HHsearch results for GI: 254780818 and protein with PDBid: 3iay_A
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.1e-06 Score=60.30 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCCC-----CCCCCEEEEEEEEEEECCEECCCEEEE-EECCCCCCCCHHHEEECCCCCCCCCCCCCCCHH
Q ss_conf 77589998467888-----888888999999999999880313798-985888228865724202101232248521002
Q gi|254780818|r 6 KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79 (245)
Q Consensus 6 ~mr~iv~D~ETTGl-----~~~~d~Iieigav~i~~~~~~~~~f~~-~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev 79 (245)
.+|.+.||+||++- +|..|.|++|+++.-..+.......+. ..++. .+++ ...+...++-.+.
T Consensus 248 plrilsfDIE~~~~~g~fp~~~~d~ii~I~~~~~~~g~~~~~~~~~~~~~~~-~~~~----------~~~v~~~~sE~eL 316 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTC-SPIT----------GSMIFSHATEEEM 316 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCC-CCBT----------TBEEEEESSHHHH
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCC-CCCC----------CCEEEEECCHHHH
T ss_conf 8279999999786899886433451124678762267766426413415776-7889----------9679981999999
Q ss_pred HHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCCC---------------------------------CCCHHC
Q ss_conf 344777530023-20231023-2243112100000112222---------------------------------100001
Q gi|254780818|r 80 FSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPL---------------------------------DPSRII 124 (245)
Q Consensus 80 ~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~~---------------------------------~~~~~i 124 (245)
+..|.+|+...| .+++|||. .||+.+|..-...+|.+.+ ..--.+
T Consensus 317 L~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~i 396 (919)
T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919)
T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE
T ss_conf 99999998662998798757857537999999998587514331765776644565643454335644228987378998
Q ss_pred CCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---C---------------CCCCCHHHHHHHHHHHHH
Q ss_conf 100000001776422237899971-875455---5---------------666402699999999999
Q gi|254780818|r 125 DTLSIARRKHPSSRNDLNSLCKRY-GITISH---R---------------SKHGALLDSHLLSDVYIK 173 (245)
Q Consensus 125 DTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---r---------------~~H~Al~Da~~~a~v~~~ 173 (245)
|++.+++..+.-.+++|+++|.+| |..... . -+--.+.||.++.+++.+
T Consensus 397 Dl~~~~~~~~kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~~k 464 (919)
T 3iay_A 397 DLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEK 464 (919)
T ss_dssp EHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77999987565672328999987715887643044435777535267999999985436889999999