + I Sbjct: 467 KNEEINTIINAIGAGIGQDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRRLIE 526 Query: 694 SNRIEENYLTILSLICNGDKIKI------TGPCSLLDTIFSIGRKGISMQRYKGLGEMNA 747 ++ + L N K +I LL T +QRYKGLGEMNA Sbjct: 527 EGKVYIALPPLFKLTINKAKKEILYAWDENELKELLQTKMKNAE----VQRYKGLGEMNA 582 Query: 748 SQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 QLWETT+NP+TR+L++V+I DA+ A+ S LMGD VE R+E+I +N Sbjct: 583 DQLWETTMNPETRTLIQVRIQDAALAERRVSTLMGDNVESRKEWINKN 630 >gi|56696142|ref|YP_166498.1| DNA topoisomerase IV subunit B [Ruegeria pomeroyi DSS-3] gi|56677879|gb|AAV94545.1| DNA topoisomerase IV, B subunit [Ruegeria pomeroyi DSS-3] Length = 652 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 246/655 (37%), Positives = 350/655 (53%), Gaps = 22/655 (3%) Query: 1 MSDNI----QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M +++ Q ++YDA SI++L+GL+ V+KRP MYIG TD E LHHM+ EVLDN++DE+ Sbjct: 1 MPEDLLSGAQTATYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHMVAEVLDNSMDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115 + G+A+ I V L+ D + TV DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y+ Sbjct: 60 VAGFANRIEVELHADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQ 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG SVVNALS + +++ R+ +YE F G+ P+ G+A N GT VTF Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAPNRRGTTVTF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233 +IF F L +R ++L S V+I P E T + GG+ ++ Sbjct: 180 HADEEIFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYL 239 Query: 234 SYLDRHKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 + P + ++ A+ W + + N +P +GGTH Sbjct: 240 KETLGKASTYAEQPFAGTVDFTEKFNTPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 +G SA+ + I +Y E S K + DD G +++S + +P F QTK++L Sbjct: 300 EAGFWSAILKGIRAYGE--LISNKKAAQITRDDLLTGGCALVSCFIREPEFVGQTKDRLA 357 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 + E + +VE V D WL A I+ ++ + R R+ ++ T+RK Sbjct: 358 TVEAQRLVEGAVRDHFDNWLAADTKSAGAILDFLVLRAEERIRRRQEKE-TQRKTATKKL 416 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 LPGKL DCS + +ELF+VEGDSAGGSAK R R+ QA+LPLRGKILNV A K+ Sbjct: 417 RLPGKLVDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKL 476 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 S+QEI L ALG G+G F+++ LRY KIIIMTDADVDGAHI LL+TFFF QM + Sbjct: 477 GSNQEISDLTQALGVGLG-TRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPM 535 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586 I G LY+ PPLY +T+G Y DE +++L + G + D Sbjct: 536 IDTGHLYLACPPLYRLTQGAKRVYCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKD 595 Query: 587 LRNFI---DDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L++ + I I + P +E+ + + N +L Sbjct: 596 LKDTTMNPETRKLIRVTIDEDEPGETGDLVERLMGKKPELRFQYIQENARFVEEL 650 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ D ++ V + F F I + + + L Sbjct: 496 RFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTGHLYLACPPLYRLTQGA 555 Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++ + + +G KG I + R+KGLGEM+A L +TT+NP+TR L+RV I + Sbjct: 556 KRVYCLDEAERDEWLAKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPETRKLIRVTIDE 615 Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R ++IQEN+ LD+ Sbjct: 616 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 652 >gi|309801982|ref|ZP_07696096.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022] gi|308221430|gb|EFO77728.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022] Length = 698 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 33 DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 91 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 92 HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 151 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179 VG+SVVNALS+ + + ++R+G + ++++ L G G TGT VTF Sbjct: 152 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 210 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223 IF ++++TL++R ++++FLN +++SL D+ + + +T Sbjct: 211 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 270 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + I + + IS ++AM+W Y E V F N Sbjct: 271 QYNEGIKDYVGYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 330 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT I Y + K ++ GDD REG T+V+S+K+ P+F Sbjct: 331 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 390 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 391 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 450 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 451 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 510 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 511 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 569 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 570 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 629 Query: 579 KGVISK 584 Sbjct: 630 IQRYKG 635 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V+I DA+ AD+ Sbjct: 611 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 670 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 671 FSMLMGDEVEPRRLFIQRNANKV 693 >gi|306823992|ref|ZP_07457366.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium dentium ATCC 27679] gi|304552990|gb|EFM40903.