>gnl|CDD|162180 TIGR01059, gyrB, DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB. Length = 654

Score = 886 bits (2291), Expect = 0.0 Identities = 340/569 (59%), Positives = 436/569 (76%), Gaps = 10/569 (1%) Query: 10 YDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTLN 69 YDA SI++L+GL+AV+KRP MYIG T GE+GLHH++YEV+DN+IDE++ GY D I VT+N Sbjct: 1 YDASSIKVLEGLEAVRKRPGMYIGST-GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN 59 Query: 70 MDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVN 129 DGS TV DNGRGIP D+H EEGISA EV++T LHAGGKF++ SYKVSGGLHGVGVSVVN Sbjct: 60 DDGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVSVVN 119 Query: 130 ALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNY 189 ALS WL++ + R+G IY F GI PL V G TGT V F P +IF +F++ Sbjct: 120 ALSEWLEVTVFRDGKIYRQEFERGIPLGPLEVVGET-KKTGTTVRFWPDPEIFETTEFDF 178 Query: 190 DTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSPIR 249 D L RLREL+FLNS V+ISL D+R + + +T Y+GGI++FV YL+R+K+PL + I Sbjct: 179 DILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEGGIKSFVKYLNRNKEPLHEEIIY 238 Query: 250 IQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKSFG 309 I+G ++ I +++A++WNDGY EN+L F NNI ++GGTHL G RSALTR I SY + + Sbjct: 239 IKGEKEGIEVEVALQWNDGYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKL 298 Query: 310 SKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAWLE 369 K+ K ++ G+D REG T+V+S+K+PDP+F QTK KL +SEVRS+VES V + L+ + E Sbjct: 299 LKESKPNLTGEDIREGLTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLVYEKLTEFFE 358 Query: 370 EHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCSERDPKKSELFL 429 E+P EAK IV+K + A+ R+AAR+AR+LTRRK LD LPGKLADCS +DP KSEL++ Sbjct: 359 ENPQEAKAIVEKAILAAQAREAARKARELTRRKSALDSGGLPGKLADCSSKDPSKSELYI 418 Query: 430 VEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDS 489 VEGDSAGGSAKQGR R+ QAILPLRGKILNVE+AR DK+LS+QEIG +ITALG GIG+D Sbjct: 419 VEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLDKILSNQEIGAIITALGCGIGKD- 477 Query: 490 FDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIKPPLYGITRGKS 549 FD+ KLRYHKIIIMTDADVDG+HIRTLLLTFF+R M LI NG++YI +PPLY + +GK Sbjct: 478 FDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENGYVYIAQPPLYKVKKGKK 537 Query: 550 LQYVKDE-------ESLEDYLINQSLSEE 571 +Y+KD+ E+LED S++ Sbjct: 538 ERYIKDDKEKELVGEALEDLRALYIYSDK 566

RPSBLAST alignment for GI: 254780814 and conserved domain: TIGR01059