HHsearch results for GI: 254780818 and protein with PDBid: 2gv9_A
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B*
Probab=98.52 E-value=7.8e-07 Score=61.32 Aligned_cols=167 Identities=21% Similarity=0.226 Sum_probs=97.1
Q ss_pred CCCEEEEECCCC-------CC-CCC--CCEEEEEEEEEEECCEECCCEEEEEE-CCCCCCCCHHH---EEECCCCCCCCC
Q ss_conf 775899984678-------88-888--88899999999999988031379898-58882288657---242021012322
Q gi|254780818|r 6 KMRKIVFDIETT-------GL-DSK--NDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEA---LKLHGITDEFLK 71 (245)
Q Consensus 6 ~mr~iv~D~ETT-------Gl-~~~--~d~Iieigav~i~~~~~~~~~f~~~i-~P~~~~i~~~~---~~ihGIt~~~l~ 71 (245)
..|...||+||. |+ +|. .|.||+|+++-...+... ..+.++ .....+.+... ..-.++.+-.+.
T Consensus 319 plrvlsfDIE~~s~~~~~~~FP~a~~~~D~Ii~IS~~~~~~g~~~--~~~~~l~tl~~~~~~~~~~~~~~~~~~~~~~V~ 396 (1193)
T 2gv9_A 319 AYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTA--LEHVLLFSLGSCDLPESHLNELAARGLPTPVVL 396 (1193)
T ss_dssp CCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCC--EEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 977999987867798888889898888982899999998768876--645999944775555332234444578986799
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------------CC
Q ss_conf 48521002344777530023-20231023-224311210000011222------------------------------21
Q gi|254780818|r 72 DKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------------LD 119 (245)
Q Consensus 72 ~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------------~~ 119 (245)
.-++-.+.+..|.+++...+ .++++||. .||+.||..-+..++... +.
T Consensus 397 ~f~sE~eLL~~F~~~i~~~dPDIItGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~ 476 (1193)
T 2gv9_A 397 EFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193)
T ss_dssp EESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET
T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEC
T ss_conf 80999999999999976539988997255477478999999997799878827557656620203566655654046234
Q ss_pred CCHHCCCHHCCCCCCCCCCCCHHHHHHHHC-CC---CCCCC---------------CCCCHHHHHHHHHHHHHH
Q ss_conf 000011000000017764222378999718-75---45556---------------664026999999999999
Q gi|254780818|r 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYG-IT---ISHRS---------------KHGALLDSHLLSDVYIKM 174 (245)
Q Consensus 120 ~~~~iDTl~lar~~~p~~~~~L~~l~~~~~-i~---~~~r~---------------~H~Al~Da~~~a~v~~~l 174 (245)
.--++|.+.+++..+.-.+++|+++++.+- .. ++..+ +.-.+.||.++.+++.++
T Consensus 477 Gri~iDl~~~~k~~~kL~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv~~L~~kl 550 (1193)
T 2gv9_A 477 GMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66998437887663046668899999997277776668888888876567789999999988799999999998