HHsearch alignment for GI: 254780818 and conserved domain: pfam03104

>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=98.22  E-value=3e-06  Score=59.04  Aligned_cols=101  Identities=20%  Similarity=0.229  Sum_probs=62.5

Q ss_pred             CCCCEEEEECCCCCC-----CCCCCEEEEEEEEEEECCEECC-CEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCH
Q ss_conf             777589998467888-----8888889999999999998803-1379898588822886572420210123224852100
Q gi|254780818|r    5 NKMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS   78 (245)
Q Consensus         5 ~~mr~iv~D~ETTGl-----~~~~d~Iieigav~i~~~~~~~-~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~e   78 (245)
T Consensus        84 pplrilsfDIEc~~~~g~FP~~~~d~IiqIs~~~~~~g~~~~~~~~~~tl~~~-~~i~~---------~~~V~~f~~E~~  153 (254)
T pfam03104        84 PPLRVLSFDIECTSLKGKFPENEKDPIIQISCMLYREGEPDPIEDKLFTLKSC-ALIEI---------GGEVYIFPSEKE  153 (254)
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEECCC-CCCCC---------CCEEEEECCHHH
T ss_conf             88539999889588899999878983899998988567898632069980787-76778---------977999599999


Q ss_pred             HHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCC
Q ss_conf             2344777530023-20231023-2243112100000112
Q gi|254780818|r   79 IFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINK  115 (245)
Q Consensus        79 v~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~  115 (245)
T Consensus       154 ll~~f~~~i~~~dpdii~gyNi~~FD~~yl~~Ra~~l~~  192 (254)
T pfam03104       154 LLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKILGL  192 (254)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf             999999998751998999667877888999999999689