Query         gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs    116 out of 935
Neff          5.9 
Searched_HMMs 13730
Date          Wed Jun  1 06:52:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1ozba_ d.33.1.1 (A:) Bacteria 100.0       0       0  313.9  12.4  141    7-149     1-143 (144)
  2 d1qyna_ d.33.1.1 (A:) Bacteria 100.0       0       0  312.7  10.9  134    7-142     1-134 (134)
  3 d2ccva1 b.154.1.1 (A:1-99) Agg   8.0      57  0.0042   11.8   1.8   18    7-24     23-40  (99)
  4 d1iiea_ a.109.1.1 (A:) Class I   7.6      26  0.0019   13.8  -1.0   31   88-118     3-33  (75)
  5 d1lvaa3 a.4.5.35 (A:511-574) C   6.1      72  0.0053   11.2   1.9   21  109-129     7-27  (64)
  6 d1w1ha_ b.55.1.1 (A:) 3-phosph   6.0      53  0.0038   12.0  -0.1   11   12-22      3-13  (147)
  7 d1wu7a2 d.104.1.1 (A:3-329) Hi   5.9      74  0.0054   11.2   1.7   10   77-86    119-128 (327)
  8 d2fi0a1 a.248.1.1 (A:3-81) Hyp   5.8      49  0.0036   12.2  -0.4   18  106-127    19-36  (79)
  9 d1kmma2 d.104.1.1 (A:4-325) Hi   5.0      85  0.0062   10.8   2.5   15  114-128   145-159 (322)
 10 d1qe0a2 d.104.1.1 (A:1-325) Hi   4.8      88  0.0064   10.7   1.5   29  112-140   145-176 (325)

No 1  
>d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Haemophilus influenzae [TaxId: 727]}
Probab=100.00  E-value=0  Score=313.89  Aligned_cols=141  Identities=27%  Similarity=0.575  Sum_probs=132.3

Q ss_pred             CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEEEEE
Q ss_conf             01012301301110378871677643101584158886512121465405799998404676--6543012577546899
Q gi|254780817|r    7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYSGIL   84 (152)
Q Consensus         7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~yagif   84 (152)
                      |+|+|+++||||||||+||+|.+|.  .+|.|++++++|+++++++++.|||.|+++++++.  +++++|++|++|||+|
T Consensus         1 P~f~I~~~YiKDlSFE~Pn~p~~f~--~~~~p~~~~~i~i~~~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~e~~yagif   78 (144)
T d1ozba_           1 PVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVF   78 (144)
T ss_dssp             CEEEEEEEEEEEEEEECTTTTGGGG--SCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf             9604867887612333899825645--35588557888632442477741799999997413455553189987589999


Q ss_pred             EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             97588710344466630455341789999999997389988660553989999999999986420
Q gi|254780817|r   85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG  149 (152)
Q Consensus        85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~  149 (152)
                      .+.+.++++++++++|+||++||||||++|++++++|||||++|+||||++||++|++|++++++
T Consensus        79 ~i~~~~~~~~~~illi~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~ly~~~~~q~~~~~~  143 (144)
T d1ozba_          79 TISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENA  143 (144)
T ss_dssp             EEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSHHHHHHHHHHHHHHSC
T ss_pred             EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             95489878863567406728888899999999998469998467875899999999999887605


No 2  
>d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=312.68  Aligned_cols=134  Identities=30%  Similarity=0.598  Sum_probs=129.4

Q ss_pred             CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             01012301301110378871677643101584158886512121465405799998404676654301257754689997
Q gi|254780817|r    7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGILRI   86 (152)
Q Consensus         7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif~i   86 (152)
                      |+|+|+++||||||||+|++|++|.  .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|++|||+|++
T Consensus         1 m~f~I~~~YiKDlSFE~P~~~~~f~--~~~~p~~~i~~~i~~~~~~~~~~Ev~l~l~~~~k~~~~~~f~~Ev~yagvf~i   78 (134)
T d1qyna_           1 MTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSI   78 (134)
T ss_dssp             CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEECCCCCCCCCHHHHC--CCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEE
T ss_conf             9679988998503543899805637--57798458988505421578779999999999835885146899999999999


Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58871034446663045534178999999999738998866055398999999999
Q gi|254780817|r   87 LDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKS  142 (152)
Q Consensus        87 ~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~  142 (152)
                      .+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++
T Consensus        79 ~~~~~~~~~~il~i~~P~~lfP~~R~ii~~l~~~gGfppl~L~pIdF~~Ly~~~~~  134 (134)
T d1qyna_          79 AGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ  134 (134)
T ss_dssp             ESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC
T ss_pred             EECCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             50661442000221573888789999999999846999856687589999998619


No 3  
>d2ccva1 b.154.1.1 (A:1-99) Agglutinin HPA {Roman snail (Helix pomatia) [TaxId: 6536]}
Probab=8.03  E-value=57  Score=11.81  Aligned_cols=18  Identities=22%  Similarity=0.351  Sum_probs=12.6

Q ss_pred             CCCHHHHEEEHHHCCCCC
Q ss_conf             010123013011103788
Q gi|254780817|r    7 QAFTILNQYIKDFSFESP   24 (152)
Q Consensus         7 ~~~~I~~qYIKDLSFE~P   24 (152)
                      |.-.--+++.|+++|..|
T Consensus        23 p~~~~~R~~~~~I~F~~~   40 (99)
T d2ccva1          23 PGRDNTRELAKNITFASP   40 (99)
T ss_dssp             TTCCSCEEEEEEEECSSC
T ss_pred             CCCCCCEEEEEEEECCHH
T ss_conf             665775289998173910


