HHsearch alignment for GI: 254780818 and conserved domain: PRK00448
>PRK00448 polC DNA polymerase III PolC; Validated.
Probab=100.00 E-value=0 Score=314.74 Aligned_cols=169 Identities=35% Similarity=0.599 Sum_probs=155.2
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 419 ~yVvFDiETTGls~~~d~IiEigAvki~~g~ii-d~f~~fi~P~-~~i~~~i~~lT~Itd~mv~~~~~~~evl~~f~~f~ 496 (1436)
T PRK00448 419 TYVVFDVETTGLSAVYDEIIEIGAVKIKNGEII-DKFEEFIKPG-HPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFC 496 (1436)
T ss_pred CEEEEEECCCCCCCCCCCEEEEEEEEEECCEEE-EEEHHHCCCC-CCCCHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 379986006888866672368757986378175-4102103899-97975453214788478638987899999999982
Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 0023202310232243112100000112222100001100000001776-422237899971875455566640269999
Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHL 166 (245)
Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~ 166 (245)
T Consensus 497 ~--d~vlVAHNa~FD~~Fi~~~~~~~~~~~~-~~p~iDTl~lsr~l~p~~k~~~L~~l~k~~~v~~~~--hHRA~~Da~~ 571 (1436)
T PRK00448 497 G--DSVLVAHNASFDVGFINTNYEKLGLEKI-KNPVIDTLELSRFLYPEYKSHRLNTLAKKFGVELEH--HHRADYDAEA 571 (1436)
T ss_pred C--CCEEEEECCCCCHHHHHHHHHHCCCCCC-CCCEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC--CCCCCCCHHH
T ss_conf 8--9779984586568899999998089866-797230299898755101114478899884888654--5443223888
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999999730576666
Q gi|254780818|r 167 LSDVYIKMMVGGSQINF 183 (245)
Q Consensus 167 ~a~v~~~ll~g~~q~~l 183 (245)
T Consensus 572 t~~i~~~~l~~~~~~~i 588 (1436)
T PRK00448 572 TAYLLIKFLKDLKEKGI 588 (1436)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999987487