Query gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs 116 out of 935
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 17:39:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05751 preprotein translocas 100.0 0 0 343.3 13.9 145 5-151 1-145 (147)
2 PRK13031 preprotein translocas 100.0 0 0 343.3 13.6 147 1-149 1-148 (149)
3 pfam02556 SecB Preprotein tran 100.0 0 0 328.9 13.4 143 1-145 1-147 (147)
4 COG1952 SecB Preprotein transl 100.0 0 0 312.4 13.0 144 5-150 9-152 (157)
5 cd00557 Translocase_SecB Prepr 100.0 0 0 307.2 11.3 129 9-139 1-131 (131)
6 TIGR00809 secB protein-export 99.9 1.5E-26 3.8E-31 176.9 8.8 140 4-145 2-144 (146)
7 KOG1424 consensus 55.2 2.9 7.4E-05 22.1 -0.3 32 95-126 359-390 (562)
8 TIGR01691 enolase-ppase 2,3-di 52.4 9.3 0.00024 19.2 1.9 26 101-126 17-43 (240)
9 COG4047 Uncharacterized protei 34.9 29 0.00075 16.2 2.2 40 94-140 181-220 (243)
10 KOG2853 consensus 27.9 34 0.00085 15.9 1.5 34 107-140 468-501 (509)
11 KOG2423 consensus 25.1 15 0.00037 18.0 -0.7 29 93-122 350-378 (572)
12 KOG2630 consensus 25.1 40 0.001 15.4 1.5 21 100-120 23-43 (254)
13 KOG3824 consensus 22.3 64 0.0016 14.2 2.1 28 110-137 383-410 (472)
14 COG3877 Uncharacterized protei 22.3 64 0.0016 14.2 3.8 64 76-139 26-105 (122)
No 1
>PRK05751 preprotein translocase subunit SecB; Validated
Probab=100.00 E-value=0 Score=343.33 Aligned_cols=145 Identities=37% Similarity=0.716 Sum_probs=139.8
Q ss_pred CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf 13010123013011103788716776431015841588865121214654057999984046766543012577546899
Q gi|254780817|r 5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGIL 84 (152)
Q Consensus 5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif 84 (152)
++|+|+|++|||||||||+||||++|. .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|++|||||
T Consensus 1 ~~p~f~I~~qYiKDlSFE~Pnap~~f~--~~~~p~~~i~vdi~~~~l~~~~~EV~l~l~~~a~~~~~~~f~~El~yagif 78 (147)
T PRK05751 1 QQPQFQIQRIYTKDLSFENPNAPAIFQ--EEWQPEVNLNLDTNATKLAEDVYEVVLTVTVTAKNGEKTAFLCEVQQAGIF 78 (147)
T ss_pred CCCEEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEEE
T ss_conf 997077510354303503899806753--266995469985064206898699999999997578836999998889999
Q ss_pred EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r 85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM 151 (152)
Q Consensus 85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~ 151 (152)
+|.|+++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++|++++++++
T Consensus 79 ~i~~~~~~~l~~~lli~cP~~lfP~aR~ii~~l~~~gGFppl~l~pIdF~~LY~~~~~q~~~~~~~~ 145 (147)
T PRK05751 79 TIRNIPEEQLAPLLGIECPNILFPYAREIISDLVRRGGFPPLNLAPINFDALYEQRLQQQQAAAAAA 145 (147)
T ss_pred EECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9778998998656600461665568999999999707999755686389999999999999853411
No 2
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=100.00 E-value=0 Score=343.26 Aligned_cols=147 Identities=24% Similarity=0.560 Sum_probs=140.7
Q ss_pred CCCCCCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCCCCCEEEEEE
Q ss_conf 983113010123013011103788716776431015841588865121214-6540579999840467665430125775
Q gi|254780817|r 1 MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTI-SGADFDVILSFDIEAKNNDKVIFRLELA 79 (152)
Q Consensus 1 M~~~~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l-~~~~~EV~l~l~~~ak~~~~~~f~~Ei~ 79 (152)
|++..+|+|.|+++||||||||+|+||.+|. .+|.|++++++|++++++ +++.|||+|+++++++.+++++|++|+.
