HHsearch alignment for GI: 254780818 and conserved domain: COG3359
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair].
Probab=98.65 E-value=1.5e-07 Score=67.21 Aligned_cols=136 Identities=22% Similarity=0.250 Sum_probs=85.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 99 ~~~FFDiETTGL~~ag~~I~~~g~a~~~~~~-----~--~Vrq~~lp~p~~E-----------------~avle~fl~~~ 154 (278)
T COG3359 99 DVAFFDIETTGLDRAGNTITLVGGARGVDDT-----M--HVRQHFLPAPEEE-----------------VAVLENFLHDP 154 (278)
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEECCCCE-----E--EEEEECCCCCCHH-----------------HHHHHHHHCCC
T ss_conf 2589963314668889859999888735756-----9--9975127984135-----------------68999975389
Q ss_pred HCCCCEEEEECC-CCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC--CCCCHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 002320231023-2243112100000112222100001100000001776--4222378999718754555666402699
Q gi|254780818|r 88 NEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS--SRNDLNSLCKRYGITISHRSKHGALLDS 164 (245)
Q Consensus 88 ~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~--~~~~L~~l~~~~~i~~~~r~~H~Al~Da 164 (245)
T Consensus 155 --~~~~lvsfNGkaFD~PfikR-~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr~LGi~R~e---dtdG~~~ 228 (278)
T COG3359 155 --DFNMLVSFNGKAFDIPFIKR-MVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVERILGIRREE---DTDGYDG 228 (278)
T ss_pred --CCCEEEEECCCCCCCHHHHH-HHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC---CCCCCCH
T ss_conf --84559974683267089999-87516444766663122103445312028788813678885755011---5898501
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780818|r 165 HLLSDVYIK 173 (245)
Q Consensus 165 ~~~a~v~~~ 173 (245)
T Consensus 229 p~lyr~~~~ 237 (278)
T COG3359 229 PELYRLYRR 237 (278)
T ss_pred HHHHHHHHH
T ss_conf 999999987