HHsearch results for GI: 254780818 and protein with PDBid: 3iay_A

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.33  E-value=1.1e-06  Score=60.30  Aligned_cols=157  Identities=19%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             CCCEEEEECCCCCC-----CCCCCEEEEEEEEEEECCEECCCEEEE-EECCCCCCCCHHHEEECCCCCCCCCCCCCCCHH
Q ss_conf             77589998467888-----888888999999999999880313798-985888228865724202101232248521002
Q gi|254780818|r    6 KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI   79 (245)
Q Consensus         6 ~mr~iv~D~ETTGl-----~~~~d~Iieigav~i~~~~~~~~~f~~-~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev   79 (245)
                      .+|.+.||+||++-     +|..|.|++|+++.-..+.......+. ..++. .+++          ...+...++-.+.
T Consensus       248 plrilsfDIE~~~~~g~fp~~~~d~ii~I~~~~~~~g~~~~~~~~~~~~~~~-~~~~----------~~~v~~~~sE~eL  316 (919)
T 3iay_A          248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTC-SPIT----------GSMIFSHATEEEM  316 (919)
T ss_dssp             CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCC-CCBT----------TBEEEEESSHHHH
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCC-CCCC----------CCEEEEECCHHHH
T ss_conf             8279999999786899886433451124678762267766426413415776-7889----------9679981999999


Q ss_pred             HHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCCC---------------------------------CCCHHC
Q ss_conf             344777530023-20231023-2243112100000112222---------------------------------100001
Q gi|254780818|r   80 FSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPL---------------------------------DPSRII  124 (245)
Q Consensus        80 ~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~~---------------------------------~~~~~i  124 (245)
                      +..|.+|+...| .+++|||. .||+.+|..-...+|.+.+                                 ..--.+
T Consensus       317 L~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~i  396 (919)
T 3iay_A          317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL  396 (919)
T ss_dssp             HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
T ss_conf             99999998662998798757857537999999998587514331765776644565643454335644228987378998


Q ss_pred             CCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---C---------------CCCCCHHHHHHHHHHHHH
Q ss_conf             100000001776422237899971-875455---5---------------666402699999999999
Q gi|254780818|r  125 DTLSIARRKHPSSRNDLNSLCKRY-GITISH---R---------------SKHGALLDSHLLSDVYIK  173 (245)
Q Consensus       125 DTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---r---------------~~H~Al~Da~~~a~v~~~  173 (245)
                      |++.+++..+.-.+++|+++|.+| |.....   .               -+--.+.||.++.+++.+
T Consensus       397 Dl~~~~~~~~kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~~k  464 (919)
T 3iay_A          397 DLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEK  464 (919)
T ss_dssp             EHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77999987565672328999987715887643044435777535267999999985436889999999