RPSBLAST alignment of GI: 254780814 and protein with PDBid: 2q2e

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621
 Score =  229 bits (585), Expect = 2e-60
 Identities = 67/548 (12%), Positives = 149/548 (27%), Gaps = 60/548 (10%)

Query: 12  ADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNM 70
           A   + +   +  +K   +   D+   S L   + E +DNA+D     G    I V +  
Sbjct: 10  AKKQKSISVAEFFEKNRQILGFDSAPRS-LITTVKEAVDNALDACEEAGILPDILVQVER 68

Query: 71  DG----SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
            G    +  + DNG GI  +            +  +L  G +F+  + K S G  G+G+S
Sbjct: 69  TGPDYVTVIIEDNGPGIVREQI--------PKVFAKLLYGSRFH--ALKQSRGQQGIGIS 118

Query: 127 VVNALSSW-------LKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPS 178
                +         +  +       +    +     N P ++     +      T +  
Sbjct: 119 AAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIEL 178

Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
               +       ++   L+  + +N   +I+LID    E            E     +  
Sbjct: 179 EMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGNEEV---------FERATDKMPE 229

Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
             + ++  P  I+         L    +    + +  F      K G      +  A   
Sbjct: 230 PAEEILPHPEGIELG------TLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKA--- 280

Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
                       + D  ++   + R+   +   +K+  P   +     +    +   +E 
Sbjct: 281 -------AGLDPEIDPHALGRHEARKLIEAFEKVKIMAP--PTDCLSPIGEDLIYRGLEK 331

Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
                  A     P         V           +   ++  +    +  L  +    +
Sbjct: 332 ETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGCVT 391

Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
               +  +      +  GG    G       +  +     +  +     +     I   I
Sbjct: 392 THAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDA---IADIPVIKEEI 448

Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
                 + +         Y           +   I T +L     ++  ++       I 
Sbjct: 449 DLAIKEVARK-----LKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPD-IN 502

Query: 539 PPLYGITR 546
           P +  I  
Sbjct: 503 PVVAKIMG 510