HHsearch results for GI: 254780818 and protein with PDBid: 1noy_A
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=93.52 E-value=0.065 Score=30.56 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCCCCC---C--CCCEEEEEEEEEEECCEECCCEEEEEECC---CCC--CCCHHHEE------ECCCC--
Q ss_conf 7775899984678888---8--88889999999999998803137989858---882--28865724------20210--
Q gi|254780818|r 5 NKMRKIVFDIETTGLD---S--KNDRIIEIGAVELLDYSKTNRTFQVFLCP---NGR--KNSPEALK------LHGIT-- 66 (245)
Q Consensus 5 ~~mr~iv~D~ETTGl~---~--~~d~Iieigav~i~~~~~~~~~f~~~i~P---~~~--~i~~~~~~------ihGIt-- 66 (245)
.+++...+|+||++-+ | ..+.|++|++..-.+. .+.++.-. ... +.+..... ..++.
T Consensus 104 ~~i~i~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (388)
T 1noy_A 104 KFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDD-----RFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQE 178 (388)
T ss_dssp GGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTT-----EEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHH
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC-----EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33079888787436676786310021004788864798-----5999985154456666655555543223345565545
Q ss_pred -CCC--CCCCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------
Q ss_conf -123--2248521002344777530023-20231023-224311210000011222------------------------
Q gi|254780818|r 67 -DEF--LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------ 117 (245)
Q Consensus 67 -~~~--l~~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------ 117 (245)
.+. +....+-.+.+..|++++...+ .+++|||. .||+..|-.-+.+.+...
T Consensus 179 ~~d~v~~~~~~~E~~LL~~F~~~i~~~dPDiI~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (388)
T 1noy_A 179 ILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKE 258 (388)
T ss_dssp HHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCE
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCE
T ss_conf 67886999839999999999999987388889870678851789999999852642101137567664225540256522
Q ss_pred ---CCCCHHCCCHHCCCCCC--CCCCCCHHHHHHHHCCCCC---CCCC------------CCCHHHHHHHHHHHHHH
Q ss_conf ---21000011000000017--7642223789997187545---5566------------64026999999999999
Q gi|254780818|r 118 ---LDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITIS---HRSK------------HGALLDSHLLSDVYIKM 174 (245)
Q Consensus 118 ---~~~~~~iDTl~lar~~~--p~~~~~L~~l~~~~~i~~~---~r~~------------H~Al~Da~~~a~v~~~l 174 (245)
......+|.+.+.+... ...+++|+..+..+.-... .... .-.+-||.++.+++.+|
T Consensus 259 ~~~~~g~~~~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~kli~Yn~~D~~l~~~L~~kl 335 (388)
T 1noy_A 259 IYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp EEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56421421678999999763034232028889998668876672566666654189999999999999999999997