Query         gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    116 out of 935
Neff          5.9 
Searched_HMMs 33803
Date          Wed Jun  1 13:27:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1qyn_A Protein-export protein 100.0       0       0  298.4  10.9  149    1-151     1-151 (153)
  2 >1fx3_A SECB, protein-export p 100.0       0       0  291.7  12.2  145    5-151    14-160 (169)
  3 >1yns_A E-1 enzyme; hydrolase   53.1     8.9 0.00026   18.9   2.2   16  105-120     2-17  (102)
  4 >2g80_A Protein UTR4; YEL038W,  49.5      10 0.00031   18.5   2.1   20  103-122     4-23  (78)
  5 >2ayi_A Aminopeptidase T; meta  27.3      28 0.00084   15.9   1.4   33   97-129    27-60  (148)
  6 >1zjc_A Aminopeptidase AMPS; m  22.2      46  0.0014   14.7   1.7   34   96-129    29-63  (153)
  7 >2qf7_A Pyruvate carboxylase p  17.7      70  0.0021   13.6   2.5   37  107-143   306-350 (388)
  8 >3fnr_A Arginyl-tRNA synthetas  16.5      75  0.0022   13.4   2.4   38  100-139    28-65  (157)
  9 >2k8f_B Cellular tumor antigen  15.6      46  0.0013   14.7   0.4   24   17-40      6-29  (39)
 10 >2v7y_A Chaperone protein DNAK  13.6      87  0.0026   13.0   1.4   31   98-128   112-142 (183)

No 1  
>>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} (A:)
Probab=100.00  E-value=0  Score=298.40  Aligned_cols=149  Identities=28%  Similarity=0.540  Sum_probs=140.8

Q ss_pred             CCCCC--CCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE
Q ss_conf             98311--3010123013011103788716776431015841588865121214654057999984046766543012577
Q gi|254780817|r    1 MEKKQ--KQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL   78 (152)
Q Consensus         1 M~~~~--~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei   78 (152)
                      |.+..  .|.|.|.++|+||||||+||+|.+|  ...|.|++++++++++++++++.|||.|+++++++.++++.|++|+
T Consensus         1 m~e~~~~~~~~~i~~~Y~Kd~SfE~P~~p~~f--~~~~~p~i~i~i~v~~~~~~e~~~eV~L~i~v~a~~~~~~~F~iev   78 (153)
T 1qyn_A            1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV   78 (153)
T ss_dssp             --------CEEEEEEEEEEEEEEECTTHHHHT--TSCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHH--CCCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             98655678708888789850354489981453--6467984478883353034686499999999997268834899999


Q ss_pred             EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             5468999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
                      +|+|+|.+.|+++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++..
T Consensus        79 ~~~GiF~i~~i~~e~~~~~l~i~~p~iLfPY~R~~Vs~lt~~~gfppl~LppINF~~ly~~~~~~~~~~~~~~  151 (153)
T 1qyn_A           79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEE  151 (153)
T ss_dssp             EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC---------
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999737707778777863383888789999999999846999856787589999999999987641002


No 2  
>>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} (A:)
Probab=100.00  E-value=0  Score=291.67  Aligned_cols=145  Identities=27%  Similarity=0.570  Sum_probs=136.1

Q ss_pred             CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCC--CCCCCCEEEEEEEEE
Q ss_conf             130101230130111037887167764310158415888651212146540579999840467--665430125775468
Q gi|254780817|r    5 QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAK--NNDKVIFRLELAYSG   82 (152)
Q Consensus         5 ~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak--~~~~~~f~~Ei~yag   82 (152)
                      .+|+|+|+++|+||+|||+||+|.+|.  .+|.|++++++++++++++++.|||.|+++++++  .++++.|++|+.|+|
T Consensus        14 ~~p~~~i~~~yiKD~SfE~pn~p~~f~--~~~~p~i~~~~~~~~~~~~e~~~eV~L~l~v~~~~~~~~~~~F~iev~~~G   91 (169)
T 1fx3_A           14 QQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAG   91 (169)
T ss_dssp             -CCEEEEEEEEEEEEEEECTTHHHHTS--SCCCCCCCCCEEEEEEEEETTEEEEEEEEEECCCCTTTCCCSCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCHHCC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf             498478764786503444889700025--467972578887412554787508999999986213477347888623899


Q ss_pred             EEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r   83 ILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM  151 (152)
Q Consensus        83 if~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~  151 (152)
                      +|.+.++++++++++|+++||++||||+|++|+++|++|||||++|+||||.+||++++++++++++..
T Consensus        92 iF~i~~~~~e~~~~~L~i~~p~iLfPy~Re~Is~lt~~~gfpPl~LppINF~~ly~~~~~~~~~~~~~~  160 (169)
T 1fx3_A           92 VFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEE  160 (169)
T ss_dssp             EEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHHC---
T ss_pred             EEEECCCCCHHHHCCHHHCCHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             997514660222010322375887758999999999847999856787589999999999987763046


No 3  
>>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} (A:29-130)
Probab=53.15  E-value=8.9  Score=18.89  Aligned_cols=16  Identities=19%  Similarity=0.737  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             3417899999999973
Q gi|254780817|r  105 LLFPFVRQIISNTIRD  120 (152)
Q Consensus       105 ~lfP~~R~ii~~~~~~  120 (152)
                      .||||+|+-+...++.
T Consensus         2 vLFPYa~~~l~~fL~~   17 (102)
T 1yns_A            2 ILFPYIEENVKEYLQT   17 (102)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             5448999999999998


