RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780815|ref|YP_003065228.1| hypothetical protein
CLIBASIA_03530 [Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics,
TIM, structural genomics, NPPFSA, riken structural
genomics/proteomics initiative; HET: 1PE; 1.90A {Homo
sapiens} SCOP: d.17.4.13
Length = 194
Score = 103 bits (258), Expect = 4e-23
Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 3/163 (1%)
Query: 69 DNLDSINELFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNS-YEAIVDSFFEGKVHAIE 127
D + + T +++V+ +I+ V FD FL + N ++++ G++ ++
Sbjct: 23 DKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 82
Query: 128 KLVDSRVYQDFNDSLSTRKSNEKNVKSSLVGIDDMKIINASIEENTVYITIRIVGQFISA 187
Y + K+ S ++ ID++ + + E + I Q +
Sbjct: 83 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMV 142
Query: 188 SYDKDNLLISSDPEIFGKVIDIWTFVRNIPPSNPN--WVLIST 228
+ ++ DP+ +++ +W R+ NP W L+
Sbjct: 143 VRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLDI 185
>2fxt_A Import inner membrane translocase subunit TIM44; mitochondrial
translocase, protein transport; 3.20A {Saccharomyces
cerevisiae} SCOP: d.17.4.13
Length = 192
Score = 95.4 bits (237), Expect = 1e-20
Identities = 20/153 (13%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 82 TRLNKVMRDIVSVYTDFDPKDFLNEARNSY-EAIVDSFFEGKVHAIEKLVDSRVYQDFND 140
T ++V + F + F R I++++ +G V ++K + +
Sbjct: 35 TESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAA 94
Query: 141 SLSTRKSNEKNVKSSLVGIDDMKIINASIE--ENTVYITIRIVGQFISA-SYDKDNLLIS 197
K + ++ I ++I++A + ++ + + Q I+ K + +
Sbjct: 95 QQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAA 154
Query: 198 SDPEIFGKVIDIWTFVRNIPPSNPN----WVLI 226
D F R+ + + W ++
Sbjct: 155 GDEANILMSSYAMVFTRDPEQIDDDETEGWKIL 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 36.8 bits (85), Expect = 0.004
Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 59/185 (31%)
Query: 78 FP-IG-TRLNKVMRDIVSVYTDFDPKDFLNEARNSYEA-------IV-----------DS 117
P IG +L + + + F P + R+ + +V +S
Sbjct: 238 CPLIGVIQLAHYV--VTAKLLGFTPGEL----RSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 118 FFEGKVHAIEKL--VDSRVYQDF-NDSL--STRKSNEKN---VKSSLVGIDDM------K 163
FF AI L + R Y+ + N SL S + + +N V S ++ I ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 164 II---NASI-EENTVYITIRIVGQFISASYDKDNLLISSDPE-IFGKVIDIWTFVRNI-P 217
+ N+ + V I++ + G NL++S P+ ++G +++ +R
Sbjct: 352 YVNKTNSHLPAGKQVEISL-VNGA--------KNLVVSGPPQSLYG--LNLT--LRKAKA 398
Query: 218 PSNPN 222
PS +
Sbjct: 399 PSGLD 403
Score = 31.5 bits (71), Expect = 0.16
Identities = 46/286 (16%), Positives = 86/286 (30%), Gaps = 109/286 (38%)
Query: 12 LILLFAFITFFVFLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITLGKGKKKDNL 71
LI + + V + +LG G + G S+ G++T + D+
Sbjct: 240 LIGVIQLAHYVVTAK---LLGFTPGE---LRSYLKGATGHSQ----GLVTAVAIAETDSW 289
Query: 72 DSINE--------LFPIGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGK- 122
+S LF IG R Y + P L + + DS +
Sbjct: 290 ESFFVSVRKAITVLFFIGVR----------CYEAY-PNTSLPPS-----ILEDSLENNEG 333
Query: 123 -------VH-----AIEKLVDSRVYQDFNDSL-STRK-----SN-EKNV-----KSSLVG 158
+ ++ V+ N L + ++ N KN+ SL G
Sbjct: 334 VPSPMLSISNLTQEQVQDYVN-----KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 159 ID-DMKIINASIEENTVYIT-----IRIVGQF--ISA----SY--------DKDNLLISS 198
++ ++ A + I ++ +F +++ +KD L+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--LVKN 446
Query: 199 DPEIFGK-----VIDIWTF----VR----NIPPS-------NP-NW 223
+ K V D TF +R +I P W
Sbjct: 447 NVSFNAKDIQIPVYD--TFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 26.8 bits (59), Expect = 4.2
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 32/106 (30%)
Query: 24 FLQLRGVLGKKTGNEKPFSGFFSGKYVFSKRDERGIITL--GKGKKKDNLDSINELFPIG 81
++ R + + + S F ++ + G+G + D EL
Sbjct: 126 YITARIMAKRPFDKKSN-SALFRA----VGEGNAQLVAIFGGQG---NTDDYFEEL---- 173
Query: 82 TRLNKVMRDIVSVYTDFDPKDF-------LNE-ARNSYEAIVDSFF 119
RD+ Y D L+E R + +A + F
Sbjct: 174 -------RDLYQTYHVL-VGDLIKFSAETLSELIRTTLDA--EKVF 209
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 30.0 bits (67), Expect = 0.52
Identities = 14/89 (15%), Positives = 28/89 (31%)
Query: 83 RLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFNDSL 142
+L V +IV D +++ + + + K IE + RV ++L
Sbjct: 838 KLVDVAHEIVVREADCGTTKYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEAL 897
Query: 143 STRKSNEKNVKSSLVGIDDMKIINASIEE 171
R + + V + E
Sbjct: 898 GRRLEEGRYLSLEDVHFLIKAAEAGEVRE 926
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein
complex, apoptosis, protein folding, nucleotide exchange
factor; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B*
3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B*
Length = 114
Score = 27.8 bits (61), Expect = 2.1
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 80 IGTRLNKVMRDIVSVYTDFDPKDFLNEARNSYEAIVDSFFEGKVHAIEKLVDSRVYQDFN 139
I +L ++ +++ + F PKD EA + V + E + +E++ + ++F
Sbjct: 23 IADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFK 82
Query: 140 DSLSTRKSNEKNVKSSLVGIDDMK 163
DS RK K V++ L D ++
Sbjct: 83 DSRLKRKGLVKKVQAFLAECDTVE 106
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.140 0.401
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,020,013
Number of extensions: 93209
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 10
Length of query: 232
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 143
Effective length of database: 3,535,514
Effective search space: 505578502
Effective search space used: 505578502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)