T Consensus 1 m~~~~qp~f~I~~~YvKDlSFE~Pnap~~f~--~~~~P~i~i~v~v~~~~l~~~~~~EV~L~i~~~a~~~~~~~FlvEl~ 78 (149)
T PRK13031 1 MDQQAQPQFQIQKVYVKDLSFSIPNSDKIWT--TNWKPELHTDLKVEATKLPEENTYETVLTLEVKVENDGMVAFEAEVK 78 (149)
T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCHHHC--CCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 9966698368868986311554899804537--57899657998515202577982999999999997198789999984
Q ss_pred EEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4689997588710344466630455341789999999997389988660553989999999999986420
Q gi|254780817|r 80 YSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG 149 (152)
Q Consensus 80 yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~ 149 (152)
|||||.|.|+++++++++|+++||++||||||++|++++++||||||+|+||||++||++++++++..+.
T Consensus 79 yaGiF~i~~~~e~~~~~~L~v~cP~iLFPyaR~iIsd~~~~gGFPpL~L~PInF~alY~q~~~~~ae~~q 148 (149)
T PRK13031 79 QAGIFTVANMQEAQIEHAKKAFCPNILYHYAREAISDLVISGGFPQLCLSAVNFDAMYQDSLKESADSKQ 148 (149)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7569997689989988888504336567879999998874379986345873899999999999888704
No 3
>pfam02556 SecB Preprotein translocase subunit SecB. This family consists of preprotein translocase subunit SecB. SecB is required for the normal export of envelope proteins out of the cell cytoplasm.
Probab=100.00 E-value=0 Score=328.91 Aligned_cols=143 Identities=38% Similarity=0.781 Sum_probs=135.0
Q ss_pred CCCCC----CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 98311----30101230130111037887167764310158415888651212146540579999840467665430125
Q gi|254780817|r 1 MEKKQ----KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRL 76 (152)
Q Consensus 1 M~~~~----~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~ 76 (152)
|.+.. +|+|+|+++||||||||+||||++|. .+|.|++++++|+++++++++.|||.|+++++++.+++++|++
T Consensus 1 M~e~~~~~~~p~~~I~~~YiKDlSFE~Pnap~~f~--~~~~p~~~~~idi~~~~~~~~~~EV~l~l~~~~k~~~~~~f~~ 78 (147)
T pfam02556 1 MSEENQAAPQPQFQIQRQYVKDLSFENPNAPAIFL--EEWQPEVNVQLNVNARKLAENVYEVVLTVTVTAKNEEKTAFLV 78 (147)
T ss_pred CCCCCCCCCCCCEEEEHEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 97334576799279403563303513899836755--5679954788611633747876999999999964788269999
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 775468999758871034446663045534178999999999738998866055398999999999998
Q gi|254780817|r 77 ELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIK 145 (152)
Q Consensus 77 Ei~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~ 145 (152)
|++|||+|+|.|+++++++++|+|+||++||||||++|++++++||||||+|+||||++||++|++|++
T Consensus 79 El~yagif~i~~~~~~~l~~il~i~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~Ly~~~~~q~~ 147 (147)
T pfam02556 79 EVKQAGIFTIRNVPEEQLHPFLGIECPNILFPYAREIISDLTRRGGFPPLMLAPINFDALYEQQLAQQQ 147 (147)
T ss_pred EEEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 987899999768998999878865055765278999999999716999735687589999999997449
No 4
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=312.35 Aligned_cols=144 Identities=38% Similarity=0.732 Sum_probs=138.5
Q ss_pred CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEE
Q ss_conf 13010123013011103788716776431015841588865121214654057999984046766543012577546899
Q gi|254780817|r 5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGIL 84 (152)
Q Consensus 5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif 84 (152)
.+|.|+|+++||||||||+|++|.+|. ++|.|.+++++|+.+++++++.|||.|+++++++.+++++|++|+.|+|||
T Consensus 9 ~qp~~~I~~~YvKDlSFE~P~aP~~f~--~~~~P~i~l~l~~~~~~l~e~~feVvL~itv~ak~~~~~~F~~Ev~qaGvF 86 (157)
T COG1952 9 GQPSFNIQRIYVKDLSFEAPNAPHIFQ--KDWQPEVNLDLNTNANQLAENVFEVVLTVTVTAKLGEKTAFLCEVQQAGIF 86 (157)
T ss_pred CCCEEEEEEEEEEEEEEECCCCCHHHH--HCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEEEEEEE
T ss_conf 996476311263333230799966667--503976156205021326887269999999999708726899999875589
Q ss_pred EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 975887103444666304553417899999999973899886605539899999999999864201
Q gi|254780817|r 85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL 150 (152)
Q Consensus 85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~ 150 (152)
.|.|++.+++.++|.++||++||||||++||+++++|||||++|+||||++||.+|++++++++++
T Consensus 87 ~i~~i~~e~m~~~L~i~CP~iLFPYaR~~Is~~t~~ggFPpl~L~PInF~aly~~~~~e~~~~e~~ 152 (157)
T COG1952 87 RIAGIPEEQMAHLLGIECPNILFPYARELISDLTARGGFPPLMLAPINFDALYAQRLAEQQAEEVA 152 (157)
T ss_pred EECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 971788788665564368343517799999888632898960128727899999999999887543
No 5
>cd00557 Translocase_SecB Preprotein translocase subunit SecB. SecB is a cytoplasmic component of the multisubunit membrane-bound enzyme termed Sec protein translocase, which is the main constituent of the General Secretory (type II) Pathway involved in translocation of nascent polypeptides across the cytoplasmic membrane. SecB has been shown to function as export-specific molecular chaperone that selectively binds preproteins, maintains them in a translocation competent state and delivers them to SecA, the membrane-bound ATPase, that drives the translocation reaction. In solution, SecB exists as homotetramer, which is organized as a dimer of dimers.