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium dentium ATCC 27679] Length = 704 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 39 DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 98 HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179 VG+SVVNALS+ + + ++R+G + ++++ L G G TGT VTF Sbjct: 158 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 216 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223 IF ++++TL++R ++++FLN +++SL D+ + + +T Sbjct: 217 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 276 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + I + + IS ++AM+W Y E V F N Sbjct: 277 QYNEGIKDYVGYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 336 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT I Y + K ++ GDD REG T+V+S+K+ P+F Sbjct: 337 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 396 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 397 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 456 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 457 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 516 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 517 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 575 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 576 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 635 Query: 579 KGVISK 584 Sbjct: 636 IQRYKG 641 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V+I DA+ AD+ Sbjct: 617 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 676 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 677 FSMLMGDEVEPRRLFIQRNANKV 699 >gi|171741730|ref|ZP_02917537.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC 27678] gi|283454964|ref|YP_003359528.1| DNA gyrase [Bifidobacterium dentium Bd1] gi|171277344|gb|EDT45005.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC 27678] gi|283101598|gb|ADB08704.1| DNA gyrase [Bifidobacterium dentium Bd1] Length = 704 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 256/606 (42%), Positives = 366/606 (60%), Gaps = 27/606 (4%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 D++ YDA +++L+GL+AV+ RP MYIG T G GLHH++YE++DN++DE+L GYA Sbjct: 39 DSLSPEHYDASDLRVLEGLEAVRIRPGMYIGST-GPRGLHHLVYEIVDNSVDEALAGYAS 97 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHG 122 I VT+ DG V D+GRGIP D EG+S E +MT+LHAGGKF Y VSGGLHG Sbjct: 98 HIEVTILPDGGVRVVDDGRGIPVDEVPGEGVSGVETVMTKLHAGGKFGGGGYAVSGGLHG 157 Query: 123 VGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSA---GNDTGTEVTFLPSS 179 VG+SVVNALS+ + + ++R+G + ++++ L G G TGT VTF Sbjct: 158 VGISVVNALSTRVDIEVRRQGFHWTQTYVDQKPTARLAK-GEPMAEGESTGTSVTFWADG 216 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLI----------------DKRSPEPREITM 223 IF ++++TL++R ++++FLN +++SL D+ + + +T Sbjct: 217 KIFETTTYDFETLRNRFQQMAFLNKGLKLSLTDLREPDQAGDEVAGELDETETKHQTVTY 276 Query: 224 FYKGGIEAFVSYLDRHKKPLM--QSPIRIQGS--RDNISIDLAMRWNDGYHENVLCFTNN 279 Y GI+ +V YL + +K + I + + IS ++AM+W Y E V F N Sbjct: 277 QYNEGIKDYVDYLVKSRKATPVEEDVIDFEAEDLKIGISAEIAMQWTTAYSEAVHTFANT 336 Query: 280 IPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRF 339 I +GGTH G R+ALT I Y + K ++ GDD REG T+V+S+K+ P+F Sbjct: 337 ISTTEGGTHEEGFRAALTSLINRYAREKNILKDKDENLSGDDVREGLTAVVSVKLTTPQF 396 Query: 340 SSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLT 399 QTK KL +SE ++ V+ + D L W + HP EAK I++K ++AS R AA++AR+ T Sbjct: 397 EGQTKTKLGNSEAKTFVQRVMTDKLGDWFDAHPSEAKNIIQKAIEASRARIAAKKARENT 456 Query: 400 RRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILN 459 RRK + + A +P KL DC +P++ ELF+VEGDSAGGSA QGR+ QAILPLRGKILN Sbjct: 457 RRKSIFESAGMPDKLKDCQSNNPEECELFIVEGDSAGGSAIQGRNPITQAILPLRGKILN 516 Query: 460 VERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519 ERA D+M+ S+ I +LITA+G G G+D FD++K+RYHK+IIM DADVDGAHI TL LT Sbjct: 517 TERASLDRMMKSETIESLITAVGGGYGED-FDLSKVRYHKVIIMADADVDGAHIATLNLT 575 Query: 520 FFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQ-YVKDEESLEDYLINQSLSEEIELFCDS 578 FFR M +I G++Y+ PPLY + K +V + + L + + Sbjct: 576 LFFRYMRPMITAGYVYVAMPPLYRLKWTKGAHDFVYTDAERDRVLAEGKAAGRQLPKGEG 635 Query: 579 KGVISK 584 Sbjct: 636 IQRYKG 641 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 7/83 (8%) Query: 724 DTIFSIGR-------KGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 D + + G+ KG +QRYKGLGEM+ +LWETT++P+ R L +V+I DA+ AD+ Sbjct: 617 DRVLAEGKAAGRQLPKGEGIQRYKGLGEMSYQELWETTMDPEHRILKQVQIEDAAAADET 676 Query: 777 FSRLMGDEVEPRREFIQENSLPS 799 FS LMGDEVEPRR FIQ N+ Sbjct: 677 FSMLMGDEVEPRRLFIQRNANKV 699 >gi|71725922|gb|AAZ39079.1| gyrase subunit B [Exiguobacterium antarcticum] Length = 513 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 268/516 (51%), Positives = 365/516 (70%), Gaps = 4/516 (0%) Query: 26 KRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPT 85 KRP MYIG T GLHH+++E++DN+IDE+L GY D I VT+ S V DNGRGIP Sbjct: 1 KRPGMYIGST-ASKGLHHLVWEIVDNSIDEALAGYCDTIKVTIESGNSILVEDNGRGIPV 59 Query: 86 DLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNI 145 D+ ++ G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS+ L++ +KR + Sbjct: 60 DIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTKLEVFVKRNEKL 119 Query: 146 YEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-DFNYDTLQHRLRELSFLNS 204 Y ++ G+ L V G +TGT + F P +IF +++YD L RLREL+FLN Sbjct: 120 YYQAYHRGVPAEDLAVIG-TSEETGTMIRFFPDDEIFQETLEYDYDLLATRLRELAFLNK 178 Query: 205 SVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMR 264 + I + D RS EP + Y+GGI+++V +L+R K+ + + P+ + G+RD I +++A++ Sbjct: 179 GLTIQITDDRSDEPIMRSFHYEGGIKSYVEHLNRSKEVVHEEPVYVHGNRDGIEVEVALQ 238 Query: 265 WNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCRE 324 +NDG+ N+ FTNNIP +GGTH +G ++ALTR + Y +K K ++ G+D RE Sbjct: 239 YNDGFAANIYSFTNNIPTHEGGTHETGFKTALTRVVNDYAKKFGLMKDADGTLSGEDVRE 298 Query: 325 GFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLD 384 G +++SIK P+P+F QTK KL +S+ R+ ++ + ++ E+P A+ IV+K + Sbjct: 299 GMIAIVSIKHPNPQFEGQTKTKLGNSDARTATDTLFSSAFEQFMMENPTSARAIVEKGMM 358 Query: 385 ASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRS 444 AS R AA+RAR+LTRRKGVL+++SLPGKLADCS RD SE+++VEGDSAGGSAK GR Sbjct: 359 ASRARMAAKRARELTRRKGVLEVSSLPGKLADCSSRDATISEIYIVEGDSAGGSAKSGRD 418 Query: 445 RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMT 504 R QAILP+RGKILNVE+AR DK+L S EI T+ITALGT IG + F+I K RYHK+IIMT Sbjct: 419 RHFQAILPIRGKILNVEKARLDKILGSNEIRTIITALGTSIGSE-FNIEKARYHKVIIMT 477 Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPP 540 DADVDGAHIRTLLLTFF+R M L+ +G++YI +PP Sbjct: 478 DADVDGAHIRTLLLTFFYRYMRPLVEHGYVYIAQPP 513 >gi|313678724|ref|YP_004056464.1| DNA topoisomerase IV