HHsearch alignment for GI: 254780815 and conserved domain: TIGR00984

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit; InterPro: IPR005682 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins.The inner membrane translocase is formed of a complex with a number of proteins, including the Tim17, Tim23 and Tim44 subunits. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex.
Probab=99.88  E-value=2.2e-22  Score=162.18  Aligned_cols=148  Identities=17%  Similarity=0.349  Sum_probs=137.4

Q ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCE-EEEE
Q ss_conf             54202457777661267679899999999999-999999842767899973189999999987776443498202-3662
Q gi|254780815|r   80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK-SSLV  157 (232)
Q Consensus        80 ~~~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~af-~~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~-~~~v  157 (232)
T Consensus       229 s~tE~S~Vl~~~~~iDp~F~~~~Fl~~l~~~IvP~ilEAyv~Gd~~vLk~W~~Ea~y~~l~~~~k~y~~~~~~~~dsrIL  308 (385)
T TIGR00984       229 SETEVSEVLTEIKKIDPTFDKEHFLRYLREYIVPEILEAYVKGDLEVLKKWCSEAPYSVLATTVKEYKKLGVVAKDSRIL  308 (385)
T ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCEEE
T ss_conf             55347899999852389988357898852215863021001215688620204576035668999998759355264586


Q ss_pred             EHHHHHHHHHCCCCCE--EEEEEEEEEEEEEEEECCC-CCEECCCCCCCEEEEEEEEEEECCCCCC--C--CEEEEE
Q ss_conf             0001245421134645--6999999888777667689-9680576578489999999996189899--8--668957
Q gi|254780815|r  158 GIDDMKIINASIEENT--VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSN--P--NWVLIS  227 (232)
Q Consensus       158 ~i~~~~i~~~~~~~~~--~~itV~F~~~~i~~~~d~~-g~vveG~~~~~~~~~e~WtF~R~~~~~~--p--~W~L~~  227 (232)
T Consensus       309 DI~~Vd~~~~kll~~~DIPVLiv~F~~q~v~~~k~~~~Gev~~Gd~d~~~~~~Y~~vltRd~eeld~~e~~aWklld  385 (385)
T TIGR00984       309 DIRGVDIASGKLLEQGDIPVLIVTFRAQEVNVIKNAKSGEVVAGDPDNIQRISYAWVLTRDEEELDDDETEAWKLLD  385 (385)
T ss_pred             ECCCHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCEECCCCCCCCEEEEEEEEECCHHHCCCCHHHCCCCCC
T ss_conf             11526799876517898227999878999999972787510148976001143466883564332787330340369