HHsearch results for GI: 254780818 and protein with PDBid: 2is3_A
>2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12}
Probab=100.00 E-value=2.4e-38 Score=258.24 Aligned_cols=175 Identities=25% Similarity=0.383 Sum_probs=144.2
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEEEC----CEECCCEEEEEECC-CCCCCCHHHEEECCCCCCC-CCCCCCCCH
Q ss_conf 77758999846788888888899999999999----98803137989858-8822886572420210123-224852100
Q gi|254780818|r 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF-LKDKPSFSS 78 (245)
Q Consensus 5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~----~~~~~~~f~~~i~P-~~~~i~~~~~~ihGIt~~~-l~~~p~f~e 78 (245)
.+++.||||+|||||+|..|+|||||||.+.. ....+++|+.+++| ...++++++.+||||+++. +.+++++.+
T Consensus 15 ~~~~~Vv~D~ETTGl~p~~d~IIeIgav~i~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~i~gi~~~~~~~~~~~~~~ 94 (215)
T 2is3_A 15 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYE 94 (215)
T ss_dssp TTEEEEEEEEEESSSCTTTSCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH
T ss_conf 28985999837999999998328999999895688868335359998526889998856876025213878707986125
Q ss_pred HHHHHHHHHH-------CCCCEEEEECCCCCCCEEEECHHCCCCCC--CCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 2344777530-------02320231023224311210000011222--21000011000000017764222378999718
Q gi|254780818|r 79 IFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 (245)
Q Consensus 79 v~~~f~~fi~-------~~~~~lVaHNa~FD~~fL~~el~r~~~~~--~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~ 149 (245)
++.++.+++. ..++++||||++||++||++++.|+|.+. +....++||+.+++..++ +++|+.+|.+||
T Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~l~~~~~~~~~~iDt~~~~~~~~~--~~~L~~l~~~~~ 172 (215)
T 2is3_A 95 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQTAG 172 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETTHHHHHHHHHHHHHHHTCTTCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHCC
T ss_conf 359999999999876314655010037687699999999983999886533016779999988736--324999999859
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 75455566640269999999999997305766
Q gi|254780818|r 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 (245)
Q Consensus 150 i~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~ 181 (245)
++.+++++|+||+||++||+||.+|+...++.
T Consensus 173 i~~~~~~~H~Al~Da~~ta~lf~~l~~~~~~~ 204 (215)
T 2is3_A 173 MDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 204 (215)
T ss_dssp CCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999976786999999999999999999975