HHsearch alignment for GI: 254780818 and conserved domain: PRK06807
>PRK06807 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=0 Score=342.18 Aligned_cols=166 Identities=27% Similarity=0.446 Sum_probs=153.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 67775899984678888888889999999999998803137989858882288657242021012322485210023447
Q gi|254780818|r 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 (245)
Q Consensus 4 ~~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f 83 (245)
T Consensus 5 ~lp~~fVV~DiETTGl~p~~D~IIEIgAVkv~ng~Iv-d~f~tLInP~-~~Ip~~It~ItGIT~emV~dAP~f~EVl~~f 82 (313)
T PRK06807 5 SLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELV-DQFVSYVNPE-RPIPDRITSLTGITNYRVSDAPTIEEVLPLF 82 (313)
T ss_pred CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC-CCCCHHHHHHCCCCHHHHHCCCCHHHHHHHH
T ss_conf 8998789999788997999987899999999999798-9999998948-9799667653397999982699899999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 775300232023102322431121000001122221000011000000017764-2223789997187545556664026
Q gi|254780818|r 84 WDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALL 162 (245)
Q Consensus 84 ~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~Al~ 162 (245)
T Consensus 83 ~~Fi~--d~iLVAHNA~FD~~FL~~~L~r~gl~~~-~n~~IDTL~LAR~l~P~L~NhKLnTVa~~LgI~l~---HHrAld 156 (313)
T PRK06807 83 LAFLH--TNVIVAHNASFDMRFLKSNVNMLGLPEP-KNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLS---SHNAFD 156 (313)
T ss_pred HHHCC--CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCC---CCCCHH
T ss_conf 98738--9989995536619999999997499888-99877659999986478765667899998399834---367177
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999730
Q gi|254780818|r 163 DSHLLSDVYIKMMVG 177 (245)
Q Consensus 163 Da~~~a~v~~~ll~g 177 (245)
T Consensus 157 DA~acAeI~~k~~~~ 171 (313)
T PRK06807 157 DCITCAAVYQKCASI 171 (313)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999999999998