HHsearch alignment for GI: 254780818 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=97.68 E-value=0.00027 Score=46.78 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=88.1
Q ss_pred CCEEEEECCCCCC-----CCC--CCEEEEEEEEEEECCEECCCEEEE-EECCCCCCCCHHHEEECCCCCCCCCCCCCCCH
Q ss_conf 7589998467888-----888--888999999999999880313798-98588822886572420210123224852100
Q gi|254780818|r 7 MRKIVFDIETTGL-----DSK--NDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKPSFSS 78 (245)
Q Consensus 7 mr~iv~D~ETTGl-----~~~--~d~Iieigav~i~~~~~~~~~f~~-~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~e 78 (245)
T Consensus 3 ~~i~s~DIEt~~~~~~~p~~~~~~d~i~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~---~~~~~~E~~ 71 (471)
T smart00486 3 LKILSFDIETYTDGGLFPDPLIFEDEIIQISLVINDGDKKGPEERICFTLGTC-KEI-------DGVE---VYEFNNEKE 71 (471)
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCC-CCC-------CCCE---EEECCCHHH
T ss_conf 46999998966799999998889984999999982198787887754303676-778-------9988---998099999
Q ss_pred HHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCCC--------------------------------CCCHHC
Q ss_conf 2344777530023-20231023-2243112100000112222--------------------------------100001
Q gi|254780818|r 79 IFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPL--------------------------------DPSRII 124 (245)
Q Consensus 79 v~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~~--------------------------------~~~~~i 124 (245)
T Consensus 72 ll~~f~~~i~~~dpdii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 151 (471)
T smart00486 72 LLKAFLEFIKKYDPDIIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVI 151 (471)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 99999999987199999965887876899999999848964776373577876432033210125663148998559997
Q ss_pred CCHHCCCCCCCCCCCCHHHHHHHHCCC----CCC---------------CCCCCCHHHHHHHHHHHHHH
Q ss_conf 100000001776422237899971875----455---------------56664026999999999999
Q gi|254780818|r 125 DTLSIARRKHPSSRNDLNSLCKRYGIT----ISH---------------RSKHGALLDSHLLSDVYIKM 174 (245)
Q Consensus 125 DTl~lar~~~p~~~~~L~~l~~~~~i~----~~~---------------r~~H~Al~Da~~~a~v~~~l 174 (245)
T Consensus 152 D~~~~~~~~~~l~sy~L~~v~~~~l~~~k~d~~~~~i~~~~~~~~~~~~~~~~Y~~~D~~l~~~l~~~~ 220 (471)
T smart00486 152 DLYNLYKNKLKLPSYKLDTVAEYLLGKEKDDLPYKDIPELYNLNYKLRDELLEYCIQDAVLTLKLFNKL 220 (471)
T ss_pred EHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999886044668889999999577888899899999985393679999999999999999999986