HHsearch alignment for GI: 254780818 and conserved domain: PRK08517

>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00  E-value=0  Score=334.98  Aligned_cols=163  Identities=30%  Similarity=0.442  Sum_probs=151.7

Q ss_pred             CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r    7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF   86 (245)
Q Consensus         7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f   86 (245)
T Consensus        70 ~~fvvvDlETTGl~~~~d~IIEIgavkv~~g~ii-d~f~tlVnp~--~Ip~~It~lTGIt~emv~~aP~~~evl~~f~~F  146 (259)
T PRK08517         70 QVFCFVDIETNGSKPKKGQIIEIGAVKVKGGEII-DRFESFVKAK--EVPEYITELTGITYEDLENAPSLKEVLEDFRLF  146 (259)
T ss_pred             CCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC--CCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             8389999658998999982499999999999999-9874323989--899888221389989982799889999999999


Q ss_pred             HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             30023202310232243112100000112222100001100000001776422237899971875455566640269999
Q gi|254780818|r   87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL  166 (245)
Q Consensus        87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~  166 (245)
T Consensus       147 i~--d~ilVaHNa~FD~~FL~~~l~r~g~~~l-~n~~lDTl~LAR~~~p~~~ykL~~La~~~~I~~~~--~HRAl~DA~a  221 (259)
T PRK08517        147 LG--DSVFVAHNVNFDYNFISRSLEEIGLGPL-LNRKLCTIDLAKRTIESPRYGLSFLKELLGIETEV--HHRAYADALA  221 (259)
T ss_pred             HC--CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCEEEEHHHHHHHCCCCCCCHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf             68--8959993727609999999998399976-89856608999987587787889999975989999--9784588999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999730
Q gi|254780818|r  167 LSDVYIKMMVG  177 (245)
Q Consensus       167 ~a~v~~~ll~g  177 (245)
T Consensus       222 TaevF~~~L~~  232 (259)
T PRK08517        222 AYEIFEICLLN  232 (259)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999985