HHsearch alignment for GI: 254780818 and conserved domain: PRK06063
>PRK06063 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=5.6e-45 Score=301.19 Aligned_cols=171 Identities=23% Similarity=0.397 Sum_probs=149.4
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
T Consensus 15 ~~fvvvD~ETTGl~p~~drIieig~v~~~~~g~i~~~~~tlvnP~-~--dp~~~~IhGIt~~~v~~aP~f~ev~~~l~~~ 91 (313)
T PRK06063 15 QGWAVVDVETSGFRPGQARIISVAVLGLDADGNVEQSVVSLLNPG-V--DPGPTHVHGLTAAMLEGQPQFADIAGELAEV 91 (313)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCC-C--CCCCEEEECCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 997999976899999897069999999989978889999975919-9--9898434187999981799899999999999
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 300232023102322431121000001122221000011000000017764-2223789997187545556664026999
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSH 165 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~Al~Da~ 165 (245)
T Consensus 92 l~--g~vlVAHNa~FD~~FL~~e~~r~g~~~p-~~~~lcTl~lARr~~~~l~~~kL~tla~~~Gi~~~~--~H~Al~DAr 166 (313)
T PRK06063 92 LR--GRTLVAHNVAFDYSFLAAEAELAGAELP-VDQVMCTVELARRLDLGLPNLRLETLAAHWGVVQQR--PHDALDDAR 166 (313)
T ss_pred HC--CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCCC--CCCCHHHHH
T ss_conf 78--9979996856529999999997399889-996676899886544899997478899980999887--655067789
Q ss_pred HHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999973057666654
Q gi|254780818|r 166 LLSDVYIKMMVGGSQINFGF 185 (245)
Q Consensus 166 ~~a~v~~~ll~g~~q~~l~l 185 (245)
T Consensus 167 a~a~il~~~l~~a~~~~~~l 186 (313)
T PRK06063 167 VLAGILAPALERARERDVWL 186 (313)
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 99999899998600246656