HHsearch alignment for GI: 254780815 and conserved domain: TIGR00984
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit; InterPro: IPR005682 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins.The inner membrane translocase is formed of a complex with a number of proteins, including the Tim17, Tim23 and Tim44 subunits. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex.
Probab=99.88 E-value=2.2e-22 Score=162.18 Aligned_cols=148 Identities=17% Similarity=0.349 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCE-EEEE
Q ss_conf 54202457777661267679899999999999-999999842767899973189999999987776443498202-3662
Q gi|254780815|r 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFNDSLSTRKSNEKNVK-SSLV 157 (232)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~Fd~~~Fl~gAk~af-~~I~~A~~~gD~~~L~~lls~~~~~~f~~~i~~r~~~~~~~~-~~~v 157 (232)
T Consensus 229 s~tE~S~Vl~~~~~iDp~F~~~~Fl~~l~~~IvP~ilEAyv~Gd~~vLk~W~~Ea~y~~l~~~~k~y~~~~~~~~dsrIL 308 (385)
T TIGR00984 229 SETEVSEVLTEIKKIDPTFDKEHFLRYLREYIVPEILEAYVKGDLEVLKKWCSEAPYSVLATTVKEYKKLGVVAKDSRIL 308 (385)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCEEE
T ss_conf 55347899999852389988357898852215863021001215688620204576035668999998759355264586
Q ss_pred EHHHHHHHHHCCCCCE--EEEEEEEEEEEEEEEECCC-CCEECCCCCCCEEEEEEEEEEECCCCCC--C--CEEEEE
Q ss_conf 0001245421134645--6999999888777667689-9680576578489999999996189899--8--668957
Q gi|254780815|r 158 GIDDMKIINASIEENT--VYITIRIVGQFISASYDKD-NLLISSDPEIFGKVIDIWTFVRNIPPSN--P--NWVLIS 227 (232)
Q Consensus 158 ~i~~~~i~~~~~~~~~--~~itV~F~~~~i~~~~d~~-g~vveG~~~~~~~~~e~WtF~R~~~~~~--p--~W~L~~ 227 (232)
T Consensus 309 DI~~Vd~~~~kll~~~DIPVLiv~F~~q~v~~~k~~~~Gev~~Gd~d~~~~~~Y~~vltRd~eeld~~e~~aWklld 385 (385)
T TIGR00984 309 DIRGVDIASGKLLEQGDIPVLIVTFRAQEVNVIKNAKSGEVVAGDPDNIQRISYAWVLTRDEEELDDDETEAWKLLD 385 (385)
T ss_pred ECCCHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCEECCCCCCCCEEEEEEEEECCHHHCCCCHHHCCCCCC
T ss_conf 11526799876517898227999878999999972787510148976001143466883564332787330340369