HHsearch alignment for GI: 254780818 and conserved domain: COG1949

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification].
Probab=98.65  E-value=2.3e-08  Score=72.21  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=88.2

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEEEC-CEECCCEEEEEEC-CC--CCCCCHHHEEECC---CCCCCCCCCCCCC
Q ss_conf             77758999846788888888899999999999-9880313798985-88--8228865724202---1012322485210
Q gi|254780818|r    5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLC-PN--GRKNSPEALKLHG---ITDEFLKDKPSFS   77 (245)
Q Consensus         5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~-~~~~~~~f~~~i~-P~--~~~i~~~~~~ihG---It~~~l~~~p~f~   77 (245)
T Consensus         4 ~~~nLiWIDlEMTGLd~~~drIIEiA~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t~~   83 (184)
T COG1949           4 NKNNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVTEA   83 (184)
T ss_pred             CCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH
T ss_conf             77862899632026886764278888877547632103585578867999999889999971454318999997223399


Q ss_pred             HHHHHHHHHHH----CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCH---HCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             02344777530----023202310232243112100000112222100001100---00000177642223789997187
Q gi|254780818|r   78 SIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL---SIARRKHPSSRNDLNSLCKRYGI  150 (245)
Q Consensus        78 ev~~~f~~fi~----~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl---~lar~~~p~~~~~L~~l~~~~~i  150 (245)
T Consensus        84 ~aE~~~L~flkkwvp~~~spicGNSI~qDRrFl~r~MP~Le~-yf-HYR~lDVSTlKELa~RW~P~-------i--~~~-  151 (184)
T COG1949          84 EAEAQTLDFLKKWVPKGVSPICGNSIAQDRRFLFRYMPKLEA-YF-HYRYLDVSTLKELARRWNPE-------I--LAG-  151 (184)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHCCH-------H--HHH-
T ss_conf             999999999998678998877565065789999997655898-74-46662078799999862937-------7--652-


Q ss_pred             CCCCCCCCCCHHHHH-HHHH
Q ss_conf             545556664026999-9999
Q gi|254780818|r  151 TISHRSKHGALLDSH-LLSD  169 (245)
Q Consensus       151 ~~~~r~~H~Al~Da~-~~a~  169 (245)
T Consensus       152 -~~K~~~H~Al~DI~ESI~E  170 (184)
T COG1949         152 -FKKGGTHRALDDIRESIAE  170 (184)
T ss_pred             -HCCCCCHHHHHHHHHHHHH
T ss_conf             -1036523469999999999