HHsearch alignment for GI: 254780818 and conserved domain: PRK07942
>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=2.8e-45 Score=303.28 Aligned_cols=171 Identities=23% Similarity=0.339 Sum_probs=148.1
Q ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCC-----CCCCCH
Q ss_conf 677758999846788888888899999999999988031379898588822886572420210123224-----852100
Q gi|254780818|r 4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD-----KPSFSS 78 (245)
Q Consensus 4 ~~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~-----~p~f~e 78 (245)
T Consensus 3 w~~~~lvvfD~ETTG~d~~~dRIIeia~V~~~~~g~~~~~~~~LvnP-g~~IP~~a~~vhGIT~e~~~~~G~p~a~v~~e 81 (234)
T PRK07942 3 WHDGPLAAFDLETTGVDPETARIVTAAIVVVDAHGEVVERREWLADP-GVEIPEEASAVHGITTERARAHGRPAAEVLAE 81 (234)
T ss_pred CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECC-CCCCCHHHHHHHCCCHHHHHHCCCCCHHHHHH
T ss_conf 75697899980169989889838999999998898546889998695-89499889778488999997428983079999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC--CCCCCHHHHHHHHCCCCCCCC
Q ss_conf 234477753002320231023224311210000011222210000110000000177--642223789997187545556
Q gi|254780818|r 79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRS 156 (245)
Q Consensus 79 v~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p--~~~~~L~~l~~~~~i~~~~r~ 156 (245)
T Consensus 82 ia~~l~~~~~-~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~ygv~l~~-- 158 (234)
T PRK07942 82 IAEALRAVWR-AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHYGVRLDN-- 158 (234)
T ss_pred HHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC--
T ss_conf 9999999972-7987999670764999999999859996777755619998877514777888899999984998877--
Q ss_pred CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 6640269999999999997305
Q gi|254780818|r 157 KHGALLDSHLLSDVYIKMMVGG 178 (245)
Q Consensus 157 ~H~Al~Da~~~a~v~~~ll~g~ 178 (245)
T Consensus 159 aH~A~aDA~Ata~l~~~l~~r~ 180 (234)
T PRK07942 159 AHDATADALAAARLAWALARRF 180 (234)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5564152899999999999876