RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780817|ref|YP_003065230.1| preprotein translocase subunit
SecB [Candidatus Liberibacter asiaticus str. psy62]
         (152 letters)



>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet,
           chaperone; 2.35A {Escherichia coli} (A:)
          Length = 153

 Score =  144 bits (365), Expect = 4e-36
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           +   +  F I   Y KD SFE+PNAPH F   ++ QP +K+++   ++ ++   ++V+L 
Sbjct: 4   QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
             + A   ++  F  E+   GI  I       ++  L   CP +LFP+ R+ I++ +  G
Sbjct: 62  VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121

Query: 122 GFPPLVIDTIDFLKLFQQEK 141
            FP L +  ++F  LF    
Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141


>1fx3_A SECB, protein-export protein SECB; protein trasnport,
           translocation, transport protein; 2.50A {Haemophilus
           influenzae} (A:)
          Length = 169

 Score =  141 bits (357), Expect = 4e-35
 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 4/142 (2%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
            ++Q+    I   Y+KD SFE+PN PH F   Q  +P +  ++      +    ++V+L+
Sbjct: 11  TEEQQPVLQIQRIYVKDVSFEAPNLPHIF--QQEWKPKLGFDLSTETTQVGDDLYEVVLN 68

Query: 62  FDIEAK--NNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119
             +E    ++  V F  E+  +G+  I       ++  L  +CP +LFP+ R+++SN + 
Sbjct: 69  ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128

Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141
            G FP L +  ++F  LF +  
Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150


>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
          ligand-receptor complex, signaling protein/cytokine
          complex; HET: NAG; 2.80A {Homo sapiens} (B:101-201)
          Length = 101

 Score = 25.7 bits (56), Expect = 2.5
 Identities = 7/44 (15%), Positives = 11/44 (25%)

Query: 22 ESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIE 65
                HC    ++      + + V A    G      L  D  
Sbjct: 55 PKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPM 98


>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2,
           TLR1, lipopeptide, innate immunity, glycoprotein, immune
           response, inflammatory response, leucine-rich repeat,
           membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
           (B:1-484)
          Length = 484

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 9/47 (19%)

Query: 84  LRILDCPQEHISQILFVECPQLLFPFVRQII--SNTIRDGGFPPLVI 128
             ++D  +  +  +     P+ L      +    N I         I
Sbjct: 2   EFLVDRSKNGLIHV-----PKDLSQKTTILNISQNYIS--ELWTSDI 41


>1axi_B HGHBP, growth hormone receptor; complex (hormone/receptor);
           2.10A {Homo sapiens} (B:1-132)
          Length = 132

 Score = 25.4 bits (55), Expect = 3.7
 Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 28  HCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIE 65
            C+F+       I   +++ +N  +         F ++
Sbjct: 93  SCYFNSSFTSIAIPYCIKLTSNGGTVD----EKCFSVD 126


>2b1e_A Exocyst complex component EXO70; tethering complex,
           endocytosis/exocytosis complex; 2.00A {Saccharomyces
           cerevisiae} PDB: 2b7m_A 2pfv_A (A:289-458)
          Length = 170

 Score = 25.0 bits (54), Expect = 5.1
 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query: 109 FVRQIISNT---IRDGGFPPLVIDTIDFLKLF 137
            + +  ++      + G     +DT+  L+ F
Sbjct: 4   RIIKKANSISTIPSNNGVTEATVDTMSRLRKF 35


>2r47_A Uncharacterized protein MTH_862; unknown function,
           structural genomics, APC5901, PSI-2, protein structure
           initiative; 1.88A {Methanothermobacterthermautotrophicus
           str} (A:)
          Length = 157

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 81  SGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRD 120
              L +     +   +I F   P +  PF  Q+ +  +RD
Sbjct: 13  KEHLGVFREAVKDAERIGFAGVPGVXTPFA-QLFAYAVRD 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0325    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,117,297
Number of extensions: 47596
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 11
Length of query: 152
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 71
Effective length of database: 2,217,844
Effective search space: 157466924
Effective search space used: 157466924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)