HHsearch alignment for GI: 254780818 and conserved domain: PRK06310

>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=100.00  E-value=0  Score=330.58  Aligned_cols=207  Identities=28%  Similarity=0.418  Sum_probs=170.5

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r    6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD   85 (245)
Q Consensus         6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~   85 (245)
T Consensus         6 ~~~yvv~D~ETTGl~~~~DrIIEI~~vkv~~~~i~-~~~~~linP~-~~I~~~~~~ihGIt~emV~d~P~f~ev~~~~~~   83 (250)
T PRK06310          6 DTEFVCLDCETTGLDVKKDRIIEFAAIRFTFDEVI-DSMEFLINPE-RVVSAESQRIHHISDAMLRDKPKIAEVFPQIKG   83 (250)
T ss_pred             CCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC-CCCCHHHHHHHCCCHHHHHCCCCHHHHHHHHHH
T ss_conf             89889997337997999962799999999999886-8899998928-979988987615489998469999999999999


Q ss_pred             HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf             5300232023102322431121000001122221-000011000000017764222378999718754555666402699
Q gi|254780818|r   86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS  164 (245)
Q Consensus        86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da  164 (245)
T Consensus        84 fi~~-~~ilVaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~~~~~~~L~~L~~~~~i~~~~--aHrAl~Da  160 (250)
T PRK06310         84 FFKE-GDYIVGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYGDSPNNSLEALAVHFNVPYDG--NHRAMKDV  160 (250)
T ss_pred             HHCC-CCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCCCCCCCHHHHHHHHCCCCCCC--CCCHHHHH
T ss_conf             9679-99999938455799999999976998665679578499999756765456099999970999986--66819999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             99999999997305766665444321111011122234432112356345789999999
Q gi|254780818|r  165 HLLSDVYIKMMVGGSQINFGFKTNEDRFFKEEKKTVPNISLLKRDKPLFTRITKEELDE  223 (245)
Q Consensus       165 ~~~a~v~~~ll~g~~q~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  223 (245)
T Consensus       161 ~aTa~vf~~l~~r~~~--~----e~~~~i~~~p~~~~~f~FGKhKGk~v~ev~~~Y~~W  213 (250)
T PRK06310        161 EININVFKHLCKRFRT--L----EQLKQVLSKPIKMKYMPLGKHKGRLFSEIPLEYLQW  213 (250)
T ss_pred             HHHHHHHHHHHHHCCC--H----HHHHHHHCCCCCCCEECCCCCCCEEHHHHHHHHHHH
T ss_conf             9999999999985537--9----999998619463420057784988899817999999