Query gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 116 out of 935 Neff 5.9 Searched_HMMs 33803 Date Wed Jun 1 13:27:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1qyn_A Protein-export protein 100.0 0 0 298.4 10.9 149 1-151 1-151 (153) 2 >1fx3_A SECB, protein-export p 100.0 0 0 291.7 12.2 145 5-151 14-160 (169) 3 >1yns_A E-1 enzyme; hydrolase 53.1 8.9 0.00026 18.9 2.2 16 105-120 2-17 (102) 4 >2g80_A Protein UTR4; YEL038W, 49.5 10 0.00031 18.5 2.1 20 103-122 4-23 (78) 5 >2ayi_A Aminopeptidase T; meta 27.3 28 0.00084 15.9 1.4 33 97-129 27-60 (148) 6 >1zjc_A Aminopeptidase AMPS; m 22.2 46 0.0014 14.7 1.7 34 96-129 29-63 (153) 7 >2qf7_A Pyruvate carboxylase p 17.7 70 0.0021 13.6 2.5 37 107-143 306-350 (388) 8 >3fnr_A Arginyl-tRNA synthetas 16.5 75 0.0022 13.4 2.4 38 100-139 28-65 (157) 9 >2k8f_B Cellular tumor antigen 15.6 46 0.0013 14.7 0.4 24 17-40 6-29 (39) 10 >2v7y_A Chaperone protein DNAK 13.6 87 0.0026 13.0 1.4 31 98-128 112-142 (183) No 1 >>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=298.40 Aligned_cols=149 Identities=28% Similarity=0.540 Sum_probs=140.8 Q ss_pred CCCCC--CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE Q ss_conf 98311--3010123013011103788716776431015841588865121214654057999984046766543012577 Q gi|254780817|r 1 MEKKQ--KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL 78 (152) Q Consensus 1 M~~~~--~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei 78 (152) |.+.. .|.|.|.++|+||||||+||+|.+| ...|.|++++++++++++++++.|||.|+++++++.++++.|++|+ T Consensus 1 m~e~~~~~~~~~i~~~Y~Kd~SfE~P~~p~~f--~~~~~p~i~i~i~v~~~~~~e~~~eV~L~i~v~a~~~~~~~F~iev 78 (153) T 1qyn_A 1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV 78 (153) T ss_dssp --------CEEEEEEEEEEEEEEECTTHHHHT--TSCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH--CCCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE T ss_conf 98655678708888789850354489981453--6467984478883353034686499999999997268834899999 Q ss_pred EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 5468999758871034446663045534178999999999738998866055398999999999998642014 Q gi|254780817|r 79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM 151 (152) Q Consensus 79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~ 151 (152) +|+|+|.+.|+++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++.. T Consensus 79 ~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfppl~LppINF~~ly~~~~~~~~~~~~~~ 151 (153) T 1qyn_A 79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEE 151 (153) T ss_dssp EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC--------- T ss_pred EEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 9999999737707778777863383888789999999999846999856787589999999999987641002 No 2 >>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} (A:) Probab=100.00 E-value=0 Score=291.67 Aligned_cols=145 Identities=27% Similarity=0.570 Sum_probs=136.1 Q ss_pred CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCC--CCCCCCEEEEEEEEE Q ss_conf 130101230130111037887167764310158415888651212146540579999840467--665430125775468 Q gi|254780817|r 5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAK--NNDKVIFRLELAYSG 82 (152) Q Consensus 5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak--~~~~~~f~~Ei~yag 82 (152) .+|+|+|+++|+||+|||+||+|.+|. .+|.|++++++++++++++++.|||.|+++++++ .++++.|++|+.|+| T Consensus 14 ~~p~~~i~~~yiKD~SfE~pn~p~~f~--~~~~p~i~~~~~~~~~~~~e~~~eV~L~l~v~~~~~~~~~~~F~iev~~~G 91 (169) T 1fx3_A 14 QQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAG 91 (169) T ss_dssp -CCEEEEEEEEEEEEEEECTTHHHHTS--SCCCCCCCCCEEEEEEEEETTEEEEEEEEEECCCCTTTCCCSCEEEEEEEE T ss_pred CCCCEEEEEEEEEECCCCCCCCCHHCC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE T ss_conf 498478764786503444889700025--467972578887412554787508999999986213477347888623899 Q ss_pred EEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 999758871034446663045534178999999999738998866055398999999999998642014 Q gi|254780817|r 83 ILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM 151 (152) Q Consensus 83 if~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~ 151 (152) +|.+.++++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++.. T Consensus 92 iF~i~~~~~e~~~~~L~i~~p~iLfPy~Re~Is~lt~~~gfpPl~LppINF~~ly~~~~~~~~~~~~~~ 160 (169) T 1fx3_A 92 VFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEE 160 (169) T ss_dssp EEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHHC--- T ss_pred EEEECCCCCHHHHCCHHHCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 997514660222010322375887758999999999847999856787589999999999987763046 No 3 >>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} (A:29-130) Probab=53.15 E-value=8.9 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.737 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 3417899999999973 Q gi|254780817|r 105 LLFPFVRQIISNTIRD 120 (152) Q Consensus 105 ~lfP~~R~ii~~~~~~ 120 (152) .