Probab=100.00 E-value=0 Score=307.25 Aligned_cols=129 Identities=31% Similarity=0.651 Sum_probs=123.0
Q ss_pred CHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCC-CCEEEEEEEEEECCCCCC-CCCEEEEEEEEEEEEE
Q ss_conf 01230130111037887167764310158415888651212146-540579999840467665-4301257754689997
Q gi|254780817|r 9 FTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTIS-GADFDVILSFDIEAKNND-KVIFRLELAYSGILRI 86 (152)
Q Consensus 9 ~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~-~~~~EV~l~l~~~ak~~~-~~~f~~Ei~yagif~i 86 (152)
|+|++|||||||||+|+||.+|. .+|+|++++++|+++++++ ++.|||+|+++++++.++ +++|++|++|||+|++
T Consensus 1 f~i~~~YiKDlSFE~P~ap~~f~--~~~~P~i~v~~~~~~~~l~~~n~~EV~L~i~~~a~~~d~~~~F~~El~yaGiF~i 78 (131)
T cd00557 1 LQIQRIYVKDISFEAPNAPHLFQ--KDWKPRLNLDLDTEITQLKNDNKYEVVLNITAGAKLEFAKSAFYCEVKQAGVFEI 78 (131)
T ss_pred CCEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEE
T ss_conf 94426887421533899805646--5679963589834630168897399999999999728882699998867779997
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 58871034446663045534178999999999738998866055398999999
Q gi|254780817|r 87 LDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQ 139 (152)
Q Consensus 87 ~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~ 139 (152)
.|+++++++++|+++||++||||||++|++++++|||||++|+||||++||++
T Consensus 79 ~~~~~e~~~~~L~i~cP~iLFPyaR~iIs~~t~~gGFppl~L~PInF~aly~n 131 (131)
T cd00557 79 IGIEIDQMAHCLEINCPAILFPYARELISSITARATFPPLNLPPINFDALFAN 131 (131)
T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf 69998999888872071766178999999887337988733486089998468
No 6
>TIGR00809 secB protein-export chaperone SecB; InterPro: IPR003708 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Recently, the tertiary structure of Haemophilus influenzae SecB (P44853 from SWISSPROT) was resolved by means of X-ray crystallography to 2.5A . The chaperone comprises four chains, forming a tetramer, each chain of which has a simple alpha+beta fold arrangement. While one binding site on the homotetramer recognises unfolded polypeptides by hydrophobic interactions, the second binds to SecA through the latter's C-terminal 22 residues.; GO: 0051082 unfolded protein binding, 0015031 protein transport, 0051262 protein tetramerization.
