HHsearch results for GI: 254780818 and protein with PDBid: 3m8r_A

>3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A*
Probab=97.16  E-value=0.00056  Score=43.46  Aligned_cols=125  Identities=11%  Similarity=0.080  Sum_probs=75.9

Q ss_pred             CCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE
Q ss_conf             46788888888899999999999988031379898588822886572420210123224852100234477753002320
Q gi|254780818|r   14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE   93 (245)
Q Consensus        14 ~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~~~~~~   93 (245)
                      +|||+++|....|+-|+.   -.. ..+  +..|+-.   ..+.         ...+...|   +....+      .+..
T Consensus         2 ~e~~~~~p~~~~~vG~~~---~~~-~~~--~~~~~~~---~~~~---------~~~~~~~~---~~~~~~------~~~~   54 (540)
T 3m8r_A            2 LEEAPWPPPEGAFVGFVL---SRK-EPM--WADLLAL---AAAR---------GGRVHRAP---EPYKAL------RDLK   54 (540)
T ss_dssp             CEEECSSCCTTCEEEEEE---SSS-CTT--TCCEEEE---EEEE---------TTEEEECS---SHHHHG------GGCS
T ss_pred             CCCCCCCCCCCEEEEEEE---EEC-CCC--EEEEEEC---CCCC---------CCCHHHHH---HHHHHH------HHHH
T ss_conf             887899988841899999---855-887--3786401---2234---------45322225---799863------4346


Q ss_pred             EEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             23102322431121000001122221000011000000017764222378999718754555666402699999999999
Q gi|254780818|r   94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK  173 (245)
Q Consensus        94 lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~  173 (245)
                      -+.||..||+.+|.   .++|....   ++.||+.+|..+-|+ +++|++|+++|.=.    ..--|-.||.+|.++|..
T Consensus        55 ~~~~~~~~d~~~l~---~~~Gi~~~---~~~Dtmlaa~ll~~~-~~~l~~la~~~l~~----~~~YA~~Da~~t~~L~~~  123 (540)
T 3m8r_A           55 EARGLLAKDLSVLA---LREGLGLP---PGDDPMLLAYLLDPS-NTTPEGVARRYGGE----WTEEAGERAALSERLFAN  123 (540)
T ss_dssp             CBCSTTHHHHHHHH---HHTTCCCC---BCCCHHHHHHHHCTT-CCCHHHHHHHHTCC----CCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHCCCCCC---CCCHHHHHHHHHCCC-CCCHHHHHHHHCCC----CHHHHHHHHHHHHHHHHH
T ss_conf             77756888799999---96799889---977189999983998-99869999997752----158899999999999999


Q ss_pred             HHH
Q ss_conf             973
Q gi|254780818|r  174 MMV  176 (245)
Q Consensus       174 ll~  176 (245)
                      |..
T Consensus       124 l~~  126 (540)
T 3m8r_A          124 LWG  126 (540)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999