RPSBLAST alignment for GI: 254780814 and conserved domain: PLN03128

>gnl|CDD|178674 PLN03128, PLN03128, DNA topoisomerase 2; Provisional. Length = 1135
 Score =  161 bits (409), Expect = 6e-40
 Identities = 156/590 (26%), Positives = 257/590 (43%), Gaps = 88/590 (14%)

Query: 27  RPSMYIGDT-----------DGE---------SGLHHMIYEVLDNAIDESL-EGYADIIT 65
           RP  YIG T            GE          GL+ +  E+L NA D    +   D + 
Sbjct: 19  RPDTYIGSTEKHTQTLWVYEGGEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLK 78

Query: 66  VTLNMD-GSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVG 124
           V ++++  + +V +NG+GIP ++HKEEG+   E+I   L     F+    K +GG +G G
Sbjct: 79  VDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYG 138

Query: 125 VSVVNALSSWLKLRIK--REGNIYEMSFINGI--LDNPLVVTGSAGNDTGTEVTFLPSSD 180
             + N  S+   +       G  Y+  F N +     P + +  A ++  T++TF P   
Sbjct: 139 AKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKA-SENWTKITFKPDLA 197

Query: 181 IFSVQDFNYDT---LQHRLRELS-FLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYL 236
            F++   + D    +  R+ +++  L   +++ L  K+ P            +++F  Y+
Sbjct: 198 KFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKKLP------------VKSFQDYV 245

Query: 237 D--RHKKPLMQSPIRI---QGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSG 291
                         RI      R  + + L+    DG  + V  F N+I    GGTH+  
Sbjct: 246 GLYLGPNSREDPLPRIYEKVNDRWEVCVSLS----DGSFQQV-SFVNSIATIKGGTHV-- 298

Query: 292 LRSALTRQITSYVEKSFGSKKDKR--SVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVS 349
               +  QI  ++++    KK+K    V     +      ++  + +P F SQTKE L +
Sbjct: 299 --DYVADQIVKHIQEKV-KKKNKNATHVKPFQIKNHLWVFVNCLIENPTFDSQTKETLTT 355

Query: 350 SEVRSVVESFVNDG-LSAWLEEHPLEAKIIVKKVLDASMVRDAARRAR-DLTRRKGVLDI 407
                   SF +   LS    +   +   +V+ +L  +  +      + D  +R+ +  I
Sbjct: 356 RP-----SSFGSKCELSEEFLKKVEKCG-VVENILSWAQFKQQKELKKKDGAKRQRLTGI 409

Query: 408 ASLPGKLADCSERDPKKSE---LFLVEGDSAGGSAKQGRS---RENQAILPLRGKILNVE 461
                KL D ++   KKS+   L L EGDSA   A  G S   R++  + PLRGK+LNV 
Sbjct: 410 P----KLDDANDAGGKKSKDCTLILTEGDSAKALAMSGLSVVGRDHYGVFPLRGKLLNVR 465

Query: 462 RARFDKMLSSQEIGTLITALGTGIGQ--DSFDINKLRYHKIIIMTDADVDGAHIRTLLLT 519
            A   +++ + EI  +   LG   G+  D  +   LRY  ++IMTD D DG+HI+ L++ 
Sbjct: 466 EASHKQIMKNAEITNIKQILGLQFGKTYDEENTKSLRYGHLMIMTDQDHDGSHIKGLIIN 525

Query: 520 FFFRQMPSLIH-NGFLYIIKPPLYGITRGKSLQ-------YVKDEESLED 561
           FF    PSL+   GFL     P+   T+G           Y   +ESLE 
Sbjct: 526 FFHSFWPSLLKIPGFLVEFITPIVKATKGGKSLSFYTMPEYEAWKESLEG 575