BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780817|ref|YP_003065230.1| preprotein translocase subunit
SecB [Candidatus Liberibacter asiaticus str. psy62]
         (152 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 152

 Score =  306 bits (784), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/152 (100%), Positives = 152/152 (100%)

Query: 1   MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVIL 60
           MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVIL
Sbjct: 1   MEKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVIL 60

Query: 61  SFDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRD 120
           SFDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRD
Sbjct: 61  SFDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRD 120

Query: 121 GGFPPLVIDTIDFLKLFQQEKSLIKNKEGLMK 152
           GGFPPLVIDTIDFLKLFQQEKSLIKNKEGLMK
Sbjct: 121 GGFPPLVIDTIDFLKLFQQEKSLIKNKEGLMK 152


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 24.3 bits (51), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 125 PLVIDTIDFLKLFQQEKSLIK 145
           P+VID+ DF KL ++   +IK
Sbjct: 229 PIVIDSKDFSKLEEEMSQMIK 249


>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 21.6 bits (44), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 30  FFDIQNQQPTIKINVQVNANTISGADFDVIL 60
            F++      I+  V   AN I GA FD  L
Sbjct: 276 LFEVDEAATRIREEVDSEANIILGATFDEAL 306


>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 21.6 bits (44), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 14  QYIKDFSFESPNAPH 28
           Q  K+++ +SP APH
Sbjct: 86  QTFKEYNSDSPRAPH 100


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.142    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,165
Number of Sequences: 1233
Number of extensions: 3844
Number of successful extensions: 12
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 328,796
effective HSP length: 67
effective length of query: 85
effective length of database: 246,185
effective search space: 20925725
effective search space used: 20925725
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 34 (17.7 bits)