Query gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 152 No_of_seqs 116 out of 935 Neff 5.9 Searched_HMMs 13730 Date Wed Jun 1 06:52:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ozba_ d.33.1.1 (A:) Bacteria 100.0 0 0 313.9 12.4 141 7-149 1-143 (144) 2 d1qyna_ d.33.1.1 (A:) Bacteria 100.0 0 0 312.7 10.9 134 7-142 1-134 (134) 3 d2ccva1 b.154.1.1 (A:1-99) Agg 8.0 57 0.0042 11.8 1.8 18 7-24 23-40 (99) 4 d1iiea_ a.109.1.1 (A:) Class I 7.6 26 0.0019 13.8 -1.0 31 88-118 3-33 (75) 5 d1lvaa3 a.4.5.35 (A:511-574) C 6.1 72 0.0053 11.2 1.9 21 109-129 7-27 (64) 6 d1w1ha_ b.55.1.1 (A:) 3-phosph 6.0 53 0.0038 12.0 -0.1 11 12-22 3-13 (147) 7 d1wu7a2 d.104.1.1 (A:3-329) Hi 5.9 74 0.0054 11.2 1.7 10 77-86 119-128 (327) 8 d2fi0a1 a.248.1.1 (A:3-81) Hyp 5.8 49 0.0036 12.2 -0.4 18 106-127 19-36 (79) 9 d1kmma2 d.104.1.1 (A:4-325) Hi 5.0 85 0.0062 10.8 2.5 15 114-128 145-159 (322) 10 d1qe0a2 d.104.1.1 (A:1-325) Hi 4.8 88 0.0064 10.7 1.5 29 112-140 145-176 (325) No 1 >d1ozba_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Haemophilus influenzae [TaxId: 727]} Probab=100.00 E-value=0 Score=313.89 Aligned_cols=141 Identities=27% Similarity=0.575 Sum_probs=132.3 Q ss_pred CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEEEEE Q ss_conf 01012301301110378871677643101584158886512121465405799998404676--6543012577546899 Q gi|254780817|r 7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYSGIL 84 (152) Q Consensus 7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~yagif 84 (152) |+|+|+++||||||||+||+|.+|. .+|.|++++++|+++++++++.|||.|+++++++. +++++|++|++|||+| T Consensus 1 P~f~I~~~YiKDlSFE~Pn~p~~f~--~~~~p~~~~~i~i~~~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~e~~yagif 78 (144) T d1ozba_ 1 PVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVF 78 (144) T ss_dssp CEEEEEEEEEEEEEEECTTTTGGGG--SCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEE T ss_pred CCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEEEEE T ss_conf 9604867887612333899825645--35588557888632442477741799999997413455553189987589999 Q ss_pred EECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 97588710344466630455341789999999997389988660553989999999999986420 Q gi|254780817|r 85 RILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEG 149 (152) Q Consensus 85 ~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~ 149 (152) .+.+.++++++++++|+||++||||||++|++++++|||||++|+||||++||++|++|++++++ T Consensus 79 ~i~~~~~~~~~~illi~~P~~lFP~~R~ii~~l~~~gGFppl~l~pIdF~~ly~~~~~q~~~~~~ 143 (144) T d1ozba_ 79 TISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENA 143 (144) T ss_dssp EEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSHHHHHHHHHHHHHHSC T ss_pred EECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 95489878863567406728888899999999998469998467875899999999999887605 No 2 >d1qyna_ d.33.1.1 (A:) Bacterial protein-export protein SecB {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=312.68 Aligned_cols=134 Identities=30% Similarity=0.598 Sum_probs=129.4 Q ss_pred CCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEE Q ss_conf 01012301301110378871677643101584158886512121465405799998404676654301257754689997 Q gi|254780817|r 7 QAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGILRI 86 (152) Q Consensus 7 ~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei~yagif~i 86 (152) |+|+|+++||||||||+|++|++|. .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|++|||+|++ T Consensus 1 m~f~I~~~YiKDlSFE~P~~~~~f~--~~~~p~~~i~~~i~~~~~~~~~~Ev~l~l~~~~k~~~~~~f~~Ev~yagvf~i 78 (134) T d1qyna_ 1 MTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSI 78 (134) T ss_dssp CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE T ss_pred CEEEEEEEEEECCCCCCCCCHHHHC--CCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEEE T ss_conf 9679988998503543899805637--57798458988505421578779999999999835885146899999999999 Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 58871034446663045534178999999999738998866055398999999999 Q gi|254780817|r 87 LDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKS 142 (152) Q Consensus 87 ~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~ 142 (152) .