HHsearch alignment for GI: 254780818 and conserved domain: PRK06195

>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=100.00  E-value=0  Score=308.11  Aligned_cols=164  Identities=24%  Similarity=0.354  Sum_probs=147.7

Q ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r    7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF   86 (245)
Q Consensus         7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f   86 (245)
T Consensus         1 m~fvviD~ETt~--~~~d~iieIg~v~v~~g~iv-~~~~~Li~P~~~~~~p~~i~ihGIt~~~v~~aP~f~ev~~~~~~f   77 (309)
T PRK06195          1 MDFVAIDFETAN--EKRNSPCSIGIVVVKDGEIV-EKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWEKIKDY   77 (309)
T ss_pred             CCEEEEEEECCC--CCCCEEEEEEEEEEECCEEE-EEEEEEECCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             929999978999--99980599999999999999-999999899998888744640377999996599999999999998


Q ss_pred             HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf             300232023102322431121000001122221000011000000017764-2223789997187545556664026999
Q gi|254780818|r   87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSH  165 (245)
Q Consensus        87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~Al~Da~  165 (245)
T Consensus        78 i~--~~vlVaHNa~FD~~fL~~~~~r~gl~~~-~~~~~cTl~LAR~~~p~l~~~kL~~La~~~gi~~~---hH~Al~DA~  151 (309)
T PRK06195         78 FN--DNLVIAHNASFDISVLRKTLELYNIPMP-DFEYICTMKLAKNFYSNIPNARLNTVNNFLGYEFK---HHDALEDAM  151 (309)
T ss_pred             HC--CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCC---CCCCCCCHH
T ss_conf             57--9979995628889999999998499999-99777479999986557765788899998598801---168510199


Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999973057
Q gi|254780818|r  166 LLSDVYIKMMVGGS  179 (245)
Q Consensus       166 ~~a~v~~~ll~g~~  179 (245)
T Consensus       152 A~a~I~~~~~~~~~  165 (309)
T PRK06195        152 ACSNILLNISKELN  165 (309)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999818