HHsearch alignment for GI: 254780818 and conserved domain: PRK06310
>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=0 Score=330.58 Aligned_cols=207 Identities=28% Similarity=0.418 Sum_probs=170.5
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245)
Q Consensus 6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245)
T Consensus 6 ~~~yvv~D~ETTGl~~~~DrIIEI~~vkv~~~~i~-~~~~~linP~-~~I~~~~~~ihGIt~emV~d~P~f~ev~~~~~~ 83 (250)
T PRK06310 6 DTEFVCLDCETTGLDVKKDRIIEFAAIRFTFDEVI-DSMEFLINPE-RVVSAESQRIHHISDAMLRDKPKIAEVFPQIKG 83 (250)
T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC-CCCCHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 89889997337997999962799999999999886-8899998928-979988987615489998469999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 5300232023102322431121000001122221-000011000000017764222378999718754555666402699
Q gi|254780818|r 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164 (245)
Q Consensus 86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da 164 (245)
T Consensus 84 fi~~-~~ilVaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~~~~~~~L~~L~~~~~i~~~~--aHrAl~Da 160 (250)
T PRK06310 84 FFKE-GDYIVGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDG--NHRAMKDV 160 (250)
T ss_pred HHCC-CCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHCCCCCCC--CCCHHHHH
T ss_conf 9679-99999938455799999999976998665679578499999756765456099999970999986--66819999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999997305766665444321111011122234432112356345789999999
Q gi|254780818|r 165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE 223 (245)
Q Consensus 165 ~~~a~v~~~ll~g~~q~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 223 (245)
T Consensus 161 ~aTa~vf~~l~~r~~~--~----e~~~~i~~~p~~~~~f~FGKhKGk~v~ev~~~Y~~W 213 (250)
T PRK06310 161 EININVFKHLCKRFRT--L----EQLKQVLSKPIKMKYMPLGKHKGRLFSEIPLEYLQW 213 (250)
T ss_pred HHHHHHHHHHHHHCCC--H----HHHHHHHCCCCCCCEECCCCCCCEEHHHHHHHHHHH
T ss_conf 9999999999985537--9----999998619463420057784988899817999999