+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++ T Consensus 79 ~~~~~~~~~~il~i~~P~~lfP~~R~ii~~l~~~gGfppl~L~pIdF~~Ly~~~~~ 134 (134) T d1qyna_ 79 AGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQ 134 (134) T ss_dssp ESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC T ss_pred EECCHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC T ss_conf 50661442000221573888789999999999846999856687589999998619 No 3 >d2ccva1 b.154.1.1 (A:1-99) Agglutinin HPA {Roman snail (Helix pomatia) [TaxId: 6536]} Probab=8.03 E-value=57 Score=11.81 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.6 Q ss_pred CCCHHHHEEEHHHCCCCC Q ss_conf 010123013011103788 Q gi|254780817|r 7 QAFTILNQYIKDFSFESP 24 (152) Q Consensus 7 ~~~~I~~qYIKDLSFE~P 24 (152) |.-.--+++.|+++|..| T Consensus 23 p~~~~~R~~~~~I~F~~~ 40 (99) T d2ccva1 23 PGRDNTRELAKNITFASP 40 (99) T ss_dssp TTCCSCEEEEEEEECSSC T ss_pred CCCCCCEEEEEEEECCHH T ss_conf 665775289998173910 No 4 >d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]} Probab=7.62 E-value=26 Score=13.81 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=24.0 Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 8871034446663045534178999999999 Q gi|254780817|r 88 DCPQEHISQILFVECPQLLFPFVRQIISNTI 118 (152) Q Consensus 88 ~~~~~~l~~illv~~P~~lfP~~R~ii~~~~ 118 (152) |..++++..+|+-.-|.-.||-+.+.|..=+ T Consensus 3 N~tedqVk~LL~~~~P~k~~P~ln~sf~~NL 33 (75) T d1iiea_ 3 NMTEDHVMHLLQNADPLKVYPPLKGSFPENL 33 (75) T ss_dssp SSCHHHHHHHHHHHCTTCCCCCCCSCHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHCHHHHHHHHHHH T ss_conf 5179999999966670112424678999999 No 5 >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=6.07 E-value=72 Score=11.22 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCC Q ss_conf 899999999973899886605 Q gi|254780817|r 109 FVRQIISNTIRDGGFPPLVID 129 (152) Q Consensus 109 ~~R~ii~~~~~~~Gfp~l~l~ 129 (152) -+++-|..+++.|||-|-.+. T Consensus 7 ~l~~~I~~~~~~~g~~PP~vr 27 (64) T d1lvaa3 7 KLLKDLEDKYRVSRWQPPSFK 27 (64) T ss_dssp HHHHHHHHHHHHHTTSCCBHH T ss_pred HHHHHHHHHHHHCCCCCCCHH T ss_conf 999999999998699999599 No 6 >d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.99 E-value=53 Score=12.02 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=6.8 Q ss_pred HHEEEHHHCCC Q ss_conf 30130111037 Q gi|254780817|r 12 LNQYIKDFSFE 22 (152) Q Consensus 12 ~~qYIKDLSFE 22 (152) +.|||+||.-. T Consensus 3 ~~~~~~~l~~~ 13 (147) T d1w1ha_ 3 IEQYIHDLDSN 13 (147) T ss_dssp GGGGEEEEETT T ss_pred HHHHHHHHCCC T ss_conf 78999884011 No 7 >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=5.95 E-value=74 Score=11.17 Aligned_cols=10 Identities=10% Similarity=-0.356 Sum_probs=5.4 Q ss_pred EEEEEEEEEE Q ss_conf 7754689997 Q gi|254780817|r 77 ELAYSGILRI 86 (152) Q Consensus 77 Ei~yagif~i 86 (152) |..|+|+=-+ T Consensus 119 e~~Q~G~Eii 128 (327) T d1wu7a2 119 EHYQFNADIF 128 (327) T ss_dssp EEEEEEEEEE T ss_pred HHHHHHHHHC T ss_conf 1123234333 No 8 >d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]} Probab=5.84 E-value=49 Score=12.21 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC Q ss_conf 4178999999999738998866 Q gi|254780817|r 106 LFPFVRQIISNTIRDGGFPPLV 127 (152) Q Consensus 106 lfP~~R~ii~~~~~~~Gfp~l~ 127 (152) =||.+..++.++ ||.+|. T Consensus 19 ~yPe~~~il~~~----GF~~l~ 36 (79) T d2fi0a1 19 KHPEVLEILVEL----GFKPLA 36 (79) T ss_dssp HCGGGHHHHTTT----TCGGGG T ss_pred HCHHHHHHHHHC----CCHHHC T ss_conf 794899999986----925208 No 9 >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Probab=4.96 E-value=85 Score=10.80 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=7.3 Q ss_pred HHHHHHHCCCCCCCC Q ss_conf 999997389988660 Q gi|254780817|r 114 ISNTIRDGGFPPLVI 128 (152) Q Consensus 114 i~~~~~~~Gfp~l~l 128 (152) +..++...|+....+ T Consensus 145 ~~~~l~~lgl~~~~~ 159 (322) T d1kmma2 145 TARWWRALGISEHVT 159 (322) T ss_dssp HHHHHHHHTCGGGCE T ss_pred HHHHHHHCCCCCEEE T ss_conf 999998618875058 No 10 >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Probab=4.78 E-value=88 Score=10.73 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=16.4 Q ss_pred HHHHHHHHHCCCCCCCCC--C-CCHHHHHHHH Q ss_conf 999999973899886605--5-3989999999 Q gi|254780817|r 112 QIISNTIRDGGFPPLVID--T-IDFLKLFQQE 140 (152) Q Consensus 112 ~ii~~~~~~~Gfp~l~l~--~-IdF~~LY~~~ 140 (152) .+....++..|+.++.+. . -.+..+.... T Consensus 145 ~l~~~~l~~~g~~~~~i~i~~~~~~~~~~~~~ 176 (325) T d1qe0a2 145 AMVMHIYQSFGLKHLKLVINSVGDMASRKEYN 176 (325) T ss_dssp HHHHHHHHHTTCCCEEEEEEECCCHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH T ss_conf 99999998627767423554544088888888 Done!