Probab=99.94 E-value=1.5e-26 Score=176.91 Aligned_cols=140 Identities=29% Similarity=0.646 Sum_probs=131.0
Q ss_pred CCCCCCHHHHEEEHHHCCCCCCHH-HHHHHHHCCCCEEEEEEEECCCCCCCC-EEEEEEEEEECCCCC-CCCCEEEEEEE
Q ss_conf 113010123013011103788716-776431015841588865121214654-057999984046766-54301257754
Q gi|254780817|r 4 KQKQAFTILNQYIKDFSFESPNAP-HCFFDIQNQQPTIKINVQVNANTISGA-DFDVILSFDIEAKNN-DKVIFRLELAY 80 (152)
Q Consensus 4 ~~~~~~~I~~qYIKDLSFE~P~ap-~~f~~~~~~~p~~~i~i~i~~~~l~~~-~~EV~l~l~~~ak~~-~~~~f~~Ei~y 80 (152)
...|.+.+.+.|+||+|||.|++| ..| ..+|.|++++.++..+..+.++ .|++.+.++++++.+ +.+.|.+|+.+
T Consensus 2 ~~~p~~~~~~~~~~d~~~~~p~~p~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (146)
T TIGR00809 2 ELQPVFSIERLYVKDLSLEAPNAPSHLF--LLDWEPEVDLDLDTGSTQLGDDNLYEVVLNVTVTAKLEDEETLFLCEVKQ 79 (146)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHH--HHCCCCCCCEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEECCC
T ss_conf 6540112233322110013667522445--42156642111012211024563246676667764036641211000000
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68999758871034446663045534178999999999738998866055398999999999998
Q gi|254780817|r 81 SGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIK 145 (152)
Q Consensus 81 agif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~ 145 (152)
+|+|.+.+++.++...++.+.||+++|||+|++++.++.+|||||+++.|+||.++|.+-.+++.
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~cp~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 144 (146)
T TIGR00809 80 AGVFNLAGLEGEQHPHLLGVHCPNLLFPYARELVSSLVSRGGFPPLNLAPVNFDALYHEYLQKQE 144 (146)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 23133215772013455433110233256777775432024655100031212578888775530
No 7
>KOG1424 consensus
Probab=55.22 E-value=2.9 Score=22.12 Aligned_cols=32 Identities=22% Similarity=0.510 Sum_probs=25.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 44666304553417899999999973899886
Q gi|254780817|r 95 SQILFVECPQLLFPFVRQIISNTIRDGGFPPL 126 (152)
Q Consensus 95 ~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l 126 (152)
..+.||+||-++||-.-..=+.++-+|-+|-=
T Consensus 359 ~~v~LCDCPGLVfPSf~~~r~emvl~GiLPID 390 (562)
T KOG1424 359 PSVCLCDCPGLVFPSFSPTRAEMVLNGILPID 390 (562)
T ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHCCCCHH
T ss_conf 87644478872156877106899881675189
No 8
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; InterPro: IPR010041 This family of proteins are annotated as either enolase-phosphatases or putative enolase-phosphatases. The methionine salvage pathway converts the methylthioribose moiety of 5'-(methylthio)-adenosine to methionine via a series of biochemical steps in a wide variety of organisms. One enzyme active in this pathway is a bifunctional enolase-phosphatase called E-1 that promotes oxidative cleavage of the synthetic substrate 2,3-diketo-1-phosphohexane to 2-keto-pentanoate; it has been purified from the Gram-negative bacterium Klebsiella pneumoniae . The unusual metabolite 2,3-diketo-5-methylthio-1-phosphopentane is oxidatively cleaved to yield formate (from C-1), 2-keto-4-methylthiobutyrate (the transamination product of methionine), and 3-methylthiopropionate by E-1. The native enzyme is a monomeric protein of M(r) 27,000 requiring magnesium ion as a cofactor . The cloning and analysis of E-1 from Klebsiella oxytoca has been reported . .
