HHsearch alignment for GI: 254780818 and conserved domain: cd06144
>cd06144 REX4_like This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required fo
Probab=99.94 E-value=7.6e-27 Score=187.70 Aligned_cols=148 Identities=19% Similarity=0.359 Sum_probs=113.4
Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEEECCEECCC-EEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999846788888888899999999999988031-3798985888228865724202101232248521002344777530
Q gi|254780818|r 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNR-TFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 (245)
Q Consensus 10 iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~-~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~ 88 (245)
T Consensus 1 valDcEm~g~~~~~~~-~~larv~vvd~--~g~~v~d~~V~P~-~~V~d~~T~~sGIt~~~l~~a~~~~~v~~~~~~~l~ 76 (152)
T cd06144 1 VALDCEMVGVGPDGSE-SALARVSIVNE--DGNVVYDTYVKPQ-EPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVAELLK 76 (152)
T ss_pred CEEEEEECCCCCCCCE-EEEEEEEEEEC--CCCEEEEEEECCC-CCCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9898760335289987-89999999967--8999988723699-767876356248579997389999999999999853
Q ss_pred CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCC--CCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCHHHHH
Q ss_conf 023202310232243112100000112222100001100000--001776422237899971-87545556664026999
Q gi|254780818|r 89 EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA--RRKHPSSRNDLNSLCKRY-GITISHRSKHGALLDSH 165 (245)
Q Consensus 89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~la--r~~~p~~~~~L~~l~~~~-~i~~~~r~~H~Al~Da~ 165 (245)
T Consensus 77 --~~ilVGH~l~~Dl~~L~l~~~--------~~~i~DT~~~~~~~~~~~~~~~sLk~L~~~~Lg~~Iq~-~~H~s~eDA~ 145 (152)
T cd06144 77 --GRILVGHALKNDLKVLKLDHP--------KKLIRDTSKYKPLRKTAKGKSPSLKKLAKQLLGLDIQE-GEHSSVEDAR 145 (152)
T ss_pred --CCEEEECCHHHHHHHHHCCCC--------CCEEEEEEEEHHHHHCCCCCCCCHHHHHHHHCCCCCCC-CCCCCHHHHH
T ss_conf --887986064646999624388--------76068855642245416889927999999985885899-7969699999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780818|r 166 LLSDVYI 172 (245)
Q Consensus 166 ~~a~v~~ 172 (245)
T Consensus 146 at~~Lfk 152 (152)
T cd06144 146 AAMRLYR 152 (152)
T ss_pred HHHHHHC
T ss_conf 9999859