HHsearch alignment for GI: 254780818 and conserved domain: COG3359

>COG3359 Predicted exonuclease [DNA replication, recombination, and repair].
Probab=98.65  E-value=1.5e-07  Score=67.21  Aligned_cols=136  Identities=22%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r    8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF   87 (245)
Q Consensus         8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi   87 (245)
T Consensus        99 ~~~FFDiETTGL~~ag~~I~~~g~a~~~~~~-----~--~Vrq~~lp~p~~E-----------------~avle~fl~~~  154 (278)
T COG3359          99 DVAFFDIETTGLDRAGNTITLVGGARGVDDT-----M--HVRQHFLPAPEEE-----------------VAVLENFLHDP  154 (278)
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEECCCCE-----E--EEEEECCCCCCHH-----------------HHHHHHHHCCC
T ss_conf             2589963314668889859999888735756-----9--9975127984135-----------------68999975389


Q ss_pred             HCCCCEEEEECC-CCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC--CCCCHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf             002320231023-2243112100000112222100001100000001776--4222378999718754555666402699
Q gi|254780818|r   88 NEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDS  164 (245)
Q Consensus        88 ~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~--~~~~L~~l~~~~~i~~~~r~~H~Al~Da  164 (245)
T Consensus       155 --~~~~lvsfNGkaFD~PfikR-~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr~LGi~R~e---dtdG~~~  228 (278)
T COG3359         155 --DFNMLVSFNGKAFDIPFIKR-MVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVERILGIRREE---DTDGYDG  228 (278)
T ss_pred             --CCCEEEEECCCCCCCHHHHH-HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC---CCCCCCH
T ss_conf             --84559974683267089999-87516444766663122103445312028788813678885755011---5898501


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780818|r  165 HLLSDVYIK  173 (245)
Q Consensus       165 ~~~a~v~~~  173 (245)
T Consensus       229 p~lyr~~~~  237 (278)
T COG3359         229 PELYRLYRR  237 (278)
T ss_pred             HHHHHHHHH
T ss_conf             999999987