HHsearch alignment for GI: 254780818 and conserved domain: pfam03104
>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=98.22 E-value=3e-06 Score=59.04 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCCC-----CCCCCEEEEEEEEEEECCEECC-CEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCH
Q ss_conf 777589998467888-----8888889999999999998803-1379898588822886572420210123224852100
Q gi|254780818|r 5 NKMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTN-RTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 (245)
Q Consensus 5 ~~mr~iv~D~ETTGl-----~~~~d~Iieigav~i~~~~~~~-~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~e 78 (245)
T Consensus 84 pplrilsfDIEc~~~~g~FP~~~~d~IiqIs~~~~~~g~~~~~~~~~~tl~~~-~~i~~---------~~~V~~f~~E~~ 153 (254)
T pfam03104 84 PPLRVLSFDIECTSLKGKFPENEKDPIIQISCMLYREGEPDPIEDKLFTLKSC-ALIEI---------GGEVYIFPSEKE 153 (254)
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEECCC-CCCCC---------CCEEEEECCHHH
T ss_conf 88539999889588899999878983899998988567898632069980787-76778---------977999599999
Q ss_pred HHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCC
Q ss_conf 2344777530023-20231023-2243112100000112
Q gi|254780818|r 79 IFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINK 115 (245)
Q Consensus 79 v~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~ 115 (245)
T Consensus 154 ll~~f~~~i~~~dpdii~gyNi~~FD~~yl~~Ra~~l~~ 192 (254)
T pfam03104 154 LLRRFFEFIRQYDPDIITGYNGDNFDWPYILNRAKILGL 192 (254)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 999999998751998999667877888999999999689