subunit B [Mycoplasma bovis PG45] gi|312950293|gb|ADR24888.1| DNA topoisomerase IV, B subunit [Mycoplasma bovis PG45] Length = 638 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 271/593 (45%), Positives = 368/593 (62%), Gaps = 17/593 (2%) Query: 5 IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADII 64 + NS+YDA SIQ LKGL+AV+KRP MYIG TD +GLHH+I+E++DN+IDE+L G A+ I Sbjct: 1 MSNSNYDASSIQQLKGLEAVRKRPGMYIGSTD-VNGLHHLIWEIVDNSIDEALAGEANEI 59 Query: 65 TVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L DGS VSDNGRGIP G SA E++ T LHAGGKFN+ +YK SGGLHGVG Sbjct: 60 AVILKNDGSVVVSDNGRGIPVGKTPS-GKSAVELVFTELHAGGKFNEGAYKTSGGLHGVG 118 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGIL-DNPLVVTGSAGNDTGTEVTFLPSSDIFS 183 SVVNALS+ LK + R+ +IYE F NG + GS N GT + F P+ +IF Sbjct: 119 SSVVNALSNKLKCLVYRDKHIYETIFENGDNIVQKTHIIGST-NKRGTLIQFWPNYEIFK 177 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 FN++T+ RLRE SFL S++ I L+D++S + Y GI+AFV +++ K L Sbjct: 178 KAKFNFETIAERLRESSFLISNLSIKLLDEQSGKS--EEFKYSNGIKAFVEFINDSKTAL 235 Query: 244 MQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSY 303 + + + I I+ ++ DG++E +L F NN+ +DGGTH GL+SA+T+ + Sbjct: 236 F-NVYSFKTVVNEIEIECGFQYTDGFNETILSFVNNVKTRDGGTHEIGLKSAITKTFNDF 294 Query: 304 VEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVESFVN 361 K K + G+D REG T VLS+K+P+ F SQTK+KL + E +S VE V+ Sbjct: 295 ALDEKVLK-GKNTFDGEDVREGLTVVLSVKIPEKFLEFVSQTKDKLGTPEAKSAVEEAVS 353 Query: 362 DGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLP--GKLADCSE 419 L W+ E+ AK I+ K+ AS R++AR+AR R+ GKL Sbjct: 354 KNLKTWITENKQIAKKILDKIKRASDSRESARKARLEARKTKSALKERQILSGKLTPAQT 413 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 ++ K+ ELFLVEGDSAGGSAK GR R+ QAILPLRGK++N E+AR +L ++EI T+I Sbjct: 414 KNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDILKNEEINTIIN 473 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 A+G GIG FDINK++Y K+IIMTDAD DGAHI+ LLLTFFFR M LI G +YI P Sbjct: 474 AIGAGIG-VDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIEEGKVYIALP 532 Query: 540 PLYGI---TRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PL+ + K + Y DE+ L++ L+ + G ++ + L Sbjct: 533 PLFKLSINKAQKKILYAWDEDELKE-LLQSKMKGAEVQRYKGLGEMNADQLWE 584 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 70/284 (24%), Positives = 108/284 (38%), Gaps = 3/284 (1%) Query: 514 RTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIE 573 ++ + + + + I I K L I R + + LE +L E Sbjct: 345 KSAVEEAVSKNLKTWITENK-QIAKKILDKIKRASDSRESARKARLEARKTKSALKERQI 403 Query: 574 LFCDSKGVISKNDLRNFIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVS 633 L +KN + K + V N E + I++ Sbjct: 404 LSGKLTPAQTKNVKEKELFLVEGDSAGGSAKSGRDRKFQAILPLRGKVINTEKARLIDIL 463 Query: 634 LASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQ--EQFVLEGSSIFSFGSKYKR 691 ++ +N I + + D ++ +L + F K Sbjct: 464 KNEEINTIINAIGAGIGVDFDINKIQYDKVIIMTDADTDGAHIQILLLTFFFRHMRKLIE 523 Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSIGRKGISMQRYKGLGEMNASQLW 751 I L LS+ KI L + KG +QRYKGLGEMNA QLW Sbjct: 524 EGKVYIALPPLFKLSINKAQKKILYAWDEDELKELLQSKMKGAEVQRYKGLGEMNADQLW 583 Query: 752 ETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 ETT+NP TR+L++V+I DA+ A+ S LMGD V+ R+E+I +N Sbjct: 584 ETTMNPKTRTLIQVRIQDAALAERRVSTLMGDNVDSRKEWINKN 627 >gi|13358029|ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761866|ref|YP_001752551.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11270883|pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma urealyticum gi|6899460|gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827443|gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 642 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 240/593 (40%), Positives = 364/593 (61%), Gaps = 15/593 (2%) Query: 1 MSDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGY 60 M++ YD ++I+IL+GL+AV+KRP MYIG T +GLHH+I+E++DN+IDE + Sbjct: 1 MANK-----YDGNAIKILEGLEAVRKRPGMYIGSTSS-TGLHHLIWEIVDNSIDEVMNAN 54 Query: 61 ADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 A I V L+ D S +V D+GRGIP D++ + IS E ++T LHAGGKF++ +YK +GGL Sbjct: 55 AKNINVILHEDNSISVLDDGRGIPVDINSQTKISTVETVLTVLHAGGKFDESAYKTAGGL 114 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFIN-GILDNPLVVTGSAGNDTGTEVTFLPSS 179 HGVG SVVNALSSWL + R+ IY+ FIN G ++ L V G+ TGT + FLP Sbjct: 115 HGVGSSVVNALSSWLICEVYRDQKIYQAKFINGGHINQSLKVIGTTK-KTGTLIHFLPDP 173 Query: 180 DIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRH 239 IF FN + ++ RL E +FL ++I DK + + G+ F+ +++ Sbjct: 174 LIFKNLVFNPNIIKERLHESTFLIKDLKIIFEDKINKKK--YEFINNQGLIDFIKFINEA 231 Query: 240 KKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQ 299 KK I + + + I +++A +++D +E ++ F N++ +GG H + ++ALT Sbjct: 232 KKT-FSDVIYFRSNINKIDVEIAFQYSDQNNEIMVSFANSVKTSEGGVHENAFKNALTSV 290 Query: 300 ITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDP--RFSSQTKEKLVSSEVRSVVE 357 + +Y K K+ +++ GDD REG +SV+S+++P+ + QTK KL + E V+ Sbjct: 291 VNNYARKHNLLKEKDKNLEGDDIREGLSSVISLRIPESLISYEGQTKNKLFTPEANEAVK 350 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRR-KGVLDIASLPGKLAD 416 + D S WLEE+ +A +V + + A + AA+RAR+ T++ K + + + GKL Sbjct: 351 KTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREETKKVKKIKEERGMGGKLTP 410 Query: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476 +DP +ELFLVEGDSAGGSAK GR+++ QAILPLRGK+LNV +AR +L ++EI + Sbjct: 411 AQSKDPVLNELFLVEGDSAGGSAKLGRNKKYQAILPLRGKVLNVLKARLVDVLKNEEIAS 470 Query: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536 + T LGTGIG + FD+ KL+YHKIIIMTDAD DG+HI+ LLLT F+R M LI NG +YI Sbjct: 471 IFTCLGTGIGAE-FDLKKLKYHKIIIMTDADTDGSHIQVLLLTLFYRFMRPLIENGNIYI 529 Query: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRN 589 PPLY +T + ++ + +E + + G ++ + L Sbjct: 530 ALPPLYKLTNKNNKKFFYAWDDVELDQLKKEQKNYEIQRYKGLGEMNADQLFE 582 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%) Query: 692 IFSNRIEENYLTILSLICNGDKIKITGPCSL-LDTIFSIGRKGISMQRYKGLGEMNASQL 750 I + I + L +K + LD + +K +QRYKGLGEMNA QL Sbjct: 522 IENGNIYIALPPLYKLTNKNNKKFFYAWDDVELDQLKKE-QKNYEIQRYKGLGEMNADQL 580 Query: 751 WETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQEN 795 +ETT++P+ R LL++ I D QA+ + LMG++V R+++I N Sbjct: 581 FETTMDPNNRLLLKININDILQAERQINTLMGNDVSIRKQWIDNN 625 >gi|158424137|ref|YP_001525429.1| DNA topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571] gi|158331026|dbj|BAF88511.1| gram negative topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571] Length = 672 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 233/625 (37%), Positives = 337/625 (53%), Gaps = 19/625 (3%) Query: 8 SSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVT 67 S Y A I++L+GL+ V++RP MYIG TD LHH+ EV+DN++DE++ G+A I V Sbjct: 27 SDYTAAHIEVLEGLEPVRRRPGMYIGGTDA-KALHHLFAEVIDNSMDEAVAGHATFIEVQ 85 Query: 68 LNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126 L+ DGS TV DNGRGIP + H + G SA EVIMT LH+GGKF+ K Y+ SGGLHGVGVS Sbjct: 86 LSNDGSLTVIDNGRGIPVEEHPKFPGKSALEVIMTTLHSGGKFDSKVYETSGGLHGVGVS 145 Query: 127 VVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-SVQ 185 VVNALS ++ + R +Y +F G L G N GT++ F P DIF Sbjct: 146 VVNALSDAFEVEVARNQTLYRQTFSRGTPQGKLKEVGRITNRRGTKIRFHPDPDIFGPSA 205 Query: 186 DFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLDRH 239 F + R ++L V+I + P ++T + GG+ +++ Sbjct: 206 KFEPGRVFRMARAKAYLFGGVEIRWSCDPELLAGTTGVPEKMTFRFPGGLRDYLAADIEG 265 Query: 240 KKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + + + + + S + A+ W + + N IP DGGTH +GLR+ L Sbjct: 266 QTLVHGDIFSGRVQKPGGHGSAEWAVAWIADGDGGISSYCNTIPTPDGGTHENGLRAVLL 325 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + + + E++ SK+ + G+D G ++LS+ + +P F QTKE+L ++E +VE Sbjct: 326 KGLREHGERTNQSKRA-ALITGEDVTAGCAAMLSVFVREPEFQGQTKERLATAEAARIVE 384 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 V D WL +P +A + V++ + R ++ ++ RK + LPGKLADC Sbjct: 385 QTVRDPFDHWLAANPAQATRLFDHVVERAEERLRRKQEKE-ISRKTAVRKLRLPGKLADC 443 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 S + SELF+VEGDSAGGSAKQ R R QA+LPLRGKILNV A DK+ +Q++ L Sbjct: 444 SNTEAAGSELFIVEGDSAGGSAKQARDRRTQAVLPLRGKILNVANAGRDKLAQNQQLADL 503 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ALG G + LRY K+IIMTDADVDGAHI +LL+TFF+RQMP L+ G L++ Sbjct: 504 GQALGCGT-LSHYREADLRYEKVIIMTDADVDGAHIASLLVTFFYRQMPKLVDEGHLFLA 562 Query: 538 KPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI---D 592 PPLY IT+G Y +D+ E L + G + L+ Sbjct: 563 VPPLYRITQGAKTLYARDDAHKEKLLKKEFNGRGKVEIGRFKGLGEMMPAQLKETTMDPK 622 Query: 593 DALKIDKLIKDFYPNHDKTFIEQAV 617 + I++ +E+ + Sbjct: 623 TRTLLQVSIEEAARAATDDIVERLM 647 Score = 123 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 5/80 (6%) Query: 729 IGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA--DDLFSRLMGDEVE 786 GR + + R+KGLGEM +QL ETT++P TR+LL+V I +A++A DD+ RLMG++ E Sbjct: 593 NGRGKVEIGRFKGLGEMMPAQLKETTMDPKTRTLLQVSIEEAARAATDDIVERLMGNKPE 652 Query: 787 PRREFIQENSLPSA---LDI 803 R FI E++ + LDI Sbjct: 653 ARFAFISEHAAFAGEELLDI 672 >gi|240255313|ref|NP_187638.4| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] Length = 693 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 259/632 (40%), Positives = 366/632 (57%), Gaps = 47/632 (7%) Query: 3 DNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYAD 62 ++ + Y ++ IQ+L+GLD V+KRP MYIG T G GLHH++YE+LDNAIDE+ G+A Sbjct: 10 ESSTSKDYSSEHIQVLEGLDPVRKRPGMYIGST-GSRGLHHLVYEILDNAIDEAQAGFAS 68 Query: 63 IITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHA--GGKFNQKSYKVSGGL 120 I V L+ D S ++SDNGRGIPTDLH G S+ E ++T LHA Y VSGGL Sbjct: 69 KIDVVLHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGL 128 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVV---TGSAGNDTGTEVTFLP 177 HGVG+SVVNALS L++ ++R+G ++ + G L + GT + F P Sbjct: 129 HGVGLSVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWP 188 Query: 178 SSD----IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREIT--MFYKGGIEA 231 + + F+++T+ R+REL+FLN V ISL + R++ FY GG+ Sbjct: 189 DKEGFALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTE 248 Query: 232 FVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWN-DGYHENVLCFTNNIPQKDGGTHLS 290 +VS+L+ KKPL + + ++D++++W D Y + +L + N+I DGGTH+ Sbjct: 249 YVSWLNTDKKPLHDVLG-FRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIE 307 Query: 291 GLRSALTRQITSYVEKSF--------------------------------GSKKDKRSVI 318 G++++LTR + S +K + + S+ Sbjct: 308 GVKASLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLS 367 Query: 319 GDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKII 378 G+ REG T ++S+K+P+P F QTK +L + EVR +V+ V + L+ +LE HP + I Sbjct: 368 GEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESI 427 Query: 379 VKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGS 438 + K L+A AA+RAR+L R K VL +SLPGKLADCS DP +SE+F+VEGDSAGGS Sbjct: 428 ISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGS 487 Query: 439 AKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYH 498 AKQGR R QAILPLRGKILN+ER M ++EI LI LG G+ + F+ LRYH Sbjct: 488 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYH 547 Query: 499 KIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEES 558 KIII+TDADVDGAHIRTLLLTFFFR +L G +Y+ PPL+ + RGK Y D+ + Sbjct: 548 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAA 607 Query: 559 LEDYLINQSLSEE-IELFCDSKGVISKNDLRN 589 L+ + + G + L Sbjct: 608 LKKITASFPGNASYNIQRFKGLGEMMPAQLWE 639 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 117/334 (35%), Gaps = 38/334 (11%) Query: 505 DADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK--PPLYGITRGKSLQYVKDEESLEDY 562 D + G H+R L ++P+ G P + I +Y+ + L Sbjct: 363 DISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPD 422 Query: 563 LINQSLSEEIELFCDSKGVISKNDLRNFI----------------------DDALKIDKL 600 ++ +S+ + + + +L + ++ Sbjct: 423 VLESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGD 482 Query: 601 IKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFI-----AEKSEKSWHG 655 + QA++ + + + + K N I K E Sbjct: 483 SAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKE 542 Query: 656 SINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIK 715 ++ I++ V + F F + + I + + Sbjct: 543 NLRYHKIIIL-TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHY 601 Query: 716 ITGPCSLLDTIFSI--GRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQA 773 + L I + G ++QR+KGLGEM +QLWETT+NPDTR L ++ + DA++ Sbjct: 602 CYD-DAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAET 660 Query: 774 DDLFSRLMGDEVEPRREFIQENS----LPSALDI 803 + +FS LMG V+ R+E I+ + L LDI Sbjct: 661 NMVFSSLMGARVDVRKELIKSAATRMNLE-NLDI 693 >gi|126725667|ref|ZP_01741509.