HHsearch results for GI: 254780818 and protein with PDBid: 3ikm_A
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=93.96 E-value=0.014 Score=34.73 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=51.3
Q ss_pred CCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCC----------CCCC-------------------------
Q ss_conf 23202310232243112100000112222100001100000----------0017-------------------------
Q gi|254780818|r 90 QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA----------RRKH------------------------- 134 (245)
Q Consensus 90 ~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~la----------r~~~------------------------- 134 (245)
+..++||||++||...+..+.. +.. ...+++|||.|- |.+|
T Consensus 193 ~~rlVVGHNVsyDRaRi~EeY~---l~~-s~~rFlDTMSLHvavsGm~S~QR~~w~~~kk~~~~~~~~~~~~~~~~~~~~ 268 (1172)
T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYL---IQG-SRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKAR 268 (1172)
T ss_dssp SCCCCBCBCSSSSTTGGGTSSC---SSC-CCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------
T ss_pred CCCEEEECCCCCCHHHHHHHHH---HCC-CCCEEEEHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7637985675510888888873---145-676322103465540256624268998742313220012333332133321
Q ss_pred ----------CC-C---CCCHHHHHHHHC--CCCCC--CCC-----------------CCCHHHHHHHHHHHHHHH
Q ss_conf ----------76-4---222378999718--75455--566-----------------640269999999999997
Q gi|254780818|r 135 ----------PS-S---RNDLNSLCKRYG--ITISH--RSK-----------------HGALLDSHLLSDVYIKMM 175 (245)
Q Consensus 135 ----------p~-~---~~~L~~l~~~~~--i~~~~--r~~-----------------H~Al~Da~~~a~v~~~ll 175 (245)
-. . .|||.++++.|- ++++. |+. --+..|+.+|.+||..+.
T Consensus 269 ~~~~~~~~~W~~~sS~~~NSL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aT~~V~~kl~ 344 (1172)
T 3ikm_A 269 RGPAISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp -------CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2652234330002344536499999974799877877888885299999999899999999988999999999877