HHsearch alignment for GI: 254780818 and conserved domain: PRK09146
>PRK09146 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=1.2e-42 Score=286.48 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=143.1
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECC-EECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 7589998467888888888999999999999-880313798985888228865724202101232248521002344777
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~-~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245)
T Consensus 47 ~~fvalD~ETTGLdp~~D~IiSIGaV~i~~~~I~l~~a~~~lV~p~-~~i~~~s~~IHGIt~~~l~~ap~l~evl~~ll~ 125 (239)
T PRK09146 47 VPFVALDFETTGLDPEQDAIVSIGLVPFTLQRIRCRQARHWVVKPR-RPLNEESVVIHGITHSDLQDAPDLERILDELLE 125 (239)
T ss_pred CCEEEEECCCCCCCCCCCCEEEEEEEEEECCEEEECCEEEEEECCC-CCCCCCCEEECCCCHHHHHCCCCHHHHHHHHHH
T ss_conf 8789996415788878885489989998788886534158998899-978764511069698998569999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC-----------C---CCCCHHHHHHHHCCC
Q ss_conf 53002320231023224311210000011222210000110000000177-----------6---422237899971875
Q gi|254780818|r 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP-----------S---SRNDLNSLCKRYGIT 151 (245)
Q Consensus 86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p-----------~---~~~~L~~l~~~~~i~ 151 (245)
T Consensus 126 ~l~--g~VLVaH~a~~D~~FL~~a~~~~~g~~l-~~P~IDTl~Le~~~~~~~~~~~~~r~~~~~~~slrL~~~r~rYgLP 202 (239)
T PRK09146 126 ALA--GKVVVVHYRRIERDFLDQALRNRIGEGI-EFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRLADSRLRYGLP 202 (239)
T ss_pred HHC--CCEEEEECCHHHHHHHHHHHHHHHCCCC-CCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 818--9989996839999999999999628898-8746448999999988542004443135898676389999981989
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4555666402699999999999973
Q gi|254780818|r 152 ISHRSKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 152 ~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245)
T Consensus 203 ~y~--aH~AL~DAlATAELflAQi~ 225 (239)
T PRK09146 203 AYP--PHHALTDAIATAELLQAQIA 225 (239)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHH
T ss_conf 888--76719999999999999999