HHsearch alignment for GI: 254780818 and conserved domain: PRK11779
>PRK11779 sbcB exonuclease I; Provisional.
Probab=99.84 E-value=1.6e-20 Score=148.20 Aligned_cols=170 Identities=20% Similarity=0.186 Sum_probs=118.9
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECC-EECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCC-CCCCC
Q ss_conf 9866777589998467888888888999999999999-88031379898588-822886572420210123224-85210
Q gi|254780818|r 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKD-KPSFS 77 (245)
Q Consensus 1 ~~~~~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~-~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~-~p~f~ 77 (245)
T Consensus 1 ~~~~~~~~f~fyD~ETtG~~~~~dqi~Qfa~i~td~~ln~i~~~~~~~c~~~~~~lP~p~A~lvt~itp~~~~~~~~~~~ 80 (477)
T PRK11779 1 MDKNMQPTFLWHDYETFGANPALDRPAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEA 80 (477)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCHHHHHHCCCCHH
T ss_conf 97667785799945368999877650125778987753725774105644799989993043114889999986699879
Q ss_pred HHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCC-----CCCCHHCCCHHCCCC---C------CC----CC-
Q ss_conf 0234477753002320231023-224311210000011222-----210000110000000---1------77----64-
Q gi|254780818|r 78 SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDP-----LDPSRIIDTLSIARR---K------HP----SS- 137 (245)
Q Consensus 78 ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~-----~~~~~~iDTl~lar~---~------~p----~~- 137 (245)
T Consensus 81 ~~~~~i~~~~~~~~t~~iGyNsi~FDee~~R~~fy~nl~dPY~~~~~ngNsR~Dll~~~r~~~~~~p~~i~~p~~~~G~~ 160 (477)
T PRK11779 81 EFAARIHAEFSQPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLP 160 (477)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 99999999966898489822775448999999999861345766424897057999999999874836611673799985
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22237899971875455566640269999999999
Q gi|254780818|r 138 RNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYI 172 (245)
Q Consensus 138 ~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~ 172 (245)
T Consensus 161 sfKLe~la~aNgi~h--~~AHDAl~Dv~aTi~lak 193 (477)
T PRK11779 161 SFKLEHLTKANGIEH--ENAHDAMSDVYATIAMAK 193 (477)
T ss_pred EEEHHHHHHHCCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 444999998559876--554106889999999999