HHsearch alignment for GI: 254780818 and conserved domain: pfam10108
>pfam10108 Exon_PolB Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=97.48 E-value=0.001 Score=43.22 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=75.5
Q ss_pred CCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC-C
Q ss_conf 888899999999999988031379898588822886572420210123224852100234477753002320231023-2
Q gi|254780818|r 22 KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAEWIAHNA-K 100 (245)
Q Consensus 22 ~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~~~~~~lVaHNa-~ 100 (245)
T Consensus 7 ~lhriVaIs~v~~~~~~~~-~-v~slg~~----------------------~~~E~~ll~~F~~~i~~~~P~LVs~NG~g 62 (211)
T pfam10108 7 PLHRIVAISAVIADDDGGF-K-VWSLGDP----------------------ESSEKELIQRFFDGIEKYTPQLVSFNGRG 62 (211)
T ss_pred CCEEEEEEEEEEEECCCCE-E-EEECCCC----------------------CCCHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 6501699999999669927-9-9878899----------------------98999999999999984398288656865
Q ss_pred CCCCEEEECHHCCCCCCCC------------------CCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC---
Q ss_conf 2431121000001122221------------------0000110000000177642223789997187545556664---
Q gi|254780818|r 101 FDVGFINAELQRINKDPLD------------------PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHG--- 159 (245)
Q Consensus 101 FD~~fL~~el~r~~~~~~~------------------~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~--- 159 (245)
T Consensus 63 FDlPvL~~RAl~~gi~ap~~~~~~~~~~kw~nY~~Ry~~~H~DLmd~l~~~g~~~~~~Ld~~a~l~G~PGK~-~~~G~~V 141 (211)
T pfam10108 63 FDLPVLHYRALKHGVSAPRYFDTGDRDFKWNNYFNRYSTRHLDLMDLLSGYGARANAPLDEVAALLGLPGKM-GVDGSQV 141 (211)
T ss_pred CCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCC-CCCHHHH
T ss_conf 548999999998188850787567876654441123565445489998732886778989999981999878-7764589
Q ss_pred ---------------CHHHHHHHHHHHHHH
Q ss_conf ---------------026999999999999
Q gi|254780818|r 160 ---------------ALLDSHLLSDVYIKM 174 (245)
Q Consensus 160 ---------------Al~Da~~~a~v~~~l 174 (245)
T Consensus 142 ~~~~~~G~l~~I~~YCe~DvlnTylv~LR~ 171 (211)
T pfam10108 142 WELYQAGKIEEIRDYCETDVLNTYLVYLRF 171 (211)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999985988899999887689999999999