RPSBLAST alignment of GI: 254780814 and protein with PDBid: 2q2e
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621
Score = 229 bits (585), Expect = 2e-60
Identities = 67/548 (12%), Positives = 149/548 (27%), Gaps = 60/548 (10%)
Query: 12 ADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDE-SLEGYADIITVTLNM 70
A + + + +K + D+ S L + E +DNA+D G I V +
Sbjct: 10 AKKQKSISVAEFFEKNRQILGFDSAPRS-LITTVKEAVDNALDACEEAGILPDILVQVER 68
Query: 71 DG----SCTVSDNGRGIPTDLHKEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVS 126
G + + DNG GI + + +L G +F+ + K S G G+G+S
Sbjct: 69 TGPDYVTVIIEDNGPGIVREQI--------PKVFAKLLYGSRFH--ALKQSRGQQGIGIS 118
Query: 127 VVNALSSW-------LKLRIKREGNIYEMSFINGILDN-PLVVTGSAGNDTGTEVTFLPS 178
+ + + + + N P ++ + T +
Sbjct: 119 AAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIEL 178
Query: 179 SDIFSVQDFNYDTLQHRLRELSFLNSSVQISLIDKRSPEPREITMFYKGGIEAFVSYLDR 238
+ ++ L+ + +N +I+LID E E +
Sbjct: 179 EMRAAYVKGRRQSIYEYLKATAIVNPHARITLIDPDGNEEV---------FERATDKMPE 229
Query: 239 HKKPLMQSPIRIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSALTR 298
+ ++ P I+ L + + + F K G + A
Sbjct: 230 PAEEILPHPEGIELG------TLMKMLHYTERQKLAPFLRYSFCKIGLLTAEEICKA--- 280
Query: 299 QITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVVES 358
+ D ++ + R+ + +K+ P + + + +E
Sbjct: 281 -------AGLDPEIDPHALGRHEARKLIEAFEKVKIMAP--PTDCLSPIGEDLIYRGLEK 331
Query: 359 FVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLADCS 418
A P V + ++ + + L + +
Sbjct: 332 ETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGGCVT 391
Query: 419 ERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGTLI 478
+ + + GG G + + + + + I I
Sbjct: 392 THAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSESKDA---IADIPVIKEEI 448
Query: 479 TALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYIIK 538
+ + Y + I T +L ++ ++ I
Sbjct: 449 DLAIKEVARK-----LKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDVPD-IN 502
Query: 539 PPLYGITR 546
P + I
Sbjct: 503 PVVAKIMG 510