||||+|+-+...++. T Consensus 2 vLFPYa~~~l~~fL~~ 17 (102) T 1yns_A 2 ILFPYIEENVKEYLQT 17 (102) T ss_dssp THHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 5448999999999998 No 4 >>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} (A:46-123) Probab=49.51 E-value=10 Score=18.49 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=15.8 Q ss_pred CHHHHHHHHHHHHHHHHHCC Q ss_conf 55341789999999997389 Q gi|254780817|r 103 PQLLFPFVRQIISNTIRDGG 122 (152) Q Consensus 103 P~~lfP~~R~ii~~~~~~~G 122 (152) -..||||+|+-+...++.-. T Consensus 4 ~dvLFPYar~~l~~~l~~~~ 23 (78) T 2g80_A 4 KETLFPYFTNKVPQLVQQDT 23 (78) T ss_dssp HHTHHHHHHHHHHHHHHSCC T ss_pred HHCCCHHHHHHHHHHHHHHC T ss_conf 33202999999999999826 No 5 >>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} (A:1-148) Probab=27.29 E-value=28 Score=15.92 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=23.1 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCC-CCCCC Q ss_conf 6663045534178999999999738998-86605 Q gi|254780817|r 97 ILFVECPQLLFPFVRQIISNTIRDGGFP-PLVID 129 (152) Q Consensus 97 illv~~P~~lfP~~R~ii~~~~~~~Gfp-~l~l~ 129 (152) .++|.||..-.|++|.+.-.+...|+.| -+.+. T Consensus 27 ~VlI~~~~~a~~l~r~i~~~ay~aGA~~V~v~~~ 60 (148) T 2ayi_A 27 EVIATAPIEAVDFVRLLAEKAYREGASLFTVIYG 60 (148) T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEC T ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 8999806654999999999999869972798607 No 6 >>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} (A:1-153) Probab=22.20 E-value=46 Score=14.69 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=25.7 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CCCCC Q ss_conf 46663045534178999999999738998-86605 Q gi|254780817|r 96 QILFVECPQLLFPFVRQIISNTIRDGGFP-PLVID 129 (152) Q Consensus 96 ~illv~~P~~lfP~~R~ii~~~~~~~Gfp-~l~l~ 129 (152) ..++|.||..-.|++|.+.-.+...|+.| -+.+. T Consensus 29 q~vlI~~~~~a~pL~r~l~k~ay~aGA~~V~v~~~ 63 (153) T 1zjc_A 29 QPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYS 63 (153) T ss_dssp CCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEE T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 98999856743999999999999869974899428 No 7 >>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020) Probab=17.74 E-value=70 Score=13.62 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHH--------CCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 17899999999973--------89988660553989999999999 Q gi|254780817|r 107 FPFVRQIISNTIRD--------GGFPPLVIDTIDFLKLFQQEKSL 143 (152) Q Consensus 107 fP~~R~ii~~~~~~--------~Gfp~l~l~~IdF~~LY~~~~~~ 143 (152) .-.+.+.+..+... -|+|--.|+|+||+++.++=++. T Consensus 306 l~~i~~~~~~~~~~~~~~~~~i~G~p~~~l~p~d~~~~~~~l~~~ 350 (388) T 2qf7_A 306 IRRISFYWEAVRNQYAAFESDLKGPPGSLLKEADLDAERKVIEKK 350 (388) T ss_dssp HHHHHHHHHHHHGGGGGGCCCCCSCGGGGSCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 887666799999987553145557721148855779999999975 No 8 >>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} (A:1-24,A:332-464) Probab=16.46 E-value=75 Score=13.44 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=29.7 Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 3045534178999999999738998866055398999999 Q gi|254780817|r 100 VECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQ 139 (152) Q Consensus 100 v~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~ 139 (152) =-+|-+.|-++| +.++.++++-..+.++++||.-+-.+ T Consensus 28 Ntg~YiQYa~AR--~~SIlrKa~~~~~~~~~~~~~l~~~~ 65 (157) T 3fnr_A 28 NPVYYINYAHAR--IHQVFAKAGKKIDDVMKADLQSLNQD 65 (157) T ss_dssp SHHHHHHHHHHH--HHHHHHHTTCCTTTSTTCCCTTCCHH T ss_pred CCEEHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 632102457899--99999982444331012554218988 No 9 >>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens} (B:) Probab=15.60 E-value=46 Score=14.70 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.5 Q ss_pred HHHCCCCCCHHHHHHHHHCCCCEE Q ss_conf 111037887167764310158415 Q gi|254780817|r 17 KDFSFESPNAPHCFFDIQNQQPTI 40 (152) Q Consensus 17 KDLSFE~P~ap~~f~~~~~~~p~~ 40 (152) -|+|.|-|-+++.|...++--|.- T Consensus 6 sdlsiepPLSQETFsdLWkLLP~n 29 (39) T 2k8f_B 6 SDPSVEPPLSQETFSDLWKLLPEN 29 (39) T ss_dssp CCSSCCCCCSCHHHHHHHHTCSSS T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 555658872167899999867843 No 10 >>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:1-156,A:333-359) Probab=13.61 E-value=87 Score=13.04 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=24.8 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 6630455341789999999997389988660 Q gi|254780817|r 98 LFVECPQLLFPFVRQIISNTIRDGGFPPLVI 128 (152) Q Consensus 98 llv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l 128 (152) +.+-+|.-..+..|+.+.+..+.+||+.+.+ T Consensus 112 vVItVPa~~~~~qR~~~~~aa~~aG~~~V~l 142 (183) T 2v7y_A 112 AVITVPAYFNDAQRQATKDAGRIAGLEVERI 142 (183) T ss_dssp EEEEECTTCCHHHHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999899999899999999999859965787 Done!