RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1kij

>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390

 Score =  440 bits (1132), Expect = e-124
 Identities = 171/391 (43%), Positives = 242/391 (61%), Gaps = 4/391 (1%)

Query: 9   SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
           SYDA +I++LKGL+ V+ RP+MYIG T    G HH+  E+LDNA+DE+L GYA  I V L
Sbjct: 2   SYDASAIRVLKGLEGVRHRPAMYIGGTG-VEGYHHLFKEILDNAVDEALAGYATEILVRL 60

Query: 69  NMDGSCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVV 128
           N DGS TV DNGRGIP DL  EEG  A EVI   LH+GGKF Q +YKVSGGLHGVG SVV
Sbjct: 61  NEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVV 120

Query: 129 NALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGND-TGTEVTFLPSSDIFSVQDF 187
           NALS W  + + REG  + ++F  G +  PL V G A    TGT VTF P  +IF    F
Sbjct: 121 NALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNLRF 180

Query: 188 NYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDRHKKPLMQSP 247
           +   ++ RLRE+++L + +++   D++  +        KGG+ +F   L   +  L + P
Sbjct: 181 DPSKIRARLREVAYLVAGLKLVFQDRQHGKE--EVFLDKGGVASFAKALAEGEDLLYEKP 238

Query: 248 IRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTRQITSYVEKS 307
             I+G+   + +++      GY+  +L + N IP +DGGTHL+  +SA +R +  Y +K+
Sbjct: 239 FLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKA 298

Query: 308 FGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDGLSAW 367
             +K+      GDD  EG  +V+S+K+P+P+F  QTK KL++ E  + V   V + L   
Sbjct: 299 GLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEI 358

Query: 368 LEEHPLEAKIIVKKVLDASMVRDAARRARDL 398
           LEE+P  AK + +K L A+  R+AAR+AR+L
Sbjct: 359 LEENPRIAKAVYEKALRAAQAREAARKAREL 389