RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1bjt

>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793

 Score =  236 bits (603), Expect = 1e-62
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 390 DAARRARDLTRRKGVLDIASLPGKLADCSE---RDPKKSELFLVEGDSAGGSAKQGRS-- 444
           + A +  D TR+  + +      KL D ++   ++  K  L L EGDSA   A  G +  
Sbjct: 1   ENALKKSDGTRKSRITNYP----KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVV 56

Query: 445 -RENQAILPLRGKILNVERARFDKMLSSQEIGTLITALGTGIGQDSFDINKLRYHKIIIM 503
            R+     PLRGK+LNV  A  D++L + EI  +   +G    +   D   LRY  ++IM
Sbjct: 57  GRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIM 116

Query: 504 TDADVDGAHIRTLLLTFFFRQMPSLI-HNGFLYIIKPPLYGITRGKSLQYVKDEESLEDY 562
           TD D DG+HI+ L++ F       L+   GFL     P+  ++  K  +      ++ DY
Sbjct: 117 TDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDY 176

Query: 563 LINQSLSEEIELFCDSKGVISKND 586
              +   EE       K    K  
Sbjct: 177 EKWR---EEESHKFTWKQKYYKGL 197