HHsearch alignment for GI: 254780818 and conserved domain: PRK05711
>PRK05711 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=0 Score=474.55 Aligned_cols=233 Identities=44% Similarity=0.772 Sum_probs=201.7
Q ss_pred CCCCCEEEEECCCCCCCCCC-CEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 67775899984678888888-88999999999999880313798985888228865724202101232248521002344
Q gi|254780818|r 4 KNKMRKIVFDIETTGLDSKN-DRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 (245)
Q Consensus 4 ~~~mr~iv~D~ETTGl~~~~-d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~ 82 (245)
T Consensus 1 ~~~MR~VvlDtETTGl~~~~gdRIIEIgav~~~~~~~t~~~f~~~inP~-r~i~~~a~~IhGIT~e~L~~~P~F~ei~~e 79 (240)
T PRK05711 1 TAIMRQIVLDTETTGLNQREGHRIIEIGAVELINRRLTGRNFHVYIKPD-RDVDPEALAVHGITDEFLADKPTFAEVADE 79 (240)
T ss_pred CCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCC-CCCCHHHHHHCCCCHHHHCCCCCHHHHHHH
T ss_conf 9766289998668996999998789999999999988143578998968-959977875408688996458759999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCC---CCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 777530023202310232243112100000112222---10000110000000177642223789997187545556664
Q gi|254780818|r 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPL---DPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG 159 (245)
Q Consensus 83 f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~---~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~ 159 (245)
T Consensus 80 fl~Fi~--~s~lVaHNa~FD~~FLn~El~r~g~~~~~~~~~~~viDTL~lAR~~~Pg~~~sLdaLc~r~~I~~s~R~~Hg 157 (240)
T PRK05711 80 FLDFIR--GAELIIHNAPFDIGFMDYEFALLGRDIPKTTTFCKVTDTLAMARRMFPGKRNSLDALCKRYGIDNSHRTLHG 157 (240)
T ss_pred HHHHHC--CCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 999818--997999661998999999999868998764452121019999998789998899999998098988756576
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---CHH
Q ss_conf 02699999999999973057666654443211110111222344321123563457899999999999987087---811
Q gi|254780818|r 160 ALLDSHLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTLGK---NAI 236 (245)
Q Consensus 160 Al~Da~~~a~v~~~ll~g~~q~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~H~~~l~~l~k---~~l 236 (245)
T Consensus 158 AL~Da~llA~Vyl~l~gG--Q~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~eE~~~H~~~l~~i~k~~~~~i 234 (240)
T PRK05711 158 ALLDAEILAEVYLAMTGG--QTSLGFAMEGETQQQQGEATIQRI-VRQASRLPVVRATDEELAAHEARLDLLDKKGGSCL 234 (240)
T ss_pred HHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 488899999999997178--756655755432112454433434-45556777488999999999999999985589864
Q ss_pred HHHHCC
Q ss_conf 456305
Q gi|254780818|r 237 WDRYIS 242 (245)
Q Consensus 237 W~k~~~ 242 (245)
T Consensus 235 W~k~~~ 240 (240)
T PRK05711 235 WRKPLE 240 (240)
T ss_pred CCCCCC
T ss_conf 267079