RPSBLAST alignment of GI: 254780814 and protein with PDBid: 1mu5
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471
Score = 67.3 bits (164), Expect = 1e-11
Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 20/193 (10%)
Query: 32 IGDTDGESGLHHMIYEVLDNAIDESLE-GYADIITVTLNMDG------SCTVSDNGRGIP 84
G + L+ + E+++N++D + G I +T+++ V DNG GIP
Sbjct: 24 AGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP 83
Query: 85 TDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSVVNALSSWLKLRIK---- 140
R+ K+ + + GL + + + + I+
Sbjct: 84 PQEVPN--------AFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135
Query: 141 REGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQDFNYDT-LQHRLREL 199
IY I N ++ + + + + ++
Sbjct: 136 NSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRT 195
Query: 200 SFLNSSVQISLID 212
+ + D
Sbjct: 196 YIITPYAEFIFKD 208