HHsearch results for GI: 254780818 and protein with PDBid: 1zbh_A
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=227.57 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=138.2
Q ss_pred CEEEEECCCC---CCCC-CCCEEEEEEEEEEECC-EECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCHHHH
Q ss_conf 5899984678---8888-8888999999999999-88031379898588-822886572420210123224852100234
Q gi|254780818|r 8 RKIVFDIETT---GLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 (245)
Q Consensus 8 r~iv~D~ETT---Gl~~-~~d~Iieigav~i~~~-~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~ 81 (245)
.+||||+||| |..+ ..++|||||||.|..+ ..+.++|++||+|. ..++++++.++||||+++|.+||+|.+|++
T Consensus 79 ~~vv~D~EtTc~~~~~~~~~~EIIEIgaV~vd~~~~~i~d~F~~~VkP~~~~~ls~~~~~lTGIT~e~V~~Ap~f~evl~ 158 (299)
T 1zbh_A 79 YICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLK 158 (299)
T ss_dssp EEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHH
T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHH
T ss_conf 89999985368899988899748999889998568759658999999898986798898851948999746787999999
Q ss_pred HHHHHHHCCCCEEEEE-------CCCCCCC-EEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCC--CCCCHHHHHHHHCC
Q ss_conf 4777530023202310-------2322431-121000001122221-00001100000001776--42223789997187
Q gi|254780818|r 82 EFWDFFNEQNAEWIAH-------NAKFDVG-FINAELQRINKDPLD-PSRIIDTLSIARRKHPS--SRNDLNSLCKRYGI 150 (245)
Q Consensus 82 ~f~~fi~~~~~~lVaH-------Na~FD~~-fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~--~~~~L~~l~~~~~i 150 (245)
+|.+|++. ..+++| ++.||.. ||..++.+.+...+. ...++|+..+.+..++. .+.+|+++|++|||
T Consensus 159 ~f~~~l~~--~~~~~~~~~~~~~~g~~D~~~fL~~~~~~~~i~~p~~~~~~iDl~~~~~~~~~~~~~~~~L~~l~~~~gi 236 (299)
T 1zbh_A 159 KVIDLMKL--KELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 236 (299)
T ss_dssp HHHHHHHH--TTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHCC--CCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf 99999705--8402466257750507669999999999708998743574776999999984687568799999998699
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 545556664026999999999999730576666
Q gi|254780818|r 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 (245)
Q Consensus 151 ~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l 183 (245)
+...+ +|+|+.||+.||+||++|+..|.+..+
T Consensus 237 ~~~G~-~H~AldDA~~tA~Il~klL~~g~~~~i 268 (299)
T 1zbh_A 237 DYDGR-PNCGLDDSKNIARIAVRMLQDGCELRI 268 (299)
T ss_dssp CCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98998-728399999999999999976986662