HHsearch alignment for GI: 254780818 and conserved domain: PRK07942

>PRK07942 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00  E-value=2.8e-45  Score=303.28  Aligned_cols=171  Identities=23%  Similarity=0.339  Sum_probs=148.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCC-----CCCCCH
Q ss_conf             677758999846788888888899999999999988031379898588822886572420210123224-----852100
Q gi|254780818|r    4 KNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKD-----KPSFSS   78 (245)
Q Consensus         4 ~~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~-----~p~f~e   78 (245)
T Consensus         3 w~~~~lvvfD~ETTG~d~~~dRIIeia~V~~~~~g~~~~~~~~LvnP-g~~IP~~a~~vhGIT~e~~~~~G~p~a~v~~e   81 (234)
T PRK07942          3 WHDGPLAAFDLETTGVDPETARIVTAAIVVVDAHGEVVERREWLADP-GVEIPEEASAVHGITTERARAHGRPAAEVLAE   81 (234)
T ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEECC-CCCCCHHHHHHHCCCHHHHHHCCCCCHHHHHH
T ss_conf             75697899980169989889838999999998898546889998695-89499889778488999997428983079999


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC--CCCCCHHHHHHHHCCCCCCCC
Q ss_conf             234477753002320231023224311210000011222210000110000000177--642223789997187545556
Q gi|254780818|r   79 IFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP--SSRNDLNSLCKRYGITISHRS  156 (245)
Q Consensus        79 v~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p--~~~~~L~~l~~~~~i~~~~r~  156 (245)
T Consensus        82 ia~~l~~~~~-~g~~lVahNA~FDl~fL~~El~R~g~~~l~~~~viDtl~l~r~l~~~r~gkr~L~aL~~~ygv~l~~--  158 (234)
T PRK07942         82 IAEALRAVWR-AGVPVVVYNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKHVDRYRKGKRTLTALCEHYGVRLDN--  158 (234)
T ss_pred             HHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCC--
T ss_conf             9999999972-7987999670764999999999859996777755619998877514777888899999984998877--


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             6640269999999999997305
Q gi|254780818|r  157 KHGALLDSHLLSDVYIKMMVGG  178 (245)
Q Consensus       157 ~H~Al~Da~~~a~v~~~ll~g~  178 (245)
T Consensus       159 aH~A~aDA~Ata~l~~~l~~r~  180 (234)
T PRK07942        159 AHDATADALAAARLAWALARRF  180 (234)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             5564152899999999999876