HHsearch alignment for GI: 254780818 and conserved domain: pfam00929
>pfam00929 Exonuc_X-T Exonuclease. This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;
Probab=100.00 E-value=1.5e-38 Score=260.80 Aligned_cols=160 Identities=35% Similarity=0.578 Sum_probs=143.2
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89998467888888888999999999999880313798985888228865724202101232248521002344777530
Q gi|254780818|r 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~ 88 (245)
T Consensus 1 ~v~~D~ETTGl~~~~~~Iieigav~~~~~~~~~~~~~~~v~P~-~~i~~~~~~i~GIt~~~l~~~~~~~~~~~~~~~~l~ 79 (162)
T pfam00929 1 LVVIDCETTGLDPEKDRIIEIAAVSIVGGENIGPVFDTYVKPE-RLITDEATKFHGITPEMLRNAPSFEEVLEAFLEFLK 79 (162)
T ss_pred CEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEEEEEECCC-CCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9899986899989997589999999999977655567877788-888999998739787775415311779999999842
Q ss_pred CCCCEEEEECCCCCCCEEEECHHCCCCCC-CCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 02320231023224311210000011222-21000011000000017764-22237899971875455566640269999
Q gi|254780818|r 89 EQNAEWIAHNAKFDVGFINAELQRINKDP-LDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSHL 166 (245)
Q Consensus 89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~-~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~Al~Da~~ 166 (245)
T Consensus 80 -~~~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~~L~~l~~~~~i~~~~-~aH~Al~Da~~ 157 (162)
T pfam00929 80 -KLKILVGHNASFDVGFLLYDDLRFLKLPHPKLNDVIDTLILDKATYKGFKRRSLDALAEKLGLEKIQ-RAHRALDDARA 157 (162)
T ss_pred -CCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC-CCCCHHHHHHH
T ss_conf -5857777887789999999999858633663333044899999975044679989999885999988-86782999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780818|r 167 LSDVY 171 (245)
Q Consensus 167 ~a~v~ 171 (245)
T Consensus 158 t~~lf 162 (162)
T pfam00929 158 TAELF 162 (162)
T ss_pred HHHHC
T ss_conf 99879