HHsearch results for GI: 254780818 and protein with PDBid: 2is3_A

>2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12}
Probab=100.00  E-value=2.4e-38  Score=258.24  Aligned_cols=175  Identities=25%  Similarity=0.383  Sum_probs=144.2

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEEEEEEEEC----CEECCCEEEEEECC-CCCCCCHHHEEECCCCCCC-CCCCCCCCH
Q ss_conf             77758999846788888888899999999999----98803137989858-8822886572420210123-224852100
Q gi|254780818|r    5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF-LKDKPSFSS   78 (245)
Q Consensus         5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~----~~~~~~~f~~~i~P-~~~~i~~~~~~ihGIt~~~-l~~~p~f~e   78 (245)
                      .+++.||||+|||||+|..|+|||||||.+..    ....+++|+.+++| ...++++++.+||||+++. +.+++++.+
T Consensus        15 ~~~~~Vv~D~ETTGl~p~~d~IIeIgav~i~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~i~gi~~~~~~~~~~~~~~   94 (215)
T 2is3_A           15 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYE   94 (215)
T ss_dssp             TTEEEEEEEEEESSSCTTTSCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCHHH
T ss_pred             CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
T ss_conf             28985999837999999998328999999895688868335359998526889998856876025213878707986125


Q ss_pred             HHHHHHHHHH-------CCCCEEEEECCCCCCCEEEECHHCCCCCC--CCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             2344777530-------02320231023224311210000011222--21000011000000017764222378999718
Q gi|254780818|r   79 IFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG  149 (245)
Q Consensus        79 v~~~f~~fi~-------~~~~~lVaHNa~FD~~fL~~el~r~~~~~--~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~  149 (245)
                      ++.++.+++.       ..++++||||++||++||++++.|+|.+.  +....++||+.+++..++  +++|+.+|.+||
T Consensus        95 ~~~~~~~~i~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~l~~~~~~~~~~iDt~~~~~~~~~--~~~L~~l~~~~~  172 (215)
T 2is3_A           95 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQTAG  172 (215)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEEEETTHHHHHHHHHHHHHHHTCTTCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHCC
T ss_conf             359999999999876314655010037687699999999983999886533016779999988736--324999999859


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             75455566640269999999999997305766
Q gi|254780818|r  150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQI  181 (245)
Q Consensus       150 i~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~  181 (245)
                      ++.+++++|+||+||++||+||.+|+...++.
T Consensus       173 i~~~~~~~H~Al~Da~~ta~lf~~l~~~~~~~  204 (215)
T 2is3_A          173 MDFDSTQAHSALYDTERTAVLFCEIVNRWKRL  204 (215)
T ss_dssp             CCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999976786999999999999999999975