HHsearch alignment for GI: 254780818 and conserved domain: TIGR01405
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=337.72 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=178.3
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEECC-EECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89998467888888888999999999999-88031379898588822886572420210123224852100234477753
Q gi|254780818|r 9 KIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~Iieigav~i~~~-~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 206 yVVfD~ETTGLsp~~d~iIE~gA~k~~nGk~ii-~~~~~FikP~-~~l~~~~~elT~ITq~ml~n~~~~~~vL~k~~~f~ 283 (1264)
T TIGR01405 206 YVVFDIETTGLSPQYDEIIEFGAVKVKNGKRII-DKFQFFIKPK-EPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFL 283 (1264)
T ss_pred EEEEEEEECCCCCCCCCEEEEEEEEEECCCEEE-EEHHHHCCCC-CCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 799603515888861424678758874685762-3123232887-54675426624664797379841789999999976
Q ss_pred HCCCCEEEEEC-CCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 00232023102-32243112100000112222100001100000001776-42223789997187545556664026999
Q gi|254780818|r 88 NEQNAEWIAHN-AKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSH 165 (245)
Q Consensus 88 ~~~~~~lVaHN-a~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~ 165 (245)
T Consensus 284 ~--d~ilVAHNGasFD~~Fl~~~~~k~~~~~~-~~p~IDTL~Lar~lnP~y~sh~Lg~~~~Kl~v~~~~e~~HRA~YDa~ 360 (1264)
T TIGR01405 284 K--DSILVAHNGASFDIGFLNTNFEKVGLEPL-ENPVIDTLELARALNPEYKSHRLGEIAKKLGVDLDDERHHRADYDAE 360 (1264)
T ss_pred C--CEEEEECCCCCCCHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 9--75888627610366889889876277423-36511388999983731134454223332055215330124334799
Q ss_pred HHHHHHHHHHHCCCCCC-CCC-CCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999973057666-654-4432-------111101112223443211235634578999999999999870
Q gi|254780818|r 166 LLSDVYIKMMVGGSQIN-FGF-KTNE-------DRFFKEEKKTVPNISLLKRDKPLFTRITKEELDEHDKTIQTL 231 (245)
Q Consensus 166 ~~a~v~~~ll~g~~q~~-l~l-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~H~~~l~~l 231 (245)
T Consensus 361 ~t~~vF~~~~~~~~e~gGi~~l~~lni~e~~~l~~~~~y~r~~~~~~~i~~kNq~GLKnLykLvS~s~~~Yfy~~ 435 (1264)
T TIGR01405 361 ATAKVFIVMVEQLKEKGGITNLEELNIQELDKLSSEELYKRLRPNHIIILVKNQAGLKNLYKLVSISLTKYFYTR 435 (1264)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999875037211234057889842052345423745157877630347889999879986531468