HHsearch results for GI: 254780818 and protein with PDBid: 1y97_A

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00  E-value=4.8e-35  Score=237.59  Aligned_cols=169  Identities=24%  Similarity=0.318  Sum_probs=133.8

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCE---------------ECCCEEEEEECCCCCCCCHHHEEECCCCCCC
Q ss_conf             7775899984678888888889999999999998---------------8031379898588822886572420210123
Q gi|254780818|r    5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNGRKNSPEALKLHGITDEF   69 (245)
Q Consensus         5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~---------------~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~   69 (245)
                      +...+||||+||||+++..|+|||||||.+.+..               .+.+.|+.||+|. +++++.+.+|||||+++
T Consensus         8 ~~~~~vvlD~ETTGl~~~~~~Iiei~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~P~-~~i~~~~~~i~git~~~   86 (238)
T 1y97_A            8 RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPE-RPFTAKASEITGLSSEG   86 (238)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCS-SCCCHHHHHHHCCCHHH
T ss_pred             CCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEEECCC-CCCCHHHHHHCCCCHHH
T ss_conf             89979999988189899998669999999989952223100002456662102135788889-98998899860899999


Q ss_pred             CCCCCC--CC----HHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC-------
Q ss_conf             224852--10----0234477753002320231023-224311210000011222210000110000000177-------
Q gi|254780818|r   70 LKDKPS--FS----SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP-------  135 (245)
Q Consensus        70 l~~~p~--f~----ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p-------  135 (245)
                      |.+++.  +.    +++..|.+++. .+.++||||+ .||..||+++|.|+|..+.....++||+.++|.+.+       
T Consensus        87 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~hn~~~FD~~~L~~~~~r~~~~~~~~~~~iDtl~~~~~l~~~~~~~~~  165 (238)
T 1y97_A           87 LARCRKAGFDGAVVRTLQAFLSRQA-GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTR  165 (238)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTSC-SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-----
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCC
T ss_conf             9853153058999999999887416-882699965187789999999998089888898787789999997350754445


Q ss_pred             --C-CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             --6-4222378999718754555666402699999999999973
Q gi|254780818|r  136 --S-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV  176 (245)
Q Consensus       136 --~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~  176 (245)
                        + .+.+|++||++|+... ..++|+|+.||++|++||++|..
T Consensus       166 ~~~~~~~~L~~l~~~~~~~~-~~~aH~Al~Da~~t~~i~~~l~~  208 (238)
T 1y97_A          166 ARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTLLLIFLHRAA  208 (238)
T ss_dssp             -----CCSHHHHHHHHHSSC-CC---CHHHHHHHHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             66668858999999964999-89788989999999999999999