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150] gi|126704871|gb|EBA03962.1| DNA topoisomerase IV subunit B [Rhodobacterales bacterium HTCC2150] Length = 653 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 235/650 (36%), Positives = 340/650 (52%), Gaps = 18/650 (2%) Query: 2 SDNIQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYA 61 + + +YDA SI++L+GL+ V+ RP MYIG TD E LHH++ EVLDN++DE++ G+A Sbjct: 7 TTPKDDPTYDASSIEVLEGLEPVRLRPGMYIGGTD-ERALHHLVAEVLDNSMDEAVAGHA 65 Query: 62 DIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGL 120 + I V L+ D + T+ DNGRGIP D H + SA EVI+ LHAGGKF+ K+Y+ SGGL Sbjct: 66 NRIEVELHADYAVTIRDNGRGIPIDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGL 125 Query: 121 HGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSD 180 HGVG SVVNALS + +++ R +YE F GI P+ G+A N GT VTF Sbjct: 126 HGVGASVVNALSDSMVVQVARNKELYEQRFSRGIPQGPVEKVGAAPNRRGTSVTFHADEQ 185 Query: 181 IFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSP--EPREITMFYKGGIEAFVSYLDR 238 IF F L +R ++L S V+I + P E T + GG+ +++ Sbjct: 186 IFGHHRFKPARLFKSIRSKAYLFSGVEIRWKSEIDDGTTPTEATFHFPGGLSDYLNETLG 245 Query: 239 HKKPLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLR 293 + P + ++ A+ W + + N +P +GGTH SG Sbjct: 246 TATTYAEKPFAGTVDFQEKFGVPGKVEWAINWTPSRDGFIQSYCNTVPTPEGGTHESGFW 305 Query: 294 SALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVR 353 +A+ + I +Y E + +D G ++++S + +P F QTK++L + E + Sbjct: 306 AAVLKGIKAYGELINNK--KATQITREDLTTGGSALVSCFISEPEFVGQTKDRLATVEAQ 363 Query: 354 SVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGK 413 +VE+ V D WL A I+ ++ S R + ++ T RK LPGK Sbjct: 364 RLVENSVRDHFDNWLAADTKSAGAILDFLVLRSEERLRRKMEKE-TARKSATKKLRLPGK 422 Query: 414 LADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQE 473 L DCS + + +ELF+VEGDSAGGSAK R R+ QA+LPLRGKILNV A KM + E Sbjct: 423 LTDCSNSNREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKMGQNAE 482 Query: 474 IGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGF 533 I L ALG G+G F+++ LRY KIIIMTDADVDGAHI LL+TFF+ QM +I NG Sbjct: 483 INDLCQALGVGLG-TKFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDNGH 541 Query: 534 LYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKNDLRNFI 591 LY+ PPL+ +T+G Y DE ++ + G + DL++ Sbjct: 542 LYLACPPLFRLTQGAKRVYCLDEIEKNNHFEKGLGGKGKIDVSRFKGLGEMDAKDLKDTT 601 Query: 592 DD---ALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 + I I + P +E+ + + N +L Sbjct: 602 MNPLTRKLIRVTIDEDEPGETGDLVERLMGKKPEKRFEYIQENAKFVEEL 651 Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 5/156 (3%) Query: 653 WHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGD 712 ++ D ++ V + F + I + + + L Sbjct: 498 FNVDDLRYDKIIIMTDADVDGAHIAALLMTFFYTQMRPMIDNGHLYLACPPLFRLTQGAK 557 Query: 713 KIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDA 770 ++ + +G KG I + R+KGLGEM+A L +TT+NP TR L+RV I + Sbjct: 558 RVYCLDEIEKNNHFEKGLGGKGKIDVSRFKGLGEMDAKDLKDTTMNPLTRKLIRVTIDED 617 Query: 771 S--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R E+IQEN+ LD+ Sbjct: 618 EPGETGDLVERLMGKKPEKRFEYIQENAKFVEELDV 653 >gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius] Length = 611 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 279/563 (49%), Positives = 381/563 (67%), Gaps = 6/563 (1%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T E GLHH+++E++DN+IDE+L GYAD I V + D V+DNGRGIP D+ + Sbjct: 1 MYIGSTS-ERGLHHLVWEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQE 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 + G A EVI+T LHAGGKF YKVSGGLHGVG SVVNALS L++ + R+G I+ + Sbjct: 60 KMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSDTLEVYVHRDGRIHHQA 119 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQD-FNYDTLQHRLRELSFLNSSVQI 208 + G+ L G + TGT + F IF +NY+TLQ R+REL+FLN ++I Sbjct: 120 YHKGVPAFDLKQVGDT-DQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRI 178 Query: 209 SLIDKRSPEPREIT-MFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDNISIDLAMRWND 267 +L D+R E Y+GGI+++V ++ +K+PL PI + +RD+I +++A+++N Sbjct: 179 TLTDERDEENVREDSYHYEGGIKSYVELINENKEPLHDEPIYVHQTRDDIEVEIALQYNS 238 Query: 268 GYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFT 327 G+ N+L + NNI +GGTH G + ALTR + +Y +S K+DK + G+D REG T Sbjct: 239 GFATNLLTYANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLT 298 Query: 328 SVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASM 387 +V+SIK DP+F QTK KL +SEVR +V+ ++ +L EHP A+IIV+K + AS Sbjct: 299 AVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASR 358 Query: 388 VRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSREN 447 R AA++AR++TRRK LDI+SLPGKLADCS +DP +SE+FLVEGDSAGGS K GR Sbjct: 359 ARIAAKKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRT 418 Query: 448 QAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDAD 507 QAILPLRGKILNVE+AR DK+L++ EI ++TA GTGIG + FDI+K RYHKI+IMTDAD Sbjct: 419 QAILPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGE-FDISKARYHKIVIMTDAD 477 Query: 508 VDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQS 567 VDGAHIRTLLLTFF+R M LI G++YI +PPLY +T+GK YV ++ L+ + Sbjct: 478 VDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKLN 537 Query: 568 LSE-EIELFCDSKGVISKNDLRN 589 + G ++ + L Sbjct: 538 PTPKWSIARYKGLGEMNADQLWE 560 Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 86/182 (47%), Gaps = 22/182 (12%) Query: 639 ANRLNFIAEKSEKSW------HGSINNSDILVKRIARGVQ-EQFVLEGSSIFSFGSKY-K 690 RL+ I +E G DI R + V ++G+ I + + Sbjct: 433 KARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFY 492 Query: 691 RIFSNRIEENYLTIL-----SLICNGDKIKITGPCSLLDTIFSIGRK-----GISMQRYK 740 R IE Y+ I L K + LD + K S+ RYK Sbjct: 493 RFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRE-LDKLKE---KLNPTPKWSIARYK 548 Query: 741 GLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQENSLPSA 800 GLGEMNA QLWETT+NP+ R++L+V + DA +AD F LMGD VE RR+FI++N++ + Sbjct: 549 GLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYAN 608 Query: 801 LD 802 LD Sbjct: 609 LD 610 >gi|310820411|ref|YP_003952769.1| type II DNA topoisomerase subunit B [Stigmatella aurantiaca DW4/3-1] gi|309393483|gb|ADO70942.1| Type II DNA topoisomerase, B subunit [Stigmatella aurantiaca DW4/3-1] Length = 642 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 234/592 (39%), Positives = 352/592 (59%), Gaps = 12/592 (2%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 + +Y IQ+L+GL+ V+KRP+MYIG TD +G HH+++E+LDN++DE + G+A + Sbjct: 3 KKETYTGADIQVLEGLEPVRKRPAMYIGGTD-GTGYHHLLWEILDNSVDEVINGHASTVE 61 Query: 66 VTLNMDG-SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 VTL+ D + TV DNGRGIP D+ + A EVI+T LHAGGKF Q +Y SGGLHGVG Sbjct: 62 VTLHKDSRTITVVDNGRGIPVDIMPKLKKPAVEVILTTLHAGGKFEQGNYIHSGGLHGVG 121 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 SVVNAL+ L + IKREG + + G PL V G A TGT +TF P +IF Sbjct: 122 SSVVNALARKLLVEIKREGKRHVQHYARGKATTPLKVEGPA-RGTGTSITFEPDPEIFGE 180 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPL 243 F+ + ++ RL S+L+ + + D+ + +T + GGI +++ + + Sbjct: 181 KLKFDPELIRERLEAKSYLHKGMTVVWKDETASPATSVTYKHDGGIAEYLNKVVAERNKP 240 Query: 244 MQSP---IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQI 300 + P + + ++ A+ W + EN+ + N IP GGTH +GLR A+ + + Sbjct: 241 VVPPGGAVFYHARDSEVRLEAALVWTEATDENIRSYVNGIPTPQGGTHEAGLRGAVVKAV 300 Query: 301 TSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFV 360 +Y+E ++ +D REG T++LS + +P+F QTK +L + EV + V+ + Sbjct: 301 RNYIETHN-LSPKGVTLTAEDIREGITAILSCYVVEPQFQGQTKGRLNNPEVTAQVDGVL 359 Query: 361 NDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKG-VLDIASLPGKLADCSE 419 L WL ++ + V +++ A+ R+A+R A RK V +LPGKLADCS Sbjct: 360 RPALEKWLNDNKSIGEAAVARIILAARAREASRAASQAVSRKTAVSHRLNLPGKLADCSS 419 Query: 420 RDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLIT 479 +P SELFLVEGDSAGGSAKQGR R QAILPLRGK+LN E+A DK+ +++E+ +++ Sbjct: 420 TEPSTSELFLVEGDSAGGSAKQGRDRRTQAILPLRGKVLNAEQASTDKVATNKELQDIVS 479 Query: 480 ALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKP 539 ALG GIG D FD++KLRY +I ++ DAD DG HI TLLLTFF+R + LI +G ++I +P Sbjct: 480 ALGCGIGSD-FDLSKLRYGRIFLLMDADSDGHHIATLLLTFFYRHLRPLIESGAVHIAQP 538 Query: 540 PLYGITRGKSLQYVKDEESLEDYLINQSLSEE--IELFCDSKGVISKNDLRN 589 PLY + GK + DE + + ++ + G ++ ++L+ Sbjct: 539 PLYKVEIGKETYWALDEADRDRIVREKAKGNAKPNIMRFKGLGEMTADELKT 590 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 735 SMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDLFSRLMGDEVEPRREFIQE 794 ++ R+KGLGEM A +L TTL+P R L+V I + + D + + L+G +V R +FI E Sbjct: 573 NIMRFKGLGEMTADELKTTTLDPHKRMSLQVTIDNPLETDRVINDLLGKDVSARFKFIME 632 Query: 795 NSLPS-ALD 802 + LD Sbjct: 633 RAGEVQDLD 641 >gi|148255370|ref|YP_001239955.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1] gi|146407543|gb|ABQ36049.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1] Length = 687 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 241/655 (36%), Positives = 346/655 (52%), Gaps = 26/655 (3%) Query: 6 QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIIT 65 Y A I++L+GL+ V++RP MYIG TD E LHH+ EV+DN++DE+L G+A I Sbjct: 40 SEGEYTARDIEVLEGLEPVRRRPGMYIGGTD-EKALHHLFAEVIDNSMDEALAGHATFIE 98 Query: 66 VTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124 V L+ G TV+DNGRGIP D H + SA E+IM LHAGGKF+ K Y+ SGGLHGVG Sbjct: 99 VELDAQGFLTVTDNGRGIPVDPHPKFPKKSALEIIMCTLHAGGKFDSKVYETSGGLHGVG 158 Query: 125 VSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIF-S 183 +SVVNALS+ L++ + R +Y M F G L G N GT+V F P IF + Sbjct: 159 ISVVNALSTRLEVEVARNQKLYRMIFERGHPKGKLEEIGKVANRRGTKVRFQPDPTIFGA 218 Query: 184 VQDFNYDTLQHRLRELSFLNSSVQISLIDKR------SPEPREITMFYKGGIEAFVSYLD 237 F L R ++L V+I E T + GG++ +++ Sbjct: 219 KATFKPQRLFKMARSKAYLFGGVEIRWKCDPSLLKGIEDVQPEATFHFPGGLKDYLAAAI 278 Query: 238 RHKKPLMQSPIRIQGSRD--NISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSA 295 + + R + + A+ W + + N IP DGGTH SG+RSA Sbjct: 279 HADTLVHPDIFAGKSGRTGGHGGCEWAVAWTADADGFLSSYCNTIPTPDGGTHESGIRSA 338 Query: 296 LTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSV 355 L R + + E+ K ++ +D G +LS+ + +P F QTK++L ++E + + Sbjct: 339 LLRGLKDHAERVGQ-GKRSANITSEDIMAGAAIMLSVFVREPEFQGQTKDRLATAEAQRI 397 Query: 356 VESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLA 415 VE V D WL +P++A ++ V++ RR T RK LPGKLA Sbjct: 398 VEQAVKDPFDHWLSGNPVQANRLLDFVIER-AEERIRRRQEKETARKTATKKLRLPGKLA 456 Query: 416 DCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIG 475 DC++ + SELF+VEGDSAGGSAKQ R R+ QA+LPLRGKILNV A DK+ ++ ++ Sbjct: 457 DCTDAGTEGSELFIVEGDSAGGSAKQARDRKKQAVLPLRGKILNVASAGKDKLTANAQLA 516 Query: 476 TLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLY 535 L+ A+G G G S+ LRY +IIIMTDADVDGAHI +LL+TFF+RQMP LI G LY Sbjct: 517 DLVMAIGAGTG-TSYREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLIDEGHLY 575 Query: 536 IIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDAL 595 + PPLY +T Y +DE ++ L + + KG+ + + + Sbjct: 576 LAVPPLYRLTHNSKTFYARDEAHRDEILKREFNANAKVDIGRFKGL--GEMMPAQLKET- 632 Query: 596 KIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKLANRLNFIAEKSE 650 + K + + V+ + + + +K R FI+EK+E Sbjct: 633 ---------TMDPAKRTLLRVVLLADDRDGTADSVERLMGTKAEARFAFISEKAE 678 Score = 97.4 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 7/190 (3%) Query: 621 VFNCESDQEINVSLASKLANRLNFIAEKSEKSWHGSINNSDILVKRIARGVQEQFVLEGS 680 + N S + ++ ++LA+ + I + S+ ++ V + Sbjct: 498 ILNVASAGKDKLTANAQLADLVMAIGAGTGTSYREEDLRYQRIIIMTDADVDGAHIASLL 557 Query: 681 SIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGPCSLLDTIFSI--GRKGISMQR 738 F + + I + + L N + + + + R Sbjct: 558 ITFFYRQMPRLIDEGHLYLAVPPLYRLTHNSKTFYARDEAHRDEILKREFNANAKVDIGR 617 Query: 739 YKGLGEMNASQLWETTLNPDTRSLLRVKI--TDASQADDLFSRLMGDEVEPRREFIQENS 796 +KGLGEM +QL ETT++P R+LLRV + D D RLMG + E R FI E + Sbjct: 618 FKGLGEMMPAQLKETTMDPAKRTLLRVVLLADDRDGTADSVERLMGTKAEARFAFISEKA 677 Query: 797 LPSA---LDI 803 ++ LD+ Sbjct: 678 EFASDELLDV 687 >gi|225020879|ref|ZP_03710071.