Probab=52.37 E-value=9.3 Score=19.15 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 045534178999999999738998-86
Q gi|254780817|r 101 ECPQLLFPFVRQIISNTIRDGGFP-PL 126 (152)
Q Consensus 101 ~~P~~lfP~~R~ii~~~~~~~Gfp-~l 126 (152)
-|-..||||||+-+...+++.-++ |+
T Consensus 17 FV~dvLFPYA~~~~~~f~~~~~~~~~~ 43 (240)
T TIGR01691 17 FVHDVLFPYAAKRLEAFVRDSYEEDDV 43 (240)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 120355667899999987521586614
No 9
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.89 E-value=29 Score=16.20 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=30.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 44466630455341789999999997389988660553989999999
Q gi|254780817|r 94 ISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQE 140 (152)
Q Consensus 94 l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~ 140 (152)
+-.-+++|.| +..-..+-+.+|-|||.|+.|=.-.|+-++
T Consensus 181 lT~~~tne~P-------q~~W~~iAResGIPpLHiDSILW~~lgg~~ 220 (243)
T COG4047 181 LTRKLTNEAP-------QKFWDKIARESGIPPLHIDSILWPLLGGER 220 (243)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHCCCCCCEECCEECCCCCCCC
T ss_conf 9998753147-------999999987439896213000002578755
No 10
>KOG2853 consensus
Probab=27.94 E-value=34 Score=15.87 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 1789999999997389988660553989999999
Q gi|254780817|r 107 FPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQE 140 (152)
Q Consensus 107 fP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~ 140 (152)
=|-+-+.|+.++.+|-|-.+.|.+.+|.-||..+
T Consensus 468 s~avgRAiaElIldG~f~tidLsrf~f~Rlv~~q 501 (509)
T KOG2853 468 SPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQ 501 (509)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCC
T ss_conf 6577899999986473368742301346776268
No 11
>KOG2423 consensus
Probab=25.10 E-value=15 Score=17.99 Aligned_cols=29 Identities=17% Similarity=0.584 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 344466630455341789999999997389
Q gi|254780817|r 93 HISQILFVECPQLLFPFVRQIISNTIRDGG 122 (152)
Q Consensus 93 ~l~~illv~~P~~lfP~~R~ii~~~~~~~G 122 (152)
.+..|.||+||.++||-. ..=.+++-+|-
T Consensus 350 LmkrIfLIDcPGvVyps~-dset~ivLkGv 378 (572)
T KOG2423 350 LMKRIFLIDCPGVVYPSS-DSETDIVLKGV 378 (572)
T ss_pred HHHCEEEECCCCCCCCCC-CCHHHHHHHCE
T ss_conf 872136744797248888-74677776412
No 12
>KOG2630 consensus
Probab=25.07 E-value=40 Score=15.44 Aligned_cols=21 Identities=14% Similarity=0.521 Sum_probs=14.2
Q ss_pred HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 304553417899999999973
Q gi|254780817|r 100 VECPQLLFPFVRQIISNTIRD 120 (152)
Q Consensus 100 v~~P~~lfP~~R~ii~~~~~~ 120 (152)
+.+...|||||++-+..++..
T Consensus 23 sfVkd~LFpya~~nV~~~v~~ 43 (254)
T KOG2630 23 SFVKDVLFPYAKENVEELVQE 43 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 888876648888779998417
No 13
>KOG3824 consensus
Probab=22.31 E-value=64 Score=14.22 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 9999999997389988660553989999
Q gi|254780817|r 110 VRQIISNTIRDGGFPPLVIDTIDFLKLF 137 (152)
Q Consensus 110 ~R~ii~~~~~~~Gfp~l~l~~IdF~~LY 137 (152)
.|=..--++..+||||+.|.+=-=.+-|
T Consensus 383 sRLLmNlilMraGyPPviipkeqRs~YY 410 (472)
T KOG3824 383 SRLLMNLILMRAGYPPVIIPKEQRSEYY 410 (472)
T ss_pred HHHHHHHHHHHCCCCCEEECHHHHHHHH
T ss_conf 8999999998569998540477766688
No 14
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.25 E-value=64 Score=14.21 Aligned_cols=64 Identities=17% Similarity=0.416 Sum_probs=46.3
Q ss_pred EEEEEEEEEEECC---CCCHHHHHHHH-HCC----------CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHH
Q ss_conf 5775468999758---87103444666-304----------5534178999999999738998866055398--999999
Q gi|254780817|r 76 LELAYSGILRILD---CPQEHISQILF-VEC----------PQLLFPFVRQIISNTIRDGGFPPLVIDTIDF--LKLFQQ 139 (152)
Q Consensus 76 ~Ei~yagif~i~~---~~~~~l~~ill-v~~----------P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF--~~LY~~ 139 (152)
.|.+--|.|+... ++.++|+-+.+ .-| -.+-||.+|.-+..+++.-||-|..=++.|- +++..|
T Consensus 26 ~etTVrg~F~~s~F~~Lt~d~LeFv~lf~r~RGnlKEvEr~lg~sYptvR~kld~vlramgy~p~~e~~~~i~~~~i~~q 105 (122)
T COG3877 26 CETTVRGNFKMSKFEYLTSDQLEFVELFLRCRGNLKEVERELGISYPTVRTKLDEVLRAMGYNPDSENSVNIGKKKIIDQ 105 (122)
T ss_pred CCCEEECCEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87457530622633235875768999999972579999999777617899899999998089989987045538999999
Done!