HHsearch alignment for GI: 254780818 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=97.91 E-value=3.4e-05 Score=52.47 Aligned_cols=145 Identities=18% Similarity=0.282 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245)
Q Consensus 6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245)
T Consensus 154 ~lrvlSfDIEc~----~~g~ii~I~l~~-~~~~---~v~~--~g~---~~~----------~~~v~~~~~E~eLL~~F~~ 210 (785)
T PRK05762 154 PLKVVSLDIETS----NKGELYSIGLEG-CGQR---QVYM--LGE---ANG----------DAELEYVADEKALLERFNA 210 (785)
T ss_pred CCEEEEEEEEEC----CCCCEEEEEECC-CCCC---EEEE--ECC---CCC----------CCEEEEECCHHHHHHHHHH
T ss_conf 886999998977----999889999517-9984---6899--668---899----------8538990999999999999
Q ss_pred HHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------CCCCHHCCCHHCCCCC-CCCCC
Q ss_conf 530023-20231023-224311210000011222------------------------2100001100000001-77642
Q gi|254780818|r 86 FFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------LDPSRIIDTLSIARRK-HPSSR 138 (245)
Q Consensus 86 fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------~~~~~~iDTl~lar~~-~p~~~ 138 (245)
T Consensus 211 ~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~s 290 (785)
T PRK05762 211 WFAEFDPDVIIGWNVVQFDLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKS 290 (785)
T ss_pred HHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCC
T ss_conf 99985999899627478777999999999499854687888653331565566059998428999709999875203676
Q ss_pred CCHHHHHHHH-CC----CCC-CC--------------CCCCCHHHHHHHHHHHHH
Q ss_conf 2237899971-87----545-55--------------666402699999999999
Q gi|254780818|r 139 NDLNSLCKRY-GI----TIS-HR--------------SKHGALLDSHLLSDVYIK 173 (245)
Q Consensus 139 ~~L~~l~~~~-~i----~~~-~r--------------~~H~Al~Da~~~a~v~~~ 173 (245)
T Consensus 291 YsL~~Va~~~Lge~K~~~~~~~r~~eI~~~~~~~r~~l~~Y~l~Da~L~~~L~~k 345 (785)
T PRK05762 291 FSLENVAQELLGEGKAIDNPYDRMDEIDRYFADDKPALAKYNLKDCELVTRIFEK 345 (785)
T ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6299999998544555566666688889988546899999999999999999998