HHsearch results for GI: 254780818 and protein with PDBid: 2hbj_A

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.30  E-value=1.5e-06  Score=59.45  Aligned_cols=133  Identities=18%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r    6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD   85 (245)
Q Consensus         6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~   85 (245)
                      ..+.|.|||||++.+....++.   .|.+..    ++. ..+|.|.  .+...           +       ..+.++  
T Consensus       105 ~~~~iavDtE~~~~~t~~~~l~---LiQi~t----~~~-~~liD~l--~l~~~-----------l-------~~L~~l--  154 (410)
T 2hbj_A          105 NTKEIAVDLEHHDYRSYYGIVC---LMQIST----RER-DYLVDTL--KLREN-----------L-------HILNEV--  154 (410)
T ss_dssp             TCSEEEEEEEEECSSSSSCEEE---EEEEEC----SSC-EEEEETT--TTTTT-----------G-------GGGHHH--
T ss_pred             CCCEEEEEEEECCCCCCCCCEE---EEEEEE----CCC-CEEEEEC--CCCCC-----------H-------HHHHHH--
T ss_conf             5991999704778851677068---999981----897-7898501--45335-----------8-------999999--


Q ss_pred             HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC----------
Q ss_conf             530023202310232243112100000112222100001100000001776422237899971-875455----------
Q gi|254780818|r   86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISH----------  154 (245)
Q Consensus        86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~----------  154 (245)
                       +...+-.-|+||+.||+.+|.+.+   |..   ...++||...++.+- ..+.+|++|+.+| |+.+..          
T Consensus       155 -l~d~~I~KV~H~~~~Dl~~L~~~~---g~~---~~~~fDT~ia~~~l~-~~~~sL~~L~~~~l~~~l~K~~q~sDW~~R  226 (410)
T 2hbj_A          155 -FTNPSIVKVFHGAFMDIIWLQRDL---GLY---VVGLFDTYHASKAIG-LPRHSLAYLLENFANFKTSKKYQLADWRIR  226 (410)
T ss_dssp             -HTCTTSEEEESSCHHHHHHHHHHH---CCC---CSSEEEHHHHHHHHT-CSCCSHHHHHHHHSCCCCCCTTTTSCTTCS
T ss_pred             -HCCCCCEEEEECHHHHHHHHHHHC---CCC---CCCCCCHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCHHHHHHCCC
T ss_conf             -749994299955787799999845---756---787202699999809-887569999998736665641334200455


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             ----5666402699999999999973
Q gi|254780818|r  155 ----RSKHGALLDSHLLSDVYIKMMV  176 (245)
Q Consensus       155 ----r~~H~Al~Da~~~a~v~~~ll~  176 (245)
                          .+.+-|..||..|-.+|-.|..
T Consensus       227 PL~~~qi~YAa~Dv~~Ll~ly~~L~~  252 (410)
T 2hbj_A          227 PLSKPMTAAARADTHFLLNIYDQLRN  252 (410)
T ss_dssp             SCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             58799999998537889999999999