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii ATCC 33806] gi|224946361|gb|EEG27570.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii ATCC 33806] Length = 646 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 255/611 (41%), Positives = 364/611 (59%), Gaps = 38/611 (6%) Query: 30 MYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHK 89 MYIG T+ E GLHH+++EV+DN++DE++ GYAD + VT+ DG V DNGRGIP ++H Sbjct: 1 MYIGSTN-ERGLHHLVWEVVDNSVDEAMAGYADKVEVTILADGGIEVIDNGRGIPVEMHP 59 Query: 90 EEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMS 149 G +V+MT+LHAGGKF+ +SY VSGGLHGVG+SVVNALS+ ++ IKR+G + + Sbjct: 60 S-GAPTVQVVMTQLHAGGKFDSESYAVSGGLHGVGISVVNALSTRVEADIKRDGKHWYQN 118 Query: 150 FINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQIS 209 F N I L V G TGT V F P ++F F+++ + RL+E++FLN + I+ Sbjct: 119 FTNAIP-EEL-VAGGPAEGTGTTVRFWPDPEVFETTVFSFELIARRLQEMAFLNKGLTIT 176 Query: 210 LIDKRSPEPREI--------------------------------TMFYKGGIEAFVSYLD 237 L DKR+ E T +Y G++ +V +L+ Sbjct: 177 LTDKRASEEEIELETLAEEIAEGDPETAVEAAEEKVVKKKEKKKTFYYPNGLQDYVEHLN 236 Query: 238 RHKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALT 297 + K + + I ++ +N+ +++AM+WN GY ++V F N I +GGTH G R+ALT Sbjct: 237 KSKTAIHPTIISLEVKGENLEVEVAMQWNSGYAQSVHTFANTINTIEGGTHEEGFRAALT 296 Query: 298 RQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVE 357 + Y + K+ ++++ GDDCREG +V+S+++ +P+F QTK KL +SEVR V+ Sbjct: 297 SLMNKYAREHKLLKEKEQNLTGDDCREGLAAVISVRVGEPQFEGQTKTKLGNSEVRGFVQ 356 Query: 358 SFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADC 417 +N+ +S WL+ +P EAK+I+ K + ++ R AAR+AR++ RRK D+ LPGKLADC Sbjct: 357 KAINEHVSDWLDANPAEAKVIINKAVSSAHARVAARKAREMVRRKSATDLGGLPGKLADC 416 Query: 418 SERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTL 477 +DP KSEL++VEGDSAGGSAK GR QAILPLRGKILNVE+AR DK+L + E+ + Sbjct: 417 RSKDPAKSELYIVEGDSAGGSAKGGRDSMYQAILPLRGKILNVEKARLDKVLKNNEVQAI 476 Query: 478 ITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYII 537 ITALGTGI D FDI KLRY KI++M DADVDG HI TLLLT FR MP LI G +++ Sbjct: 477 ITALGTGI-HDEFDIQKLRYGKIVLMADADVDGQHIATLLLTLLFRFMPQLIEEGHVFLA 535 Query: 538 KPPLYGITR-GKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596 +PPLY + + + ++ L + D N + Sbjct: 536 QPPLYKLKWAKGDPGFAYSDNQRDELLAEGLAAGRKINKDDGIQRYKGLGEMNASELWET 595 Query: 597 IDKLIKDFYPN 607 Sbjct: 596 TLDPQVRILRR 606 Score = 138 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 6/88 (6%) Query: 721 SLLDTIFSIGRKGIS----MQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDASQADDL 776 LL + GRK I+ +QRYKGLGEMNAS+LWETTL+P R L RV + DA AD+L Sbjct: 560 ELLAEGLAAGRK-INKDDGIQRYKGLGEMNASELWETTLDPQVRILRRVDMNDAQLADEL 618 Query: 777 FSRLMGDEVEPRREFIQENSLPSA-LDI 803 FS LMGD+V RR FI + LD+ Sbjct: 619 FSILMGDDVAARRSFITRKAKDVRFLDV 646 >gi|19909659|dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia] Length = 464 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 280/466 (60%), Positives = 361/466 (77%), Gaps = 3/466 (0%) Query: 38 ESGLHHMIYEVLDNAIDESLEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKEEGISAAE 97 +GLHHM++EV+DN+IDE+L G+ + I VT++ D S +V D+GRGIPT++H EE +SAAE Sbjct: 1 GTGLHHMVFEVVDNSIDEALAGHCNDIIVTIHDDNSVSVRDDGRGIPTEMHPEEQVSAAE 60 Query: 98 VIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDN 157 VIMT LHAGGKF+ SYKVSGGLHGVGVSVVNALS + L I R G I+ ++ +G Sbjct: 61 VIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQA 120 Query: 158 PLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPE 217 PL V G + TGTE+ F PS + FS +F+YD L RLRELSFLNS V I L D+R E Sbjct: 121 PLAVIGET-DKTGTEIRFWPSEETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDER-EE 178 Query: 218 PREITMFYKGGIEAFVSYLDRHKKPLMQSPIRIQGSRDN-ISIDLAMRWNDGYHENVLCF 276 + ++GGI+AFV +L+ +K P++Q RD+ I+++ AM+WNDGY EN+ CF Sbjct: 179 DKGDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEFAMQWNDGYQENIYCF 238 Query: 277 TNNIPQKDGGTHLSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPD 336 TNNIPQ+DGGTHL+G R+ALTR + S+++K SKK K + GDD REG T+V+S+K+PD Sbjct: 239 TNNIPQRDGGTHLAGFRAALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVISVKVPD 298 Query: 337 PRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR 396 P+FSSQTK+KLVSSEV+S VE + + LS +L E+P EAK + K++DA+ RDAAR+AR Sbjct: 299 PKFSSQTKDKLVSSEVKSAVEQAMGEKLSEFLIENPAEAKTVCTKIIDAARARDAARKAR 358 Query: 397 DLTRRKGVLDIASLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGK 456 ++TRRKG LD+A LPGKLADC E+DP SEL++VEGDSAGGSAKQGR+R+NQAILPL+GK Sbjct: 359 EMTRRKGALDLAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGK 418 Query: 457 ILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIII 502 ILNVE+ARFDKMLSSQE+ TLITALG GIG+D ++ +KLRYH III Sbjct: 419 ILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHNIII 464 >gi|84501601|ref|ZP_00999773.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597] gi|84390222|gb|EAQ02781.