HHsearch alignment for GI: 254780818 and conserved domain: cd05778

>cd05778 DNA_polB_zeta_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=97.55  E-value=0.00037  Score=45.93  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             CCCCEEEEECCCCC-----CCCCCCEEEEEEEEEEECCEE-CC---CEEEE-EECCCCCCCCHHHEEECCCCCCCCCCCC
Q ss_conf             77758999846788-----888888899999999999988-03---13798-9858882288657242021012322485
Q gi|254780818|r    5 NKMRKIVFDIETTG-----LDSKNDRIIEIGAVELLDYSK-TN---RTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKP   74 (245)
Q Consensus         5 ~~mr~iv~D~ETTG-----l~~~~d~Iieigav~i~~~~~-~~---~~f~~-~i~P~~~~i~~~~~~ihGIt~~~l~~~p   74 (245)
T Consensus         2 q~LtiLSfDIe~~sr~~~fPdP~~D~I~~I~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~   79 (231)
T cd05778           2 QHLTILSLEVHVNTRGDLLPDPEFDPISAIFY-CIDDDVSPFILDANKVGVIIVDELKSNAS-NGRIRSGLSGIPVEVVE   79 (231)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCCCCEEEEEE-EECCCCCCCCCCCCCEEEEEECCCCCCHH-HCCCCCCCCCCEEEEEC
T ss_conf             82289999999888899996989785789999-96268765445665200799558654112-10222578996499979


Q ss_pred             CCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHH
Q ss_conf             21002344777530023-20231023-224311210000
Q gi|254780818|r   75 SFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQ  111 (245)
Q Consensus        75 ~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~  111 (245)
T Consensus        80 ~E~eLl~~f~~~v~~~DPDii~Gyni~~fd~~Yl~~Ra~  118 (231)
T cd05778          80 SELELFEELIDLVRRFDPDILSGYEIQRSSWGYLIERAA  118 (231)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHH
T ss_conf             999999999999997099989622556686189999999