No 4  
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.62  E-value=26  Score=13.81  Aligned_cols=31  Identities=13%  Similarity=0.382  Sum_probs=24.0

Q ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             8871034446663045534178999999999
Q gi|254780817|r   88 DCPQEHISQILFVECPQLLFPFVRQIISNTI  118 (152)
Q Consensus        88 ~~~~~~l~~illv~~P~~lfP~~R~ii~~~~  118 (152)
                      |..++++..+|+-.-|.-.||-+.+.|..=+
T Consensus         3 N~tedqVk~LL~~~~P~k~~P~ln~sf~~NL   33 (75)
T d1iiea_           3 NMTEDHVMHLLQNADPLKVYPPLKGSFPENL   33 (75)
T ss_dssp             SSCHHHHHHHHHHHCTTCCCCCCCSCHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHCHHHHHHHHHHH
T ss_conf             5179999999966670112424678999999


No 5  
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=6.07  E-value=72  Score=11.22  Aligned_cols=21  Identities=10%  Similarity=0.145  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             899999999973899886605
Q gi|254780817|r  109 FVRQIISNTIRDGGFPPLVID  129 (152)
Q Consensus       109 ~~R~ii~~~~~~~Gfp~l~l~  129 (152)
                      -+++-|..+++.|||-|-.+.
T Consensus         7 ~l~~~I~~~~~~~g~~PP~vr   27 (64)
T d1lvaa3           7 KLLKDLEDKYRVSRWQPPSFK   27 (64)
T ss_dssp             HHHHHHHHHHHHHTTSCCBHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHH
T ss_conf             999999999998699999599


No 6  
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.99  E-value=53  Score=12.02  Aligned_cols=11  Identities=36%  Similarity=0.730  Sum_probs=6.8

Q ss_pred             HHEEEHHHCCC
Q ss_conf             30130111037
Q gi|254780817|r   12 LNQYIKDFSFE   22 (152)
Q Consensus        12 ~~qYIKDLSFE   22 (152)
                      +.|||+||.-.
T Consensus         3 ~~~~~~~l~~~   13 (147)
T d1w1ha_           3 IEQYIHDLDSN   13 (147)
T ss_dssp             GGGGEEEEETT
T ss_pred             HHHHHHHHCCC
T ss_conf             78999884011


No 7  
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.95  E-value=74  Score=11.17  Aligned_cols=10  Identities=10%  Similarity=-0.356  Sum_probs=5.4

Q ss_pred             EEEEEEEEEE
Q ss_conf             7754689997
Q gi|254780817|r   77 ELAYSGILRI   86 (152)
Q Consensus        77 Ei~yagif~i   86 (152)
                      |..|+|+=-+
T Consensus       119 e~~Q~G~Eii  128 (327)
T d1wu7a2         119 EHYQFNADIF  128 (327)
T ss_dssp             EEEEEEEEEE
T ss_pred             HHHHHHHHHC
T ss_conf             1123234333


No 8  
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=5.84  E-value=49  Score=12.21  Aligned_cols=18  Identities=39%  Similarity=0.639  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             4178999999999738998866
Q gi|254780817|r  106 LFPFVRQIISNTIRDGGFPPLV  127 (152)
Q Consensus       106 lfP~~R~ii~~~~~~~Gfp~l~  127 (152)
                      =||.+..++.++    ||.+|.
T Consensus        19 ~yPe~~~il~~~----GF~~l~   36 (79)
T d2fi0a1          19 KHPEVLEILVEL----GFKPLA   36 (79)
T ss_dssp             HCGGGHHHHTTT----TCGGGG
T ss_pred             HCHHHHHHHHHC----CCHHHC
T ss_conf             794899999986----925208


No 9  
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=4.96  E-value=85  Score=10.80  Aligned_cols=15  Identities=20%  Similarity=0.089  Sum_probs=7.3

Q ss_pred             HHHHHHHCCCCCCCC
Q ss_conf             999997389988660
Q gi|254780817|r  114 ISNTIRDGGFPPLVI  128 (152)
Q Consensus       114 i~~~~~~~Gfp~l~l  128 (152)
                      +..++...|+....+
T Consensus       145 ~~~~l~~lgl~~~~~  159 (322)
T d1kmma2         145 TARWWRALGISEHVT  159 (322)
T ss_dssp             HHHHHHHHTCGGGCE
T ss_pred             HHHHHHHCCCCCEEE
T ss_conf             999998618875058


No 10 
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=4.78  E-value=88  Score=10.73  Aligned_cols=29  Identities=10%  Similarity=0.087  Sum_probs=16.4

Q ss_pred             HHHHHHHHHCCCCCCCCC--C-CCHHHHHHHH
Q ss_conf             999999973899886605--5-3989999999
Q gi|254780817|r  112 QIISNTIRDGGFPPLVID--T-IDFLKLFQQE  140 (152)
Q Consensus       112 ~ii~~~~~~~Gfp~l~l~--~-IdF~~LY~~~  140 (152)
                      .+....++..|+.++.+.  . -.+..+....
T Consensus       145 ~l~~~~l~~~g~~~~~i~i~~~~~~~~~~~~~  176 (325)
T d1qe0a2         145 AMVMHIYQSFGLKHLKLVINSVGDMASRKEYN  176 (325)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
T ss_conf             99999998627767423554544088888888


Done!