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597] Length = 652 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 244/655 (37%), Positives = 349/655 (53%), Gaps = 22/655 (3%) Query: 1 MSDN----IQNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDES 56 M+D+ +YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE+ Sbjct: 1 MADDLLTDTAPDTYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEA 59 Query: 57 LEGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYK 115 + G+A I V L+ D S TV DNGRG+P D H + G SA EVI+ LHAGGKF+ KSY+ Sbjct: 60 VAGHATRIEVELHEDYSLTVRDNGRGMPFDPHPKFPGKSALEVILCTLHAGGKFSGKSYE 119 Query: 116 VSGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTF 175 SGGLHGVG SVVNALS + +++ R+ + E F G+ PL G+A N GT TF Sbjct: 120 TSGGLHGVGASVVNALSDSMVVQVARDRKLVEQRFSRGVPQGPLQEIGAAPNRRGTTTTF 179 Query: 176 LPSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLID--KRSPEPREITMFYKGGIEAFV 233 P +IF F L +R ++L S V+I P+E T + GG+ ++ Sbjct: 180 HPDEEIFGHHKFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPQEATFHFPGGLADYL 239 Query: 234 SYLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGGTH 288 ++P + R + ++ A+ W V + N +P +GGTH Sbjct: 240 KESLSGAMTYSEAPFAGRVSFQERFGVPGRVEWAINWTPVRDGFVQSYCNTVPTPEGGTH 299 Query: 289 LSGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLV 348 ++G +A+ + I +Y E + + +D G +++S + +P F QTK++L Sbjct: 300 VAGFWAAVLKGIKAYGELVN--NRKAAQITREDLMAGGCALVSCFIREPEFVGQTKDRLA 357 Query: 349 SSEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIA 408 + E +VE+ V D WL A I+ ++ + RR T+RK Sbjct: 358 TVEAHRLVENAVRDHFDNWLAADTKSAGAILDFLVLRA-EERQRRRQEKETQRKTATKKL 416 Query: 409 SLPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKM 468 LPGKL DCS + +ELFLVEGDSAGGSAK R R+ QA+LPLRGKILNV A +K+ Sbjct: 417 RLPGKLTDCSATNRDGTELFLVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASNKI 476 Query: 469 LSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSL 528 ++QEI L A+G G+G F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM L Sbjct: 477 GTNQEINDLCQAMGVGLG-TKFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFSQMRPL 535 Query: 529 IHNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFC--DSKGVISKND 586 I G LY+ PPL+ +T+G YV+DE + +L + G + D Sbjct: 536 IDKGHLYLACPPLFRLTQGAHRVYVQDEAERDVWLEKGLGGKGKIEVSRFKGLGEMDAKD 595 Query: 587 LRN---FIDDALKIDKLIKDFYPNHDKTFIEQAVISGVFNCESDQEINVSLASKL 638 L+ + I + + P +E+ + + N A L Sbjct: 596 LKETTMDVKTRKLIRVTVDEEAPGETGDLVERLMGKKPELRFQYIQENARFAEGL 650 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 5/148 (3%) Query: 660 SDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNGDKIKITGP 719 D ++ V + F F I + + L ++ + Sbjct: 504 YDKIIIMTDADVDGAHIASLLMTFFFSQMRPLIDKGHLYLACPPLFRLTQGAHRVYVQDE 563 Query: 720 CSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITDAS--QADD 775 + +G KG I + R+KGLGEM+A L ETT++ TR L+RV + + + + D Sbjct: 564 AERDVWLEKGLGGKGKIEVSRFKGLGEMDAKDLKETTMDVKTRKLIRVTVDEEAPGETGD 623 Query: 776 LFSRLMGDEVEPRREFIQENSLPSA-LD 802 L RLMG + E R ++IQEN+ + LD Sbjct: 624 LVERLMGKKPELRFQYIQENARFAEGLD 651 >gi|146276459|ref|YP_001166618.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17025] gi|145554700|gb|ABP69313.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC 17025] Length = 663 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 236/576 (40%), Positives = 331/576 (57%), Gaps = 16/576 (2%) Query: 1 MSDNI---QNSSYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESL 57 M++++ Q +YDA SI++L+GL+ V+KRP MYIG TD E LHH++ E+LDN++DE++ Sbjct: 13 MANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGTD-ERALHHLVAEILDNSMDEAV 71 Query: 58 EGYADIITVTLNMDGSCTVSDNGRGIPTDLHKE-EGISAAEVIMTRLHAGGKFNQKSYKV 116 G+A I V L+ D S T+ DNGRGIP D H + G SA EVI+ LHAGGKF+ K+Y+ Sbjct: 72 AGHATRIEVELHADHSVTIRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQT 131 Query: 117 SGGLHGVGVSVVNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFL 176 SGGLHGVG SVVNALS +++ + R ++ SF GI P+ + G+A N GT +TF Sbjct: 132 SGGLHGVGASVVNALSDTMRVEVARNRELWVQSFARGIAQGPVKMVGAASNRRGTTITFH 191 Query: 177 PSSDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDK--RSPEPREITMFYKGGIEAFVS 234 P +IF F L R ++L S V+I P+E + GG+ +++ Sbjct: 192 PDPEIFGHLQFKPARLMKMARSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYLA 251 Query: 235 YLDRHKKPLMQSPIRIQ---GSRDNI--SIDLAMRWNDGYHENVLCFTNNIPQKDGGTHL 289 + P + + + S++ A+ W + + N +P +GGTH Sbjct: 252 EQLSGASTYAEKPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCNTVPTPEGGTHE 311 Query: 290 SGLRSALTRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349 SG SA+ + I +Y E + + +D G ++++S+ + +P+F QTK++L + Sbjct: 312 SGFWSAILKGIRAYGE--LVKNRKADQITREDMLAGGSALISVFIREPQFVGQTKDRLST 369 Query: 350 SEVRSVVESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIAS 409 E +VE+ V D WL + A I+ ++ RR T+RK Sbjct: 370 EEAAKLVENAVRDHFDNWLAANTKSAGAILDFLVLR-AEERLRRRQEKETQRKSATKKLR 428 Query: 410 LPGKLADCSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKML 469 LPGKL DCS +ELF+VEGDSAGGSAK R R QA+LPLRGKILNV A KM Sbjct: 429 LPGKLVDCSATARDGTELFIVEGDSAGGSAKMARDRTLQALLPLRGKILNVLGAASGKMG 488 Query: 470 SSQEIGTLITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLI 529 ++ EI L ALGTG+G F+I+ LRY KIIIMTDADVDGAHI +LL+TFFF QM LI Sbjct: 489 ANAEINDLCLALGTGMG-TRFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLI 547 Query: 530 HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDYLIN 565 G LY+ PPLY +T+G YV D+ E +L Sbjct: 548 DRGHLYLACPPLYRLTQGAKRLYVADDVEKELWLAK 583 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%) Query: 652 SWHGSINNSDILVKRIARGVQEQFVLEGSSIFSFGSKYKRIFSNRIEENYLTILSLICNG 711 ++ D ++ V + F F I + + L Sbjct: 507 RFNIDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRGHLYLACPPLYRLTQGA 566 Query: 712 DKIKITGPCSLLDTIFS-IGRKG-ISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKITD 769 ++ + + +G KG I +QR+KGLGEM+A L +TT+NP TR L+RV I + Sbjct: 567 KRLYVADDVEKELWLAKGLGGKGKIDVQRFKGLGEMDAKDLKDTTMNPATRKLIRVSIDE 626 Query: 770 AS--QADDLFSRLMGDEVEPRREFIQENSLPS-ALDI 803 + DL RLMG + E R ++IQEN+ LD+ Sbjct: 627 DEPGETGDLVERLMGKKPELRFQYIQENARFVEELDV 663 >gi|328543970|ref|YP_004304079.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding region [polymorphum gilvum SL003B-26A1] gi|326413714|gb|ADZ70777.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase II:DNA gyrase, subunit B, C-terminal:ATP-binding regi