HHsearch alignment for GI: 254780818 and conserved domain: PRK08517
>PRK08517 DNA polymerase III subunit epsilon; Provisional.
Probab=100.00 E-value=0 Score=334.98 Aligned_cols=163 Identities=30% Similarity=0.442 Sum_probs=151.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
T Consensus 70 ~~fvvvDlETTGl~~~~d~IIEIgavkv~~g~ii-d~f~tlVnp~--~Ip~~It~lTGIt~emv~~aP~~~evl~~f~~F 146 (259)
T PRK08517 70 QVFCFVDIETNGSKPKKGQIIEIGAVKVKGGEII-DRFESFVKAK--EVPEYITELTGITYEDLENAPSLKEVLEDFRLF 146 (259)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC--CCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf 8389999658998999982499999999999999-9874323989--899888221389989982799889999999999
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 30023202310232243112100000112222100001100000001776422237899971875455566640269999
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~ 166 (245)
T Consensus 147 i~--d~ilVaHNa~FD~~FL~~~l~r~g~~~l-~n~~lDTl~LAR~~~p~~~ykL~~La~~~~I~~~~--~HRAl~DA~a 221 (259)
T PRK08517 147 LG--DSVFVAHNVNFDYNFISRSLEEIGLGPL-LNRKLCTIDLAKRTIESPRYGLSFLKELLGIETEV--HHRAYADALA 221 (259)
T ss_pred HC--CCEEEEECCHHHHHHHHHHHHHCCCCCC-CCCEEEEHHHHHHHCCCCCCCHHHHHHHCCCCCCC--CCCCHHHHHH
T ss_conf 68--8959993727609999999998399976-89856608999987587787889999975989999--9784588999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999730
Q gi|254780818|r 167 LSDVYIKMMVG 177 (245)
Q Consensus 167 ~a~v~~~ll~g 177 (245)
T Consensus 222 TaevF~~~L~~ 232 (259)
T PRK08517 222 AYEIFEICLLN 232 (259)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999985