No 4  
>>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), structural genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} (A:46-123)
Probab=49.51  E-value=10  Score=18.49  Aligned_cols=20  Identities=15%  Similarity=0.491  Sum_probs=15.8

Q ss_pred             CHHHHHHHHHHHHHHHHHCC
Q ss_conf             55341789999999997389
Q gi|254780817|r  103 PQLLFPFVRQIISNTIRDGG  122 (152)
Q Consensus       103 P~~lfP~~R~ii~~~~~~~G  122 (152)
                      -..||||+|+-+...++.-.
T Consensus         4 ~dvLFPYar~~l~~~l~~~~   23 (78)
T 2g80_A            4 KETLFPYFTNKVPQLVQQDT   23 (78)
T ss_dssp             HHTHHHHHHHHHHHHHHSCC
T ss_pred             HHCCCHHHHHHHHHHHHHHC
T ss_conf             33202999999999999826


No 5  
>>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} (A:1-148)
Probab=27.29  E-value=28  Score=15.92  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf             6663045534178999999999738998-86605
Q gi|254780817|r   97 ILFVECPQLLFPFVRQIISNTIRDGGFP-PLVID  129 (152)
Q Consensus        97 illv~~P~~lfP~~R~ii~~~~~~~Gfp-~l~l~  129 (152)
                      .++|.||..-.|++|.+.-.+...|+.| -+.+.
T Consensus        27 ~VlI~~~~~a~~l~r~i~~~ay~aGA~~V~v~~~   60 (148)
T 2ayi_A           27 EVIATAPIEAVDFVRLLAEKAYREGASLFTVIYG   60 (148)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999806654999999999999869972798607


No 6  
>>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} (A:1-153)
Probab=22.20  E-value=46  Score=14.69  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf             46663045534178999999999738998-86605
Q gi|254780817|r   96 QILFVECPQLLFPFVRQIISNTIRDGGFP-PLVID  129 (152)
Q Consensus        96 ~illv~~P~~lfP~~R~ii~~~~~~~Gfp-~l~l~  129 (152)
                      ..++|.||..-.|++|.+.-.+...|+.| -+.+.
T Consensus        29 q~vlI~~~~~a~pL~r~l~k~ay~aGA~~V~v~~~   63 (153)
T 1zjc_A           29 QPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYS   63 (153)
T ss_dssp             CCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             98999856743999999999999869974899428


No 7  
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020)
Probab=17.74  E-value=70  Score=13.62  Aligned_cols=37  Identities=8%  Similarity=-0.033  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHH--------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             17899999999973--------89988660553989999999999
Q gi|254780817|r  107 FPFVRQIISNTIRD--------GGFPPLVIDTIDFLKLFQQEKSL  143 (152)
Q Consensus       107 fP~~R~ii~~~~~~--------~Gfp~l~l~~IdF~~LY~~~~~~  143 (152)
                      .-.+.+.+..+...        -|+|--.|+|+||+++.++=++.
T Consensus       306 l~~i~~~~~~~~~~~~~~~~~i~G~p~~~l~p~d~~~~~~~l~~~  350 (388)
T 2qf7_A          306 IRRISFYWEAVRNQYAAFESDLKGPPGSLLKEADLDAERKVIEKK  350 (388)
T ss_dssp             HHHHHHHHHHHHGGGGGGCCCCCSCGGGGSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             887666799999987553145557721148855779999999975


No 8  
>>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} (A:1-24,A:332-464)
Probab=16.46  E-value=75  Score=13.44  Aligned_cols=38  Identities=16%  Similarity=0.095  Sum_probs=29.7

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf             3045534178999999999738998866055398999999
Q gi|254780817|r  100 VECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQ  139 (152)
Q Consensus       100 v~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~  139 (152)
                      =-+|-+.|-++|  +.++.++++-..+.++++||.-+-.+
T Consensus        28 Ntg~YiQYa~AR--~~SIlrKa~~~~~~~~~~~~~l~~~~   65 (157)
T 3fnr_A           28 NPVYYINYAHAR--IHQVFAKAGKKIDDVMKADLQSLNQD   65 (157)
T ss_dssp             SHHHHHHHHHHH--HHHHHHHTTCCTTTSTTCCCTTCCHH
T ss_pred             CCEEHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             632102457899--99999982444331012554218988


No 9  
>>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens} (B:)
Probab=15.60  E-value=46  Score=14.70  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             HHHCCCCCCHHHHHHHHHCCCCEE
Q ss_conf             111037887167764310158415
Q gi|254780817|r   17 KDFSFESPNAPHCFFDIQNQQPTI   40 (152)
Q Consensus        17 KDLSFE~P~ap~~f~~~~~~~p~~   40 (152)
                      -|+|.|-|-+++.|...++--|.-
T Consensus         6 sdlsiepPLSQETFsdLWkLLP~n   29 (39)
T 2k8f_B            6 SDPSVEPPLSQETFSDLWKLLPEN   29 (39)
T ss_dssp             CCSSCCCCCSCHHHHHHHHTCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             555658872167899999867843


No 10 
>>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} (A:1-156,A:333-359)
Probab=13.61  E-value=87  Score=13.04  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=24.8

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6630455341789999999997389988660
Q gi|254780817|r   98 LFVECPQLLFPFVRQIISNTIRDGGFPPLVI  128 (152)
Q Consensus        98 llv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l  128 (152)
                      +.+-+|.-..+..|+.+.+..+.+||+.+.+
T Consensus       112 vVItVPa~~~~~qR~~~~~aa~~aG~~~V~l  142 (183)
T 2v7y_A          112 AVITVPAYFNDAQRQATKDAGRIAGLEVERI  142 (183)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999899999899999999999859965787


Done!