HHsearch alignment for GI: 254780818 and conserved domain: COG1949
>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification].
Probab=98.65 E-value=2.3e-08 Score=72.21 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=88.2
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEEEC-CEECCCEEEEEEC-CC--CCCCCHHHEEECC---CCCCCCCCCCCCC
Q ss_conf 77758999846788888888899999999999-9880313798985-88--8228865724202---1012322485210
Q gi|254780818|r 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLC-PN--GRKNSPEALKLHG---ITDEFLKDKPSFS 77 (245)
Q Consensus 5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~-~~~~~~~f~~~i~-P~--~~~i~~~~~~ihG---It~~~l~~~p~f~ 77 (245)
T Consensus 4 ~~~nLiWIDlEMTGLd~~~drIIEiA~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t~~ 83 (184)
T COG1949 4 NKNNLIWIDLEMTGLDPERDRIIEIATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVTEA 83 (184)
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHH
T ss_conf 77862899632026886764278888877547632103585578867999999889999971454318999997223399
Q ss_pred HHHHHHHHHHH----CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCH---HCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 02344777530----023202310232243112100000112222100001100---00000177642223789997187
Q gi|254780818|r 78 SIFSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTL---SIARRKHPSSRNDLNSLCKRYGI 150 (245)
Q Consensus 78 ev~~~f~~fi~----~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl---~lar~~~p~~~~~L~~l~~~~~i 150 (245)
T Consensus 84 ~aE~~~L~flkkwvp~~~spicGNSI~qDRrFl~r~MP~Le~-yf-HYR~lDVSTlKELa~RW~P~-------i--~~~- 151 (184)
T COG1949 84 EAEAQTLDFLKKWVPKGVSPICGNSIAQDRRFLFRYMPKLEA-YF-HYRYLDVSTLKELARRWNPE-------I--LAG- 151 (184)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHCCH-------H--HHH-
T ss_conf 999999999998678998877565065789999997655898-74-46662078799999862937-------7--652-
Q ss_pred CCCCCCCCCCHHHHH-HHHH
Q ss_conf 545556664026999-9999
Q gi|254780818|r 151 TISHRSKHGALLDSH-LLSD 169 (245)
Q Consensus 151 ~~~~r~~H~Al~Da~-~~a~ 169 (245)
T Consensus 152 -~~K~~~H~Al~DI~ESI~E 170 (184)
T COG1949 152 -FKKGGTHRALDDIRESIAE 170 (184)
T ss_pred -HCCCCCHHHHHHHHHHHHH
T ss_conf -1036523469999999999