HHsearch alignment for GI: 254780818 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=97.82 E-value=7.1e-05 Score=50.43 Aligned_cols=132 Identities=20% Similarity=0.353 Sum_probs=83.4
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89998467888888888999999999999880313798985888228865724202101232248521002344777530
Q gi|254780818|r 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~ 88 (245)
T Consensus 24 ~~a~~~et~~l~~~~~~lvg~s~~-~~~-----~--~~yi-~~~----------~~---------~~~~~~~~~l~~~l~ 75 (593)
T COG0749 24 NIAFDTETDGLDPHGADLVGLSVA-SEE-----E--AAYI-PLL----------HG---------PEQLNVLAALKPLLE 75 (593)
T ss_pred CCCEECCCCCCCCCCCCEEEEEEE-CCC-----C--CEEE-EEC----------CC---------HHHHHHHHHHHHHHH
T ss_conf 310100014567555874678862-365-----4--2367-513----------66---------555514899999863
Q ss_pred CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHC-CCCCCC-----------
Q ss_conf 0232023102322431121000001122221000011000000017764-222378999718-754555-----------
Q gi|254780818|r 89 EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYG-ITISHR----------- 155 (245)
Q Consensus 89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~-i~~~~r----------- 155 (245)
T Consensus 76 ~~~~~kv~~~~K~d~~~l----~~~Gi~---~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~kg~~~~ 148 (593)
T COG0749 76 DEGIKKVGQNLKYDYKVL----ANLGIE---PGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAGKGKKQL 148 (593)
T ss_pred CCCCCHHCCCCCHHHHHH----HHCCCC---CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCC
T ss_conf 754103213413669999----973976---5651789999961486767577789999825877402487632544567
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHH
Q ss_conf ---------66640269999999999997
Q gi|254780818|r 156 ---------SKHGALLDSHLLSDVYIKMM 175 (245)
Q Consensus 156 ---------~~H~Al~Da~~~a~v~~~ll 175 (245)
T Consensus 149 ~~~~~~~~~~~~y~a~~a~~~~~L~~~l~ 177 (593)
T COG0749 149 TFADVKLEKATEYAAEDADATLRLESILE 177 (593)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61001477888878888899999999999