HHsearch results for GI: 254780818 and protein with PDBid: 3m8r_A
>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=97.16 E-value=0.00056 Score=43.46 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=75.9
Q ss_pred CCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf 46788888888899999999999988031379898588822886572420210123224852100234477753002320
Q gi|254780818|r 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 (245)
Q Consensus 14 ~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~~~~~~ 93 (245)
+|||+++|....|+-|+. -.. ..+ +..|+-. ..+. ...+...| +....+ .+..
T Consensus 2 ~e~~~~~p~~~~~vG~~~---~~~-~~~--~~~~~~~---~~~~---------~~~~~~~~---~~~~~~------~~~~ 54 (540)
T 3m8r_A 2 LEEAPWPPPEGAFVGFVL---SRK-EPM--WADLLAL---AAAR---------GGRVHRAP---EPYKAL------RDLK 54 (540)
T ss_dssp CEEECSSCCTTCEEEEEE---SSS-CTT--TCCEEEE---EEEE---------TTEEEECS---SHHHHG------GGCS
T ss_pred CCCCCCCCCCCEEEEEEE---EEC-CCC--EEEEEEC---CCCC---------CCCHHHHH---HHHHHH------HHHH
T ss_conf 887899988841899999---855-887--3786401---2234---------45322225---799863------4346
Q ss_pred EEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23102322431121000001122221000011000000017764222378999718754555666402699999999999
Q gi|254780818|r 94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 (245)
Q Consensus 94 lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ 173 (245)
-+.||..||+.+|. .++|.... ++.||+.+|..+-|+ +++|++|+++|.=. ..--|-.||.+|.++|..
T Consensus 55 ~~~~~~~~d~~~l~---~~~Gi~~~---~~~Dtmlaa~ll~~~-~~~l~~la~~~l~~----~~~YA~~Da~~t~~L~~~ 123 (540)
T 3m8r_A 55 EARGLLAKDLSVLA---LREGLGLP---PGDDPMLLAYLLDPS-NTTPEGVARRYGGE----WTEEAGERAALSERLFAN 123 (540)
T ss_dssp CBCSTTHHHHHHHH---HHTTCCCC---BCCCHHHHHHHHCTT-CCCHHHHHHHHTCC----CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHCCCCCC---CCCHHHHHHHHHCCC-CCCHHHHHHHHCCC----CHHHHHHHHHHHHHHHHH
T ss_conf 77756888799999---96799889---977189999983998-99869999997752----158899999999999999
Q ss_pred HHH
Q ss_conf 973
Q gi|254780818|r 174 MMV 176 (245)
Q Consensus 174 ll~ 176 (245)
|..
T Consensus 124 l~~ 126 (540)
T 3m8r_A 124 LWG 126 (540)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999